lowQualScore : 22 2222222222 8888888888888888888888888888888888888888888888888888888888888 22222222 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 2222
lowQualScore : 11 4444444444 9999999999999999999999999999999999999999999999999999999999999 66 0 55 8 11111111 666666 44 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 333 5 8888 3 0 9 6
lowQualScore : .. .......... ............................................................. .. . .. . ........ ...... .. ......................................................................................... ... . .... . . . .
lowQualScore : 00 5555555555 3333333333333333333333333333333333333333333333333333333333333 00 1 88 0 88888888 999999 55 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 999 7 9999 7 7 0 0
consensus : ACTTGCTACAAAC---AAACTT-TTTT--------AAAAAATG-TGA---TGAAAATNAAAA---CAAAT-TAATTTA----T-T---TTA-TAAGTAAAATGAA-TACAAT-T-ACCGT-ATGGA-ATG--TAATTTATTCCCATGATTTCTCAATTAAGTC----------------CAAAACAGTGAGG---A--A-----T--G---TAT-AGANTTAT----ATN--------GGGAGG---GANNATAT--AT-TTCGACTTT--TGAACATCATAGAAAATTTGCA
Reference ( gi|5 ) : ACTTGCTGCAAAC---AAACTC-TTTC--------AAAAAACGTTAA---TGAAAATTAAAA---CAGAT-TAATTTA----T-----TTA-TAAGTAAAATGAA-TACAAT-T-ATCAT-CTGGA-ATA--TAATTCATTCCCATGATTTCTCAATTAAGTT----------------GAAAACAGCAAGG---G--------T--G---TAT-AGAGTAAC----ATT--------GAGAGA---AGCCATAT--GT-TTCAACTTC--GGAACATCACAGAGAATTTGTA
gi|11 : ACTTGTTATAAAC---A--CTT-TTTT--------CAAAAATG------------ATTAAAA---T-GA------------------------AAGTAAAATGAT-TACAAT-TTACTAT---AGA-GAG--TAATTTATTTCTATGATTTCTTAATTAAGTT----------------AAAA
gi|2 : acACTTGCT----AC---AAACTT-TTTTTTTATATTAAAAAATGATAAATATGACAACTAAA--------T-CAATGTT----T-----TCA-TAAGTAAAGCGAT-GGCAAT-T-ACCGT-AAGGA-TCA--CAATTTAGCTACTTGATTCCTCGACGAAGCC----------------CAACACAGTTAGG---A--------T--GACATAT-A
gi|4 : cTTGCTACAAACTTTAAAAAG-TTTT--------AAAAA----TGA---TGAAAATGAAAA---T-GCT---ATTTACAC-T-----TCA-CAAGAGAGATGAA-CACAAT-TTACCATTCTAG-------TCATTTGTTCCCATGGTTTCTCAATTGAGATCCCCCCTCAAAAAAAAAAAAACAGTGGGG---GAAATT---T--G---TAT-AGGGTTAA----GTA--------GAGAGAGTTAAATAAAT--ATATTCGACTT----GAACACCATAGaggagggattttggggtgaaaatttacgaccccttattactttcgtacttattgcaaccaaactaagccaaaaaatatatagcaaccaatgcatccatttt
gi|10 : AC---AAGCTTGTTTC--------AGAAA----TGA---TGAAAATGAAAA---CAAAT-TATTTTG----TCT---TTG-TAAGTAAAATAAAAGATATT-T-ACCAT-ATGAA-ATA--TAATTTATTTCAATAAGTTTTCAATTTTGTT----------------Ggatttaagatcaa
gi|9 : ttgttTTC--------AAA----GTTGA---TAAAAGATGACA---CAA---TAATTTAAGTTT-----TTG-TAAGTATAAGGAA-TACAATAT-ACCAT-GTGGA-ACA--TAA------CTGATGATTT-TCAATTAAG
gi|1 : acacttgcattgctacaacttcgttta---TGAAAATGAGAAAACCAAATGTAGTTTA----TGTGTTTTA-TA-GTAAAATGAT-TACAAC-TGACTAT-AGGGA-ATG--TAATTTATCCCCAATATTTTGC----AAGTC----------------CAAAAGAGTGAGGAAAA--------TTAA---TAT-AGATTAATTAGGATTACAATACAGAGGGA---TAACATCTCAAT-TTCAACTTT--TGAACATCATAGAAAGTTTGC
gi|3 : AATTCA----TATT--TTAGTACGTGAAATGAA-TTTAAT-TTACTGT-GTGGA-GTA--TG---CATTTCCATGGCTACTCAATGAAGTC----------------CAAAAAAGTAAGA---AAAATC---T--A---TGT-AGATTCAT----ATA--------AAGAGG---GACAATAT--AT-TTCAAATTT--TGAACATCATAGAAAATTTagttcctaataatagtaattataggaattttataattgtacttatcaaataataaaacccaaccaaacaaaaactctttgtttgtgcaact
gi|6 : a----T-----TTT-TAA-TAAAGTGAA-TACAGT-T--TGAA-ATGTATATACGTAATATATTCCCATGATTCCTCAATTAAGTC----------------CAAAA-----------A--------T--T---TATAAGATT--T----GTT--------TAGTGA---A---ATAT--AT-TTCAACTTT--TGACCATCATA-CGAATTTGCacaagcccttatttctgaaatattttgtacttactacatgtacaagcaagcaaacccaaaaaatagatatcaacttatgcaccatttttt
gi|8 : AATGT-ATCGT-ATGGA-ATG--TAATTCATTCCCATGGTTTCTCAATTAAGTC----------------CAAAGTGGT---G---GTTAACATTT--G---TAT-AGAGGTAT----ATT--------GGTAGG---GGTAATAT--AT-TTCAACTGT--GAAAAATCTCACA-AATTTttttgtccttgcgattttta
gi|14 : T-T-ACCGT-ATGGA-ATG--AAATGTATTCTCATGAACTCACAATTAAGCC----------------CAAAACAGCta
gi|12 : at--------T--G---TAT-AGAGTTAT----ATA--------GGAAGA---GATAATTT--AT-TTCAGCTTT--TGGACAACATAGAAAATTTtgagaaactttgtacataggttt
gi|13 : caagcaagtaggaaaaatt--------GGGAGG---GGTGATAT--AT-TTCGACTTTTTAAAACATCATAGAAAATTTacaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ATGAATTCAATTTACTTTATATAGTATCCCATAATTTTATAAAGTCCACAAGAGAGAGGGGGGAAATTAAGGCTTATACAGGGAGGGATAGTTATGTATTTCAACATTTGAACATAGAAAATTATCAAGTTCAAGTTATTTTT
Unaligned ( gi|15 ): TTTTACATTTGTACTTATTAAAACTAAACTAAGCCAAAAATATATATCAACCTATGCATCCAT
Unaligned ( gi|16 ): TTTTTTTATGAAACATATTTAGTTGGTTTTTCATTTTCATCATTTTCATGATTTTTGA
Alignments
lowQualScore : 222222 2222222222 2222 3333333333333333333333333 222 222222222222222 555555555555555 11111111111 111111111
lowQualScore : 777777 6 9999999999 1 9999 1 3333333333333333333333333 999 1 4 6 222 0 88 1 3 555555555555555 2 444 555555555555555 55 4 1 0 1 1 99999999999 666666666 9999 4 2 66 4
lowQualScore : ...... . .......... . .... . ......................... ... . . . ... . .. . . ............... . ... ............... .. . . . . . ........... ......... .... . . .. .
lowQualScore : 555555 7 8888888888 7 8888 0 1111111111111111111111111 333 8 0 7 555 8 88 2 6 000000000000000 9 777 000000000000000 55 0 0 1 0 0 00000000000 222222222 4444 4 4 11 4
consensus : ACTTGCTACAAAC---AAACTTT-TTT-------A--AAAAATGT-GATGAAAATGAAAA---C-AAAT-TAATTTA---T----TTTA-TAAGTAAAATGAA-TACAAT-TT--ACCGTATGGAACGTAATTTATTCCCATGATTTCTCAATTAAG-TCC---------------AAAACAG-TGAGG-----AAAAT--TG-T--AT-AGANTTATATAGG-----------GAGGG---ATA---ATAT----AT-TTCAACTTTT--GAACATCATA-GAAAATTTGCA
Reference ( family-855 ) : ACTTGCTACAAAC---AAACTTT-TTT-------A--AAAAATGT-GATGAAAATNAAAA---C-AAAT-TAATTTA---T----TTTA-TAAGTAAAATGAA-TACAAT-T---ACCGTATGGAATGTAATTTATTCCCATGATTTCTCAATTAAG-TCC---------------AAAACAG-TGAGG-----AA-----TG-T--AT-AGANTTATATNGG-----------GAGGG---ANN---ATAT----AT-TTCGACTTTT--GAACATCATA-GAAAATTTGCA
gi|1 : TGAAAATGAGAAAACC-AAATGTAGTTTA---TGTGTTTTA-TA-GTAAAATGAT-TACAAC-TG--ACTATAGGGAATGTAATTTATCCCCAATATTTTGCAA----G-TCC---------------AAAAGAG-TGAGG-----AAAAT--TAAT--AT-AGATTAAT-TAGGATTACAATACAGAGGG---ATA---ACATCTCAAT-TTCAACTTTT--GAACATCATA-GAAAGTTTGCA
gi|10 : AC---AAGCTTG-TTT-------C--AGAAATG---ATGAAAATGAAAA---C-AAAT-TATTTTG---TC---TTTG-TAAGTAAAATAAAAGATATT-T---ACCATATGAAATATAATTTATTTCAATAAGTTTTCAATTagttcctaataatagtaattataggaattttataattgtacttatcaaataataaaacccaaccaaacaaaaactctttgtttgtgcaact
gi|11 : ttgttACTTGTTATAAAC---A--CTTT-TTT-------C--AAAAATG---ATTAAAATGAAA----------------------------------GTAAAATGAT-TACAAT-TT--AC--TATAGAGAGTAATTTATTTCTATGATTTCTTAATTAAG-TTA---------------AAAttgttg
gi|12 : acAG-T-AGG-----AAAAATTTG-T--AT-AGAGTTATATAGG-----------AAGAG---ATA---ATTT----AT-TTCAGCTTTT--GGACAACATA-GAAAATTTACA
gi|13 : caagcaTAGG-----------GAGGG---GTG---ATAT----AT-TTCGACTTTTTAAAACATCATA-GAAAATTTACAa
gi|14 : T-T---ACCGTATGGAATGAAATGTATTCTCATGAACTCACAATTAAG-CCC---------------AAAACAGCTGAGA-----AACTT--TG-TACAT-AGGTTTagtctgattttaagaactttatttttaacat
gi|2 : atACTTGCTACAAAC------TTTT-TTTTTATATTA--AAAAATG---ATAAATATGACAA---CTAAAT-CAATGT----T----TTCA-TAAGTAAAGCGAT-GGCAAT-T---ACCGTAAGGATCACAATTTAGCTACTTGATTCCTCGACGAAG-CCC---------------AACACAG-TTAGG------A-----T---------GAC--ATATAAG-----------GAGGG---A
gi|3 : c-AAAT-TCAT--A---T----TTTAGTACGTGAAATGAA-TTTAAT-TT--ACTGTGTGGAGT---ATGCATTTCCATGGCTACTCAATGAAG-TCC---------------AAAAAAG-TAAGA-----AAAATC-TA-T--GT-AGATTCATATAAA-----------GAGGG---ACA---ATAT----AT-TTCAAATTTT--GAACATCATA-GAAAATTTACAttttggggtgaaaatttacgaccccttattactttcgtacttattgcaaccaaactaagccaaaaaatatatagcaaccaatgcatccatttt
gi|4 : TTGCTACAAACTTTAAAAAGT-TTT-------A--AAAA---T-GATGAAAATGAAAA---T-G--C-TA-TTTA---CAC--TTCA-CAAGAGAGATGAA-CACAAT-TT--ACCAT-TCTA--GTCATTTGTTCCCATGGTTTCTCAATTGAGATCCCCCCTCAAAAAAAAAAAAACAG-TGGGG-----GAAATT-TG-T--AT-AGGGTTAAGTAGA-----------GAGAGTTAAAT---AAAT----ATATTCGAC--TT--GAACACCATA-GGAagcccttatttctgaaatattttgtacttactacatgtacaagcaagcaaacccaaaaaatagatatcaacttatgcaccatttttt
gi|5 : ACTTGCTGCAAAC---AAACTCT-TTC-------A--AAAAACGTTAATGAAAATTAAAA---C-AGAT-TAATTTA---T----TT-A-TAAGTAAAATGAA-TACAAT-T---ATCATCTGGAATATAATTCATTCCCATGATTTCTCAATTAAG-TTG---------------AAAACAG-CAAGG------G-----TG-T--AT-AGAGTAACATTGA-----------GAGAA---GCC---ATAT----GT-TTCAACTTCG--GAACATCACA-GAGAATTTGTAtttaagatcaa
gi|6 : ---T----TTT--TAA-TAAAGTGAA-TACAGT-TTGAAATGTATATA-CGTAATATATTCCCATGATTCCTCAATTAAG-TCC---------------AAA---------------AA-----TT-T--ATAAGATTTGTTTAGT-----------GA--------A---ATAT----AT-TTCAACTTTT--GACCATCATACG--AATTTGCA
gi|7 : ATGAA-TTCAAT-TT--ACTTTATATA--GTA------TCCCATAATTTT---ATAAAG-TCC---------------ACAAGAG-AGAGGGGGGAAA-----T--T--A--AGGCTTATACAGG-----------GAGGG---ATAGTTATGT----AT-TTCAACATTT--GAA---CATA-GAAAATTttttgtccttgcgattttta
gi|8 : AATGT---ATCGTATGGAATGTAATTCATTCCCATGGTTTCTCAATTAAG-TCC---------------AAAGTGG-TGGTT-----AACATT-TG-T--AT-AGAGGTATATTGG-----------TAGGG---GTA---ATAT----AT-TTCAACTGTG--AAAAATCTCA-CAAATTTTatcaagttcaagttattttt
gi|9 : TTGCTACAA--------CTTCGTTT-------ATTCAAAGT-T-GATAAAAGATGACA---C-AA---TAATTTAAGTT----TTTG-TAAGTATAAGGAA-TACAATAT---ACCATGTGGAACATAA------CTGATGATTT-TCAATTAAG-a
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTTACATTTGTACTTATTAAAACTAAACTAAGCCAAAAATATATATCAACCTATGCATCCAT
Unaligned ( gi|16 ): TTTTTTTATGAAACATATTTAGTTGGTTTTTCATTTTCATCATTTTCATGATTTTTGA
Alignments
lowQualScore : 222222 2222222222 2222 33333333333333333333333333 11 222222222222222 11111111111111111 11111111111
lowQualScore : 777777 6 9999999999 1 9999 5 88888888888888888888888888 999 1 3 555 0 55 1 3 555555555555555 2 444 99999999999999999 4 1 0 1 99999999999 8888 777 9999 4 66 4
lowQualScore : ...... . .......... . .... . .......................... ... . . ... . .. . . ............... . ... ................. . . . . ........... .... ... .... . .. .
lowQualScore : 555555 7 8888888888 7 8888 7 11111111111111111111111111 333 8 3 888 8 88 2 6 000000000000000 9 777 22222222222222222 0 0 1 0 00000000000 5555 888 4444 4 11 4
consensus : ACTTGCTACAAAC---AAACTTT-TTT-------A--AAAAATGT-GATGAAA-ATGAAAA---C-AAAT-TAATTTA---T----TTTA-TAAGTAAAATGAATACA-ATTT--ACCGTATGGAACGTAATTTATTCCCATGATTTCTCAATTAAG-TCC---------------AAAACAG-TGAGGA---AAA--T-TG-T--AT-AGANTTATATAGG-----------GAGGG----ATA---ATAT----AT-TTCAACTTTT--GAACATCATA-GAAAATTTGCA
Reference ( family-855 ) : ACTTGCTACAAAC---AAACTTT-TTT-------A--AAAAATGT-GATGAAA-ATGAAAA---C-AAAT-TAATTTA---T----TTTA-TAAGTAAAATGAATACA-ATTT--ACCGTATGGAACGTAATTTATTCCCATGATTTCTCAATTAAG-TCC---------------AAAACAG-TGAGGA---AAA--T-TG-T--AT-AGANTTATATAGG-----------GAGGG----ATA---ATAT----AT-TTCAACTTTT--GAACATCATA-GAAAATTTGCA
gi|1 : TGAAA-ATGAGAAAACC-AAATGTAGTTTA---TGTGTTTTA-TA-GTAAAATGATTACA-ACTG--ACTATAGGGAATGTAATTTATCCCCAATATTTTGCAA----G-TCC---------------AAAAGAG-TGAGGA---AAA--T-TAAT--AT-AGATTAAT-TAGGATTACAATACAGAGGG----ATA---ACATCTCAAT-TTCAACTTTT--GAACATCATA-GAAAGTTTGCA
gi|10 : AC---AAGCTTG-TTT-------C--AGAAATG---ATGAAA-ATGAAAA---C-AAAT-TATTTTG---TC---TTTG-TAAGTAAAATAAA-AGATATTT--ACCATATGAAATATAATTTATTTCAATAAGTTTTCAATTagttcctaataatagtaattataggaattttataattgtacttatcaaataataaaacccaaccaaacaaaaactctttgtttgtgcaact
gi|11 : ttgttACTTGTTATAAAC---A--CTTT-TTT-------C--AAAAATG---ATTAAA-ATGAAA----------------------------------GTAAAATGATTACA-ATTT--AC--TATAGAGAGTAATTTATTTCTATGATTTCTTAATTAAG-TTA---------------AAAttgttg
gi|12 : acAG-T-AGGA---AAAATT-TG-T--AT-AGAGTTATATAGG-----------AAGAG----ATA---ATTT----AT-TTCAGCTTTT--GGACAACATA-GAAAATTTACA
gi|13 : caagcaTAGG-----------GAGGG----GTG---ATAT----AT-TTCGACTTTTTAAAACATCATA-GAAAATTTACAa
gi|14 : -ATTT--ACCGTATGGAATGAAATGTATTCTCATGAACTCACAATTAAG-CCC---------------AAAACAGCTGAGAA---ACT--T-TG-TACAT-AGGTTTagtctgattttaagaactttatttttaacat
gi|2 : ACTTGCTACAAAC------TTTT-TTTTTATATTA--AAAAATG---ATAAAT-ATGACAA---CTAAAT-CAATGT----T----TTCA-TAAGTAAAGCGATGGCA-ATT---ACCGTAAGGATCACAATTTAGCTACTTGATTCCTCGACGAAG-CCC---------------AACACAG-TTAGG------A--T-----------GAC--ATATAAG-----------GAGGG----AT
gi|3 : c-AAAT-TCAT--A---T----TTTAGTACGTGAAATGAATTTA-ATTT--ACTGTGTGGA--GTA-TGCATTTCCATGGCTACTCAATGAAG-TCC---------------AAAAAAG-TAAGAA---AAA--TCTA-T--GT-AGATTCATATAAA-----------GAGGG----ACA---ATAT----AT-TTCAAATTTT--GAACATCATA-GAAAATTTACAtttggggtgaaaatttacgaccccttattactttcgtacttattgcaaccaaactaagccaaaaaatatatagcaaccaatgcatccatttt
gi|4 : TTGCTACAAACTTTAAAAAGT-TTT-------A--AAAA---T-GATGAAA-ATGAAAA---T-G--C-TA-TTTA---CAC--TTCA-CAAGAGAGATGAACACA-ATTT--ACCAT-TCTA--GTCATTTGTTCCCATGGTTTCTCAATTGAGATCCCCCCTCAAAAAAAAAAAAACAG-TGGGGG---AAAT-T-TG-T--AT-AGGGTTAAGTAGA-----------GAGAGTTAAATA---A-AT----ATATTCGAC--TT--GAACACCATA-GGAagcccttatttctgaaatattttgtacttactacatgtacaagcaagcaaacccaaaaaatagatatcaacttatgcaccatttttt
gi|5 : ACTTGCTGCAAAC---AAACTCT-TTC-------A--AAAAACGTTAATGAAA-ATTAAAA---C-AGAT-TAATTTA---T----TT-A-TAAGTAAAATGAATACA-ATT---ATCATCTGGAATATAATTCATTCCCATGATTTCTCAATTAAG-TTG---------------AAAACAG-CAAGGG----------TG-T--AT-AGAGTAACATTGA-----------GAGAA----GCC---ATAT----GT-TTCAACTTCG--GAACATCACA-GAGAATTTGTAtttaagatcaa
gi|6 : ---T----TTT--TAA-TAAAGTGAATACA-GTTTGAAATGTATATA-CGTAATATATTCCCATGATTCCTCAATTAAG-TCC---------------A------------A---AAA--T-T--T--ATAAGATTTGTTTAGT-----------GA---------A---ATAT----AT-TTCAACTTTT--GACCATCATACG--AATTTGCA
gi|7 : ATGAATTCA-ATTT--ACTTTATATA--GTA------TCCCATAATTTT---ATAAAG-TCC---------------ACAAGAG-AGAGGGGGGAAA--T-TA-------AGGCTTATACAGG-----------GAGGG----ATAGTTATGT----AT-TTCAACATTT--GAA---CATA-GAAAATTttttgtccttgcgattttta
gi|8 : A-ATGT--ATCGTATGGAATGTAATTCATTCCCATGGTTTCTCAATTAAG-TCC---------------AAAGTGG-TGGTTA---ACAT-T-TG-T--AT-AGAGGTATATTGG-----------TAGGG----GTA---ATAT----AT-TTCAACTGTG--AAAAATCTCA-CAAATTTTatcaagttcaagttattttt
gi|9 : TTGCTACAA--------CTTCGTTT-------ATTCAAAGT-T-GATAAAAGATGACA----C-AA---TAATTTAAGTT----TTTG-TAAGTATAAGGAATACA-ATAT--ACCATGTGGAACATAA------CTGATGATTT-TCAATTAAG-a
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTTACATTTGTACTTATTAAAACTAAACTAAGCCAAAAATATATATCAACCTATGCATCCAT
Unaligned ( gi|16 ): TTTTTTTATGAAACATATTTAGTTGGTTTTTCATTTTCATCATTTTCATGATTTTTGA
Alignments
lowQualScore : 222222 2222222222 2222 33333333333333333333333333 11 222222222222222 11111111111111111 11111111111
lowQualScore : 777777 6 9999999999 1 9999 5 88888888888888888888888888 999 1 3 555 0 55 1 3 555555555555555 2 444 99999999999999999 4 1 0 1 99999999999 8888 777 9999 4 66 4
lowQualScore : ...... . .......... . .... . .......................... ... . . ... . .. . . ............... . ... ................. . . . . ........... .... ... .... . .. .
lowQualScore : 555555 7 8888888888 7 8888 7 11111111111111111111111111 333 8 3 888 8 88 2 6 000000000000000 9 777 22222222222222222 0 0 1 0 00000000000 5555 888 4444 4 11 4
consensus : ACTTGCTACAAAC---AAACTTT-TTT-------A--AAAAATGT-GATGAAA-ATGAAAA---C-AAAT-TAATTTA---T----TTTA-TAAGTAAAATGAATACA-ATTT--ACCGTATGGAACGTAATTTATTCCCATGATTTCTCAATTAAG-TCC---------------AAAACAG-TGAGGA---AAA--T-TG-T--AT-AGANTTATATAGG-----------GAGGG----ATA---ATAT----AT-TTCAACTTTT--GAACATCATA-GAAAATTTGCA
Reference ( family-855 ) : ACTTGCTACAAAC---AAACTTT-TTT-------A--AAAAATGT-GATGAAA-ATGAAAA---C-AAAT-TAATTTA---T----TTTA-TAAGTAAAATGAATACA-ATTT--ACCGTATGGAACGTAATTTATTCCCATGATTTCTCAATTAAG-TCC---------------AAAACAG-TGAGGA---AAA--T-TG-T--AT-AGANTTATATAGG-----------GAGGG----ATA---ATAT----AT-TTCAACTTTT--GAACATCATA-GAAAATTTGCA
gi|1 : TGAAA-ATGAGAAAACC-AAATGTAGTTTA---TGTGTTTTA-TA-GTAAAATGATTACA-ACTG--ACTATAGGGAATGTAATTTATCCCCAATATTTTGCAA----G-TCC---------------AAAAGAG-TGAGGA---AAA--T-TAAT--AT-AGATTAAT-TAGGATTACAATACAGAGGG----ATA---ACATCTCAAT-TTCAACTTTT--GAACATCATA-GAAAGTTTGCA
gi|10 : AC---AAGCTTG-TTT-------C--AGAAATG---ATGAAA-ATGAAAA---C-AAAT-TATTTTG---TC---TTTG-TAAGTAAAATAAA-AGATATTT--ACCATATGAAATATAATTTATTTCAATAAGTTTTCAATTagttcctaataatagtaattataggaattttataattgtacttatcaaataataaaacccaaccaaacaaaaactctttgtttgtgcaact
gi|11 : ttgttACTTGTTATAAAC---A--CTTT-TTT-------C--AAAAATG---ATTAAA-ATGAAA----------------------------------GTAAAATGATTACA-ATTT--AC--TATAGAGAGTAATTTATTTCTATGATTTCTTAATTAAG-TTA---------------AAAttgttg
gi|12 : acAG-T-AGGA---AAAATT-TG-T--AT-AGAGTTATATAGG-----------AAGAG----ATA---ATTT----AT-TTCAGCTTTT--GGACAACATA-GAAAATTTACA
gi|13 : caagcaTAGG-----------GAGGG----GTG---ATAT----AT-TTCGACTTTTTAAAACATCATA-GAAAATTTACAa
gi|14 : -ATTT--ACCGTATGGAATGAAATGTATTCTCATGAACTCACAATTAAG-CCC---------------AAAACAGCTGAGAA---ACT--T-TG-TACAT-AGGTTTagtctgattttaagaactttatttttaacat
gi|2 : ACTTGCTACAAAC------TTTT-TTTTTATATTA--AAAAATG---ATAAAT-ATGACAA---CTAAAT-CAATGT----T----TTCA-TAAGTAAAGCGATGGCA-ATT---ACCGTAAGGATCACAATTTAGCTACTTGATTCCTCGACGAAG-CCC---------------AACACAG-TTAGG------A--T-----------GAC--ATATAAG-----------GAGGG----AT
gi|3 : c-AAAT-TCAT--A---T----TTTAGTACGTGAAATGAATTTA-ATTT--ACTGTGTGGA--GTA-TGCATTTCCATGGCTACTCAATGAAG-TCC---------------AAAAAAG-TAAGAA---AAA--TCTA-T--GT-AGATTCATATAAA-----------GAGGG----ACA---ATAT----AT-TTCAAATTTT--GAACATCATA-GAAAATTTACAtttggggtgaaaatttacgaccccttattactttcgtacttattgcaaccaaactaagccaaaaaatatatagcaaccaatgcatccatttt
gi|4 : TTGCTACAAACTTTAAAAAGT-TTT-------A--AAAA---T-GATGAAA-ATGAAAA---T-G--C-TA-TTTA---CAC--TTCA-CAAGAGAGATGAACACA-ATTT--ACCAT-TCTA--GTCATTTGTTCCCATGGTTTCTCAATTGAGATCCCCCCTCAAAAAAAAAAAAACAG-TGGGGG---AAAT-T-TG-T--AT-AGGGTTAAGTAGA-----------GAGAGTTAAATA---A-AT----ATATTCGAC--TT--GAACACCATA-GGAagcccttatttctgaaatattttgtacttactacatgtacaagcaagcaaacccaaaaaatagatatcaacttatgcaccatttttt
gi|5 : ACTTGCTGCAAAC---AAACTCT-TTC-------A--AAAAACGTTAATGAAA-ATTAAAA---C-AGAT-TAATTTA---T----TT-A-TAAGTAAAATGAATACA-ATT---ATCATCTGGAATATAATTCATTCCCATGATTTCTCAATTAAG-TTG---------------AAAACAG-CAAGGG----------TG-T--AT-AGAGTAACATTGA-----------GAGAA----GCC---ATAT----GT-TTCAACTTCG--GAACATCACA-GAGAATTTGTAtttaagatcaa
gi|6 : ---T----TTT--TAA-TAAAGTGAATACA-GTTTGAAATGTATATA-CGTAATATATTCCCATGATTCCTCAATTAAG-TCC---------------A------------A---AAA--T-T--T--ATAAGATTTGTTTAGT-----------GA---------A---ATAT----AT-TTCAACTTTT--GACCATCATACG--AATTTGCA
gi|7 : ATGAATTCA-ATTT--ACTTTATATA--GTA------TCCCATAATTTT---ATAAAG-TCC---------------ACAAGAG-AGAGGGGGGAAA--T-TA-------AGGCTTATACAGG-----------GAGGG----ATAGTTATGT----AT-TTCAACATTT--GAA---CATA-GAAAATTttttgtccttgcgattttta
gi|8 : A-ATGT--ATCGTATGGAATGTAATTCATTCCCATGGTTTCTCAATTAAG-TCC---------------AAAGTGG-TGGTTA---ACAT-T-TG-T--AT-AGAGGTATATTGG-----------TAGGG----GTA---ATAT----AT-TTCAACTGTG--AAAAATCTCA-CAAATTTTatcaagttcaagttattttt
gi|9 : TTGCTACAA--------CTTCGTTT-------ATTCAAAGT-T-GATAAAAGATGACA----C-AA---TAATTTAAGTT----TTTG-TAAGTATAAGGAATACA-ATAT--ACCATGTGGAACATAA------CTGATGATTT-TCAATTAAG-a
blockSeqs : TTTAAA G TTATATTA A GTTA G ACAAATTATTTTGTC TAG A T TGA AT T A CCCCTCAAAAAAAAA C CTG AAAAATTTGT A G A . TTAA GTT . A TA C
blockSeqs : AAA . ATT A TG . ACTAAATCAATGTT TG A . T GA T . . C TT AACTTTGTAC . T A . . . . . . .
blockSeqs : A . C A TG . ACAGATTAATTTAT CA C . T AT G . . A TA GGGGAAATTA . C A . . . . . . .
blockSeqs : . . A G G . CAATAATTTAAGTT CA A . T TC T . . C TG AAAATCTAT . T G . . . . . . .
blockSeqs : . . A . G . ATGCTATTTACAC TG A . T AT G . . C CA GAAATTTGT . G A . . . . . . .
blockSeqs : . . A A . T AT T . . G AG AACATTTGT . G T . . . . . . .
blockSeqs : T A . T AC T . . T TG AAAATTT . T A . . . . . . .
blockSeqs : . . . T C A . . . T GTGT . C A . . . . . . .
blockSeqs : . T . T . . . AT . G . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqCons : A***** ACAAATTAATTTAT************ AAAATTTGT******** *********** ****
originalCons : ACTTGCTACAAAC---AAACTTT-TTT-------A--AAAAATGT-GATGAAA-ATGAAAA---C-AAAT-TAATTTA---T----TTTA-TAAGTAAAATGAATACA-ATTT--ACCGTATGGAACGTAATTTATTCCCATGATTTCTCAATTAAG-TCC---------------AAAACAG-TGAGGA---AAA--T-TG-T--AT-AGANTTATATAGG-----------GAGGG----ATA---ATAT----AT-TTCAACTTTT--GAACATCATA-GAAAATTTGCA
finalCons : ACTTGCTACAAACA-----CTTT-TTT-------A--AAAAATGT-GATGAAA-ATGAAAACAAATTAATTTAT------------TTTA-TAAGTAAAATGAATACA-ATTT--ACCGTATGGAACGTAATTTATTCCCATGATTTCTCAATTAAG-TCC---------------AAAACAG-TGAGGAAAATTTGT--------AT-AGANTTATATAGG-----------GAGGG----ATA---ATAT----AT-TTCAACTTTT--GAACATCATA-GAAAATTTGCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTTACATTTGTACTTATTAAAACTAAACTAAGCCAAAAATATATATCAACCTATGCATCCAT
Unaligned ( gi|16 ): TTTTTTTATGAAACATATTTAGTTGGTTTTTCATTTTCATCATTTTCATGATTTTTGA
Alignments
lowQualScore : 33333333333333333333333333 2222 3333333333333333333333333 11 222222222222222 11111111111
lowQualScore : 11111111111111111111111111 1 9999 5 3333333333333333333333333 999 1 3 555 0 55 1 3 555555555555555 2 4 7777 0 55 3 1 0 1 99999999999 8888 777 9999 4 66 4
lowQualScore : .......................... . .... . ......................... ... . . ... . .. . . ............... . . .... . .. . . . . ........... .... ... .... . .. .
lowQualScore : 00000000000000000000000000 7 8888 7 1111111111111111111111111 333 8 3 888 8 88 2 6 000000000000000 9 0 4444 9 55 2 0 1 0 00000000000 5555 888 4444 4 11 4
consensus : ACTTGCTACAAACA--CTT------T-TTT------A--AAAAATGT-GATGAAA-ATGAAAA---C-AAAT-TAATTTA---T----TTTA-TAAGTAAAATGAATACA-ATTT--ACCGTATGGAACGTAATTTATTCCCATGATTTCTCAATTAAG-TCC---------------AAAACAG-TGAGGA---AAATTTGT--ATAGANTTATATAGG-----------GAGGG----ATA---ATAT----AT-TTCAACTTTT--GAACATCATA-GAAAATTTGCA
Reference ( family-855 ) : ACTTGCTACAAACA--CTT------T-TTT------A--AAAAATGT-GATGAAA-ATGAAAA---C-AAAT-TAATTTA---T----TTTA-TAAGTAAAATGAATACA-ATTT--ACCGTATGGAACGTAATTTATTCCCATGATTTCTCAATTAAG-TCC---------------AAAACAG-TGAGGA---AAATTTGT--ATAGANTTATATAGG-----------GAGGG----ATA---ATAT----AT-TTCAACTTTT--GAACATCATA-GAAAATTTGCA
gi|1 : TGAAA-ATGAGAAAACC-AAATGTAGTTTA---TGTGTTTTA-TA-GTAAAATGATTACA-ACTG--ACTATAGGGAATGTAATTTATCCCCAATATTTTGCAA----G-TCC---------------AAAAGAG-TGAGGA---AAATTAAT--ATAGATTAAT-TAGGATTACAATACAGAGGG----ATA---ACATCTCAAT-TTCAACTTTT--GAACATCATA-GAAAGTTTGCA
gi|10 : TTGTTACAAGC----TT------G-TTT------C--AGAAATG---ATGAAA-ATGAAAA---C-AAAT-TATTTTG---TC---TTTG-TAAGTAAAATAAA-AGATATTT--ACCATATGAAATATAATTTATTTCAATAAGTTTTCAATTagttcctaataatagtaattataggaattttataattgtacttatcaaataataaaacccaaccaaacaaaaactctttgtttgtgcaact
gi|11 : ACTTGTTATAAACA--CTT------T-TTT------C--AAAAATG---ATTAAA-ATGAAA----------------------------------GTAAAATGATTACA-ATTT--AC--TATAGAGAGTAATTTATTTCTATGATTTCTTAATTAAG-TTA---------------AAAttgttg
gi|12 : acAG-TAGGAA---AAATTTGT--ATAGAGTTATATAGG-----------AAGAG----ATA---ATTT----AT-TTCAGCTTTT--GGACAACATA-GAAAATTTACA
gi|13 : caagcaTAGG-----------GAGGG----GTG---ATAT----AT-TTCGACTTTTTAAAACATCATA-GAAAATTTACAa
gi|14 : -ATTT--ACCGTATGGAATGAAATGTATTCTCATGAACTCACAATTAAG-CCC---------------AAAACAGCTGA-GA---AACTTTGTACATAGGTTTagtctgattttaagaactttatttttaacat
gi|2 : ACTTGCTACAAACT--TTT------T-TTTTATATTA--AAAAATG---ATAAAT-ATGACAA---CTAAAT-CAATGT----T----TTCA-TAAGTAAAGCGATGGCA-ATT---ACCGTAAGGATCACAATTTAGCTACTTGATTCCTCGACGAAG-CCC---------------AACACAG-TTAGG------AT---------GAC--ATATAAG-----------GAGGG----AT
gi|3 : c-AAAT-TCAT--A---T----TTTAGTACGTGAAATGAATTTA-ATTT--ACTGTGTGGA--GTA-TGCATTTCCATGGCTACTCAATGAAG-TCC---------------AAAAAAG-TAAGAA---AAATCTAT--GTAGATTCATATAAA-----------GAGGG----ACA---ATAT----AT-TTCAAATTTT--GAACATCATA-GAAAATTTACAtttggggtgaaaatttacgaccccttattactttcgtacttattgcaaccaaactaagccaaaaaatatatagcaaccaatgcatccatttt
gi|4 : TTGCTACAAAC---TTTAAAAAGT-TTT------A--AAAA---T-GATGAAA-ATGAAAA---T-G--C-TA-TTTA---CAC--TTCA-CAAGAGAGATGAACACA-ATTT--ACCAT-TCTA--GTCATTTGTTCCCATGGTTTCTCAATTGAGATCCCCCCTCAAAAAAAAAAAAACAG-TGGGGG---AAATTTGT--ATAGGGTTAAGTAGA-----------GAGAGTTAAATA---A-AT----ATATTCGAC--TT--GAACACCATA-GGAagcccttatttctgaaatattttgtacttactacatgtacaagcaagcaaacccaaaaaatagatatcaacttatgcaccatttttt
gi|5 : ACTTGCTGCAAACAAACTC------T-TTC------A--AAAAACGTTAATGAAA-ATTAAAA---C-AGAT-TAATTTA---T----TT-A-TAAGTAAAATGAATACA-ATT---ATCATCTGGAATATAATTCATTCCCATGATTTCTCAATTAAG-TTG---------------AAAACAG-CAAGGG--------TGT--ATAGAGTAACATTGA-----------GAGAA----GCC---ATAT----GT-TTCAACTTCG--GAACATCACA-GAGAATTTGTAtttaagatcaa
gi|6 : ---T----TTT--TAA-TAAAGTGAATACA-GTTTGAAATGTATATA-CGTAATATATTCCCATGATTCCTCAATTAAG-TCC---------------A------------A---AAATTTAT--A-AGATTTGTTTAGT-----------GA---------A---ATAT----AT-TTCAACTTTT--GACCATCATACG--AATTTGCA
gi|7 : ATGAATTCA-ATTT--ACTTTATATA--GTA------TCCCATAATTTT---ATAAAG-TCC---------------ACAAGAG-AGAGGGGGGAAATT-----A-AGGCTTATACAGG-----------GAGGG----ATAGTTATGT----AT-TTCAACATTT--GAA---CATA-GAAAATTttttgtccttgcgattttta
gi|8 : A-ATGT--ATCGTATGGAATGTAATTCATTCCCATGGTTTCTCAATTAAG-TCC---------------AAAGTGG-TGGTTA---ACATTTGT--ATAGAGGTATATTGG-----------TAGGG----GTA---ATAT----AT-TTCAACTGTG--AAAAATCTCA-CAAATTTTatcaagttcaagttattttt
gi|9 : TTGCTACA---A--CTT------CGTTT------ATTCAAAGT-T-GATAAAAGATG-ACA---C-AA---TAATTTAAGTT----TTTG-TAAGTATAAGGAATACA-ATAT--ACCATGTGGAACATAA------CTGATGATTT-TCAATTAAG-a
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTTACATTTGTACTTATTAAAACTAAACTAAGCCAAAAATATATATCAACCTATGCATCCAT
Unaligned ( gi|16 ): TTTTTTTATGAAACATATTTAGTTGGTTTTTCATTTTCATCATTTTCATGATTTTTGA