lowQualScore : 111111111111111111111111111 1111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 2 1 33333 33333333 222 1 000000000000000000000000000 2 333333 22 222 22 2 2 2 7777777777 2 1 444444 4444444 1 222222 111 2222 55555555555555555555555 222 1 11 44444 2 4444444444444 1 11 22 111 444444 3333333 1 22222222 1 222 2222222 11111 1111111111111111111111111111111111111111111111111111111 333333333333 111 11 11 222 111 111 11111 1 111 1 1 111 1 111 11 1 11 111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 22 11 1 3333333 88888888888888888888888888 33333333333333333333 1 111 1 1 11 1 333
lowQualScore : 0 5 4 22222 66666666 111 5 999999999999999999999999999 4 4 0 000000 33 222 3 2 4 4 77 0 4 0 0 9999999999 4 2 0 5 3 888888 6 3333333 6 3 888888 777 8888 66666666666666666666666 111 6 2 77 2 66666 77 0 0000000000000 8 3 88 7 33 7 333 111111 1111111 3 6 3 7 66666666 55 6 3 0 33 2 8 2 444 8 6666666 8 6 44444 2 5555555555555555555555555555555555555555555555555555555 2 555555555555 3 6 8 111 8 8 8 11 11 1 111 8 8 6 111 555 6 6 3 88888 0 6 99 6 888 0 6 333 0 2 999 99 4 0 44 3 666 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 33 4 8 1 88 0 5 0 1111111 2 99999999999999999999999999 66666666666666666666 0 6 000 0 0 2 33 5 999 4
lowQualScore : . . . ..... ........ ... . ........................... . . . ...... .. ... . . . . .. . . . . .......... . . . . . ...... . ....... . . ...... ... .... ....................... ... . . .. . ..... .. . ............. . . .. . .. . ... ...... ....... . . . . ........ .. . . . .. . . . ... . ....... . . ..... . ....................................................... . ............ . . . ... . . . .. .. . ... . . . ... ... . . . ..... . . .. . ... . . ... . . ... .. . . .. . ... ................................................................................................................... .. .. . . . .. . . . ....... . .......................... .................... . . ... . . . .. . ... .
lowQualScore : 0 5 0 00000 00000000 555 0 555555555555555555555555555 0 0 0 000000 00 555 0 5 0 0 55 0 0 0 0 5555555555 0 5 0 0 0 555555 7 3333333 0 7 777777 777 3333 33333333333333333333333 000 7 0 00 5 00000 00 0 0000000000000 3 3 33 3 00 7 000 333333 0000000 2 7 3 0 22222222 88 8 5 0 66 8 0 8 666 0 0000000 0 7 88888 2 2222222222222222222222222222222222222222222222222222222 2 333333333333 5 7 3 777 0 0 0 00 00 4 000 0 0 7 777 888 7 7 3 33333 8 7 22 7 333 6 4 444 0 8 000 00 2 0 55 0 000 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00 22 6 0 0 22 8 0 0 0000000 0 88888888888888888888888888 88888888888888888888 0 5 000 0 0 0 88 5 000 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGGAGTCCTGAATTAGTTACAANATGCTGNNCCTGTGAATACGGGTATGTAACTGCAGTATATGTATAGTGAGCAGACANACATATAAATGGTAGCCGTAAAATCAACACAACGAANACNCATACGAACGATGAAATAATTCANAGCCCACNCTTNTCNTAAAANGANTAGCTTATAAGTATNTATAGAGAAACGTATGCATACATTTGGGNGANTGTACAAGTTAGNGGGCTTTANTGCATATCTTT-------AAAA-GATNGAAATGAAAACCAA-CTT-TTTTT-T-ATTTCC----TTAAGTAAAATGA-TGCAACTT--TGTGCGAGA--TGTACCGTAGAATTTGCCAATAAA-GTCGAAAGCGTGTGGGAA-NTAAGATAANTTGAATTTCAAGTATNNACCAAGCGTTC-GAGCTT-ATAG-AAAATTCAT-GAGTTCTTTAT--TTCATCTGTCCTT--ATAAGCAAACTATGNCAAAA-ATAT-A----ACGACCCTCTTTATTTTATTTTA-TCCTTGCATTGGG-TGTCCTTCTGATACAGT-TTNTAGNAANC-TTTCATTAATTAAT-TGATGGAAAGAACAAA-ACAT-TT-------C-TTCACATTTT-CCGTTCC----TTTATT-AA-TAC-C-ATT-TCAA-A-------CANA--ATAC----ATT---TGTT---AAAAGANAA----CA-TNNTTTCCAT-GAAAGTTCT---GAGCTG-C-ACG-TGTAA--GTTATAA--GCATG-GT-TG-ATC-ATT---GCAACT--AGG-AAT-ATCAC----TAATACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACACTCAAAN-NTTGTAG-AAACTTCT-GTC-AAGNGAG--ACA-TTATT-A--------------T------T----------GT-AGTAG----------T---------TGCTGTNGAAGAGAATA-TGTAC-----AGATTGATTTTGC------CACAC--ACG-GAAC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CATTTTTTTTT-AAA--------------------TTTTCGACA-----AAC---AAAC--TT-CTTCC-GCCTAACAGTATTCT-CA-ATACTTTG--ATTAAAATNGCATGTCNTGATT
Reference ( gi|2 ) : TAACCAATCAAATACCGACATCTTAGTTAATTAAGAAATAATTATAAGACAATAACAGACGAATTTGAATGGTATAAAAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--GGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAATGAATACTCAT-CGAACGATGAAATAATTCAT-GTCT-TTCTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTAT--A-A-----AGAAAAGTGTA-AAGTTAGTGGG-T---GTGCATATCTTT-------AAAATGATGGAAATGAAAACCAT-TTTATTTTT-T-ATTTCC----TTAAGTAAAATGATTGCAACTCAGTGTGTGAGA--TGTACCGTAGAATTTGCCAATAAA-TCCGAAAGCGTGTGGGAA-GTAAGATAACTTGA-T---AAATATATATCAA-CGTTT-GAACTTGATAG-AAAATACAT-GAGTTCTTTAT--TTCATCTGTCCTTTTATAAGCAAACTATGACAAAAGATAT-A----ACAACCCTCTTTATTTT-TTTAA-TCCTTGCATTGCG-TGTCCTTATGACACACT-TTGTAATAAAC-TTTCATTGATCAAT-TGATGGGAAGAACAAA-TGAT-TT-------C-TTCACATTTT-CCGTTCC----CTTACTGAA-TACACGATT-TCAA-A-------TAAA--ATA-----ATT---TG-----GAAAGATAA----CA-TACTGTTCAT-GAATGTTCT---GAGTTG-C-ACG-TGTAA--GTTATAA--GCATC-AT-TG-ATC-ATT---GCAACA--AGG-AAT-ACCAC----TAATACTGTAA-TTA--CAT-TTC---TTCATAAATAGATAT-GAATTGTACGCTCAAAG-GTTGTAT-AAACCTCT-GTT-AAGAGAA--ACA--TAC--A--------------T------T----------GT-AGT------------T---------TGCTATAGAAGAGAAT----TAC-----AAA-------TGC------CACAC--ACG-TAGC-ATACCAA-TATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CA-TTTCTTTT-AAA--------------------CTTTCGACA-----AAC---AAAC--CT-CTTCC-GCCTAACAGTGTTCT-CA-ACACTTTG--ATTAAAATTG-ATGTCATGATTTCATTAGGTTT
gi|3 : AAAGTGTTGGAAGTTCTGAATTAGTT-CAATATGCTGGACCTGTAAATACGGG-ATGTAACTGCAGTATATATATA-TGAACAGACAAACA-ATAAATGGTAGCCGTAAAATCAACATAATGAATACTCATACGAACGATGAAATAATTCAT-GTCT-TTCTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTAT--ATA-----AGAAAAGTGTACAAGTTAGTGGGCT---GTGCATAT-TTT-------AAAATGATTGAAATGAAAACCAT-CTTTTTTTT-TGATTTCC----TTACGTAAAATGATTGCAACTTCGTGTGTGAGAAATGTACCGTAGAATTTGCCAATAAAATCCGAAAGCGT-TGGGAAAGTAAGATAACTTGAAT---AAATATATATCAA-CGTTTTGAACTTGATAGGAAAATACATTGAGTTCTTTATATTTCATCTGTCCTTTTATAAGCAAACTATGACAAAAGATATTA----ACAACCCTCTTTATTTT-TTAGATTCCTTGCA-TGCG-TGTCCTTATGAAACACT-TTGTAATAAAC-TTTCATTGATCAAT-TAGTGGGAAGAACAAA-TGATGTT-------CTTTCACATTTTCCCGTTCC----CTTACTGAATTACACGATT-TCAATA-------TAAA--ATA-----ATT----------GGAAGATAA----CA-TACT-TTCAT-GAATGT
gi|1 : TGGGA-TCCTAAATTAGTTACAAAATA--ATTCCTGTGAATACGGGTA------TGCAG---ATGTATAGTGAGCAGACAC-CAT--------TAG-----------ACACAACGAAAACACAT-TGAACGAT------ATTTAGAGCCCACACTTCTCGTAAAATGAATAGTTTATAAGTATATATAGAGAAACATATGCA-ACATTTGGGTGATTGTA-AA-TTAAGAGA-TTTATTGAATATCTTTTTTTAAAAAAAAGGTATAAAGGAAGACCAA-TTT-TTTTT-T-ATTTTC----ATAAGTAAAATG---------------------------CCGTAGAATTTACCAATAAA-GTCGAAAGCGTAAGGGAA-ATGAGATAAATTAA-TTTCAAGTATTGACCAAGCGTTC----------------ATTCAT-GAGTTCTTCAT--T
gi|9 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagGCATATCTTT-------AAAG-GATGGAAATGAAAGCCAAACTGATTTTTAT-GTTTCCGTAATTAAGTAAAATAAATGCAATTTATTGTACGAAA--TGTACCGCAGAATTTGTCAATAAA-GTAGAAGG-GGGTATGAA-TTAAcggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctatctgtccttatcagcaaactttgccaaaatatattacaaccctctttattttattctattcttacatagggtgtccttctcatacagtatctaagaacatttcattaattaagtaatggaaagaacaaaatatttcttcacattttccattcctttatttatttcaaacacaatacattaagtgtaaaaaaaaaaagcattacttccatgataattctgagctacacgtgtaagttataagtatggttgatcattgcaactaggaatattaccgatactttagttacatttcctcctgaaaagatataaaattttacactcaaactttgtagaaacttctgtcaagagagacagttattaaaggtgtagtagttagaggcagttgctgtgaaagagaatattgttgagattgattttgccacacacggaacatgcactgtaccaatgcttcaatttattcaactttttttttaaaattttcgacaaacatgcttctgcttaacagtattctcaatactttgac
gi|12 : TTT-GAGTTTCATAG-AAAAGTCAG-AATTTCTTTAT--TTTATCTTTCC-TAGATAAGAAAACTATGTCAA---ATAT-ACACTATGATCATCTTTATTTTATTTTA-TTCTTGCAT
gi|1 : ATCTGTCCTT--ATCAGCAAACTTTGCCAAAATATAT-T----ACAACCCTCTTTATTTTATTCTA-TTCTTACATAGGG-TGTCCTTCTCATACAGT-ATCTAAGAACA-TTTCATTAATTAAG-TAATGGAAAGAACAAA-ATAT-TT-------C-TTCACATTTT-CCATTCC----TTTATT----T-----ATT-TCAA-A-------CACA--ATAC----ATTAAGTG-----TAAAAAAAAAAAGCATTACT-TCCAT-GATAATTCT---GAGCTA-C-ACG-TGTAA--GTTATAA--GTATG-GT-TG-ATC-ATT---GCAACT--AGG-AAT-ATTAC----CGATACTTTAG-TTA--CAT-TTC---CTCCTGAAAAGATATAAAATTTTACACTCAAAC-TTTGTAG-AAACTTCT-GTC-AAGAGAG--ACA--GTT--A--------------TTAAAGGT----------GT-AGTAGTTAGAGGCAGT---------TGCTGTGAAAGAGAATATTGTTG-----AGATTGATTTTGC------CACAC--ACG-GAAC-ATGC-----ACTGTACCA----ATGCTTCAA-TTTATTCA-A-CT-TTTTTTTTAAAA--------------------TTTTCGACA-----AAC---A-----TG-CTTCT-GCTTAACAGTATTCT-CA-ATACTTTG--A
gi|8 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagtgggatcctaaattagttacaaaataattcctgtgaatacgggtatgcagatgtatagtgagcagacaccattagacacaacgaaaacacattgaacgatatttagagcccacacttctcgtaaaatgaatagtttataagtatatatagagaaacatatgcaacatttgggtgattgtaaattaagagatttattgaatatctttttttaaaaaaaaggtataaaggaagaccaatttttttttattttcataagtaaaatgccgtagaatttaccaataaagtcgaaagcgtaagggaaatgagataaattaatttcaagtattgaccaagcgttcattcatgagttcttcattcggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctCAACCCTCTTTATTTC-AGTTA-TCCTTACATTGGGGTGTCCTTCTGG--------TCTAGGAATC-TTTCATTAATTAAT-TGATGGAAAGAACAAA-ACAT-TT-------C-TTCACATTTC-CCGTTCC----TTTATT----T-----ATT-TCAA-A-------CAGA--GTAT----ATT---CGTTTT-AAAATAAAA----CATTACT-TCCAT-AAAc
gi|7 : TGATACAGTATTG-AGCGAACCTTTTAT-AATTAAT-TGAATGAAAGAACAAAATTAT-TTGAAATAGC-TTTATATTTC-CCGTTTC----CTT--TTAA--ACTTTATTATCAA-AACACAGTCAGT--ATA-----AGT---TGTT---AAAAGATAAG---CA-TTATTTCCATTGAAAGTTTCATAGAGTTGTC-ACGGTGTAAAGGTTATTATCGCATG-GT-TGGATC-ATT---GCAACATTAGGAAAT-ATCAC-----AATACTTTAA-TCA--CATATTC---TTCag
gi|11 : TAATTAATGTGATGGAAACAACACG-ACAT-TT-------C-TTCACATATT-CCGTTCCTCTATTTACTGAA-TGCATAAT----AA-A-------T--A--CTA-----GTA---TG-----AAAGGACAA----CA-TTATTTCCAT-GAATGTTCT---tcct
gi|10 : aaTTTT-CCGTTCC----TTTATT--------C-ATT-TCAA-A-------CACAGCATACATGTATT---TACTGTTAAAAGATAA----AA-TTATTTCCAT-GAAAGTTCT---GAGCTG-C-CCC-TTTAA--GTTTTAA--GAATG-GT-TG-ATC-ATT---GCAAC
gi|4 : AAAGTTCT---GAGCTG-C-ACG-TGTAA--GTTATAA--GTATG-GT-TG-ATC-ATT---GCAACT--AGG-AAT-ATCACTAATTAATACTTTCA-TTA--CAT-TTC---TTCCTAAAACGATAT-AAATTTTACATTCAAAC-TTTGTAG-AAACTTCT-GTG-AAGAGAG--ACAGTTAT--AAAGGTATTAGAAGTT------T----------GA-AGCAG----------T---------TGTTGTCGAAGAGAA-----TACTGTTGAGATTGATTTTGC------CACACGTACG--ATC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTTAA-CATTTTTTTTT-AAATGTGTCAATTTATTTAACATTTTTTGAAATTTTCGAC---AAACATTT-GTTCT-GC--ACCA---TTCT-CA-ATACTTTG--ATT-AAATAGCATGTCTTGA
gi|5 : ttt---GAGTTG-CCACG-TGTAA--GTTATAA--GCATCCATCTG-ATCCATT---GCAACA--AGG-AATTACCAC----TAATACTGTAA-TTATACAT-TTCC--TTCATAAATAGATAT-GAATTGTACGCTCAAAG-GTTGTATAAAACCTCTGGTTAAAGCGAACCACA--T-C--A--------------T------T----------GTCAGTA-----------T---------TGCTATAGAAGAGAAT----TAC-----AAA-------TG-------CACAC--ACGTTAGCAATACCAATTATTTCAACATTC--TGTTTCAATTTTATTTC-ACCATTTTCTTTT-AAA--------------------CTTTCGACA-----AACACAAAAC--CT-CTTCCGGCCTAACAGTGTTCTCCATACACTTTGGTATTAAAATT--ATGTCATGATTat
gi|6 : tcTC-ATTAGAGCAATT--AGG-AAT-ATCAC----TTACATTTTGACTTA--TAT-TTCCTTTTCTTAAAAAGATA---ATTTTTACACTCAAAACGTTCTAG-AAACACCT-GCC-AAGCGAG--ACAATTATTAA--------------T------TAAAGGTGTACAT-AGT------------TAGAAGCAGATGTTGTCGAATAGAATAGTGTTG-----AGT-------TGCTTTGCCCACAC--ACA-GAAC-ATACCAA-GATTTCAACGTTTCATTTTTAAA-TTCATTTC-A-C--TTTTTGT--------------------------TTTCGACA-----AAC---CAAC--ATGCTTCC-GCCTAACTCTATTCT-CA-GTACTTTG--AT
gi|15 : tatagaaatggc--AGG-AAT-ATCAC----CAATAATCTAA-TTG--CAT-ATC---TTCCTAAA-AGATAT-AAATGTTACACTCAAA
gi|16 : ttA--TACT-A--------------T------T----------G--AGA------------T---------TGCTTTG-------AC----TAC-----AAA--------GT------TA-----ACG-GAAC-ATGCCTA-GATTTCAACATTTCATGTTTctca
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AACGTTGTAGAAAATTCCGTTGAGAGAGACAATTGTTAAAATGTAGCATTTAGAAGCAATTACTGTCGGGTGAAAAGAATATTGTTGAGATCGCTTTTGT
Unaligned ( gi|14 ): AAGAGAGACAATTGTTGAAGATGTAGTACTTAGAAACAATTGCTGTCGAAAAGATTGCTTTTGCCACACACAGAA
Unaligned ( gi|17 ): GCATGCACTTTAGTTTCGACTTAGGTACGCCACTGATCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 22222 2222222222222 22 2 333333333 33 2 2 7777777777777777 22 444444 33333333 2 11111111 11 2222 55555555555555555555555 1 1 33333 2 1 33333 1 11 2222222 3 11111 111 1 11111 2222222 8888888888888 1 222222 44444444444444444444 11 111 1111 111 22222222222222222222222222222222222222222222222222222222222222222222222222 11111 444444444444 11111 66666666666666666666 22222 222222222 11 11 222
lowQualScore : 0 3 0 7 1 77777 0 7 7 7 0 6 0 5555555555555 6 22 0 0 1 1 3 6 111111111 1 1 1 1 00 3 0 1 3 0 0000000000000000 222 1 22 77 111111 2 66666666 0 1 77777777 33 1111 88888888888888888888888 0 0 2 6 0 1 1 6 22222 0 22 0 3 0 66666 11111 4 0 33 5555555 1 0 66666 2 0 5 6 444 0 2 0 2 0 777 1 99 1 6 33333 1111111 5 2222222222222 5 5 1 1 444444 66666666666666666666 1 33 22 5 0 000 6 6 6 99 77 1 77 5 5 66 5 5 2 2222 5 77 5 555 1 1 6 6 22 6 0 99 3 1 00000000000000000000000000000000000000000000000000000000000000000000000000 1 33333 3 888888888888 2 9 77 44444 1 5 6 99 2 8 8 8 66 0 1 55555555555555555555 00000 000000000 0 8 3 6 11 11 7 222 1
lowQualScore : . . . . . ..... . . . . . . . ............. . .. . . . . . . ......... . . . . .. . . . . . ................ ... . .. .. ...... . ........ . . ........ .. .... ....................... . . . . . . . . ..... . .. . . . ..... ..... . . .. ....... . . ..... . . . . ... . . . . . ... . .. . . ..... ....... . ............. . . . . ...... .................... . .. .. . . ... . . . .. .. . .. . . .. . . . .... . .. . ... . . . . .. . . .. . . .......................................................................... . ..... . ............ . . .. ..... . . . .. . . . . .. . . .................... ..... ......... . . . . .. .. . ... .
lowQualScore : 7 3 7 3 0 33333 7 3 3 3 7 7 7 3333333333333 7 33 7 7 0 0 7 7 333333333 0 0 0 0 33 7 7 0 7 7 7777777777777777 333 0 33 77 333333 5 22222222 0 0 88888888 88 2222 00000000000000000000000 2 0 5 5 0 0 0 7 33333 7 00 7 3 0 00000 00000 0 0 88 5555555 0 0 00000 8 8 6 0 000 8 5 0 5 8 000 0 00 0 7 33333 7777777 7 3333333333333 7 7 4 0 333333 99999999999999999999 0 66 00 7 8 000 7 7 7 22 99 7 99 7 7 99 7 7 3 1111 7 99 7 777 0 7 7 7 00 7 3 22 7 0 66666666666666666666666666666666666666666666666666666666666666666666666666 7 11111 0 999999999999 0 0 99 33333 7 7 7 22 5 0 0 0 88 8 0 00000000000000000000 00000 444444444 6 0 2 0 00 00 3 777 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG-TGGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACA-ACATATAAATG-TAGCCGTAAA--CAACATAACGAATACTCAT-CGAACGATGAAATAATTCAT-GTCT-TTCTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATGCATA-A---GGAAAAGTGTA-AAGTTAGTGGGNT---GTGCATATCTTT--------AAAATGATGGAAATGAAAACCAN-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGA-T-GCAACTTAGTGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AAGTAAGATAACTTGAAT--CAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATNCA-TGAGTTCTT--TATTTCATCTGTCC--T-T--ATAAGCAAACTATGNCAAAAGATA-TA--ACAACCCTCTTTATTTTATTTTA---TCCTTGCATTGNG-TGTCCTTNTGATACANTNTNTAAN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCGTTCCCTTATT-AAT---AC--T-ATT-TC-AA-ACANA------ATA-AT-------T---TG--TTAAAAGATAA--CATTATTTCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACGCTC-AAACGTTGTA-GAAACTTCTG--TNAAGAGAGAC-A-TTAT-----T--A---T------T----GT----A-G----T----------AG------T----------TGCTGT----NGAAGAGAAT--A-TGT---NGAGATTGCTTTTGCCACAC--A-----CGG-AACA-TACCAAG-ATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CATTTTTTTTTAAA--------------------TTTTCGACA-----AAC---AAACA-TTCTTCC-GCCTAACAGTATTCTCAAT--ACTTTG--ATTAAAATTG-ATGTCATGATT
Reference ( family-970 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGGAGTCCTGAATTAGTTACAANATGCTGNNCCTGTGAATACGGGTATGTAACTGCAGTATATGTATAGTGAGCAGACANACATATAAATGGTAGCCGTAAAATCAACACAACGAANACNCATACGAACGATGAAATAATTCANAGCCCACNCTTNTCNTAAAANGANTAGCTTATAAGTATNTATAGAGAAACGTATGCATACATTTGGGNGANTGTACAAGTTAGNGGGCTTTANTGCATATCTTT--------AAAA-GATNGAAATGAAAACCAA-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGA-T-GCAACTT--TGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AANTAAGATAANTTGAATTTCAAGTATNNACCAAGCG-TTCGAGCTT-ATA-GAAAATTCA-TGAGTTCTT--TATTTCATCTGTCC--T-T--ATAAGCAAACTATGNCAAAA-ATA-TA--ACGACCCTCTTTATTTTATTTTA---TCCTTGCATTGGG-TGTCCTTCTGATACAGTTTNTAGN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-CATTT-------CTTCACATTTT-CCGTTCCTTTATT-AAT---AC--C-ATT-TC-AA-ACANA------ATACAT-------T---TG--TTAAAAGANAA--CATNNTTTCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACACTC-AAANNTTGTA-GAAACTTCTG--TCAAGNGAGAC-A-TTAT-----T--A---T------T----GT----A-G----T----------AG------T----------TGCTGT----NGAAGAGAAT--A-TGT---ACAGATTGATTTTGCCACAC--A-----CGG-AACA-TACCAAG-ATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CATTTTTTTTTAAA--------------------TTTTCGACA-----AAC---AAAC--TTCTTCC-GCCTAACAGTATTCTCAAT--ACTTTG--ATTAAAATNGCATGTCNTGATT
gi|1 : TGGGA-TCCTAAATTAGTTACAAAATAAT--TCCTGTGAATACGGGTATG------CAG---ATGTATAGTGAGCAGACAC-CAT--------TAG-----------ACACAACGAAAACACAT-TGAACGAT------ATTTAGAGCCCACACTTCTCGTAAAATGAATAGTTTATAAGTATATATAGAGAAACATATGCA-ACATTTGGGTGATTGT--AAATTA-AGAGATTTATTGAATATCTTTTTTTAAAAAAAA-GGTATAAAGGAAGACCAA-TT--T-TTTTTT--ATTTTC----ATAAGTAAAATG----------------------------CCGTAGAATTTACCAATAAAGT-CGAAAGCGTAAGGG-AAATGAGATAAATT-AATTTCAAGTATTGACCAAGCG-TTC---------------ATTCA-TGAGTTCTT--CATT
gi|1 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagATCTGTCC--T-T--ATCAGCAAACTTTGCCAAAATATA-TT--ACAACCCTCTTTATTTTATTCTA---TTCTTACATAGGG-TGTCCTTCTCATACAGTATCTAAG-AACATTTCATTAATTAAG-TAATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCATTCCTTTATT-----------T-ATT-TC-AA-ACACA------ATACAT-------TAAGTG--TAAAAAAAAAAAGCATTACTTCCA-TGATAATTCT---GAGCTA-C-AC-GTGTAA--GTTATAA--GTAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATTACCGAT----ACTTTAG-TTA--CAT-TTC---CTCCTGAAAAGATATAAAATTTTACACTC-AAACTTTGTA-GAAACTTCTG--TCAAGAGAGAC-AGTTAT-----T--AAAGG------T----GT----A-G----TAGTTAGAGGCAG------T----------TGCTGT----GAAAGAGAAT--ATTGT---TGAGATTGATTTTGCCACAC--A-----CGG-AACA-TGC-----ACTGTACCA----ATGCTTCAA-TTTATTCA-A-CTTTTTTTTTAAAA--------------------TTTTCGACA-----AAC---A-----TGCTTCT-GCTTAACAGTATTCTCAAT--ACTTTG--Acggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctatctgtccttatcagcaaactttgccaaaatatattacaaccctctttattttattctattcttacatagggtgtccttctcatacagtatctaagaacatttcattaattaagtaatggaaagaacaaaatatttcttcacattttccattcctttatttatttcaaacacaatacattaagtgtaaaaaaaaaaagcattacttccatgataattctgagctacacgtgtaagttataagtatggttgatcattgcaactaggaatattaccgatactttagttacatttcctcctgaaaagatataaaattttacactcaaactttgtagaaacttctgtcaagagagacagttattaaaggtgtagtagttagaggcagttgctgtgaaagagaatattgttgagattgattttgccacacacggaacatgcactgtaccaatgcttcaatttattcaactttttttttaaaattttcgacaaacatgcttctgcttaacagtattctcaatactttgac
gi|10 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagtgggatcctaaattagttacaaaataattcctgtgaatacgggtatgcagatgtatagtgagcagacaccattagacacaacgaaaacacattgaacgatatttagagcccacacttctcgtaaaatgaatagtttataagtatatatagagaaacatatgcaacatttgggtgattgtaaattaagagatttattgaatatctttttttaaaaaaaaggtataaaggaagaccaatttttttttattttcataagtaaaatgccgtagaatttaccaataaagtcgaaagcgtaagggaaatgagataaattaatttcaagtattgaccaagcgttcattcatgagttcttcattcggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctTTTT-CCGTTCCTTTATT-----------C-ATT-TC-AA-ACACAGC----ATACATGTATTTAC---TG--TTAAAAGATAA--AATTATTTCCA-TGAAAGTTCT---GAGCTG-C-CC-CTTTAA--GTTTTAA--GAAT--GGTT-GATC-ATTGCAAC--c
gi|11 : TAATTAATGTGATGGAAACAACACG--A-CATTT-------CTTCACATATT-CCGTTCCTCTATT---T---AC--------TG-AATGCATA------ATAAATAC-----TAG-TA--TGAAAGGACAA--CATTATTTCCA-TGAATGTTCT---
gi|12 : aa-TTTGAGTTTCATA-GAAAAGTCA-GAATTTCTT--TATTTTATCTTTCC--TAG--ATAAGAAAACTATGTCAAAT-ATA-CACTATGATCATCTTTATTTTATTTTA---TTCTTGCAT
gi|13 : AACGTTGTA-GAAAATTCCG--TTGAGAGAGACAA-TTGT-----TAAA---A------T----GT----A-GCATTT----------AGAAGCAAT----------TACTGTCGGGTGAAAAGAAT--ATTGT---TGAGATCGCTTTTG
gi|14 : AAGAGAGAC-A---AT-----T--G---T------T----GA----A-GATG-T----------AG------T-----------ACT-T----AGAA-ACAATTGC-TGTCGAAAAGATTGCTTTTGCCACAC--A-----CAG-AAt
gi|15 : --TAGG-AAT-ATCACCAAT----AATCTAA-TTG--CAT-ATC---TTCCT-AAAAGATAT-AAATGTTACACTC-AAA
gi|16 : tAGATTGCTTTGACTACAA--AGTTAACGG-AACA-TGCCTAG-ATTTCAACATTTCATGTTTctca
gi|2 : atactattgAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--GGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACA-ACATATAAATG-TAGCCGTAAA--CAACATAATGAATACTCAT-CGAACGATGAAATAATTCAT-GTCT-TTCTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-----GTATAAA----GAAAAGTGTA-AAGTTAGTGGGT----GTGCATATCTTT--------AAAATGATGGAAATGAAAACCAT-TT--TATTTTTT--ATTTCC----TTAAGTAAAATGA-TTGCAACTCAGTGTGTGAG--ATGTACCGTAGAATTTGCCAATAAATC-CGAAAGCGTGTGGG-AAGTAAGATAACTTGA----TAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATACA-TGAGTTCTT--TATTTCATCTGTCC--T-TTTATAAGCAAACTATGACAAAAGATA-TA--ACAACCCTCTTTATTTT-TTTAA---TCCTTGCATTGCG-TGTCCTTATGACACACTTTGTAAT-AAACTTTCATTGATCAAT-TGATGGGAAGAACAAA--T-GATTT-------CTTCACATTTT-CCGTTCCCTTACTGAAT---ACA-CGATT-TC-AA-ATAAA------ATA-AT-------T---TG----GAAAGATAA--CATACTGTTCA-TGAATGTTCT---GAGTTG-C-AC-GTGTAA--GTTATAA--GCAT--CATT-GATC-ATTGCAAC--AAGG-AAT-ACCACTAAT----ACTGTAA-TTA--CAT-TTC---TTCATAAATAGATAT-GAATTGTACGCTC-AAAGGTTGTA-TAAACCTCTG--TTAAGAGAAAC-A--TA------C--A---T------T----GT----A-G----T------------------T----------TGCTAT----AGAAGAGAAT------T---ACAAA-------TGCCACAC--A-----CGT-AGCA-TACCAAT-ATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CA-TTTCTTTTAAA--------------------CTTTCGACA-----AAC---AAAC--CTCTTCC-GCCTAACAGTGTTCTCAAC--ACTTTG--ATTAAAATTG-ATGTCATGATT
gi|3 : taaccaatcaaataccgacatcttagttaattaagaaataattataagacaataacagacgaatttgaatggtataaaAAAGTGTTGGAAGTTCTGAATTAGTT-CAATATGCTGGACCTGTAAATACGGG-ATGTAACTGCAGTATATATATA-TGAACAGACAAACA-ATAAATGGTAGCCGTAAAATCAACATAATGAATACTCATACGAACGATGAAATAATTCAT-GTCT-TTCTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTAT--ATA-----AGAAAAGTGTACAAGTTAGTGGGCT---GTGCATAT-TTT--------AAAATGATTGAAATGAAAACCAT-CT--T-TTTTTTTGATTTCC----TTACGTAAAATGATT-GCAACTTCGTGTGTGAGAAATGTACCGTAGAATTTGCCAATAAAATCCGAAAGCGT-TGGGAAAGTAAGATAACTTGAAT---AAATATATATCAA-CGTTTTGAACTTGATAGGAAAATACATTGAGTTCTTTATATTTCATCTGTCCTTT-T--ATAAGCAAACTATGACAAAAGATATTA--ACAACCCTCTTTATT---TTTTAGATTCCTTGCA-TGCG-TGTCCTTATGAAACACTTTGTAAT-AAACTTTCATTGATCAAT-TAGTGGGAAGAACAAATGA-TGTTC-------TTTCACATTTTCCCGTTCCCTTACTGAATTACAC--G-ATT-TC-AATATAAA------ATA-AT-------T---GG------AAGATAA--CATACTTT-CA-TGAATGTtcattaggttt
gi|4 : AAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GTAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAATTAATACTTTCA-TTA--CAT-TTC---TTCCTAAAACGATAT-AAATTTTACATTC-AAACTTTGTA-GAAACTTCTG--TGAAGAGAGAC-AGTTATAAAGGT--A---T------TAGAAGTTTGAA-G----C----------AG------T----------TGTTGT----CGAAGAGAAT--ACTGT---TGAGATTGATTTTGCCACACGTA-----C-G-ATCA-TACCAAG-ATTTCAACATTTCATGTTTCAA-TTTATTTTAA-CATTTTTTTTTAAATGTGTCAATTTATTTAACATTTTTTGAAATTTTCGAC---AAACATTTGTTCT-GC---AC--CATTCTCAAT--ACTTTG--ATT-AAATAGCATGTCTTGA
gi|5 : ttt---GAGTTG-CCAC-GTGTAA--GTTATAA--GCATCCATCT-GATCCATTGCAAC--AAGG-AATTACCACTAAT----ACTGTAA-TTATACAT-TTCC--TTCATAAATAGATAT-GAATTGTACGCTC-AAAGGTTGTATAAAACCTCTGGTTAAAGCGAACC-A-C-AT-----C--A---T------T----GTC---A-G----T----------A-------T----------TGCTAT----AGAAGAGAAT------T---ACAAAT-------GC-ACAC--A-----CGTTAGCAATACCAATTATTTCAACATTC--TGTTTCAATTTTATTTC-ACCATTTTCTTTTAAA--------------------CTTTCGACA-----AACACAAAAC--CTCTTCCGGCCTAACAGTGTTCTCCATACACTTTGGTATTAAAATT--ATGTCATGATTat
gi|6 : tcTATAG--AAAT--GGCT-CATT-AGAGCAAT--TAGG-AAT-ATCACTTAC----ATTTTGACTTA--TAT-TTCCTTTTCTTAAAAAG--AT-AATTTTTACACTCAAAACGTTCTA-GAAACACCTG--CCAAGCGAGACAA-TTAT-----TA-A---TTAAAGGT----GT----ACA----T----------AG------TTAGAAGCAGATGTTGT----CGAATAGAAT--AGTGT---TGAG-TTGCTTTGCCCACAC--A-----CAG-AACA-TACCAAG-ATTTCAACGTTTCATTTTTAAA-TTCATTTC-A-C-TTTTT------G--------------------TTTTCGACA-----AAC---CAACA-TGCTTCC-GCCTAACTCTATTCTCAGT--ACTTTG--AT
gi|7 : TGATACAGTATTGAGCGAACCTTTTAT-AATTAAT-TGAATGAAAGAACAAA--ATTATTTGAAATAGCTTTATATTTC-CCGTTTCCTT-TT-AA----ACTTT-ATTATCAAA-ACACAGTCAGTATA-AG-------T---TG--TTAAAAGATAAG-CATTATTTCCATTGAAAGTTTCATAGAGTTGTC-ACGGTGTAAAGGTTATTATCGCAT--GGTTGGATC-ATTGCAACATTAGGAAAT-ATCAC-AAT----ACTTTAA-TCA--CATATTC---TTC
gi|8 : CAACCCTCTTTATTTCAGTT-A---TCCTTACATTGGGGTGTCCTTCTGGT-------CTAGG-AATCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-CATTT-------CTTCACATTTC-CCGTTCCTTTATT-----------T-ATT-TC-AA-ACAGA------GTATAT-------T---CGTTTTAAAATAAAA--CATTACTTCCA-TAAAAGtcct
gi|9 : GCATATCTTT--------AAAG-GATGGAAATGAAAGCCAAACTGAT-TTTTAT--GTTTCCGTAATTAAGTAAAATAAAT-GCAATTTATTGTACGAA--ATGTACCGCAGAATTTGTCAATAAAGT-AGAAGG-GGGTATG-AATTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCATGCACTTTAGTTTCGACTTAGGTACGCCACTGATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 4444 1 222222222 11 1 1 1 11 1 1 1 444444444444 1 1 1 3333333 11 1111 11 2222 33 111 1 1 33333 1 1 1 1 11 2222 1 2222 111 1 1111 2222222 77777777777 1 222222 4444444444444444444444 11 111 1111 111 222222222222222222222222222222222222222222222222222222222222222222222222 11111 3333 11111 111 66666666666666666666 22222 111 1 11 11 22
lowQualScore : 3 7 5555 7 7 7 6 3 111111111 6 88 0 3 6 3 3 88 3 3 3 444444444444 3 4 0 2 2222222 9 0 11 4444 33 1111 33 0 666 44 444 0 0 2 6 0 0 6 66666 3 0 2 11 2 0 1 0 33 8888 1 3 2 0 1111 0 5 6 444 0 1 0 1 44 3 1 1 99 1 6 1111 1111111 5 11111111111 5 5 1 1 444444 6666666666666666666666 0 33 5 0 000 6 6 6 99 77 1 77 5 5 66 5 5 2 2222 5 77 5 555 1 1 6 0 5 6 0 99 1 5 111111111111111111111111111111111111111111111111111111111111111111111111 1 33333 3 8888 1 888 2 2 77 44444 1 5 6 99 2 8 8 444 0 1 55555555555555555555 0 00000 444 0 0 8 8 3 6 11 11 7 00
lowQualScore : . . .... . . . . . ......... . .. . . . . . .. . . . ............ . . . . ....... . . .. .... .. .... .. . ... .. ... . . . . . . . ..... . . . .. . . . . .. .... . . . . .... . . . ... . . . . .. . . . .. . . .... ....... . ........... . . . . ...... ...................... . .. . . ... . . . .. .. . .. . . .. . . . .... . .. . ... . . . . . . . .. . . ........................................................................ . ..... . .... . ... . . .. ..... . . . .. . . . ... . . .................... . ..... ... . . . . . . .. .. . ..
lowQualScore : 3 3 7777 3 3 3 7 3 333333333 7 33 7 3 7 3 3 33 3 3 3 000000000000 3 0 0 5 5555555 8 2 00 8888 88 2222 22 2 222 55 000 2 0 5 5 0 2 7 77777 3 0 5 00 5 0 0 0 88 5555 0 2 5 0 2222 8 6 0 000 8 0 0 0 88 8 0 0 00 0 7 2222 7777777 7 11111111111 7 7 4 0 333333 9999999999999999999999 6 66 7 8 000 7 7 7 22 99 7 99 7 7 99 7 7 3 1111 7 99 7 777 0 7 7 7 7 7 3 22 0 7 999999999999999999999999999999999999999999999999999999999999999999999999 7 11111 0 1111 0 888 0 5 99 33333 7 7 7 22 5 0 0 888 8 0 00000000000000000000 8 00000 000 6 6 0 0 2 0 00 00 3 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--TGGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAACGAATACTCAT-CGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTAT--ATAA---GGAAAAGTGTA-AAGTTAGTGGGCTGT-GCATATCTTT-------AAAATGATGGAAATGAAAACCAN-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTTAGTGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AAGTAAGATAACTTGAA--TCAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATNCA-TGAGTTCTT--TATTTCATCTGTCCTTT-TATAAGCAAACTATGNCAAAAGATA-TA----ACAACCCTCTTTATTTTATTTTA---TCCTTGCATTGNG-TGTCCTTNTGATACANTNTNTAAN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCGTTCCCTTATT-AAT---AC--TATT-TC-AA-ACANA------ATA-----ATT-----T---G--TTAAAAGATAA--CATTACTTCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACGCTCAAA-CGTTGTA-GAAACTTCTG--TNAAGAGAGAC-A-TTAT-----T--A---T-----T----GT----A-G----T----------AG------TT----------GCTGT----NGAAGAGAAT--ACTGTTGA---GATTGCTTTTGCCACAC--A-----CGG-AACA-TACCAAG-ATTTCAACATTTCATGTTTCAATTT-ATTTC-AC-ATTTTTTTTTAAA--------------------TTTTCGACA-----AACA---AACATTC-TTCCG-CCTAACAGTATTCTCAATAC--TTTG--ATTAAAATTG-ATGTCATGATT
Reference ( family-970 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--TGGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAACGAATACTCAT-CGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATGCATAA---GGAAAAGTGTA-AAGTTAGTGGGNTGT-GCATATCTTT-------AAAATGATGGAAATGAAAACCAN-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGA-TGCAACTTAGTGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AAGTAAGATAACTTGAA--TCAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATNCA-TGAGTTCTT--TATTTCATCTGTCC--T-TATAAGCAAACTATGNCAAAAGATA-TA----ACAACCCTCTTTATTTTATTTTA---TCCTTGCATTGNG-TGTCCTTNTGATACANTNTNTAAN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCGTTCCCTTATT-AAT---AC--TATT-TC-AA-ACANA------ATA-----ATT-----T---G--TTAAAAGATAA--CATTATTTCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACGCTCAAA-CGTTGTA-GAAACTTCTG--TNAAGAGAGAC-A-TTAT-----T--A---T-----T----GT----A-G----T----------AG------TT----------GCTGT----NGAAGAGAAT--A-TGTNGA---GATTGCTTTTGCCACAC--A-----CGG-AACA-TACCAAG-ATTTCAACATTTCATGTTTCAATTT-ATTTC-AC-ATTTTTTTTTAAA--------------------TTTTCGACA-----AACA---AACATTC-TTCCG-CCTAACAGTATTCTCAATAC--TTTG--ATTAAAATTG-ATGTCATGATT
gi|1 : TGGGA-TCCTAAATTAGTTACAAAATAATT---CCTGTGAATACGGGTATG------CAG---ATGTATAGTGAGCAGACAC-CAT--------TAG-----------ACACAACGAAAACACAT-TGAACGAT------ATTTAGAGCCCACACTTCTCGTAAAATGAATAGTTTATAAGTATATATAGAGAAACATATGCAACATTTGGGTGATTGTA-AATTAAGAGATTTATTGAATATCTTTTTTTAAAAAAAAGGTATAAAGGAAGACCAA-TT--T-TTTTTT--ATTTTC----ATAAGTAAAATG---------------------------CCGTAGAATTTACCAATAAAGT-CGAAAGCGTAAGGG-AAATGAGATAAATT-AATTTCAAGTATTGACCAAGCG-TTC---------------ATTCA-TGAGTTCTT--CATT
gi|1 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagATCTGTCC--T-TATCAGCAAACTTTGCCAAAATATA-TT----ACAACCCTCTTTATTTTATTCTA---TTCTTACATAGGG-TGTCCTTCTCATACAGTATCTAAG-AACATTTCATTAATTAAG-TAATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCATTCCTTTATT-----------TATT-TC-AA-ACACA------ATAC----ATTAAG--T---G--TAAAAAAAAAAAGCATTACTTCCA-TGATAATTCT---GAGCTA-C-AC-GTGTAA--GTTATAA--GTAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATTACCGAT----ACTTTAG-TTA--CAT-TTC---CTCCTGAAAAGATATAAAATTTTACACTCAAA-CTTTGTA-GAAACTTCTG--TCAAGAGAGAC-AGTTAT-----T--AAAGG-----T----GT----A-G----TAGTTAGAGGCAG------TT----------GCTGT----GAAAGAGAAT--ATTGTTGA---GATTGATTTTGCCACAC--A-----CGG-AACA-TGC-----ACTGTACCA----ATGCTTCAATTT-ATTCA-AC-TTTTTTTTTAAAA--------------------TTTTCG---------ACA---AACATGC-TTCTG-CTTAACAGTATTCTCAATAC--TTTG--Acggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctatctgtccttatcagcaaactttgccaaaatatattacaaccctctttattttattctattcttacatagggtgtccttctcatacagtatctaagaacatttcattaattaagtaatggaaagaacaaaatatttcttcacattttccattcctttatttatttcaaacacaatacattaagtgtaaaaaaaaaaagcattacttccatgataattctgagctacacgtgtaagttataagtatggttgatcattgcaactaggaatattaccgatactttagttacatttcctcctgaaaagatataaaattttacactcaaactttgtagaaacttctgtcaagagagacagttattaaaggtgtagtagttagaggcagttgctgtgaaagagaatattgttgagattgattttgccacacacggaacatgcactgtaccaatgcttcaatttattcaactttttttttaaaattttcgacaaacatgcttctgcttaacagtattctcaatactttgac
gi|10 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagtgggatcctaaattagttacaaaataattcctgtgaatacgggtatgcagatgtatagtgagcagacaccattagacacaacgaaaacacattgaacgatatttagagcccacacttctcgtaaaatgaatagtttataagtatatatagagaaacatatgcaacatttgggtgattgtaaattaagagatttattgaatatctttttttaaaaaaaaggtataaaggaagaccaatttttttttattttcataagtaaaatgccgtagaatttaccaataaagtcgaaagcgtaagggaaatgagataaattaatttcaagtattgaccaagcgttcattcatgagttcttcattcggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctTTTT-CCGTTCCTTTATT-----------CATT-TC-AA-ACACAGC----ATACATGTATT-----TACTG--TTAAAAGATAA--AATTATTTCCA-TGAAAGTTCT---GAGCTG-C-CC-CTTTAA--GTTTTAA--GAAT--GGTT-GATC-ATTGCAAC--c
gi|11 : TAATTAATGTGATGGAAACAACACG--A-CATTT-------CTTCACATATT-CCGTTCCTCTATT---T---AC--TG------AATGCATA------ATA-----AATACTAGT---A--TGAAAGGACAA--CATTATTTCCA-TGAATGTTCT---
gi|12 : aa-TTTGAGTTTCATA-GAAAAGTCA-GAATTTCTT--TATTTTATCTTTCC--TAGATAAGAAAACTATGTCAA---ATA-TACACTATGATCATCTTTATTTTATTTTA---TTCTTGCAT
gi|13 : AA-CGTTGTA-GAAAATTCCG--TTGAGAGAGACAA-TTGT-----TAAA---A-----T----GT----A-GCATTT----------AGAAGCAATT----------ACTGTCGGGTGAAAAGAAT--ATTGTTGA---GATCGCTTTTG
gi|14 : AAGAGAGAC-A---AT-----T--G---T-----T----GA----A-GATG-T----------AG------T-----------ACT-T----AGAA-ACAATTGC-TGTCGAAAAGATTGCTTTTGCCACAC--A-----CAG-AAt
gi|15 : --TAGG-AAT-ATCACCAAT----AATCTAA-TTG--CAT-ATC---TTCCT-AAAAGATAT-AAATGTTACACTCAAA-C
gi|16 : tAT--ACTATTGA---GATTGCTTTGACTACAA--AGTTAACGG-AACA-TGCCTAG-ATTTCAACATTTCATGTTTtca
gi|2 : AAAGTGTTGGAA-TTCTGAATTAGTTACAATATG---GGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAATGAATACTCAT-CGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GT----ATAA---AGAAAAGTGTA-AAGTTAGTGGG-TGT-GCATATCTTT-------AAAATGATGGAAATGAAAACCAT-TT--TATTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTCAGTGTGTGAG--ATGTACCGTAGAATTTGCCAATAAATC-CGAAAGCGTGTGGG-AAGTAAGATAACTTGA----TAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATACA-TGAGTTCTT--TATTTCATCTGTCCTTT-TATAAGCAAACTATGACAAAAGATA-TA----ACAACCCTCTTTATTTT-TTTAA---TCCTTGCATTGCG-TGTCCTTATGACACACTTTGTAAT-AAACTTTCATTGATCAAT-TGATGGGAAGAACAAA--T-GATTT-------CTTCACATTTT-CCGTTCCCTTACTGAATAC-AC--GATT-TC-AA-ATAAA------ATA-----ATT-----T---G----GAAAGATAA--CATACTGTTCA-TGAATGTTCT---GAGTTG-C-AC-GTGTAA--GTTATAA--GCAT--CATT-GATC-ATTGCAAC--AAGG-AAT-ACCACTAAT----ACTGTAA-TTA--CAT-TTC---TTCATAAATAGATAT-GAATTGTACGCTCAAA-GGTTGTA-TAAACCTCTG--TTAAGAGAAAC-A--TA------C--A---T-----T----GT----A-G----T------------------TT----------GCTAT----AGAAGAGAAT------TACA---AA-------TGCCACAC--A-----CGT-AGCA-TACCAAT-ATTTCAACATTTCATGTTTCAATTT-ATTTC-AC-A-TTTCTTTTAAA--------------------CTTTCGACA-----AACA---AAC-CTC-TTCCG-CCTAACAGTGTTCTCAACAC--TTTG--ATTAAAATTG-ATGTCATGATT
gi|3 : taaccaatcaaataccgacatcttagttaattaagaaataattataagacaataacagacgaatttgaatggtataaaAAAGTGTTGGAAGTTCTGAATTAGTT-CAATATGC-TGGACCTGTAAATACGGG-ATGTAACTGCAGTATATATATA-TGAACAGACAAACA-ATAAATGGTAGCCGTAAAATCAACATAATGAATACTCATACGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTAT--ATAA----GAAAAGTGTACAAGTTAGTGGGCTGT-GCATAT-TTT-------AAAATGATTGAAATGAAAACCAT-CT--T-TTTTTTTGATTTCC----TTACGTAAAATGATTGCAACTTCGTGTGTGAGAAATGTACCGTAGAATTTGCCAATAAAATCCGAAAGCGT-TGGGAAAGTAAGATAACTTGAA--T-AAATATATATCAA-CGTTTTGAACTTGATAGGAAAATACATTGAGTTCTTTATATTTCATCTGTCCTTT-TATAAGCAAACTATGACAAAAGATATTA----ACAACCCTCTTTATT---TTTTAGATTCCTTGCA-TGCG-TGTCCTTATGAAACACTTTGTAAT-AAACTTTCATTGATCAAT-TAGTGGGAAGAACAAATGA-TGTTC-------TTTCACATTTTCCCGTTCCCTTACTGAATTACAC--GATT-TC-AATATAAA------ATA-----ATT-----G---G------AAGATAA--CA-TACTTTCA-TGAATGTtcattaggttt
gi|4 : AAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GTAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAATTAATACTTTCA-TTA--CAT-TTC---TTCCTAAAACGATAT-AAATTTTACATTCAAA-CTTTGTA-GAAACTTCTG--TGAAGAGAGAC-AGTTATAAAGGT--A---T-----TAGAAGTTTGAA-G----C----------AG------TT----------GTTGT----CGAAGAGAAT--ACTGTTGA---GATTGATTTTGCCACACGTA-----C-G-ATCA-TACCAAG-ATTTCAACATTTCATGTTTCAATTT-ATTTTAAC-ATTTTTTTTTAAATGTGTCAATTTATTTAACATTTTTTGAAATTTTCGACA---AACATTTGTTCTG-C---AC--CATTCTCAATAC--TTTG--ATT-AAATAGCATGTCTTGA
gi|5 : ttt---GAGTTG-CCAC-GTGTAA--GTTATAA--GCATCCATCT-GATCCATTGCAAC--AAGG-AATTACCACTAAT----ACTGTAA-TTATACAT-TTCC--TTCATAAATAGATAT-GAATTGTACGCTCAAA-GGTTGTATAAAACCTCTGGTTAAAGCGAACC-A-C-AT-----C--A---T-----T----GTC---A-G----T----------A-------TT----------GCTAT----AGAAGAGAAT------TACA---AAT-------GC-ACAC--A-----CGTTAGCAATACCAATTATTTCAACATTC--TGTTTCAATTTTATTTC-ACCATTTTCTTTTAAA--------------------CTTTCGACA-----AACACAAAAC-CTC-TTCCGGCCTAACAGTGTTCTCCATACACTTTGGTATTAAAATT--ATGTCATGATTat
gi|6 : tcTATAG--AAAT--GGCT-CATT-AGAGCAAT--TAGG-AAT-ATCACTTAC----ATTTTGACTTA--TAT-TTCCTTTTCTTAAAAAGATA---ATTTTTACACTCAAAACGTTCTA-GAAACACCTG--CCAAGCGAGAC-AATTAT-----T--AAT-TAAAGGT----GT----ACA----T----------AG------TTAGAAGCAGATGTTGT----CGAATAGAAT--AGTGTTGA---G-TTGCTTTGCCCACAC--A-----CAG-AACA-TACCAAG-ATTTCAACGTTTCATTTTTAAATTC-ATTTC-AC--TTTTT------G--------------------TTTTCGACA-----AACC---AACATGC-TTCCG-CCTAACTCTATTCTCAGTAC--TTTG--AT
gi|7 : TGATACAGTATTGAGCGAACCTTTTAT-AATTAAT-TGAATGAAAGAACAAA--ATTATTTGAAATAGCTTTATATTTC-CCGTTTCCTT-TT-AA----ACTTTATTATCAAA-ACACAGTCAGTATA-----AGT-----T---G--TTAAAAGATAAG-CATTATTTCCATTGAAAGTTTCATAGAGTTGTC-ACGGTGTAAAGGTTATTATCGCAT--GGTTGGATC-ATTGCAACATTAGGAAAT-ATCAC-AAT----ACTTTAA-TCA--CATATTC---TTC
gi|8 : CAACCCTCTTTATTTCAGTT-A---TCCTTACATTGGGGTGTCCTTCTG-------GTCTAGG-AATCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-CATTT-------CTTCACATTTC-CCGTTCCTTTATT-----------TATT-TC-AA-ACAGA------GTAT----ATT-----C---GTTTTAAAATAAAA--CATTACTTCCA-TAAAAGtcct
gi|9 : -GCATATCTTT-------AAAG-GATGGAAATGAAAGCCAAACTGAT-TTTTAT--GTTTCCGTAATTAAGTAAAATAAATGCAATTTATTGTACGAA--ATGTACCGCAGAATTTGTCAATAAAGT-AGAAGG-GGGTATG-AATTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCATGCACTTTAGTTTCGACTTAGGTACGCCACTGATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 4444 1 222222222 11 1 1 1 11 1 1 111 444444 1 1 1 3333333 11 1111 11 2222 111 1 1 33333 1 1 1 1 11 11 1 2222 111 1 1111 2222222 77777777777 1 222222 4444444444444444444444 11 111 1111 111 222222222222222222222222222222222222222222222222222222222222222222222222 11111 1 11111 66666666666666666666 22222 111 1 11 11 22
lowQualScore : 3 7 5555 7 7 7 6 3 111111111 6 88 0 3 6 3 3 88 3 3 666 555555 3 2 0 2 2222222 9 0 11 4444 33 1111 66 0 666 44 444 0 0 2 6 0 0 6 66666 3 0 2 11 2 0 1 0 33 88 1 55 0 1111 0 5 6 444 0 1 0 1 44 3 1 1 99 1 6 1111 1111111 5 11111111111 5 5 1 1 444444 6666666666666666666666 0 33 5 5 5 0 000 6 6 6 99 77 1 77 5 5 66 5 5 2 2222 5 77 5 555 1 1 6 0 5 6 0 99 1 5 111111111111111111111111111111111111111111111111111111111111111111111111 1 33333 0 3 888 3 5 77 44444 77 6 99 2 8 8 8 66 0 1 55555555555555555555 0 00000 444 0 0 8 8 3 6 11 11 7 00
lowQualScore : . . .... . . . . . ......... . .. . . . . . .. . . ... ...... . . . . ....... . . .. .... .. .... .. . ... .. ... . . . . . . . ..... . . . .. . . . . .. .. . .. . .... . . . ... . . . . .. . . . .. . . .... ....... . ........... . . . . ...... ...................... . .. . . . . ... . . . .. .. . .. . . .. . . . .... . .. . ... . . . . . . . .. . . ........................................................................ . ..... . . ... . . .. ..... .. . .. . . . . .. . . .................... . ..... ... . . . . . . .. .. . ..
lowQualScore : 3 3 7777 3 3 3 7 3 333333333 7 33 7 3 7 3 3 33 3 3 000 333333 3 0 0 5 5555555 8 2 00 8888 88 2222 88 2 222 55 000 2 0 5 5 0 2 7 77777 3 0 5 00 5 0 0 0 88 55 0 88 0 2222 8 6 0 000 8 0 0 0 88 8 0 0 00 0 7 2222 7777777 7 11111111111 7 7 4 0 333333 9999999999999999999999 6 66 0 7 7 8 000 7 7 7 22 99 7 99 7 7 99 7 7 3 1111 7 99 7 777 0 7 7 7 7 7 3 22 0 7 999999999999999999999999999999999999999999999999999999999999999999999999 7 11111 0 2 888 2 6 99 33333 44 7 22 5 0 0 0 88 8 0 00000000000000000000 8 00000 000 6 6 0 0 2 0 00 00 3 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--TGGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAACGAATACTCAT-CGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATATAA-----GGAAAAGTGTA-AAGTTAGTGGGCTGT-GCATATCTTT-------AAAATGATGGAAATGAAAACCAN-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTTAGTGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AAGTAAGATAACTTGAA--TCAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATNCA-TGAGTTCTT--TATTTCATCTGTCCTTTTATAAGCAAACTATGNCAAAAGATA-TA----ACAACCCTCTTTATTTTATTTTA---TCCTTGCATTGNG-TGTCCTTNTGATACANTNTNTAAN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCGTTCCCTTATT-AAT---AC--TATT-TC-AA-ACANA------ATA-----ATT-----T---G--TTAAAAGATAA--CATTACT-TCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACGCTCAAA-CGTTGTA-GAAACTTCTG--TNAAGAGAGAC-A-TTAT-----T--A---T-----T----GT----A-G----T----------AG------TT----------GCTGT----NGAAGAGAA-TACTGTTGA---GATTGCTTTTGCCACAC--A-----CG-GAAC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CATTTTTTTTTAAA--------------------TTTTCGACA-----AAC---AAACATTC-TTCC-GCCTAACAGTATTCTCAAT--ACTTTG--ATTAAAATTG-ATGTCATGATT
Reference ( family-970 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--TGGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAACGAATACTCAT-CGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATATAA-----GGAAAAGTGTA-AAGTTAGTGGGCTGT-GCATATCTTT-------AAAATGATGGAAATGAAAACCAN-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTTAGTGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AAGTAAGATAACTTGAA--TCAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATNCA-TGAGTTCTT--TATTTCATCTGTCCTTTTATAAGCAAACTATGNCAAAAGATA-TA----ACAACCCTCTTTATTTTATTTTA---TCCTTGCATTGNG-TGTCCTTNTGATACANTNTNTAAN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCGTTCCCTTATT-AAT---AC--TATT-TC-AA-ACANA------ATA-----ATT-----T---G--TTAAAAGATAA--CATTACT-TCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACGCTCAAA-CGTTGTA-GAAACTTCTG--TNAAGAGAGAC-A-TTAT-----T--A---T-----T----GT----A-G----T----------AG------TT----------GCTGT----NGAAGAGAA-TACTGTTGA---GATTGCTTTTGCCACAC--A-----CG-GAAC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CATTTTTTTTTAAA--------------------TTTTCGACA-----AAC---AAACATTC-TTCC-GCCTAACAGTATTCTCAAT--ACTTTG--ATTAAAATTG-ATGTCATGATT
gi|1 : TGGGA-TCCTAAATTAGTTACAAAATAATT---CCTGTGAATACGGGTATG------CAG---ATGTATAGTGAGCAGACAC-CAT--------TAG-----------ACACAACGAAAACACAT-TGAACGAT------ATTTAGAGCCCACACTTCTCGTAAAATGAATAGTTTATAAGTATATATAGAGAAACATATGCAACATTTGGGTGATTGTA-AATTAAGAGATTTATTGAATATCTTTTTTTAAAAAAAAGGTATAAAGGAAGACCAA-TT--T-TTTTTT--ATTTTC----ATAAGTAAAATG---------------------------CCGTAGAATTTACCAATAAAGT-CGAAAGCGTAAGGG-AAATGAGATAAATT-AATTTCAAGTATTGACCAAGCG-TTC---------------ATTCA-TGAGTTCTT--CATT
gi|1 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagATCTGTCCTT--ATCAGCAAACTTTGCCAAAATATA-TT----ACAACCCTCTTTATTTTATTCTA---TTCTTACATAGGG-TGTCCTTCTCATACAGTATCTAAG-AACATTTCATTAATTAAG-TAATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCATTCCTTTATT-----------TATT-TC-AA-ACACA------ATAC----ATTAAG--T---G--TAAAAAAAAAAAGCATTACT-TCCA-TGATAATTCT---GAGCTA-C-AC-GTGTAA--GTTATAA--GTAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATTACCGAT----ACTTTAG-TTA--CAT-TTC---CTCCTGAAAAGATATAAAATTTTACACTCAAA-CTTTGTA-GAAACTTCTG--TCAAGAGAGAC-AGTTAT-----T--AAAGG-----T----GT----A-G----TAGTTAGAGGCAG------TT----------GCTGT----GAAAGAGAA-TATTGTTGA---GATTGATTTTGCCACAC--A-----CG-GAAC-ATGC-----ACTGTACCA----ATGCTTCAA-TTTATTCA-A-CTTTTTTTTTAAAA--------------------TTTTCG---------AC---AAACATGC-TTCT-GCTTAACAGTATTCTCAAT--ACTTTG--Acggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctatctgtccttatcagcaaactttgccaaaatatattacaaccctctttattttattctattcttacatagggtgtccttctcatacagtatctaagaacatttcattaattaagtaatggaaagaacaaaatatttcttcacattttccattcctttatttatttcaaacacaatacattaagtgtaaaaaaaaaaagcattacttccatgataattctgagctacacgtgtaagttataagtatggttgatcattgcaactaggaatattaccgatactttagttacatttcctcctgaaaagatataaaattttacactcaaactttgtagaaacttctgtcaagagagacagttattaaaggtgtagtagttagaggcagttgctgtgaaagagaatattgttgagattgattttgccacacacggaacatgcactgtaccaatgcttcaatttattcaactttttttttaaaattttcgacaaacatgcttctgcttaacagtattctcaatactttgac
gi|10 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagtgggatcctaaattagttacaaaataattcctgtgaatacgggtatgcagatgtatagtgagcagacaccattagacacaacgaaaacacattgaacgatatttagagcccacacttctcgtaaaatgaatagtttataagtatatatagagaaacatatgcaacatttgggtgattgtaaattaagagatttattgaatatctttttttaaaaaaaaggtataaaggaagaccaatttttttttattttcataagtaaaatgccgtagaatttaccaataaagtcgaaagcgtaagggaaatgagataaattaatttcaagtattgaccaagcgttcattcatgagttcttcattcggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctTTTT-CCGTTCCTTTATT-----------CATT-TC-AA-ACACAGC----ATACATGTATT-----TACTG--TTAAAAGATAA--AATTATT-TCCA-TGAAAGTTCT---GAGCTG-C-CC-CTTTAA--GTTTTAA--GAAT--GGTT-GATC-ATTGCAAC--c
gi|11 : TAATTAATGTGATGGAAACAACACG--A-CATTT-------CTTCACATATT-CCGTTCCTCTATT---T---AC--TG------AATGCATA------ATA-----AATACTAGT---A--TGAAAGGACAA--CATTATT-TCCA-TGAATGTTCT---
gi|12 : aa-TTTGAGTTTCATA-GAAAAGTCA-GAATTTCTT--TATTTTATCTTTCCTAG-ATAAGAAAACTATGTCAAA---TA-TACACTATGATCATCTTTATTTTATTTTA---TTCTTGCAT
gi|13 : AA-CGTTGTA-GAAAATTCCG--TTGAGAGAGACAA-TTGT-----TAAA---A-----T----GT----A-GCATTT----------AGAAGCAATT----------ACTGTCGGGTGAAAAGAA-TATTGTTGA---GATCGCTTTTG
gi|14 : AAGAGAGAC-A---AT-----T--G---T-----T----GA----A-GATG-T----------AG------T-----------ACT-T----AGAAACAAT-TGCTGTCGAAAAGATTGCTTTTGCCACAC--A-----CA-GAAt
gi|15 : --TAGG-AAT-ATCACCAAT----AATCTAA-TTG--CAT-ATC---TTCCT-AAAAGATAT-AAATGTTACACTCAAA-C
gi|16 : tA-TACTATTGA---GATTGCTTTGACTACAA--AGTTAACG-GAAC-ATGCCTA-GATTTCAACATTTCATGTTTtca
gi|2 : AAAGTGTTGGAA-TTCTGAATTAGTTACAATATG---GGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAATGAATACTCAT-CGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-G--TATAA-----AGAAAAGTGTA-AAGTTAGTGGG-TGT-GCATATCTTT-------AAAATGATGGAAATGAAAACCAT-TT--TATTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTCAGTGTGTGAG--ATGTACCGTAGAATTTGCCAATAAATC-CGAAAGCGTGTGGG-AAGTAAGATAACTTGA----TAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATACA-TGAGTTCTT--TATTTCATCTGTCCTTTTATAAGCAAACTATGACAAAAGATA-TA----ACAACCCTCTTTATTTT-TTTAA---TCCTTGCATTGCG-TGTCCTTATGACACACTTTGTAAT-AAACTTTCATTGATCAAT-TGATGGGAAGAACAAA--T-GATTT-------CTTCACATTTT-CCGTTCCCTTACTGAATAC-AC--GATT-TC-AA-ATAAA------ATA-----ATT-----T---G----GAAAGATAA--CA-TACTGTTCA-TGAATGTTCT---GAGTTG-C-AC-GTGTAA--GTTATAA--GCAT--CATT-GATC-ATTGCAAC--AAGG-AAT-ACCACTAAT----ACTGTAA-TTA--CAT-TTC---TTCATAAATAGATAT-GAATTGTACGCTCAAA-GGTTGTA-TAAACCTCTG--TTAAGAGAAAC-A--TA------C--A---T-----T----GT----A-G----T------------------TT----------GCTAT----AGAAGAGAATTAC-----A---AA-------TGCCACAC--A-----CG-TAGC-ATACCAA-TATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CA-TTTCTTTTAAA--------------------CTTTCGACA-----AAC---AAAC-CTC-TTCC-GCCTAACAGTGTTCTCAAC--ACTTTG--ATTAAAATTG-ATGTCATGATT
gi|3 : taaccaatcaaataccgacatcttagttaattaagaaataattataagacaataacagacgaatttgaatggtataaaAAAGTGTTGGAAGTTCTGAATTAGTT-CAATATGC-TGGACCTGTAAATACGGG-ATGTAACTGCAGTATATATATA-TGAACAGACAAACA-ATAAATGGTAGCCGTAAAATCAACATAATGAATACTCATACGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATATAA------GAAAAGTGTACAAGTTAGTGGGCTGT-GCATAT-TTT-------AAAATGATTGAAATGAAAACCAT-CT--T-TTTTTTTGATTTCC----TTACGTAAAATGATTGCAACTTCGTGTGTGAGAAATGTACCGTAGAATTTGCCAATAAAATCCGAAAGCGT-TGGGAAAGTAAGATAACTTGAA--T-AAATATATATCAA-CGTTTTGAACTTGATAGGAAAATACATTGAGTTCTTTATATTTCATCTGTCCTTTTATAAGCAAACTATGACAAAAGATATTA----ACAACCCTCTTTATT---TTTTAGATTCCTTGCA-TGCG-TGTCCTTATGAAACACTTTGTAAT-AAACTTTCATTGATCAAT-TAGTGGGAAGAACAAATGA-TGTTC-------TTTCACATTTTCCCGTTCCCTTACTGAATTACAC--GATT-TC-AATATAAA------ATA-----ATT-----G---G------AAGATAA--CA-TACT-TTCA-TGAATGTtcattaggttt
gi|4 : AAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GTAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAATTAATACTTTCA-TTA--CAT-TTC---TTCCTAAAACGATAT-AAATTTTACATTCAAA-CTTTGTA-GAAACTTCTG--TGAAGAGAGAC-AGTTATAAAGGT--A---T-----TAGAAGTTTGAA-G----C----------AG------TT----------GTTGT----CGAAGAGAA-TACTGTTGA---GATTGATTTTGCCACACGTA-----C--GATC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTTAA-CATTTTTTTTTAAATGTGTCAATTTATTTAACATTTTTTGAAATTTTCGAC---AAACATTTGTTCT-GC---AC--CATTCTCAAT--ACTTTG--ATT-AAATAGCATGTCTTGA
gi|5 : ttt---GAGTTG-CCAC-GTGTAA--GTTATAA--GCATCCATCT-GATCCATTGCAAC--AAGG-AATTACCACTAAT----ACTGTAA-TTATACAT-TTCC--TTCATAAATAGATAT-GAATTGTACGCTCAAA-GGTTGTATAAAACCTCTGGTTAAAGCGAACC-A--CAT-----C--A---T-----T----GTC---A-G----T----------A-------TT----------GCTAT----AGAAGAGAATTAC-----A---AA-TG-------CACAC--A-----CGTTAGCAATACCAATTATTTCAACATTC--TGTTTCAATTTTATTTC-ACCATTTTCTTTTAAA--------------------CTTTCGACA-----AACACAAAAC-CTC-TTCCGGCCTAACAGTGTTCTCCATACACTTTGGTATTAAAATT--ATGTCATGATTat
gi|6 : tcTATAG--AAAT--GGCT-CATT-AGAGCAAT--TAGG-AAT-ATCACTTAC----ATTTTGACTTA--TAT-TTCCTTTTCTTAAAAAGATA---ATTTTTACACTCAAAACGTTCTA-GAAACACCTG--CCAAGCGAGAC-AATTAT-----T--AAT-TAAAGGT----GT----ACA----T----------AG------TTAGAAGCAGATGTTGT----CGAATAGAA-TAGTGTTGA---G-TTGCTTTGCCCACAC--A-----CA-GAAC-ATACCAA-GATTTCAACGTTTCATTTTTAAA-TTCATTTC-A-C-TTTTT------G--------------------TTTTCGACA-----AAC---CAACATGC-TTCC-GCCTAACTCTATTCTCAGT--ACTTTG--AT
gi|7 : TGATACAGTATTGAGCGAACCTTTTAT-AATTAAT-TGAATGAAAGAACAAA--ATTATTTGAAATAGCTTTATATTTC-CCGTTTCCTT-TT-AA----ACTTTATTATCAAA-ACACAGTCAGTATA-----AGT-----T---G--TTAAAAGATAAG-CATTATT-TCCATTGAAAGTTTCATAGAGTTGTC-ACGGTGTAAAGGTTATTATCGCAT--GGTTGGATC-ATTGCAACATTAGGAAAT-ATCAC-AAT----ACTTTAA-TCA--CATATTC---TTC
gi|8 : CAACCCTCTTTATTTCAGTT-A---TCCTTACATTGGGGTGTCCTTCTG-------GTCTAGG-AATCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-CATTT-------CTTCACATTTC-CCGTTCCTTTATT-----------TATT-TC-AA-ACAGA------GTAT----ATT-----C---GTTTTAAAATAAAA--CATTACT-TCCA-TAAAAGtcct
gi|9 : -GCATATCTTT-------AAAG-GATGGAAATGAAAGCCAAACTGAT-TTTTAT--GTTTCCGTAATTAAGTAAAATAAATGCAATTTATTGTACGAA--ATGTACCGCAGAATTTGTCAATAAAGT-AGAAGG-GGGTATG-AATTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCATGCACTTTAGTTTCGACTTAGGTACGCCACTGATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 4444 1 222222222 11 1 1 1 11 1 1 111 444444 1 1 1 3333333 11 1111 11 2222 111 1 1 33333 1 1 1 1 11 11 1 2222 111 1 1111 2222222 77777777777 1 222222 4444444444444444444444 11 111 1111 111 222222222222222222222222222222222222222222222222222222222222222222222222 11111 1 11111 66666666666666666666 22222 111 1 11 11 22
lowQualScore : 3 7 5555 7 7 7 6 3 111111111 6 88 0 3 6 3 3 88 3 3 666 555555 3 2 0 2 2222222 9 0 11 4444 33 1111 66 0 666 44 444 0 0 2 6 0 0 6 66666 3 0 2 11 2 0 1 0 33 88 1 55 0 1111 0 5 6 444 0 1 0 1 44 3 1 1 99 1 6 1111 1111111 5 11111111111 5 5 1 1 444444 6666666666666666666666 0 33 5 5 5 0 000 6 6 6 99 77 1 77 5 5 66 5 5 2 2222 5 77 5 555 1 1 6 0 5 6 0 99 1 5 111111111111111111111111111111111111111111111111111111111111111111111111 1 33333 0 3 888 3 5 77 44444 77 6 99 2 8 8 8 66 0 1 55555555555555555555 0 00000 444 0 0 8 8 3 6 11 11 7 00
lowQualScore : . . .... . . . . . ......... . .. . . . . . .. . . ... ...... . . . . ....... . . .. .... .. .... .. . ... .. ... . . . . . . . ..... . . . .. . . . . .. .. . .. . .... . . . ... . . . . .. . . . .. . . .... ....... . ........... . . . . ...... ...................... . .. . . . . ... . . . .. .. . .. . . .. . . . .... . .. . ... . . . . . . . .. . . ........................................................................ . ..... . . ... . . .. ..... .. . .. . . . . .. . . .................... . ..... ... . . . . . . .. .. . ..
lowQualScore : 3 3 7777 3 3 3 7 3 333333333 7 33 7 3 7 3 3 33 3 3 000 333333 3 0 0 5 5555555 8 2 00 8888 88 2222 88 2 222 55 000 2 0 5 5 0 2 7 77777 3 0 5 00 5 0 0 0 88 55 0 88 0 2222 8 6 0 000 8 0 0 0 88 8 0 0 00 0 7 2222 7777777 7 11111111111 7 7 4 0 333333 9999999999999999999999 6 66 0 7 7 8 000 7 7 7 22 99 7 99 7 7 99 7 7 3 1111 7 99 7 777 0 7 7 7 7 7 3 22 0 7 999999999999999999999999999999999999999999999999999999999999999999999999 7 11111 0 2 888 2 6 99 33333 44 7 22 5 0 0 0 88 8 0 00000000000000000000 8 00000 000 6 6 0 0 2 0 00 00 3 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--TGGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAACGAATACTCAT-CGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATATAA-----GGAAAAGTGTA-AAGTTAGTGGGCTGT-GCATATCTTT-------AAAATGATGGAAATGAAAACCAN-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTTAGTGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AAGTAAGATAACTTGAA--TCAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATNCA-TGAGTTCTT--TATTTCATCTGTCCTTTTATAAGCAAACTATGNCAAAAGATA-TA----ACAACCCTCTTTATTTTATTTTA---TCCTTGCATTGNG-TGTCCTTNTGATACANTNTNTAAN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCGTTCCCTTATT-AAT---AC--TATT-TC-AA-ACANA------ATA-----ATT-----T---G--TTAAAAGATAA--CATTACT-TCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACGCTCAAA-CGTTGTA-GAAACTTCTG--TNAAGAGAGAC-A-TTAT-----T--A---T-----T----GT----A-G----T----------AG------TT----------GCTGT----NGAAGAGAA-TACTGTTGA---GATTGCTTTTGCCACAC--A-----CG-GAAC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CATTTTTTTTTAAA--------------------TTTTCGACA-----AAC---AAACATTC-TTCC-GCCTAACAGTATTCTCAAT--ACTTTG--ATTAAAATTG-ATGTCATGATT
Reference ( family-970 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--TGGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAACGAATACTCAT-CGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATATAA-----GGAAAAGTGTA-AAGTTAGTGGGCTGT-GCATATCTTT-------AAAATGATGGAAATGAAAACCAN-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTTAGTGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AAGTAAGATAACTTGAA--TCAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATNCA-TGAGTTCTT--TATTTCATCTGTCCTTTTATAAGCAAACTATGNCAAAAGATA-TA----ACAACCCTCTTTATTTTATTTTA---TCCTTGCATTGNG-TGTCCTTNTGATACANTNTNTAAN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCGTTCCCTTATT-AAT---AC--TATT-TC-AA-ACANA------ATA-----ATT-----T---G--TTAAAAGATAA--CATTACT-TCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACGCTCAAA-CGTTGTA-GAAACTTCTG--TNAAGAGAGAC-A-TTAT-----T--A---T-----T----GT----A-G----T----------AG------TT----------GCTGT----NGAAGAGAA-TACTGTTGA---GATTGCTTTTGCCACAC--A-----CG-GAAC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CATTTTTTTTTAAA--------------------TTTTCGACA-----AAC---AAACATTC-TTCC-GCCTAACAGTATTCTCAAT--ACTTTG--ATTAAAATTG-ATGTCATGATT
gi|1 : TGGGA-TCCTAAATTAGTTACAAAATAATT---CCTGTGAATACGGGTATG------CAG---ATGTATAGTGAGCAGACAC-CAT--------TAG-----------ACACAACGAAAACACAT-TGAACGAT------ATTTAGAGCCCACACTTCTCGTAAAATGAATAGTTTATAAGTATATATAGAGAAACATATGCAACATTTGGGTGATTGTA-AATTAAGAGATTTATTGAATATCTTTTTTTAAAAAAAAGGTATAAAGGAAGACCAA-TT--T-TTTTTT--ATTTTC----ATAAGTAAAATG---------------------------CCGTAGAATTTACCAATAAAGT-CGAAAGCGTAAGGG-AAATGAGATAAATT-AATTTCAAGTATTGACCAAGCG-TTC---------------ATTCA-TGAGTTCTT--CATT
gi|1 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagATCTGTCCTT--ATCAGCAAACTTTGCCAAAATATA-TT----ACAACCCTCTTTATTTTATTCTA---TTCTTACATAGGG-TGTCCTTCTCATACAGTATCTAAG-AACATTTCATTAATTAAG-TAATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCATTCCTTTATT-----------TATT-TC-AA-ACACA------ATAC----ATTAAG--T---G--TAAAAAAAAAAAGCATTACT-TCCA-TGATAATTCT---GAGCTA-C-AC-GTGTAA--GTTATAA--GTAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATTACCGAT----ACTTTAG-TTA--CAT-TTC---CTCCTGAAAAGATATAAAATTTTACACTCAAA-CTTTGTA-GAAACTTCTG--TCAAGAGAGAC-AGTTAT-----T--AAAGG-----T----GT----A-G----TAGTTAGAGGCAG------TT----------GCTGT----GAAAGAGAA-TATTGTTGA---GATTGATTTTGCCACAC--A-----CG-GAAC-ATGC-----ACTGTACCA----ATGCTTCAA-TTTATTCA-A-CTTTTTTTTTAAAA--------------------TTTTCG---------AC---AAACATGC-TTCT-GCTTAACAGTATTCTCAAT--ACTTTG--Acggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctatctgtccttatcagcaaactttgccaaaatatattacaaccctctttattttattctattcttacatagggtgtccttctcatacagtatctaagaacatttcattaattaagtaatggaaagaacaaaatatttcttcacattttccattcctttatttatttcaaacacaatacattaagtgtaaaaaaaaaaagcattacttccatgataattctgagctacacgtgtaagttataagtatggttgatcattgcaactaggaatattaccgatactttagttacatttcctcctgaaaagatataaaattttacactcaaactttgtagaaacttctgtcaagagagacagttattaaaggtgtagtagttagaggcagttgctgtgaaagagaatattgttgagattgattttgccacacacggaacatgcactgtaccaatgcttcaatttattcaactttttttttaaaattttcgacaaacatgcttctgcttaacagtattctcaatactttgac
gi|10 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagtgggatcctaaattagttacaaaataattcctgtgaatacgggtatgcagatgtatagtgagcagacaccattagacacaacgaaaacacattgaacgatatttagagcccacacttctcgtaaaatgaatagtttataagtatatatagagaaacatatgcaacatttgggtgattgtaaattaagagatttattgaatatctttttttaaaaaaaaggtataaaggaagaccaatttttttttattttcataagtaaaatgccgtagaatttaccaataaagtcgaaagcgtaagggaaatgagataaattaatttcaagtattgaccaagcgttcattcatgagttcttcattcggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctTTTT-CCGTTCCTTTATT-----------CATT-TC-AA-ACACAGC----ATACATGTATT-----TACTG--TTAAAAGATAA--AATTATT-TCCA-TGAAAGTTCT---GAGCTG-C-CC-CTTTAA--GTTTTAA--GAAT--GGTT-GATC-ATTGCAAC--c
gi|11 : TAATTAATGTGATGGAAACAACACG--A-CATTT-------CTTCACATATT-CCGTTCCTCTATT---T---AC--TG------AATGCATA------ATA-----AATACTAGT---A--TGAAAGGACAA--CATTATT-TCCA-TGAATGTTCT---
gi|12 : aa-TTTGAGTTTCATA-GAAAAGTCA-GAATTTCTT--TATTTTATCTTTCCTAG-ATAAGAAAACTATGTCAAA---TA-TACACTATGATCATCTTTATTTTATTTTA---TTCTTGCAT
gi|13 : AA-CGTTGTA-GAAAATTCCG--TTGAGAGAGACAA-TTGT-----TAAA---A-----T----GT----A-GCATTT----------AGAAGCAATT----------ACTGTCGGGTGAAAAGAA-TATTGTTGA---GATCGCTTTTG
gi|14 : AAGAGAGAC-A---AT-----T--G---T-----T----GA----A-GATG-T----------AG------T-----------ACT-T----AGAAACAAT-TGCTGTCGAAAAGATTGCTTTTGCCACAC--A-----CA-GAAt
gi|15 : --TAGG-AAT-ATCACCAAT----AATCTAA-TTG--CAT-ATC---TTCCT-AAAAGATAT-AAATGTTACACTCAAA-C
gi|16 : tA-TACTATTGA---GATTGCTTTGACTACAA--AGTTAACG-GAAC-ATGCCTA-GATTTCAACATTTCATGTTTtca
gi|2 : AAAGTGTTGGAA-TTCTGAATTAGTTACAATATG---GGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAATGAATACTCAT-CGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-G--TATAA-----AGAAAAGTGTA-AAGTTAGTGGG-TGT-GCATATCTTT-------AAAATGATGGAAATGAAAACCAT-TT--TATTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTCAGTGTGTGAG--ATGTACCGTAGAATTTGCCAATAAATC-CGAAAGCGTGTGGG-AAGTAAGATAACTTGA----TAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATACA-TGAGTTCTT--TATTTCATCTGTCCTTTTATAAGCAAACTATGACAAAAGATA-TA----ACAACCCTCTTTATTTT-TTTAA---TCCTTGCATTGCG-TGTCCTTATGACACACTTTGTAAT-AAACTTTCATTGATCAAT-TGATGGGAAGAACAAA--T-GATTT-------CTTCACATTTT-CCGTTCCCTTACTGAATAC-AC--GATT-TC-AA-ATAAA------ATA-----ATT-----T---G----GAAAGATAA--CA-TACTGTTCA-TGAATGTTCT---GAGTTG-C-AC-GTGTAA--GTTATAA--GCAT--CATT-GATC-ATTGCAAC--AAGG-AAT-ACCACTAAT----ACTGTAA-TTA--CAT-TTC---TTCATAAATAGATAT-GAATTGTACGCTCAAA-GGTTGTA-TAAACCTCTG--TTAAGAGAAAC-A--TA------C--A---T-----T----GT----A-G----T------------------TT----------GCTAT----AGAAGAGAATTAC-----A---AA-------TGCCACAC--A-----CG-TAGC-ATACCAA-TATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CA-TTTCTTTTAAA--------------------CTTTCGACA-----AAC---AAAC-CTC-TTCC-GCCTAACAGTGTTCTCAAC--ACTTTG--ATTAAAATTG-ATGTCATGATT
gi|3 : taaccaatcaaataccgacatcttagttaattaagaaataattataagacaataacagacgaatttgaatggtataaaAAAGTGTTGGAAGTTCTGAATTAGTT-CAATATGC-TGGACCTGTAAATACGGG-ATGTAACTGCAGTATATATATA-TGAACAGACAAACA-ATAAATGGTAGCCGTAAAATCAACATAATGAATACTCATACGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATATAA------GAAAAGTGTACAAGTTAGTGGGCTGT-GCATAT-TTT-------AAAATGATTGAAATGAAAACCAT-CT--T-TTTTTTTGATTTCC----TTACGTAAAATGATTGCAACTTCGTGTGTGAGAAATGTACCGTAGAATTTGCCAATAAAATCCGAAAGCGT-TGGGAAAGTAAGATAACTTGAA--T-AAATATATATCAA-CGTTTTGAACTTGATAGGAAAATACATTGAGTTCTTTATATTTCATCTGTCCTTTTATAAGCAAACTATGACAAAAGATATTA----ACAACCCTCTTTATT---TTTTAGATTCCTTGCA-TGCG-TGTCCTTATGAAACACTTTGTAAT-AAACTTTCATTGATCAAT-TAGTGGGAAGAACAAATGA-TGTTC-------TTTCACATTTTCCCGTTCCCTTACTGAATTACAC--GATT-TC-AATATAAA------ATA-----ATT-----G---G------AAGATAA--CA-TACT-TTCA-TGAATGTtcattaggttt
gi|4 : AAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GTAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAATTAATACTTTCA-TTA--CAT-TTC---TTCCTAAAACGATAT-AAATTTTACATTCAAA-CTTTGTA-GAAACTTCTG--TGAAGAGAGAC-AGTTATAAAGGT--A---T-----TAGAAGTTTGAA-G----C----------AG------TT----------GTTGT----CGAAGAGAA-TACTGTTGA---GATTGATTTTGCCACACGTA-----C--GATC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTTAA-CATTTTTTTTTAAATGTGTCAATTTATTTAACATTTTTTGAAATTTTCGAC---AAACATTTGTTCT-GC---AC--CATTCTCAAT--ACTTTG--ATT-AAATAGCATGTCTTGA
gi|5 : ttt---GAGTTG-CCAC-GTGTAA--GTTATAA--GCATCCATCT-GATCCATTGCAAC--AAGG-AATTACCACTAAT----ACTGTAA-TTATACAT-TTCC--TTCATAAATAGATAT-GAATTGTACGCTCAAA-GGTTGTATAAAACCTCTGGTTAAAGCGAACC-A--CAT-----C--A---T-----T----GTC---A-G----T----------A-------TT----------GCTAT----AGAAGAGAATTAC-----A---AA-TG-------CACAC--A-----CGTTAGCAATACCAATTATTTCAACATTC--TGTTTCAATTTTATTTC-ACCATTTTCTTTTAAA--------------------CTTTCGACA-----AACACAAAAC-CTC-TTCCGGCCTAACAGTGTTCTCCATACACTTTGGTATTAAAATT--ATGTCATGATTat
gi|6 : tcTATAG--AAAT--GGCT-CATT-AGAGCAAT--TAGG-AAT-ATCACTTAC----ATTTTGACTTA--TAT-TTCCTTTTCTTAAAAAGATA---ATTTTTACACTCAAAACGTTCTA-GAAACACCTG--CCAAGCGAGAC-AATTAT-----T--AAT-TAAAGGT----GT----ACA----T----------AG------TTAGAAGCAGATGTTGT----CGAATAGAA-TAGTGTTGA---G-TTGCTTTGCCCACAC--A-----CA-GAAC-ATACCAA-GATTTCAACGTTTCATTTTTAAA-TTCATTTC-A-C-TTTTT------G--------------------TTTTCGACA-----AAC---CAACATGC-TTCC-GCCTAACTCTATTCTCAGT--ACTTTG--AT
gi|7 : TGATACAGTATTGAGCGAACCTTTTAT-AATTAAT-TGAATGAAAGAACAAA--ATTATTTGAAATAGCTTTATATTTC-CCGTTTCCTT-TT-AA----ACTTTATTATCAAA-ACACAGTCAGTATA-----AGT-----T---G--TTAAAAGATAAG-CATTATT-TCCATTGAAAGTTTCATAGAGTTGTC-ACGGTGTAAAGGTTATTATCGCAT--GGTTGGATC-ATTGCAACATTAGGAAAT-ATCAC-AAT----ACTTTAA-TCA--CATATTC---TTC
gi|8 : CAACCCTCTTTATTTCAGTT-A---TCCTTACATTGGGGTGTCCTTCTG-------GTCTAGG-AATCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-CATTT-------CTTCACATTTC-CCGTTCCTTTATT-----------TATT-TC-AA-ACAGA------GTAT----ATT-----C---GTTTTAAAATAAAA--CATTACT-TCCA-TAAAAGtcct
gi|9 : -GCATATCTTT-------AAAG-GATGGAAATGAAAGCCAAACTGAT-TTTTAT--GTTTCCGTAATTAAGTAAAATAAATGCAATTTATTGTACGAA--ATGTACCGCAGAATTTGTCAATAAAGT-AGAAGG-GGGTATG-AATTAA
blockSeqs : G A CTG T T T G A TATAAATG C AT A G . . . . . GT A C C . C . T AA GAT TG GTAA AT CAG GT GAA C C G A G AT . T G GT C G T T TA TT T AG T CACT A T GAT C G A AC C T G CG A G TGA GAAATAG C GAATTACAC A A T C GTCAGT CATGTATTTACTGTT G T G T ATA T C G AG TC A CC G C AT A T C TAAT C TA A CTT C A . A T GT T A ATTATTAATTAAAGGTGTACATAGTTAGAAGCAGAT G CGGGT T T AAA T C GT GTTAA GT A TT C T A C AT T TGTGTCAATTTATTTAACAT TTTTC ACA A G G C A AC GT A GC
blockSeqs : . . G . T T . . ATAAATGG C . . G . . . . . G . . . . C . T T TA . . AT TCG GT G . C G . G T . . G AC G . A . . TT A AG . . A A . C . A AA C T G T A . AT . . GAATACAC . . T T GC AATACTAGTATG . T . . . . . . . . C . . . . . . T . . . . C A A . . . . T . GTTATAAAGGTATTAGAAGTTTGAAGCAGTT A A T T . T C . . A . G C . . . AT T . . . A . . C A . . . .
blockSeqs : . . . . T T . . AA TAT AC A . . . . . G AC G . A . . G A . . . . T . G . C AT G A T T C . A . . AAACTT . . . A . TATTCGTTTT . T . . . . . . . . T . . . . . . T . . . . . C A . . . . G . TTGTTAAAATGTAGCATTTAGAAGCAATT G A . T . T C . . G . T C . . . A T . . . . . . C T . .
blockSeqs : . . . . . G C G T . T . . TAC . . . A . AGTTGTT . T . . . . . . . . C . . . . . . T . . . . . A A . . . . A . ATTGTTGAAGATGTAGT A C . T . T A . . G . G C . . . T . . . . . . . . . . .
blockSeqs : . A . . . . . . C . ATTTG . . . . . . . . . . A . . . . . . T . . . . . T . . . . . C . CATCATTGTCAGTATT G A . T . T C . . A . G .
blockSeqs : . . . . . G . ATTGG . . . . . . C . . . . . . . . . . . . . . TACATTGTAGTTT . C . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ATTTGTTT************** ** G* AT
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--TGGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAACGAATACTCAT-CGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATATAA-----GGAAAAGTGTA-AAGTTAGTGGGCTGT-GCATATCTTT-------AAAATGATGGAAATGAAAACCAN-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTTAGTGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AAGTAAGATAACTTGAA--TCAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATNCA-TGAGTTCTT--TATTTCATCTGTCCTTTTATAAGCAAACTATGNCAAAAGATA-TA----ACAACCCTCTTTATTTTATTTTA---TCCTTGCATTGNG-TGTCCTTNTGATACANTNTNTAAN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCGTTCCCTTATT-AAT---AC--TATT-TC-AA-ACANA------ATA-----ATT-----T---G--TTAAAAGATAA--CATTACT-TCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACGCTCAAA-CGTTGTA-GAAACTTCTG--TNAAGAGAGAC-A-TTAT-----T--A---T-----T----GT----A-G----T----------AG------TT----------GCTGT----NGAAGAGAA-TACTGTTGA---GATTGCTTTTGCCACAC--A-----CG-GAAC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CATTTTTTTTTAAA--------------------TTTTCGACA-----AAC---AAACATTC-TTCC-GCCTAACAGTATTCTCAAT--ACTTTG--ATTAAAATTG-ATGTCATGATT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--TGGACCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAACGAATACTCAT-CGAACGATGAAATAATTCAT-GTCTTT-CTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATATAA-----GGAAAAGTGTA-AAGTTAGTGGGCTGT-GCATATCTTT-------AAAATGATGGAAATGAAAACCAN-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTTAGTGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AAGTAAGATAACTTGAA--TCAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATNCA-TGAGTTCTT--TATTTCATCTGTCCTTTTATAAGCAAACTATGNCAAAAGATA-TA----ACAACCCTCTTTATTTTATTTTA---TCCTTGCATTGNG-TGTCCTTNTGATACANTNTNTAAN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCGTTCCCTTATT-AAT---AC--TATT-TC-AA-ACANA------ATAATTTGTTT--------------AAAAGATAA--CATTACT-TCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACGCTCAAA-CGTTGTA-GAAACTTCTG--TNAAGAGAGAC-A-TTAT-----T--A---T-----T----GT----A-G----T----------AG------TT----------GCTGT----NGAAGAGAA-TACTGTTGA---GATTGCTTTTGCCACAC--A-----CG-GAAC-ATACCAAG-ATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CATTTTTTTTTAAA--------------------TTTTCGACA-----AAC---AAACATTC-TTCC-GCCTAACAGTATTCTCAAT--ACTTTG--ATTAAAATTG-ATGTCATGATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCATGCACTTTAGTTTCGACTTAGGTACGCCACTGATCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 33333333 1 222222222 11 1 1 1 11 1 1 1 444444444 1 1 1 3333333 11 1111 11 2222 111 1 1 33333 1 1 1 1 11 11 1 2222 111 1 1111 2222222 777777777777777777777777777777777777777777777777777777 111 111 1111 111 2222222222222222222222222222222222222222222222222222222222222222222222 1111 1 11111 66666666666666666666 22222 111 1 11 11 22
lowQualScore : 3 7 88888888 7 7 7 6 3 111111111 6 88 0 3 6 3 3 88 3 3 3 777777777 3 2 3 2 2222222 9 0 11 4444 33 1111 66 0 666 44 444 0 0 2 6 0 0 6 66666 3 0 2 11 2 0 1 0 33 88 1 55 0 1111 0 5 6 444 0 1 0 1 44 3 1 1 99 1 6 1111 1111111 5 222222222222222222222222222222222222222222222222222222 0 555 5 5 5 0 000 6 6 6 99 77 1 77 5 5 66 5 5 2 2222 5 77 5 555 1 1 6 0 5 6 0 99 1 7777777777777777777777777777777777777777777777777777777777777777777777 1 1 2222 0 3 888 3 5 77 44444 77 6 99 2 8 8 8 66 0 1 55555555555555555555 0 00000 444 0 0 8 8 3 6 11 11 7 00
lowQualScore : . . ........ . . . . . ......... . .. . . . . . .. . . . ......... . . . . ....... . . .. .... .. .... .. . ... .. ... . . . . . . . ..... . . . .. . . . . .. .. . .. . .... . . . ... . . . . .. . . . .. . . .... ....... . ...................................................... . ... . . . . ... . . . .. .. . .. . . .. . . . .... . .. . ... . . . . . . . .. . ...................................................................... . . .... . . ... . . .. ..... .. . .. . . . . .. . . .................... . ..... ... . . . . . . .. .. . ..
lowQualScore : 3 3 33333333 3 3 3 7 3 333333333 7 33 7 3 7 3 3 33 3 3 3 777777777 3 0 3 5 5555555 8 2 00 8888 88 2222 88 2 222 55 000 2 0 5 5 0 2 7 77777 3 0 5 00 5 0 0 0 88 55 0 88 0 2222 8 6 0 000 8 0 0 0 88 8 0 0 00 0 7 2222 7777777 7 000000000000000000000000000000000000000000000000000000 6 777 0 7 7 8 000 7 7 7 22 99 7 99 7 7 99 7 7 3 1111 7 99 7 777 0 7 7 7 7 7 3 22 0 6666666666666666666666666666666666666666666666666666666666666666666666 7 0 1111 0 2 888 2 6 99 33333 44 7 22 5 0 0 0 88 8 0 00000000000000000000 8 00000 000 6 6 0 0 2 0 00 00 3 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--GGA--CCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAACGAATACTCAT-CGAACGATGAAATAATTCAT-GTCT-TTCTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATACAA-----GGAAAAGTGTA-AAGTTAGTGGGCTG-TGCATATCTTT-------AAAATGATGGAAATGAAAACCAN-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTTAGTGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AAGTAAGATAACTTGAA--TCAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATNCA-TGAGTTCTT--TATTTCATCTGTCCTTTTATAAGCAAACTATGNCAAAAGATA-TA----ACAACCCTCTTTATTTTATTTTA---TCCTTGCATTGNG-TGTCCTTNTGATACANTNTNTAAN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCGTTCCCTTATT-AAT---AC--TATT-TC-AA-ACANA------ATA-----ATT-NG-T-T--TAAAAGATAA---CATTACT-TCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACGCTCAAA-CGTTGTA-GAAACTTCTG--TNAAGAGAGACAGTTAT-----TA---T-----T----GT----A-G----T----------AG------TT----------GCTGTNG----AAGAGAA-TACTGTTGA---GATTGCTTTTGCCACAC--A-----CG-GAAC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CATTTTTTTTTAAA--------------------TTTTCGACA-----AAC---AAACATTC-TTCC-GCCTAACAGTATTCTCAAT--ACTTTG--ATTAAAATTG-ATGTCATGATT
Reference ( family-970 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGTTGGAA-TTCTGAATTAGTTACAATATG-TGGA--CCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAACGAATACTCAT-CGAACGATGAAATAATTCAT-GTCT-TTCTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATATAA-----GGAAAAGTGTA-AAGTTAGTGGGCTG-TGCATATCTTT-------AAAATGATGGAAATGAAAACCAN-CT--T-TTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTTAGTGTGCGAG--ATGTACCGTAGAATTTGCCAATAAAGT-CGAAAGCGTGTGGG-AAGTAAGATAACTTGAA--TCAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATNCA-TGAGTTCTT--TATTTCATCTGTCCTTTTATAAGCAAACTATGNCAAAAGATA-TA----ACAACCCTCTTTATTTTATTTTA---TCCTTGCATTGNG-TGTCCTTNTGATACANTNTNTAAN-AANCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCGTTCCCTTATT-AAT---AC--TATT-TC-AA-ACANA------ATA-----ATT-TG-T-T--TAAAAGATAA---CATTACT-TCCA-TGAAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GCAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAAT----ACTTTAA-TTA--CAT-TTC---TTCCTAAAAAGATAT-AAATTTTACGCTCAAA-CGTTGTA-GAAACTTCTG--TNAAGAGAGACA-TTAT-----TA---T-----T----GT----A-G----T----------AG------TT----------GCTGTNG----AAGAGAA-TACTGTTGA---GATTGCTTTTGCCACAC--A-----CG-GAAC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CATTTTTTTTTAAA--------------------TTTTCGACA-----AAC---AAACATTC-TTCC-GCCTAACAGTATTCTCAAT--ACTTTG--ATTAAAATTG-ATGTCATGATT
gi|1 : TGGGA-TCCTAAATTAGTTACAAAAT----AATTCCTGTGAATACGGGTA------TGCAG---ATGTATAGTGAGCAGACAC-CAT--------TAG-----------ACACAACGAAAACACAT-TGAACGAT------ATTTAGAGCCCACACTTCTCGTAAAATGAATAGTTTATAAGTATATATAGAGAAACATATGCAACATTTGGGTGATTGTA-AATTAAGAGATTTATTGAATATCTTTTTTTAAAAAAAAGGTATAAAGGAAGACCAA-TT--T-TTTTTT--ATTTTC----ATAAGTAAAATG---------------------------CCGTAGAATTTACCAATAAAGT-CGAAAGCGTAAGGG-AAATGAGATAAATT-AATTTCAAGTATTGACCAAGCG-TTC---------------ATTCA-TGAGTTCTT--CATT
gi|1 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagATCTGTCCTT--ATCAGCAAACTTTGCCAAAATATA-TT----ACAACCCTCTTTATTTTATTCTA---TTCTTACATAGGG-TGTCCTTCTCATACAGTATCTAAG-AACATTTCATTAATTAAG-TAATGGAAAGAACAAA--A-TATTT-------CTTCACATTTT-CCATTCCTTTATT-----------TATT-TC-AA-ACACA------ATAC----ATTAAG-T-G--TAAAAAAAAAAAGCATTACT-TCCA-TGATAATTCT---GAGCTA-C-AC-GTGTAA--GTTATAA--GTAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATTACCGAT----ACTTTAG-TTA--CAT-TTC---CTCCTGAAAAGATATAAAATTTTACACTCAAA-CTTTGTA-GAAACTTCTG--TCAAGAGAGACAGTTAT-----TAAAGG-----T----GT----A-G----TAGTTAGAGGCAG------TT----------GCTGTGA----AAGAGAA-TATTGTTGA---GATTGATTTTGCCACAC--A-----CG-GAAC-ATGC-----ACTGTACCA----ATGCTTCAA-TTTATTCA-A-CTTTTTTTTTAAAA--------------------TTTTCG---------AC---AAACATGC-TTCT-GCTTAACAGTATTCTCAAT--ACTTTG--Acggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctatctgtccttatcagcaaactttgccaaaatatattacaaccctctttattttattctattcttacatagggtgtccttctcatacagtatctaagaacatttcattaattaagtaatggaaagaacaaaatatttcttcacattttccattcctttatttatttcaaacacaatacattaagtgtaaaaaaaaaaagcattacttccatgataattctgagctacacgtgtaagttataagtatggttgatcattgcaactaggaatattaccgatactttagttacatttcctcctgaaaagatataaaattttacactcaaactttgtagaaacttctgtcaagagagacagttattaaaggtgtagtagttagaggcagttgctgtgaaagagaatattgttgagattgattttgccacacacggaacatgcactgtaccaatgcttcaatttattcaactttttttttaaaattttcgacaaacatgcttctgcttaacagtattctcaatactttgac
gi|10 : agtcaatgtaaatacacgtatcttaatcaacacatatggtggtaacaggaattgataatatttgacaatcgtctgtaggttataaatgtcttagagtgggatcctaaattagttacaaaataattcctgtgaatacgggtatgcagatgtatagtgagcagacaccattagacacaacgaaaacacattgaacgatatttagagcccacacttctcgtaaaatgaatagtttataagtatatatagagaaacatatgcaacatttgggtgattgtaaattaagagatttattgaatatctttttttaaaaaaaaggtataaaggaagaccaatttttttttattttcataagtaaaatgccgtagaatttaccaataaagtcgaaagcgtaagggaaatgagataaattaatttcaagtattgaccaagcgttcattcatgagttcttcattcggtcgcatgccccctgtccgctagagcatgcactttagttttggcgtaggtacaccactgctTTTT-CCGTTCCTTTATT-----------CATT-TC-AA-ACACAGC----ATACATGTATT-TA-C-TGTTAAAAGATAA---AATTATT-TCCA-TGAAAGTTCT---GAGCTG-C-CC-CTTTAA--GTTTTAA--GAAT--GGTT-GATC-ATTGCAAC--c
gi|11 : TAATTAATGTGATGGAAACAACACG--A-CATTT-------CTTCACATATT-CCGTTCCTCTATT---T---AC--TG------AATGCATA------ATAAAT--ACT-AG-TAT--GAAAGGACAA---CATTATT-TCCA-TGAATGTTCT---
gi|12 : aa-TTTGAGTTTCATA-GAAAAGTCA-GAATTTCTT--TATTTTATCTTTCCTAG-ATAAGAAAACTATGTCAAA---TA-TACACTATGATCATCTTTATTTTATTTTA---TTCTTGCAT
gi|13 : AA-CGTTGTA-GAAAATTCCG--TTGAGAGAGACAATTGT-----TA---AAA---T----GT----A-GCATTT----------AGAAGCAATT----------ACTGTCGGGTGAAAAGAA-TATTGTTGA---GATCGCTTTTG
gi|14 : AAGAGAGACA---AT-----TG---T-----T----GA----A-GATG-T----------AG------T-----------ACT-TAG----AAACAAT-TGCTGTCGAAAAGATTGCTTTTGCCACAC--A-----CA-GAAt
gi|15 : --TAGG-AAT-ATCACCAAT----AATCTAA-TTG--CAT-ATC---TTCCT-AAAAGATAT-AAATGTTACACTCAAA-C
gi|16 : tA-TACTATTGA---GATTGCTTTGACTACAA--AGTTAACG-GAAC-ATGCCTA-GATTTCAACATTTCATGTTTtca
gi|2 : AAAGTGTTGGAA-TTCTGAATTAGTTACAATATG--GGA--CCTGTAAATACGGGTATGTAACTGCAGTATATATATAGTGAACAGACAA-CATATAAATG-TAGCCGTAAA--CAACATAATGAATACTCAT-CGAACGATGAAATAATTCAT-GTCT-TTCTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATA--A-----AGAAAAGTGTA-AAGTTAGTGGG-TG-TGCATATCTTT-------AAAATGATGGAAATGAAAACCAT-TT--TATTTTTT--ATTTCC----TTAAGTAAAATGATTGCAACTCAGTGTGTGAG--ATGTACCGTAGAATTTGCCAATAAATC-CGAAAGCGTGTGGG-AAGTAAGATAACTTGA----TAAATATATATCAA-CG-TTTGAACTTGATA-GAAAATACA-TGAGTTCTT--TATTTCATCTGTCCTTTTATAAGCAAACTATGACAAAAGATA-TA----ACAACCCTCTTTATTTT-TTTAA---TCCTTGCATTGCG-TGTCCTTATGACACACTTTGTAAT-AAACTTTCATTGATCAAT-TGATGGGAAGAACAAA--T-GATTT-------CTTCACATTTT-CCGTTCCCTTACTGAATAC-AC--GATT-TC-AA-ATAAA------ATA-----ATT-TG-------GAAAGATAA---CA-TACTGTTCA-TGAATGTTCT---GAGTTG-C-AC-GTGTAA--GTTATAA--GCAT--CATT-GATC-ATTGCAAC--AAGG-AAT-ACCACTAAT----ACTGTAA-TTA--CAT-TTC---TTCATAAATAGATAT-GAATTGTACGCTCAAA-GGTTGTA-TAAACCTCTG--TTAAGAGAAACA--TA------CA---T-----T----GT----A-G----T------------------TT----------GCTATAG----AAGAGAATTAC-----A---AA-------TGCCACAC--A-----CG-TAGC-ATACCAA-TATTTCAACATTTCATGTTTCAA-TTTATTTC-A-CA-TTTCTTTTAAA--------------------CTTTCGACA-----AAC---AAAC-CTC-TTCC-GCCTAACAGTGTTCTCAAC--ACTTTG--ATTAAAATTG-ATGTCATGATT
gi|3 : taaccaatcaaataccgacatcttagttaattaagaaataattataagacaataacagacgaatttgaatggtataaaAAAGTGTTGGAAGTTCTGAATTAGTT-CAATATGCTGGA--CCTGTAAATACGGG-ATGTAACTGCAGTATATATATA-TGAACAGACAAACA-ATAAATGGTAGCCGTAAAATCAACATAATGAATACTCATACGAACGATGAAATAATTCAT-GTCT-TTCTTATCCTAAAAAGATT--CTTA-AAATATTTA-AAAGAAA-GTATATAA------GAAAAGTGTACAAGTTAGTGGGCTG-TGCATAT-TTT-------AAAATGATTGAAATGAAAACCAT-CT--T-TTTTTTTGATTTCC----TTACGTAAAATGATTGCAACTTCGTGTGTGAGAAATGTACCGTAGAATTTGCCAATAAAATCCGAAAGCGT-TGGGAAAGTAAGATAACTTGAA--T-AAATATATATCAA-CGTTTTGAACTTGATAGGAAAATACATTGAGTTCTTTATATTTCATCTGTCCTTTTATAAGCAAACTATGACAAAAGATATTA----ACAACCCTCTTTATT---TTTTAGATTCCTTGCA-TGCG-TGTCCTTATGAAACACTTTGTAAT-AAACTTTCATTGATCAAT-TAGTGGGAAGAACAAATGA-TGTTC-------TTTCACATTTTCCCGTTCCCTTACTGAATTACAC--GATT-TC-AATATAAA------ATA-----ATT-GG---------AAGATAA---CA-TACT-TTCA-TGAATGTtcattaggttt
gi|4 : AAAGTTCT---GAGCTG-C-AC-GTGTAA--GTTATAA--GTAT--GGTT-GATC-ATTGCAAC--TAGG-AAT-ATCACTAATTAATACTTTCA-TTA--CAT-TTC---TTCCTAAAACGATAT-AAATTTTACATTCAAA-CTTTGTA-GAAACTTCTG--TGAAGAGAGACAGTTATAAAGGTA---T-----TAGAAGTTTGAA-G----C----------AG------TT----------GTTGTCG----AAGAGAA-TACTGTTGA---GATTGATTTTGCCACACGTA-----C--GATC-ATACCAA-GATTTCAACATTTCATGTTTCAA-TTTATTTTAA-CATTTTTTTTTAAATGTGTCAATTTATTTAACATTTTTTGAAATTTTCGAC---AAACATTTGTTCT-GC---AC--CATTCTCAAT--ACTTTG--ATT-AAATAGCATGTCTTGA
gi|5 : ttt---GAGTTG-CCAC-GTGTAA--GTTATAA--GCATCCATCT-GATCCATTGCAAC--AAGG-AATTACCACTAAT----ACTGTAA-TTATACAT-TTCC--TTCATAAATAGATAT-GAATTGTACGCTCAAA-GGTTGTATAAAACCTCTGGTTAAAGCGAACCA--CAT-----CA---T-----T----GTC---A-G----T----------A-------TT----------GCTATAG----AAGAGAATTAC-----A---AA-TG-------CACAC--A-----CGTTAGCAATACCAATTATTTCAACATTC--TGTTTCAATTTTATTTC-ACCATTTTCTTTTAAA--------------------CTTTCGACA-----AACACAAAAC-CTC-TTCCGGCCTAACAGTGTTCTCCATACACTTTGGTATTAAAATT--ATGTCATGATTat
gi|6 : tcTATAG--AAAT--GGCT-CATT-AGAGCAAT--TAGG-AAT-ATCACTTAC----ATTTTGACTTA--TAT-TTCCTTTTCTTAAAAAGATA---ATTTTTACACTCAAAACGTTCTA-GAAACACCTG--CCAAGCGAGACAATTAT-----TAAT-TAAAGGT----GT----ACA----T----------AG------TTAGAAGCAGATGTTGTCG----AATAGAA-TAGTGTTGA---G-TTGCTTTGCCCACAC--A-----CA-GAAC-ATACCAA-GATTTCAACGTTTCATTTTTAAA-TTCATTTC-A-C-TTTTT------G--------------------TTTTCGACA-----AAC---CAACATGC-TTCC-GCCTAACTCTATTCTCAGT--ACTTTG--AT
gi|7 : TGATACAGTATTGAGCGAACCTTTTAT-AATTAAT-TGAATGAAAGAACAAA--ATTATTTGAAATAGCTTTATATTTC-CCGTTTCCTT-TT-AA----ACTTTATTATCAAA-ACACAGTCAGTATA-----AGT-TG---T--TAAAAGATAAG--CATTATT-TCCATTGAAAGTTTCATAGAGTTGTC-ACGGTGTAAAGGTTATTATCGCAT--GGTTGGATC-ATTGCAACATTAGGAAAT-ATCAC-AAT----ACTTTAA-TCA--CATATTC---TTC
gi|8 : CAACCCTCTTTATTTCAGTT-A---TCCTTACATTGGGGTGTCCTTCTG-------GTCTAGG-AATCTTTCATTAATTAAT-TGATGGAAAGAACAAA--A-CATTT-------CTTCACATTTC-CCGTTCCTTTATT-----------TATT-TC-AA-ACAGA------GTAT----ATT-CGTT-T--TAAAATAAAA---CATTACT-TCCA-TAAAAGtcct
gi|9 : GCATATCTTT-------AAAG-GATGGAAATGAAAGCCAAACTGAT-TTTTAT--GTTTCCGTAATTAAGTAAAATAAATGCAATTTATTGTACGAA--ATGTACCGCAGAATTTGTCAATAAAGT-AGAAGG-GGGTATG-AATTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCATGCACTTTAGTTTCGACTTAGGTACGCCACTGATCT