lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222222222222222222222222222222222222222222222222222222222222
lowQualScore : 22 4 777777777777777 6666666 1 55 55 6666 4 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 11 8888888888888888888888888 4 4 4 1 4 44 4 99999999 444444 55 2 1 55555555 1 1 1 1 22 2222 1 2222 22 2 88888888888888888 444444444444 2 33 2 1 2 1 99999999999999999999999 1 22222 1 11 1111 22222222 22222222 1111111 2222 1 11 333333333333333333333333333333333333333333333333333333333333 22222 222 11 1 666666666666666666666666666666666 11 111111 2 1111 11 555555555555
lowQualScore : 6 6 6 6 33 6 0 6 999999999999999 3333333 6 7 55 55 6 3333 6 0 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 0 22 8888888888888888888888888 0 0 6 0 5 6 6 0 6 66 0 88888888 333333 6 6 55 0 2 22222222 5 5 5 6 5 6 11 6 4444 3 6 1 4444 66 0 88888888888888888 2 777777777777 0 00 0 6 2 7 0 3 00000000000000000000000 3 33333 3 8 0 11 7777 99999999 8 99999999 44 6666666 1111 0 33 2 333333333333333333333333333333333333333333333333333333333333 44444 5 5 8 66 5 0 6 000 8 6 11 9 5 4 111111111111111111111111111111111 77 7 777777 4 4 66 4 4 66 4 777 4 66 6 0 0000 5 0 5 11 777777777777 6
lowQualScore : . . . . .. . . . ............... ....... . . .. .. . .... . . . .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. . . .. ......................... . . . . . . . . . .. . ........ ...... . . .. . . ........ . . . . . . .. . .... . . . .... .. . ................. . ............ . .. . . . . . . ....................... . ..... . . . .. .... ........ . ........ .. ....... .... . .. . ............................................................ ..... . . . .. . . . ... . . .. . . . ................................. .. . ...... . . .. . . .. . ... . .. . . .... . . . .. ............ .
lowQualScore : 0 0 0 0 00 0 0 0 000000000000000 0000000 0 0 00 00 0 0000 0 0 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 00 0000000000000000000000000 0 0 0 0 0 0 0 0 0 00 0 00000000 000000 0 0 00 0 0 33333333 0 0 0 0 0 0 55 0 5555 0 0 5 0000 00 0 00000000000000000 5 000000000000 0 00 0 0 5 0 0 3 77777777777777777777777 3 33333 3 0 8 00 0000 00000000 0 00000000 00 8888888 2222 0 88 0 555555555555555555555555555555555555555555555555555555555555 44444 0 0 4 99 0 2 7 888 0 7 00 5 7 3 666666666666666666666666666666666 66 9 555555 4 4 11 4 4 11 4 888 4 99 4 7 6666 7 1 7 44 999999999999 7
consensus : NTGGCTCCAGCCGACAAAGCTGGTAACAATATTGGTTTTTG-CTGT--AAGGCTTCATTATACAACTGCATTTTAAACGAACTTGGG--TACTTCACCACATTTGGTATTTCCTACTTACACTTCCATGC--TCT--TTTCAAAAGAC--AATTC-TCAAAATAATGCTTTCAGTTTTAAACACATTAATATCACAGTC--AATGGGAT-GGGAAGAATAT-AACNACCGTACCTNGATACTNGATTCCAAANCTTCNCAAAANCCCTTACAA-ACAAAGATATATC-GCTGGTTCAAGTAATGTGTTCTACCTAGCCNCTGTCCCTGCTNCTCGCNAGAAAATATTGANTAGCT-TCAATAGA-CCACAACTTACAAGAAGTANCTGTGNCGCNACATATGCCAGGAAGTGGTGGTNAATCAAATGTGGATTAACAAAGATTCCANAGAATTTNTGGTGAATGGAATTCCAG------AGACCTTCCCNNATACCATACAACATTCAAAAACAACCGTATGACTTTTCNACACTTTGCACTAGTNACGGACNGCCATCCCNCACGNNNAATCAAAGGNNTAGNCTCTGTTGACATCATAGAGNAGTTGCTTCCTTAACAAAAATGGAAAAAGGAAATATACTTATTCCATGATCAAGCCATT--CAAA-AAAAT---CATTTTGTTA-AAGTTCCACTCTGATT-CTCAAACAAGTACTCTGAAGTTGATGT-AACAGCAATCCTCAA-----TTGGACAATACTTTTTGTATTTGGCC---AATAGGTC----TTTCCAGACAGTCTTCTGGAATTCCAGT-GGCACGAATTATGTTACCACCCTTGGCGTGGCCTTCACAGCCTTATT---ATAGGTATACAGAACGAGA---TGTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCTTA-TTATAGGTATACAGAACGAGATGT-TTATCATAATTACTCAATCATAATTTTCACCAATTATGTCCATTT-ATATATCCTGACGAACCCGACAATAAAAAACACCACAGAATCATGACAGATGTGCTTTGATATTCTGGATATTT-ACT--A-ATTGACTC-AATG-CAGACTGACAACTGCAAATTATATGGATAAACGTGA------T-ACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCACTATCGCCTNGCGTANGATGNGTNCANTCTCTCAAGTCTGATTCGCAATACGNAANGGCTGCCATNCGTGTGANNACGTTTGTATAAAGTCGAGNCCAAGCTACTAACNAAAAAGTTGATGTTTGCAGGGTTA-TAACGAAT---------CATCGTTTAA--T-ATCAA-TTCGCAAAT-TCT-AC-GGTCGC-TATAATGAC--CTTG----TTTGC--------GA-TTA--------CAAATTATCAC-TA--AGTC----AT-ATGT--TGACTGATTT-------------TATT-G--T-----CAT-----TTCC----------------GTACT-A--GAT-TTG-ACGACG--GG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTG-CTTCGCT-TTCGTCGAAGGTCC-GTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG--TTTT-TGGG----ACTATGAT-TACGTT-T-AATACN-TTG-TT--ACTTCGCC-ATTTTA
Reference ( gi|1 ) : CTAGTTCCAGCTGATAAAGCAAGTAACAACATT-GTCTTTGTTTGTAAAAGTCACTATTATAC--TTGTCTTTTAAATGAACTAGGGTTTACTTCA--ACATCTGGGA-ATCCTACTTATAC-TCCAAGCAATCTGACT---AAAGATGAAATTCTTCAAAATCAT-CTTTCTGTTTTGAATACTTTCA----ACATTCCGAA--GAATCAGGATCAATTTGAATTACCATACCTT--TACTGGATTCCGAAATTGCATAAGAATCCTTACAA-ACAAAGATGCATC-GCTGGTTCCAGGAA-GTGCTCTACCAAGCGTCTATCCTTAATACTAACT--AAACTA-CGAATAGCTGTTAA-AGAGTC---ACTT-C-AGAGATA-CTATTCCACTACATATTCCA-GAAGTGGT-GTCAATCAGATGTGGATTCTCAAAAACTCCAAAGAGGTTATA--GAA---AACTCCAGTTCACGAGATTTTTCTAAA-ATTA-ACTGCA-TCAAAA-----CGTATGATTTCTCAACACCTC---TTA--AA---ACA---ATTCTTCACGATGAATTAAA-ATATAGGCTTT-TTCAGATAATTGA-CAAATGCTTTTTGAACAAAAACGGCACCCGAAAATACAAGT-TTC--TG-----GTCATTGGGAAACAAGATACATATTTTGTCAGAAA--CCACTCTGATCGCCCACACAAGTACTCTGAAGTAGATATCAAGAGC-ATGCTTGGGTTTCTTAGATGATA-TTTATGTA----GCCTTTAA-AGACCGTGACTTCCA-ACAATATGGTGGTATTCCTATGGGCACTA---ATGGTGCC-CCCTTA--------TTGGCAGACTTATTTTCATATTCATACGAAGC-AGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGTAGA-CGA--TGTCTTATCA--ATTAAT-AATCATAATTTTCAC-AATTATGTCCATTTGATATATCCTGACGAACTCGA-AATAAAACACACTACAAAAT-ATGACAGATATGCTTC-ATATT-TGGATATTTTACTTAATATTGACTCCAATGGCAGACTGATAACTACA--TTATATG-ATAAACGTGA------TGACTTTGACTTTGGAATCGTCAACTTTACTTTTCTATGTAGTAATATACCGCTGTCGCTTT-TTTATGGTGAGTAT-GTCTCTT-AGT-TGATTCG--ATACGCAAGGG----CATGCGTATGGAAA--TTTAT-TAAAG-CGAGGACAA-CCACTAACCAAAAAGATGATGTT-GCAGGGTTA-TAACGAAT-CTCGTTTATATCGTTTAAAATCATCAA-TTCGCAAAT-TCT-AC-GGTCGC-TATAATGAC--CTTG----TTTGC--------GA-TTA--------CAAATTATCAC-TA--AGTC----AT-ATGT--TGGCT------------------TATT----------CAT-----TTG-----------------GTACA-A--GAT-TTG-ACAACG--GG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGTTGTGACCGGTCAGCAGATGATGCTT-ACTCCTTCCTGGCA-CC-TGCTCCTGATTTCGCT-ATTTTCGAAGGTCT-GTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG--TTTTATGGG----ACTATGAT-TACGTT-T-AATATT-TCG-AT--ACTTCGCC-ATTTTA
gi|2 : TGGCTCCAGCCGACAAAGCTGGTAACAATATTGGTTTTTG-CTGT--AAGGCTTCATTATACAACTGCATTTTAAACGAACTTGGG--TACTTCACCACATTTGGTATTTCCTACTTACACTTCCATGC--TCT--TTTCAAAAGAC--AATTC-TCAAAATAATGCTTTCAGTTTTAAACACATTAATATCACAGTC--AATGGGAT-GGGAAGAATAT-AACAACCGTACCTA--TACTGGATTCCAAAACTTTCTAA-AATCC-TACAATACAAAGATATATT-GCGGATT--AGTAATGTA-TCTACC-AGCCACTGT-CTTACTCCT--CCAGAAAATATTGACTAGCT-TCAATAGA-CCACAACTTACAAGAAGTATTTATGAAACTACATATGCCAGGAAGTGGTGGTAAATCAAATGT-GATTAACAAAAA---CATAGAATTTCTGGTGAATGGAATTCCAG-------AACCTTTCCACATATCATACAACATTCAAAAACAACCG-A-GACTTTTCAACAC--T---TTA--CACGGACC---ATCCCACACGCTAAATTAAAGACA-AGTCTTTGTTAACATTATAGAGCAGTTGCTTCTTTAAC-AAAATGGAAAAAGGAAATATACTTATTCCATGATCAAGCCATT--CAAA-AAAAT---CATTTTGTTA-AAGTTCCACTCTGATT-CTCAAACAAGTACTCTGAAGTTGATGT-AACAGCAATCCTCAA-----TTGGACAATACTTTTTGTATTTGGCC---AATAGGTC----TTTCCAGACAGTCTTCTGGAATTCCAGT-GGCACGAATTATGTTACCACCCTTGGCGTGGCCTTCACAGCCTTATT---ATAGGTATACAGAACGAGA---TGTTTA
gi|5 : TTACCGTA--TTGATACTCGATTCTAAACTT-CACAAAACCCCTTAT----------TGTATCTAATGGTTCAAGTAA-ATGTTCTATCTAGCTCCTATCTCTGCTACTCGCG--AA------GAATA---------------------T-C-A---ATAGCTGTGCCGCAACATATGCCA-GAAGTGGT-GTCAATCA--TGTGGA--------GATTCTAAAAA--TTA------------------------AG--TTTCCCCAA-ACCA-AC-ACA-TCAAA------CGTATGATTTTTCTACACTTTGCACTAGTGA---ACAGCCATTCCTTACGAATAATCAAA-GGCTAGGCTCT-TTGACATCATAGA-AAGTTGCTTCCTTAATAAtcataattactcaatcataattttcaccaattatgtccatttatatatcctgacgaacccgacaataaaaaacaccacagaatcatgacagatgtgctttgatattctggatatttactaattgactcaatgcagactgacaactgcaaattatatggataaatgtgattactttgactttgcaatcgtcaactttccttttctatgtataatgtacactacgccttgtttaggatgtgtacagtctctcaagtctgattcgatcagaaggactgccatgcgtatgattatttgtataaagtcgagtccaactactaaccaaaaa
gi|18 : aggacgaataaataat-ACAAAGATACATC-GCTGGTTtgaaaaaggaaattata
gi|2 : tCAGCCTTA-TTATAGGTATACAGAACGAGATGT-TTATCATAATTACTCAATCATAATTTTCACCAATTATGTCCATTT-ATATATCCTGACGAACCCGACAATAAAAAACACCACAGAATCATGACAGATGTGCTTTGATATTCTGGATATTT-ACT--A-ATTGACTC-AATG-CAGACTGACAACTGCAAATTATATGGATAAATGTGA------TTACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTA-TAATGTA-CACTA-CGCCTTGTTTAGGATGTGTACAGTCTCTCAAGTCTGATTCG--AT-CAGAAGGACTGCCATGCGTATGATTA--TTTGTATAAAGTCGAGTCCAA-CTACTAACCAAAAAaccctgtttactaaatgtttcgactacgggctcac
gi|22 : tggctccagccgacaaagctggtaacaatattggtttttgctgtaaggcttcattatacaactgcattttaaacgaacttgggtacttcaccacatttggtatttcctacttacacttccatgctcttttcaaaagacaattctcaaaataatgctttcagttttaaacacattaatatcacagtcaatgggatgggaagaatataacaaccgtacctatactggattccaaaactttctaaaatcctacaatacaaagatatattgcggattagtaatgtatctaccagccactgtcttactcctccagaaaatattgactagcttcaatagaccacaacttacaagaagtatttatgaaactacatatgccaggaagtggtggtaaatcaaatgtgattaacaaaaacatagaatttctggtgaatggaattccagaacctttccacatatcatacaacattcaaaaacaaccgagacttttcaacactttacacggaccatcccacacgctaaattaaagacaagtctttgttaacattatagagcagttgcttctttaacaaaatggaaaaaggaaatatacttattccatgatcaagccattcaaaaaaatcattttgttaaagttccactctgattctcaaacaagtactctgaagttgatgtaacagcaatcctcaattggacaatactttttgtatttggccaataggtctttccagacagtcttctggaattccagtggcacgaattatgttaccacccttggcgtggccttcaG-ATAAA--TGA--------AATTTGACTTAGCAATCGTCAACTTTCCTTTTC
gi|3 : ttagaaaAAACGTGACGACTTTGACTTTGACTTTGCAATCGTCAACTTTCTTTTTCTATGTAGTAATGTACCACTATCACCTG-CGTATGATGGGTCT-CTCTCTC-AGT-TGATTCGCAATA-GTA-TGG----CATCCGTGTGAGAACGTTT-T-TAAAG-CAAGG-CAAGCTACTAACAAAAAAGTTGATGTTTGCAAGGTGA-TCACGAAT----------ATCGTTTAAAATAATAAT-TTCGCAAAT-TCT-AC-GGTCGCCTATAATGAC--CTGT----TTTGT--------GA-TTA--------CAAAT---CAC-TATTAGTC----AT-ATGT--TGACTGATTTGTTTCAAACCCTTTATTAGACTGT---CAT-----TTTC----------------GCACT-T--AAT-TTG-ATGACG--GG-TTACCC-GTTT-ACTA---TGTT-TCGACTATGGGCTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACT--TTTCT-----------------TTTAG-------TCGAAGGTAA-GTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-ATG--
gi|4 : T-GCAGGGTTAACAACGAACACTCGTTTACATC----------ATCAA-TTCGCAAAT-T---AT-GGTCGC-TA--ATGAC---TTG----TTTGC--------GG-TTA--------CAAATTATT---CA--AGTC----ATTATGT--TGACTGATTT-------------TGTT----------TATACCCTTTGTTAAGACTGTAATTTTCGTACT-A--TCT-TTG-ACGACG--GG-TAACCCCGTTT-ACTT---TGTTATCGACTACGGGCTCATCGGCGTGTGTGACGCGCTAGCGAGGGATGCTTAACTCCTCTATGGCA-CCATGATCCTG-CTTCGCT-TTTGTCGAAGGTTTCGTGTTCGCCT------CAC-T-CG--GTGTT-TG--T-A---T-GTGTTTTTTTTGGA----ACTATGATATACATTAT-AATACC-TTT-GT--A-TTCG-C-ATTT
gi|7 : GTTA-TAACCAAT---------TATCGTTTAA--TCATCAATTTCGCAAATGTCTGACTGGTTCT-TATAATGGCCTCTTGCTCTCTCGCACTGTACAGATTTAGTCTCTGTCGAATTGTCATGTG--AGCCTCTGAT-ATGTCATAGCT--------------------CT----------CAT-----TTC-----------------CTACT-ATTGATCTTG-AC-ACG--GGTTAATCCCGTTTAACTTACATATT-TCagta
gi|6 : GTCGC-TATAATGAC--CTTG----TTTGC--------GA-TTA--------CAAAGTATCAC-TA--AGTC----AT-ATGT--TGACT------------------GATTTGTTTCATACCAT-----TTGTTAGACTGTCATTTTC-ATACT-A--GAT-TTG-ACGACG--GG-TAACCCCGTTT-ACTT---TGTT-TCGACTACAGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTGCCTTCGCT-TTCGTCGAAGGTCC-GTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG--TTTT-TTGG----ACTATGAT-TACGTT-T-CATACT-TTG-TT--ACTTCGCC-ATTTTA
gi|27 : TCGC-TATAATGAC--CGTG----TTTGC--------TA-TTA--------CAAAtattg
gi|12 : T----------CAT-----TTC-----------------ATACTTA--GAT-TTGGACGACG--TG-TAACCCTGTg
gi|25 : tcacttaagtatcatatgtgcgagctgaaggatttattagtatcagtgcgttctgtcttaactgT-----TTC-----------------GTACT-A--GAT-TTG-ACGACG--GA-CAATCCCG
gi|18 : tTACA-AA-GAT-----ACATCGCTGG-TTACCCTGTTT-ACTAAA-TGTT-TCGACTACGGGCTCA-C
gi|21 : -A--AAT-TTG-ACGACG--GG-TAATCCCGTTT-ACTT---
gi|15 : aggttattattttctcaaaaagTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACT--TTTCT-----------------TTTAG-------TCGAAGGTAA-GTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-
gi|9 : -CGGCGGT-GTGACCGGTCAGCAGA-GATGCTT-ACTCCTCCATGGCA-CC-TGATCCTACCTTCGCT-TTTGTCGGAGGTCC-GTGTTGCCCTA-----CGC-T-CG--AT-TT-TG--T-A---T-ATG--TTTTAT--------TTATGAT-TACGTT-T-GACAC------AT---TTTCGCC-TTTTTa
gi|10 : GTCAGCAGAAGATACTT-ACTCCT-------A-CC-TGATCCTGTTTTTGCT-TTTGTTGGAAGTCC-GTGTTGCCCTG-----CAC-T-CC--AC-TT-TGTAT-A---T-ATG--TTTT-TGGG----TCTATGAT-TACGTT-T-AACACA-TTGTTT--GCTTAGCC-AATTTAgt
gi|8 : -ACTCCT-CATGGCATCC-TGATCCT-ACATCACTTATCGTCGAAGGTC--GTGTTGCCCAAGTCGCCAC-TCCGGCAT-TT-TG--TAA---TGGTG--TTTT-TGGG----tata
gi|14 : CCCTA-----CACGT-CG--AT-TTCTG--T-AGCTT-G-G--TTTT-TGGGGGTAACTATGAT-TGCGTT-TCGATACA-TTG-TTTAACTTCGCggggggggggggggggtggggggactaagtgattcgggtttcgataacttgttactcctcgccatttttatatgtac
gi|20 : ttC-T-CG--AT-TT-TG--T-A---T-GTG--TTTTTTGGG----ACTATGAT-T--GTT-C-----------------CTTCGCC-ATTTTAgcttattatattg
gi|19 : GG----AATATGAT--ACGTT-T-AATAACATTG-TT--ACTTCGCCAATTTTAta
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTAACGCGCTCTGCAGCTGCATCAATCTGATCCTGCTTCGTCTTTCCGAGGTCCCGTGTTCCCCTCACTCCGATGTTTGAATGTATTTTTTTTCCTCTTTTACTATGATACTTATTACTTTTTACTTCCATTTGTA
Unaligned ( gi|13 ): GCCCCTAGTTTTGCTCCTCGAGAAAATTAACTAACTTAAATGCCATAACATATGCCATAAGTGGTTTAAATAAACAAAAAATGATCCTAAAAATT
Unaligned ( gi|16 ): ACAAAGATTCATTGCGGATTTAGTAATGAATGTGTTCCGTCAAGCCCTGTCATTTAAACTCCTCACGGAAAGTGATTGACAGTT
Unaligned ( gi|17 ): TATACGTTTTTTGGACTATATTCAAGTTGATACTTTGTTACTTTCGGCATTTTATCATTAAGC
Unaligned ( gi|23 ): AAGTCCGTAGATTGACTGATTTGTTTCATACCATTTGTTA
Unaligned ( gi|24 ): TTCATACTTTGTTACTTCGCCATTTTTATATTTAGC
Unaligned ( gi|26 ): ATACTTTGTTACTTCGCCATTTTATATTAAAC
Alignments
lowQualScore : 1111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 22 11 22 11 1 1 22 3333333 22 2 1 2222 22 11 2 2222 111 22 1 111 2222 1 1 1 11 2222222 22222 2222222222222 9999999999999999999999 2 2 1 2222 1 0000000000000000000000000000000 222222 1 2 555555 11 99999999999999 3333 2 11 111 1 1 11 22222 333 2 333 2 11 2 2 1 55555 1 2222 333 1 4444 1 2 222 1 33333333 333 1 333 33333333333333333333333333333333 2 1 11 2 11 1 1 2 1 1 1 1 2 3333 2 2 11 555555555 2222 2222 11 2 33333333333333333 33 222 2 11 2 1 444444444444 3333333333 2 11111 1 1111 2222222222 11111 44444444444444444444444444444444444444444444444444444444444444 111 11 1 111111 5555555555555555555555555555555555555555
lowQualScore : 4 5 0 77 2 4 88 3 4 77 77 3 4 5 5 4 77 8888888 77 0 3 5 4 4 3 4444 2 77 88 0 7 2222 555 6 99 1 4 11 1 6 444 2 8 0 3333 0 5 3 6 11 5555555 1 66666 0 3333333333333 7 6666666666666666666666 0 1 0 1 3 3 1 2 6 1111 0 2 1 6 0000000000000000000000000000000 0 22 555555 2 3 000000 7 7 0 1 11 11111111111111 0 1 333 0 4444 1 0 3 3 3 66 7 0 7 000 3 55 5 88 77777 000 0 555 0 88 0 3 4 0 2 5 2 00000 5 4 4444 555 5 2222 5 2 55 4 4 0 2 3 111 5 33333333 2 2 555 55 5 555 22222222222222222222222222222222 0 5 88 0 88 2 5 5 0 5 3 5 5 5 0 8888 0 0 88 6 6 999999999 6 6 7 8888 1 1 6666 44 3 99999999999999999 1 0 22 00 666 3 66 3 1 4 7 0 777777777777 8888888888 0 00000 0 6 99 4444 6 99 3 2222222222 6 6 66666 2 44444444444444444444444444444444444444444444444444444444444444 888 5 66 5 5 4 0 5 777 6 5 2 3 5 66 4 4 3 666 4 2 4 2 6 777777 3 7 55 7 3 44 3 555 3 666 0000000000000000000000000000000000000000 3 55 3 1 666 3 55 3 2 3 44 3 44 3
lowQualScore : . . . .. . . .. . . .. .. . . . . . .. ....... .. . . . . . . .... . .. .. . . .... ... . .. . . .. . . ... . . . .... . . . . .. ....... . ..... . ............. . ...................... . . . . . . . . . .... . . . . ............................... . .. ...... . . ...... . . . . .. .............. . . ... . .... . . . . . .. . . . ... . .. . .. ..... ... . ... . .. . . . . . . . ..... . . .... ... . .... . . .. . . . . . ... . ........ . . ... .. . ... ................................ . . .. . .. . . . . . . . . . . .... . . .. . . ......... . . . .... . . .... .. . ................. . . .. .. ... . .. . . . . . ............ .......... . ..... . . .. .... . .. . .......... . . ..... . .............................................................. ... . .. . . . . . ... . . . . . .. . . . ... . . . . . ...... . . .. . . .. . ... . ... ........................................ . .. . . ... . .. . . . .. . .. .
lowQualScore : 0 0 0 55 5 0 55 0 0 55 55 0 0 5 5 0 55 0000000 55 0 0 0 0 0 0 0000 5 55 00 0 7 7777 000 7 00 0 0 77 0 7 333 2 0 6 2222 0 5 2 2 00 2222222 0 00000 8 2222222222222 3 7777777777777777777777 7 0 7 0 3 3 0 3 7 0000 7 3 0 7 7777777777777777777777777777777 7 00 333333 3 7 000000 3 3 7 0 00 77777777777777 7 0 000 7 3333 0 7 3 7 7 00 3 7 3 000 3 55 5 00 00000 000 0 000 0 55 0 0 0 0 5 5 5 00000 0 0 0000 000 5 5555 0 5 55 0 0 0 5 0 555 5 00000000 5 5 000 00 0 000 00000000000000000000000000000000 0 5 00 0 55 5 0 0 0 0 0 0 0 0 0 5555 0 0 55 7 5 555555555 7 7 3 0000 0 0 3333 77 3 33333333333333333 0 7 00 00 777 7 00 3 0 0 3 0 000000000000 0000000000 0 55555 0 7 22 2222 7 22 5 7777777777 7 7 77777 5 88888888888888888888888888888888888888888888888888888888888888 777 0 99 0 0 4 9 7 999 7 7 5 0 0 99 4 4 3 222 4 7 4 9 7 111111 6 3 00 3 6 66 3 888 3 444 3333333333333333333333333333333333333333 6 00 6 3 444 3 33 1 1 1 22 1 22 3
consensus : NTGGCTCCAGCCGACAAAGCNGGTAACAACATTGGTCTTTGCTTGTAAAAGNCNCCATTATACAACTGCNTTTTAAACGAACTNGGGTTTACTTCACCACATCTGGNANTTCCTACTTACACTTCCANGCAATCTGACTTCAAAAGACGAAATTCTTCAAAATNATGCTTTCNGTTTTGAACACNTTNATATCACANTCCGAATGGGATCGGGACGAATA--T-AATT-ACCGTACCTT-ATACTGGATTCCGAAACTTCATAAAANCCCTTACAA-ACAAAGATGCATC-GCTGGTTCA--AGT-AATGTGTTCTACCAAGCCNCTGTCTTT---ACTNCTCGCNAGAAAAT-ATTGA-TAGCT-TCAATAGA-CCAC---TT-CA-GAGGTA-CTATGCCGCTACATATGCCAG-AAGTGGTG-TCAATCAGATGTGGATT--CAAAAACTCCAAAGAATTT-TGG--AA---AANTCCAG------A-ACCTTTCCAAA-ATCA-ACAGCAT-CAAAA-----CGTATGATTTTTCAACACTTTGCACT--TGA--GACA--CATTCCTCACGATNAATTAAAGGCATAGGCTTT-TTNACATNATAGA-AAGTTGCTTCTTTAACAAAAATGGAAAAAGGAAA-TATANNTATTCCATGATCAAGCCATTNGGAAACAAGATACACATTTTGTCAGAAGTTCCACTCTGATCGCCCANACAAGTACTCTGAAGTNGATGTCAANAGCAATNCTCGGGTTTCTTGGACGATACTTTNTGTATTTGGCCTTTAATAGGCCGTGACTTCCAGACAGTNTNNTGGNATTCCNGTGGGCACNAATNGTGTTACCACCCTTGGCGTGGCCTTCGCAGNCTTATTTTCATANNCATACGGAGCGAGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGCAGAACGAGATGTCTTATCATAATTANTCAATCATAATTTTCACCAATTATGTCCATTTGATATATCCTGACGAACCCGACAATAAAANACACCACAGAATCATGACAGATGTGCTTCGATATTCTGGATATTTTACTTAATATTGACTCCAATGGCAGACTGACAACTGCAAATTATATGGATAAACGTGA-TG------ACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCGCTATCGCCTTGT-TATGATGNGTAC-GTCTCTCAAGT-TGATTCG--ATACGNAAGGGCTG-CATGCGTATGANAA--TTTGT-TAAAG-CGAGG-CAA-CTACTAACCAAAAAGNTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A---TCATCAATTTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTTCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTG-CTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-GATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
Reference ( family-914 ) : NTGGCTCCAGCCGACAAAGCTGGTAACAATATTGGTTTTTGCT-GTAA--GGCTTCATTATACAACTGCATTTTAAACGAACTTGGGT--ACTTCACCACATTTGGTATTTCCTACTTACACTTCCATGC--TCT--TTTCAAAAGAC--AATTCT-CAAAATAATGCTTTCAGTTTTAAACACATTAATATCACAGTC--AATGGGAT-GGGAAGAATA--T-AACN-ACCGTACCTNGATACTNGATTCCAAANCTTCNCAAAANCCCTTACAA-ACAAAGATATATC-GCTGGTTCA--AGT-AATGTGTTCTACCTAGCCNCTGTCCCT---GCTNCTCGCNAGAAAAT-ATTGANTAGCT-TCAATAGA-CCACAACTTACAAGAAGTANCTGTGNCGCNACATATGCCAGGAAGTGGTGGTNAATCAAATGTGGATTAACAAAGATTCCANAGAATTTNTGGTGAATGGAATTCCAG------AGACCTTCCCNNATACCATACAACATTCAAAAACAACCGTATGACTTTTCNACACTTTGCACTAGTNACGGACNGCCATCCCNCACGNNNAATCAAAGGNNTAGNCTCTGTTGACATCATAGAGNAGTTGCTTCCTTAACAAAAATGGAAAAAGGAAA-TATACTTATTCCATGATCAAGCCATTC--AAA-AAAAT---CATTTTGTTA-AAGTTCCACTCTGATT-CTCAAACAAGTACTCTGAAGTTGATGT-AACAGCAATCCTCAA-----TTGGACAATACTTTTTGTATTTGGCC---AATAGGTC----TTTCCAGACAGTCTTCTGGAATTCCAGTGG-CACGAATTATGTTACCACCCTTGGCGTGGCCTTCACAGCCTTATT---ATAGGTATACAGAACGAGA---TGTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCTTA-TTATAGGTATACAGAACGAGATGT-TTATCATAATTACTCAATCATAATTTTCACCAATTATGTCCATTT-ATATATCCTGACGAACCCGACAATAAAAAACACCACAGAATCATGACAGATGTGCTTTGATATTCTGGATATTT-ACT--A-ATTGACTC-AATG-CAGACTGACAACTGCAAATTATATGGATAAACGTGA-T-------ACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCACTATCGCCTNGCGTANGATGNGTNCANTCTCTCAAGTCTGATTCGCAATACGNAANGGCTGCCATNCGTGTGANNACGTTTGTATAAAGTCGAGNCCAAGCTACTAACNAAAAAGTTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A---T-ATCAA-TTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTCCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTG-CTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-AATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
gi|1 : TAGTTCCAGCTGATAAAGCAAGTAACAACATTG-TCTTTGTTTGTAAAAGTCACTATTATAC--TTGTCTTTTAAATGAACTAGGGTTTACTTCA--ACATCTGGGAAT-CCTACTTATACT-CCAAGCAATCTGACT---AAAGATGAAATTCTTCAAAATCAT-CTTTCTGTTTTGAATACTTTCA----ACATTCCGAA--GAATCAGGATCAATT--TGAATT-ACCATACCTT--TACTGGATTCCGAAATTGCATAAGAATCCTTACAA-ACAAAGATGCATC-GCTGGTTCC--AGG-AA-GTGCTCTACCAAGCGTCTATCCTT---AATACTAACTA--AACT-AC-GAATAGCTGTTAA-AGAGTCAC---TT-CA-GAGATA-CTATTCCACTACATATTCCAG-AAGTGGTG-TCAATCAGATGTGGATTCTCAAAAACTCCAAAGAGGTTATAG--AA---AACTCCAGTTCACGAGATTTTTCTAAA-ATTA-ACTGCAT-CAAAA-----CGTATGATTTCTCAACACCT----CT--TAA--AACA---ATTCTTCACGATGAATTAAAA-TATAGGCTTT-TTCAGATAATTGACAAAT-GCTTTTTGAACAAAAACGGCACCCGAAAA-TACAAGT-TTC--TG-----GTCATTGGGAAACAAGATACATATTTTGTCAGAAA--CCACTCTGATCGCCCACACAAGTACTCTGAAGTAGATATCAAGAGCA-TGCTTGGGTTTCTTAGATGATA-TTTATGTA----GCCTTTAA-AGACCGTGACTTCCA-ACAATATGGTGGTATTCCTATGGGCACTAATGGTG---CC-CCCTTA--------TTGGCAGACTTATTTTCATATTCATACGAAGC-AGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGTAGA-CGA--TGTCTTATCA--ATTAAT-AATCATAATTTTCAC-AATTATGTCCATTTGATATATCCTGACGAACTCGA-AATAAAACACACTACAAAAT-ATGACAGATATGCTTC-ATATT-TGGATATTTTACTTAATATTGACTCCAATGGCAGACTGATAACTACA--TTATATG-ATAAACGTGA-TG------ACTTTGACTTTGGAATCGTCAACTTTACTTTTCTATGTAGTAATATACCGCTGTCGCTTTTT-TATGGTGAGTAT-GTCTCTTA-GT-TGATTCG--ATACGCAAGGGC----ATGCGTATGGAAA--TTTAT-TAAAG-CGAGGACAA-CCACTAACCAAAAAGATGATGTT-GCAGGGTTA-TAACGAATCTCGTTTATA-TCGTTT--A-AAATC-ATCAA-TTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGGCT----------------------------------TA--T-----T---------------------CATTTG-GTACA-A--GAT-TTG-ACAACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGTTGTGACCGGTCAGCAGATGATGCTT-ACTCCTTCCTGGCA-CC-TGCTCCTGATTTC-G-CTA-TTTTCGAAGG-TCTGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTTA-------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-AATA-TTTCG-AT--AC-T--TCGCC-ATTTTA
gi|10 : cGTCAGCAGAAGATACTT-ACTCCT-------A-CC-TGATCCTG-TTTTTG-CTT-TTGTTGGAAG-TCCGTGTTGCCCTG-----CAC-T-CC--AC-TT-TGTAT-A---T-ATG---TTTT--------T-GG-----------------------G----T-CTA--TGAT-TACG---TT-T-AACA-CATTGTTT--GC-T--TAGCC-AATTTA
gi|11 : A-TC-TGATCCTG-CTTC-GTCTT-TC--CGAGGT-CCCGTGTTCCCCT------CAC-TCCG--ATGTT-TG--A-A---T-GTA---TTTTTTTTCCTCT-TT-----------------------T----A-CTA--TGA--TAC-----T-T-ATTA-CTTT--TT--AC-T--T--CC-ATTTtata
gi|12 : ttaacgcgctctgcagctgcatcaTT--ATTAGT----A------TCAGT-GCG-----TT--CTGTC-------------TT----------------AA--C-----T-------------------GTCATTTC-ATACTTA--GAT-TTGGACGACGTG-TAACCCTGTgta
gi|14 : tcacttaagtatcatatgtgcgagctgaaggatCCCTA-----CACGT-CG--AT-TTCTG--T-AGCTT-G-G---TTTT--------T-GG-----------------------GGGTAA-CTA--TGAT-TGCG---TT-TCGATA-CATTG-TTTAAC-T--TCGC
gi|15 : ttTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACTTTTC---------------------------TTT-TAGTCGAAGG-TAAGTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-gcttattatattg
gi|16 : -ACAAAGATTCATT-GCGGATTTAGTAATGAATGTGTTCCGTCAAGCC-CTGTCATTTAAACTCCTCACG-GAAAGTGATTGAa
gi|17 : --T-A---T-ACG---TTTT--------T-TG-----------------------G----A-CTA--TATT-CAAG----T-T-GATA-CTTTG-TT--ACTT--TCGGC-ATTTTAcagtt
gi|18 : -ACAAAGATACATC-GCTGGTTtcattaagc
gi|18 : tGG-TTACCCTGTTT-ACTAAA-TGTT-TCGACTACGGGCTCA-Caccctgtttactaaatgtttcgactacgggctcac
gi|19 : tacaaagatacatcgctG-----------------------G----A-ATA--TGAT--ACG---TT-T-AATAACATTG-TT--AC-T--TCGCCAATTTTA
gi|2 : tTGGCTCCAGCCGACAAAGCTGGTAACAATATTGGTTTTTGCT-GTAA--GGCTTCATTATACAACTGCATTTTAAACGAACTTGGGT--ACTTCACCACATTTGGTATTTCCTACTTACACTTCCATGC--TCT--TTTCAAAAGAC--AATTCT-CAAAATAATGCTTTCAGTTTTAAACACATTAATATCACAGTC--AATGGGAT-GGGAAGAATA--T-AACA-ACCGTACCT--ATACTGGATTCCAAAACTTTCTAAAATCC--TACAATACAAAGATATATT-GCGGATT----AGT-AATGTAT-CTACC-AGCCACTGTCT-T---ACTCCTC--CAGAAAAT-ATTGACTAGCT-TCAATAGA-CCACAACTTACAAGAAGTATTTATGAAACTACATATGCCAGGAAGTGGTGGTAAATCAAATGTG-ATTAACAAAAA---CATAGAATTTCTGGTGAATGGAATTCCAG------A-ACCTTTCCACATATCATACAACATTCAAAAACAACCG-A-GACTTTTCAACACTTTACAC-------GGAC---CATCCCACACGCTAAATTAAAGACA-AGTCTTTGTTAACATTATAGAGCAGTTGCTTCTTTAACAAAA-TGGAAAAAGGAAA-TATACTTATTCCATGATCAAGCCATTC--AAA-AAAAT---CATTTTGTTA-AAGTTCCACTCTGATT-CTCAAACAAGTACTCTGAAGTTGATGT-AACAGCAATCCTCAA-----TTGGACAATACTTTTTGTATTTGGCC---AATAGGTC----TTTCCAGACAGTCTTCTGGAATTCCAGTGG-CACGAATTATGTTACCACCCTTGGCGTGGCCTTCACAGCCTTATT---ATAGGTATACAGAACGAGA---TGTTTAtattgggaca
gi|2 : CAGCCTTA-TTATAGGTATACAGAACGAGATGT-TTATCATAATTACTCAATCATAATTTTCACCAATTATGTCCATTT-ATATATCCTGACGAACCCGACAATAAAAAACACCACAGAATCATGACAGATGTGCTTTGATATTCTGGATATTT-ACT--A-ATTGACTC-AATG-CAGACTGACAACTGCAAATTATATGGATAAATGTGATT-------ACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTA-TAATGTA-CACTA-CGCCTTGTTTAGGATGTGTACAGTCTCTCAAGTCTGATTCG--AT-CAGAAGGACTGCCATGCGTATGATTA--TTTGTATAAAGTCGAGTCCAA-CTACTAACCAAAAAtcataattactcaatcataattttcaccaattatgtccatttatatatcctgacgaacccgacaataaaaaacaccacagaatcatgacagatgtgctttgatattctggatatttactaattgactcaatgcagactgacaactgcaaattatatggataaatgtgattactttgactttgcaatcgtcaactttccttttctatgtataatgtacactacgccttgtttaggatgtgtacagtctctcaagtctgattcgatcagaaggactgccatgcgtatgattatttgtataaagtcgagtccaactactaaccaaaaa
gi|20 : tggctccagccgacaaagctggtaacaatattggtttttgctgtaaggcttcattatacaactgcattttaaacgaacttgggtacttcaccacatttggtatttcctacttacacttccatgctcttttcaaaagacaattctcaaaataatgctttcagttttaaacacattaatatcacagtcaatgggatgggaagaatataacaaccgtacctatactggattccaaaactttctaaaatcctacaatacaaagatatattgcggattagtaatgtatctaccagccactgtcttactcctccagaaaatattgactagcttcaatagaccacaacttacaagaagtatttatgaaactacatatgccaggaagtggtggtaaatcaaatgtgattaacaaaaacatagaatttctggtgaatggaattccagaacctttccacatatcatacaacattcaaaaacaaccgagacttttcaacactttacacggaccatcccacacgctaaattaaagacaagtctttgttaacattatagagcagttgcttctttaacaaaatggaaaaaggaaatatacttattccatgatcaagccattcaaaaaaatcattttgttaaagttccactctgattctcaaacaagtactctgaagttgatgtaacagcaatcctcaattggacaatactttttgtatttggccaataggtctttccagacagtcttctggaattccagtggcacgaattatgttaccacccttggcgtggccttcaC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------TTGG-----------------------G----A-CTA--TGAT-T--------------------G-TT--CC-T--TCGCC-ATTTTA
gi|21 : -A--AAT-TTG-ACGACGGG-TAATCCCGTTT-ACTT---ta
gi|22 : aggttattattttctcaaaaagGATAAA--TGA---------AATTTGACTTAGCAATCGTCAACTTTCCTTTTC
gi|24 : ttagaaaT-T-CATA-CTTTG-TT--AC-T--TCGCC-ATTTT
gi|25 : TTTTCGTACT-A--GAT-TTG-ACGACGGA-CAATCCCGtatatttagc
gi|26 : ATA-CTTTG-TT--AC-T--TCGCC-ATTTTA
gi|27 : TCG-CTATAATGAC--CGTG----TTTGCTAT-TACAAAtattaaac
gi|3 : AAACGTGA-CGACTTTGACTTTGACTTTGCAATCGTCAACTTTCTTTTTCTATGTAGTAATGTACCACTATCACCT-GCGTATGATGGGT-CTCTCTCTC-AGT-TGATTCGCAATA-GTA-----TGGCATCCGTGTGAGAACGTTT-T-TAAAG-CAAGG-CAAGCTACTAACAAAAAAGTTGATGTTTGCAAGGTGA-TCACGAAT---------A-TCGTTTAAA-A---T-AATAATTTCGCAAAT-TCT-AC-GGTCGCCTATAATGAC--CTGT----TTTGTGAT-TACAA-----ATCACT----ATTA--GTCA-T-ATG-----TTGACTGATTTGTTTCAAACCCTT----------------TA--TTAGACT-------------------GTCATTTTCGCACT-T--AAT-TTG-ATGACGGG-TTA-CCCGTTT-ACTA---TGTT-TCGACTATGGGCTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACTTTTC---------------------------TTT-TAGTCGAAGG-TAAGTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-ATG---g
gi|4 : TGCAGGGTTAACAACGAA-C--------ACTCGTTT--ACA---TCATCAA-TTCGCAAAT-T---AT-GGTCG-CTA--ATGAC---TTG----TTTGCGGT-TACAAATT--ATT--C----A--A--GTCA-TTATG-----TTGACTGAT-------------TT----------------TG--T-----TTATACCCTTTGTTAAGACTGTAATTTTCGTACT-A--TCT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTTATCGACTACGGGCTCATCGGCGTGTGTGACGCGCTAGCGAGGGATGCTTAACTCCTCTATGGCA-CCATGATCCTG-CTTC-G-CTT-TTGTCGAAGGTTTCGTGTTCGCCT------CAC-T-CG--GTGTT-TG--T-A---T-GTGTTTTTTT--------T-GG-----------------------A----A-CTA--TGATATACA---TTAT-AATA-CCTTT-GT--A--T--TCG-C-ATTT
gi|5 : GGACGAATAAAT-AATTTACCGTA--TTGATACTCGATTCTAAA-CTTCACAAAACCCCTTAT----------TGTATCTAATGGTTCA--AGT-AA-ATGTTCTATCTAGCTCCTATCTCT---GCTACTCGCGA-AGAAT-A-----------TCAATAG----------------------CTGTGCCGCAACATATGCCAG-AAGTGGTG-TCAATCA--TGTGGA--------GATTCTAAA-AATT------------AAGT---------------TTCCCCAA-ACCA-ACA-CAT-CAAA------CGTATGATTTTTCTACACTTTGCACTAGTGA---ACAGCCATTCCTTACGAATAATCAAAGG-CTAGGCTCT-TTGACATCATAGA-AAGTTGCTTCCTTAAT---AAT-GAAAAAGGAAATTATAagta
gi|6 : aGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAAGT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TTGTTTCATACCATTTGTTAGAC-----T-------------------GTCATTTTCATACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACAGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTGCCTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-TG-----------------------G----A-CTA--TGAT-TACG---TT-T-CATA-CTTTG-TT--AC-T--TCGCC-ATTTTA
gi|7 : GTTA-TAACCAATT--------A-TCGTTT--A-A---TCATCAATTTCGCAAATGTCTGACTGGTTC-TTATAATGGCCTCTTGCTCTCTCGCACTGTACAGATTTAGTCTCTGTCGA--ATTGTCA-T-GTGAGCCTCTGAT--AT-------------GT----------------CA--TAGC--T-------------------CTCATTTCC-TACT-ATTGATCTTG-AC-ACGGGTTAATCCCGTTTAACTTACATATT-TCtattg
gi|8 : -ACTCCTC-ATGGCATCC-TGATCCTA-CATC-A-CTTATCGTCGAAGG-T-CGTGTTGCCCAAGTCGCCAC-TCCGGCAT-TT-TG--TAA---TGGTG---TTTT--------T-GGGGGGGGGGGGGGGGGGGTGGGGGG----A-CTAAGTGAT-T-CGGGTTT-C-GATA-ACTTG-TT--AC-TCCTCGCC-ATTTT
gi|9 : -CGGCGG-TGTGACCGGTCAGCAGA-GATGCTT-ACTCCTCCATGGCA-CC-TGATCCTACCTTC-G-CTT-TTGTCGGAGG-TCCGTGTTGCCCTA-----CGC-T-CG--AT-TT-TG--T-A---T-ATG---TTTT----------------------------------------ATTTA--TGAT-TACG---TT-T-GACA-CATT---------T--TCGCC-TTTTTtatatgtac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GCCCCTAGTTTTGCTCCTCGAGAAAATTAACTAACTTAAATGCCATAACATATGCCATAAGTGGTTTAAATAAACAAAAAATGATCCTAAAAATT
Unaligned ( gi|23 ): AAGTCCGTAGATTGACTGATTTGTTTCATACCATTTGTTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 1111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 11 11 11 1 1 11 2222222 11 1 1 2222 11 11 1 2222 1 22 1 111 2222 1 1 111 22222 22222222222222222222222222222222222222222222 1 1 1 4444444 0000000000000000000000000000000 1 1 1 1 444444 11 4444444444444 2222 1 11 111 1 1 11 22222 111 1 222 1 11 1 1 1 22222 1 2222 222 1 2222 1 1 222 1 33333333 222 1 222 1 1 11 1 11 1 1 1 1 1 1 1 1 2222 1 1 11 33333333 22 11 11 1 11 11 333333 1 1 1 222 1 1 444444444444 1111111 1 11111 1 1111 2222222222 11111 44444444444444444444444444444444444444444444444444444444444444 111 11 1 111111 5555555555555555555555555555555555555555
lowQualScore : 1 5 5 88 1 1 88 1 1 88 77 1 1 5 5 1 88 8888888 88 5 1 5 1 1 1 4444 1 77 88 5 3 2222 3 6 22 2 1 6 444 1 8 0 3333 0 5 3 3 8 8 111 1 66666 11111111111111111111111111111111111111111111 2 4 0 0 2 2 6 1111111 999 6 4444444444444444444444444444444 3 3 2 3 000000 7 7 11 9999999999999 1 2222 3 1 1 77 7 000 3 22 5 88 77777 888 5 111 5 88 5 1 1 5 1 5 1 66666 5 1 4444 111 5 3333 5 1 22 1 1 5 1 1 111 5 33333333 2 1 111 22 5 111 5 5 88 5 88 1 5 5 5 5 1 5 5 5 5 5555 5 5 88 6 6 44444444 6 6 0 7 00 1 44 44 3 88 44 1 555555 1 3 3 3 3 555 3 1 7 0 777777777777 9999999 2 5 00000 0 6 99 4444 6 99 3 2222222222 6 6 66666 2 44444444444444444444444444444444444444444444444444444444444444 3 1 5 66 5 5 4 0 5 777 6 5 2 3 5 66 4 4 3 666 4 2 4 2 6 777777 3 7 55 7 3 44 3 555 3 666 0000000000000000000000000000000000000000 3 55 3 1 666 7777 3 2 3 44 3 44 3
lowQualScore : . . . .. . . .. . . .. .. . . . . . .. ....... .. . . . . . . .... . .. .. . . .... . . .. . . . ... . . . .... . . . . . . ... . ..... ............................................ . . . . . . . ....... ... . ............................... . . . . ...... . . .. ............. . .... . . . .. . ... . .. . .. ..... ... . ... . .. . . . . . . . ..... . . .... ... . .... . . .. . . . . . ... . ........ . . ... .. . ... . . .. . .. . . . . . . . . . . .... . . .. . . ........ . . . . .. . .. .. . .. .. . ...... . . . . . ... . . . . ............ ....... . . ..... . . .. .... . .. . .......... . . ..... . .............................................................. . . . .. . . . . . ... . . . . . .. . . . ... . . . . . ...... . . .. . . .. . ... . ... ........................................ . .. . . ... .... . . . .. . .. .
lowQualScore : 0 0 5 55 0 0 55 0 0 55 55 0 0 5 5 0 55 0000000 00 5 0 0 0 0 0 0000 0 55 00 0 7 7777 3 7 77 0 0 7 333 4 0 6 2222 0 5 2 2 8 0 888 0 00000 33333333333333333333333333333333333333333333 0 0 0 0 5 0 7 3333333 333 7 7777777777777777777777777777777 3 3 0 3 777777 3 3 00 7777777777777 0 0000 3 0 0 33 3 000 3 00 5 00 00000 555 0 000 0 55 0 0 0 0 0 5 0 55555 0 0 0000 555 5 5555 0 0 00 0 0 0 0 0 555 5 00000000 5 0 000 00 0 000 0 5 00 0 55 0 0 0 0 0 0 0 0 0 5 0000 0 0 55 7 5 55555555 7 7 7 3 00 0 00 77 3 33 00 0 777777 0 3 7 3 3 000 3 0 3 0 000000000000 5555555 5 5 55555 0 7 22 2222 7 22 5 7777777777 7 7 77777 5 88888888888888888888888888888888888888888888888888888888888888 6 7 0 99 0 0 4 9 7 999 7 7 5 0 0 99 4 4 3 222 4 7 4 9 7 111111 6 3 00 3 6 66 3 888 3 444 3333333333333333333333333333333333333333 6 00 6 3 444 9999 1 1 1 22 1 22 3
consensus : NTGGCTCCAGCCGACAAAGCNGGTAACAACATTGGTCTTTGCTTGTAAAAGNCNCCATTATACAACTGCNTTTTAAACGAACTNGGGTTTACTTCACCACATCTGGNANTTCCTACTTACACTTCCANGCAATCTGACTTCAAAAGACGAAATTCTTCAAAATNATGCTTTCNGTTTTGAACACNTTNATATCACANTCCGAATGGGATCGGGACGAATA--T-AATT-ACCGTACCT-ATACTGGATTCCGAAACTTCATAAAANCCCTTACAA-ACAAAGATGCATC-GCTGGTTCA--AGT-AATGTGTTCTACCAAGCCCCTATC-TTT--ACTCCTCGCNAGAAAAT-ATTGA-TAGCT-TCAATAGA-CCAC---TT-CA-GAGGTACT-ATGCCACNACATATGCCAG-AAGTGGTG-TNAATCAGATGTGGATT--C--AAAAACTCCAAAGAATTT-TGG--AA---AANTCCAG-------GACCTTTCCAAA-ATCA-ACAGCAT-CAAAA-----CGTATGATTTTTCAACACTTTGCACT--TGAGACA--CATTCCTCACGATNAATTAAAGGCATAGGCTTT-TTNACATNATAGAN-AGTTGCTTCTTTAACAAAAATGGAAAAAGGAAA-TATANNTATTCCATGATCAAGCCATTNGGAAACAAGATACACATTTTGTCAGAAGTTCCACTCTGATCGCCCANACAAGTACTCTGAAGTNGATGTCAANAGCAATNCTCGGGTTTCTTGGACGATACTTTNTGTATTTGGCCTTTAATAGGCCGTGACTTCCAGACAGTNTNNTGGNATTCCNGTGGGCACNAATNGTGTTACCACCCTTGGCGTGGCCTTCGCAGNCTTATTTTCATANNCATACGGAGCGAGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGCAGAACGAGATGTCTTATCATAATTANTCAATCATAATTTTCACCAATTATGTCCATTTGATATATCCTGACGAACCCGACAATAAAANACACCACAGAATCATGACAGATGTGCTTCGATATTCTGGATATTTTACTTAATATTGACTCCAATGGCAGACTGACAACTGCAAATTATATGGATAAACGTGA------TGACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCGCTATCGCCTTN-TTATGATGNGTAC-GTCTCTCAAGT-TGATTCG--ATACGNAAGGGC-G-CATGCGTATGANAAT-TTNT-TAAAG-CGAG-G-CAA-CTACTAACCAAAAAGNTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A--TCATCAATTTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTTCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTG-CTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-GATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
Reference ( family-914 ) : NTGGCTCCAGCCGACAAAGCNGGTAACAACATTGGTCTTTGCTTGTAAAAGNCNCCATTATACAACTGCNTTTTAAACGAACTNGGGTTTACTTCACCACATCTGGNANTTCCTACTTACACTTCCANGCAATCTGACTTCAAAAGACGAAATTCTTCAAAATNATGCTTTCNGTTTTGAACACNTTNATATCACANTCCGAATGGGATCGGGACGAATA--T-AATT-ACCGTACCTTATACTGGATTCCGAAACTTCATAAAANCCCTTACAA-ACAAAGATGCATC-GCTGGTTCA--AGT-AATGTGTTCTACCAAGCCNCTGTC-TTT--ACTNCTCGCNAGAAAAT-ATTGA-TAGCT-TCAATAGA-CCAC---TT-CA-GAGGTACT-ATGCCGCTACATATGCCAG-AAGTGGTG-TCAATCAGATGTGGATT--C--AAAAACTCCAAAGAATTT-TGG--AA---AANTCCAG-------AACCTTTCCAAA-ATCA-ACAGCAT-CAAAA-----CGTATGATTTTTCAACACTTTGCACT--TGAGACA--CATTCCTCACGATNAATTAAAGGCATAGGCTTT-TTNACATNATAGAA-AGTTGCTTCTTTAACAAAAATGGAAAAAGGAAA-TATANNTATTCCATGATCAAGCCATTNGGAAACAAGATACACATTTTGTCAGAAGTTCCACTCTGATCGCCCANACAAGTACTCTGAAGTNGATGTCAANAGCAATNCTCGGGTTTCTTGGACGATACTTTNTGTATTTGGCCTTTAATAGGCCGTGACTTCCAGACAGTNTNNTGGNATTCCNGTGGGCACNAATNGTGTTACCACCCTTGGCGTGGCCTTCGCAGNCTTATTTTCATANNCATACGGAGCGAGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGCAGAACGAGATGTCTTATCATAATTANTCAATCATAATTTTCACCAATTATGTCCATTTGATATATCCTGACGAACCCGACAATAAAANACACCACAGAATCATGACAGATGTGCTTCGATATTCTGGATATTTTACTTAATATTGACTCCAATGGCAGACTGACAACTGCAAATTATATGGATAAACGTGA------TGACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCGCTATCGCCTTG-TTATGATGNGTAC-GTCTCTCAAGT-TGATTCG--ATACGNAAGGGCTG-CATGCGTATGANAAT-TTGT-TAAAG-CGAG-G-CAA-CTACTAACCAAAAAGNTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A--TCATCAATTTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTTCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTG-CTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-GATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
gi|1 : TAGTTCCAGCTGATAAAGCAAGTAACAACATTG-TCTTTGTTTGTAAAAGTCACTATTATAC--TTGTCTTTTAAATGAACTAGGGTTTACTTCA--ACATCTGGGAAT-CCTACTTATACT-CCAAGCAATCTGACT---AAAGATGAAATTCTTCAAAATCAT-CTTTCTGTTTTGAATACTTTCA----ACATTCCGAA--GAATCAGGATCAATT--TGAATT-ACCATACCTT-TACTGGATTCCGAAATTGCATAAGAATCCTTACAA-ACAAAGATGCATC-GCTGGTTCC--AGG-AA-GTGCTCTACCAAGCGTCTATC-CTT--AATACTAACTA--AACT-ACGAA-TAGCTGTTAA-AGAGTCAC---TT-CA-GAGATACT-ATTCCACTACATATTCCAG-AAGTGGTG-TCAATCAGATGTGGATT--CTCAAAAACTCCAAAGAGGTTATAG--AA---AACTCCAGTTCACGAGATTTTTCTAAA-ATTA-ACTGCAT-CAAAA-----CGTATGATTTCTCAACACCT----CT--TAAAACA---ATTCTTCACGATGAATTAAAA-TATAGGCTTT-TTCAGATAATTGAC-AAATGCTTTTTGAACAAAAACGGCACCCGAAAA-TACAAGT-TTC--TG-----GTCATTGGGAAACAAGATACATATTTTGTCAGAAA--CCACTCTGATCGCCCACACAAGTACTCTGAAGTAGATATCAAGAGCA-TGCTTGGGTTTCTTAGATGATA-TTTATGTA----GCCTTTAA-AGACCGTGACTTCCA-ACAATATGGTGGTATTCCTATGGGCACTAATGGTG---CC-CCCTTA--------TTGGCAGACTTATTTTCATATTCATACGAAGC-AGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGTAGA-CGA--TGTCTTATCA--ATTAAT-AATCATAATTTTCAC-AATTATGTCCATTTGATATATCCTGACGAACTCGA-AATAAAACACACTACAAAAT-ATGACAGATATGCTTC-ATATT-TGGATATTTTACTTAATATTGACTCCAATGGCAGACTGATAACTACA--TTATATG-ATAAACGTGA------TGACTTTGACTTTGGAATCGTCAACTTTACTTTTCTATGTAGTAATATACCGCTGTCGCTTTT-TTATGGTGAGTAT-GTCTCTTA-GT-TGATTCG--ATACGCAAGGGC----ATGCGTATGGAAAT-TTAT-TAAAG-CGAG-GACAA-CCACTAACCAAAAAGATGATGTT-GCAGGGTTA-TAACGAATCTCGTTTATA-TCGTTT--A-AAATCATCAATT-CGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGGCT----------------------------------TA--T-----T---------------------CATTTG-GTACA-A--GAT-TTG-ACAACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGTTGTGACCGGTCAGCAGATGATGCTT-ACTCCTTCCTGGCA-CC-TGCTCCTGATTTC-G-CTA-TTTTCGAAGG-TCTGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTTA-------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-AATA-TTTCG-AT--AC-T--TCGCC-ATTTTA
gi|10 : cGTCAGCAGAAGATACTT-ACTCCT-------A-CC-TGATCCTG-TTTTTG-CTT-TTGTTGGAAG-TCCGTGTTGCCCTG-----CAC-T-CC--AC-TT-TGTAT-A---T-ATG---TTTT--------T-GG-----------------------G----T-CTA--TGAT-TACG---TT-T-AACA-CATTGTTT--GC-T--TAGCC-AATTTA
gi|11 : A-TC-TGATCCTG-CTTC-GTCTT-TC--CGAGGT-CCCGTGTTCCCCT------CAC-TCCG--ATGTT-TG--A-A---T-GTA---TTTTTTTTCCTCT-TT-----------------------T----A-CTA--TGA--TAC-----T-T-ATTA-CTTT--TT--AC-T--T--CC-ATTTtata
gi|12 : ttaacgcgctctgcagctgcatcaTT--ATTAGT----A------TCAGT-GCG-----TT--CTGTC-------------TT----------------AA--C-----T-------------------GTCATTT-CATACTTA--GAT-TTGGACGACGTG-TAACCCTGTgta
gi|13 : tcacttaagtatcatatgtgcgagctgaaggatGCCCCTAGT-TTT--GCTCCTCG--AGAAAAT-------TAACT--------A---AC---TT-AA----------ATGCCATAACATATGCCAT-AAGTGGTT-TAAAT
gi|14 : CCCTA-----CACGT-CG--AT-TTCTG--T-AGCTT-G-G---TTTT--------T-GG-----------------------GGGTAA-CTA--TGAT-TGCG---TT-TCGATA-CATTG-TTTAAC-T--TCGCaaacaaaaaatgatcctaaaaatt
gi|15 : ttTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACTTTTC---------------------------TTT-TAGTCGAAGG-TAAGTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-gcttattatattg
gi|16 : -ACAAAGATTCATT-GCGGATTTAGTAATGAATGTGTTCCGTCAAGCC-CTGTCATTTAAACTCCTCACG-GAAAGTGATTGA-CAGTT-a
gi|17 : --T-A---T-ACG---TTTT--------T-TG-----------------------G----A-CTA--TATT-CAAG---TT---GATA-CTTTG-TT--ACTT--TCGGC-ATTTTA
gi|18 : -ACAAAGATACATC-GCTGGTTtcattaagc
gi|18 : tGG-TTACCCTGTTT-ACTAAA-TGTT-TCGACTACGGGCTCA-Caccctgtttactaaatgtttcgactacgggctcac
gi|19 : tacaaagatacatcgctG-----------------------G----A-ATA--TGAT--ACG---TT-T-AATAACATTG-TT--AC-T--TCGCCAATTTTA
gi|2 : tTGGCTCCAGCCGACAAAGCTGGTAACAATATTGGTTTTTGCT-GTAA--GGCTTCATTATACAACTGCATTTTAAACGAACTTGGGT--ACTTCACCACATTTGGTATTTCCTACTTACACTTCCATGC--TCT--TTTCAAAAGAC--AATTCT-CAAAATAATGCTTTCAGTTTTAAACACATTAATATCACAGTC--AATGGGAT-GGGAAGAATA--T-AACA-ACCGTACCT-ATACTGGATTCCAAAACTTTCTAAAATCC--TACAATACAAAGATATATT-GCGGATT----AGT-AATGTAT-CTACCA-GCCACTGTC-TT---ACTCCTC--CAGAAAAT-ATTGACTAGCT-TCAATAGA-CCACAACTTACAAGAAGTATTTATGAAACTACATATGCCAGGAAGTGGTGGTAAATCAAATGTG-ATTAAC--AAAAAC---ATAGAATTTCTGGTGAATGGAATTCCAG-------AACCTTTCCACATATCATACAACATTCAAAAACAACCG-A-GACTTTTCAACACTTTACAC-----GGAC---CATCCCACACGCTAAATTAAAGACA-AGTCTTTGTTAACATTATAGAGCAGTTGCTTCTTTAACAAAA-TGGAAAAAGGAAA-TATACTTATTCCATGATCAAGCCATTC--AAA-AAAAT---CATTTTGTTA-AAGTTCCACTCTGATT-CTCAAACAAGTACTCTGAAGTTGATGT-AACAGCAATCCTCAA-----TTGGACAATACTTTTTGTATTTGGCC---AATAGGTC----TTTCCAGACAGTCTTCTGGAATTCCAGT-GGCACGAATTATGTTACCACCCTTGGCGTGGCCTTCACAGCCTTATT---ATAGGTATACAGAACGAGA---TGTTTAtattgggaca
gi|2 : CAGCCTTA-TTATAGGTATACAGAACGAGATGT-TTATCATAATTACTCAATCATAATTTTCACCAATTATGTCCATTT-ATATATCCTGACGAACCCGACAATAAAAAACACCACAGAATCATGACAGATGTGCTTTGATATTCTGGATATTT-ACT--A-ATTGACTC-AATG-CAGACTGACAACTGCAAATTATATGGATAAATGTGA------TTACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTA-TAATGTA-CACTA-CGCCTTGTTTAGGATGTGTACAGTCTCTCAAGTCTGATTCG--AT-CAGAAGGACTGCCATGCGTATGATTAT-TTGTATAAAGTCGAGTC-CAA-CTACTAACCAAAAAtcataattactcaatcataattttcaccaattatgtccatttatatatcctgacgaacccgacaataaaaaacaccacagaatcatgacagatgtgctttgatattctggatatttactaattgactcaatgcagactgacaactgcaaattatatggataaatgtgattactttgactttgcaatcgtcaactttccttttctatgtataatgtacactacgccttgtttaggatgtgtacagtctctcaagtctgattcgatcagaaggactgccatgcgtatgattatttgtataaagtcgagtccaactactaaccaaaaa
gi|20 : tggctccagccgacaaagctggtaacaatattggtttttgctgtaaggcttcattatacaactgcattttaaacgaacttgggtacttcaccacatttggtatttcctacttacacttccatgctcttttcaaaagacaattctcaaaataatgctttcagttttaaacacattaatatcacagtcaatgggatgggaagaatataacaaccgtacctatactggattccaaaactttctaaaatcctacaatacaaagatatattgcggattagtaatgtatctaccagccactgtcttactcctccagaaaatattgactagcttcaatagaccacaacttacaagaagtatttatgaaactacatatgccaggaagtggtggtaaatcaaatgtgattaacaaaaacatagaatttctggtgaatggaattccagaacctttccacatatcatacaacattcaaaaacaaccgagacttttcaacactttacacggaccatcccacacgctaaattaaagacaagtctttgttaacattatagagcagttgcttctttaacaaaatggaaaaaggaaatatacttattccatgatcaagccattcaaaaaaatcattttgttaaagttccactctgattctcaaacaagtactctgaagttgatgtaacagcaatcctcaattggacaatactttttgtatttggccaataggtctttccagacagtcttctggaattccagtggcacgaattatgttaccacccttggcgtggccttcaC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------TTGG-----------------------G----A-CTA--TGAT-T--------------------G-TT--CC-T--TCGCC-ATTTTA
gi|21 : -A--AAT-TTG-ACGACGGG-TAATCCCGTTT-ACTT---ta
gi|22 : aggttattattttctcaaaaagGATAAA--TGA--------AATTTGACTTAGCAATCGTCAACTTTCCTTTTC
gi|24 : ttagaaaT-T-CATA-CTTTG-TT--AC-T--TCGCC-ATTTT
gi|25 : TTTTCGTACT-A--GAT-TTG-ACGACGGA-CAATCCCGtatatttagc
gi|26 : ATA-CTTTG-TT--AC-T--TCGCC-ATTTTA
gi|27 : TCG-CTATAATGAC--CGTG----TTTGCTAT-TACAAAtattaaac
gi|3 : AAACGTGACGACTTTGACTTTGACTTTGCAATCGTCAACTTTCTTTTTCTATGTAGTAATGTACCACTATCACCTGC-GTATGATGGGTCT-CTCTCTC-AGT-TGATTCGCAATA-GTATG----G-CATCCGTGTGAGAACGTTTT-TAAAG-CAAG-G-CAAGCTACTAACAAAAAAGTTGATGTTTGCAAGGTGA-TCACGAAT---------A-TCGTTTAAA-A--TAAT-AATTTCGCAAAT-TCT-AC-GGTCGCCTATAATGAC--CTGT----TTTGTGAT-TACAA-----ATCACT----ATTA--GTCA-T-ATG-----TTGACTGATTTGTTTCAAACCCTT----------------TA--TTAGACT-------------------GTCATTTTCGCACT-T--AAT-TTG-ATGACGGG-TTA-CCCGTTT-ACTA---TGTT-TCGACTATGGGCTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACTTTTC---------------------------TTT-TAGTCGAAGG-TAAGTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-ATG---g
gi|4 : TGCAGGGTTAACAACGAA-C--------ACTCGTTT--ACA--TCATCAATT-CGCAAAT-T---AT-GGTCG-CTA--ATGAC---TTG----TTTGCGGT-TACAAATT--ATT--C----A--A--GTCA-TTATG-----TTGACTGAT-------------TT----------------TG--T-----TTATACCCTTTGTTAAGACTGTAATTTTCGTACT-A--TCT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTTATCGACTACGGGCTCATCGGCGTGTGTGACGCGCTAGCGAGGGATGCTTAACTCCTCTATGGCA-CCATGATCCTG-CTTC-G-CTT-TTGTCGAAGGTTTCGTGTTCGCCT------CAC-T-CG--GTGTT-TG--T-A---T-GTGTTTTTTT--------T-GG-----------------------A----A-CTA--TGATATACA---TTAT-AATA-CCTTT-GT--A--T--TCG-C-ATTT
gi|5 : GGACGAATAAAT-AATTTACCGTAT-TGATACTCGATTCT-AAACTTCACAAAACCCCTTAT----------TGTATCTAATGGTTCA--AGT-AA-ATGTTCTATCTAGCTCCTATC-TCT--GCTACTCGCGA-AGAAT-AT-----------CAATAG---------------------CT-GTGCCGCAACATATGCCAG-AAGTGGTG-TCAATCA--TGTGGA----------GATTCTAAA-AATT------------AAGT---------------TTCCCCAA-ACCA-ACA-CAT-CAAA------CGTATGATTTTTCTACACTTTGCACTAGTGA-ACAGCCATTCCTTACGAATAATCAAAGGC-TAGGCTCT-TTGACATCATAGAA-AGTTGCTTCCTTAAT---AAT-GAAAAAGGAAATTATAagta
gi|6 : aGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAAGT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TTGTTTCATACCATTTGTTAGAC-----T-------------------GTCATTTTCATACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACAGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTGCCTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-TG-----------------------G----A-CTA--TGAT-TACG---TT-T-CATA-CTTTG-TT--AC-T--TCGCC-ATTTTA
gi|7 : GTTA-TAACCAATT--------A-TCGTTT--A-A--TCATCAATTTCGCAAATGTCTGACTGGTTC-TTATAATGGCCTCTTGCTCTCTCGCACTGTACAGATTTAGTCTCTGTCGA--ATTGTCA-T-GTGAGCCTCTGAT--AT-------------GT----------------CA--TAGC--T-------------------CTCATTTCC-TACT-ATTGATCTTG-AC-ACGGGTTAATCCCGTTTAACTTACATATT-TCtattg
gi|8 : -ACTCCTC-ATGGCATCC-TGATCCTA-CATC-A-CTTATCGTCGAAGG-T-CGTGTTGCCCAAGTCGCCAC-TCCGGCAT-TT-TG--TAA---TGGTG---TTTT--------T-GGGGGGGGGGGGGGGGGGGTGGGGGG----A-CTAAGTGAT-T-CGGGTTT-C-GATA-ACTTG-TT--AC-TCCTCGCC-ATTTT
gi|9 : -CGGCGG-TGTGACCGGTCAGCAGA-GATGCTT-ACTCCTCCATGGCA-CC-TGATCCTACCTTC-G-CTT-TTGTCGGAGG-TCCGTGTTGCCCTA-----CGC-T-CG--AT-TT-TG--T-A---T-ATG---TTTT----------------------------------------ATTTA--TGAT-TACG---TT-T-GACA-CATT---------T--TCGCC-TTTTTtatatgtac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAGTCCGTAGATTGACTGATTTGTTTCATACCATTTGTTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 1111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 11 11 11 1 1 11 2222222 11 1 1 2222 11 11 1 2222 1 1 111 2222 1 1 111 22222 22222222222222222222222222222222222222222222 1 1 1 4444444 0000000000000000000000000000000 1 1 1 1 444444 11 4444444444444 2222 1 11 111 1 1 11 22222 111 1 222 1 11 1 1 1 22222 1 2222 222 1 2222 1 1 222 1 33333333 222 1 222 1 1 11 1 11 1 1 1 1 1 1 1 1 2222 1 1 11 33333333 11 11 11 1 11 11 444444 1 1 1 222 1 1 444444444444 1111111 1 11111 1 1111 2222222222 11111 44444444444444444444444444444444444444444444444444444444444444 111 11 1 111111 5555555555555555555555555555555555555555
lowQualScore : 1 5 5 88 1 1 88 1 1 88 77 1 1 5 5 1 88 8888888 88 5 1 5 1 1 1 4444 1 77 88 5 3 2222 3 2 1 6 444 1 8 0 3333 0 5 3 3 8 111 66666 11111111111111111111111111111111111111111111 1 0 0 1 2 6 1111111 999 6 4444444444444444444444444444444 3 3 2 3 000000 7 7 11 9999999999999 1 2222 3 1 1 44 7 000 3 22 5 88 77777 888 5 111 5 88 5 1 1 5 1 5 1 66666 5 1 4444 111 5 3333 5 1 22 1 1 5 1 1 111 5 33333333 2 1 111 22 5 111 5 5 88 5 88 1 5 5 5 5 1 5 5 5 5 5555 5 5 88 6 6 44444444 6 6 0 7 44 1 44 44 3 88 44 1 222222 1 3 1 3 3 555 3 1 7 0 777777777777 9999999 2 5 00000 0 6 99 4444 6 99 3 2222222222 6 6 66666 2 44444444444444444444444444444444444444444444444444444444444444 3 1 5 66 5 5 4 0 5 777 6 5 2 3 5 66 4 4 3 666 4 2 4 2 6 777777 3 7 55 7 3 44 3 555 3 666 0000000000000000000000000000000000000000 3 55 3 1 666 7777 3 2 3 44 3 44 3
lowQualScore : . . . .. . . .. . . .. .. . . . . . .. ....... .. . . . . . . .... . .. .. . . .... . . . . ... . . . .... . . . . . ... ..... ............................................ . . . . . . ....... ... . ............................... . . . . ...... . . .. ............. . .... . . . .. . ... . .. . .. ..... ... . ... . .. . . . . . . . ..... . . .... ... . .... . . .. . . . . . ... . ........ . . ... .. . ... . . .. . .. . . . . . . . . . . .... . . .. . . ........ . . . . .. . .. .. . .. .. . ...... . . . . . ... . . . . ............ ....... . . ..... . . .. .... . .. . .......... . . ..... . .............................................................. . . . .. . . . . . ... . . . . . .. . . . ... . . . . . ...... . . .. . . .. . ... . ... ........................................ . .. . . ... .... . . . .. . .. .
lowQualScore : 0 0 5 55 0 0 55 0 0 55 55 0 0 5 5 0 55 0000000 00 5 0 0 0 0 0 0000 0 55 00 0 7 7777 3 0 0 7 333 4 0 6 2222 0 5 2 2 0 888 00000 33333333333333333333333333333333333333333333 0 0 0 0 0 7 3333333 333 7 3333333333333333333333333333333 3 3 0 3 777777 3 3 00 7777777777777 0 0000 3 0 0 33 3 000 3 00 5 00 00000 555 0 000 0 55 0 0 0 0 0 5 0 55555 0 0 0000 555 5 5555 0 0 00 0 0 0 0 0 555 5 00000000 5 0 000 00 0 000 0 5 00 0 55 0 0 0 0 0 0 0 0 0 5 0000 0 0 55 7 5 55555555 7 7 7 3 33 0 00 77 3 33 00 0 000000 0 3 0 3 3 000 3 0 3 0 000000000000 5555555 5 5 55555 0 7 22 2222 7 22 5 7777777777 7 7 77777 5 88888888888888888888888888888888888888888888888888888888888888 6 7 0 99 0 0 4 9 7 999 7 7 5 0 0 99 4 4 3 222 4 7 4 9 7 111111 6 3 00 3 6 66 3 888 3 444 3333333333333333333333333333333333333333 6 00 6 3 444 9999 1 1 1 22 1 22 3
consensus : NTGGCTCCAGCCGACAAAGCNGGTAACAACATTGGTCTTTGCTTGTAAAAGNCNCCATTATACAACTGCNTTTTAAACGAACTNGGGTTTACTTCACCACATCTGGNANTTCCTACTTACACTTCCANGCAATCTGACTTCAAAAGACGAAATTCTTCAAAATNATGCTTTCNGTTTTGAACACNTTNATATCACANTCCGAATGGGATCGGGACGAATA--T-AATT-ACCGTACCTATACTGGATTCCGAAACTTCATAAAANCCCTTACAA-ACAAAGATGCATC-GCTGGTTCA--AGT-AATGTGTTCTACCAAGCCCCTATC-TTT--ACTCCTCGCNAGAAAAT-ATTGA-TAGCT-TCAATAGA-CCAC---TT-CA-GAGGTACT-ATGCCACNACATATGCCAG-AAGTGGTG-TNAATCAGATGTGGATT--C--AAAAACTCCAAAGAATTT-TGG--AA---AANTCCAG-------GACCTTTCCAAA-ATCA-ACAGCAT-CAAAA-----CGTATGATTTTTCAACACTTTGCACT--TGAGACA--CATTCCTCACGATNAATTAAAGGCATAGGCTTT-TTNACATNATAGAN-AGTTGCTTCTTTAACAAAAATGGAAAAAGGAAA-TATANNTATTCCATGATCAAGCCATTNGGAAACAAGATACACATTTTGTCAGAAGTTCCACTCTGATCGCCCANACAAGTACTCTGAAGTNGATGTCAANAGCAATNCTCGGGTTTCTTGGACGATACTTTNTGTATTTGGCCTTTAATAGGCCGTGACTTCCAGACAGTNTNNTGGNATTCCNGTGGGCACNAATNGTGTTACCACCCTTGGCGTGGCCTTCGCAGNCTTATTTTCATANNCATACGGAGCGAGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGCAGAACGAGATGTCTTATCATAATTANTCAATCATAATTTTCACCAATTATGTCCATTTGATATATCCTGACGAACCCGACAATAAAANACACCACAGAATCATGACAGATGTGCTTCGATATTCTGGATATTTTACTTAATATTGACTCCAATGGCAGACTGACAACTGCAAATTATATGGATAAACGTGA------TGACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCGCTATCGCCTT-TTTATGATGNGTAC-GTCTCTCAAGT-TGATTCG--ATACGNAAGGGC-G-CATGCGTATGANAAT-TTNT-TAAAG-CGAG-G-CAA-CTACTAACCAAAAAGNTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A--TCATCAATTTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTTCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTG-CTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-GATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
Reference ( family-914 ) : NTGGCTCCAGCCGACAAAGCNGGTAACAACATTGGTCTTTGCTTGTAAAAGNCNCCATTATACAACTGCNTTTTAAACGAACTNGGGTTTACTTCACCACATCTGGNANTTCCTACTTACACTTCCANGCAATCTGACTTCAAAAGACGAAATTCTTCAAAATNATGCTTTCNGTTTTGAACACNTTNATATCACANTCCGAATGGGATCGGGACGAATA--T-AATT-ACCGTACCTATACTGGATTCCGAAACTTCATAAAANCCCTTACAA-ACAAAGATGCATC-GCTGGTTCA--AGT-AATGTGTTCTACCAAGCCCCTATC-TTT--ACTCCTCGCNAGAAAAT-ATTGA-TAGCT-TCAATAGA-CCAC---TT-CA-GAGGTACT-ATGCCACNACATATGCCAG-AAGTGGTG-TNAATCAGATGTGGATT--C--AAAAACTCCAAAGAATTT-TGG--AA---AANTCCAG-------GACCTTTCCAAA-ATCA-ACAGCAT-CAAAA-----CGTATGATTTTTCAACACTTTGCACT--TGAGACA--CATTCCTCACGATNAATTAAAGGCATAGGCTTT-TTNACATNATAGAN-AGTTGCTTCTTTAACAAAAATGGAAAAAGGAAA-TATANNTATTCCATGATCAAGCCATTNGGAAACAAGATACACATTTTGTCAGAAGTTCCACTCTGATCGCCCANACAAGTACTCTGAAGTNGATGTCAANAGCAATNCTCGGGTTTCTTGGACGATACTTTNTGTATTTGGCCTTTAATAGGCCGTGACTTCCAGACAGTNTNNTGGNATTCCNGTGGGCACNAATNGTGTTACCACCCTTGGCGTGGCCTTCGCAGNCTTATTTTCATANNCATACGGAGCGAGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGCAGAACGAGATGTCTTATCATAATTANTCAATCATAATTTTCACCAATTATGTCCATTTGATATATCCTGACGAACCCGACAATAAAANACACCACAGAATCATGACAGATGTGCTTCGATATTCTGGATATTTTACTTAATATTGACTCCAATGGCAGACTGACAACTGCAAATTATATGGATAAACGTGA------TGACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCGCTATCGCCTT-NTTATGATGNGTAC-GTCTCTCAAGT-TGATTCG--ATACGNAAGGGC-G-CATGCGTATGANAAT-TTNT-TAAAG-CGAG-G-CAA-CTACTAACCAAAAAGNTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A--TCATCAATTTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTTCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTG-CTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-GATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
gi|1 : TAGTTCCAGCTGATAAAGCAAGTAACAACATTG-TCTTTGTTTGTAAAAGTCACTATTATAC--TTGTCTTTTAAATGAACTAGGGTTTACTTCA--ACATCTGGGAAT-CCTACTTATACT-CCAAGCAATCTGACT---AAAGATGAAATTCTTCAAAATCAT-CTTTCTGTTTTGAATACTTTCA----ACATTCCGAA--GAATCAGGATCAATT--TGAATT-ACCATACCTTTACTGGATTCCGAAATTGCATAAGAATCCTTACAA-ACAAAGATGCATC-GCTGGTTCC--AGG-AA-GTGCTCTACCAAGCGTCTATC-CTT--AATACTAACTA--AACT-ACGAA-TAGCTGTTAA-AGAGTCAC---TT-CA-GAGATACT-ATTCCACTACATATTCCAG-AAGTGGTG-TCAATCAGATGTGGATT--CTCAAAAACTCCAAAGAGGTTATAG--AA---AACTCCAGTTCACGAGATTTTTCTAAA-ATTA-ACTGCAT-CAAAA-----CGTATGATTTCTCAACACCT----CT--TAAAACA---ATTCTTCACGATGAATTAAAA-TATAGGCTTT-TTCAGATAATTGAC-AAATGCTTTTTGAACAAAAACGGCACCCGAAAA-TACAAGT-TTC--TG-----GTCATTGGGAAACAAGATACATATTTTGTCAGAAA--CCACTCTGATCGCCCACACAAGTACTCTGAAGTAGATATCAAGAGCA-TGCTTGGGTTTCTTAGATGATA-TTTATGTA----GCCTTTAA-AGACCGTGACTTCCA-ACAATATGGTGGTATTCCTATGGGCACTAATGGTG---CC-CCCTTA--------TTGGCAGACTTATTTTCATATTCATACGAAGC-AGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGTAGA-CGA--TGTCTTATCA--ATTAAT-AATCATAATTTTCAC-AATTATGTCCATTTGATATATCCTGACGAACTCGA-AATAAAACACACTACAAAAT-ATGACAGATATGCTTC-ATATT-TGGATATTTTACTTAATATTGACTCCAATGGCAGACTGATAACTACA--TTATATG-ATAAACGTGA------TGACTTTGACTTTGGAATCGTCAACTTTACTTTTCTATGTAGTAATATACCGCTGTCGCTTT-TTTATGGTGAGTAT-GTCTCTTA-GT-TGATTCG--ATACGCAAGGGC----ATGCGTATGGAAAT-TTAT-TAAAG-CGAG-GACAA-CCACTAACCAAAAAGATGATGTT-GCAGGGTTA-TAACGAATCTCGTTTATA-TCGTTT--A-AAATCATCAATT-CGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGGCT----------------------------------TA--T-----T---------------------CATTTG-GTACA-A--GAT-TTG-ACAACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGTTGTGACCGGTCAGCAGATGATGCTT-ACTCCTTCCTGGCA-CC-TGCTCCTGATTTC-G-CTA-TTTTCGAAGG-TCTGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTTA-------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-AATA-TTTCG-AT--AC-T--TCGCC-ATTTTA
gi|10 : cGTCAGCAGAAGATACTT-ACTCCT-------A-CC-TGATCCTG-TTTTTG-CTT-TTGTTGGAAG-TCCGTGTTGCCCTG-----CAC-T-CC--AC-TT-TGTAT-A---T-ATG---TTTT--------T-GG-----------------------G----T-CTA--TGAT-TACG---TT-T-AACA-CATTGTTT--GC-T--TAGCC-AATTTA
gi|11 : A-TC-TGATCCTG-CTTC-GTCTT-TC--CGAGGT-CCCGTGTTCCCCT------CAC-TCCG--ATGTT-TG--A-A---T-GTA---TTTTTTTTCCTCT-TT-----------------------T----A-CTA--TGA--TAC-----T-T-ATTA-CTTT--TT--AC-T--T--CC-ATTTtata
gi|12 : ttaacgcgctctgcagctgcatcaTT--ATTAGT----A------TCAGT-GCG-----TT--CTGTC-------------TT----------------AA--C-----T-------------------GTCATTT-CATACTTA--GAT-TTGGACGACGTG-TAACCCTGTgta
gi|13 : tcacttaagtatcatatgtgcgagctgaaggatGCCCCTAGT-TTT--GCTCCTCG--AGAAAAT-------TAACT--------A---AC---TT-AA----------ATGCCATAACATATGCCAT-AAGTGGTT-TAAAT
gi|14 : CCCTA-----CACGT-CG--AT-TTCTG--T-AGCTT-G-G---TTTT--------T-GG-----------------------GGGTAA-CTA--TGAT-TGCG---TT-TCGATA-CATTG-TTTAAC-T--TCGCaaacaaaaaatgatcctaaaaatt
gi|15 : ttTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACTTTTC---------------------------TTT-TAGTCGAAGG-TAAGTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-gcttattatattg
gi|16 : -ACAAAGATTCATT-GCGGATTTAGTAATGAATGTGTTCCGTCAAG-CCCTGTCATTTAAACTCCTCACG-GAAAGTGATTGA-CAGTT-a
gi|17 : --T-A---T-ACG---TTTT--------T-TG-----------------------G----A-CTA--TATT-CAAG---TT---GATA-CTTTG-TT--ACTT--TCGGC-ATTTTA
gi|18 : -ACAAAGATACATC-GCTGGTTtcattaagc
gi|18 : tGG-TTACCCTGTTT-ACTAAA-TGTT-TCGACTACGGGCTCA-Caccctgtttactaaatgtttcgactacgggctcac
gi|19 : tacaaagatacatcgctG-----------------------G----A-ATA--TGAT--ACG---TT-T-AATAACATTG-TT--AC-T--TCGCCAATTTTA
gi|2 : tTGGCTCCAGCCGACAAAGCTGGTAACAATATTGGTTTTTGCT-GTAA--GGCTTCATTATACAACTGCATTTTAAACGAACTTGGGT--ACTTCACCACATTTGGTATTTCCTACTTACACTTCCATGC--TCT--TTTCAAAAGAC--AATTCT-CAAAATAATGCTTTCAGTTTTAAACACATTAATATCACAGTC--AATGGGAT-GGGAAGAATA--T-AACA-ACCGTACCTATACTGGATTCCAAAACTTTCTAAAATCC--TACAATACAAAGATATATT-GCGGATT----AGT-AATGTAT-CTACCA-GCCACTGTC-TT---ACTCCTC--CAGAAAAT-ATTGACTAGCT-TCAATAGA-CCACAACTTACAAGAAGTATTTATGAAACTACATATGCCAGGAAGTGGTGGTAAATCAAATGTG-ATTAAC--AAAAAC---ATAGAATTTCTGGTGAATGGAATTCCAG-------AACCTTTCCACATATCATACAACATTCAAAAACAACCG-A-GACTTTTCAACACTTTACAC-----GGAC---CATCCCACACGCTAAATTAAAGACA-AGTCTTTGTTAACATTATAGAGCAGTTGCTTCTTTAACAAAA-TGGAAAAAGGAAA-TATACTTATTCCATGATCAAGCCATTC--AAA-AAAAT---CATTTTGTTA-AAGTTCCACTCTGATT-CTCAAACAAGTACTCTGAAGTTGATGT-AACAGCAATCCTCAA-----TTGGACAATACTTTTTGTATTTGGCC---AATAGGTC----TTTCCAGACAGTCTTCTGGAATTCCAGT-GGCACGAATTATGTTACCACCCTTGGCGTGGCCTTCACAGCCTTATT---ATAGGTATACAGAACGAGA---TGTTTAtattgggaca
gi|2 : CAGCCTTA-TTATAGGTATACAGAACGAGATGT-TTATCATAATTACTCAATCATAATTTTCACCAATTATGTCCATTT-ATATATCCTGACGAACCCGACAATAAAAAACACCACAGAATCATGACAGATGTGCTTTGATATTCTGGATATTT-ACT--A-ATTGACTC-AATG-CAGACTGACAACTGCAAATTATATGGATAAATGTGA------TTACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTA-TAATGTA-CACTA-CGCCTTGTTTAGGATGTGTACAGTCTCTCAAGTCTGATTCG--AT-CAGAAGGACTGCCATGCGTATGATTAT-TTGTATAAAGTCGAGTC-CAA-CTACTAACCAAAAAtcataattactcaatcataattttcaccaattatgtccatttatatatcctgacgaacccgacaataaaaaacaccacagaatcatgacagatgtgctttgatattctggatatttactaattgactcaatgcagactgacaactgcaaattatatggataaatgtgattactttgactttgcaatcgtcaactttccttttctatgtataatgtacactacgccttgtttaggatgtgtacagtctctcaagtctgattcgatcagaaggactgccatgcgtatgattatttgtataaagtcgagtccaactactaaccaaaaa
gi|20 : tggctccagccgacaaagctggtaacaatattggtttttgctgtaaggcttcattatacaactgcattttaaacgaacttgggtacttcaccacatttggtatttcctacttacacttccatgctcttttcaaaagacaattctcaaaataatgctttcagttttaaacacattaatatcacagtcaatgggatgggaagaatataacaaccgtacctatactggattccaaaactttctaaaatcctacaatacaaagatatattgcggattagtaatgtatctaccagccactgtcttactcctccagaaaatattgactagcttcaatagaccacaacttacaagaagtatttatgaaactacatatgccaggaagtggtggtaaatcaaatgtgattaacaaaaacatagaatttctggtgaatggaattccagaacctttccacatatcatacaacattcaaaaacaaccgagacttttcaacactttacacggaccatcccacacgctaaattaaagacaagtctttgttaacattatagagcagttgcttctttaacaaaatggaaaaaggaaatatacttattccatgatcaagccattcaaaaaaatcattttgttaaagttccactctgattctcaaacaagtactctgaagttgatgtaacagcaatcctcaattggacaatactttttgtatttggccaataggtctttccagacagtcttctggaattccagtggcacgaattatgttaccacccttggcgtggccttcaC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------TTGG-----------------------G----A-CTA--TGAT-T--------------------G-TT--CC-T--TCGCC-ATTTTA
gi|21 : -A--AAT-TTG-ACGACGGG-TAATCCCGTTT-ACTT---ta
gi|22 : aggttattattttctcaaaaagGATAAA--TGA--------AATTTGACTTAGCAATCGTCAACTTTCCTTTTC
gi|24 : ttagaaaT-T-CATA-CTTTG-TT--AC-T--TCGCC-ATTTT
gi|25 : TTTTCGTACT-A--GAT-TTG-ACGACGGA-CAATCCCGtatatttagc
gi|26 : ATA-CTTTG-TT--AC-T--TCGCC-ATTTTA
gi|27 : TCG-CTATAATGAC--CGTG----TTTGCTAT-TACAAAtattaaac
gi|3 : AAACGTGACGACTTTGACTTTGACTTTGCAATCGTCAACTTTCTTTTTCTATGTAGTAATGTACCACTATCACCTG-CGTATGATGGGTCT-CTCTCTC-AGT-TGATTCGCAATA-GTATG----G-CATCCGTGTGAGAACGTTTT-TAAAG-CAAG-G-CAAGCTACTAACAAAAAAGTTGATGTTTGCAAGGTGA-TCACGAAT---------A-TCGTTTAAA-A--TAAT-AATTTCGCAAAT-TCT-AC-GGTCGCCTATAATGAC--CTGT----TTTGTGAT-TACAA-----ATCACT----ATTA--GTCA-T-ATG-----TTGACTGATTTGTTTCAAACCCTT----------------TA--TTAGACT-------------------GTCATTTTCGCACT-T--AAT-TTG-ATGACGGG-TTA-CCCGTTT-ACTA---TGTT-TCGACTATGGGCTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACTTTTC---------------------------TTT-TAGTCGAAGG-TAAGTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-ATG---g
gi|4 : TGCAGGGTTAACAACGAA-C--------ACTCGTTT--ACA--TCATCAATT-CGCAAAT-T---AT-GGTCG-CTA--ATGAC---TTG----TTTGCGGT-TACAAATT--ATT--C----A--A--GTCA-TTATG-----TTGACTGAT-------------TT----------------TG--T-----TTATACCCTTTGTTAAGACTGTAATTTTCGTACT-A--TCT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTTATCGACTACGGGCTCATCGGCGTGTGTGACGCGCTAGCGAGGGATGCTTAACTCCTCTATGGCA-CCATGATCCTG-CTTC-G-CTT-TTGTCGAAGGTTTCGTGTTCGCCT------CAC-T-CG--GTGTT-TG--T-A---T-GTGTTTTTTT--------T-GG-----------------------A----A-CTA--TGATATACA---TTAT-AATA-CCTTT-GT--A--T--TCG-C-ATTT
gi|5 : GGACGAATAAAT-AATTTACCGTATTGATACTCGATTCT-AAACTTCACAAAACCCCTTAT----------TGTATCTAATGGTTCA--AGT-AA-ATGTTCTATCTAGCTCCTATC-TCT--GCTACTCGCGA-AGAAT-AT-----------CAATAG---------------------CT-GTGCCGCAACATATGCCAG-AAGTGGTG-TCAATCA--TGTGGA----------GATTCTAAA-AATT------------AAGT---------------TTCCCCAA-ACCA-ACA-CAT-CAAA------CGTATGATTTTTCTACACTTTGCACTAGTGA-ACAGCCATTCCTTACGAATAATCAAAGGC-TAGGCTCT-TTGACATCATAGAA-AGTTGCTTCCTTAAT---AAT-GAAAAAGGAAATTATAagta
gi|6 : aGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAAGT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TTGTTTCATACCATTTGTTAGAC-----T-------------------GTCATTTTCATACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACAGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTGCCTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-TG-----------------------G----A-CTA--TGAT-TACG---TT-T-CATA-CTTTG-TT--AC-T--TCGCC-ATTTTA
gi|7 : GTTA-TAACCAATT--------A-TCGTTT--A-A--TCATCAATTTCGCAAATGTCTGACTGGTTC-TTATAATGGCCTCTTGCTCTCTCGCACTGTACAGATTTAGTCTCTGTCGA--ATTGTCA-T-GTGAGCCTCTGAT--AT-------------GT----------------CA--TAGC--T-------------------CTCATTTCC-TACT-ATTGATCTTG-AC-ACGGGTTAATCCCGTTTAACTTACATATT-TCtattg
gi|8 : -ACTCCTC-ATGGCATCC-TGATCCTA-CATC-A-CTTATCGTCGAAGG-T-CGTGTTGCCCAAGTCGCCAC-TCCGGCAT-TT-TG--TAA---TGGTG---TTTT--------T-GGGGGGGGGGGGGGGGGGGTGGGGGG----A-CTAAGTGAT-T-CGGGTTT-C-GATA-ACTTG-TT--AC-TCCTCGCC-ATTTT
gi|9 : -CGGCGG-TGTGACCGGTCAGCAGA-GATGCTT-ACTCCTCCATGGCA-CC-TGATCCTACCTTC-G-CTT-TTGTCGGAGG-TCCGTGTTGCCCTA-----CGC-T-CG--AT-TT-TG--T-A---T-ATG---TTTT----------------------------------------ATTTA--TGAT-TACG---TT-T-GACA-CATT---------T--TCGCC-TTTTTtatatgtac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAGTCCGTAGATTGACTGATTTGTTTCATACCATTTGTTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 1111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 11 11 11 1 1 11 2222222 11 1 1 2222 11 11 1 2222 1 1 111 2222 1 1 111 22222 22222222222222222222222222222222222222222222 1 1 1 4444444 0000000000000000000000000000000 1 1 1 1 444444 11 4444444444444 2222 1 11 111 1 1 11 22222 111 1 222 1 11 1 1 1 22222 1 2222 222 1 2222 1 1 222 1 33333333 222 1 222 1 1 11 1 11 1 1 1 1 1 1 1 1 2222 1 1 11 33333333 1 11 11 1 11 11 444444 1 1 1 222 1 1 444444444444 1111111 1 11111 1 1111 2222222222 11111 44444444444444444444444444444444444444444444444444444444444444 111 11 1 111111 5555555555555555555555555555555555555555
lowQualScore : 1 5 5 88 1 1 88 1 1 88 77 1 1 5 5 1 88 8888888 88 5 1 5 1 1 1 4444 1 77 88 5 3 2222 3 2 1 6 444 1 8 0 3333 0 5 3 3 8 111 66666 11111111111111111111111111111111111111111111 1 0 0 1 2 6 1111111 999 6 4444444444444444444444444444444 3 3 2 3 000000 7 7 11 9999999999999 1 2222 3 1 1 44 7 000 3 22 5 88 77777 888 5 111 5 88 5 1 1 5 1 5 1 66666 5 1 4444 111 5 3333 5 1 22 1 1 5 1 1 111 5 33333333 2 1 111 22 5 111 5 5 88 5 88 1 5 5 5 5 1 5 5 5 5 5555 5 5 88 6 6 44444444 6 6 0 7 3 1 44 44 3 88 44 1 222222 1 3 1 3 3 555 3 1 7 0 777777777777 9999999 2 5 00000 0 6 99 4444 6 99 3 2222222222 6 6 66666 2 44444444444444444444444444444444444444444444444444444444444444 3 1 5 66 5 5 4 0 5 777 6 5 2 3 5 66 4 4 3 666 4 2 4 2 6 777777 3 7 55 7 3 44 3 555 3 666 0000000000000000000000000000000000000000 3 55 3 1 666 7777 3 2 3 44 3 44 3
lowQualScore : . . . .. . . .. . . .. .. . . . . . .. ....... .. . . . . . . .... . .. .. . . .... . . . . ... . . . .... . . . . . ... ..... ............................................ . . . . . . ....... ... . ............................... . . . . ...... . . .. ............. . .... . . . .. . ... . .. . .. ..... ... . ... . .. . . . . . . . ..... . . .... ... . .... . . .. . . . . . ... . ........ . . ... .. . ... . . .. . .. . . . . . . . . . . .... . . .. . . ........ . . . . . . .. .. . .. .. . ...... . . . . . ... . . . . ............ ....... . . ..... . . .. .... . .. . .......... . . ..... . .............................................................. . . . .. . . . . . ... . . . . . .. . . . ... . . . . . ...... . . .. . . .. . ... . ... ........................................ . .. . . ... .... . . . .. . .. .
lowQualScore : 0 0 5 55 0 0 55 0 0 55 55 0 0 5 5 0 55 0000000 00 5 0 0 0 0 0 0000 0 55 00 0 7 7777 3 0 0 7 333 4 0 6 2222 0 5 2 2 0 888 00000 33333333333333333333333333333333333333333333 0 0 0 0 0 7 3333333 333 7 3333333333333333333333333333333 3 3 0 3 777777 3 3 00 7777777777777 0 0000 3 0 0 33 3 000 3 00 5 00 00000 555 0 000 0 55 0 0 0 0 0 5 0 55555 0 0 0000 555 5 5555 0 0 00 0 0 0 0 0 555 5 00000000 5 0 000 00 0 000 0 5 00 0 55 0 0 0 0 0 0 0 0 0 5 0000 0 0 55 7 5 55555555 7 7 7 3 3 0 00 77 3 33 00 0 000000 0 3 0 3 3 000 3 0 3 0 000000000000 5555555 5 5 55555 0 7 22 2222 7 22 5 7777777777 7 7 77777 5 88888888888888888888888888888888888888888888888888888888888888 6 7 0 99 0 0 4 9 7 999 7 7 5 0 0 99 4 4 3 222 4 7 4 9 7 111111 6 3 00 3 6 66 3 888 3 444 3333333333333333333333333333333333333333 6 00 6 3 444 9999 1 1 1 22 1 22 3
consensus : NTGGCTCCAGCCGACAAAGCNGGTAACAACATTGGTCTTTGCTTGTAAAAGNCNCCATTATACAACTGCNTTTTAAACGAACTNGGGTTTACTTCACCACATCTGGNANTTCCTACTTACACTTCCANGCAATCTGACTTCAAAAGACGAAATTCTTCAAAATNATGCTTTCNGTTTTGAACACNTTNATATCACANTCCGAATGGGATCGGGACGAATA--T-AATT-ACCGTACCTATACTGGATTCCGAAACTTCATAAAANCCCTTACAA-ACAAAGATGCATC-GCTGGTTCA--AGT-AATGTGTTCTACCAAGCCCCTATC-TTT--ACTCCTCGCNAGAAAAT-ATTGA-TAGCT-TCAATAGA-CCAC---TT-CA-GAGGTACT-ATGCCACNACATATGCCAG-AAGTGGTG-TNAATCAGATGTGGATT--C--AAAAACTCCAAAGAATTT-TGG--AA---AANTCCAG-------GACCTTTCCAAA-ATCA-ACAGCAT-CAAAA-----CGTATGATTTTTCAACACTTTGCACT--TGAGACA--CATTCCTCACGATNAATTAAAGGCATAGGCTTT-TTNACATNATAGAN-AGTTGCTTCTTTAACAAAAATGGAAAAAGGAAA-TATANNTATTCCATGATCAAGCCATTNGGAAACAAGATACACATTTTGTCAGAAGTTCCACTCTGATCGCCCANACAAGTACTCTGAAGTNGATGTCAANAGCAATNCTCGGGTTTCTTGGACGATACTTTNTGTATTTGGCCTTTAATAGGCCGTGACTTCCAGACAGTNTNNTGGNATTCCNGTGGGCACNAATNGTGTTACCACCCTTGGCGTGGCCTTCGCAGNCTTATTTTCATANNCATACGGAGCGAGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGCAGAACGAGATGTCTTATCATAATTANTCAATCATAATTTTCACCAATTATGTCCATTTGATATATCCTGACGAACCCGACAATAAAANACACCACAGAATCATGACAGATGTGCTTCGATATTCTGGATATTTTACTTAATATTGACTCCAATGGCAGACTGACAACTGCAAATTATATGGATAAACGTGA------TGACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCGCTATCGCCTT-TTTATGATGNGTAC-GTCTCTCAAGT-TGATTCG--ATACGNAAGGGC-G-CATGCGTATGANAAT-TTNT-TAAAG-CGAG-G-CAA-CTACTAACCAAAAAGNTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A--TCATCAATTTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTTCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTG-CTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-GATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
Reference ( family-914 ) : NTGGCTCCAGCCGACAAAGCNGGTAACAACATTGGTCTTTGCTTGTAAAAGNCNCCATTATACAACTGCNTTTTAAACGAACTNGGGTTTACTTCACCACATCTGGNANTTCCTACTTACACTTCCANGCAATCTGACTTCAAAAGACGAAATTCTTCAAAATNATGCTTTCNGTTTTGAACACNTTNATATCACANTCCGAATGGGATCGGGACGAATA--T-AATT-ACCGTACCTATACTGGATTCCGAAACTTCATAAAANCCCTTACAA-ACAAAGATGCATC-GCTGGTTCA--AGT-AATGTGTTCTACCAAGCCCCTATC-TTT--ACTCCTCGCNAGAAAAT-ATTGA-TAGCT-TCAATAGA-CCAC---TT-CA-GAGGTACT-ATGCCACNACATATGCCAG-AAGTGGTG-TNAATCAGATGTGGATT--C--AAAAACTCCAAAGAATTT-TGG--AA---AANTCCAG-------GACCTTTCCAAA-ATCA-ACAGCAT-CAAAA-----CGTATGATTTTTCAACACTTTGCACT--TGAGACA--CATTCCTCACGATNAATTAAAGGCATAGGCTTT-TTNACATNATAGAN-AGTTGCTTCTTTAACAAAAATGGAAAAAGGAAA-TATANNTATTCCATGATCAAGCCATTNGGAAACAAGATACACATTTTGTCAGAAGTTCCACTCTGATCGCCCANACAAGTACTCTGAAGTNGATGTCAANAGCAATNCTCGGGTTTCTTGGACGATACTTTNTGTATTTGGCCTTTAATAGGCCGTGACTTCCAGACAGTNTNNTGGNATTCCNGTGGGCACNAATNGTGTTACCACCCTTGGCGTGGCCTTCGCAGNCTTATTTTCATANNCATACGGAGCGAGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGCAGAACGAGATGTCTTATCATAATTANTCAATCATAATTTTCACCAATTATGTCCATTTGATATATCCTGACGAACCCGACAATAAAANACACCACAGAATCATGACAGATGTGCTTCGATATTCTGGATATTTTACTTAATATTGACTCCAATGGCAGACTGACAACTGCAAATTATATGGATAAACGTGA------TGACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCGCTATCGCCTT-TTTATGATGNGTAC-GTCTCTCAAGT-TGATTCG--ATACGNAAGGGC-G-CATGCGTATGANAAT-TTNT-TAAAG-CGAG-G-CAA-CTACTAACCAAAAAGNTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A--TCATCAATTTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTTCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTG-CTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-GATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
gi|1 : TAGTTCCAGCTGATAAAGCAAGTAACAACATTG-TCTTTGTTTGTAAAAGTCACTATTATAC--TTGTCTTTTAAATGAACTAGGGTTTACTTCA--ACATCTGGGAAT-CCTACTTATACT-CCAAGCAATCTGACT---AAAGATGAAATTCTTCAAAATCAT-CTTTCTGTTTTGAATACTTTCA----ACATTCCGAA--GAATCAGGATCAATT--TGAATT-ACCATACCTTTACTGGATTCCGAAATTGCATAAGAATCCTTACAA-ACAAAGATGCATC-GCTGGTTCC--AGG-AA-GTGCTCTACCAAGCGTCTATC-CTT--AATACTAACTA--AACT-ACGAA-TAGCTGTTAA-AGAGTCAC---TT-CA-GAGATACT-ATTCCACTACATATTCCAG-AAGTGGTG-TCAATCAGATGTGGATT--CTCAAAAACTCCAAAGAGGTTATAG--AA---AACTCCAGTTCACGAGATTTTTCTAAA-ATTA-ACTGCAT-CAAAA-----CGTATGATTTCTCAACACCT----CT--TAAAACA---ATTCTTCACGATGAATTAAAA-TATAGGCTTT-TTCAGATAATTGAC-AAATGCTTTTTGAACAAAAACGGCACCCGAAAA-TACAAGT-TTC--TG-----GTCATTGGGAAACAAGATACATATTTTGTCAGAAA--CCACTCTGATCGCCCACACAAGTACTCTGAAGTAGATATCAAGAGCA-TGCTTGGGTTTCTTAGATGATA-TTTATGTA----GCCTTTAA-AGACCGTGACTTCCA-ACAATATGGTGGTATTCCTATGGGCACTAATGGTG---CC-CCCTTA--------TTGGCAGACTTATTTTCATATTCATACGAAGC-AGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGTAGA-CGA--TGTCTTATCA--ATTAAT-AATCATAATTTTCAC-AATTATGTCCATTTGATATATCCTGACGAACTCGA-AATAAAACACACTACAAAAT-ATGACAGATATGCTTC-ATATT-TGGATATTTTACTTAATATTGACTCCAATGGCAGACTGATAACTACA--TTATATG-ATAAACGTGA------TGACTTTGACTTTGGAATCGTCAACTTTACTTTTCTATGTAGTAATATACCGCTGTCGCTTT-TTTATGGTGAGTAT-GTCTCTTA-GT-TGATTCG--ATACGCAAGGGC----ATGCGTATGGAAAT-TTAT-TAAAG-CGAG-GACAA-CCACTAACCAAAAAGATGATGTT-GCAGGGTTA-TAACGAATCTCGTTTATA-TCGTTT--A-AAATCATCAATT-CGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGGCT----------------------------------TA--T-----T---------------------CATTTG-GTACA-A--GAT-TTG-ACAACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGTTGTGACCGGTCAGCAGATGATGCTT-ACTCCTTCCTGGCA-CC-TGCTCCTGATTTC-G-CTA-TTTTCGAAGG-TCTGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTTA-------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-AATA-TTTCG-AT--AC-T--TCGCC-ATTTTA
gi|10 : cGTCAGCAGAAGATACTT-ACTCCT-------A-CC-TGATCCTG-TTTTTG-CTT-TTGTTGGAAG-TCCGTGTTGCCCTG-----CAC-T-CC--AC-TT-TGTAT-A---T-ATG---TTTT--------T-GG-----------------------G----T-CTA--TGAT-TACG---TT-T-AACA-CATTGTTT--GC-T--TAGCC-AATTTA
gi|11 : A-TC-TGATCCTG-CTTC-GTCTT-TC--CGAGGT-CCCGTGTTCCCCT------CAC-TCCG--ATGTT-TG--A-A---T-GTA---TTTTTTTTCCTCT-TT-----------------------T----A-CTA--TGA--TAC-----T-T-ATTA-CTTT--TT--AC-T--T--CC-ATTTtata
gi|12 : ttaacgcgctctgcagctgcatcaTT--ATTAGT----A------TCAGT-GCG-----TT--CTGTC-------------TT----------------AA--C-----T-------------------GTCATTT-CATACTTA--GAT-TTGGACGACGTG-TAACCCTGTgta
gi|13 : tcacttaagtatcatatgtgcgagctgaaggatGCCCCTAGT-TTT--GCTCCTCG--AGAAAAT-------TAACT--------A---AC---TT-AA----------ATGCCATAACATATGCCAT-AAGTGGTT-TAAAT
gi|14 : CCCTA-----CACGT-CG--AT-TTCTG--T-AGCTT-G-G---TTTT--------T-GG-----------------------GGGTAA-CTA--TGAT-TGCG---TT-TCGATA-CATTG-TTTAAC-T--TCGCaaacaaaaaatgatcctaaaaatt
gi|15 : ttTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACTTTTC---------------------------TTT-TAGTCGAAGG-TAAGTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-gcttattatattg
gi|16 : -ACAAAGATTCATT-GCGGATTTAGTAATGAATGTGTTCCGTCAAG-CCCTGTCATTTAAACTCCTCACG-GAAAGTGATTGA-CAGTT-a
gi|17 : --T-A---T-ACG---TTTT--------T-TG-----------------------G----A-CTA--TATT-CAAG---TT---GATA-CTTTG-TT--ACTT--TCGGC-ATTTTA
gi|18 : -ACAAAGATACATC-GCTGGTTtcattaagc
gi|18 : tGG-TTACCCTGTTT-ACTAAA-TGTT-TCGACTACGGGCTCA-Caccctgtttactaaatgtttcgactacgggctcac
gi|19 : tacaaagatacatcgctG-----------------------G----A-ATA--TGAT--ACG---TT-T-AATAACATTG-TT--AC-T--TCGCCAATTTTA
gi|2 : tTGGCTCCAGCCGACAAAGCTGGTAACAATATTGGTTTTTGCT-GTAA--GGCTTCATTATACAACTGCATTTTAAACGAACTTGGGT--ACTTCACCACATTTGGTATTTCCTACTTACACTTCCATGC--TCT--TTTCAAAAGAC--AATTCT-CAAAATAATGCTTTCAGTTTTAAACACATTAATATCACAGTC--AATGGGAT-GGGAAGAATA--T-AACA-ACCGTACCTATACTGGATTCCAAAACTTTCTAAAATCC--TACAATACAAAGATATATT-GCGGATT----AGT-AATGTAT-CTACCA-GCCACTGTC-TT---ACTCCTC--CAGAAAAT-ATTGACTAGCT-TCAATAGA-CCACAACTTACAAGAAGTATTTATGAAACTACATATGCCAGGAAGTGGTGGTAAATCAAATGTG-ATTAAC--AAAAAC---ATAGAATTTCTGGTGAATGGAATTCCAG-------AACCTTTCCACATATCATACAACATTCAAAAACAACCG-A-GACTTTTCAACACTTTACAC-----GGAC---CATCCCACACGCTAAATTAAAGACA-AGTCTTTGTTAACATTATAGAGCAGTTGCTTCTTTAACAAAA-TGGAAAAAGGAAA-TATACTTATTCCATGATCAAGCCATTC--AAA-AAAAT---CATTTTGTTA-AAGTTCCACTCTGATT-CTCAAACAAGTACTCTGAAGTTGATGT-AACAGCAATCCTCAA-----TTGGACAATACTTTTTGTATTTGGCC---AATAGGTC----TTTCCAGACAGTCTTCTGGAATTCCAGT-GGCACGAATTATGTTACCACCCTTGGCGTGGCCTTCACAGCCTTATT---ATAGGTATACAGAACGAGA---TGTTTAtattgggaca
gi|2 : CAGCCTTA-TTATAGGTATACAGAACGAGATGT-TTATCATAATTACTCAATCATAATTTTCACCAATTATGTCCATTT-ATATATCCTGACGAACCCGACAATAAAAAACACCACAGAATCATGACAGATGTGCTTTGATATTCTGGATATTT-ACT--A-ATTGACTC-AATG-CAGACTGACAACTGCAAATTATATGGATAAATGTGA------TTACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTA-TAATGTA-CACTA-CGCCTTGTTTAGGATGTGTACAGTCTCTCAAGTCTGATTCG--AT-CAGAAGGACTGCCATGCGTATGATTAT-TTGTATAAAGTCGAGTC-CAA-CTACTAACCAAAAAtcataattactcaatcataattttcaccaattatgtccatttatatatcctgacgaacccgacaataaaaaacaccacagaatcatgacagatgtgctttgatattctggatatttactaattgactcaatgcagactgacaactgcaaattatatggataaatgtgattactttgactttgcaatcgtcaactttccttttctatgtataatgtacactacgccttgtttaggatgtgtacagtctctcaagtctgattcgatcagaaggactgccatgcgtatgattatttgtataaagtcgagtccaactactaaccaaaaa
gi|20 : tggctccagccgacaaagctggtaacaatattggtttttgctgtaaggcttcattatacaactgcattttaaacgaacttgggtacttcaccacatttggtatttcctacttacacttccatgctcttttcaaaagacaattctcaaaataatgctttcagttttaaacacattaatatcacagtcaatgggatgggaagaatataacaaccgtacctatactggattccaaaactttctaaaatcctacaatacaaagatatattgcggattagtaatgtatctaccagccactgtcttactcctccagaaaatattgactagcttcaatagaccacaacttacaagaagtatttatgaaactacatatgccaggaagtggtggtaaatcaaatgtgattaacaaaaacatagaatttctggtgaatggaattccagaacctttccacatatcatacaacattcaaaaacaaccgagacttttcaacactttacacggaccatcccacacgctaaattaaagacaagtctttgttaacattatagagcagttgcttctttaacaaaatggaaaaaggaaatatacttattccatgatcaagccattcaaaaaaatcattttgttaaagttccactctgattctcaaacaagtactctgaagttgatgtaacagcaatcctcaattggacaatactttttgtatttggccaataggtctttccagacagtcttctggaattccagtggcacgaattatgttaccacccttggcgtggccttcaC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------TTGG-----------------------G----A-CTA--TGAT-T--------------------G-TT--CC-T--TCGCC-ATTTTA
gi|21 : -A--AAT-TTG-ACGACGGG-TAATCCCGTTT-ACTT---ta
gi|22 : aggttattattttctcaaaaagGATAAA--TGA--------AATTTGACTTAGCAATCGTCAACTTTCCTTTTC
gi|24 : ttagaaaT-T-CATA-CTTTG-TT--AC-T--TCGCC-ATTTT
gi|25 : TTTTCGTACT-A--GAT-TTG-ACGACGGA-CAATCCCGtatatttagc
gi|26 : ATA-CTTTG-TT--AC-T--TCGCC-ATTTTA
gi|27 : TCG-CTATAATGAC--CGTG----TTTGCTAT-TACAAAtattaaac
gi|3 : AAACGTGACGACTTTGACTTTGACTTTGCAATCGTCAACTTTCTTTTTCTATGTAGTAATGTACCACTATCACCTG-CGTATGATGGGTCT-CTCTCTC-AGT-TGATTCGCAATA-GTATG----G-CATCCGTGTGAGAACGTTTT-TAAAG-CAAG-G-CAAGCTACTAACAAAAAAGTTGATGTTTGCAAGGTGA-TCACGAAT---------A-TCGTTTAAA-A--TAAT-AATTTCGCAAAT-TCT-AC-GGTCGCCTATAATGAC--CTGT----TTTGTGAT-TACAA-----ATCACT----ATTA--GTCA-T-ATG-----TTGACTGATTTGTTTCAAACCCTT----------------TA--TTAGACT-------------------GTCATTTTCGCACT-T--AAT-TTG-ATGACGGG-TTA-CCCGTTT-ACTA---TGTT-TCGACTATGGGCTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACTTTTC---------------------------TTT-TAGTCGAAGG-TAAGTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-ATG---g
gi|4 : TGCAGGGTTAACAACGAA-C--------ACTCGTTT--ACA--TCATCAATT-CGCAAAT-T---AT-GGTCG-CTA--ATGAC---TTG----TTTGCGGT-TACAAATT--ATT--C----A--A--GTCA-TTATG-----TTGACTGAT-------------TT----------------TG--T-----TTATACCCTTTGTTAAGACTGTAATTTTCGTACT-A--TCT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTTATCGACTACGGGCTCATCGGCGTGTGTGACGCGCTAGCGAGGGATGCTTAACTCCTCTATGGCA-CCATGATCCTG-CTTC-G-CTT-TTGTCGAAGGTTTCGTGTTCGCCT------CAC-T-CG--GTGTT-TG--T-A---T-GTGTTTTTTT--------T-GG-----------------------A----A-CTA--TGATATACA---TTAT-AATA-CCTTT-GT--A--T--TCG-C-ATTT
gi|5 : GGACGAATAAAT-AATTTACCGTATTGATACTCGATTCT-AAACTTCACAAAACCCCTTAT----------TGTATCTAATGGTTCA--AGT-AA-ATGTTCTATCTAGCTCCTATC-TCT--GCTACTCGCGA-AGAAT-AT-----------CAATAG---------------------CT-GTGCCGCAACATATGCCAG-AAGTGGTG-TCAATCA--TGTGGA----------GATTCTAAA-AATT------------AAGT---------------TTCCCCAA-ACCA-ACA-CAT-CAAA------CGTATGATTTTTCTACACTTTGCACTAGTGA-ACAGCCATTCCTTACGAATAATCAAAGGC-TAGGCTCT-TTGACATCATAGAA-AGTTGCTTCCTTAAT---AAT-GAAAAAGGAAATTATAagta
gi|6 : aGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAAGT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TTGTTTCATACCATTTGTTAGAC-----T-------------------GTCATTTTCATACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACAGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTGCCTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-TG-----------------------G----A-CTA--TGAT-TACG---TT-T-CATA-CTTTG-TT--AC-T--TCGCC-ATTTTA
gi|7 : GTTA-TAACCAATT--------A-TCGTTT--A-A--TCATCAATTTCGCAAATGTCTGACTGGTTC-TTATAATGGCCTCTTGCTCTCTCGCACTGTACAGATTTAGTCTCTGTCGA--ATTGTCA-T-GTGAGCCTCTGAT--AT-------------GT----------------CA--TAGC--T-------------------CTCATTTCC-TACT-ATTGATCTTG-AC-ACGGGTTAATCCCGTTTAACTTACATATT-TCtattg
gi|8 : -ACTCCTC-ATGGCATCC-TGATCCTA-CATC-A-CTTATCGTCGAAGG-T-CGTGTTGCCCAAGTCGCCAC-TCCGGCAT-TT-TG--TAA---TGGTG---TTTT--------T-GGGGGGGGGGGGGGGGGGGTGGGGGG----A-CTAAGTGAT-T-CGGGTTT-C-GATA-ACTTG-TT--AC-TCCTCGCC-ATTTT
gi|9 : -CGGCGG-TGTGACCGGTCAGCAGA-GATGCTT-ACTCCTCCATGGCA-CC-TGATCCTACCTTC-G-CTT-TTGTCGGAGG-TCCGTGTTGCCCTA-----CGC-T-CG--AT-TT-TG--T-A---T-ATG---TTTT----------------------------------------ATTTA--TGAT-TACG---TT-T-GACA-CATT---------T--TCGCC-TTTTTtatatgtac
blockSeqs : T G . . G T AA A T . CC T T T T T . TTTCA . . A G A A A TATC G . TG . A AAT T A T C AAT T T TAGT G T T A A TAA ACGG ATTGACTAGCTTCAATAGACCACAACTTACAAGAAGTATTT A G G A A G TTAAC TCT G TCTGGTGAATGGAATTCCAGAACC T T A T AACAAC T T TA TAGTGAACAGCC A ACA G A T GC A TG T CT A CA ATCAA C . . . TT . A T . C A C . C T TTTG . T . G C TC A A . G T TTA A GCGTGGCC C C . GG G . . A GA . TA C C C . C A C G C . A . . AA G T CGACTTTG G C T G T CA AA C CA C G GACTGC T G G A T TC G T T A CAC AAAA C T GTCTG T C CT CTCT G TA A GTCGAATT G T AGCCT G TTTGTTTATACCCTTTGTTAAGACTG T A T TT C G T A ACA A T G A A TA T A C TG A T T C G AGTCGC G C GC G C TA A GCT G TTT TGGGGGGGGGGGGGGGGGGGTGGGGGG T AG A A GGT TCG A A T TA T CC A
blockSeqs : C T . . C . . A . CA . T T A . T GCGA TAACTAACTTAA T . . A . . . . . AAGT . . . . . . . TG GGACC T GCT . G C A . AT . G C TT . . . . G T A . . A T G G . T . . G . T . TTA ACA C T TCT . . . . . . A ATTA . . . G TTGTTTCAAACCCTTTATTAGACTG T G . . . . . . AA . . G G . CA . . C GT . C . C C G . C . G . . . . . . TTTTCCTCTTTT . . . A . ATA . T . . . . .
blockSeqs : A . . . . . . . T GAG ATCAATAGCT A . . C . . . TA AA . . T . . . . . . A AA . . . G TTGTTTCATACCATTTGTTAGACTG T G . . . . . . . . . G G . CA . . . G . A . A C A . . . . . . . . . . TGGGGGTA . . . G . TA . A . . . . .
blockSeqs : G . . . CAG . . . . . T AA . . . G GTCATAGCTC T G . . . . . . . . . G G . A . . . G . A . A G C . . . . . . . . . . TTGGG . . . A . TA . T . . . . .
blockSeqs : . . . . . . A . . . . TTAACTG C A . . . . . . . . . . G . . . . . A . T . T G C . . . . . . . . . . TGGG . . . A . TA . A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . G . C . C G A . . . . . . . . . . TTGG . . . A . TC . T . . . . .
blockSeqs : . . . . . . . . . . . . C . C . A . . . . . . . . . . TGGA . . . A . TC . T . . . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . TTGG . . . A . CG . C . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . TG . T . . . . .
blockSeqs : . . . . . . . . . . . . . . . G . C . . . . .
blockSeqs : . . . . . . A . . . . .
blockSeqs : . . . . . .
blockSeqCons : A* TGGG************************************
originalCons : NTGGCTCCAGCCGACAAAGCNGGTAACAACATTGGTCTTTGCTTGTAAAAGNCNCCATTATACAACTGCNTTTTAAACGAACTNGGGTTTACTTCACCACATCTGGNANTTCCTACTTACACTTCCANGCAATCTGACTTCAAAAGACGAAATTCTTCAAAATNATGCTTTCNGTTTTGAACACNTTNATATCACANTCCGAATGGGATCGGGACGAATA--T-AATT-ACCGTACCTATACTGGATTCCGAAACTTCATAAAANCCCTTACAA-ACAAAGATGCATC-GCTGGTTCA--AGT-AATGTGTTCTACCAAGCCCCTATC-TTT--ACTCCTCGCNAGAAAAT-ATTGA-TAGCT-TCAATAGA-CCAC---TT-CA-GAGGTACT-ATGCCACNACATATGCCAG-AAGTGGTG-TNAATCAGATGTGGATT--C--AAAAACTCCAAAGAATTT-TGG--AA---AANTCCAG-------GACCTTTCCAAA-ATCA-ACAGCAT-CAAAA-----CGTATGATTTTTCAACACTTTGCACT--TGAGACA--CATTCCTCACGATNAATTAAAGGCATAGGCTTT-TTNACATNATAGAN-AGTTGCTTCTTTAACAAAAATGGAAAAAGGAAA-TATANNTATTCCATGATCAAGCCATTNGGAAACAAGATACACATTTTGTCAGAAGTTCCACTCTGATCGCCCANACAAGTACTCTGAAGTNGATGTCAANAGCAATNCTCGGGTTTCTTGGACGATACTTTNTGTATTTGGCCTTTAATAGGCCGTGACTTCCAGACAGTNTNNTGGNATTCCNGTGGGCACNAATNGTGTTACCACCCTTGGCGTGGCCTTCGCAGNCTTATTTTCATANNCATACGGAGCGAGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGCAGAACGAGATGTCTTATCATAATTANTCAATCATAATTTTCACCAATTATGTCCATTTGATATATCCTGACGAACCCGACAATAAAANACACCACAGAATCATGACAGATGTGCTTCGATATTCTGGATATTTTACTTAATATTGACTCCAATGGCAGACTGACAACTGCAAATTATATGGATAAACGTGA------TGACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCGCTATCGCCTT-TTTATGATGNGTAC-GTCTCTCAAGT-TGATTCG--ATACGNAAGGGC-G-CATGCGTATGANAAT-TTNT-TAAAG-CGAG-G-CAA-CTACTAACCAAAAAGNTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A--TCATCAATTTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTTCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCCATGGCA-CC-TGATCCTG-CTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-GATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
finalCons : NTGGCTCCAGCCGACAAAGCNGGTAACAACATTGGTCTTTGCTTGTAAAAGNCNCCATTATACAACTGCNTTTTAAACGAACTNGGGTTTACTTCACCACATCTGGNANTTCCTACTTACACTTCCANGCAATCTGACTTCAAAAGACGAAATTCTTCAAAATNATGCTTTCNGTTTTGAACACNTTNATATCACANTCCGAATGGGATCGGGACGAATA--T-AATT-ACCGTACCTATACTGGATTCCGAAACTTCATAAAANCCCTTACAA-ACAAAGATGCATC-GCTGGTTCA--AGT-AATGTGTTCTACCAAGCCCCTATC-TTT--ACTCCTCGCNAGAAAAT-ATTGA-TAGCT-TCAATAGA-CCAC---TT-CA-GAGGTACT-ATGCCACNACATATGCCAG-AAGTGGTG-TNAATCAGATGTGGATT--C--AAAAACTCCAAAGAATTT-TGG--AA---AANTCCAG-------GACCTTTCCAAA-ATCA-ACAGCAT-CAAAA-----CGTATGATTTTTCAACACTTTGCACT--TGAGACA--CATTCCTCACGATNAATTAAAGGCATAGGCTTT-TTNACATNATAGAN-AGTTGCTTCTTTAACAAAAATGGAAAAAGGAAA-TATANNTATTCCATGATCAAGCCATTNGGAAACAAGATACACATTTTGTCAGAAGTTCCACTCTGATCGCCCANACAAGTACTCTGAAGTNGATGTCAANAGCAATNCTCGGGTTTCTTGGACGATACTTTNTGTATTTGGCCTTTAATAGGCCGTGACTTCCAGACAGTNTNNTGGNATTCCNGTGGGCACNAATNGTGTTACCACCCTTGGCGTGGCCTTCGCAGNCTTATTTTCATANNCATACGGAGCGAGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGCAGAACGAGATGTCTTATCATAATTANTCAATCATAATTTTCACCAATTATGTCCATTTGATATATCCTGACGAACCCGACAATAAAANACACCACAGAATCATGACAGATGTGCTTCGATATTCTGGATATTTTACTTAATATTGACTCCAATGGCAGACTGACAACTGCAAATTATATGGATAAACGTGA------TGACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCGCTATCGCCTT-TTTATGATGNGTAC-GTCTCTCAAGT-TGATTCG--ATACGNAAGGGC-G-CATGCGTATGANAAT-TTNT-TAAAG-CGAG-G-CAA-CTACTAACCAAAAAGNTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A--TCATCAATTTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTTCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCCTCA-TGGCA-CC-TGATCCTG-CTTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTTTGGG------------------------------------A-CTA--TGAT-TACG---TT-T-GATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAGTCCGTAGATTGACTGATTTGTTTCATACCATTTGTTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 1111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 11 11 11 1 1 11 2222222 11 1 1 2222 11 11 1 2222 1 1 111 2222 1 1 111 22222 22222222222222222222222222222222222222222222 1 1 1 4444444 0000000000000000000000000000000 1 1 1 1 444444 11 4444444444444 2222 1 11 111 1 1 11 22222 111 1 222 1 11 1 1 1 22222 1 2222 222 1 2222 1 1 222 1 33333333 222 1 222 1 1 11 1 11 1 1 1 1 1 1 1 1 2222 1 1 11 33333333 1 11 11 1 11 11 444444 1 1 1 222 1 1 444444444444 1111111 1 11111 1 1111 2222222222 11111 44444444444444444444444444444444444444444444444444444444444444 111 2222 111 111111 5555555555555555555555555555555555555555
lowQualScore : 1 5 5 88 1 1 88 1 1 88 77 1 1 5 5 1 88 8888888 88 5 1 5 1 1 1 4444 1 77 88 5 3 2222 3 2 1 6 444 1 8 0 3333 0 5 3 3 8 111 66666 11111111111111111111111111111111111111111111 1 0 0 1 2 6 1111111 999 6 4444444444444444444444444444444 3 3 2 3 000000 7 7 11 9999999999999 1 2222 3 1 1 44 7 000 3 22 5 88 77777 888 5 111 5 88 5 1 1 5 1 5 1 66666 5 1 4444 111 5 3333 5 1 22 1 1 5 1 1 111 5 33333333 2 1 111 22 5 111 5 5 88 5 88 1 5 5 5 5 1 5 5 5 5 5555 5 5 88 6 6 44444444 6 6 0 7 3 1 44 44 3 88 44 1 222222 1 3 1 3 3 555 3 1 7 0 777777777777 9999999 2 5 00000 0 6 99 4444 6 99 3 2222222222 6 6 66666 2 44444444444444444444444444444444444444444444444444444444444444 3 1 5 66 5 5 4 0 5 777 6 5 2 5 5 0000 4 4 222 666 4 2 4 2 6 777777 3 7 55 7 3 44 3 555 3 666 0000000000000000000000000000000000000000 3 55 3 1 666 7777 3 2 3 44 3 44 3
lowQualScore : . . . .. . . .. . . .. .. . . . . . .. ....... .. . . . . . . .... . .. .. . . .... . . . . ... . . . .... . . . . . ... ..... ............................................ . . . . . . ....... ... . ............................... . . . . ...... . . .. ............. . .... . . . .. . ... . .. . .. ..... ... . ... . .. . . . . . . . ..... . . .... ... . .... . . .. . . . . . ... . ........ . . ... .. . ... . . .. . .. . . . . . . . . . . .... . . .. . . ........ . . . . . . .. .. . .. .. . ...... . . . . . ... . . . . ............ ....... . . ..... . . .. .... . .. . .......... . . ..... . .............................................................. . . . .. . . . . . ... . . . . . .... . . ... ... . . . . . ...... . . .. . . .. . ... . ... ........................................ . .. . . ... .... . . . .. . .. .
lowQualScore : 0 0 5 55 0 0 55 0 0 55 55 0 0 5 5 0 55 0000000 00 5 0 0 0 0 0 0000 0 55 00 0 7 7777 3 0 0 7 333 4 0 6 2222 0 5 2 2 0 888 00000 33333333333333333333333333333333333333333333 0 0 0 0 0 7 3333333 333 7 3333333333333333333333333333333 3 3 0 3 777777 3 3 00 7777777777777 0 0000 3 0 0 33 3 000 3 00 5 00 00000 555 0 000 0 55 0 0 0 0 0 5 0 55555 0 0 0000 555 5 5555 0 0 00 0 0 0 0 0 555 5 00000000 5 0 000 00 0 000 0 5 00 0 55 0 0 0 0 0 0 0 0 0 5 0000 0 0 55 7 5 55555555 7 7 7 3 3 0 00 77 3 33 00 0 000000 0 3 0 3 3 000 3 0 3 0 000000000000 5555555 5 5 55555 0 7 22 2222 7 22 5 7777777777 7 7 77777 5 88888888888888888888888888888888888888888888888888888888888888 6 7 0 99 0 0 4 9 7 999 7 7 5 0 0 5555 4 4 444 222 4 7 4 9 7 111111 6 3 00 3 6 66 3 888 3 444 3333333333333333333333333333333333333333 6 00 6 3 444 9999 1 1 1 22 1 22 3
consensus : NTGGCTCCAGCCGACAAAGCNGGTAACAACATTGGTCTTTGCTTGTAAAAGNCNCCATTATACAACTGCNTTTTAAACGAACTNGGGTTTACTTCACCACATCTGGNANTTCCTACTTACACTTCCANGCAATCTGACTTCAAAAGACGAAATTCTTCAAAATNATGCTTTCNGTTTTGAACACNTTNATATCACANTCCGAATGGGATCGGGACGAATA--T-AATT-ACCGTACCTATACTGGATTCCGAAACTTCATAAAANCCCTTACAA-ACAAAGATGCATC-GCTGGTTCA--AGT-AATGTGTTCTACCAAGCCCCTATC-TTT--ACTCCTCGCNAGAAAAT-ATTGA-TAGCT-TCAATAGA-CCAC---TT-CA-GAGGTACT-ATGCCACNACATATGCCAG-AAGTGGTG-TNAATCAGATGTGGATT--C--AAAAACTCCAAAGAATTT-TGG--AA---AANTCCAG-------GACCTTTCCAAA-ATCA-ACAGCAT-CAAAA-----CGTATGATTTTTCAACACTTTGCACT--TGAGACA--CATTCCTCACGATNAATTAAAGGCATAGGCTTT-TTNACATNATAGAN-AGTTGCTTCTTTAACAAAAATGGAAAAAGGAAA-TATANNTATTCCATGATCAAGCCATTNGGAAACAAGATACACATTTTGTCAGAAGTTCCACTCTGATCGCCCANACAAGTACTCTGAAGTNGATGTCAANAGCAATNCTCGGGTTTCTTGGACGATACTTTNTGTATTTGGCCTTTAATAGGCCGTGACTTCCAGACAGTNTNNTGGNATTCCNGTGGGCACNAATNGTGTTACCACCCTTGGCGTGGCCTTCGCAGNCTTATTTTCATANNCATACGGAGCGAGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGCAGAACGAGATGTCTTATCATAATTANTCAATCATAATTTTCACCAATTATGTCCATTTGATATATCCTGACGAACCCGACAATAAAANACACCACAGAATCATGACAGATGTGCTTCGATATTCTGGATATTTTACTTAATATTGACTCCAATGGCAGACTGACAACTGCAAATTATATGGATAAACGTGA------TGACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCGCTATCGCCTT-TTTATGATGNGTAC-GTCTCTCAAGT-TGATTCG--ATACGNAAGGGC-G-CATGCGTATGANAAT-TTNT-TAAAG-CGAG-G-CAA-CTACTAACCAAAAAGNTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A--TCATCAATTTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTTCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCC-T-C-ATGGCA-CC-TGATCCTG-C-TTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-GATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
Reference ( family-914 ) : NTGGCTCCAGCCGACAAAGCNGGTAACAACATTGGTCTTTGCTTGTAAAAGNCNCCATTATACAACTGCNTTTTAAACGAACTNGGGTTTACTTCACCACATCTGGNANTTCCTACTTACACTTCCANGCAATCTGACTTCAAAAGACGAAATTCTTCAAAATNATGCTTTCNGTTTTGAACACNTTNATATCACANTCCGAATGGGATCGGGACGAATA--T-AATT-ACCGTACCTATACTGGATTCCGAAACTTCATAAAANCCCTTACAA-ACAAAGATGCATC-GCTGGTTCA--AGT-AATGTGTTCTACCAAGCCCCTATC-TTT--ACTCCTCGCNAGAAAAT-ATTGA-TAGCT-TCAATAGA-CCAC---TT-CA-GAGGTACT-ATGCCACNACATATGCCAG-AAGTGGTG-TNAATCAGATGTGGATT--C--AAAAACTCCAAAGAATTT-TGG--AA---AANTCCAG-------GACCTTTCCAAA-ATCA-ACAGCAT-CAAAA-----CGTATGATTTTTCAACACTTTGCACT--TGAGACA--CATTCCTCACGATNAATTAAAGGCATAGGCTTT-TTNACATNATAGAN-AGTTGCTTCTTTAACAAAAATGGAAAAAGGAAA-TATANNTATTCCATGATCAAGCCATTNGGAAACAAGATACACATTTTGTCAGAAGTTCCACTCTGATCGCCCANACAAGTACTCTGAAGTNGATGTCAANAGCAATNCTCGGGTTTCTTGGACGATACTTTNTGTATTTGGCCTTTAATAGGCCGTGACTTCCAGACAGTNTNNTGGNATTCCNGTGGGCACNAATNGTGTTACCACCCTTGGCGTGGCCTTCGCAGNCTTATTTTCATANNCATACGGAGCGAGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGCAGAACGAGATGTCTTATCATAATTANTCAATCATAATTTTCACCAATTATGTCCATTTGATATATCCTGACGAACCCGACAATAAAANACACCACAGAATCATGACAGATGTGCTTCGATATTCTGGATATTTTACTTAATATTGACTCCAATGGCAGACTGACAACTGCAAATTATATGGATAAACGTGA------TGACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTAGTAATGTACCGCTATCGCCTT-TTTATGATGNGTAC-GTCTCTCAAGT-TGATTCG--ATACGNAAGGGC-G-CATGCGTATGANAAT-TTNT-TAAAG-CGAG-G-CAA-CTACTAACCAAAAAGNTGATGTTTGCAGGGTTA-TAACGAATC--------A-TCGTTT--A-A--TCATCAATTTCGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TT----------------TA--T-----T-------------------GTCATTTTCGTACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCC-T-C-ATGGCA-CC-TGATCCTG-C-TTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-GATA-CNTTG-TT--AC-T--TCGCC-ATTTTA
gi|1 : TAGTTCCAGCTGATAAAGCAAGTAACAACATTG-TCTTTGTTTGTAAAAGTCACTATTATAC--TTGTCTTTTAAATGAACTAGGGTTTACTTCA--ACATCTGGGAAT-CCTACTTATACT-CCAAGCAATCTGACT---AAAGATGAAATTCTTCAAAATCAT-CTTTCTGTTTTGAATACTTTCA----ACATTCCGAA--GAATCAGGATCAATT--TGAATT-ACCATACCTTTACTGGATTCCGAAATTGCATAAGAATCCTTACAA-ACAAAGATGCATC-GCTGGTTCC--AGG-AA-GTGCTCTACCAAGCGTCTATC-CTT--AATACTAACTA--AACT-ACGAA-TAGCTGTTAA-AGAGTCAC---TT-CA-GAGATACT-ATTCCACTACATATTCCAG-AAGTGGTG-TCAATCAGATGTGGATT--CTCAAAAACTCCAAAGAGGTTATAG--AA---AACTCCAGTTCACGAGATTTTTCTAAA-ATTA-ACTGCAT-CAAAA-----CGTATGATTTCTCAACACCT----CT--TAAAACA---ATTCTTCACGATGAATTAAAA-TATAGGCTTT-TTCAGATAATTGAC-AAATGCTTTTTGAACAAAAACGGCACCCGAAAA-TACAAGT-TTC--TG-----GTCATTGGGAAACAAGATACATATTTTGTCAGAAA--CCACTCTGATCGCCCACACAAGTACTCTGAAGTAGATATCAAGAGCA-TGCTTGGGTTTCTTAGATGATA-TTTATGTA----GCCTTTAA-AGACCGTGACTTCCA-ACAATATGGTGGTATTCCTATGGGCACTAATGGTG---CC-CCCTTA--------TTGGCAGACTTATTTTCATATTCATACGAAGC-AGAATCTGTTCAAAAACTGTTACGGGATAAAAACAAAAAATACTCAGCCTTACTTATAGGTATGTAGA-CGA--TGTCTTATCA--ATTAAT-AATCATAATTTTCAC-AATTATGTCCATTTGATATATCCTGACGAACTCGA-AATAAAACACACTACAAAAT-ATGACAGATATGCTTC-ATATT-TGGATATTTTACTTAATATTGACTCCAATGGCAGACTGATAACTACA--TTATATG-ATAAACGTGA------TGACTTTGACTTTGGAATCGTCAACTTTACTTTTCTATGTAGTAATATACCGCTGTCGCTTT-TTTATGGTGAGTAT-GTCTCTTA-GT-TGATTCG--ATACGCAAGGGC----ATGCGTATGGAAAT-TTAT-TAAAG-CGAG-GACAA-CCACTAACCAAAAAGATGATGTT-GCAGGGTTA-TAACGAATCTCGTTTATA-TCGTTT--A-AAATCATCAATT-CGCAAAT-TCT-AC-GGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAATT--ATCACT----A--A--GTCA-T-ATG-----TTGGCT----------------------------------TA--T-----T---------------------CATTTG-GTACA-A--GAT-TTG-ACAACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACGGGCTCA-CGGCGGTTGTGACCGGTCAGCAGATGATGCTT-ACTCCTT-C-CTGGCA-CC-TGCTCCTGAT-TTC-G-CTA-TTTTCGAAGG-TCTGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTTA-------T-GG-----------------------G----A-CTA--TGAT-TACG---TT-T-AATA-TTTCG-AT--AC-T--TCGCC-ATTTTA
gi|10 : cGTCAGCAGAAGATACTT-ACTCC-T--------A-CC-TGATCCTG-T-TTTTG-CTT-TTGTTGGAAG-TCCGTGTTGCCCTG-----CAC-T-CC--AC-TT-TGTAT-A---T-ATG---TTTT--------T-GG-----------------------G----T-CTA--TGAT-TACG---TT-T-AACA-CATTGTTT--GC-T--TAGCC-AATTTA
gi|11 : A-TC-TGATCCTG-C-TTC-GTCTT-TC--CGAGGT-CCCGTGTTCCCCT------CAC-TCCG--ATGTT-TG--A-A---T-GTA---TTTTTTTTCCTCT-TT-----------------------T----A-CTA--TGA--TAC-----T-T-ATTA-CTTT--TT--AC-T--T--CC-ATTTtata
gi|12 : ttaacgcgctctgcagctgcatcaTT--ATTAGT----A------TCAGT-GCG-----TT--CTGTC-------------TT----------------AA--C-----T-------------------GTCATTT-CATACTTA--GAT-TTGGACGACGTG-TAACCCTGTgta
gi|13 : tcacttaagtatcatatgtgcgagctgaaggatGCCCCTAGT-TTT--GCTCCTCG--AGAAAAT-------TAACT--------A---AC---TT-AA----------ATGCCATAACATATGCCAT-AAGTGGTT-TAAAT
gi|14 : CCCTA-----CACGT-CG--AT-TTCTG--T-AGCTT-G-G---TTTT--------T-GG-----------------------GGGTAA-CTA--TGAT-TGCG---TT-TCGATA-CATTG-TTTAAC-T--TCGCaaacaaaaaatgatcctaaaaatt
gi|15 : ttTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACTTT-T-C----------------------------TTT-TAGTCGAAGG-TAAGTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-gcttattatattg
gi|16 : -ACAAAGATTCATT-GCGGATTTAGTAATGAATGTGTTCCGTCAAG-CCCTGTCATTTAAACTCCTCACG-GAAAGTGATTGA-CAGTT-a
gi|17 : --T-A---T-ACG---TTTT--------T-TG-----------------------G----A-CTA--TATT-CAAG---TT---GATA-CTTTG-TT--ACTT--TCGGC-ATTTTA
gi|18 : -ACAAAGATACATC-GCTGGTTtcattaagc
gi|18 : tGG-TTACCCTGTTT-ACTAAA-TGTT-TCGACTACGGGCTCA-Caccctgtttactaaatgtttcgactacgggctcac
gi|19 : tacaaagatacatcgctG-----------------------G----A-ATA--TGAT--ACG---TT-T-AATAACATTG-TT--AC-T--TCGCCAATTTTA
gi|2 : tTGGCTCCAGCCGACAAAGCTGGTAACAATATTGGTTTTTGCT-GTAA--GGCTTCATTATACAACTGCATTTTAAACGAACTTGGGT--ACTTCACCACATTTGGTATTTCCTACTTACACTTCCATGC--TCT--TTTCAAAAGAC--AATTCT-CAAAATAATGCTTTCAGTTTTAAACACATTAATATCACAGTC--AATGGGAT-GGGAAGAATA--T-AACA-ACCGTACCTATACTGGATTCCAAAACTTTCTAAAATCC--TACAATACAAAGATATATT-GCGGATT----AGT-AATGTAT-CTACCA-GCCACTGTC-TT---ACTCCTC--CAGAAAAT-ATTGACTAGCT-TCAATAGA-CCACAACTTACAAGAAGTATTTATGAAACTACATATGCCAGGAAGTGGTGGTAAATCAAATGTG-ATTAAC--AAAAAC---ATAGAATTTCTGGTGAATGGAATTCCAG-------AACCTTTCCACATATCATACAACATTCAAAAACAACCG-A-GACTTTTCAACACTTTACAC-----GGAC---CATCCCACACGCTAAATTAAAGACA-AGTCTTTGTTAACATTATAGAGCAGTTGCTTCTTTAACAAAA-TGGAAAAAGGAAA-TATACTTATTCCATGATCAAGCCATTC--AAA-AAAAT---CATTTTGTTA-AAGTTCCACTCTGATT-CTCAAACAAGTACTCTGAAGTTGATGT-AACAGCAATCCTCAA-----TTGGACAATACTTTTTGTATTTGGCC---AATAGGTC----TTTCCAGACAGTCTTCTGGAATTCCAGT-GGCACGAATTATGTTACCACCCTTGGCGTGGCCTTCACAGCCTTATT---ATAGGTATACAGAACGAGA---TGTTTAtattgggaca
gi|2 : CAGCCTTA-TTATAGGTATACAGAACGAGATGT-TTATCATAATTACTCAATCATAATTTTCACCAATTATGTCCATTT-ATATATCCTGACGAACCCGACAATAAAAAACACCACAGAATCATGACAGATGTGCTTTGATATTCTGGATATTT-ACT--A-ATTGACTC-AATG-CAGACTGACAACTGCAAATTATATGGATAAATGTGA------TTACTTTGACTTTGCAATCGTCAACTTTCCTTTTCTATGTA-TAATGTA-CACTA-CGCCTTGTTTAGGATGTGTACAGTCTCTCAAGTCTGATTCG--AT-CAGAAGGACTGCCATGCGTATGATTAT-TTGTATAAAGTCGAGTC-CAA-CTACTAACCAAAAAtcataattactcaatcataattttcaccaattatgtccatttatatatcctgacgaacccgacaataaaaaacaccacagaatcatgacagatgtgctttgatattctggatatttactaattgactcaatgcagactgacaactgcaaattatatggataaatgtgattactttgactttgcaatcgtcaactttccttttctatgtataatgtacactacgccttgtttaggatgtgtacagtctctcaagtctgattcgatcagaaggactgccatgcgtatgattatttgtataaagtcgagtccaactactaaccaaaaa
gi|20 : tggctccagccgacaaagctggtaacaatattggtttttgctgtaaggcttcattatacaactgcattttaaacgaacttgggtacttcaccacatttggtatttcctacttacacttccatgctcttttcaaaagacaattctcaaaataatgctttcagttttaaacacattaatatcacagtcaatgggatgggaagaatataacaaccgtacctatactggattccaaaactttctaaaatcctacaatacaaagatatattgcggattagtaatgtatctaccagccactgtcttactcctccagaaaatattgactagcttcaatagaccacaacttacaagaagtatttatgaaactacatatgccaggaagtggtggtaaatcaaatgtgattaacaaaaacatagaatttctggtgaatggaattccagaacctttccacatatcatacaacattcaaaaacaaccgagacttttcaacactttacacggaccatcccacacgctaaattaaagacaagtctttgttaacattatagagcagttgcttctttaacaaaatggaaaaaggaaatatacttattccatgatcaagccattcaaaaaaatcattttgttaaagttccactctgattctcaaacaagtactctgaagttgatgtaacagcaatcctcaattggacaatactttttgtatttggccaataggtctttccagacagtcttctggaattccagtggcacgaattatgttaccacccttggcgtggccttcaC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------TTGG-----------------------G----A-CTA--TGAT-T--------------------G-TT--CC-T--TCGCC-ATTTTA
gi|21 : -A--AAT-TTG-ACGACGGG-TAATCCCGTTT-ACTT---ta
gi|22 : aggttattattttctcaaaaagGATAAA--TGA--------AATTTGACTTAGCAATCGTCAACTTTCCTTTTC
gi|24 : ttagaaaT-T-CATA-CTTTG-TT--AC-T--TCGCC-ATTTT
gi|25 : TTTTCGTACT-A--GAT-TTG-ACGACGGA-CAATCCCGtatatttagc
gi|26 : ATA-CTTTG-TT--AC-T--TCGCC-ATTTTA
gi|27 : TCG-CTATAATGAC--CGTG----TTTGCTAT-TACAAAtattaaac
gi|3 : AAACGTGACGACTTTGACTTTGACTTTGCAATCGTCAACTTTCTTTTTCTATGTAGTAATGTACCACTATCACCTG-CGTATGATGGGTCT-CTCTCTC-AGT-TGATTCGCAATA-GTATG----G-CATCCGTGTGAGAACGTTTT-TAAAG-CAAG-G-CAAGCTACTAACAAAAAAGTTGATGTTTGCAAGGTGA-TCACGAAT---------A-TCGTTTAAA-A--TAAT-AATTTCGCAAAT-TCT-AC-GGTCGCCTATAATGAC--CTGT----TTTGTGAT-TACAA-----ATCACT----ATTA--GTCA-T-ATG-----TTGACTGATTTGTTTCAAACCCTT----------------TA--TTAGACT-------------------GTCATTTTCGCACT-T--AAT-TTG-ATGACGGG-TTA-CCCGTTT-ACTA---TGTT-TCGACTATGGGCTCA-CGGCTGGTGTAACCGGTCAGCAGAGGATGCTT-ACTTT-T-C----------------------------TTT-TAGTCGAAGG-TAAGTGTT-CCCTC-----CAC-T-CG--AT-AT-TG--T-A---T-ATG---g
gi|4 : TGCAGGGTTAACAACGAA-C--------ACTCGTTT--ACA--TCATCAATT-CGCAAAT-T---AT-GGTCG-CTA--ATGAC---TTG----TTTGCGGT-TACAAATT--ATT--C----A--A--GTCA-TTATG-----TTGACTGAT-------------TT----------------TG--T-----TTATACCCTTTGTTAAGACTGTAATTTTCGTACT-A--TCT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTTATCGACTACGGGCTCATCGGCGTGTGTGACGCGCTAGCGAGGGATGCTTAACTCC-T-CTATGGCA-CCATGATCCTG-C-TTC-G-CTT-TTGTCGAAGGTTTCGTGTTCGCCT------CAC-T-CG--GTGTT-TG--T-A---T-GTGTTTTTTT--------T-GG-----------------------A----A-CTA--TGATATACA---TTAT-AATA-CCTTT-GT--A--T--TCG-C-ATTT
gi|5 : GGACGAATAAAT-AATTTACCGTATTGATACTCGATTCT-AAACTTCACAAAACCCCTTAT----------TGTATCTAATGGTTCA--AGT-AA-ATGTTCTATCTAGCTCCTATC-TCT--GCTACTCGCGA-AGAAT-AT-----------CAATAG---------------------CT-GTGCCGCAACATATGCCAG-AAGTGGTG-TCAATCA--TGTGGA----------GATTCTAAA-AATT------------AAGT---------------TTCCCCAA-ACCA-ACA-CAT-CAAA------CGTATGATTTTTCTACACTTTGCACTAGTGA-ACAGCCATTCCTTACGAATAATCAAAGGC-TAGGCTCT-TTGACATCATAGAA-AGTTGCTTCCTTAAT---AAT-GAAAAAGGAAATTATAagta
gi|6 : aGTCG-CTATAATGAC--CTTG----TTTGCGAT-TACAAAGT--ATCACT----A--A--GTCA-T-ATG-----TTGACTGAT-------------TTGTTTCATACCATTTGTTAGAC-----T-------------------GTCATTTTCATACT-A--GAT-TTG-ACGACGGG-TAACCCCGTTT-ACTT---TGTT-TCGACTACAGGCTCA-CGGCGGGTGTGACCGGTCAGCAGAGGATGCTT-ACTCC-TCC-ATGGCA-CC-TGATCCTGCC-TTC-G-CTT-TCGTCGAAGG-TCCGTGTTGCCCTA-----CAC-T-CG--AT-TT-TG--T-A---T-GTG---TTTT--------T-TG-----------------------G----A-CTA--TGAT-TACG---TT-T-CATA-CTTTG-TT--AC-T--TCGCC-ATTTTA
gi|7 : GTTA-TAACCAATT--------A-TCGTTT--A-A--TCATCAATTTCGCAAATGTCTGACTGGTTC-TTATAATGGCCTCTTGCTCTCTCGCACTGTACAGATTTAGTCTCTGTCGA--ATTGTCA-T-GTGAGCCTCTGAT--AT-------------GT----------------CA--TAGC--T-------------------CTCATTTCC-TACT-ATTGATCTTG-AC-ACGGGTTAATCCCGTTTAACTTACATATT-TCtattg
gi|8 : -ACTCC-T-C-ATGGCATCC-TGATCCTA-C-ATC-A-CTTATCGTCGAAGG-T-CGTGTTGCCCAAGTCGCCAC-TCCGGCAT-TT-TG--TAA---TGGTG---TTTT--------T-GGGGGGGGGGGGGGGGGGGTGGGGGG----A-CTAAGTGAT-T-CGGGTTT-C-GATA-ACTTG-TT--AC-TCCTCGCC-ATTTT
gi|9 : -CGGCGG-TGTGACCGGTCAGCAGAG-ATGCTT-ACTCC-T-CCATGGCA-CC-TGATCCTA-CCTTC-G-CTT-TTGTCGGAGG-TCCGTGTTGCCCTA-----CGC-T-CG--AT-TT-TG--T-A---T-ATG---TTTT----------------------------------------ATTTA--TGAT-TACG---TT-T-GACA-CATT---------T--TCGCC-TTTTTtatatgtac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAGTCCGTAGATTGACTGATTTGTTTCATACCATTTGTTA