lowQualScore : 1 11 22 5555555555555555555555555555 11 1111111111 222222222 111111111 1111 444444444444 6666666 11 111111 22222222222222 2222222222 1111 4444444444 3333333333333 33333333333 111111111 1111 1111111 11111111111111 11111111111111111 4444444444444444444444444444444444444444444 2222222222222 1 111
lowQualScore : 5 3 2 2 00 5 88888 11 2 2 999 2 0000000000000000000000000000 222 00 66 7777777777 2 333333333 66666 2 2 555555555 2 2 2 2 5 2 2 5 2 2 2 33 8888 2 2 55 66 2 444 2 2 33 2 666666666666 444 2 5 33 2 444 5555555 33 333 11 999999 2 5555 99999999999999 77 4444444444 666 4 2222 888 2222222222 33 2 5 33 6666666666666 3 666666 44 3 3 55555555555 666666666 3 3 1 88888 2222 1111111 44 22222222222222 55555555555555555 0000000000000000000000000000000000000000000 2 2 7777777 0000000000000 2 2 2 5 66 2 4 333 88888 2 4 333 2 2 33 5 2 2 444 555
lowQualScore : . . . . .. . ..... .. . . ... . ............................ ... .. .. .......... . ......... ..... . . ......... . . . . . . . . . . . .. .... . . .. .. . ... . . .. . ............ ... . . .. . ... ....... .. ... .. ...... . .... .............. .. .......... ... . .... ... .......... .. . . .. ............. . ...... .. . . ........... ......... . . . ..... .... ....... .. .............. ................. ........................................... . . ....... ............. . . . . .. . . ... ..... . . ... . . .. . . . ... ...
lowQualScore : 0 3 8 5 99 0 55555 11 5 5 555 4 8888888888888888888888888888 777 33 66 2222222222 5 444444444 77777 7 7 444444444 7 7 7 7 0 7 7 3 5 4 5 44 8888 4 4 66 88 9 111 4 4 22 4 444444444444 444 5 0 22 4 111 1111111 11 999 77 666666 4 3333 77777777777777 99 6666666666 000 6 2222 555 2222222222 99 9 7 99 2222222222222 1 666666 22 1 1 33333333333 777777777 3 3 8 33333 1111 0000000 22 11111111111111 33333333333333333 9999999999999999999999999999999999999999999 9 7 0000000 0000000000000 5 4 4 0 88 0 0 777 22222 1 2 999 2 2 44 7 9 9 555 444
consensus : AGGGCTGG-GTACGGTA-AGCATA--GCACA-TC----GGCCC-T-GTCCGCAC-GTN--A-AAN-AT--T---A-AAGTT---A--TGTTTTAT-C-T--TA-TATT--T-T-----ATT-GGTC---C----A-----A-A-AANA--T--T-GT-TCAA-GA-CC-TCC-T-GTG-TAT-GGAAATNAC-TTTT--GTT---TCG-G-AAAA--TGCAC-GTGCG---TC-T-TGTA--A-AT-ATA-A-G----T---C-CG-AAACCGGAG--CAAT-AA---TCCG-G--ATT--TT---CAT-AAA---A--TTTACTG-TT----T-------------TTGACATA--ATTTTGACAT--A-AAAATGTTAAAAA--TGAACT---TGGCCACA--CCT-----TTGTAT--TA-AA-TT--TTAC-TNGT--G--TT-ATTTT----G-A--AT-CTA-CACTA------AAA-GAT---------G-A-TAT-----ATTCA--TGAAA-----G-T--TT--G-GTA------TACATA---CGT--G-------GTTGT--G---CCATAGAG---A------AA-----NA--TT----TAT-TG-A-----AA--C--GTA----NCAA-AAA-C-AGTAAA--T-TTTA-TG---AA-----AA-T-C---CG-GATT-ATTG--CTCCGGTTT-CG-G-A--CTCTA---TATTTACA
Reference ( gi|5 ) : AGGGCTTG-GTATGGTA-AGCATA--GCACA-TT----GGCCA-T-GTCCGCAC-GTC--A-AAT-AT--T---A-AAGTT---T--TGTTTTAT-C-T--TA-CATT--C-T-----ATT-GGTC---C----A-----A-A-AATA--T--T-GT-TCAA-GA-CC-TTC-T-GTG-TAT-GGAAATTAC-TTTT--GTG---TCG-G-AAAA--TGCAT-GTGCG---TC-T-TGTA--A-AT-A---A-G----T---C-CG-AAACCGGAG--CAAT-AA---T----A--ATT--TT---CAT-CAA---T--TTTACTG-TT----T-------------GTGACATA--ATTTTGACAT--A-AAAATGTTAAAAA--TAAACT---TGGCCACA--CAA-----TTGTAT--TA-AA-TT--TCAC-TAAC--T--TT-ATTTT----G-A--AT-CTA-CACTG------GAC-GAT---------G-A-TAT-----ATTGA--TGAAA-----A-T--TT--G-ATA------TACATA---GGT--G-------GTT-T--G---CCATAGAG---A------AA-----TA--TC----TGT-TG-A-----AA--C--GTA----TCAA-AAA-C-AGTCAA--T-TTTA-TG---AA-----AA-T-C---CG-GATT-ATTG--CTCCGGTTT-CG-G-A--TTCTA---TATTTACA
gi|6 : AGAGCTGG-GTGCGGTA-AGCAGA--GCACA-TC----GGCCC-T-GTCCGCAC-ATC--A-AAA-AA--T---A-AAGTG---A--TGTT--AT-T-T--TA-TATT--T-T-----ATT-GGTC--------A-----A-A-AACAAGT--T--T-TCAA-GA-CC-TCC-T-GTG-TAT-AAAAATGAC-TTTT--GTT---TCG-G-AATA--TGCAC-GTGTG---CC-T-CATA--G-ATAA---A-G----T---C-CG-AAACCGAAG--CAAT-AA---TCCG-G--GTT--TT---CAT-AAA---A--TTTACTA-TT----T-------------TTGGCACA--AGTTTGACATCAA-AAAATGTTTAAAA--TGAAAT---AGGCCACA--TCT-----TTGGAT--TA-CA-TT--TTAC-TTGT--G--TT-ATTTC----G-A--AT-CTA-CACTG------AAA-GATG--------G-A-TAT-----ACTCA--TGAAA-----G-T--TT--G-ATA------TACATA---TAT--G-------GTTGTG-G---CCGTAGAG---A------AA-----AT--TT----TAT-TG-A-----AA--C--GTA----GC-A-AAA-C-AGTAAA--T-GCTA-TG---AATTATCAA-T-C---AG-AATT-
gi|4 : AGGGCTGG-GCATGGTA-AGCAGA--GCATA-TC----AGCCT-T-GTCCGCAC-TTT--T-ATT-TT--C---ATAAATT---TACTGTTTTtcatt
gi|2 : aaGGGCTGGCGTACGG-A-AGCATA--GCACA-TC----G-CCG-TTGTCTGCAC-GTCCAA-AAT-AT--T---A-AAGTT---A--CGT---AT-C-C--TA-TATT--T-T-----GTA-GGT---------A-----A-A-AAAA--T----GC-CCAAAGA-CC-TCCCT-GTG-TATTGGAAATCCC-CCCC--CCC---CCC-G-GAAA--TGCAC-GTGTG---TC-T--GTA--A-AT-A---AAG----TAGAC-CG-AAACCGGAGAGCAA--AA---TCCG-G--ATT--TTTTTCAT-AAA---A--TTTGCTG-CT----TTTTGAACAGTACTGTGACATA--ATTTT-------------TTTTTAAAA--TGAACT---TGGACACA--CCT-----TTGTAT--TC-AA-TT--ATAC-TTGT--T--TT-ATTTT----G-AATAT-CTT-CTCTG------AAA-GAT---------G-A-TAT-----ATTCA--TGAAA-----G-T--TT--G-GTA------TAC-CA----GT--G-------CTT-G--G---CCAAAGAG---A------AA-----TC--TT----TTT-TG-A-----AA--CG-GTAGG--CAAA-AAA-C-AGTAAAT-T-TTTATTG---AA-----AA-T-C---AGCGATT-ATTA--TTCCGATTT-TGAG-A--CTCTA---tgacataattttcacatagaaaatgtcaaaaatgaacatggacacacctttgtattaacttttacttaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaatttatttaaatttaacaaaaacattaaatttcatgaaaatactggattactgctccgtttttggactctctatttataagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|8 : GCTGG-ATACGGTA-AGCATA--GCACctggtgcagagacaaagatgttctatggaaca
gi|3 : aaataCTGG-GTGCAGTA-AGCATAA-GCACA-TT----GGCCC-T-GT---------------------------------------TATGTTAT-C-T--TA-TATT------------T-GGTA--------A-----A-A-AATG--T--TTGT-TCAG-AA-CC-TCT-T-GTG-TAT-GGAAATGAC-ATTT--GTT---TCA-G-AAAA--TGCACCATATG---TC-T-TA-A--A-AT-ATAGA-G----T---C-CG-AAACCGGAG--CAAT-AT---C----C--GGT--TT---CCT-TAA---AAATTTACTG-TT----C--------------TGACATA--ATTTTGACAT--A-AAAATGTTAAAAAA-TGAACT---TGGCCACA--CCT-----TTGTAT--TA-AA-TT--T-AC-TGGT--G--TT-AATTT----G-A--AT-GTA-CACTATTAAAAAAT-GAT---------T-A-T-T-----ATTAA--TGAAA-----G-T--TT--------------ACAT---------G-------GTT-TTGG---CCATAGAT---A------AAACTTTTAAGTT----TAT-TG-A-----AA--C--ATA----TCAA-AAA-C-AGTAAA--T-TTTA-GG---AA-----AA-T-C---CG-GATT-ACTG--CTCTGGCTtgtttgtttgtttttttctttttacataattttgacattaaaatgttaaaaaagatctttgtattaaactttttttggtgttattttgaatgtacattaagagatgatgtattcataaaagtttggtatacgtacatgattgtggtcatagagaaaactttactgaaatgtagctaaaacggtaaatttgatgaaaatccggattactgctc
gi|1 : G-GTACGGTA-AGCATATAGCACA-TC----TGCCC-T-GTCTGCAT-GTC--A-AAA-AT--TACCA-AAG-T---T--TG--TTAT-G-T--TA-TATT--T-C-----ATT-GGTC---CAGAAA-----A-A-AAAA--T--G-AT-TCAA-GA-CC-TCC-TGGTG-TAT-GGAAACGAC-TCTT--ATATTTTCG-G-AAAAT-TGTAC-GTGTG---TC-T-TGTA--A-A-------------T---C-C---ACCCG-----------------------ATT--TT---CAT-AAA---A--TTTACTG-T------------------------------TTTTGACAT--A-AAA----TAAAAT--TGAACT---TGGCCACA--AAACACCTTTGTAT--TA-AA-TTACTTGC-GAA---------ATTTT----G-A--AT-CTA-CACTA------AACAGAT---------G-A-TAT-----ATCTA--TGAAA-----AGT--TT--G-GTT------TACATACATGAT--T-------GTT-A--G---CCATTTAG---A------AAACT--TA--TCTAAATGT-CG-C-----AA--T--GTT----TCAatttacaagacgcacaaggcattttcaaaaaacaaaagtaatttcaaaacactaaggtcttgaacga
gi|4 : cgG-GTGCGGTA-AGCATA--GTACA-TC----GGCCC-T-GTCCGAAT-GTT--A-AAT-ATAAT---A-AAATT---G--AGCT--AT-G-T--TA-TGTT--T-T-----ATT-AGTC---G----A-----G-ATGATG--T----GT-TCAA-GA-CC-TCT-T-GTG-TAT-GAAAATGAC-TTCT--GTT---TCG-G-AAAT--TGCAC-GTGCG---TC-T-TATA--A-AT-AGAGA-G----T---C-CA-AAAACGGAG--CAGT-AA---TCC--AGTATT--TT---CAT-GAA---A--TTTAATG-TT----T-------------TTGTTA-A--ATTT--AAAT--A-AAgtacttcgttaatagttttataagacgcacgtgcagttttcccaaaacaaaagtcatttcaacaccaagaggtctgacacaaaattcattggccaataaaacattaagataaaccacaattatattctaacggttcggacgggccgattaatatatatgcttaccgtac
gi|17 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcacttttattttcataaatttactgtttttgacataattttcacatagaaaatgtcaaaaatgaacatggacacacctttgtattaacttttacttaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaaG-GTATGGTA-AGCATA--GCACA-TC----GGCTC-T-GTCCGCAC-ATC--A-AAA-AT--G---A-AAGTT------------AT-T-T--CA-TATT--T-T-----ATT-GGTC--------A-----A-A-AA-A--T--T-GT-TCAA-GA-CC-TCC-T-GTG-TAT-GGAAATTAC-TTTT--GTT---TCG-GAAAAA--TGCAca
gi|11 : gG-GTACGGTAGAGCACCT-GCACAATC----GGCCCCT-GTCCACAC-GTA--A-AAC-AT----------------------------C-T--T--CACTAGT-T-----ATT-GGTT---C----A-----A-A-AAAT--T--T-AT-TCAA-GAATC-TCC-T-GTGGTAC-G-AAATTAC-TTTTTGGTG---TCG-G-AAAA--TGCAG-GTG-G---TCTT-TGTA--A-AT-GT--A-GTAGTT---C-TGTAAACCGTAG--CAAT-AA---TCCGGA--ATT--TT---CAT-TAAAC-A--TTTACCA-TT----c
gi|19 : ataaaaattaagttgG-GGACGGTA-AGCATA--GTACA-TC----AGCCC-T-GTCCGCAC-GGA--A-AAA-AA--T---A-AAGTT---A--TG--TTAT-C-T--TA-TATT--T-T-----ATTAGGCA---A----A-----A-A-AATA--T--cct
gi|1 : tg-GTACGGTA-AGCATA---TATA-TTAATCGGCC--C-GTCCGAACCGTT--AGAAT-AT---------AATT---G--TGGTTTAT-C-T--TAATGTT--T-T-----ATT-GG-C---C----A-----ATG-AATT--T--T-GTGTCA--GA-CC-TCT-T-G-G-TGT-TGAAATGAC-TTTT--GTT---TTG-G-GAAAACTGCAC-GTGCG---TC-T-TATA--A-Aatcacttggatgtatg
gi|25 : cgggtacggtaagcatatagcacatctgccctgtctgcatgtcaaaaattaccaaagtttgttatgttatatttcattggtccagaaaaaaaaatgattcaagacctcctggtgtatggaaacgactcttatattttcggaaaattgtacgtgtgtcttgtaaatccacccgattttcataaaatttactgtttttgacataaaataaaattgaacttggccacaaaacacctttgtattaaattacttgcgaaattttgaatctacactaaacagatgatatatctatgaaaagtttggtttacatacatgattgttagccatttagaaaacttatctaaatgtcgcaatgtttcagtacttcgttaatagt-GTACGGTA-AGCATA--GCACA-TC----GGCTC-T-TTCCTCAC-GTA--A-GA--AA--T---A-AAGTT---A--TGTT
gi|23 : gaTACAGTA-AGCACA--GCACA-TT----GACCC-T-GTGTGCCC-GTA--A-AAGAAG--T---A-AAGTT---A--TG--TTAT-T-C--TA-TATT--T-C-----ATT-
gi|14 : TGGTA-AGCATAA-GCACA-TC----GGTCC-T-GTCCGTAT-GTCA-A-AAA-AA--T---C-AAGTC---A--TG--TTAT-C-TTATA-CATT--TGT-----ATT-GATTGGAT----A-----A-A-AAAA--T--T-GT-TC-A-GA-AT-TCC-T-GTG-TA--AGAAATT
gi|12 : tGTA-AGCACT--GCACAATC----GGCCCCT-GTCCACAC-GTA--A-AAC-AT--C--------------------TTAT-AGT--TA--ATT--A-T-----GT--GGTT---C----A-----A-A-AAAT--T--T-AT-TCAA-GA-TCATCC-T-GTGGTAC-GGAAATTACTTTTT--GT----TCG-G-AAAA--TGCAC-G-GTGGAATC-T-TGTA--A-AT-GT--A-GTAGTT---C-TGTAAACCGTAG--CAATGAA---TCCGGA--GTTCGTT---CAT-AAC---A--TTTACgttgtaactagaacctacatatcatatgcgtatatgttaat
gi|15 : ggtgacgat-AGCATA--GCACA-TC----GGTCC-T-GTCCGTAT-GTC--A-AAA-AT--C---A-AAGTC---A--TG--TTAT-C-TTATA-CATT--G-TATTTGATT-GGTA---A----A-----A-A-AA-A--T--T-GT-TCAA-GA-CT-TCC-T-GTG-TAT-AGAAATTGT-TTa
gi|10 : CACA-TC----GGCCC-T-GTTTGCAC-GTA--A-AA--A-------A-AACTTACGT--TATCTTATAC-A--TG-TATT--T-C-----ATT-GGTC---G----A-----A-A-AAAA--AAAT-GC-GCAA-GA-TC-TCT-T-GTG-TAT-GGaactagacctaacataaatcatatgcggtacatgtaaattat
gi|7 : --A-AAT-A-------A-AAGTT---A--TGTT--AT-C-T--TG-TATT--T-T-----ATT-GATC---T----A-----A-A-T-TA--T--TTGT-TTAA-GA-CC-TCC-T-GTG-TAT-AGATATTAC-TTTT--GTT---TCA-G-AAAA--TGCAT-GTTAG---TC-T-TGTA--A-AT-ATAGA-G----T---C-CG-AAACTGGAG--CAGT-AA---TCTG-A--ATT--TT---CAT-AAA---A--TTTACTG-GT----T--------------TAGC-TAC-ATTTCAAT------AAAGTTTT-----------CTCTGTGGCCACAACCA-------TGTA---TG-CA-TA--CCA---AAC--T--TTCA---T----G-A--AT-ATA-TAAT------------AT---------C-A-TGT-----TTTAG--TGTAG-----A-T--TCAGA-ATA-------ACACA---AGTAAG-------ATT-T--A---ATACAAAG---G-----------------------TGT-GG-T-----CA--G--GT-----TCAGTAAA-A-AG--------TTTG--G---AA-----AA-T-C---CG-GCTT-ATTG--CTCCAGTTT-TG-G-A--Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaattactttcgtttcggaaaatgcacgtgcgtcttgtaatatagatttccgaaaccggagaaataatccggattttcataaattt
gi|13 : gttttggaaactgcatgtgcTTTAT-C-TGTTA-CTTT--C-G-----AG--GGTT---C----ACCTTGA-A-AAT---T--T-GT-TCAA-GA-CC-TCC-T-GTA-TAT-GGAAATGAA-TTTT--GTT---TCG-G-AAAA--TACAT-GTGTG---TC-T-TATA--A-AT-ATAGA-G----T---C-CG-TAACTGGAA--CAAT-AA---TCCG-G--ATT--TT---CATAAAA---T--TTTAttttaagtgcaagtttcaacga
gi|3 : --T--C-GT-TCAA-GA-CC-TTA---GTG-TTT-TGAAATTAC-TTTT--GTT---TTTTG-AAAA--TGCCTTGTGCG---TC-T-TGTA--A-AT----------------------AGCCAGAG--CAGT-AA---TCCG-G--ATT--TT---CCT-AAA---A--TTTACTG-TT----T-------------TTGATATG----TTTCA-AT--A-AA---CTTAAAAGTTTTATCTA--TGGCCAAAACCA-------TGTA----A-AC-TT--TCAT-TAATAATAATC-ATTTTTTAAT-A--GT-GTA-CATTC------AA---AT---------T-A--AC-----ACCAG--T--AA-----A-T--TT--A---A------TACAAA---GGT--G---------T-G--G---CCA---AGTTCATTTTTTAA-----CA--TTTTTATGT-CA-A-----AAT-T--ATG----TC-A-GAA-C-AGTAAAT-T-TTTA-AG---GA-----AA---C---CG-GA-T-ATTG--CTCCGGTTT-CG-G-A--CTCTA---TATTTctttgctgatggcgagggcattcgtggcataccgacttcctgtaa
gi|10 : ctgggtgcagtaagcataagcacattggccctgttatgttatcttatatttggtaaaaaatgtttgttcagaacctcttgtgtatggaaatgacatttgtttcagaaaatgcaccatatgtcttaAT-GGAAATTAC-TTTC--GTT---TCG-G-AAAA--TGCAC-GTGCG---TC-T-TGTA--ATAT-A---G-ATT--T---C-CG-AAACCGGAG--AAAT-AA---TCCG-G--ATT--TT---CAT-AAA---T--TT
gi|21 : cacatcggccctgtttgcacgtaaaaaaaacttacgttatcttatacatgtatttcattggtcgaaaaaaaaaatgcgcaagatctcttgtgtatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATGAC-TTTT--GTT---TCC-G-AAAA--TGCAC-GTGTG---TC-T-TATA--A-AT-ATAGA-G----C---C-CG-AAACCGGAG--CAGT-AA---TCAG-G--ATA--TT---CGT-AAA---A--CTTGCTG-TT----T-------------
gi|18 : AC-TTTT--GTT---TCG-G-AAAA--TGCAC-ATGCA---TT-T-TGTA--A-AT-ATACA-G----T---T-CG-AAAACGGAG--CAAT-AA---TCCG-G--ATT--TT---CAT-GAA---A--TCTACTGTTT----T-------------GCTACATtt
gi|7 : aaaaaactttattgaa--GTT---TTG-G-AAAC--TGCAT-GTGCA---TC-------------------------------CA-AAACTGGAG--CAAT-AAGCCG----G--ATT--TT---C---CAAACTT--TTTACTG-ca
gi|16 : G-G-AAAA--TGCAC-ACGTG---TC-A-TGTA--G-AT-AT--A-G----T---C-CG-AAACCGGAA--CAAT-AA---TCCA-A--ATT--TT---CAA-AAC---T--TTTACTG-TT----T-------------TTGACATA--G-----------A-AATATGTTAAAAA--TGAATT---TGGCCACA--CTT-----TTGTAT--TACAA-TT--Taacctgaccacacctttgtattaaatcttacttgtgttattctgaatctacactaaaacatgatattatatattcatgaaagtttggtatgcatacatggttgtggccacagagaaaactttattgaaatgtagctaaaccagtaaattttatgaaaattcagattactgctccagtttcggactctatatttacaagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|2 : atttaCAT-CTTTG---TC-TCTGCACCA-GT-AG--A-G----T---CTCA-AAATCGGAA--TAAT-AA---TCGCTG--ATT--TT---CAA-TAA---AAATTTACTG-TT----T-------------TTTGCCTACCGTTT---CA---A-AAAAGATT-------TCTCTT---TGGCCAAG--CAC-----TGGTATACCA-AACTT--TCAT-GAA-------T-ATATC---------AT-CTTTCA---------GA--GAA---------G-A-TAT------TCAAAATAAAACAAGTA-TAATT--G-A-A------TACAAA---GGT--GTGTCCAAGTT-C--A---TTTTAAAA---A------AA-----AA--TTA---TGT-C---------A--CA-GTACTGTTCAA-AAAGC-AGCAAA--T-TTTA-TGAAAAA-----AA-T-C---CG-GATT--TTGCTCTCCGGTTT-CG-G-----TCTACTTTATTTACAac
gi|8 : gggctggcgtacggaagcatagcacatcgccgttgtctgcacgtccaaaatattaaagttacgtatcctatattttgtaggtaaaaaaatgcccaaagacctccctgtgtattggaaatcccccccccccccggaaatgcacgtgtgtcGAG--CAGT-AA---TCCG-G--ATT--TT---CAT-CAA---A--TTTACCG-TT----T-------------ttctatggaaca
gi|4 : aaatagctggatacggtaagcatagcactgtttgtttgtttttttctttttacataattttgacattaaaatgttaaaaaagatctttgtattaaactttttttggtgttattttgaatgtacattaagagatgatgtattcataaaagtttggtatacgtacatgattgtggtcatagagaaaactttactgaaatgtagcta--ATT--TT---CAT-AAA---T--TT-ACTG-TT----T-------------TTGACATA--ATTTTCACAT--AGAAAATGTCAAAAA--TGAACA---TGGACACA--CCT-----TTGTAT--TA-AC-TT--TTACTTAA---------AGTTT----G-A--AT-GTA-CACTA------AAG-GAT---------G-ATTAT-----ATCTA--TGAAA-----G-T--TT--G-GTA------CACATA---AAT--G-------GTTGT--GA--CCATATAG---A------AA-----AA--TT----TAT-TT-A-----AA--T--TTA----ACAA-AAA-C-ATTAAA--T-TTCA-TG---AA-----AA-TAC---TG-GATT-ACTG--CTCCGTTTT-TG-G-A--CTCTC---TATTTATA
gi|9 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcactttt-CAA---T--TCTATTA-TTAATTT-------------GTGACATA--ATT-----A---A-AAAA----AAAAA--TGAACT---TCGCAACC--T-------TTGTAT--CA-AA-TT--TTAC-TTGT--G--TT-ATTTT----GAA--ATGCT---ACCA------AAA-GTT---------GAA-TTT-----ATTTC--TAAAA-----G-T--TG--GTATATCATCGTACATA---CAT--G-------ATTGTG-G---CCATAGCG---C------AA------A--TT----TAT-TGAA-----AA--CA-GTAG---GCAA-AAA-CTAGTAAAATT-TTTA-Tagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|8 : aactggggctggtcatgtcagccgggc---T--TTTTCTT-TT----T----------------ACATA--ATTTTGACAT--T-AAAATGTTAAAAA---AGATC---T-----------------TTGTAT--TA-AACTT--TTTT-TGGT--G--TT-ATTTT----G-A--AT-GTA-CATTA------AGA-GAT---------G-A-TGT-----ATTCA--TAAAA-----G-T--TT--G-GTA------TACGTA---CAT--G-------ATTGT--GG--TCATAGAG---A------AA-----AC--TT----TAC-TG-A-----AA--T--GTA----GCTA-AAA-C-GGTAAA--T-TTGA-TG---AA-----AA-T-C---CG-GATT-ACTG--CTC
gi|7 : aaatagctggatacggtaagcatagcactgtttgtttgtt--TGAACC---TGACCACA--CCT-----TTGTAT--TA-AA-TC--TTAC-TTGT--G--TT-ATTCT----G-A--AT-CTA-CACTA------AAA-CAT---------G-A-TATTATATATTCA--TGAAA-----G-T--TT--G-GTA------TGCATA---CAT--G-------GTTGT--GG--CCACAGAG---A------AA-----AC--TT----TAT-TG-A-----AA--T--GTA----GCTA-AAC-C-AGTAAA--T-TTTA-TG---AA-----AA-T-T---CA-GATT-ACTG--CTCCAGTTT-CG-G-A--CTCTA---TATTTACA
gi|24 : gttttggaaactgcatgtgcatccaaaactggagcaataagccggattttccaaactttttacAACA---TGGCCACA--ACT-----TTGTAT--TA-AA-AT--TGTC-TTGT--G--TT-ATTTT----A-A--AC-CTA-CACTagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|20 : aaagT--TA-AA-TT--TTAT-TTGT--G--TT-ATTTT----G-A--AT-CTA-CTCTG------AAA-GATAATTATATAG-A-TCT-----ATTCA--TGAAA-----G-T--TC--G-GTA------TACATA---CAC--G-------GTTGTG-G---CCATAGAG---A------aaaa
gi|1 : A-----A-T--TT--A-ATA--------CAAA---GGT--G-------TTT-T--GTGGCCA-AGTT---C------AA-----T---TT----TAT-TT-T-----A-------TG----TCAA-AAA-C-AGTAAA--T-TTTA-TG---AA-----AA-T-CGGGTG-GATT-
gi|6 : cgggtacggtaagcatatagcacatctgccctgtctgcatgtcaaaaattaccaaagtttgttatgttatatttcattggtccagaaaaaaaaatgattcaagacctcctggtgtatggaaacgactcttatattttcggaaaattgtacgtgtgtcttgta---A------AA-----CA--TT----TTT-TG-ATGTCAAA--CTTGTG----CCAA-AAA-T-AGTAAA--T-TTTA-TG---AA-----AA-C-C---CG-GATT-ATTG--CTTCGGTTT-CG-G-A--CTTTA---acttgcgaaattttgaatctacactaaacagatgatatatctatgaaaagtttggtttacatacatgattgttagccatttagaaaacttatctaaatgtcgcaatgtttcagtacttcgttaatagttttataagacgcacgtgcagttttcccaaaacaaaagtcatttcaacaccaagaggtctgacacaaaattcattggccaataaaacattaagataaaccacaattatattctaacggttcggacgggccgattaatatatatgcttaccgtac
gi|4 : agagctgggtgcggtaagcagagcacatcggccctgtccgcacatcaaaaaataaagtgatgttattttatattttattggtcaaaaacaagttttcaagacctcctgtgtataaaaatgacttttgtttcggaatatgcacgtgtgcctcatag--TC----TATGTG-A-----AAATT--ATG----TCAA-AAA-C-AGTAAA----TTTA-TG---AA-----AA-T-aaaatgaaataggccacatctttggattacattttacttgtgttatttcgaatctacactgaaagatggatatactcatgaaagtttgatatacatatatggttgtggccgtagagaaaattttattgaaacgtagcaaaacagtaaatgctatgaattatcaatcagaatttcatt
gi|18 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcactttt--TT----TAT-TG-A-----AA--T--GTA----GCAA-AA--C-AGTAGA--T-TTCA-TG---AA-----AA-T-C---CG-GATT-ATTG--CTCCGTTTT-CG-A-A--CTGTA---TATTTACAaaatgtcaaaaatgaacatggacacacctttgtattaacttttacttaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaatttatttaaatttaacaaaaacattaaatttcatgaaaatactggattactgctccgtttttggactctctatttataagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|16 : aaaaaacTG----TCAA-AAA-C-AGTAAA--A-GTTT-TG---AA-----AA-T-T---TG-GATT-ATTG--TTCCGGTTT-CG-G-A----CTA---TATCTACAaaatgcatgtgcattttccgaaacaaaagtca
gi|21 : atttaggaaaatgcacacgtgtcaAA-AAA-C-AGCAAG--T-TTTA-CG---AA-----TA-T-C---CT-GATT-ACTG--CTCCGGTTT-CG-G-G--CTCTA---TATTTATAtagaaatatgttaaaaatgaatttggccacacttttgtattacaatttac
gi|11 : aatgacttttgtttccgaaaatgcacgtgtgtctAA-T-GGTAAA--TGTTTAATG---AA-----AA-TTC---CG-GATT-ATTG--CTACGGTTTACA-G-AACTACTA---CATTTACA
gi|12 : ataaaaattaagttgggtacggtagagcacctgcacaatcggcccctgtccacacgtaaaacatcttcactagttattggttcaaaaaatttattcaagaatctcctgtggtacgaaattactttttggtgtcggaaaatgcaggtggtcttGTAAA--T-GTTA-TG---AACG---AACT-C---CG-GATTCATTG--CTACGGTTTACA-G-AACTACTA---CATTTACAcct
gi|13 : ggtgacgatgtaagcactgcacaatcggcccctgtccacacgtaaaacatcttatagttaattatgtggttcaaaaaatttattcaagatcatcctgtggtacggaaattactttttgttcggaaaatgcacggtggaatctAA--T-TTTA-TG---AA-----AA-T-C---CG-GATT-ATTG--TTCCAGTTA-CG-G-A--CTCTA---TATTTATAa
gi|10 : taaAA--A-TTTA-TG---AA-----AA-T-C---CG-GATT-ATTT--CTCCGGTTT-CG-GAA--ATCTA---TA-TTACAagacacacatgtattttccgaaacaaaattcatttccatatacaggaggtcttgaacaaattttcaaggtgaaccctcgaaagtaacagataaactttgctgatggcgagggcattcgtggcataccgacttcctgtaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): AGGTGAGCAATTTATATCCTCAAGGGTTACAGATAAACTTTGCTGCTGGTGGGGCCATTTGTAGTGTACCA
Alignments
lowQualScore : 11 11111111111 2222222 22222222222 33333333333333333 111111111111111111 111111111 11111111 2222 2222222222222222222 1111 11 11111
lowQualScore : 2 2 33 2 22 33 4 4 2 7777 2 44 77777777777 2 2 1111111 333 999999 33 33 4444 2 55555555555 2 11 666 2 2 2 2 2 2 5 2 1 33 333 2 2 33 2 55 1 444 2 33 00000000000000000 4 33 2 4 2 33 444 2 6666 2 3 222222222222222222 2 1 0 77 3 77777 3 3 6666 55 1 3 9999999999 44 555 1 3 555 3 666666666 3 6 8888888 44 3 0 1 22222222 44 4 2222 555 5555555555555555555 555 6 3 5555 77 66 3 22 3 00000 4 4 6
lowQualScore : . . .. . .. .. . . . .... . .. ........... . . ....... ... ...... .. .. .... . ........... . .. ... . . . . . . . . . .. ... . . .. . .. . ... . .. ................. . .. . . . .. ... . .... . . .................. . . . .. . ..... . . .... .. . . .......... .. ... . . ... . ......... . . ....... .. . . . ........ .. . .... ... ................... ... . . .... .. .. . .. . ..... . . .
lowQualScore : 9 7 44 4 66 11 7 7 2 1111 2 00 22222222222 2 2 9999999 444 111111 22 22 9999 4 33333333333 5 66 555 5 5 5 5 5 5 0 4 0 22 999 2 2 11 2 33 9 111 4 22 55555555555555555 7 44 5 7 4 22 111 4 3333 7 6 444444444444444444 2 4 2 33 1 77777 1 1 5555 66 0 1 1111111111 22 444 5 1 444 1 777777777 3 7 7777777 66 3 4 0 11111111 55 4 1111 444 1111111111111111111 888 7 3 2222 77 88 6 33 6 00000 0 4 7
consensus : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT-N--A-AA-AAT-----TA---AA-GTTA-TGTT---TTAT-C-TTA------T--ATT--T-T--ATT-GGTC---CA-----A-AAAAAT---TGT-TCAA-GA-CC-TCC-TG-TG-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAA--TAT-----AG-AG--T---CCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-TAAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-A----AAATGTTAAAAA--TGAACT-TGGCC-----AC-ACC-TT----TGTATTAAA-TTTTACTTG-TGTTA-----T----TTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-TA-T-----ATTCA--TG-AAAGTTTGGTA--------TACATACGTGGTTGTG-G-CCATAGAG---A------A-------AAN--TT---TAT-TG-AAA--C-GTA-GC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTACTGCTCCGGTTTCG-GACTCTATATTTACA
Reference ( family-943 ) : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT-N--A-AA-NAT-----TA---AA-GTTA-TGTT---TTAT-C-TTA------T--ATT--T-T--ATT-GGTC---CA-----A-AAANAT---TGT-TCAA-GA-CC-TCC-TG-TG-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAA--TAT-----A--AG--T---CCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-TAAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-A----AAATGTTAAAAA--TGAACT-TGGCC-----AC-ACC-TT----TGTATTAAA-TTTTACTNG-TGTTA-----T----TTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-TA-T-----ATTCA--TG-AAAGTTTGGTA--------TACATACGTGGTTGT--G-CCATAGAG---A------A-------ANA--TT---TAT-TG-AAA--C-GTA-NC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTATTGCTCCGGTTTCG-GACTCTATATTTACA
gi|1 : GG-GT-ACG--GTA-AGCATATAGCAC--A-TCTGCCC-TGTCTGCAT-GT-C--A-AA-AAT-----TACCAAA-GTT--TGTT-----AT-G-TTA------T--ATT--T-C--ATT-GGTC---CAGAAA-A-AAAAAT---GAT-TCAA-GA-CC-TCC-TGGTG-TAT-GGAAACGACTCTT--ATATTTTCG-G-AAAA--TTGTAC--GTGTG---TC-TTGTAAA--T-------------------------CC------------ACCCG--A-TT--TT---CA-TAAA-A--TTTACTG-TTTTTGA-CATAA-----------A-A----------TAAAAT--TGAACT-TGGCCACAAAAC-ACC-TT----TGTATTAAA---TTACTTG-CGAAA-----T----TTTGA--A---TCTAC-AC---TAAACAGAT---------G-A-TA-T-----ATCTA--TGAAAAGTTTGGTT--------TACATACATGATTGTTAG-CCATTTAG---A------A-------A-A--CT---TAT-CT-AAA--T-GTC-GC-AA
gi|1 : c-GT-ACG--GTA-AGCATAT-ATATTAA-TCGGCCC--GTCCGAACCGT-T--AGAA-TAT-----------A-ATTG-TGGT---TTAT-C-TTAA-----T--GTT--T-T--ATT-GG-C---CA-----ATGAATTT---TGTGTCA--GA-CC-TCT-TG--G-TGT-TGAAATGACTTTT--GT---TTTG-G-GAAAACT-GCAC--GTGCG---TC-TTATAAAACTATTAACGA--AG--TA--CTG-AAACtgtttcagtacttcgttaatagttttataagacgcacgtgcagttttcccaaaacaaaagtcatttcaacaccaagaggtctgacacaaaattcattggccaataaaacattaagataaaccacaattatattctaacggttcggacgggccgattaatatatatgcttaccgtac
gi|10 : cgggtacggtaagcatatagcacatctgccctgtctgcatgtcaaaaattaccaaagtttgttatgttatatttcattggtccagaaaaaaaaatgattcaagacctcctggtgtatggaaacgactcttatattttcggaaaattgtacgtgtgtcttgtaaatccacccgattttcataaaatttactgtttttgacataaaataaaattgaacttggccacaaaacacctttgtattaaattacttgcgaaattttgaatctacactaaacagatgatatatctatgaaaagtttggtttacatacatgattgttagccatttagaaaacttatctaaatgtcgcaatCAC--A-TCGGCCC-TGTTTGCAC-GT-A--A-AA-A--------A---AA-CTTA-CG-----TTAT-C-TTATACATGT--ATT--T-C--ATT-GGTCGA-AA-----A-AAAAAA---TGC-GCAA-GA-TC-TCT-TG-TG-TAT-GG
gi|10 : AT-GGAAATTACTTTC--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGT-AA--TAT-----A--GATTT---CCG-AAACCGGAG--AAAT-AATCCGG-A-TT--TT---CA-T-AA-A--TTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaattactttcgtttcggaaaatgcacgtgcgtcttgtaatatagatttccgaaaccggagaaataatccggattttcataaattt
gi|11 : cacatcggccctgtttgcacgtaaaaaaaacttacgttatcttatacatgtatttcattggtcgaaaaaaaaaatgcgcaagatctcttgtgtatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTGG-GT-ACG--GTAGAGCACCT-GCAC--AATCGGCCCCTGTCCACAC-GT-A--A-AA-CAT------------------------------C-TT-------C--ACTAGT-T--ATT-GGTT---CA-----A-AAAATT---TAT-TCAA-GAATC-TCC-TG-TGGTAC-G-AAATTACTTTTTGGT---GTCG-G-AAAA--T-GCAG--GTG-G---TCTTTGTAAA--TGT-----AGTAGT-T---CTGTAAACCGTAG--CAAT-AATCCGGAA-TT--TT---CATTAAACA--TTTACCA-TT
gi|12 : ataaaaattaaG-GTGACGATGTA-AGCACT--GCAC--AATCGGCCCCTGTCCACAC-GT-A--A-AA-CAT-----C--------TTA-TAGT---TAAT----TA------T--GT------------GGTT---CA-----A-AAAATT---TAT-TCAA-GA-TCATCC-TG-TGGTAC-GGAAATTACTTTT--TG---TTCG-G-AAAA--T-GCAC--G-GTGGAATC-TTGTAAA--TGT-----AGTAGT-T---CTGTAAACCGTAG--CAATGAATCCGG-AGTTCGTT---CA-TAAC-A--TTTACcct
gi|13 : T---TTAT-C-TGT------T--ACT--T-TCGAG--GGTT---CACCTTGA-AAAT-T---TGT-TCAA-GA-CC-TCC-TG-TA-TAT-GGAAATGAATTTT--GT---TTCG-G-AAAA--T-ACAT--GTGTG---TC-TTATAAA--TAT-----AG-AG--T---CCG-TAACTGGAA--CAAT-AATCCGG-A-TT--TT---CA-TAAA-A--TTTa
gi|14 : taG--GTA-AGCATAA-GCAC--A-TCGGTCC-TGTCCGTAT-GTCA--A-AA-AAA-----TC---AA-GTCA-TG-----TTAT-C-TTA------TACATT--TGT--ATT-GATTGGATA-----A-AAAAAT---TGT-TC-A-GA-AT-TCC-TG-TG-TA--AGAAATctttgctgatggcgagggcattcgtggcataccgacttcctgtaa
gi|15 : tt-AGCATA--GCAC--A-TCGGTCC-TGTCCGTAT-GT-C--A-AA-AAT-----CA---AA-GTCA-TGTTATCTTATACATTG------T--ATT--T-G--ATT-GGT----AA-----A-AAAAAT---TGT-TCAA-GA-CT-TCC-TG-TG-TAT-AGAAATTGTTTtgttgtaactagaacctacatatcatatgcgtatatgttaat
gi|16 : T---TTAG-G-AAAA--T-GCAC--ACGTG---TC-ATGTAGA--TAT-----A---G--T---CCG-AAACCGGAA--CAAT-AATCCAA-A-TT--TT---CA-AAAC-T--TTTACTG-TTTTTGA-CATAG-----------A-A----ATATGTTAAAAA--TGAATT-TGGCC-----AC-ACT-TT----TGTATTACA-ATTTACaactagacctaacataaatcatatgcggtacatgtaaattat
gi|17 : aGG-GT-ATG--GTA-AGCATA--GCAC--A-TCGGCTC-TGTCCGCAC-AT-C--A-AA-AAT-----GA---AA-G-----------TTAT-T-TCA------T--ATT--T-T--ATT-GGTC----------A-AAAAAT---TGT-TCAA-GA-CC-TCC-TG-TG-TAT-GGAAATTACTTTT--GT---TTCG-GAAAAA--T-GCAC--
gi|18 : AA---A------A-------AAC--TT---TAT-TG-AAA--T-GTA-GC-AAAA-C-AGTAGA--TTTCA-TGAA-----AAT-CCG-GATTATTGCTCCGTTTTCG-AACTGTATATTTACA
gi|18 : TGACTTTT--GT---TTCG-G-AAAA--T-GCAC--ATGCA---TT-TTGTAAA--TAT-----AC-AG--T---TCG-AAAACGGAG--CAAT-AATCCGG-A-TT--TT---CA-TGAA-A--TCTACTG-TTTTaaatgcatgtgcattttccgaaacaaaagtca
gi|19 : aaaaaactttattgaaatgtagcTGG-GG-ACG--GTA-AGCATA--GTAC--A-TCAGCCC-TGTCCGCAC-GG-A--A-AA-AAA-----TA---AA-GTTA-TG-----TTAT-C-TTA------T--ATT--T-T--ATTAGG-----CA-----A-AAAAAT---
gi|2 : GGGCTGGCGT-ACG--G-A-AGCATA--GCAC--A-TCGCCGT-TGTCTGCAC-GT-CCAA-AA-TAT-----TA---AA-GTTA-CGT------AT-C-CTA------T--ATT--T-T--GTA-GGT-----A-----A-AAAAAT----GC-CCAAAGA-CC-TCCCTG-TG-TATTGGAAATCCCCCCC--CC---CCCC-G-GAAA--T-GCAC--GTGTG---TC-T-GTAAA--TA------A--AG--TAGACCG-AAACCGGAGAGCAA--AATCCGG-A-TT--TTTTTCA-TAAA-A--TTTGCTGCTTTTTGAACAGTACTGTGACAT--A-ATTTT---TTTTTAAAA--TGAACT-TGGAC-----AC-ACC-TT----TGTATTCAA-TTATACTTG-TTTTA-----T----TTTGAATA---TCTTC-TC---TGAA-AGAT---------G-A-TA-T-----ATTCA--TG-AAAGTTTGGTA--------TAC-CA-GTGCTTG---G-CCAAAGAG---A------A-------ATC--TT---TTT-TG-AAA--CGGTAGGCAAAAAAC-AGTAAAT-TTTTATTGAA-----AAT-CAGCGATTATTATTCCGATTTTGAGACTCTAatatcacttggatgtatg
gi|20 : TTAAA-TTTTATTTG-TGTTA-----T----TTTGA--A---TCTAC-TC---TGAA-AGATAATTATATAG-A-TC-T-----ATTCA--TG-AAAGTTCGGTA--------TACATACACGGTTGTG-G-CCATAGAG---A------ctggtgcagagacaaagatgttctatggaaca
gi|21 : AATGACTTTT--GT---TTCC-G-AAAA--T-GCAC--GTGTG---TC-TTATAAA--TAT-----AG-AG--C---CCG-AAACCGGAG--CAGT-AATCAGG-A-TA--TT---CG-TAAA-A--CTTGCTG-TTTTT
gi|23 : T-ACA--GTA-AGCACA--GCAC--A-TTGACCC-TGTGTGCCC-GT-A--A-AAGAAG-----TA---AA-GTTA-TG-----TTAT-T-CTA------T--ATT--T-C--ATT-
gi|24 : AAA---GAACA-TGGCC-----AC-AAC-TT----TGTATTAAA-ATTGTCTTG-TGTTA-----T----TTTAA--A---CCTAC-AC---TAAA-A
gi|25 : GA-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCTC-TTTCCTCAC-GT-A--A-GA-AA------TA---AA-GTTA-TGTT---
gi|3 : CTGG-GT-GCA--GTA-AGCATAA-GCAC--A-TTGGCCC-TGT------------------------------------TA-TGTT-----AT-C-TTA------T--ATT--T--------GGT-----------A-AAAAATGTTTGT-TCAG-AA-CC-TCT-TG-TG-TAT-GGAAATGACATTT--GT---TTCA-G-AAAA--T-GCACC-ATATG---TC-TTA-AAA--TAT-----AG-AG--T---CCG-AAACCGGAG--CAAT-A-TCCGG---TT--TC---CT-TAAA-AA-TTTACTG-TTCT-GA-CATAATTTTGACAT--A-A----AAATGTTAAAAAA-TGAACT-TGGCC-----AC-ACC-TT----TGTATTAAA--TTTACTGG-TGTTA-----A----TTTGA--A---TGTAC-ACTATTAAA-AAAT---------G-ATTATT-----ATTAA--TG-AAAGTT-----------------TACATGGTTTTG-G-CCATAGAT---A------AAACTTTTAAG--TT---TAT-TG-AAA--C-ATA-TC-AAAAAC-AGTAAA--TTTTA-GGAA-----AAT-CCG-GATTACTGCTCTGGCT
gi|3 : T---CGT-TCAA-GA-CC-TTA--G-TG-TTT-TGAAATTACTTTT--GT---TTTTTG-AAAA--T-GC-CTTGTGCG---TC-TTGTAAA--TA-----------------------GCCAGAG--CAGT-AATCCGG-A-TT--TT---CC-TAAA-A--TTTACTG-TTTTTGA-TATG--TTTCA-AT--A-A----A---CTTAAAAGTTTTATCTATGGCC-----AA-AAC-CA----TGTA--AAC-TTTCATTAA-TAATAATCATT----TTTTA--ATAGTGTAC-AT---TCAA-AT-T---------A-A-CA---------CCA---G-TAAATTTA--A--------TACAAAGGTG--TG---G-CCA---AGTTCATTTTTTA-------ACATTTT---TATGTC-AAAATT-ATG-TC--AGAAC-AGTAAAT-TTTTA-AGGA-----AA--CCG-GA-TATTGCTCCGGTTTCG-GACTCTATATTTatttacaagacgcacaaggcattttcaaaaaacaaaagtaatttcaaaacactaaggtcttgaacga
gi|4 : ctgggtgcagtaagcataagcacattggccctgttatgttatcttatatttggtaaaaaatgtttgttcagaacctcttgtgtatggaaatgacatttgtttcagaaaatgcaccatatgtcttaAGGGCTGG-GC-ATG--GTA-AGCAGA--GCAT--A-TCAGCCT-TGTCCGCAC-TT-T-------TATTTTCATA---AA-TTTACTGTT---TT
gi|4 : aa-A-TT--TT---CA-TAAA----TTTACTG-TTTTTGA-CATAATTTTCACAT--AGA----AAATGTCAAAAA--TGAACA-TGGAC-----AC-ACC-TT----TGTATTAAC-TTTTACTTA----AA-----G----TTTGA--A---TGTAC-AC---TAAA-GGAT---------G-ATTA-T-----ATCTA--TG-AAAGTTTGGTA--------CACATAAATGGTTGT--GACCATATAG---A------A-------AAA--TT---TAT-TT-AAA--T-TTA-AC-AAAAAC-ATTAAA--TTTCA-TGAA-----AATACTG-GATTACTGCTCCGTTTTTG-GACTCTCTATTTATAtgacataattttcacatagaaaatgtcaaaaatgaacatggacacacctttgtattaacttttacttaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaatttatttaaatttaacaaaaacattaaatttcatgaaaatactggattactgctccgtttttggactctctatttataagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|4 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcacttttTGG-GT-GCG--GTA-AGCATA--GTAC--A-TCGGCCC-TGTCCGAAT-GT-T--A-AA-TATAA---TA---AA-ATTG-AG-----CTAT-G-TTA------T--GTT--T-T--ATT-AGT----CG-----A-GATGATG--TGT-TCAA-GA-CC-TCT-TG-TG-TAT-GAAAATGACTTCT--GT---TTCG-G-AAAT--T-GCAC--GTGCG---TC-TTATAAA--TAG-----AG-AG--T---CCA-AAAACGGAG--CAGT-AATCCAGTA-TT--TT---CA-TGAA-A--TTTAATG-TTTTTGT-TA-AATTT--AAAT---------AAATTTT-------TCTATA-TGGTC-----ACAACCATTTATGTGTACCAAA-CTTTCATAGATATAA-----TCATCCTTTA--G---TGTAC-AT---TCAA-A-------------------------CTTTAAGTA-AAAGTT---AA--------TACAAAGGTG--TGT----CCATGTTC---ATTTTT-G-------ACA--TTTTCTATGTG-AAAATT-ATG-TC-AAAAAC-AGTAAA---TTTA-TGAA-----AAT-agacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|5 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcacttttAGGGCTTG-GT-ATG--GTA-AGCATA--GCAC--A-TTGGCCA-TGTCCGCAC-GT-C--A-AA-TAT-----TA---AA-GTTT-TGTT---TTAT-C-TTA------C--ATT--C-T--ATT-GGTC---CA-----A-AAATAT---TGT-TCAA-GA-CC-TTC-TG-TG-TAT-GGAAATTACTTTT--GT---GTCG-G-AAAA--T-GCAT--GTGCG---TC-TTGTAA----AT-----A--AG--T---CCG-AAACCGGAG--CAAT-AAT---A-A-TT--TT---CA-TCAA-T--TTTACTG-TTTGTGA-CATAATTTTGACAT--A-A----AAATGTTAAAAA--TAAACT-TGGCC-----AC-ACA-AT----TGTATTAAA-TTTCACTAA-CTTTA-----T----TTTGA--A---TCTAC-AC---TGGA-CGAT---------G-A-TA-T-----ATTGA--TG-AAAATTTGATA--------TACATAGGTGGTT-T--G-CCATAGAG---A------A-------ATA--TC---TGT-TG-AAA--C-GTA-TC-AAAAAC-AGTCAA--TTTTA-TGAA-----AAT-CCG-GATTATTGCTCCGGTTTCG-GATTCTATATTTACA
gi|6 : AGAGCTGG-GT-GCG--GTA-AGCAGA--GCAC--A-TCGGCCC-TGTCCGCAC-AT-C--A-AA-AAA-----TA---AA-GTGA-TGTT-----AT-T-TTA------T--ATT--T-T--ATT-GGTC---AA-----A-AACAAG---TTT-TCAA-GA-CC-TCC-TG-TG-TAT-AAAAATGACTTTT--GT---TTCG-G-AATA--T-GCAC--GTGTG---CC-TCATAGA--TA------A--AG--T---CCG-AAACCGAAG--CAAT-AATCCGG-G-TT--TT---CA-TAAA-A--TTTACTA-TTTTTGG-CACAAGTTTGACATCAA-A----AAATGTTTAAAA--TGAAAT-AGGCC-----AC-ATC-TT----TGGATTACA-TTTTACTTG-TGTTA-----T----TTCGA--A---TCTAC-AC---TGAA-AGATG--------G-A-TA-T-----ACTCA--TG-AAAGTTTGATA--------TACATATATGGTTGTG-G-CCGTAGAG---A------A-------AAT--TT---TAT-TG-AAA--C-GTA-GC--AAAAC-AGTAAA--TGCTA-TGAATTATCAAT-CAG-AATT
gi|7 : --GT---TTTG-G-AAAC--T-GCAT--GTGCA---TC------------------------------CA-AAACTGGAG--CAAT-AAGCCGG-A-TT--TT---C--CAAA-CTTTTTACTG-tcatt
gi|7 : --TGAACC-TGACC-----AC-ACC-TT----TGTATTAAA-TCTTACTTG-TGTTA-----T----TCTGA--A---TCTAC-AC---TAAA-ACAT---------G-A-TA-TTATATATTCA--TG-AAAGTTTGGTA--------TGCATACATGGTTGT--GGCCACAGAG---A------A-------AAC--TT---TAT-TG-AAA--T-GTA-GC-TAAACC-AGTAAA--TTTTA-TGAA-----AAT-TCA-GATTACTGCTCCAGTTTCG-GACTCTATATTTACAaacctgaccacacctttgtattaaatcttacttgtgttattctgaatctacactaaaacatgatattatatattcatgaaagtttggtatgcatacatggttgtggccacagagaaaactttattgaaatgtagctaaaccagtaaattttatgaaaattcagattactgctccagtttcggactctatatttacaagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|7 : gttttggaaactgcatgtgcatccaaaactggagcaataagccggattttccaaactttttacGCAC-TT-A--A-AA-AAA-----TA---AAAGTTA-TGTT-----AT-C-TTG------T--ATT--T-T--ATT-GATC---TA-----A-ATTATT---TGT-TTAA-GA-CC-TCC-TG-TG-TAT-AGATATTACTTTT--GT---TTCA-G-AAAA--T-GCAT--GTTAG---TC-TTGTAAA--TAT-----AG-AG--T---CCG-AAACTGGAG--CAGT-AATCTGA-A-TT--TT---CA-TAAA-A--TTTACTG-GTTTagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|8 : gttttggaaactgcatgtgcatccaaaactggagcaataagccggattttccaaactttttactgaacctgaccacacctttgtattaaatcttacttgtgttattctgaatctacactaaaacatgatattatatattcatgaaagtttggtatgcatacatggttgtggccacagagaaaactttattgaaatgtagctGCTGG-AT-ACG--GTA-AGCATA--GCAC--aagtttcaacga
gi|8 : aaataTTTTTA-CATAATTTTGACAT--T-A----AAATGTTAAAAA-------------------AG-ATC-TT----TGTATTAAACTTTTTTTGG-TGTTA-----T----TTTGA--A---TGTAC-AT---TAAG-AGAT---------G-A-TG-T-----ATTCA--TA-AAAGTTTGGTA--------TACGTACATGATTGTG-G-TCATAGAG---A------A-------AAC--TT---TAC-TG-AAA--T-GTA-GC-TAAAAC-GGTAAA--TTTGA-TGAA-----AAT-CCG-GATTACTGCTCtgtttgtttgtttttttctttttacataattttgacattaaaatgttaaaaaagatctttgtattaaactttttttggtgttattttgaatgtacattaagagatgatgtattcataaaagtttggtatacgtacatgattgtggtcatagagaaaactttactgaaatgtagctaaaacggtaaatttgatgaaaatccggattactgctc
gi|9 : aaatagctggatacggtaagcatagcactgtttgtttgtttttttc-TTTGTGA-CATAATT-----A---A-A----AAA----AAAAA--TGAACT-TCGC------A--ACC-TT----TGTATCAAA-TTTTACTTG-TGTTA-----T----TTTGA--A----ATGCTAC---CAAA-AGTT---------GAA-TT-T-----ATTTC--TA-AAAG-TTGGTATATCATCGTACATACATGATTGTG-G-CCATAGCG---C------A-------A-A--TT---TAT-TGAAAA--CAGTAGGC-AAAAACTAGTAAAATTTTTA-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGGTGAGCAATTTATATCCTCAAGGGTTACAGATAAACTTTGCTGCTGGTGGGGCCATTTGTAGTGTACCA
Alignments
lowQualScore : 11 1111111 2222222 2222222222 11111 11111111111 111111111 11111111 1111111111 1111111 1 11 11111
lowQualScore : 2 2 33 2 22 33 4 4 2 666 8888888 444 2 9999999 2 2 999999 33 2 66 3333 2 2 1111111111 0 444 2 2 2 2 2 2 2 5 2 1 33 333 2 2 33 2 55 1 444 2 3 11111 5 33 2 4 2 33 444 2 2 3333 2 3 00000000000 3 888888 0 4 44 3 88888 3 3 88888 44 555 0 3 555 3 888888888 3 3 444 99999 3 33333333 99 3 4444444444 1111111 88 3 3 7 0 66 4 33 4 11111 4 4 6
lowQualScore : . . .. . .. .. . . . ... ....... ... . ....... . . ...... .. . .. .... . . .......... . ... . . . . . . . . . . .. ... . . .. . .. . ... . . ..... . .. . . . .. ... . . .... . . ........... . ...... . . .. . ..... . . ..... .. ... . . ... . ......... . . ... ..... . ........ .. . .......... ....... .. . . . . .. . .. . ..... . . .
lowQualScore : 9 7 44 4 66 11 7 7 2 555 6666666 111 4 6666666 4 4 111111 22 4 55 5555 4 4 9999999999 8 111 5 5 5 5 5 5 5 0 4 0 22 999 2 2 11 2 33 9 111 4 2 44444 0 44 5 7 4 22 111 4 4 9999 7 6 00000000000 6 777777 7 0 66 3 33333 7 3 33333 66 888 4 3 888 3 222222222 6 6 222 11111 6 22222222 00 6 6666666666 8888888 22 6 6 3 9 00 0 55 0 11111 4 4 7
consensus : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT-N-AAA-A-A---TA---AA-GTTATGTT---TTAT-C-TTA------T--A-TT--T-T--AT-T-GGTC---CA----AAAAAAT---T-GT-TCAA-GA-CC-TCC-TG-TG-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAATATAG-A-G-TCCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAATTTTACTT-GTGTTA-----TTTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TACATACATGGTTG-TGGCCATAGAG----------AA-------AA-CTTTAT-TG-AAAC-GTA-GC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTACTGCTCCGGTTTCG-GACTCTATATTTACA
Reference ( family-943 ) : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT-N-AAA-A-AT--TA---AA-GTTATGTT---TTAT-C-TTA------T--A-TT--T-T--AT-T-GGTC---CA----AAAAAAT---T-GT-TCAA-GA-CC-TCC-TG-TG-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAATATAG-A-G-TCCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAATTTTACTT-GTGTTA-----TTTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TACATACGTGGTTG-TGGCCATAGAG----------AA-------AA-NTTTAT-TG-AAAC-GTA-GC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTACTGCTCCGGTTTCG-GACTCTATATTTACA
gi|1 : GG-GT-ACG--GTA-AGCATATAGCAC--A-TCTGCCC-TGTCTGCAT-GT-C-AAA-A-AT--TACCAAA-GTT-TGTT-----AT-G-TTA------T--A-TT--T-C--AT-T-GGTC---CAGAAAAAAAAAT---G-AT-TCAA-GA-CC-TCC-TGGTG-TAT-GGAAACGACTCTT--ATATTTTCG-G-AAAA--TTGTAC--GTGTG---TC-TTGTAAAT-----------------CC------------ACCCG--A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAA-----------A-A----------T-AAAAT--TGAACT-TGGCCACAAAACACCTTTGTATTAAA--TTACTT-GCGAAA-----TTTTGA--A---TCTAC-AC---TAAACAGAT---------G-A-T-A-T-----ATCTATGAAAAGTTTGGTT--------TACATACATGATTGTTAGCCATTTAG----------AA-------AA-C-TTAT-CT-AAAT-GTC-GC-AA
gi|1 : c-GT-ACG--GTA-AGCATAT-ATATTAA-TCGGCCC--GTCCGAACCGT-T-AGA-A-----TA---TA-ATTGTGGT---TTAT-C-TTAA-----T--G-TT--T-T--AT-T-GG-C---CA----ATGAATT---TTGTGTCA--GA-CC-TCT-TG--G-TGT-TGAAATGACTTTT--GT---TTTG-G-GAAAACT-GCAC--GTGCG---TC-TTATAAAtgtttcagtacttcgttaatagttttataagacgcacgtgcagttttcccaaaacaaaagtcatttcaacaccaagaggtctgacacaaaattcattggccaataaaacattaagataaaccacaattatattctaacggttcggacgggccgattaatatatatgcttaccgtac
gi|10 : cgggtacggtaagcatatagcacatctgccctgtctgcatgtcaaaaattaccaaagtttgttatgttatatttcattggtccagaaaaaaaaatgattcaagacctcctggtgtatggaaacgactcttatattttcggaaaattgtacgtgtgtcttgtaaatccacccgattttcataaaatttactgtttttgacataaaataaaattgaacttggccacaaaacacctttgtattaaattacttgcgaaattttgaatctacactaaacagatgatatatctatgaaaagtttggtttacatacatgattgttagccatttagaaaacttatctaaatgtcgcaatgtttcagtacttcgttaatagtCAC--A-TCGGCCC-TGTTTGCAC-GT-A-AAA-A------A---AA-CTTACG-----TTAT-C-TTATACATGT--A-TT--T-C--AT-T-GGTCGA-AA----AAAAAAA---T-GC-GCAA-GA-TC-TCT-TG-TG-TAT-GG
gi|10 : AT-GGAAATTACTTTC--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGT-AATATAG-ATT-TCCG-AAACCGGAG--AAAT-AATCCGG-A-TT--TT---CA-T--AA-A--TTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaattactttcgtttcggaaaatgcacgtgcgtcttgtaatatagatttccgaaaccggagaaataatccggattttcataaattt
gi|11 : cacatcggccctgtttgcacgtaaaaaaaacttacgttatcttatacatgtatttcattggtcgaaaaaaaaaatgcgcaagatctcttgtgtatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTGG-GT-ACG--GTAGAGCACCT-GCAC--AATCGGCCCCTGTCCACAC-GT-A-AAA---------------------------CAT-C-TT-------C--A-CTAGT-T--AT-T-GGTT---CA----AAAAATT---T-AT-TCAA-GAATC-TCC-TG-TGGTAC-G-AAATTACTTTTTGGT---GTCG-G-AAAA--T-GCAG--GTG-G---TCTTTGTAAATGTAGTA-GTTCTGTAAACCGTAG--CAAT-AATCCGGAA-TT--TT---CATT-AAACA--TTTACCA-TT
gi|12 : ataaaaattaaG-GTGACGATGTA-AGCACT--GCAC--AATCGGCCCCTGTCCACAC-GT-A-AAA---------------------------CAT-C-TTA------T--AGTTAAT-T--ATGT-GGTT---CA----AAAAATT---T-AT-TCAA-GA-TCATCC-TG-TGGTAC-GGAAATTACTTTT--TG---TTCG-G-AAAA--T-GCAC--G-GTGGAATC-TTGTAAATGTAGTA-GTTCTGTAAACCGTAG--CAATGAATCCGG-AGTTCGTT---CA-T-AAC-A--TTTACcct
gi|13 : T---TTAT-C-TGT------T--A-CT--T-TCGAG---GGTT---CACCTTGAAAATT---T-GT-TCAA-GA-CC-TCC-TG-TA-TAT-GGAAATGAATTTT--GT---TTCG-G-AAAA--T-ACAT--GTGTG---TC-TTATAAATATAG-A-G-TCCG-TAACTGGAA--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTa
gi|14 : taG--GTA-AGCATAA-GCAC--A-TCGGTCC-TGTCCGTAT-GTCA-AAA-A-AA--TC---AA-GTCATG-----TTAT-C-TTA------TACA-TT--TGT--AT-T-GATTGGATA----AAAAAAT---T-GT-TC-A-GA-AT-TCC-TG-TG-TA--AGAAATctttgctgatggcgagggcattcgtggcataccgacttcctgtaa
gi|15 : tt-AGCATA--GCAC--A-TCGGTCC-TGTCCGTAT-GT-C-AAA-A-AT--CA---AA-GTCATGTTATCTTATACATTG------T--A-TT--T-G--AT-T-GGT----AA----AAAAAAT---T-GT-TCAA-GA-CT-TCC-TG-TG-TAT-AGAAATTGTTTtgttgtaactagaacctacatatcatatgcgtatatgttaat
gi|16 : T---TTAG-G-AAAA--T-GCAC--ACGTG---TC-ATGTAGATATAG-----TCCG-AAACCGGAA--CAAT-AATCCAA-A-TT--TT---CA-A-AAC-T--TTTACTG-TTTTTGA-CATAG-----------A-A----ATATGTT-AAAAA--TGAATT-TGGCC-----ACACTTTTGTATTACAATTTACaactagacctaacataaatcatatgcggtacatgtaaattat
gi|17 : aGG-GT-ATG--GTA-AGCATA--GCAC--A-TCGGCTC-TGTCCGCAC-AT-C-AAA-A-AT--GA---AA-GTTAT-----------T-TCA------T--A-TT--T-T--AT-T-GGTC---------AAAAAAT---T-GT-TCAA-GA-CC-TCC-TG-TG-TAT-GGAAATTACTTTT--GT---TTCG-GAAAAA--T-GCAC--
gi|18 : AA----------AA-------AA-CTTTAT-TG-AAAT-GTA-GC-AAAA-C-AGTAGA--TTTCA-TGAA-----AAT-CCG-GATTATTGCTCCGTTTTCG-AACTGTATATTTACA
gi|18 : TGACTTTT--GT---TTCG-G-AAAA--T-GCAC--ATGCA---TT-TTGTAAATATAC-A-G-TTCG-AAAACGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-GAA-A--TCTACTG-TTTTaaatgcatgtgcattttccgaaacaaaagtca
gi|19 : aaaaaactttattgaaatgtagcTGG-GG-ACG--GTA-AGCATA--GTAC--A-TCAGCCC-TGTCCGCAC-GG-A-AAA-A-AA--TA---AA-GTTATG-----TTAT-C-TTA------T--A-TT--T-T--AT-TAGG-----CA----AAAAAAT---
gi|2 : GGGCTGGCGT-ACG--G-A-AGCATA--GCAC--A-TCGCCGT-TGTCTGCAC-GT-CCAAA-ATAT--TA---AA-GTTACGT------AT-C-CTA------T--A-TT--T-T--GT-A-GGT-----A----AAAAAAT-----GC-CCAAAGA-CC-TCCCTG-TG-TATTGGAAATCCCCCCC--CC---CCCC-G-GAAA--T-GCAC--GTGTG---TC-T-GTAAATAAAGTA-G-ACCG-AAACCGGAGAGCAA--AATCCGG-A-TT--TTTTTCA-T-AAA-A--TTTGCTGCTTTTTGAACAGTACTGTGACAT--A-ATTTT---TTTT-TAAAA--TGAACT-TGGAC-----ACACCTTTGTATTCAATTATACTT-GTTTTA-----TTTTGAATA---TCTTC-TC---TGAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TAC-CA-GTGCT---TGGCCAAAGAG----------AA-------AT-CTTTTT-TG-AAACGGTAGGCAAAAAAC-AGTAAAT-TTTTATTGAA-----AAT-CAGCGATTATTATTCCGATTTTGAGACTCTAatatcacttggatgtatg
gi|20 : TTAAATTTTATTT-GTGTTA-----TTTTGA--A---TCTAC-TC---TGAA-AGATAATTATATAG-A-T-C-T-----ATTCATG-AAAGTTCGGTA--------TACATACACGGTTG-TGGCCATAGAG----------Actggtgcagagacaaagatgttctatggaaca
gi|21 : AATGACTTTT--GT---TTCC-G-AAAA--T-GCAC--GTGTG---TC-TTATAAATATAG-A-G-CCCG-AAACCGGAG--CAGT-AATCAGG-A-TA--TT---CG-T-AAA-A--CTTGCTG-TTTTT
gi|23 : T-ACA--GTA-AGCACA--GCAC--A-TTGACCC-TGTGTGCCC-GT-A-AAAGA-AG--TA---AA-GTTATG-----TTAT-T-CTA------T--A-TT--T-C--AT-T-
gi|24 : AAA---GAACA-TGGCC-----ACAACTTTGTATTAAAATTGTCTT-GTGTTA-----TTTTAA--A---CCTAC-AC---TAAA-A
gi|25 : GA-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCTC-TTTCCTCAC-GT-A-AGA-A-A---TA---AA-GTTATGTT---
gi|3 : CTGG-GT-GCA--GTA-AGCATAA-GCAC--A-TTGGCCC-TGT--------------------------------TATGTT-----AT-C-TTA------T--A-TT--T---------GGT----------AAAAAATGTTT-GT-TCAG-AA-CC-TCT-TG-TG-TAT-GGAAATGACATTT--GT---TTCA-G-AAAA--T-GCACC-ATATG---TC-TTA-AAATATAG-A-G-TCCG-AAACCGGAG--CAAT--ATCCGG---TT--TC---CT-TAAAA-A--TTTACTG--TTCTGA-CATAATTTTGACAT--A-A----AAATGTTAAAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAA-TTTACTG-GTGTTA-----ATTTGA--A---TGTAC-ACTATTAAA-AAAT---------G-ATT-ATT-----ATTAATG-AAAGTT-----------------TACATGGTTT-TGGCCATAGAT----------AAAACTTTTAA-GTTTAT-TG-AAAC-ATA-TC-AAAAAC-AGTAAA--TTTTA-GGAA-----AAT-CCG-GATTACTGCTCTGGCT
gi|3 : T---C-GT-TCAA-GA-CC-TTA--G-TG-TTT-TGAAATTACTTTT--GT---TTTTTG-AAAA--T-GC-CTTGTGCG---TC-TTGTAAATA---------------GCCAGAG--CAGT-AATCCGG-A-TT--TT---CC-T-AAA-A--TTTACTG-TTTTTGA-TATG--TTTCA-AT--A-A----A---CTT-AAAAGTTTTATCTATGGCC-----AAAACCATGTA--AACTTTCATTA-ATAATAATCATTTTTTA--ATAGTGTAC-AT---TCAA-AT-T---------A-A-C-A---------CCA-G-TAAATTTA--A--------TACAAA---GG-TG-TGGCCA---AGTTCATTTTTTAA-------CATTTTTATGTC-AAAA-TTATGT-CAGAAC-AGTAAAT-TTTTA-AGGA-----AA--CCG-GA-TATTGCTCCGGTTTCG-GACTCTATATTTatttacaagacgcacaaggcattttcaaaaaacaaaagtaatttcaaaacactaaggtcttgaacga
gi|4 : ctgggtgcagtaagcataagcacattggccctgttatgttatcttatatttggtaaaaaatgtttgttcagaacctcttgtgtatggaaatgacatttgtttcagaaaatgcaccatatgtcttaAGGGCTGG-GC-ATG--GTA-AGCAGA--GCAT--A-TCAGCCT-TGTCCGCAC-
gi|4 : aa-A-TT--TT---CA-T-AAA----TTTACTG-TTTTTGA-CATAATTTTCACAT--AGA----AAATGTC-AAAAA--TGAACA-TGGAC-----ACACCTTTGTATTAACTTTTACTT-AA---A-----GTTTGA--A---TGTAC-AC---TAAA-GGAT---------G-A-TTA-T-----ATCTATG-AAAGTTTGGTA--------CACATAAATGGTTG-TGACCATATAG----------AA-------AA-ATTTAT-TT-AAAT-TTA-AC-AAAAAC-ATTAAA--TTTCA-TGAA-----AATACTG-GATTACTGCTCCGTTTTTG-GACTCTCTATTTATAttttattttcataaatttactgtttttgacataattttcacatagaaaatgtcaaaaatgaacatggacacacctttgtattaacttttacttaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaatttatttaaatttaacaaaaacattaaatttcatgaaaatactggattactgctccgtttttggactctctatttataagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|4 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcacttttTGG-GT-GCG--GTA-AGCATA--GTAC--A-TCGGCCC-TGTCCGAAT-GT-T-AAA-T-ATAATA---AA-ATTGAG-----CTAT-G-TTA------T--G-TT--T-T--AT-T-AGTC---GA----GATGATG---T-GT-TCAA-GA-CC-TCT-TG-TG-TAT-GAAAATGACTTCT--GT---TTCG-G-AAAT--T-GCAC--GTGCG---TC-TTATAAATAGAG-A-G-TCCA-AAAACGGAG--CAGT-AATCCAGTA-TT--TT---CA-T-GAA-A--TTTAATG-TTTTTGT-TA-AATTT--AAAT--A-A----Aagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|5 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcacttttattttcataaatttactgtttttgacataattttcacatagaaaatgtcaaaaatgaacatggacacacctttgtattaacttttacttaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaaAGGGCTTG-GT-ATG--GTA-AGCATA--GCAC--A-TTGGCCA-TGTCCGCAC-GT-C-AAA-T-AT--TA---AA-GTTTTGTT---TTAT-C-TTA------C--A-TT--C-T--AT-T-GGTC---CA----AAAATAT---T-GT-TCAA-GA-CC-TTC-TG-TG-TAT-GGAAATTACTTTT--GT---GTCG-G-AAAA--T-GCAT--GTGCG---TC-TTGTAAATA----A-G-TCCG-AAACCGGAG--CAAT-AAT---A-A-TT--TT---CA-T-CAA-T--TTTACTG-TTTGTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TAAACT-TGGCC-----ACACAATTGTATTAAATTTCACTA-ACTTTA-----TTTTGA--A---TCTAC-AC---TGGA-CGAT---------G-A-T-A-T-----ATTGATG-AAAATTTGATA--------TACATAGGTGGTT--T-GCCATAGAG----------AA-------AT-ATCTGT-TG-AAAC-GTA-TC-AAAAAC-AGTCAA--TTTTA-TGAA-----AAT-CCG-GATTATTGCTCCGGTTTCG-GATTCTATATTTACA
gi|6 : AGAGCTGG-GT-GCG--GTA-AGCAGA--GCAC--A-TCGGCCC-TGTCCGCAC-AT-C-AAA-A-AA--TA---AA-GTGATGTT-----AT-T-TTA------T--A-TT--T-T--AT-T-GGTC---AA----AAACAAG---T-TT-TCAA-GA-CC-TCC-TG-TG-TAT-AAAAATGACTTTT--GT---TTCG-G-AATA--T-GCAC--GTGTG---CC-TCATAG--ATAA-A-G-TCCG-AAACCGAAG--CAAT-AATCCGG-G-TT--TT---CA-T-AAA-A--TTTACTA-TTTTTGG-CACAAGTTTGACATCAA-A----AAATGTT-TAAAA--TGAAAT-AGGCC-----ACATCTTTGGATTACATTTTACTT-GTGTTA-----TTTCGA--A---TCTAC-AC---TGAA-AGATG--------G-A-T-A-T-----ACTCATG-AAAGTTTGATA--------TACATATATGGTTG-TGGCCGTAGAG----------AA-------AA-TTTTAT-TG-AAAC-GTA-GC--AAAAC-AGTAAA--TGCTA-TGAATTATCAAT-CAG-AATT
gi|7 : --GT---TTTG-G-AAAC--T-GCAT--GTGCA---TC--------------------CA-AAACTGGAG--CAAT-AAGCCGG-A-TT--TT---C--C-AAA-CTTTTTACTG-tcatt
gi|7 : --TGAACC-TGACC-----ACACCTTTGTATTAAATCTTACTT-GTGTTA-----TTCTGA--A---TCTAC-AC---TAAA-ACAT---------G-A-T-A-TTATATATTCATG-AAAGTTTGGTA--------TGCATACATGGTTG-TGGCCACAGAG----------AA-------AA-CTTTAT-TG-AAAT-GTA-GC-TAAACC-AGTAAA--TTTTA-TGAA-----AAT-TCA-GATTACTGCTCCAGTTTCG-GACTCTATATTTACAaacctgaccacacctttgtattaaatcttacttgtgttattctgaatctacactaaaacatgatattatatattcatgaaagtttggtatgcatacatggttgtggccacagagaaaactttattgaaatgtagctaaaccagtaaattttatgaaaattcagattactgctccagtttcggactctatatttacaagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|7 : gttttggaaactgcatgtgcatccaaaactggagcaataagccggattttccaaactttttacGCAC-TT-A-AAA-A-AA--TA---AAAGTTATGTT-----AT-C-TTG------T--A-TT--T-T--AT-T-GATC---TA----AATTATT---T-GT-TTAA-GA-CC-TCC-TG-TG-TAT-AGATATTACTTTT--GT---TTCA-G-AAAA--T-GCAT--GTTAG---TC-TTGTAAATATAG-A-G-TCCG-AAACTGGAG--CAGT-AATCTGA-A-TT--TT---CA-T-AAA-A--TTTACTG-GTTTagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|8 : gttttggaaactgcatgtgcatccaaaactggagcaataagccggattttccaaactttttactgaacctgaccacacctttgtattaaatcttacttgtgttattctgaatctacactaaaacatgatattatatattcatgaaagtttggtatgcatacatggttgtggccacagagaaaactttattgaaatgtagctGCTGG-AT-ACG--GTA-AGCATA--GCAC--aagtttcaacga
gi|8 : aaataTTTTTA-CATAATTTTGACAT--T-A----AAATGTT-AAAAA-------------------AGATCTTTGTATTAAACTTTTTTTGGTGTTA-----TTTTGA--A---TGTAC-AT---TAAG-AGAT---------G-A-T-G-T-----ATTCATA-AAAGTTTGGTA--------TACGTACATGATTG-TGGTCATAGAG----------AA-------AA-CTTTAC-TG-AAAT-GTA-GC-TAAAAC-GGTAAA--TTTGA-TGAA-----AAT-CCG-GATTACTGCTCtgtttgtttgtttttttctttttacataattttgacattaaaatgttaaaaaagatctttgtattaaactttttttggtgttattttgaatgtacattaagagatgatgtattcataaaagtttggtatacgtacatgattgtggtcatagagaaaactttactgaaatgtagctaaaacggtaaatttgatgaaaatccggattactgctc
gi|9 : aaatagctggatacggtaagcatagcactgtttgtttgtttttttc-TTTGTGA-CATAATT-----A---A-A----AAA-----AAAAA--TGAACT-TCGC------A-ACCTTTGTATCAAATTTTACTT-GTGTTA-----TTTTGA--A----ATGCTAC---CAAA-AGTT---------GAA-T-T-T-----ATTTCTA-AAAG-TTGGTATATCATCGTACATACATGATTG-TGGCCATAGCG----------CA-------AA--TTTAT-TGAAAACAGTAGGC-AAAAACTAGTAAAATTTTTA-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGGTGAGCAATTTATATCCTCAAGGGTTACAGATAAACTTTGCTGCTGGTGGGGCCATTTGTAGTGTACCA
Alignments
lowQualScore : 11 11111111111111111111 2222222 2222222222 11111 11111111111 111111111 11111111 111111 11111111 1 11 11111
lowQualScore : 2 2 33 2 22 33 4 4 2 777 88888888888888888888 2 2 6666666 2 2 999999 33 2 66 3333 2 2 1111111111 0 444 2 2 2 2 2 2 2 2 2 2 1 33 333 2 2 33 2 55 1 444 2 3 11111 5 33 2 4 2 33 444 2 2 3333 2 3 00000000000 3 888888 0 4 44 3 88888 3 3 88888 44 555 0 3 555 3 888888888 3 3 444 99999 3 33333333 3 3 000000 88888888 3 3 7 0 66 4 33 4 11111 4 4 6
lowQualScore : . . .. . .. .. . . . ... .................... . . ....... . . ...... .. . .. .... . . .......... . ... . . . . . . . . . . . .. ... . . .. . .. . ... . . ..... . .. . . . .. ... . . .... . . ........... . ...... . . .. . ..... . . ..... .. ... . . ... . ......... . . ... ..... . ........ . . ...... ........ . . . . .. . .. . ..... . . .
lowQualScore : 9 7 44 4 66 11 7 7 2 111 33333333333333333333 2 2 1111111 4 4 111111 22 4 55 5555 4 4 9999999999 8 111 5 5 5 5 5 5 5 5 5 4 0 22 999 2 2 11 2 33 9 111 4 2 44444 0 44 5 7 4 22 111 4 4 9999 7 6 00000000000 6 777777 7 0 66 3 33333 7 3 33333 66 888 4 3 888 3 222222222 6 6 222 11111 6 22222222 6 6 555555 77777777 6 6 3 9 00 0 55 0 11111 4 4 7
consensus : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT--NAA---A---A-A-T----A---AA-GTTA-TGTT---TTAT-C-TTA------T--A-TT--T-T--AT-T-GGTC---CA----AAAAAAT---T-GT-TCAA-GA-CC-TCC-TG-T-G-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAATATAG-A-G-TCCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAATTTTACTT-GTGTTA-----TTTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TACATACA-TGGTTG-TGGCCATAGAGAA------AAC-------TTTAT-TG-AAAC-GTA-GC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTACTGCTCCGGTTTCG-GACTCTATATTTACA
Reference ( family-943 ) : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT--NAA---A---A-A-T----A---AA-GTTA-TGTT---TTAT-C-TTA------T--A-TT--T-T--AT-T-GGTC---CA----AAAAAAT---T-GT-TCAA-GA-CC-TCC-TG-T-G-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAATATAG-A-G-TCCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAATTTTACTT-GTGTTA-----TTTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TACATACA-TGGTTG-TGGCCATAGAGAA------AAC-------TTTAT-TG-AAAC-GTA-GC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTACTGCTCCGGTTTCG-GACTCTATATTTACA
gi|1 : GG-GT-ACG--GTA-AGCATATAGCAC--A-TCTGCCC-TGTCTGCAT-GT--CAA---A---A-A-TTACCA---AA-GTT--TGTT-----AT-G-TTA------T--A-TT--T-C--AT-T-GGTC---CAGAAAAAAAAAT---G-AT-TCAA-GA-CC-TCC-TGGT-G-TAT-GGAAACGACTCTT--ATATTTTCG-G-AAAA--TTGTAC--GTGTG---TC-TTGTAAAT-----------------CC------------ACCCG--A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAA-----------A-A----------T-AAAAT--TGAACT-TGGCCACAAAACACCTTTGTATTAAA--TTACTT-GCGAAA-----TTTTGA--A---TCTAC-AC---TAAACAGAT---------G-A-T-A-T-----ATCTATGAAAAGTTTGGTT--------TACATACA-TGATTGTTAGCCATTTAGAA------AAC--------TTAT-CT-AAAT-GTC-GC-AA
gi|1 : c-GT-ACG--GTA-AGCATAT-ATATTAA-TCGGCCC--GTCCGAACCGT--TAG---A---ATA-T----A---A---TTG-TGGT---TTAT-C-TTAA-----T--G-TT--T-T--AT-T-GG-C---CA----ATGAATT---TTGTGTCA--GA-CC-TCT-TG---G-TGT-TGAAATGACTTTT--GT---TTTG-G-GAAAACT-GCAC--GTGCG---TC-TTATAAAtgtttcagtacttcgttaatagttttataagacgcacgtgcagttttcccaaaacaaaagtcatttcaacaccaagaggtctgacacaaaattcattggccaataaaacattaagataaaccacaattatattctaacggttcggacgggccgattaatatatatgcttaccgtac
gi|10 : cgggtacggtaagcatatagcacatctgccctgtctgcatgtcaaaaattaccaaagtttgttatgttatatttcattggtccagaaaaaaaaatgattcaagacctcctggtgtatggaaacgactcttatattttcggaaaattgtacgtgtgtcttgtaaatccacccgattttcataaaatttactgtttttgacataaaataaaattgaacttggccacaaaacacctttgtattaaattacttgcgaaattttgaatctacactaaacagatgatatatctatgaaaagtttggtttacatacatgattgttagccatttagaaaacttatctaaatgtcgcaatgtttcagtacttcgttaatagtCAC--A-TCGGCCC-TGTTTGCAC-GT--AAA---A---A--------A---AA-CTTA-CG-----TTAT-C-TTATACATGT--A-TT--T-C--AT-T-GGTCGA-AA----AAAAAAA---T-GC-GCAA-GA-TC-TCT-TG-T-G-TAT-GG
gi|10 : AT-GGAAATTACTTTC--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGT-AATATAG-ATT-TCCG-AAACCGGAG--AAAT-AATCCGG-A-TT--TT---CA-T--AA-A--TTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaattactttcgtttcggaaaatgcacgtgcgtcttgtaatatagatttccgaaaccggagaaataatccggattttcataaattt
gi|11 : cacatcggccctgtttgcacgtaaaaaaaacttacgttatcttatacatgtatttcattggtcgaaaaaaaaaatgcgcaagatctcttgtgtatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTGG-GT-ACG--GTAGAGCACCT-GCAC--AATCGGCCCCTGTCCACAC-GT--AAA---A--------------------------------CAT-C-TT-------C--A-CTAGT-T--AT-T-GGTT---CA----AAAAATT---T-AT-TCAA-GAATC-TCC-TG-T-GGTAC-G-AAATTACTTTTTGGT---GTCG-G-AAAA--T-GCAG--GTG-G---TCTTTGTAAATGTAGTA-GTTCTGTAAACCGTAG--CAAT-AATCCGGAA-TT--TT---CATT-AAACA--TTTACCA-TT
gi|12 : ataaaaattaaG-GTGACGATGTA-AGCACT--GCAC--AATCGGCCCCTGTCCACAC-GT--AAA---A--------------------------------CAT-C-TTA------T--AGTTAAT-T--ATGT-GGTT---CA----AAAAATT---T-AT-TCAA-GA-TCATCC-TG-TGG-TAC-GGAAATTACTTTT--TG---TTCG-G-AAAA--T-GCAC--G-GTGGAATC-TTGTAAATGTAGTA-GTTCTGTAAACCGTAG--CAATGAATCCGG-AGTTCGTT---CA-T-AAC-A--TTTACcct
gi|13 : T---TTAT-C-TGT------T--A-CT--T-TCGAG---GGTT---CACCTTGAAAATT---T-GT-TCAA-GA-CC-TCC-TG-T-A-TAT-GGAAATGAATTTT--GT---TTCG-G-AAAA--T-ACAT--GTGTG---TC-TTATAAATATAG-A-G-TCCG-TAACTGGAA--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTa
gi|14 : taG--GTA-AGCATAA-GCAC--A-TCGGTCC-TGTCCGTAT-GTCAAAA---A---A-A-T----C---AA-GTCA-TG-----TTAT-C-TTA------TACA-TT--TGT--AT-T-GATTGGATA----AAAAAAT---T-GT-TC-A-GA-AT-TCC-TG-T-G-TA--AGAAATctttgctgatggcgagggcattcgtggcataccgacttcctgtaa
gi|15 : tt-AGCATA--GCAC--A-TCGGTCC-TGTCCGTAT-GT--CAA---A---A-A-TC---A---AA-GTCA-TGTTATCTTATACATTG------T--A-TT--T-G--AT-T-GGT----AA----AAAAAAT---T-GT-TCAA-GA-CT-TCC-TG-T-G-TAT-AGAAATTGTTTtgttgtaactagaacctacatatcatatgcgtatatgttaat
gi|16 : T---TTAG-G-AAAA--T-GCAC--ACGTG---TC-ATGTAGATATAG-----TCCG-AAACCGGAA--CAAT-AATCCAA-A-TT--TT---CA-A-AAC-T--TTTACTG-TTTTTGA-CATAG-----------A-A----ATATGTT-AAAAA--TGAATT-TGGCC-----ACACTTTTGTATTACAATTTACaactagacctaacataaatcatatgcggtacatgtaaattat
gi|17 : aGG-GT-ATG--GTA-AGCATA--GCAC--A-TCGGCTC-TGTCCGCAC-AT--CAA---A---A-A-TG---A---AA-GTTA-T-----------T-TCA------T--A-TT--T-T--AT-T-GGTC---------AAAAAAT---T-GT-TCAA-GA-CC-TCC-TG-T-G-TAT-GGAAATTACTTTT--GT---TTCG-GAAAAA--T-GCAC--
gi|18 : AAAA------AAC-------TTTAT-TG-AAAT-GTA-GC-AAAA-C-AGTAGA--TTTCA-TGAA-----AAT-CCG-GATTATTGCTCCGTTTTCG-AACTGTATATTTACA
gi|18 : TGACTTTT--GT---TTCG-G-AAAA--T-GCAC--ATGCA---TT-TTGTAAATATAC-A-G-TTCG-AAAACGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-GAA-A--TCTACTG-TTTTaaatgcatgtgcattttccgaaacaaaagtca
gi|19 : aaaaaactttattgaaatgtagcTGG-GG-ACG--GTA-AGCATA--GTAC--A-TCAGCCC-TGTCCGCAC-GGA-AAA---A---A-A-T----A---AA-GTTA-TG-----TTAT-C-TTA------T--A-TT--T-T--AT-TAGG-----CA----AAAAAAT---
gi|2 : GGGCTGGCGT-ACG--G-A-AGCATA--GCAC--A-TCGCCGT-TGTCTGCAC-GT--CCA---A---A-A-T----ATTAAA-GTTA-CGT------AT-C-CTA------T--A-TT--T-T--GT-A-GGT-----A----AAAAAAT-----GC-CCAAAGA-CC-TCCCTG-T-G-TATTGGAAATCCCCCCC--CC---CCCC-G-GAAA--T-GCAC--GTGTG---TC-T-GTAAATAAAGTA-G-ACCG-AAACCGGAGAGCAA--AATCCGG-A-TT--TTTTTCA-T-AAA-A--TTTGCTGCTTTTTGAACAGTACTGTGACAT--A-ATTTT---TTTT-TAAAA--TGAACT-TGGAC-----ACACCTTTGTATTCAATTATACTT-GTTTTA-----TTTTGAATA---TCTTC-TC---TGAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TAC---CAGTGCT---TGGCCAAAGAGAA------ATC-------TTTTT-TG-AAACGGTAGGCAAAAAAC-AGTAAAT-TTTTATTGAA-----AAT-CAGCGATTATTATTCCGATTTTGAGACTCTAatatcacttggatgtatg
gi|20 : TTAAATTTTATTT-GTGTTA-----TTTTGA--A---TCTAC-TC---TGAA-AGATAATTATATAG-A-T-C-T-----ATTCATG-AAAGTTCGGTA--------TACATACA-CGGTTG-TGGCCATAGAGActggtgcagagacaaagatgttctatggaaca
gi|21 : AATGACTTTT--GT---TTCC-G-AAAA--T-GCAC--GTGTG---TC-TTATAAATATAG-A-G-CCCG-AAACCGGAG--CAGT-AATCAGG-A-TA--TT---CG-T-AAA-A--CTTGCTG-TTTTT
gi|23 : T-ACA--GTA-AGCACA--GCAC--A-TTGACCC-TGTGTGCCC-GT--AAAAG-A---A-G-T----A---AA-GTTA-TG-----TTAT-T-CTA------T--A-TT--T-C--AT-T-
gi|24 : AAA---GAACA-TGGCC-----ACAACTTTGTATTAAAATTGTCTT-GTGTTA-----TTTTAA--A---CCTAC-AC---TAAA-A
gi|25 : GA-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCTC-TTTCCTCAC-GT--AAG---A---A-A-T----A---AA-GTTA-TGTT---
gi|3 : CTGG-GT-GCA--GTA-AGCATAA-GCAC--A-TTGGCCC-TGT---------------------------------------TA-TGTT-----AT-C-TTA------T--A-TT--T---------GGT----------AAAAAATGTTT-GT-TCAG-AA-CC-TCT-TG-T-G-TAT-GGAAATGACATTT--GT---TTCA-G-AAAA--T-GCACC-ATATG---TC-TTA-AAATATAG-A-G-TCCG-AAACCGGAG--CAAT--ATCCGG---TT--TC---CT-TAAAA-A--TTTACTG--TTCTGA-CATAATTTTGACAT--A-A----AAATGTTAAAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAA-TTTACTG-GTGTTA-----ATTTGA--A---TGTAC-ACTATTAAA-AAAT---------G-ATT-ATT-----ATTAATG-AAAGTT-----------------TACA-TGGTTT-TGGCCATAGATAA------AACTTTTAAGTTTAT-TG-AAAC-ATA-TC-AAAAAC-AGTAAA--TTTTA-GGAA-----AAT-CCG-GATTACTGCTCTGGCT
gi|3 : T---C-GT-TCAA-GA-CC-TTA--G-T-G-TTT-TGAAATTACTTTT--GT---TTTTTG-AAAA--T-GC-CTTGTGCG---TC-TTGTAAATA---------------GCCAGAG--CAGT-AATCCGG-A-TT--TT---CC-T-AAA-A--TTTACTG-TTTTTGA-TATG--TTTCA-AT--A-A----A---CTT-AAAAGTTTTATCTATGGCC-----AAAACCATGTA--AACTTTCATTA-ATAATAATCATTTTTTA--ATAGTGTAC-AT---TCAA-AT-T---------A-A-C-A---------CCA-G-TAAATTTA--------------ATACA-AAGGTG-TGGCCA-AGTTCATTTTTTAACATT----TTTATGTC-AAAA-TTATGT-CAGAAC-AGTAAAT-TTTTA-AGGA-----AA--CCG-GA-TATTGCTCCGGTTTCG-GACTCTATATTTatttacaagacgcacaaggcattttcaaaaaacaaaagtaatttcaaaacactaaggtcttgaacga
gi|4 : ctgggtgcagtaagcataagcacattggccctgttatgttatcttatatttggtaaaaaatgtttgttcagaacctcttgtgtatggaaatgacatttgtttcagaaaatgcaccatatgtcttaAGGGCTGG-GC-ATG--GTA-AGCAGA--GCAT--A-TCAGCCT-TGTCCGCAC-TT--TTATTTT---C-A-T----A---AA-TTTACTGTT---TT
gi|4 : aa-A-TT--TT---CA-T-AAA----TTTACTG-TTTTTGA-CATAATTTTCACAT--AGA----AAATGTC-AAAAA--TGAACA-TGGAC-----ACACCTTTGTATTAACTTTTACTT-AA---A-----GTTTGA--A---TGTAC-AC---TAAA-GGAT---------G-A-TTA-T-----ATCTATG-AAAGTTTGGTA--------CACATAAA-TGGTTG-TGACCATATAGAA------AAA-------TTTAT-TT-AAAT-TTA-AC-AAAAAC-ATTAAA--TTTCA-TGAA-----AATACTG-GATTACTGCTCCGTTTTTG-GACTCTCTATTTATAtgacataattttcacatagaaaatgtcaaaaatgaacatggacacacctttgtattaacttttacttaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaatttatttaaatttaacaaaaacattaaatttcatgaaaatactggattactgctccgtttttggactctctatttataagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|4 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcacttttTGG-GT-GCG--GTA-AGCATA--GTAC--A-TCGGCCC-TGTCCGAAT-GT--TAA---ATATA-A-T----A---AA-ATTG-AGCT-----AT-G-TTA------T--G-TT--T-T--AT-T-AGTC---GA----GATGATG---T-GT-TCAA-GA-CC-TCT-TG-T-G-TAT-GAAAATGACTTCT--GT---TTCG-G-AAAT--T-GCAC--GTGCG---TC-TTATAAATAGAG-A-G-TCCA-AAAACGGAG--CAGT-AATCCAGTA-TT--TT---CA-T-GAA-A--TTTAATG-TTTTTGT-TA-AATTT--AAAT--A-A----Aagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|5 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcacttttattttcataaatttactgtttttgacataattttcacatagaaaatgtcaaaaatgaacatggacacacctttgtattaacttttacttaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaaAGGGCTTG-GT-ATG--GTA-AGCATA--GCAC--A-TTGGCCA-TGTCCGCAC-GT--CAA---A---T-A-TT---A---AA-GTTT-TGTT---TTAT-C-TTA------C--A-TT--C-T--AT-T-GGTC---CA----AAAATAT---T-GT-TCAA-GA-CC-TTC-TG-T-G-TAT-GGAAATTACTTTT--GT---GTCG-G-AAAA--T-GCAT--GTGCG---TC-TTGTAAATA----A-G-TCCG-AAACCGGAG--CAAT-AAT---A-A-TT--TT---CA-T-CAA-T--TTTACTG-TTTGTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TAAACT-TGGCC-----ACACAATTGTATTAAATTTCACTA-ACTTTA-----TTTTGA--A---TCTAC-AC---TGGA-CGAT---------G-A-T-A-T-----ATTGATG-AAAATTTGATA--------TACATAGG-TGGTT--T-GCCATAGAGAA------ATA-------TCTGT-TG-AAAC-GTA-TC-AAAAAC-AGTCAA--TTTTA-TGAA-----AAT-CCG-GATTATTGCTCCGGTTTCG-GATTCTATATTTACA
gi|6 : AGAGCTGG-GT-GCG--GTA-AGCAGA--GCAC--A-TCGGCCC-TGTCCGCAC-AT--CAA---A---A-AAT----A---AA-GTGA-TGTT-----AT-T-TTA------T--A-TT--T-T--AT-T-GGTC---AA----AAACAAG---T-TT-TCAA-GA-CC-TCC-TG-T-G-TAT-AAAAATGACTTTT--GT---TTCG-G-AATA--T-GCAC--GTGTG---CC-TCATAG--ATAA-A-G-TCCG-AAACCGAAG--CAAT-AATCCGG-G-TT--TT---CA-T-AAA-A--TTTACTA-TTTTTGG-CACAAGTTTGACATCAA-A----AAATGTT-TAAAA--TGAAAT-AGGCC-----ACATCTTTGGATTACATTTTACTT-GTGTTA-----TTTCGA--A---TCTAC-AC---TGAA-AGATG--------G-A-T-A-T-----ACTCATG-AAAGTTTGATA--------TACATATA-TGGTTG-TGGCCGTAGAGAA------AAT-------TTTAT-TG-AAAC-GTA-GC--AAAAC-AGTAAA--TGCTA-TGAATTATCAAT-CAG-AATT
gi|7 : --GT---TTTG-G-AAAC--T-GCAT--GTGCA---TC--------------------CA-AAACTGGAG--CAAT-AAGCCGG-A-TT--TT---C--C-AAA-CTTTTTACTG-tcatt
gi|7 : --TGAACC-TGACC-----ACACCTTTGTATTAAATCTTACTT-GTGTTA-----TTCTGA--A---TCTAC-AC---TAAA-ACAT---------G-A-T-A-TTATATATTCATG-AAAGTTTGGTA--------TGCATACA-TGGTTG-TGGCCACAGAGAA------AAC-------TTTAT-TG-AAAT-GTA-GC-TAAACC-AGTAAA--TTTTA-TGAA-----AAT-TCA-GATTACTGCTCCAGTTTCG-GACTCTATATTTACAaacctgaccacacctttgtattaaatcttacttgtgttattctgaatctacactaaaacatgatattatatattcatgaaagtttggtatgcatacatggttgtggccacagagaaaactttattgaaatgtagctaaaccagtaaattttatgaaaattcagattactgctccagtttcggactctatatttacaagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|7 : gttttggaaactgcatgtgcatccaaaactggagcaataagccggattttccaaactttttacGCAC-TT--AAA---A---A-AAT----A---AAAGTTA-TGTT-----AT-C-TTG------T--A-TT--T-T--AT-T-GATC---TA----AATTATT---T-GT-TTAA-GA-CC-TCC-TG-T-G-TAT-AGATATTACTTTT--GT---TTCA-G-AAAA--T-GCAT--GTTAG---TC-TTGTAAATATAG-A-G-TCCG-AAACTGGAG--CAGT-AATCTGA-A-TT--TT---CA-T-AAA-A--TTTACTG-GTTTagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|8 : gttttggaaactgcatgtgcatccaaaactggagcaataagccggattttccaaactttttactgaacctgaccacacctttgtattaaatcttacttgtgttattctgaatctacactaaaacatgatattatatattcatgaaagtttggtatgcatacatggttgtggccacagagaaaactttattgaaatgtagctGCTGG-AT-ACG--GTA-AGCATA--GCAC--aagtttcaacga
gi|8 : aaataTTTTTA-CATAATTTTGACAT--T-A----AAATGTT-AAAAA-------------------AGATCTTTGTATTAAACTTTTTTTGGTGTTA-----TTTTGA--A---TGTAC-AT---TAAG-AGAT---------G-A-T-G-T-----ATTCATA-AAAGTTTGGTA--------TACGTACA-TGATTG-TGGTCATAGAGAA------AAC-------TTTAC-TG-AAAT-GTA-GC-TAAAAC-GGTAAA--TTTGA-TGAA-----AAT-CCG-GATTACTGCTCtgtttgtttgtttttttctttttacataattttgacattaaaatgttaaaaaagatctttgtattaaactttttttggtgttattttgaatgtacattaagagatgatgtattcataaaagtttggtatacgtacatgattgtggtcatagagaaaactttactgaaatgtagctaaaacggtaaatttgatgaaaatccggattactgctc
gi|9 : aaatagctggatacggtaagcatagcactgtttgtttgtttttttc-TTTGTGA-CATAATT-----A---A-A----AAA-----AAAAA--TGAACT-TCGC------A-ACCTTTGTATCAAATTTTACTT-GTGTTA-----TTTTGA--A----ATGCTAC---CAAA-AGTT---------GAA-T-T-T-----ATTTCTA-AAAG-TTGGTATATCATCGTACATACA-TGATTG-TGGCCATAGCGCA------AA--------TTTAT-TGAAAACAGTAGGC-AAAAACTAGTAAAATTTTTA-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGGTGAGCAATTTATATCCTCAAGGGTTACAGATAAACTTTGCTGCTGGTGGGGCCATTTGTAGTGTACCA
Alignments
lowQualScore : 11 11111111111111111111 2222222 2222222222 11111 11111111111 111111111 11111111 111111 11111111 1 11 11111
lowQualScore : 2 2 33 2 22 33 4 4 2 777 88888888888888888888 2 2 6666666 2 2 999999 33 2 66 3333 2 2 1111111111 0 444 2 2 2 2 2 2 2 2 2 2 1 33 333 2 2 33 2 55 1 444 2 3 11111 5 33 2 4 2 33 444 2 2 3333 2 3 00000000000 3 888888 0 4 44 3 88888 3 3 88888 44 555 0 3 555 3 888888888 3 3 444 99999 3 33333333 3 3 000000 88888888 3 3 7 0 66 4 33 4 11111 4 4 6
lowQualScore : . . .. . .. .. . . . ... .................... . . ....... . . ...... .. . .. .... . . .......... . ... . . . . . . . . . . . .. ... . . .. . .. . ... . . ..... . .. . . . .. ... . . .... . . ........... . ...... . . .. . ..... . . ..... .. ... . . ... . ......... . . ... ..... . ........ . . ...... ........ . . . . .. . .. . ..... . . .
lowQualScore : 9 7 44 4 66 11 7 7 2 111 33333333333333333333 2 2 1111111 4 4 111111 22 4 55 5555 4 4 9999999999 8 111 5 5 5 5 5 5 5 5 5 4 0 22 999 2 2 11 2 33 9 111 4 2 44444 0 44 5 7 4 22 111 4 4 9999 7 6 00000000000 6 777777 7 0 66 3 33333 7 3 33333 66 888 4 3 888 3 222222222 6 6 222 11111 6 22222222 6 6 555555 77777777 6 6 3 9 00 0 55 0 11111 4 4 7
consensus : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT--NAA---A---A-A-T----A---AA-GTTA-TGTT---TTAT-C-TTA------T--A-TT--T-T--AT-T-GGTC---CA----AAAAAAT---T-GT-TCAA-GA-CC-TCC-TG-T-G-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAATATAG-A-G-TCCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAATTTTACTT-GTGTTA-----TTTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TACATACA-TGGTTG-TGGCCATAGAGAA------AAC-------TTTAT-TG-AAAC-GTA-GC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTACTGCTCCGGTTTCG-GACTCTATATTTACA
Reference ( family-943 ) : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT--NAA---A---A-A-T----A---AA-GTTA-TGTT---TTAT-C-TTA------T--A-TT--T-T--AT-T-GGTC---CA----AAAAAAT---T-GT-TCAA-GA-CC-TCC-TG-T-G-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAATATAG-A-G-TCCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAATTTTACTT-GTGTTA-----TTTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TACATACA-TGGTTG-TGGCCATAGAGAA------AAC-------TTTAT-TG-AAAC-GTA-GC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTACTGCTCCGGTTTCG-GACTCTATATTTACA
gi|1 : GG-GT-ACG--GTA-AGCATATAGCAC--A-TCTGCCC-TGTCTGCAT-GT--CAA---A---A-A-TTACCA---AA-GTT--TGTT-----AT-G-TTA------T--A-TT--T-C--AT-T-GGTC---CAGAAAAAAAAAT---G-AT-TCAA-GA-CC-TCC-TGGT-G-TAT-GGAAACGACTCTT--ATATTTTCG-G-AAAA--TTGTAC--GTGTG---TC-TTGTAAAT-----------------CC------------ACCCG--A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAA-----------A-A----------T-AAAAT--TGAACT-TGGCCACAAAACACCTTTGTATTAAA--TTACTT-GCGAAA-----TTTTGA--A---TCTAC-AC---TAAACAGAT---------G-A-T-A-T-----ATCTATGAAAAGTTTGGTT--------TACATACA-TGATTGTTAGCCATTTAGAA------AAC--------TTAT-CT-AAAT-GTC-GC-AA
gi|1 : c-GT-ACG--GTA-AGCATAT-ATATTAA-TCGGCCC--GTCCGAACCGT--TAG---A---ATA-T----A---A---TTG-TGGT---TTAT-C-TTAA-----T--G-TT--T-T--AT-T-GG-C---CA----ATGAATT---TTGTGTCA--GA-CC-TCT-TG---G-TGT-TGAAATGACTTTT--GT---TTTG-G-GAAAACT-GCAC--GTGCG---TC-TTATAAAtgtttcagtacttcgttaatagttttataagacgcacgtgcagttttcccaaaacaaaagtcatttcaacaccaagaggtctgacacaaaattcattggccaataaaacattaagataaaccacaattatattctaacggttcggacgggccgattaatatatatgcttaccgtac
gi|10 : cgggtacggtaagcatatagcacatctgccctgtctgcatgtcaaaaattaccaaagtttgttatgttatatttcattggtccagaaaaaaaaatgattcaagacctcctggtgtatggaaacgactcttatattttcggaaaattgtacgtgtgtcttgtaaatccacccgattttcataaaatttactgtttttgacataaaataaaattgaacttggccacaaaacacctttgtattaaattacttgcgaaattttgaatctacactaaacagatgatatatctatgaaaagtttggtttacatacatgattgttagccatttagaaaacttatctaaatgtcgcaatgtttcagtacttcgttaatagtCAC--A-TCGGCCC-TGTTTGCAC-GT--AAA---A---A--------A---AA-CTTA-CG-----TTAT-C-TTATACATGT--A-TT--T-C--AT-T-GGTCGA-AA----AAAAAAA---T-GC-GCAA-GA-TC-TCT-TG-T-G-TAT-GG
gi|10 : AT-GGAAATTACTTTC--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGT-AATATAG-ATT-TCCG-AAACCGGAG--AAAT-AATCCGG-A-TT--TT---CA-T--AA-A--TTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaattactttcgtttcggaaaatgcacgtgcgtcttgtaatatagatttccgaaaccggagaaataatccggattttcataaattt
gi|11 : cacatcggccctgtttgcacgtaaaaaaaacttacgttatcttatacatgtatttcattggtcgaaaaaaaaaatgcgcaagatctcttgtgtatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTGG-GT-ACG--GTAGAGCACCT-GCAC--AATCGGCCCCTGTCCACAC-GT--AAA---A--------------------------------CAT-C-TT-------C--A-CTAGT-T--AT-T-GGTT---CA----AAAAATT---T-AT-TCAA-GAATC-TCC-TG-T-GGTAC-G-AAATTACTTTTTGGT---GTCG-G-AAAA--T-GCAG--GTG-G---TCTTTGTAAATGTAGTA-GTTCTGTAAACCGTAG--CAAT-AATCCGGAA-TT--TT---CATT-AAACA--TTTACCA-TT
gi|12 : ataaaaattaaG-GTGACGATGTA-AGCACT--GCAC--AATCGGCCCCTGTCCACAC-GT--AAA---A--------------------------------CAT-C-TTA------T--AGTTAAT-T--ATGT-GGTT---CA----AAAAATT---T-AT-TCAA-GA-TCATCC-TG-TGG-TAC-GGAAATTACTTTT--TG---TTCG-G-AAAA--T-GCAC--G-GTGGAATC-TTGTAAATGTAGTA-GTTCTGTAAACCGTAG--CAATGAATCCGG-AGTTCGTT---CA-T-AAC-A--TTTACcct
gi|13 : T---TTAT-C-TGT------T--A-CT--T-TCGAG---GGTT---CACCTTGAAAATT---T-GT-TCAA-GA-CC-TCC-TG-T-A-TAT-GGAAATGAATTTT--GT---TTCG-G-AAAA--T-ACAT--GTGTG---TC-TTATAAATATAG-A-G-TCCG-TAACTGGAA--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTa
gi|14 : taG--GTA-AGCATAA-GCAC--A-TCGGTCC-TGTCCGTAT-GTCAAAA---A---A-A-T----C---AA-GTCA-TG-----TTAT-C-TTA------TACA-TT--TGT--AT-T-GATTGGATA----AAAAAAT---T-GT-TC-A-GA-AT-TCC-TG-T-G-TA--AGAAATctttgctgatggcgagggcattcgtggcataccgacttcctgtaa
gi|15 : tt-AGCATA--GCAC--A-TCGGTCC-TGTCCGTAT-GT--CAA---A---A-A-TC---A---AA-GTCA-TGTTATCTTATACATTG------T--A-TT--T-G--AT-T-GGT----AA----AAAAAAT---T-GT-TCAA-GA-CT-TCC-TG-T-G-TAT-AGAAATTGTTTtgttgtaactagaacctacatatcatatgcgtatatgttaat
gi|16 : T---TTAG-G-AAAA--T-GCAC--ACGTG---TC-ATGTAGATATAG-----TCCG-AAACCGGAA--CAAT-AATCCAA-A-TT--TT---CA-A-AAC-T--TTTACTG-TTTTTGA-CATAG-----------A-A----ATATGTT-AAAAA--TGAATT-TGGCC-----ACACTTTTGTATTACAATTTACaactagacctaacataaatcatatgcggtacatgtaaattat
gi|17 : aGG-GT-ATG--GTA-AGCATA--GCAC--A-TCGGCTC-TGTCCGCAC-AT--CAA---A---A-A-TG---A---AA-GTTA-T-----------T-TCA------T--A-TT--T-T--AT-T-GGTC---------AAAAAAT---T-GT-TCAA-GA-CC-TCC-TG-T-G-TAT-GGAAATTACTTTT--GT---TTCG-GAAAAA--T-GCAC--
gi|18 : AAAA------AAC-------TTTAT-TG-AAAT-GTA-GC-AAAA-C-AGTAGA--TTTCA-TGAA-----AAT-CCG-GATTATTGCTCCGTTTTCG-AACTGTATATTTACA
gi|18 : TGACTTTT--GT---TTCG-G-AAAA--T-GCAC--ATGCA---TT-TTGTAAATATAC-A-G-TTCG-AAAACGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-GAA-A--TCTACTG-TTTTaaatgcatgtgcattttccgaaacaaaagtca
gi|19 : aaaaaactttattgaaatgtagcTGG-GG-ACG--GTA-AGCATA--GTAC--A-TCAGCCC-TGTCCGCAC-GGA-AAA---A---A-A-T----A---AA-GTTA-TG-----TTAT-C-TTA------T--A-TT--T-T--AT-TAGG-----CA----AAAAAAT---
gi|2 : GGGCTGGCGT-ACG--G-A-AGCATA--GCAC--A-TCGCCGT-TGTCTGCAC-GT--CCA---A---A-A-T----ATTAAA-GTTA-CGT------AT-C-CTA------T--A-TT--T-T--GT-A-GGT-----A----AAAAAAT-----GC-CCAAAGA-CC-TCCCTG-T-G-TATTGGAAATCCCCCCC--CC---CCCC-G-GAAA--T-GCAC--GTGTG---TC-T-GTAAATAAAGTA-G-ACCG-AAACCGGAGAGCAA--AATCCGG-A-TT--TTTTTCA-T-AAA-A--TTTGCTGCTTTTTGAACAGTACTGTGACAT--A-ATTTT---TTTT-TAAAA--TGAACT-TGGAC-----ACACCTTTGTATTCAATTATACTT-GTTTTA-----TTTTGAATA---TCTTC-TC---TGAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TAC---CAGTGCT---TGGCCAAAGAGAA------ATC-------TTTTT-TG-AAACGGTAGGCAAAAAAC-AGTAAAT-TTTTATTGAA-----AAT-CAGCGATTATTATTCCGATTTTGAGACTCTAatatcacttggatgtatg
gi|20 : TTAAATTTTATTT-GTGTTA-----TTTTGA--A---TCTAC-TC---TGAA-AGATAATTATATAG-A-T-C-T-----ATTCATG-AAAGTTCGGTA--------TACATACA-CGGTTG-TGGCCATAGAGActggtgcagagacaaagatgttctatggaaca
gi|21 : AATGACTTTT--GT---TTCC-G-AAAA--T-GCAC--GTGTG---TC-TTATAAATATAG-A-G-CCCG-AAACCGGAG--CAGT-AATCAGG-A-TA--TT---CG-T-AAA-A--CTTGCTG-TTTTT
gi|23 : T-ACA--GTA-AGCACA--GCAC--A-TTGACCC-TGTGTGCCC-GT--AAAAG-A---A-G-T----A---AA-GTTA-TG-----TTAT-T-CTA------T--A-TT--T-C--AT-T-
gi|24 : AAA---GAACA-TGGCC-----ACAACTTTGTATTAAAATTGTCTT-GTGTTA-----TTTTAA--A---CCTAC-AC---TAAA-A
gi|25 : GA-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCTC-TTTCCTCAC-GT--AAG---A---A-A-T----A---AA-GTTA-TGTT---
gi|3 : CTGG-GT-GCA--GTA-AGCATAA-GCAC--A-TTGGCCC-TGT---------------------------------------TA-TGTT-----AT-C-TTA------T--A-TT--T---------GGT----------AAAAAATGTTT-GT-TCAG-AA-CC-TCT-TG-T-G-TAT-GGAAATGACATTT--GT---TTCA-G-AAAA--T-GCACC-ATATG---TC-TTA-AAATATAG-A-G-TCCG-AAACCGGAG--CAAT--ATCCGG---TT--TC---CT-TAAAA-A--TTTACTG--TTCTGA-CATAATTTTGACAT--A-A----AAATGTTAAAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAA-TTTACTG-GTGTTA-----ATTTGA--A---TGTAC-ACTATTAAA-AAAT---------G-ATT-ATT-----ATTAATG-AAAGTT-----------------TACA-TGGTTT-TGGCCATAGATAA------AACTTTTAAGTTTAT-TG-AAAC-ATA-TC-AAAAAC-AGTAAA--TTTTA-GGAA-----AAT-CCG-GATTACTGCTCTGGCT
gi|3 : T---C-GT-TCAA-GA-CC-TTA--G-T-G-TTT-TGAAATTACTTTT--GT---TTTTTG-AAAA--T-GC-CTTGTGCG---TC-TTGTAAATA---------------GCCAGAG--CAGT-AATCCGG-A-TT--TT---CC-T-AAA-A--TTTACTG-TTTTTGA-TATG--TTTCA-AT--A-A----A---CTT-AAAAGTTTTATCTATGGCC-----AAAACCATGTA--AACTTTCATTA-ATAATAATCATTTTTTA--ATAGTGTAC-AT---TCAA-AT-T---------A-A-C-A---------CCA-G-TAAATTTA--------------ATACA-AAGGTG-TGGCCA-AGTTCATTTTTTAACATT----TTTATGTC-AAAA-TTATGT-CAGAAC-AGTAAAT-TTTTA-AGGA-----AA--CCG-GA-TATTGCTCCGGTTTCG-GACTCTATATTTatttacaagacgcacaaggcattttcaaaaaacaaaagtaatttcaaaacactaaggtcttgaacga
gi|4 : ctgggtgcagtaagcataagcacattggccctgttatgttatcttatatttggtaaaaaatgtttgttcagaacctcttgtgtatggaaatgacatttgtttcagaaaatgcaccatatgtcttaAGGGCTGG-GC-ATG--GTA-AGCAGA--GCAT--A-TCAGCCT-TGTCCGCAC-TT--TTATTTT---C-A-T----A---AA-TTTACTGTT---TT
gi|4 : aa-A-TT--TT---CA-T-AAA----TTTACTG-TTTTTGA-CATAATTTTCACAT--AGA----AAATGTC-AAAAA--TGAACA-TGGAC-----ACACCTTTGTATTAACTTTTACTT-AA---A-----GTTTGA--A---TGTAC-AC---TAAA-GGAT---------G-A-TTA-T-----ATCTATG-AAAGTTTGGTA--------CACATAAA-TGGTTG-TGACCATATAGAA------AAA-------TTTAT-TT-AAAT-TTA-AC-AAAAAC-ATTAAA--TTTCA-TGAA-----AATACTG-GATTACTGCTCCGTTTTTG-GACTCTCTATTTATAtgacataattttcacatagaaaatgtcaaaaatgaacatggacacacctttgtattaacttttacttaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaatttatttaaatttaacaaaaacattaaatttcatgaaaatactggattactgctccgtttttggactctctatttataagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|4 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcacttttTGG-GT-GCG--GTA-AGCATA--GTAC--A-TCGGCCC-TGTCCGAAT-GT--TAA---ATATA-A-T----A---AA-ATTG-AGCT-----AT-G-TTA------T--G-TT--T-T--AT-T-AGTC---GA----GATGATG---T-GT-TCAA-GA-CC-TCT-TG-T-G-TAT-GAAAATGACTTCT--GT---TTCG-G-AAAT--T-GCAC--GTGCG---TC-TTATAAATAGAG-A-G-TCCA-AAAACGGAG--CAGT-AATCCAGTA-TT--TT---CA-T-GAA-A--TTTAATG-TTTTTGT-TA-AATTT--AAAT--A-A----Aagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|5 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcacttttattttcataaatttactgtttttgacataattttcacatagaaaatgtcaaaaatgaacatggacacacctttgtattaacttttacttaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaaAGGGCTTG-GT-ATG--GTA-AGCATA--GCAC--A-TTGGCCA-TGTCCGCAC-GT--CAA---A---T-A-TT---A---AA-GTTT-TGTT---TTAT-C-TTA------C--A-TT--C-T--AT-T-GGTC---CA----AAAATAT---T-GT-TCAA-GA-CC-TTC-TG-T-G-TAT-GGAAATTACTTTT--GT---GTCG-G-AAAA--T-GCAT--GTGCG---TC-TTGTAAATA----A-G-TCCG-AAACCGGAG--CAAT-AAT---A-A-TT--TT---CA-T-CAA-T--TTTACTG-TTTGTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TAAACT-TGGCC-----ACACAATTGTATTAAATTTCACTA-ACTTTA-----TTTTGA--A---TCTAC-AC---TGGA-CGAT---------G-A-T-A-T-----ATTGATG-AAAATTTGATA--------TACATAGG-TGGTT--T-GCCATAGAGAA------ATA-------TCTGT-TG-AAAC-GTA-TC-AAAAAC-AGTCAA--TTTTA-TGAA-----AAT-CCG-GATTATTGCTCCGGTTTCG-GATTCTATATTTACA
gi|6 : AGAGCTGG-GT-GCG--GTA-AGCAGA--GCAC--A-TCGGCCC-TGTCCGCAC-AT--CAA---A---A-AAT----A---AA-GTGA-TGTT-----AT-T-TTA------T--A-TT--T-T--AT-T-GGTC---AA----AAACAAG---T-TT-TCAA-GA-CC-TCC-TG-T-G-TAT-AAAAATGACTTTT--GT---TTCG-G-AATA--T-GCAC--GTGTG---CC-TCATAG--ATAA-A-G-TCCG-AAACCGAAG--CAAT-AATCCGG-G-TT--TT---CA-T-AAA-A--TTTACTA-TTTTTGG-CACAAGTTTGACATCAA-A----AAATGTT-TAAAA--TGAAAT-AGGCC-----ACATCTTTGGATTACATTTTACTT-GTGTTA-----TTTCGA--A---TCTAC-AC---TGAA-AGATG--------G-A-T-A-T-----ACTCATG-AAAGTTTGATA--------TACATATA-TGGTTG-TGGCCGTAGAGAA------AAT-------TTTAT-TG-AAAC-GTA-GC--AAAAC-AGTAAA--TGCTA-TGAATTATCAAT-CAG-AATT
gi|7 : --GT---TTTG-G-AAAC--T-GCAT--GTGCA---TC--------------------CA-AAACTGGAG--CAAT-AAGCCGG-A-TT--TT---C--C-AAA-CTTTTTACTG-tcatt
gi|7 : --TGAACC-TGACC-----ACACCTTTGTATTAAATCTTACTT-GTGTTA-----TTCTGA--A---TCTAC-AC---TAAA-ACAT---------G-A-T-A-TTATATATTCATG-AAAGTTTGGTA--------TGCATACA-TGGTTG-TGGCCACAGAGAA------AAC-------TTTAT-TG-AAAT-GTA-GC-TAAACC-AGTAAA--TTTTA-TGAA-----AAT-TCA-GATTACTGCTCCAGTTTCG-GACTCTATATTTACAaacctgaccacacctttgtattaaatcttacttgtgttattctgaatctacactaaaacatgatattatatattcatgaaagtttggtatgcatacatggttgtggccacagagaaaactttattgaaatgtagctaaaccagtaaattttatgaaaattcagattactgctccagtttcggactctatatttacaagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|7 : gttttggaaactgcatgtgcatccaaaactggagcaataagccggattttccaaactttttacGCAC-TT--AAA---A---A-AAT----A---AAAGTTA-TGTT-----AT-C-TTG------T--A-TT--T-T--AT-T-GATC---TA----AATTATT---T-GT-TTAA-GA-CC-TCC-TG-T-G-TAT-AGATATTACTTTT--GT---TTCA-G-AAAA--T-GCAT--GTTAG---TC-TTGTAAATATAG-A-G-TCCG-AAACTGGAG--CAGT-AATCTGA-A-TT--TT---CA-T-AAA-A--TTTACTG-GTTTagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|8 : gttttggaaactgcatgtgcatccaaaactggagcaataagccggattttccaaactttttactgaacctgaccacacctttgtattaaatcttacttgtgttattctgaatctacactaaaacatgatattatatattcatgaaagtttggtatgcatacatggttgtggccacagagaaaactttattgaaatgtagctGCTGG-AT-ACG--GTA-AGCATA--GCAC--aagtttcaacga
gi|8 : aaataTTTTTA-CATAATTTTGACAT--T-A----AAATGTT-AAAAA-------------------AGATCTTTGTATTAAACTTTTTTTGGTGTTA-----TTTTGA--A---TGTAC-AT---TAAG-AGAT---------G-A-T-G-T-----ATTCATA-AAAGTTTGGTA--------TACGTACA-TGATTG-TGGTCATAGAGAA------AAC-------TTTAC-TG-AAAT-GTA-GC-TAAAAC-GGTAAA--TTTGA-TGAA-----AAT-CCG-GATTACTGCTCtgtttgtttgtttttttctttttacataattttgacattaaaatgttaaaaaagatctttgtattaaactttttttggtgttattttgaatgtacattaagagatgatgtattcataaaagtttggtatacgtacatgattgtggtcatagagaaaactttactgaaatgtagctaaaacggtaaatttgatgaaaatccggattactgctc
gi|9 : aaatagctggatacggtaagcatagcactgtttgtttgtttttttc-TTTGTGA-CATAATT-----A---A-A----AAA-----AAAAA--TGAACT-TCGC------A-ACCTTTGTATCAAATTTTACTT-GTGTTA-----TTTTGA--A----ATGCTAC---CAAA-AGTT---------GAA-T-T-T-----ATTTCTA-AAAG-TTGGTATATCATCGTACATACA-TGATTG-TGGCCATAGCGCA------AA--------TTTAT-TGAAAACAGTAGGC-AAAAACTAGTAAAATTTTTA-T
blockSeqs : C G AT G T TA A C C CAA AAATATTA A C TTATCTT A A TACATG AC G AG TCG G A TCACCTT GTT T G A A A C . G G T G TG . T A AC . TT C GAA T T TAGT T AG G A G CG TTT T A CTT C A GTTTGACATCA G TTTT A TT A . A G ATCAT AT TAG T TAT . AATTATATA A T AT TATAT . TATCATCG G . TTTTTT CTTTTAAG G A G G AA T AT T TTATC A C A
blockSeqs : . . . . T . A C . AA TTTTCATA . . GTTT . . A . . AA GT . . TGGATA . . . . . . . . . . . T . . . . . . C C . . T TAGT T . . T . . . . . CA . . CTGTGACAT . AT . . . . T . . . . . . . G . . TA . . . . . . CATT . . A T A . T . . . . .
blockSeqs : . . . . A . . . . T ATATAATA . . TTTT . . . . . . T . . CGAAA . . . . . . . . . . . T . . . . . . . T . . T ATT . . . . . . . . . A . . TTTTGACAT . AA . . . . T . . . . . . . . . . A . . . . . . C . . . G A . T . . . . .
blockSeqs : . . . . A . . . . A AGAAGTA . . TTTT . . . . . . C . . CCA . . . . . . . . . . . T . . . . . . . T . . T TAG . . . . . . . . . A . . TTTTCACAT . AA . . . . A . . . . . . . . . . C . . . . . . C . . . . C . . . . . . .
blockSeqs : . . . . . . . . . A AATATA . . TT . . . . . . T . . TCA . . . . . . . . . . . G . . . . . . . T . . T AG . . . . . . . . . A . . TTTTGACAT . AA . . . . T . . . . . . . . . . A . . . . . . A . . . . A . . . . . . .
blockSeqs : . . . . . . . . . A AAATCA . . TT . . . . . . T . . TCA . . . . . . . . . . . T . . . . . . . C . . T AG . . . . . . . . . T . . TTTTGACAT . AA . . . . T . . . . . . . . . . A . . . . . . A . . . . A . . . . . .
blockSeqs : . . . . . . . . . C AAATGA . . TT . . . . . . G . . CGA . . . . . . . . . . . T . . . . . . . T . . A AG . . . . . . . . . A . . TTTCAAT . AA . . . . T . . . . . . . . . . A . . . . . . T . . . . T . . . . . .
blockSeqs : . . . . . . . . . C ATATTA . . TT . . . . . . T . . CCA . . . . . . . . . . . G . . . . . . . T . . T AG . . . . . . . . . A . . TTTAAAT . AA . . . . T . . . . . . . . . . A . . . . . . C . . . . T . . . . . .
blockSeqs : . . . . . . . . . C AAAATA . . TT . . . . . . T . . CAA . . . . . . . . . . . C . . . . . . . T . . T AG . . . . . . . . . A . . TTA . A . . . . T . . . . . . . . . . G . . . . . . C . . . . A . . .
blockSeqs : . . . . . . . . . A AAAATA . . CT . . . . . . T . . CTA . . . . . . . . . . . G . . . . . . . C . . G AG . . . . . . . . . A . . . . . . . C . . . . . . . . . . T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A AAATC . . TT . . . . . . C . . AA . . . . . . . . . . . G . . . . . . . C . . T AG . . . . . . . . . A . . . . T . . . . . . .
blockSeqs : . . . . . . . . . T AAATA . . TT . . . . . . T . . CA . . . . . . . . . . . T . . . . . . . C . . T AG . . . . . . . . . A . .
blockSeqs : . . . . . . . . . T AAATA . . C . . . . . . T . . C . . . . . . . . . . . G . . . . . . . T . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . C AAA . . C . . . . . . T . . A . . . . . . . . . . . T . . . . . . . C . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . C A . . T . . . . . . T . . . . . . . . . . . . . . G . . . . . . . A . . . . . . . . . . . . . A
blockSeqs : . . . . . . A A . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons : ** AAATA*************** CA******** *** AG*** TTTTGACAT** AA**** *****
originalCons : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT--NAA---A---A-A-T----A---AA-GTTA-TGTT---TTAT-C-TTA------T--A-TT--T-T--AT-T-GGTC---CA----AAAAAAT---T-GT-TCAA-GA-CC-TCC-TG-T-G-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAATATAG-A-G-TCCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAATTTTACTT-GTGTTA-----TTTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TACATACA-TGGTTG-TGGCCATAGAGAA------AAC-------TTTAT-TG-AAAC-GTA-GC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTACTGCTCCGGTTTCG-GACTCTATATTTACA
finalCons : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT--NAAAAATA---------------AA-GTTA-TGTT---TTAT-C-TTA------T--A-TT--T-T--AT-T-GGTCA--------AAAAAAT---T-GT-TCAA-GA-CC-TCC-TG-T-G-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAATATAGAG---TCCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-AAA----ATGTT-AAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAATTTTACTT-GTGTTA-----TTTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TACATACA-TGGTTG-TGGCCATAGAGAA------AAC-------TTTAT-TG-AAAC-GTA-GC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTACTGCTCCGGTTTCG-GACTCTATATTTACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGGTGAGCAATTTATATCCTCAAGGGTTACAGATAAACTTTGCTGCTGGTGGGGCCATTTGTAGTGTACCA
Alignments
lowQualScore : 11 11111111111111111111 2222222 1111111111 11111 11111111111 111111111 11111111 111111 11111111 1 11 11111
lowQualScore : 2 2 33 2 22 33 4 4 2 999 66666666666666666666 2 2 8888888 55 2 999999 33 2 66 44444 2 66666 2 7777777777 2 2 77777 2 2 2 2 2 2 2 2 2 2 2 1 33 333 2 2 33 2 55 1 444 2 3 11111 5 33 2 4 2 33 444 2 2 3333 2 3 00000000000 3 888888 0 4 44 3 88888 3 3 88888 44 555 0 3 555 3 888888888 3 3 444 99999 3 33333333 3 3 000000 88888888 3 3 7 0 66 4 33 4 11111 4 4 6
lowQualScore : . . .. . .. .. . . . ... .................... . . ....... .. . ...... .. . .. ..... . ..... . .......... . . ..... . . . . . . . . . . . . .. ... . . .. . .. . ... . . ..... . .. . . . .. ... . . .... . . ........... . ...... . . .. . ..... . . ..... .. ... . . ... . ......... . . ... ..... . ........ . . ...... ........ . . . . .. . .. . ..... . . .
lowQualScore : 9 7 44 4 66 11 7 7 2 333 11111111111111111111 2 2 5555555 66 4 111111 22 4 55 44444 4 22222 5 2222222222 4 4 00000 4 4 4 4 4 4 4 4 4 4 2 0 11 777 2 2 11 2 33 9 111 4 2 44444 0 44 5 7 4 22 111 4 4 9999 7 6 00000000000 6 777777 7 0 66 3 33333 7 3 33333 66 888 4 3 888 3 222222222 6 6 222 11111 6 22222222 6 6 555555 77777777 6 6 3 9 00 0 55 0 11111 4 4 7
consensus : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT--NAA---A---A-A-T----A---AA-GTTA-TGTT---TTAT--C-TTA------T--A-TT--T-T---AT-TG-----G-T----C-----AAAAA-A-AT---T-GT-TCA-A-GA-C-C-TCC-TG-T-G-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAATATAG-A-G-TCCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAATTTTACTT-GTGTTA-----TTTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TACATACA-TGGTTG-TGGCCATAGAGAA------AAC-------TTTAT-TG-AAAC-GTA-GC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTACTGCTCCGGTTTCG-GACTCTATATTTACA
Reference ( family-943 ) : AGGGCTGG-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCCC-TGTCCGCAC-GT--NAA---A---A-A-T----A---AA-GTTA-TGTT---TTAT--C-TTA------T--A-TT--T-T---AT-TG-----G-T----C-----AAAAA-A-AT---T-GT-TCA-A-GA-C-C-TCC-TG-T-G-TAT-GGAAATNACTTTT--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGTAAATATAG-A-G-TCCG-AAACCGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAATTTTACTT-GTGTTA-----TTTTGA--A---TCTAC-AC---TAAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TACATACA-TGGTTG-TGGCCATAGAGAA------AAC-------TTTAT-TG-AAAC-GTA-GC-AAAAAC-AGTAAA--TTTTA-TGAA-----AAT-CCG-GATTACTGCTCCGGTTTCG-GACTCTATATTTACA
gi|1 : GG-GT-ACG--GTA-AGCATATAGCAC--A-TCTGCCC-TGTCTGCAT-GT--CAA---A---A-A-TTACCA---AA-GTT--TGTT-----AT--G-TTA------T--A-TT--T-C---AT-TG-----G-T----CCAGAAAAAAA-A-AT---G-AT-TCA-A-GA-C-C-TCC-TGGT-G-TAT-GGAAACGACTCTT--ATATTTTCG-G-AAAA--TTGTAC--GTGTG---TC-TTGTAAAT-----------------CC------------ACCCG--A-TT--TT---CA-T-AAA-A--TTTACTG-TTTTTGA-CATAA-----------A-A----------T-AAAAT--TGAACT-TGGCCACAAAACACCTTTGTATTAAA--TTACTT-GCGAAA-----TTTTGA--A---TCTAC-AC---TAAACAGAT---------G-A-T-A-T-----ATCTATGAAAAGTTTGGTT--------TACATACA-TGATTGTTAGCCATTTAGAA------AAC--------TTAT-CT-AAAT-GTC-GC-AA
gi|1 : c-GT-ACG--GTA-AGCATAT-ATATTAA-TCGGCCC--GTCCGAACCGT--TAG---A---ATA-T----A---A---TTG-TGGT---TTAT--C-TTAA-----T--G-TT--T-T---AT-TG-----G-C----C-----AATGA-A-TT---TTGTGTCA---GA-C-C-TCT-TG---G-TGT-TGAAATGACTTTT--GT---TTTG-G-GAAAACT-GCAC--GTGCG---TC-TTATAAAtgtttcagtacttcgttaatagttttataagacgcacgtgcagttttcccaaaacaaaagtcatttcaacaccaagaggtctgacacaaaattcattggccaataaaacattaagataaaccacaattatattctaacggttcggacgggccgattaatatatatgcttaccgtac
gi|10 : cgggtacggtaagcatatagcacatctgccctgtctgcatgtcaaaaattaccaaagtttgttatgttatatttcattggtccagaaaaaaaaatgattcaagacctcctggtgtatggaaacgactcttatattttcggaaaattgtacgtgtgtcttgtaaatccacccgattttcataaaatttactgtttttgacataaaataaaattgaacttggccacaaaacacctttgtattaaattacttgcgaaattttgaatctacactaaacagatgatatatctatgaaaagtttggtttacatacatgattgttagccatttagaaaacttatctaaatgtcgcaatgtttcagtacttcgttaatagtCAC--A-TCGGCCC-TGTTTGCAC-GT--AAA---A---A--------A---AA-CTTA-CG-----TTAT--C-TTATACATGT--A-TT--T-C---AT-TG-----G-T----CGAA--AAAAA-A-AA---T-GC-GCA-A-GA-T-C-TCT-TG-T-G-TAT-GG
gi|10 : AT-GGAAATTACTTTC--GT---TTCG-G-AAAA--T-GCAC--GTGCG---TC-TTGT-AATATAG-ATT-TCCG-AAACCGGAG--AAAT-AATCCGG-A-TT--TT---CA-T--AA-A--TTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaattactttcgtttcggaaaatgcacgtgcgtcttgtaatatagatttccgaaaccggagaaataatccggattttcataaattt
gi|11 : cacatcggccctgtttgcacgtaaaaaaaacttacgttatcttatacatgtatttcattggtcgaaaaaaaaaatgcgcaagatctcttgtgtatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTGG-GT-ACG--GTAGAGCACCT-GCAC--AATCGGCCCCTGTCCACAC-GT--AAA---A--------------------------------CAT--C-TT-------C--A-CTAGT-T---AT-TG-----G-TT---C-----AAAAA-A-TT---T-AT-TCA-A-GAAT-C-TCC-TG-T-GGTAC-G-AAATTACTTTTTGGT---GTCG-G-AAAA--T-GCAG--GTG-G---TCTTTGTAAATGTAGTA-GTTCTGTAAACCGTAG--CAAT-AATCCGGAA-TT--TT---CATT-AAACA--TTTACCA-TT
gi|12 : ataaaaattaaG-GTGACGATGTA-AGCACT--GCAC--AATCGGCCCCTGTCCACAC-GT--AAA---A--------------------------------CAT--C-TTA------T--AGTTAAT-T---ATGTG-----GTT----C-----AAAAA-A-TT---T-AT-TCA-A-GA-T-CATCC-TG-TGG-TAC-GGAAATTACTTTT--TG---TTCG-G-AAAA--T-GCAC--G-GTGGAATC-TTGTAAATGTAGTA-GTTCTGTAAACCGTAG--CAATGAATCCGG-AGTTCGTT---CA-T-AAC-A--TTTACcct
gi|13 : AAA-A-TT---T-GT-TCA-A-GA-C-C-TCC-TG-T-A-TAT-GGAAATGAATTTT--GT---TTCG-G-AAAA--T-ACAT--GTGTG---TC-TTATAAATATAG-A-G-TCCG-TAACTGGAA--CAAT-AATCCGG-A-TT--TT---CA-T-AAA-A--TTTa
gi|14 : taG--GTA-AGCATAA-GCAC--A-TCGGTCC-TGTCCGTAT-GTCAAAA---A---A-A-T----C---AA-GTCA-TG-----TTAT--C-TTA------TACA-TT--TGT---AT-TG-----A-TTGGAT-----AAAAA-A-AT---T-GT-TC--A-GA-A-T-TCC-TG-T-G-TA--AGAAATcaaggtgaaccctcgaaagtaacagataaactttgctgatggcgagggcattcgtggcataccgacttcctgtaa
gi|15 : tt-AGCATA--GCAC--A-TCGGTCC-TGTCCGTAT-GT--CAA---A---A-A-TC---A---AA-GTCA-TGTTATCTTATA-CATTG------T--A-TT--T-G---AT-TG-----G-T----A-----AAAAA-A-AT---T-GT-TCA-A-GA-C-T-TCC-TG-T-G-TAT-AGAAATTGTTTtgttgtaactagaacctacatatcatatgcgtatatgttaat
gi|16 : T---TTAG-G-AAAA--T-GCAC--ACGTG---TC-ATGTAGATATAG-----TCCG-AAACCGGAA--CAAT-AATCCAA-A-TT--TT---CA-A-AAC-T--TTTACTG-TTTTTGA-CATAG-----------A-A----ATATGTT-AAAAA--TGAATT-TGGCC-----ACACTTTTGTATTACAATTTACaactagacctaacataaatcatatgcggtacatgtaaattat
gi|17 : aGG-GT-ATG--GTA-AGCATA--GCAC--A-TCGGCTC-TGTCCGCAC-AT--CAA---A---A-A-TG---A---AA-GTTA-T------------T-TCA------T--A-TT--T-T---AT-TG-----G-T----C-----AAAA--A-AT---T-GT-TCA-A-GA-C-C-TCC-TG-T-G-TAT-GGAAATTACTTTT--GT---TTCG-GAAAAA--T-GCAC--
gi|18 : AAAA------AAC-------TTTAT-TG-AAAT-GTA-GC-AAAA-C-AGTAGA--TTTCA-TGAA-----AAT-CCG-GATTATTGCTCCGTTTTCG-AACTGTATATTTACA
gi|18 : TGACTTTT--GT---TTCG-G-AAAA--T-GCAC--ATGCA---TT-TTGTAAATATAC-A-G-TTCG-AAAACGGAG--CAAT-AATCCGG-A-TT--TT---CA-T-GAA-A--TCTACTG-TTTTaaatgcatgtgcattttccgaaacaaaagtca
gi|19 : aaaaaactttattgaaatgtagcTGG-GG-ACG--GTA-AGCATA--GTAC--A-TCAGCCC-TGTCCGCAC-GGA-AAA---A---A-A-T----A---AA-GTTA-TG-----TTAT--C-TTA------T--A-TT--T-T---AT-TA-----G-G----C-----AAAAA-A-AT---
gi|2 : GGGCTGGCGT-ACG--G-A-AGCATA--GCAC--A-TCGCCGT-TGTCTGCAC-GT--CCA---A---A-A-T----ATTAAA-GTTA-CGT------AT--C-CTA------T--A-TT--T-T---GT-AG-----G-T----------AAAAA-A-AT-----GC-CCA-AAGA-C-C-TCCCTG-T-G-TATTGGAAATCCCCCCC--CC---CCCC-G-GAAA--T-GCAC--GTGTG---TC-T-GTAAATAAAGTA-G-ACCG-AAACCGGAGAGCAA--AATCCGG-A-TT--TTTTTCA-T-AAA-A--TTTGCTGCTTTTTGAACAGTACTGTGACAT--A-ATTTT---TTTT-TAAAA--TGAACT-TGGAC-----ACACCTTTGTATTCAATTATACTT-GTTTTA-----TTTTGAATA---TCTTC-TC---TGAA-AGAT---------G-A-T-A-T-----ATTCATG-AAAGTTTGGTA--------TAC---CAGTGCT---TGGCCAAAGAGAA------ATC-------TTTTT-TG-AAACGGTAGGCAAAAAAC-AGTAAAT-TTTTATTGAA-----AAT-CAGCGATTATTATTCCGATTTTGAGACTCTAatatcacttggatgtatg
gi|20 : TTAAATTTTATTT-GTGTTA-----TTTTGA--A---TCTAC-TC---TGAA-AGATAATTATATAG-A-T-C-T-----ATTCATG-AAAGTTCGGTA--------TACATACA-CGGTTG-TGGCCATAGAGActggtgcagagacaaagatgttctatggaaca
gi|21 : AATGACTTTT--GT---TTCC-G-AAAA--T-GCAC--GTGTG---TC-TTATAAATATAG-A-G-CCCG-AAACCGGAG--CAGT-AATCAGG-A-TA--TT---CG-T-AAA-A--CTTGCTG-TTTTT
gi|23 : T-ACA--GTA-AGCACA--GCAC--A-TTGACCC-TGTGTGCCC-GT--AAAAG-A---A-G-T----A---AA-GTTA-TG-----TTAT--T-CTA------T--A-TT--T-C---AT-T
gi|24 : AAA---GAACA-TGGCC-----ACAACTTTGTATTAAAATTGTCTT-GTGTTA-----TTTTAA--A---CCTAC-AC---TAAA-A
gi|25 : GA-GT-ACG--GTA-AGCATA--GCAC--A-TCGGCTC-TTTCCTCAC-GT--AAG---A---A-A-T----A---AA-GTTA-TGTT---
gi|3 : CTGG-GT-GCA--GTA-AGCATAA-GCAC--A-TTGGCCC-TGT---------------------------------------TA-TGTT-----AT--C-TTA------T--A-TT--T---------G-----G-T-----------AAAA-A-ATGTTT-GT-TCA-G-AA-C-C-TCT-TG-T-G-TAT-GGAAATGACATTT--GT---TTCA-G-AAAA--T-GCACC-ATATG---TC-TTA-AAATATAG-A-G-TCCG-AAACCGGAG--CAAT--ATCCGG---TT--TC---CT-TAAAA-A--TTTACTG--TTCTGA-CATAATTTTGACAT--A-A----AAATGTTAAAAAA--TGAACT-TGGCC-----ACACCTTTGTATTAAA-TTTACTG-GTGTTA-----ATTTGA--A---TGTAC-ACTATTAAA-AAAT---------G-ATT-ATT-----ATTAATG-AAAGTT-----------------TACA-TGGTTT-TGGCCATAGATAA------AACTTTTAAGTTTAT-TG-AAAC-ATA-TC-AAAAAC-AGTAAA--TTTTA-GGAA-----AAT-CCG-GATTACTGCTCTGGCT
gi|3 : T---C-GT-TCA-A-GA-C-C-TTA--G-T-G-TTT-TGAAATTACTTTT--GT---TTTTTG-AAAA--T-GC-CTTGTGCG---TC-TTGTAAATA---------------GCCAGAG--CAGT-AATCCGG-A-TT--TT---CC-T-AAA-A--TTTACTG-TTTTTGA-TATG--TTTCA-AT--A-A----A---CTT-AAAAGTTTTATCTATGGCC-----AAAACCATGTA--AACTTTCATTA-ATAATAATCATTTTTTA--ATAGTGTAC-AT---TCAA-AT-T---------A-A-C-A---------CCA-G-TAAATTTA--------------ATACA-AAGGTG-TGGCCA-AGTTCATTTTTTAACATT----TTTATGTC-AAAA-TTATGT-CAGAAC-AGTAAAT-TTTTA-AGGA-----AA--CCG-GA-TATTGCTCCGGTTTCG-GACTCTATATTTatttacaagacgcacaaggcattttcaaaaaacaaaagtaatttcaaaacactaaggtcttgaacga
gi|4 : ctgggtgcagtaagcataagcacattggccctgttatgttatcttatatttggtaaaaaatgtttgttcagaacctcttgtgtatggaaatgacatttgtttcagaaaatgcaccatatgtcttaAGGGCTGG-GC-ATG--GTA-AGCAGA--GCAT--A-TCAGCCT-TGTCCGCAC-TT--TTATTTT---C-A-T----A---AA-TTTACTGTT---TT-TGAC-ATA---------A-TT--T-TCACAT-AGAAAATG-T----C-----AAAAA--------T-GA-ACATG-GA-CAC-ACC-TT-T-G-TAT------TAACTTTT--AC---TT
gi|4 : aa-A-TT--TT---CA-T-AAA----TTTACTG-TTTTTGA-CATAATTTTCACAT--AGA----AAATGTC-AAAAA--TGAACA-TGGAC-----ACACCTTTGTATTAACTTTTACTT-AA---A-----GTTTGA--A---TGTAC-AC---TAAA-GGAT---------G-A-TTA-T-----ATCTATG-AAAGTTTGGTA--------CACATAAA-TGGTTG-TGACCATATAGAA------AAA-------TTTAT-TT-AAAT-TTA-AC-AAAAAC-ATTAAA--TTTCA-TGAA-----AATACTG-GATTACTGCTCCGTTTTTG-GACTCTCTATTTATAaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaatttatttaaatttaacaaaaacattaaatttcatgaaaatactggattactgctccgtttttggactctctatttataagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|4 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcacttttTGG-GT-GCG--GTA-AGCATA--GTAC--A-TCGGCCC-TGTCCGAAT-GT--TAA---ATATA-A-T----A---AA-ATTG-AGCT-----AT--G-TTA------T--G-TT--T-T---AT-TA-----G-T----C-----GAGAT-G-ATG--T-GT-TCA-A-GA-C-C-TCT-TG-T-G-TAT-GAAAATGACTTCT--GT---TTCG-G-AAAT--T-GCAC--GTGCG---TC-TTATAAATAGAG-A-G-TCCA-AAAACGGAG--CAGT-AATCCAGTA-TT--TT---CA-T-GAA-A--TTTAATG-TTTTTGT-TA-AATTT--AAAT--A-A----Aagacgcacgtgcaatttccgaaacagaagtcattttcatacacaagaggtcttgaacacatcatctcgactaataaaacataacatagctcaattttattatatttaacattcggacagggccgatgtactatgcttaccgcaccca
gi|5 : aaagggctgggcatggtaagcagagcatatcagccttgtccgcacttttattttcataaatttactgtttttgacataattttcacatagaaaatgtcaaaaatgaacatggacacacctttgtattaacttttacttaaagtttgaatgtacactaaaggatgattatatctatgaaagtttggtacacataaatggttgtgaccatatagaaaaaAGGGCTTG-GT-ATG--GTA-AGCATA--GCAC--A-TTGGCCA-TGTCCGCAC-GT--CAA---A---T-A-TT---A---AA-GTTT-TGTT---TTAT--C-TTA------C--A-TT--C-T---AT-TG-----G-T----C-----CAAAA-ATAT---T-GT-TCA-A-GA-C-C-TTC-TG-T-G-TAT-GGAAATTACTTTT--GT---GTCG-G-AAAA--T-GCAT--GTGCG---TC-TTGTAAATA----A-G-TCCG-AAACCGGAG--CAAT-AAT---A-A-TT--TT---CA-T-CAA-T--TTTACTG-TTTGTGA-CATAATTTTGACAT--A-A----AAATGTT-AAAAA--TAAACT-TGGCC-----ACACAATTGTATTAAATTTCACTA-ACTTTA-----TTTTGA--A---TCTAC-AC---TGGA-CGAT---------G-A-T-A-T-----ATTGATG-AAAATTTGATA--------TACATAGG-TGGTT--T-GCCATAGAGAA------ATA-------TCTGT-TG-AAAC-GTA-TC-AAAAAC-AGTCAA--TTTTA-TGAA-----AAT-CCG-GATTATTGCTCCGGTTTCG-GATTCTATATTTACA
gi|6 : AGAGCTGG-GT-GCG--GTA-AGCAGA--GCAC--A-TCGGCCC-TGTCCGCAC-ATC-AAA---A---A-A-T----A---AA-GTGA-TG-----TTAT--T-TTA------T--A-TT--T-T---AT-TG-----G-T----C-----AAAAACA-AG---T-TT-TCA-A-GA-C-C-TCC-TG-T-G-TAT-AAAAATGACTTTT--GT---TTCG-G-AATA--T-GCAC--GTGTG---CC-TCATAG--ATAA-A-G-TCCG-AAACCGAAG--CAAT-AATCCGG-G-TT--TT---CA-T-AAA-A--TTTACTA-TTTTTGG-CACAAGTTTGACATCAA-A----AAATGTT-TAAAA--TGAAAT-AGGCC-----ACATCTTTGGATTACATTTTACTT-GTGTTA-----TTTCGA--A---TCTAC-AC---TGAA-AGATG--------G-A-T-A-T-----ACTCATG-AAAGTTTGATA--------TACATATA-TGGTTG-TGGCCGTAGAGAA------AAT-------TTTAT-TG-AAAC-GTA-GC--AAAAC-AGTAAA--TGCTA-TGAATTATCAAT-CAG-AATT
gi|7 : --GT---TTTG-G-AAAC--T-GCAT--GTGCA---TC--------------------CA-AAACTGGAG--CAAT-AAGCCGG-A-TT--TT---C--C-AAA-CTTTTTACTG-tcatt
gi|7 : --TGAACC-TGACC-----ACACCTTTGTATTAAATCTTACTT-GTGTTA-----TTCTGA--A---TCTAC-AC---TAAA-ACAT---------G-A-T-A-TTATATATTCATG-AAAGTTTGGTA--------TGCATACA-TGGTTG-TGGCCACAGAGAA------AAC-------TTTAT-TG-AAAT-GTA-GC-TAAACC-AGTAAA--TTTTA-TGAA-----AAT-TCA-GATTACTGCTCCAGTTTCG-GACTCTATATTTACAaacctgaccacacctttgtattaaatcttacttgtgttattctgaatctacactaaaacatgatattatatattcatgaaagtttggtatgcatacatggttgtggccacagagaaaactttattgaaatgtagctaaaccagtaaattttatgaaaattcagattactgctccagtttcggactctatatttacaagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|7 : gttttggaaactgcatgtgcatccaaaactggagcaataagccggattttccaaactttttacGCAC-TT--AAA---A---A-AAT----A---AAAGTTA-TGTT-----AT--C-TTG------T--A-TT--T-T---AT-TG-----A-T----C-----TAAAT-T-AT---TTGT-TTA-A-GA-C-C-TCC-TG-T-G-TAT-AGATATTACTTTT--GT---TTCA-G-AAAA--T-GCAT--GTTAG---TC-TTGTAAATATAG-A-G-TCCG-AAACTGGAG--CAGT-AATCTGA-A-TT--TT---CA-T-AAA-A--TTTACTG-GTTTagactaacatgcattttctgaaacaaaagtaatatctatacacaggaggtcttaaacaaataatttagatcaataaaatacaagataacataacttttatttttttaagtgcaagtttcaacga
gi|8 : gttttggaaactgcatgtgcatccaaaactggagcaataagccggattttccaaactttttactgaacctgaccacacctttgtattaaatcttacttgtgttattctgaatctacactaaaacatgatattatatattcatgaaagtttggtatgcatacatggttgtggccacagagaaaactttattgaaatgtagctGCTGG-AT-ACG--GTA-AGCATA--GCAC--aagtttcaacga
gi|8 : aaataTTTTTA-CATAATTTTGACAT--T-A----AAATGTT-AAAAA-------------------AGATCTTTGTATTAAACTTTTTTTGGTGTTA-----TTTTGA--A---TGTAC-AT---TAAG-AGAT---------G-A-T-G-T-----ATTCATA-AAAGTTTGGTA--------TACGTACA-TGATTG-TGGTCATAGAGAA------AAC-------TTTAC-TG-AAAT-GTA-GC-TAAAAC-GGTAAA--TTTGA-TGAA-----AAT-CCG-GATTACTGCTCtgtttgtttgtttttttctttttacataattttgacattaaaatgttaaaaaagatctttgtattaaactttttttggtgttattttgaatgtacattaagagatgatgtattcataaaagtttggtatacgtacatgattgtggtcatagagaaaactttactgaaatgtagctaaaacggtaaatttgatgaaaatccggattactgctc
gi|9 : aaatagctggatacggtaagcatagcactgtttgtttgtttttttc-TTTGTGA-CATAATT-----A---A-A----AAA-----AAAAA--TGAACT-TCGC------A-ACCTTTGTATCAAATTTTACTT-GTGTTA-----TTTTGA--A----ATGCTAC---CAAA-AGTT---------GAA-T-T-T-----ATTTCTA-AAAG-TTGGTATATCATCGTACATACA-TGATTG-TGGCCATAGCGCA------AA--------TTTAT-TGAAAACAGTAGGC-AAAAACTAGTAAAATTTTTA-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGGTGAGCAATTTATATCCTCAAGGGTTACAGATAAACTTTGCTGCTGGTGGGGCCATTTGTAGTGTACCA