lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 2 1111 1 1111 1 99999 1 1 1 1111111111 2 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 888888888888888888888888888 33333333333333333333333333333 4 2222 2 1 2222222222 444444444444444 222 55555555555555555555 11111 3333333333 1111 111111111 11111111 1111 1 333333333333333333 1111 4444444444444 3333 111 111111 22 111 33333333333333333333333333333 11 2222222222222222222 55 1 66666666666666
lowQualScore : 4 99 4 4 4 4 1 4 2222 4 4 4 55 4 2 4 7 4 9999 4 4 66 4 4 4 777 5 888 0000 5 1 66666 66 5 5 66 66 0 5 0 7777777777 5 5 888 777 2 44 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 555 5 5 888888888888888888888888888 5 4 4 4 666 55555555555555555555555555555 0 7 6666 66 1 66 1 0 4 4 4 66 4 8 4 6 4 9999 4 3333333333 444 8 666666666666666 777 66 666 8 66 00000000000000000000 4 4 8 3 22222 5555555555 2 0 3333 99 2 4 4 8 4 4 4 444444444 11111111 4444 3 4 88888 4 777777777777777777 4 555 777 0000 4 4 4 4 4 1111111111111 4 99 4 4 7777 4 3 55 000 333333 55 888 3 8 33 7777 000 88888888888888888888888888888 6 77 6 6 3 0 555 3 3 6 6 44 9999999999999999999 7 55 3 7 22 1 4 5 4 0 55555555555555 4 1 4
lowQualScore : . .. . . . . . . .... . . . .. . . . . . .... . . .. . . . ... . ... .... . . ..... .. . . .. .. . . . .......... . . ... ... . .. ......................................................................................................................................... ... . . ........................... . . . . ... ............................. . . .... .. . .. . . . . . .. . . . . . .... . .......... ... . ............... ... .. ... . .. .................... . . . . ..... .......... . . .... .. . . . . . . . ......... ........ .... . . ..... . .................. . ... ... .... . . . . . ............. . .. . . .... . . .. ... ...... .. ... . . .. .... ... ............................. . .. . . . . ... . . . . .. ................... . .. . . .. . . . . . .............. . . .
lowQualScore : 4 22 0 0 0 0 9 0 7777 0 0 0 55 0 5 0 5 0 4444 4 4 11 4 4 4 888 0 888 1111 7 4 77777 99 0 0 99 99 0 0 0 1111111111 0 0 888 000 0 66 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 999 7 0 222222222222222222222222222 0 0 0 0 555 99999999999999999999999999999 0 4 2222 11 9 11 0 1 4 4 4 11 4 9 4 0 4 4444 4 9999999999 999 9 777777777777777 888 33 666 9 11 88888888888888888888 4 4 9 2 66666 4444444444 0 1 9999 99 4 4 4 9 4 4 4 333333333 33333333 6666 3 4 77777 4 000000000000000000 4 777 888 8888 4 4 4 4 4 7777777777777 4 00 4 4 8888 4 6 00 000 555555 00 555 6 2 00 5555 000 22222222222222222222222222222 2 33 2 2 1 4 444 1 1 2 2 66 7777777777777777777 3 00 6 3 66 1 0 4 0 8 22222222222222 4 9 4
consensus : CCACATAAAA-TAA-AT-TGT-C-T-GGTTCT-CG-GGAAA-T-TG-A-T-TTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC-----AGGGTA--GGGAT-TTTATTTT--TT--G-TTT-TTAA-ATCA-------A--A-C-GA---TAT--AAA-ACCTGA----A-TA---ATTCAA-C-AT-ATT--TACG-AAATGTAA-TT-------ATTTCA-AGG-GCAATC-AA-ACT-TG--TA-TGC-CGTAAA--TGAC--TCAG-TA---AATAAAAAATTGTTG----AC-T--AAA-TAA-ATGTTTGTTG-GG---A-TATA-A-T-A--------G-G-T-AAGG-GTGACCC-ACAA-A-A-TCA----A----A---ACTCT-N-CTGATT--CCCCACC-TAAAAGTGAA--TGAAT--AAGAAAA--TA-TCCT-TT-GA-CA--T-T-ATT-TA-TGT-CTA----A-A---T--T---TT-T-CCC-AA----TTA--TACG-AGTAT---T-TCA-TTGT-ATTA--AT-AAA----CC-A-GTCCAATA-AA-TTTAAA-TTGTTATT-CA-TAAA---TC-TGA-TGAAAA----CAT-AACA-TTGAA-A-C-GG-T-A---A-----AC-C-AT-A-TGTTT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--A-AAATCC-TCT-GCA-T-T-AAAA---AG-A-T-A-ATGAAA-G-TA-ATCAT--------A---TTT-AAATTGCA-CCC-TTTA-TG---AGAA-A-T--ACTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--ATA--GGC---ATA-----A----AAAN--CAAC--TACT-G-AT-GA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGA-GGAGA--TAACT-CTTACATTTTTTC-GGGATAACT--C-TTGCAN-A--TAT-GATCGATGCGCGGC
Reference ( gi|2 ) : CCACATAAAA-TAA-AT-TGT-C-T-GGTTCTTCG-GGAAA-T-TG-A-T-TTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GCCTAATAGGGTA--GG-AT-TTTATTTT--TT--G-TTT-TTAA-ATCA-------A--A-C-GA---TAT--AAATACCTGA----A-TAGGGATTCAA-C-AT-ATACATACG-AAATGTAAATTGTGACGTATGTCATGGG-GCAATC-AA-ACT-TG-GTA-TGC-CGTAGAGGTGACG-TCAGGTA---AATAGAAGATTGTTGTTTTAC-T--CAA-TAA-ATGTTTGTTG-GG---A-TATA--------------G-G-T-AAGG-GTGACCC-ACAA-A-A-TCA----A----A---ACTCT-C-CTGATTT-CCCCACCGTAAAAGTGAA--TGAAT--AAGAAAA--TAATCCT-TT-GA-CA--T-T-ATT-TAATGT-CTA----A-A---T--T---TT-T-CCC-A-----TTC--TACGCAGTAT---T-TCA-T-GT-ATTA--A--AAA----C--A-GTCCAATA-AA-TTTAAA-TTGTTATT-CA-TAAA---TC-TGAATGAAAA----CAT-AACA-TTGAA-A-C-GG-T-A---A-----AC-C-AT-A-TGTTT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--A-AAATCC-TCT-GCA-T-T-AAAA---AG-A-T-A-ATGAAA-G-TA-ATCA---------A---TTT-AAATTGCA-CCC-TTTA-T----AGAA-A-T--ACTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG-AATA--GGC---ATA-----A----AAAC--CAAC--TACTGG-AT-GA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGA-GGAGAATTAACT-CTTAAATTTTTTC-GGGATAACT--CTTTGCAA-A--TAT-GATCGATGTGCGGC
gi|5 : CCACATAAAA-TAA-AT-TGT-CCT-GGTTTCTCG-GGAAA-T-TG-A-T-TTTTTGAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GATTTT-AT-TT-TT---TGTTT-TT---A
gi|6 : CCACATAAAA-TAA--T-TGT-C-T-GGTTCT--G-GGAAA-T-TG-A-T-TTT--GAAGAAAGT-G-GGTAGG-TAG----G-TA-GT--GGTTTT-AT-TTCTT---TGTTT-TT---ATTTCCC--A-A-AGA-GC----GAGGGTA--GG-GA-TTTATTTT--TT--GTTTT-TTAATATC-----------A-C-GA---TAT--AAA-A--TGA----A--ATG--TTCAATC-AT-AT--TTACG-GAATGT---TTA------ATTTCAGAGGTGC-ATC-GA-AGT-TG-CTA-TG--CGTAGA--TGAC-------TG---AGTATAAAATTGTTG----AC-T--AAA-T-A-ATGTTTGTTG-GG------ATA--------------G-GTT-AAGG-G-GACCC-AC-A-A-A-TCA----A----GATTACTAT-T-CCGATCGATCCCACC-TAAATGTG-A--TG-AT--AAGAAAA--T-ATACT-TT-GA-CA--T-T-ATC-TATTCC-CTAAAATA-A---T--T---TT-C-CCCAA-----TTA--TACG-AGTAA---T-TCATT-GT-ATTT--ATTAAC----C--A-GTCCA--A-AA-TTTAAA-TTGTT-TT------AA---T--TG-ATG-AAA----CATAAACAGTTGAA-A-CGGG-T-A---A-----AC------A-TGATT-TAG-CTTGG-ATTATCCCTC-TGCTTTAA--A-AAATTT-TCTGGCA-T-T-AAAA---A--A-T-A-ATGAAA-G-TA-ATAA---------A---TTTAAAATTGCA-CCC-TTTAGT----GAAA-A-T--ACT-A-C-A-A-----CAA---GA-T-TTCC-TTCCAAG-AGTA---AC---ATA-----A----AGAA--CAGA--TA-TGG-AT-GG--CG-TA-AT-CTTG---AG-CTC-CAAACTA-CTCAA--TC--------A-aatcaaacgatatctaaaacctgaaatgattcaacatatttacgaaattaatttcaagggcatcaacttgtatgccacagatgactcagtaaataaactgttgactaaaataaatgtttgttgggtaggtacagtaagggtgacccaccaattcaatactcttgattccccacctaaaagtgatgaataagaatatcctttgacattatttatggtctaaatattttcccaattatacgagtttcattgtattaataaaccagtccataaatttaaattttatttcataaaatctctgatgaaacataacattgaaacggtaaaacgcataatgttgagctggaatttctcttctttaaaaatcctctgcattaaaaaaataatgaaagtaatcatattttcatatttaaattgtcccttatgagaaatactaacacaaatgcgattccttcaagataggcataaaaatacaatacttgatgaggttactacttgagctcacaaactactcattcacgagtagcgtcaaggagataactcttacattttttcgggataactcttgcaatatgatcgatgcagc
gi|10 : CCACATAAAA-TAA-AT-TGT-C-T-GGTCTCTCG-GGGAA-A-TG-A-T-T-----GA-AAAGT-G-GGTAGG-TAGTCAAG--A-GG--GTTTAT-TT-TT-TT---TGTTTCTT---ATTT-CT--G-A-AGA-GC-----GAGGTA--GG-AGATTTATTTTGGTT--G-TTT-TAAA-ATCA-------A--A-CGGA---TAT---AATACCTGA----A-TATG--TTCAA-C-AT-AT--TTACG-AAA-GTAATCT----------TCA-AGG-GCAATC-GACACT-TGTATA-TGC----ACAGATGA---TCA-GTA---AATA-AAAACTGTTG----AC-T--AAA-ATA-ATGTTTTTTG-GG---ATTGCA--------------A-G-T-A--G-GTGACCC-ACAA-G-ATTCG----A----A---Ac
gi|16 : gCCACATAAAAATAATAT-TGTTC-T-TGGTCT-CGTGGCAA-TGTGCA-T-TTT--GAA-AA-GTGG---TAGGATTG----G-TA-GT--GGTTTT-AT-TT-TTGATTATTT-AT---ATATCCC--ATA-AGAAGCG----AGGGTA--GG-GT-TTTATTTT--TT--GATTTATTAACACCATAGTCATA--A-C-TATTGTAT--AAAAACCT
gi|22 : gCCACCTAAAA-TAA-TT-TCT-C-T-GGTTCTT-G-GACAA-C-TG-A-T-TTT--GAA-
gi|1 : gACATAAAA-TAA-AT-TGT-C-T-GGTTCT-CG-GGAAA-T-TG-A-T-TTT--GAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC---A-AGGGTA--GGGAT-TTTAATTT--TT--G-TTT-TTAA-ATCA-------A--A-C-GA---TAT--AAA-ACCTGA----AATA---ATTCAA-C-ATGAT---TACA-AAATGTAA-TT----------TCA-AGG-GCA-TC-A---CT-TG--TA-TGT--GTAAA--TGAC---TAG-TA---AA-ATAAAATTGGTGGACTA--T--GAA-TAA-ATGTTTGTTT-GA---G-TATATAATTACCTTCATTG-G-T-AAGGCGTGACCCTACAACA-A-TCAATTTA----A---ATACT-G-CTGA-TT-CCCCACC-TAAAAGTG-A--TGAAT--AAGAAAAACTACTCCT-TT-GA-CA--T-TCATT-TAATGT-CTA----A-A---T--TATCTT-T-CCCAA-----TTA--TACG-ACTAT---T-TCATT-GT-ATTAATA--AAA----CCAG-GTCC-ATA-AATTTTAAA-TTGTTATT-CATTAAA---TCGTG-ATGAAAACCATCAC-AGCA-TTGAA-AGC-GG-T-ATTTA-----AA-C-AT-AGTG-TT-GAGCCTGGA-A-T-TTCCTC------------------------GCA-T-T-AATA---AGAA-T-A-ATGAAA-A-TC-ATCAT--------A---TTT-AAATTGCACCCC-TTTA-TG---AGAA-A-T--ACTAA---ACA-----ACAT--GAGT-TTCC-TT-CAAGCAATAACGGCGTGATACCAAGA----AAATA-CAA---TATT-G-AT-GAGGGG-TA-CT-CTTG---AGCCTC-CAAACTA-CTC-AT-TC--------A-GAG-T-AA-AGT-AGCG--T-CAGA--GAGA--TAACT-CTTACA-TTTTTC-GGGATAACT--C-TTGCGATATTTAT-GATCGAT
gi|15 : ATAAAA--AA-ATATGT-C-T-G-TTCT-CG-GAAA-----G-A-T-TTT--GAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GTTGTTAAT-TT-TT---TG-TT-TT---ATTTC------A-AGA-G-----GAGGGTG--GG-AT-TTTATTTT--TTTGG-TTT-TTAA---TA-------A--A-C-GA---TAT--AAAAACTGAA----A-T---GATTCAA---AT--T---TACG--AATGTGATTTcgccgcgc
gi|18 : ggcaTAAAA-TAA-AT-TAT-C-T-GGTTCT-CA-GAAA---------T-TTT--GAA-AAAGTGT-G-TAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---caggac
gi|3 : ccAAA-TAA--T-TGT-C-T-GGTTCTCGG-GAAAA-TATG-AAT-TTT--GAA-AAAGTGG-G-TAGG-TAG----GATAAGG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCCCCA-A-AGA-GC-----AGGGTA--GGGAT-TTTAATTT--TT--G-TTT-TTAA-ATCA-------ATGA-C-GA---TA-----ATACA-GATCACA-TA-----TCAA-CCATGAT---TACA-AAATGTAA-TT----------TCAAGG-----AT--AA-ACT-TG--TA-TGT--GTAAA--TGAC---TAGATACAAAATAAAA-ATTGGTGGACTAT-G--AAA-TAA-ATGTTTGTTG-AG---A-TATATAATTACATTCATTG-G-T-AAGG-GTGACCC-ACAA-C-A-TCA----ATTTAA---ATACTGC-CTGATT--CCCCACC-TAA--GTGA---TGAAT--AAGAAAA--TACTCCT-TT-GA-CA--T-TCATT-TATTGT-CTA----A-A---TGAT---TT-T-CCC-AA----TTA--TACG-AGTAT---T-TCA-TTGT-ATTA--AT-AAA----CCAG-GTCCA-TA-AA-TTTAAAATTGTTATT-CA-TAAA---TCGTGA-TGACCAT---CATCAGCA-TTGAA-AGC-GG-T-A---ATTTTAAA-C-AT-AATGTT--GAG-CTGGA-AAT-TTC-TC-TG---------------------GCA-T-T-AATA---AG-AAT-A-ATGAAAAG-TA--TCAT--------A---TTT-AAATTGCA-CCCCTTTA-TG---AGAA-A-T--ACTAA---ACA-----ACAT--GAGT-TTCC-TT-CAAG--ATA--GGC---ATAAAG--A----AAAT--CAA---TATTTG-AT-GA--GG-TA-CT-CTTG---AG-CTC-CAAACTACCTC-ATTTC--------A-G-G-T-AA-AGT--GCG--TCCAGA--GAGA--TAACT-CTTACATTTTTTC-GGGATAACT--C-TTGCAT-ATTTATGGATCGATGCGCGatt
gi|23 : cact-TGT-C-TTGGTTCT-CG-GGAAACT-TG-A-TTTTT--GAA-AAA---G-GGTAGG-Tcag
gi|4 : AATGGAGGTA---TAG----T-TA-AGAGGTTTTT-ATATT-TC---TGTTT-TTTTAATTGTCC--A-AGAGAAGC---A-AGGGTACGGG-AT-TTAATTTT--T---G-TTT-TTAA-ATCA-------A--AAC-GA----AT--AAA-AC-TGA----A-AAA--ATTCAA-C-AT-ATT--TACG-AA----------TCAGGTATTTCA-AGG-GCA-TC-AA--CT-TG--TA-T---TGTAA---TGAC--TCAG-TA---A-TAAAA--TTGTTG----ACAT--AAA-TTA-ATGTTTGT---GG---A-TA----------------G-G-T-AAGG-GTGACCC-ACAA-ATA-TCA----A----T---ACTCT-AGCTGATT--CCCCACC-TAAAAGTGA---TAGAT--AAGAAAA--TATTGCT-TTCGA-CT--T-A-ATTATAATGT-TCA----ATA---T--T---TC-CACCC-A-----ATTAATAACAAGTATATAT-TCA-T-GT-ATTA--T--AAA----C--AAGTC--ATACAA-TTTAAAATTGT-ATT-CA--AAA---TC-T--ATGAAAA----CA-----A-T--AA-A-C-AT-T-G---A-----AC--------TGTCT-GAGACTGGA-ATA-TTCCTCCTGCTTT-ACAA-AAATCCATCT-GCAAT-T-AAAA---AA-A-TTG-ATGAA--G-TA-AACAT--------A---TTT-GAATTGCA-CCC-TTTA-TG---AGAA-A-T--ACAAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--ATA--GGC---ATA-----A----AAAA--AAACAATACT-G-AT-GA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------ACAAG-T-AA-AGT-AGCG--T-CAGA-GAAGA--TAACG-CTTACATTTTTTC-GGGATAAGT--C-TTGCAT-ATTTAT-GATCGATGCGTAGC
gi|5 : atGGTA--GGGAT-TTTATTTT--TT--G-TTT-TTAA-ATCA-------A--A-C-GA---TATCTAAA-ACCTGA----A---ATGATTCAA-C-AT-ATT--TACG-AAAT-TAA-TT----------TCA-AGG-GCA-TC-AA--CT-TG--TA-TGC-CACAGA--TGAC--TCAG-TA---AATAAA---CTGTTG----AC-T--AAAATAA-ATGTTTGTTG-GGTAGG-TACA--------------G---T-AAGG-GTGACCC-ACCA-A-T-TCA----A----T---ACTCT----TGATT--CCCCACC-TAAAAGTGA---TGAAT--AAGAA----TA-TCCT-TT-GA-CA--T-T-ATT-TATGGT-CTA----A-A---TA-T---TT-T-CCC-AA----TTA--TACG-AGT-----T-TCA-TTGT-ATTA--AT-AAA----CC-A-GTCCA-TA-AA-TTTAAA-TT-TTATTTCA-TAAAATCTC-TGA-TGAAA-----CAT-AACA-TTGAA-A-C-GG-TAA---A-----ACGC-ATAA-TG-TT-GAG-CTGGA-ATT-T--CTC-TTCTTT-A--A-AAATCC-TCT-GCA-T-T-AAAA---AA-A-T-A-ATGAAA-G-TA-ATCATATTTTCATA---TTT-AAATTG---TCC-CTTA-TG---AGAA-A-T--ACTAA-C-ACA------AATGCGA---TTCC-TT-CAAG--ATA--GGC---ATA-----A----AAATA-CAA---TACTTG-AT-GA--GGTTA-CTACTTG---AG-CTCACAAACTA-CTC-AT-TC--------A-----C-G--AGT-AGCG--T-CA-A-GGAGA--TAACT-CTTACATTTTTTC-GGGATAACT--C-TTGC-A-A--TAT-GATCGATGg
gi|7 : ccacataaaataaattgtcctggtttctcgggaaattgattttttgaaaaagtgggtaggtaTCAA-C-AT-ATT--TACGGAAATGT-----------CATTTCAAGGG----ATCCAA-ACTCTC-GTACTGCTCGCA-AGATGACTCTCAGTTAG--AATCATAAATTGTTG----AC-TACCAA-TAACATGTTT-TTGCGG---C-GATA--------------GTA-C-ATGG-CTGGACC-ACAA-A-A-TCACA--AT---A---ACTCT-C----ATTG-CC--ACC-TAAAAGTAAA--TGAATTTAAGAAAA--TTATCCTCTT-GA-CAGGTAT-ATT-TA-TGT-CTA----A-A---G--A---TTAT-CCC-AAT---TTA--TACG-AGTAT---T-TCA-TTGTCATTA--AT-AAATGTTC--A-GTC--ATA-AA-TTTAAA-TTGTT-TT-CA-TAAA---CA-TGA-TGAA------CAT-A-CA-TTGAACG-C-GGAT-T---A-----AC-C-AT-A-TGTTTTGAG-CTGGATAAT-TTCCTC-TGCTTTTA--A-AAATCC-TCT-GCA-TCT-AAAATATAC-A-T-ATATGAAA-GCTA-ATCAT--------A---TTC-TAATTGC---TC-TTTA-T----GGACCA-TTAACTAA-CCACA-----CAAT--GA-T-TTCCATTCCAAG---TA--G-C---ATA-----A----AAAAAACAAT--GACTG--AT-GA--GG-TA-CT-CTTG---AG-CCC-AAAACT--CTC-AAGTC--------C-GAGATAGA-AGT-AGCGGTT-CAGcagc
gi|9 : TTGTTG-GGGATA-TATAAATTCATT------G-G-TTAAGG-GTGACCC-ACAA-A---TCA----A----AT--ACTCT-----GATT---CCCACC-TAAA-GTGA---TGAAT--ACTAAAA--TA-TTCT-TT-GAACA--T-T-ATT-TA-TGT-CTA----A-A---T--A---TT-T-CCC-AATTTATTT--TACG-AGTAT---T--CA-TTGT-ATTT--AT-AAA----C--CTGAC--ATA-AA-TT-AAA-TTGGTATT---------------------AAA----CAT-AACA-TTGAC-A-C-AG-T-AT--A-----AC-C-AC-A-TGTT--GAG-CTGGA-ATT-T-CCTC-TGCTTT-A--AAAAATC--------A-T-A-ATAA---AG---T-A-TT---A-G-TA-ATCAT--------A---TTT-AA-TTGC--CCT-TTTA-TTG--AGAA-A----ACAAA-C-ACA-----CAAT--GA-T-TT-C-TTCCA---GATG--AGCT--ATA-----AAACTAAAA--CAAT--TACT-G-AT-GA--GG-TA-CT-CTTGTTTA--CTC-CAAACTT-ATC-A--TC--------
gi|8 : gAGG-GTGACCC-ACAA-A-A-TCA----A----AT--ACTC
gi|14 : G-ATAACTC-ACAC-A-A-TCA----A----A-------T-A-CTAATCC-TCCAACT----AAGTGAAAATGAAT--AAGAA----TA-TCCT-GT-GA-CA--T-T-ATT---ATGT-CGA----A-A---A--TA--TT-T-CCC-AAA---TTA--TA-GAAATAT---TATCAAT-GT-ATTT--AT-AAA----C--AAGT----TA-CA-TTTAAA-TTGTTcgattcgannnnnnnnnnnnnnnnnnnnnnnnntccacgcgatccccacctaaggtgatgaataagaaaatatacttcattatctatgttctaaaatattttccccaatatacgagtattcattgtgattaataaaccagtccataaatttaaattgttattcataaatctgattggaaattaaacattgaaacggtaaaccatatgttgagctggaatttctcctgcttcaaaaattttctgcattaaaaaaaataatgaaagtaatcaatattttaaattgcaccctttattgagagaaatctaacacaaacagcaatgagattccttcaagataagcataaaaaaaatcaatgatgtgatggtactcttgagctccaaactactcatcactcgtttaaagtagtagcgtcagaggagataactcttacattttttcagagataagtactttgcaataggatcgatgtgcgcggc
gi|8 : aaatgtgttttcttggataaacatttaaatcatttgtaaaaagcggaT-CCCCACC-TAAG-GTGA---TGAAT--AAGAAAA--TA-TACT-T-----CA--T-T-ATC-TA-TGTTCTA----A-AATAT--T---TT-C-CCC-A-----ATA--TACG-AGTAT---T--CA-TTGTGATTA--AT-AAA----CC-A-GTCCA-TA-AA-TTTAAA-TTGTTATT-CA-TAAA---TC-TGATTGGAAA----TTA-AACA-TTGAA-A-C-GG-T-A---A-----AC-C-AT-A-TG-TT-GAG-CTGGA-A-T-TTCTCC-TGCTTC-A--A-AAATTT-TCT-GCA-T-TAAAAA---AA-A-T-A-ATGAAA-G-TA-ATCA---------ATATTTT-AAATTGCA-CCC-TTTA-TTGAGAGAA-A-T---CTAA-C-ACAAACAGCAAT--GA-GATTCC-TT-CAAG--ATA--AGC---ATA-----A----AAA---AAAT--CAATGATGT-GAT-GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TCACTCGTTTA-AAG-T----AGT-AGCG--T-CAGA-GGAGA--TAACT-CTTACATTTTTTCAGAGATAAGTA-CTTTGC-A-A--TAG-GATCGATGTGCG
gi|11 : agggtgacccacaaaatcaaatactccgattcgannnnnnnnnnnnnnnnnnnnnnnnntccacgcgaA----CAT-AA-A-TTGCA-A-C-GG-T-A---A-----AC-CCAT-A-T---T-GAGGCTGGA-ATT----CTC-TGCTT---------AT---------A-T-A-AAAA---AA-A-T-A-ATGAAA-G-TACATCA---------T---ATT-AAAATGCA-CC---TTA-TG---AGAA-ACT--ACTAA-C--C------CAAT--GA-T-TTC---TCC----AATA--GGC---ATA-----AAC--AAAT--AAAT--CAATCG--T-GA--GGATA--T-CTT----AT-C-C-CAAACTA-CTC-A--TC--------ACGAT-T-AA-AGT-AGCG--T-CA-A-GGAGCA-TA--T-CTTACATTTTTCG-AGAATAAC-----TTGCAT-T--CAT-GATCGATG-GCGcggc
gi|13 : ttgtgac-T--ACTAAGC-AC------CAAT--AT-T-TTCC-TTC--AG-TATA--G-C---ATT-----G----TAAC---AAC--TAT----ATTGA--GT-TATCT-CT-G---AG-CTC-CAA--TG-CTC-A--TC--------ACGAG-T-GACAGTGAGC---T-CAGAGGGAGA--TATCT-TTTATATTCTTTC-GGG-TAACTGATATT--------TAT-GATCGA--TGCGGCccgcg
gi|12 : tctgtcatattattaaggattaaggtgagaagtcaatcattttctcgtaatcgtgcacctttatgaggagtatttgtgccagtaatt-T--ACTAAGC-AC------CAAT--AT-T-TTCC-TTC--AG-TATA--G-C---ATT-----G----TAAC---AAC--TAT----ATTGA--GT-TATCT-CT-G---AG-CTC-CAA--TG-CTC-A--TC--------ACGAG-T-GACAGTGAGC---T-CAGAGGGAGA--TATCT-TTTATATTCTTTC-GGG-TAACTGATATT--------TAT-GATCGA--TGCGGCag
gi|17 : tctgtcatattattaaggattaaggtgagaagtcaatcattttctcgtaatcgtgcacctttatgaggagtatttgtgccagtaattG-AT-GA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTCGA--TC--------A-TCA-C-G--AGT-AGCG--T-CTGA-ag
gi|3 : -AT-GA--GG-TA-GT-TTGG---AG-CTC-AAGAGTACCTC-A--TC--------A-AAttatgttgtgtggatgaaagttcggttttaagtcttaaatt
gi|20 : cactaaataattgtctggttctcgggaaaatatgaattttgaaaaagtgggtaggtaggataagggtttttattttttgtttttatttcccccaaagagcagggtagggattttaatttttgtttttaaatcaatgacgataatacagatcacatatcaaccatgattacaaaatgtaatttcaaggataaacttgtatgtgtaaatgactagatacaaaataaaaattggtggactatgaaataaatgtttgttgagatatataattacattcattggtaagggtgacccacaacatcaatttaaatactgcctgattccccacctaagtgatgaataagaaaatactcctttgacattcatttattgtctaaatgattttcccaattatacgagtatttcattgtattaataaaccaggtccataaatttaaaattgttattcataaatcgtgatgaccatcatcagcattgaaagcggtaattttaaacataatgttgagctggaaatttctctggcattaataagaataatgaaaagtatcatatttaaattgcacccctttatgagaaatactaaacaacatgagtttccttcaagataggcataaagaaaatcaata-AGCG--T--AGA-GGAGA--CAACTGCTTACATTTTTTC--GGAT-ACT--C-TTGCAA-ttcaggtaaagtgcgtccagagagataactcttacattttttcgggataactcttgcatatttatggatcgatgcgcgcag
gi|19 : cA-GGAGA--TAACT-CTTACATTTTTTC-GGGATA---------------------GATCGATGCGTGGCttgattatagcgcgtc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): TTTTTGTGAATGTTGTTTTTTCCCAATTTTCCTAAAACAACGGTGATTTTCCCAATTT
Alignments
lowQualScore : 11111 1 1 2222222 2222222 3333333333333333 1 11111 11 1 111 111111 1111 222 7777777777777777777777777777777777777 33333333333333333 11 222 1 1 111 111111 111 1111 222 111111 11111 11 22222 11 1 1 22222222222222222 1 11111111 222222 44444444444444444 111111 11 1111111111 1111 111 111 11 2222222222222222222 2222
lowQualScore : 4 77 3 3 3 3 3 3 3 3 22222 3 3 55 3 1 3 5 3 8888 4 4 55 4 4 4 777 4 777 7777 5 0 5555555 4 66 66 8 4 4 66 5 5 5 66 5 5 1 0 5 5 0000000 4 4 66 4 1 6666666666666666 0 33333 5 11 66 0 5 999 9999 5 999 5 444444 6 22 5555 5 222 5 3 5 4 4 3333333333333333333333333333333333333 4 3 3 3 555 55 11111111111111111 88 4 00 555 55 55 4 2 55 4 4 777 55 4 8 2 4 8 4 8888 111 555555 4 4 4 4 4 111 4 4 2222 4 0 8 4 888888 666 4 4 4 4 1 88888 333333 4 66 33333 00 1 4 4 8 4 4 4 11111 999999 99 4 2 4 0 4 4 44444444444444444 4 444 555 88 0 3 99 3 6 3 777 22222222 3 3 000000 99 77 3 6 555 3 44 66666666666666666 888 111111 44 777 3 6 44 3 5555 999 9999999999 8888 444 333 3 44 77 6 6 3 555 3 3 3 6 44 3333333333333333333 6 44 3 7 3 55 0 3 3 666 55 1 3 8888 3 55 7
lowQualScore : . .. . . . . . . . . ..... . . .. . . . . . .... . . .. . . . ... . ... .... . . ....... . .. .. . . . .. . . . .. . . . . . . ....... . . .. . . ................ . ..... . .. .. . . ... .... . ... . ...... . .. .... . ... . . . . . ..................................... . . . . ... .. ................. .. . .. ... .. .. . . .. . . ... .. . . . . . . .... ... ...... . . . . . ... . . .... . . . . ...... ... . . . . . ..... ...... . .. ..... .. . . . . . . . ..... ...... .. . . . . . . ................. . ... ... .. . . .. . . . ... ........ . . ...... .. .. . . ... . .. ................. ... ...... .. ... . . .. . .... ... .......... .... ... ... . .. .. . . . ... . . . . .. ................... . .. . . . .. . . . ... .. . . .... . .. .
lowQualScore : 0 44 6 6 6 6 6 6 6 6 77777 6 6 00 6 4 6 0 6 5555 0 0 55 0 0 0 000 4 888 8888 0 0 4444444 4 11 11 9 4 4 99 0 0 0 99 0 0 4 1 0 0 1111111 4 4 11 4 1 6666666666666666 0 11111 0 22 99 0 0 999 0000 0 444 0 666666 2 22 6666 0 555 0 6 0 4 4 4444444444444444444444444444444444444 0 6 6 6 111 00 22222222222222222 66 0 55 999 55 55 0 0 55 0 0 000 55 0 0 0 0 0 0 5555 000 333333 0 0 0 0 0 000 0 0 8888 0 8 0 0 666666 000 0 0 0 0 9 11111 111111 4 11 44444 33 3 0 0 0 0 0 0 00000 111111 66 0 0 0 9 0 0 77777777777777777 0 222 888 22 0 3 22 3 7 3 111 11111111 3 3 000000 22 88 8 7 888 3 66 77777777777777777 333 666666 66 111 3 7 66 3 3333 222 3333333333 8888 555 222 1 22 33 2 2 1 444 1 1 1 2 66 8888888888888888888 7 66 3 3 6 00 2 6 6 444 00 4 6 2222 6 00 3
consensus : CCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC-----A-GGGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GATA-T--A-AA-ACCTG-A-A-TA---ATTCAA-C-ATATT--TACG-AAATGTAA----T----T-ATTTCA-AGG-GCAATC-AA-ACTT--G-TA-TGC-CGTAG-A--TGAC-TC--AG-T--A---AATAAAAAATTGTTG----AC-TA---AA-TAA-ATGTTTGTT-G-GG---ATATA-----------A------T-------A--GG-TAAGG-GTGACCC-ACAA-A-A-TCA--A----A---ACTCTN-C-TGATT--CCCCACC-TAAAAGTGAA--TGAAT--AAGAAAA--T-A-T--CCT-TTGA-C---A--T-T-ATTTA-T-G-TCT-A----A---AT--T---TT-T-CCC-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TGA-T--GAAAA----CAT-AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATGT-TT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-ATA-TTT-A----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----AAA-A--CAAC--TA-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGAGG-AG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-ATA--TAT-GATCGA--T-GCGCGGC
Reference ( family-835 ) : CCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC-----A-GGGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GATA-T--A-AA-ACCTG-A-A-TA---ATTCAA-C-ATATT--TACG-AAATGTAA----T----T-ATTTCA-AGG-GCAATC-AA-ACTT--G-TA-TGC-CGTAA-A--TGAC-TC--AG-T--A---AATAAAAAATTGTTG----AC-TA---AA-TAA-ATGTTTGTT-G-GG---ATATA-----------A------T-------A--GG-TAAGG-GTGACCC-ACAA-A-A-TCA--A----A---ACTCTN-C-TGATT--CCCCACC-TAAAAGTGAA--TGAAT--AAGAAAA--T-A-T--CCT-TTGA-C---A--T-T-ATTTA-T-G-TCT-A----A---AT--T---TT-T-CCC-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CA-GTCCAATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TGA-T--GAAAA----CAT-AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATGT-TT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-ATA-TTT-A----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----AAA-N--CAAC--TA-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGAGG-AG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-ANA--TAT-GATCGA--T-GCGCGGC
gi|1 : ACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC-----AAGGGTA-GGGATTTTAATTT--TT--G-TTT-TTAA-ATCAA--A-C-GATA-T--A-AA-ACCTG-A-AATA---ATTCAA-C-ATGAT--TACA-AAATGTAA----T----T----TCA-AGG-GCA-TC-A---CTT--G-TA-TGT--GTAA-A--TGAC-T---AG-T--A---AA-ATAAAATTGGTGG---AC-TATG-AA-TAA-ATGTTTGTTTG-AGT--ATATA-----------A------TTACCTTCATTGG-TAAGGCGTGACCCTACAACA-A-TCA--ATTTAA---ATACTG-C-TGATT--CCCCACC-TAAAAGTGA---TGAAT--AAGAAAAACT-ACT--CCT-TTGA-C---A--T-TCATTTAAT-G-TCT-A----A---AT--TATCTT-T-CCC-AA-TT-A---TA-CG-ACTAT---T-TCATTGT-ATTAATAAAAC---CAGGTCC-ATA-AATTTT-AAA-TTGTTATT-CATTAAA---TCGTGA-T--GAAAACCATCAC-AGCA-TTGAA-AGC-GG-T-ATTT--AAA-C-AT-A-GTGTT-GAGCCTGGA-A-T-TTCCTC-----------------------GCA-T-T-AATA---AGAAT-A-A--TG-A-AAA-T-C-A--------TC-ATA-TTT-A----AAT--TGCACCCCTTTA-T---GAGAAA-T--A-----------------CTAA---ACA-----ACAT--GAGT-TTCC-TT-CAAGCAA-TAACGGCGTGATACCAAGA----AAATA--CAA---TA-T-T-GA--TGAGGGG-TA-CT-CTTG---AGCCTC-CAAACTA-CTC-AT-TC--------A-GAG-T-AA-AGT-AGCG--T-CAGA-G-AG-A--TAACT-CTTACA-TTTTTC-GGGATA---ACTC-TTGCGATATTTAT-GATCGA--T--CGCCGC
gi|10 : CCACATAAAA-TAA-AT-TGT-C-T-GGTCT-CT-CG-GGGAA---A-TG-A-TT-----GA-AAAGT-G-GGTAGG-TAGTCAAG--A-GG--GTTTAT-TT-TT-TT---TGTTTCTT---ATTT-CT--G-A-AGA-GC-----G-AGGTA-GGAGATTTATTTTGGTT--G-TTT-TAAA-ATCAA--A-CGGATA-T--A-AT-ACCTG-A-A-TAT--GTTCAA-C-ATATT--TACG-AAA-GTAA----T-------CTTCA-AGG-GCAATC-GACACTT--G-TA-TATGCACAG-A--TGA--TC--AG-T--A---AAT-AAAAACTGTTG----AC-TA---AA-ATA-ATGTTTTTT-G-GG---AT-T------------G------C-------A--AG-TA--G-GTGACCC-ACAA-G-ATTCG--A----A---Agc
gi|11 : gA----CAT-AA-A-TTGCA-A-C-GG-T-A-----AAC-CCAT-AT----T-GAGGCTGGA-ATT----CTC-TGCTT--------AT---------A-T-A-AAAA---AA-AT-A-A--TG-A-AAG-T-ACA--------TC-ATA--TT-A----AAA--TGCA-CC--TTA-T---GAGAAACT--A-----------------CTAA-C--C------CAAT--GA-T-TTC---TCCA----A-TA--GGC---ATA-----AAC--AAA-T--AAAT--CA-A-T-CG--TGA--GGATA--T-CTT----AT-C-C-CAAACTA-CTC-A--TC--------ACGAT-T-AA-AGT-AGCG--T-CA-AGG-AGCA--TA--T-CTTACATTTTTCG-AGAATA---A--C-TTGC-ATT--CAT-GATCGA--TGGCGCCGC
gi|12 : ttgtgacAA---GG-ATTA-AGGTG-AGAAG-TCA-A--------TC-AT--TTT-CTCGTAATCGTGCA-CC-TTTA-T---GAGGAG-T--ATTTGTGCCAGTAATTTACTAAGC-AC------CAAT--AT-T-TTCC-TTC--AGT-A-TA--G-C---ATT-----G----TAA----CAAC--TA---T-AT--TGA--GT-TATCT-CT-G---AG-CTC-CAA--TG-CTC-A--TC--------ACGAG-T-GACAGTGAGC---T-CAGAGGGAG-A--TATCT-TTTATATTCTTTC-GGG-TA---ACTG-AT---ATT--TAT-GATCGA--T-GCGg
gi|13 : tctgtcatattattAA---GG-ATTA-AGGTG-AGAAG-TCA-A--------TC-AT--TTT-CTCGTAATCGTGCA-CC-TTTA-T---GAGGAG-T--ATTTGTGCCAGTAATTTACTAAGC-AC------CAAT--AT-T-TTCC-TTC--AGT-A-TA--G-C---ATT-----G----TAA----CAAC--TA---T-AT--TGA--GT-TATCT-CT-G---AG-CTC-CAA--TG-CTC-A--TC--------ACGAG-T-GACAGTGAGC---T-CAGAGGGAG-A--TATCT-TTTATATTCTTTC-GGG-TA---ACTG-AT---ATT--TAT-GATCGA--T-GCGgcag
gi|14 : tctgtcatattattTGTA-----------A------A-------A--AG-CGGAG-ATAACTC-ACAC-A-A-TCA--A----A-------TA-C-TAATC--CTCCAAC-TAA--GTGAAAATGAAT--AAG--AA--T-A-T--CCT-GTGA-C---A--T-T-A-TTA-T-G-TCGAA----A---AT--A---TT-T-CCCAAA-TT-A---TA-GA-AATAT---TATCAATGT-ATTTAT-AAAC---AA-GT----TA-CA-TTT-AAA-TTGTTgcag
gi|15 : aaatgtgttttcttggataaacatttaaatcattATAAAA--AA-ATATGT-C-T-G-T-T-CT-CG-GAAA-------G-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GTTGTTAAT-TT-TT---TG-TT-TT---ATTTC------A-AGA-GG-----A-GGGT--GGGATTTTATTTT--TTTGG-TTT-TTAA---TAA--A-C-GATA-T--A-AA-AACTGAA-A-TG---ATTCAA-----ATT--TACG--AATGTGA----T----T-
gi|16 : ggcaCCACATAAAAATAATAT-TGTTC-T-TGG-T-CT-CGTGGCAA---TGTGCA-TTTT--GAA-AA-GTGG---TAGGATTG----G-TA-GT--GGTTTT-AT-TT-TTGATTATTT-AT---ATATCCC--ATA-AGAAGCG----A-GGGTA-GGG-TTTTATTTT--TT--GATTTATTAA-tcaggac
gi|17 : g-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTCGA--TC--------A-TCA-C-G--AGT-AGCG--T-CTGAcaccatagtcataactattgtataaaaacct
gi|18 : TAAAA-TAA-AT-TAT-C-T-GGT-T-CT-CA-GAAA-----------TTTT--GAA-AAAGTGT-G-TAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---ttatgttgtgtggatgaaagttcggttttaagtcttaaatt
gi|19 : ccAGG-AG-A--TAACT-CTTACATTTTTTC-GGGATA----------------------GATCGA--T-GCGTGGCatt
gi|2 : tccgatatagtgaatgtCCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CTTCG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GCCTAATA-GGGTA-GG-ATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GATA-T--A-AATACCTG-A-A-TAGGGATTCAA-C-ATATACATACG-AAATGTAAATTGTGACGT-ATGTCATGGG-GCAATC-AA-ACTT--GGTA-TGC-CGTAG-AGGTGACGTC--AGGT--A---AATAGAAGATTGTTGTTTTAC-TC---AA-TAA-ATGTTTGTT-G-GG---ATATA-----------------------------GG-TAAGG-GTGACCC-ACAA-A-A-TCA--A----A---ACTCTC-C-TGATTT-CCCCACCGTAAAAGTGAA--TGAAT--AAGAAAA--T-AAT--CCT-TTGA-C---A--T-T-ATTTAAT-G-TCT-A----A---AT--T---TT-T-CCC-A--TT-C---TA-CGCAGTAT---T-TCAT-GT-ATTAA--AAAC----A-GTCCAATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TGAAT--GAAAA----CAT-AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATGT-TT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-A-A-TTT-A----AAT--TGCA-CCCTTTA-T----AGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAGA-A-TA--GGC---ATA-----A----AAA-C--CAAC--TA-C-TGGA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGAGG-AG-AATTAACT-CTTAAATTTTTTC-GGGATA---ACTCTTTGC-AAA--TAT-GATCGA--T-GTGCGGCgg
gi|20 : -AGCG--T--AGAGG-AG-A--CAACTGCTTACATTTTTTC--GGAT----ACTC-TTGC-A-A--T-T-GATT-A--TAGCGCG
gi|22 : cCCACCTAAAA-TAA-TT-TCT-C-T-GGT-T-CT-TG-GACAA---C-TG-A-TTTT--GAA-tc
gi|23 : g-TGT-C-TTGGT-T-CT-CG-GGAAAC--T-TG-ATTTTT--GAA-AAA---G-GGTAGG-T
gi|3 : AAA-TAA--T-TGT-C-T-GGT-T-CT-CG-GGAAAATAT-GA-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----GATAAGG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCCCCA-A-AGA-GC-----A-GGGTA-GGGATTTTAATTT--TT--G-TTT-TTAA-ATCAATGA-C-GATAAT--ACAG-ATC---ACA-TA-----TCAA-CCATGAT--TACA-AAATGTAA----T----T----TCA-AGG----AT--AA-ACTT--G-TA-TGT--GTAA-A--TGAC-TA--GA-T--ACAAAATAAAAATTGGTGG----AC-TATGAAA-TAA-ATGTTTGTT-G-AG---ATATATAATTACATTCA------T-------T--GG-TAAGG-GTGACCC-ACAA-C-A-TCA--ATTTAA---ATACTG-CCTGATT--CCCCACC-TAA--GTGA---TGAAT--AAGAAAA--T-ACT--CCT-TTGA-C---A--T-TCATTTA-TTG-TCT-A----A---ATGAT---TT-T-CCC-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CAGGTCC-ATA-AA-TTTAAAA-TTGTTATT-CA-TAAA---TCGTGA-T--GACCAT---CATCAGCA-TTGAA-AGC-GG-T-AATTTTAAA-C-ATAATG--TT-GAG-CTGGA-AAT-TT-CTC-TG--------------------GCA-T-T-AATA---AGAAT-A-A--TGAA-AAG-T---A--------TC-ATA-TTT-A----AAT--TGCACCCCTTTA-T---GAGAAA-T--A-----------------CTAA---ACA-----ACAT--GAGT-TTCC-TT-CAAG--A-TA--GGC---ATAAAG--A----AAA-T--CAA---TATT-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTACCTC-ATTTC--------A-G-G-T-AA-AGT--GCG--TCCAGA-G-AG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-ATATTTATGGATCGA--T-GCGCG
gi|4 : cactAATGGAGGTA---TAG----T-TA-AGAGGTTTTT-ATATT-TC---TGTTT-TTTTAATTGTCC--A-AGAGAAGC-----AAGGGTACGGGATTTAATTTT--T---G-TTT-TTAA-ATCAA--AAC-GA-A-T--A-AA-ACTGA-A-A-AA---ATTCAA-C-ATATT--TACG-AA-T-CAG----G----T-ATTTCA-AGG-GCA-TC-AA--CTT--G-TA-T---TGTAA----TGAC-TC--AG-T--A---A-TAAAA--TTGTTG----ACATA---AA-TTA-ATGTTTGT----GG---ATA-------------------------------GG-TAAGG-GTGACCC-ACAA-ATA-TCA--A----T---ACTCTAGC-TGATT--CCCCACC-TAAAAGTGA---TAGAT--AAGAAAA--T-A-TTGCTT-TCGA-CTTAA--T-T-ATA-A-T-G-TTC-A----AT--AT--T---TC-CACCC-AA-TT-AA--TAACA-AGTATATAT-TCAT-GT-ATTA-T-AAAC---AA-GTC--ATACAA-TTT-AAAATTGT-ATT-CA--AAA---TC-T-A-T--GAAAA----CA-----A-T--AA-A-C-AT-T-G-----AAC-------TGT-CT-GAGACTGGA-ATA-TTCCTCCTGCTTT-ACAAAAATCCATCT-GCAAT-T-AAAA---AA-ATTG-A--TG-A-A-G-T-A-A--------AC-ATA-TTT-G----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CAAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----AAA-A--AAACAATA-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------ACAAG-T-AA-AGT-AGCG--T-CAGAGA-AG-A--TAACG-CTTACATTTTTTC-GGGATA---AGTC-TTGC-ATATTTAT-GATCGA--T-GCGTAGCcag
gi|5 : atCCACATAAAA-TAA-AT-TGT-CCT-GGT-TTCT-CG-GGAAA---T-TG-A-TTTTTTGAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GATTTT-AT-TT-TT---TGTTT-TT---Ag
gi|5 : GGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GATA-TCTA-AA-ACCTG-A-AATG---ATTCAA-C-ATATT--TACG-AAAT-TAA----T----T----TCA-AGG-GCA-TC-AA--CTT--G-TA-TGC-CACAG-A--TGAC-TC--AG-T--A---AATAAA---CTGTTG----AC-TA---AAATAA-ATGTTTGTT-G-GG----TA-G-----------G------T-------AC-AG-TAAGG-GTGACCC-ACCA-A-T-TCA--A----T---ACTCT----TGATT--CCCCACC-TAAAAGTGA---TGAAT--AAGAA----T-A-T--CCT-TTGA-C---A--T-T-ATTTA-T-GGTCT-A----A---ATA-T---TT-T-CCC-AA-TT-A---TA-CG-AGT-----T-TCATTGT-ATTAAT-AAAC---CA-GTCCA-TA-AA-TTT-AAA-TT-TTATTTCA-TAAAATCTC-TGA-T--GAAA-----CAT-AACA-TTGAA-A-C-GG-TAA-----AACGC-ATAATG--TT-GAG-CTGGA-ATT-T--CTC-TTCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AA-AT-A-A--TG-A-AAG-T-A-ATCATATTTTC-ATA-TTT-A----AAT--TG---TCCCTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA------AATGCGA---TTCC-TT-CAAG--A-TA--GGC---ATA-----A----AAATA--CAA---TA-CTT-GA--TGA--GGTTA-CTACTTG---AG-CTCACAAACTA-CTC-AT-TC--------A-----C-G--AGT-AGCG--T-CA-AGG-AG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-A-A--TAT-GATCGA--T-GCaatcaaacgatatctaaaacctgaaatgattcaacatatttacgaaattaatttcaagggcatcaacttgtatgccacagatgactcagtaaataaactgttgactaaaataaatgtttgttgggtaggtacagtaagggtgacccaccaattcaatactcttgattccccacctaaaagtgatgaataagaatatcctttgacattatttatggtctaaatattttcccaattatacgagtttcattgtattaataaaccagtccataaatttaaattttatttcataaaatctctgatgaaacataacattgaaacggtaaaacgcataatgttgagctggaatttctcttctttaaaaatcctctgcattaaaaaaataatgaaagtaatcatattttcatatttaaattgtcccttatgagaaatactaacacaaatgcgattccttcaagataggcataaaaatacaatacttgatgaggttactacttgagctcacaaactactcattcacgagtagcgtcaaggagataactcttacattttttcgggataactcttgcaatatgatcgatgcagc
gi|6 : ccacataaaataaattgtcctggtttctcgggaaattgattttttgaaaaagtgggtaggtaCCACATAAAA-TAA--T-TGT-C-T-GGT-T-CT--G-GGAAA---T-TG-A-TTTT--GAAGAAAGT-G-GGTAGG-TAG----G-TA-GT--GGTTTT-AT-TTCTT---TGTTT-TT---ATTTCCC--A-A-AGA-GCG----A-GGGTA-GGGA-TTTATTTT--TT--GTTTT-TTAATATC----A-C-GATA-T--A-AA-A--TG-A-A-AT---GTTCAATC-ATATT--TACG-GAATGT------T----TAATTTCAGAGGTGC-ATC-GA-AGTT--GCTA-TG--CGTAG-A--TGAC-TG--AG-T-------AT--AAAATTGTTG----AC-TA---AA-T-A-ATGTTTGTT-G-GG-------------------A------T-------A--GGTTAAGG-G-GACCC-AC-A-A-A-TCA--A----GATTACTATT-C-CGATCGATCCCACC-TAAATGTG-A--TG-AT--AAGAAAA--T-A-T--ACT-TTGA-C---A--T-T-ATCTATT-C-CCT-AAAATA---AT--T---TT-C-CCC-AA-TT-A---TA-CG-AGTAA---T-TCATTGT-ATTTAT-TAAC---CA-GTCCA--A-AA-TTT-AAA-TTGTT-TT------AA---T--TGA-T--G-AAA----CATAAACAGTTGAA-A-CGGG-T-A-----AAC------ATGA-TT-TAG-CTTGG-ATTATCCCTC-TGCTTTAA--AAAATTT-TCTGGCA-T-T-AAAA---A--AT-A-A--TG-A-AAG-T-A-A--------TA-A-A-TTTAA----AAT--TGCA-CCCTTTAGT---GA-AAA-T--A-----------------CT-A-C-A-A-----CAA---GA-T-TTCC-TTCCAAG--AGTA---AC---ATA-----A----AGA-A--CAGA--TA-T-G-GA--TGG--CG-TA-AT-CTTG---AG-CTC-CAAACTA-CTCAA--TC--------A-agc
gi|7 : TCAA-C-ATATT--TACGGAAATGT-----------C-ATTTCA-AGG-G--ATCCAA-ACTCTCG-TACTGCTCGCAAGA--TGAC-TCTCAG-TTAG---AATCATAAATTGTTG----AC-TACC-AA-TAACATGTTT-TT-GCGG---CGATA-----------G------T-------A--CA-T--GG-CTGGACC-ACAA-A-A-TCACAAT---A---ACTCTC-----ATT--GCC-ACC-TAAAAGTAAA--TGAATTTAAGAAAA--TTA-T--CCTCTTGA-C---AGGTAT-ATTTA-T-G-TCT-A----A---AG--A---TTAT-CCC-AA-TTTA---TA-CG-AGTAT---T-TCATTGTCATTAAT-AAATGTTCA-GTC--ATA-AA-TTT-AAA-TTGTT-TT-CA-TAAA---CA-TGA-T--GAA------CAT-A-CA-TTGAACG-C-GGAT-T-----AAC-C-AT-ATGT-TTTGAG-CTGGATAAT-TTCCTC-TGCTTTTA--AAAATCC-TCT-GCA-TCT-AAAATATAC-AT-ATA--TG-A-AAGCT-A-A--------TC-ATA-TTC-T----AAT--TGC---TCTTTA-T---GGACCA-TTAA-----------------CTAA-CCACA-----CAAT--GA-T-TTCCATTCCAAG----TA--G-C---ATA-----A----AAA-AAACAAT--GA-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CCC-AAAACT--CTC-AAGTC--------C-GAGATAGA-AGT-AGCGGTT-CAGc
gi|8 : AGG-GTGACCC-ACAA-A-A-TCA--A----AT--ACT----C-CGATT--C
gi|8 : T--CCCCACC-TAAG-GTGA---TGAAT--AAGAAAA--T-A-T--ACT-T----C---A--T-T-ATCTA-T-GTTCT-A----AAATAT--T---TT-C-CCC-AA--T-A---TA-CG-AGTA----T-TCATTGTGATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TGA-TTGGAAAT----TA--AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATG--TT-GAG-CTGGA-A-T-TTCTCC-TGCTTC-A--AAAATTT-TCT-GCA-T-TAAAAA---AA-AT-A-A--TG-A-AAG-T-A-A--------TCAATATTTT-A----AAT--TGCA-CCCTTTA-TTGAGAGAAA-T--------------------CTAA-C-ACAAACAGCAAT--GA-GATTCC-TT-CAAG--A-TA--AGC---ATA-----A----AAA-A---AAT--CA-A-T-GATGTGAT-GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TCACTCGTTTA-AAG-T----AGT-AGCG--T-CAGAGG-AG-A--TAACT-CTTACATTTTTTCAGAGATAAGTACT--TTGC-A-A--TAG-GATCGATGT-GCGCGGCgannnnnnnnnnnnnnnnnnnnnnnnntccacgcgatccccacctaaggtgatgaataagaaaatatacttcattatctatgttctaaaatattttccccaatatacgagtattcattgtgattaataaaccagtccataaatttaaattgttattcataaatctgattggaaattaaacattgaaacggtaaaccatatgttgagctggaatttctcctgcttcaaaaattttctgcattaaaaaaaataatgaaagtaatcaatattttaaattgcaccctttattgagagaaatctaacacaaacagcaatgagattccttcaagataagcataaaaaaaatcaatgatgtgatggtactcttgagctccaaactactcatcactcgtttaaagtagtagcgtcagaggagataactcttacattttttcagagataagtactttgcaataggatcgatgtgcgcggc
gi|9 : agggtgacccacaaaatcaaatactccgattcgannnnnnnnnnnnnnnnnnnnnnnnntccacgcgaTTGTT-G-GGGATATATA-----------AATTCATT-------G--GT-TAAGG-GTGACCC-ACAA-A---TCA--A----AT--ACTCT-----GATT--CCC-ACC-TAAA-GTGA---TGAAT--ACTAAAA--T-A-T--TCT-TTGAAC---A--T-T-ATTTA-T-G-TCT-A----A---AT--A---TT-T-CCC-AATTT-ATTTTA-CG-AGTA----T-TCATTGT-ATTTAT-AAAC---CT-GAC--ATA-AA--TT-AAA-TTGGTATT-----------------------AAA----CAT-AACA-TTGAC-A-C-AG-T-AT----AAC-C-AC-ATG--TT-GAG-CTGGA-A-T-TTCCTC-TGCTTTAA--AAAAT--------CA-T-A-ATAA---AG--T-A-T--T-----AG-T-A-A--------TC-ATA-TTT------AAT--TGC--CCTTTTATT---GAGAAA----A-----------------CAAA-C-ACA-----CAAT--GA-T-TT-C-TTCC-AG--A-TG--AGCT--ATA-----AAACTAAA-A--CAAT--TA-C-T-GA--TGA--GG-TA-CT-CTTGTTTA--CTC-CAAACTT-ATC-A--TC--------
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTTTGTGAATGTTGTTTTTTCCCAATTTTCCTAAAACAACGGTGATTTTCCCAATTT
Alignments
lowQualScore : 11111 1 1 2222222 2222222 33333333333333 1 11111 11 1 111 111 1111 111111 7777777777777777777777777777777777777 222222222222222222222 2222 1 1 111 111111 111 1111 111111 11111 11 22222 11 1 1 22222222222222222 1 11111111 222222 44444444444444444 111111 11 11111 111111111 11 2222222222222222222 2222
lowQualScore : 4 77 3 3 3 3 3 3 3 3 22222 3 3 55 3 1 3 5 3 8888 4 4 55 4 4 4 777 4 777 7777 5 0 5555555 4 66 66 8 4 4 66 5 5 5 66 5 5 1 0 5 0000000 8 66 4 1 66666666666666 0 33333 5 11 66 0 5 999 55 66 5 999 5 555 6 22 5555 5 666666 5 3 5 4 4 3333333333333333333333333333333333333 4 3 3 3 555 777777777777777777777 88 4 5 1111 55 55 4 2 55 4 4 777 55 4 8 4 2 8 4 8888 111 555555 4 4 4 4 4 111 4 4 2222 4 8 4 777 8 66 4 4 4 4 1 88888 333333 4 66 33333 00 1 4 4 8 4 4 4 11111 999999 99 4 2 4 0 4 4 44444444444444444 4 444 555 88 0 3 99 3 6 3 777 22222222 3 3 000000 99 77 3 6 555 3 44 66666666666666666 888 111111 44 777 3 6 44 3 5555 999 8888888888 3 88888 777777777 3 44 77 6 6 3 555 3 3 3 6 44 3333333333333333333 6 44 3 6 3 55 0 3 3 666 55 1 3 4444 3 55 7
lowQualScore : . .. . . . . . . . . ..... . . .. . . . . . .... . . .. . . . ... . ... .... . . ....... . .. .. . . . .. . . . .. . . . . . ....... . .. . . .............. . ..... . .. .. . . ... .. .. . ... . ... . .. .... . ...... . . . . . ..................................... . . . . ... ..................... .. . . .... .. .. . . .. . . ... .. . . . . . . .... ... ...... . . . . . ... . . .... . . . ... . .. . . . . . ..... ...... . .. ..... .. . . . . . . . ..... ...... .. . . . . . . ................. . ... ... .. . . .. . . . ... ........ . . ...... .. .. . . ... . .. ................. ... ...... .. ... . . .. . .... ... .......... . ..... ......... . .. .. . . . ... . . . . .. ................... . .. . . . .. . . . ... .. . . .... . .. .
lowQualScore : 0 44 6 6 6 6 6 6 6 6 77777 6 6 00 6 4 6 0 6 5555 0 0 55 0 0 0 000 4 888 8888 0 0 4444444 4 11 11 9 4 4 99 0 0 0 99 0 0 4 1 0 1111111 9 11 4 1 44444444444444 0 11111 0 22 99 0 0 999 22 99 0 444 0 666 2 22 6666 0 555555 0 6 0 4 4 4444444444444444444444444444444444444 0 6 6 6 111 222222222222222222222 66 0 8 8888 55 55 0 0 55 0 0 000 55 0 0 0 0 0 0 5555 000 333333 0 0 0 0 0 000 0 0 8888 0 0 0 000 0 55 0 0 0 0 9 11111 111111 4 11 44444 33 3 0 0 0 0 0 0 00000 111111 66 0 0 0 9 0 0 77777777777777777 0 222 888 22 0 3 22 3 7 3 111 11111111 3 3 000000 22 88 8 7 888 3 66 77777777777777777 333 666666 66 111 3 7 66 3 3333 222 9999999999 3 22222 000000000 1 22 33 2 2 1 444 1 1 1 2 66 8888888888888888888 7 66 3 7 6 00 2 6 6 444 00 4 6 2222 6 00 3
consensus : CCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC-----A-GGGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-AT--A-AA-ACCTG-AA-TA---ATTCAA-CATATT--TACG-AAATGTAA----T----T-ATTTCA-AGG-GCAATC-AA-ACTT--G-TA-TGC-CGTA-GA--TGAC-TC--AG-T---AAATAAAAAATTGTTG----AC-T---A--AA-TAA-ATGTTTGTT-G-GG---ATATA-----------A------T-------A--GG-TAAGG-GTGACCC-ACAA-A-A-TCA----A----A---ACTCT-N-CTGATT--CCCCACC-TAAAAGTGAA--TGAAT--AAGAAAA--T-A-T--CCT-TTGA-C---A--T-T-ATTT-A-TG-TCT-A----A---AT--T---TT-T-CCC-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TG-AT--GAAAA----CAT-AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATGT-TT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-ATA-TTT-A----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----A-AA-A---CAAC--T-A-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGA-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-ATA--TAT-GATCGA--T-GCGCGGC
Reference ( family-835 ) : CCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC-----A-GGGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-AT--A-AA-ACCTG-AA-TA---ATTCAA-CATATT--TACG-AAATGTAA----T----T-ATTTCA-AGG-GCAATC-AA-ACTT--G-TA-TGC-CGTA-GA--TGAC-TC--AG-T---AAATAAAAAATTGTTG----AC-T---A--AA-TAA-ATGTTTGTT-G-GG---ATATA-----------A------T-------A--GG-TAAGG-GTGACCC-ACAA-A-A-TCA----A----A---ACTCT-N-CTGATT--CCCCACC-TAAAAGTGAA--TGAAT--AAGAAAA--T-A-T--CCT-TTGA-C---A--T-T-ATTT-A-TG-TCT-A----A---AT--T---TT-T-CCC-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TG-AT--GAAAA----CAT-AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATGT-TT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-ATA-TTT-A----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----A-AA-A---CAAC--T-A-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGA-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-ATA--TAT-GATCGA--T-GCGCGGC
gi|1 : ACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC-----AAGGGTA-GGGATTTTAATTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-AT--A-AA-ACCTG-AAATA---ATTCAA-CATGAT--TACA-AAATGTAA----T----T----TCA-AGG-GCA-TC-A---CTT--G-TA-TGT--GTA-AA--TGAC-T---AG-T---AAA-ATAAAATTGGTGG---AC-T---ATGAA-TAA-ATGTTTGTTTG-AGT--ATATA-----------A------TTACCTTCATTGG-TAAGGCGTGACCCTACAACA-A-TCA----ATTTAA---ATACT-G-CTGATT--CCCCACC-TAAAAGTGA---TGAAT--AAGAAAAACT-ACT--CCT-TTGA-C---A--T-TCATTT-AATG-TCT-A----A---AT--TATCTT-T-CCC-AA-TT-A---TA-CG-ACTAT---T-TCATTGT-ATTAATAAAAC---CAGGTCC-ATA-AATTTT-AAA-TTGTTATT-CATTAAA---TCGTG-AT--GAAAACCATCAC-AGCA-TTGAA-AGC-GG-T-ATTT--AAA-C-AT-A-GTGTT-GAGCCTGGA-A-T-TTCCTC-----------------------GCA-T-T-AATA---AGAAT-A-A--TG-A-AAA-T-C-A--------TC-ATA-TTT-A----AAT--TGCACCCCTTTA-T---GAGAAA-T--A-----------------CTAA---ACA-----ACAT--GAGT-TTCC-TT-CAAGCAA-TAACGGCGTGATACCAAGA----A-AATA---CAA---T-A-T-T-GA--TGAGGGG-TA-CT-CTTG---AGCCTC-CAAACTA-CTC-AT-TC--------A-GAG-T-AA-AGT-AGCG--T-CAGA--GAG-A--TAACT-CTTACA-TTTTTC-GGGATA---ACTC-TTGCGATATTTAT-GATCGA--T--CGCCGC
gi|10 : CCACATAAAA-TAA-AT-TGT-C-T-GGTCT-CT-CG-GGGAA---A-TG-A-TT-----GA-AAAGT-G-GGTAGG-TAGTCAAG--A-GG--GTTTAT-TT-TT-TT---TGTTTCTT---ATTT-CT--G-A-AGA-GC-----G-AGGTA-GGAGATTTATTTTGGTT--G-TTT-TAAA-ATCAA--A-CGGAT-AT--A-AT-ACCTG-AA-TAT--GTTCAA-CATATT--TACG-AAA-GTAA----T-------CTTCA-AGG-GCAATC-GACACTT--G-TA-TATGCACA-GA--TGA--TC--AG-T---AAAT-AAAAACTGTTG----AC-T---A--AA-ATA-ATGTTTTTT-G-GG---AT-T------------G------C-------A--AG-TA--G-GTGACCC-ACAA-G-ATTCG----A----A---Agc
gi|11 : gA----CAT-AA-A-TTGCA-A-C-GG-T-A-----AAC-CCAT-AT----T-GAGGCTGGA-ATT----CTC-TGCTT--------AT---------A-T-A-AAAA---AA-AT-A-A--TG-A-AAG-T-ACA--------TC-ATA--TT-A----AAA--TGCA-CC--TTA-T---GAGAAACT--A-----------------CTAA-C--C------CAAT--GA-T-TTC---TCCA----A-TA--GGC---ATA-----A----ACAA-A---TAAA--TCA-A-T-CG--TGA--GGATA--T-CTT----AT-C-C-CAAACTA-CTC-A--TC--------ACGAT-T-AA-AGT-AGCG--T-CA-A-GGAGCA--TA--T-CTTACATTTTTCG-AGAATA---A--C-TTGC-ATT--CAT-GATCGA--TGGCGCCGC
gi|12 : ttgtgacAA---GG-ATTA-AGGTG-AGAAG-TCA-A--------TC-AT--TTT-CTCGTAATCGTGCA-CC-TTTA-T---GAGGAG-T--ATTTGTGCCAGTAATTTACTAAGC-AC------CAAT--AT-T-TTCC-TTC--AGT-A-TA--G-C---ATT-----G----T-AA-----CAAC--T-A---T-AT--TGA--GT-TATCT-C-TG---AG-CTC-CAA--TG-CTC-A--TC--------ACGAG-T-GACAGTGAGC---T-CAGAGGGAG-A--TATCT-TTTATATTCTTTC-GGG-TA---ACTG-AT---ATT--TAT-GATCGA--T-GCGg
gi|13 : tctgtcatattattAA---GG-ATTA-AGGTG-AGAAG-TCA-A--------TC-AT--TTT-CTCGTAATCGTGCA-CC-TTTA-T---GAGGAG-T--ATTTGTGCCAGTAATTTACTAAGC-AC------CAAT--AT-T-TTCC-TTC--AGT-A-TA--G-C---ATT-----G----T-AA-----CAAC--T-A---T-AT--TGA--GT-TATCT-C-TG---AG-CTC-CAA--TG-CTC-A--TC--------ACGAG-T-GACAGTGAGC---T-CAGAGGGAG-A--TATCT-TTTATATTCTTTC-GGG-TA---ACTG-AT---ATT--TAT-GATCGA--T-GCGgcag
gi|14 : tctgtcatattattTGTA-----------A------A-------A--AG-CGGAG-ATAACTC-ACAC-A-A-TCA----A----A-------T-A-CTAATC--CTCCAAC-TAA--GTGAAAATGAAT--AAG--AA--T-A-T--CCT-GTGA-C---A--T-T-A-TT-A-TG-TCGAA----A---AT--A---TT-T-CCCAAA-TT-A---TA-GA-AATAT---TATCAATGT-ATTTAT-AAAC---AA-GT----TA-CA-TTT-AAA-TTGTTgcag
gi|15 : aaatgtgttttcttggataaacatttaaatcattATAAAA--AA-ATATGT-C-T-G-T-T-CT-CG-GAAA-------G-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GTTGTTAAT-TT-TT---TG-TT-TT---ATTTC------A-AGA-GG-----A-GGGT--GGGATTTTATTTT--TTTGG-TTT-TTAA---TAA--A-C-GAT-AT--A-AA-AACTGAAA-TG---ATTCAA----ATT--TACG--AATGTGA----T----T-
gi|16 : ggcaCCACATAAAAATAATAT-TGTTC-T-TGG-T-CT-CGTGGCAA---TGTGCA-TTTT--GAA-AA-GTGG---TAGGATTG----G-TA-GT--GGTTTT-AT-TT-TTGATTATTT-AT---ATATCCC--ATA-AGAAGCG----A-GGGTA-GGG-TTTTATTTT--TT--GATTTATTAA-tcaggac
gi|17 : g-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTCGA--TC--------A-TCA-C-G--AGT-AGCG--T-CTGA-caccatagtcataactattgtataaaaacct
gi|18 : TAAAA-TAA-AT-TAT-C-T-GGT-T-CT-CA-GAAA-----------TTTT--GAA-AAAGTGT-G-TAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---ttatgttgtgtggatgaaagttcggttttaagtcttaaatt
gi|19 : ccA-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA----------------------GATCGA--T-GCGTGGCatt
gi|2 : tccgatatagtgaatgtCCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CTTCG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GCCTAATA-GGGTA-GG-ATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-AT--A-AATACCTG-AA-TAGGGATTCAA-CATATACATACG-AAATGTAAATTGTGACGT-ATGTCATGGG-GCAATC-AA-ACTT--GGTA-TGC-CGTA-GAGGTGACGTC--AGGT---AAATAGAAGATTGTTGTTTTAC-T---C--AA-TAA-ATGTTTGTT-G-GG---ATATA-----------------------------GG-TAAGG-GTGACCC-ACAA-A-A-TCA----A----A---ACTCT-C-CTGATTT-CCCCACCGTAAAAGTGAA--TGAAT--AAGAAAA--T-AAT--CCT-TTGA-C---A--T-T-ATTTAA-TG-TCT-A----A---AT--T---TT-T-CCC--A-TT-C---TA-CGCAGTAT---T-TCA-TGT-ATTAA--AAA----CA-GTCCAATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TGAAT--GAAAA----CAT-AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATGT-TT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-A-A-TTT-A----AAT--TGCA-CCCTTTA-T----AGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAGA-A-TA--GGC---ATA-----A----A-AA-C---CAAC--T-A-C-TGGA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGA-GGAG-AATTAACT-CTTAAATTTTTTC-GGGATA---ACTCTTTGC-AAA--TAT-GATCGA--T-GTGCGGCgg
gi|20 : -AGCG--T--AGA-GGAG-A--CAACTGCTTACATTTTTTC--GGAT----ACTC-TTGC-A-A--T-T-GATT-A--TAGCGCG
gi|22 : cCCACCTAAAA-TAA-TT-TCT-C-T-GGT-T-CT-TG-GACAA---C-TG-A-TTTT--GAA-tc
gi|23 : g-TGT-C-TTGGT-T-CT-CG-GGAAAC--T-TG-ATTTTT--GAA-AAA---G-GGTAGG-T
gi|3 : AAA-TAA--T-TGT-C-T-GGT-T-CT-CG-GGAAAATAT-GA-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----GATAAGG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCCCCA-A-AGA-GC-----A-GGGTA-GGGATTTTAATTT--TT--G-TTT-TTAA-ATCAATGA-C-GATAAT--ACAG-ATC-A-CA-TA-----TCAACCATGAT--TACA-AAATGTA------------ATTTCA-AGG----AT--AA-ACTT--G-TA-TG--TGTA-AA--TGAC-TA--GA-TACAAAATAAAAATTGGTGG----AC-TATGA--AA-TAA-ATGTTTGTT-G-AG---ATATATAATTACATTCA------T-------T--GG-TAAGG-GTGACCC-ACAA-C-A-TCAATTTA----A---ATACTGC-CTGATT--CCCCACC-T--AAGTG-A--TGAAT--AAGAAAA--T-ACT--CCT-TTGA-C---A--T-TCATTT-ATTG-TCT-A----A---ATGAT---TT-T-CCC-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CAGGTCC-ATA-AA-TTTAAAA-TTGTTATT-CA-TAAA---TCGTG-AT--GACCAT---CATCAGCA-TTGAA-AGC-GG-T-AATTTTAAA-C-ATAATG--TT-GAG-CTGGA-AAT-TT-CTC-TG--------------------GCA-T-T-AATA---AGAAT-A-A--TGAA-AAG-T---A--------TC-ATA-TTT-A----AAT--TGCACCCCTTTA-T---GAGAAA-T--A-----------------CTAA---ACA-----ACAT--GAGT-TTCC-TT-CAAG--A-TA--GGC---ATA-----A----A-GA-AAATCAA---T-ATT-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTACCTC-ATTTC--------A-G-G-T-AA-AGT--GCG--TCCAGA--GAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-ATATTTATGGATCGA--T-GCGCG
gi|4 : cactAATGGAGGTA---TAG----T-TA-AGAGGTTTTT-ATATT-TC---TGTTT-TTTTAATTGTCC--A-AGAGAAGC-----AAGGGTACGGGATTTAATTTT--T---G-TTT-TTAA-ATCAA--AAC-GA--AT--A-AA-ACTGA-AA-AA---ATTCAA-CATATT--TACG-AA-T-CAG----G----T-ATTTCA-AGG-GCA-TC-AA--CTT--G-TA-T---TGTA--A--TGAC-TC--AG-T---AA-TAAAA--TTGTTG----ACAT---A--AA-TTA-ATGTTTGT----GG---ATA-------------------------------GG-TAAGG-GTGACCC-ACAA-ATA-TCA----A----T---ACTCT-AGCTGATT--CCCCACC-TAAAAGTGA---TAGAT--AAGAAAA--T-A-TTGCTT-TCGA-CTTAA--T-T-ATA--A-TG-TTC-A----AT--AT--T---TC-CACCC-AA-TT-AA--TAACA-AGTATATAT-TCAT-GT-ATTA-T-AAAC---AA-GTC--ATACAA-TTT-AAAATTGT-ATT-CA--AAA---TC-T--AT--GAAAA----CA-----A-T--AA-A-C-AT-T-G-----AAC-------TGT-CT-GAGACTGGA-ATA-TTCCTCCTGCTTT-ACAAAAATCCATCT-GCAAT-T-AAAA---AA-ATTG-A--TG-A-A-G-T-A-A--------AC-ATA-TTT-G----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CAAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----A-AA-A---AAACAAT-A-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------ACAAG-T-AA-AGT-AGCG--T-CAGA-GAAG-A--TAACG-CTTACATTTTTTC-GGGATA---AGTC-TTGC-ATATTTAT-GATCGA--T-GCGTAGCcag
gi|5 : atCCACATAAAA-TAA-AT-TGT-CCT-GGT-TTCT-CG-GGAAA---T-TG-A-TTTTTTGAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GATTTT-AT-TT-TT---TGTTT-TT---Ag
gi|5 : GGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-ATCTA-AA-ACCTG-AAATG---ATTCAA-CATATT--TACG-AAAT-TAA----T----T----TCA-AGG-GCA-TC-AA--CTT--G-TA-TGC-CACA-GA--TGAC-TC--AG-T---AAATAAA---CTGTTG----AC-T---A--AAATAA-ATGTTTGTT-G-GG----TA-G-----------G------T-------AC-AG-TAAGG-GTGACCC-ACCA-A-T-TCA----A----T---ACTCT----TGATT--CCCCACC-TAAAAGTGA---TGAAT--AAGAA----T-A-T--CCT-TTGA-C---A--T-T-ATTT-A-TGGTCT-A----A---ATA-T---TT-T-CCC-AA-TT-A---TA-CG-AGT-----T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TT-TTATTTCA-TAAAATCTC-TG-AT--GAAA-----CAT-AACA-TTGAA-A-C-GG-TAA-----AACGC-ATAATG--TT-GAG-CTGGA-ATT-T--CTC-TTCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AA-AT-A-A--TG-A-AAG-T-A-ATCATATTTTC-ATA-TTT-A----AAT--TG---TCCCTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA------AATGCGA---TTCC-TT-CAAG--A-TA--GGC---ATA-----A----A-AATA---CAA---T-A-CTT-GA--TGA--GGTTA-CTACTTG---AG-CTCACAAACTA-CTC-AT-TC--------A-----C-G--AGT-AGCG--T-CA-A-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-A-A--TAT-GATCGA--T-GCaatcaaacgatatctaaaacctgaaatgattcaacatatttacgaaattaatttcaagggcatcaacttgtatgccacagatgactcagtaaataaactgttgactaaaataaatgtttgttgggtaggtacagtaagggtgacccaccaattcaatactcttgattccccacctaaaagtgatgaataagaatatcctttgacattatttatggtctaaatattttcccaattatacgagtttcattgtattaataaaccagtccataaatttaaattttatttcataaaatctctgatgaaacataacattgaaacggtaaaacgcataatgttgagctggaatttctcttctttaaaaatcctctgcattaaaaaaataatgaaagtaatcatattttcatatttaaattgtcccttatgagaaatactaacacaaatgcgattccttcaagataggcataaaaatacaatacttgatgaggttactacttgagctcacaaactactcattcacgagtagcgtcaaggagataactcttacattttttcgggataactcttgcaatatgatcgatgcagc
gi|6 : ccacataaaataaattgtcctggtttctcgggaaattgattttttgaaaaagtgggtaggtaCCACATAAAA-TAA--T-TGT-C-T-GGT-T-CT--G-GGAAA---T-TG-A-TTTT--GAAGAAAGT-G-GGTAGG-TAG----G-TA-GT--GGTTTT-AT-TTCTT---TGTTT-TT---ATTTCCC--A-A-AGA-GCG----A-GGGTA-GGGA-TTTATTTT--TT--GTTTT-TTAATATC----A-C-GAT-AT--A-AA-A--TG-AA-AT---GTTCAATCATATT--TACG-GAATGT------T----TAATTTCAGAGGTGC-ATC-GA-AGTT--GCTA-TG--CGTA-GA--TGAC-TG--AG-T-----AT--AAAATTGTTG----AC-T---A--AA-T-A-ATGTTTGTT-G-GG-------------------A------T-------A--GGTTAAGG-G-GACCC-AC-A-A-A-TCA----A----GATTACTAT-T-CCGATCGATCCCACC-TAAATGTG-A--TG-AT--AAGAAAA--T-A-T--ACT-TTGA-C---A--T-T-ATCT-ATTC-CCT-AAAATA---AT--T---TT-C-CCC-AA-TT-A---TA-CG-AGTAA---T-TCATTGT-ATTTAT-TAAC---CA-GTCC-A-A-AA-TTT-AAA-TTGTT-TT------AA---T--TG-AT--G-AAA----CATAAACAGTTGAA-A-CGGG-T-A-----AAC------ATGA-TT-TAG-CTTGG-ATTATCCCTC-TGCTTTAA--AAAATTT-TCTGGCA-T-T-AAAA---A--AT-A-A--TG-A-AAG-T-A-A--------TA-A-A-TTTAA----AAT--TGCA-CCCTTTAGT---GA-AAA-T--A-----------------CT-A-C-A-A-----CAA---GA-T-TTCC-TTCCAAG--AGTA---AC---ATA-----A----A-GA-A---CAGA--T-A-T-G-GA--TGG--CG-TA-AT-CTTG---AG-CTC-CAAACTA-CTCAA--TC--------A-agc
gi|7 : TCAA-CATATT--TACGGAAATGT-----------C-ATTTCA-AGG-G--ATCCAA-ACTCTCG-TACTGCTCGCAAGA--TGAC-TCTCAG-TTA-GAATCATAAATTGTTG----AC-T---ACCAA-TAACATGTTT-TT-GCGG---CGATA-----------G------T-------A--CA-T--GG-CTGGACC-ACAA-A-A-TCACA--AT---A---ACTCT-C----ATT--GCC-ACC-TAAAAGTAAA--TGAATTTAAGAAAA--TTA-T--CCTCTTGA-C---AGGTAT-ATTT-A-TG-TCT-A----A---AG--A---TTAT-CCC-AA-TTTA---TA-CG-AGTAT---T-TCATTGTCATTAAT-AAATGTTCA-GTC--ATA-AA-TTT-AAA-TTGTT-TT-CA-TAAA---CA-TG-AT--GAA------CAT-A-CA-TTGAACG-C-GGAT-T-----AAC-C-AT-ATGT-TTTGAG-CTGGATAAT-TTCCTC-TGCTTTTA--AAAATCC-TCT-GCA-TCT-AAAATATAC-AT-ATA--TG-A-AAGCT-A-A--------TC-ATA-TTC-T----AAT--TGC---TCTTTA-T---GGACCA-TTAA-----------------CTAA-CCACA-----CAAT--GA-T-TTCCATTCCAAG----TA--G-C---ATA-----A----A-AA-AAA-CAAT--G-A-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CCC-AAAACT--CTC-AAGTC--------C-GAGATAGA-AGT-AGCGGTT-CAGc
gi|8 : AGG-GTGACCC-ACAA-A-A-TCA----A----AT--ACT-----CCGATT--C
gi|8 : T--CCCCACC-TAAG-GTGA---TGAAT--AAGAAAA--T-A-T--ACT-T----C---A--T-T-ATCT-A-TGTTCT-A----AAATAT--T---TT-C-CCC-AA--T-A---TA-CG-AGTA----T-TCATTGTGATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TG-ATTGGAAAT----TA--AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATG--TT-GAG-CTGGA-A-T-TTCTCC-TGCTTC-A--AAAATTT-TCT-GCA-T-TAAAAA---AA-AT-A-A--TG-A-AAG-T-A-A--------TCAATATTTT-A----AAT--TGCA-CCCTTTA-TTGAGAGAAA-T--------------------CTAA-C-ACAAACAGCAAT--GA-GATTCC-TT-CAAG--A-TA--AGC---ATA-----A----A-AA-A----AAT--C-A-A-T-GATGTGAT-GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TCACTCGTTTA-AAG-T----AGT-AGCG--T-CAGA-GGAG-A--TAACT-CTTACATTTTTTCAGAGATAAGTACT--TTGC-A-A--TAG-GATCGATGT-GCGCGGCgannnnnnnnnnnnnnnnnnnnnnnnntccacgcgatccccacctaaggtgatgaataagaaaatatacttcattatctatgttctaaaatattttccccaatatacgagtattcattgtgattaataaaccagtccataaatttaaattgttattcataaatctgattggaaattaaacattgaaacggtaaaccatatgttgagctggaatttctcctgcttcaaaaattttctgcattaaaaaaaataatgaaagtaatcaatattttaaattgcaccctttattgagagaaatctaacacaaacagcaatgagattccttcaagataagcataaaaaaaatcaatgatgtgatggtactcttgagctccaaactactcatcactcgtttaaagtagtagcgtcagaggagataactcttacattttttcagagataagtactttgcaataggatcgatgtgcgcggc
gi|9 : agggtgacccacaaaatcaaatactccgattcgannnnnnnnnnnnnnnnnnnnnnnnntccacgcgaTTGTT-G-GGGATATATA-----------AATTCATT-------G--GT-TAAGG-GTGACCC-ACAA-A---TCA----A----AT--ACTCT-----GATT--CCC-ACC-TAAA-GTGA---TGAAT--ACTAAAA--T-A-T--TCT-TTGAAC---A--T-T-ATTT-A-TG-TCT-A----A---AT--A---TT-T-CCC-AATTT-ATTTTA-CG-AGTA----T-TCATTGT-ATTTAT-AAAC---CT-G-AC-ATA-AA--TT-AAA-TTGGTATT-----------------------AAA----CAT-AACA-TTGAC-A-C-AG-T-AT----AAC-C-AC-ATG--TT-GAG-CTGGA-A-T-TTCCTC-TGCTTTAA--AAAAT--------CA-T-A-ATAA---AG--T-A-T--T-----AG-T-A-A--------TC-ATA-TTT------AAT--TGC--CCTTTTATT---GAGAAA----A-----------------CAAA-C-ACA-----CAAT--GA-T-TT-C-TTCC-AG--A-TG--AGCT--ATA-----AAACTA-AA-A---CAAT--T-A-C-T-GA--TGA--GG-TA-CT-CTTGTTTA--CTC-CAAACTT-ATC-A--TC--------
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTTTGTGAATGTTGTTTTTTCCCAATTTTCCTAAAACAACGGTGATTTTCCCAATTT
Alignments
lowQualScore : 11111 1 1 2222222 2222222 33333333333333 1 11111 11 1 111 111 1111 111111 7777777777777777777777777777777777777 222222222222222222222 2222 1 1 111 111111 111 1111 111111 11111 11 22222 11 1 1 22222222222222222 1 11111111 222222 44444444444444444 111111 11 11111 111111111 11 2222222222222222222 2222
lowQualScore : 4 77 3 3 3 3 3 3 3 3 22222 3 3 55 3 1 3 5 3 8888 4 4 55 4 4 4 777 4 777 7777 5 0 5555555 4 66 66 8 4 4 66 5 5 5 66 5 5 1 0 5 0000000 8 66 4 1 66666666666666 0 33333 5 11 66 0 5 999 55 66 5 999 5 555 6 22 5555 5 666666 5 3 5 4 4 3333333333333333333333333333333333333 4 3 3 3 555 777777777777777777777 88 4 5 1111 55 55 4 2 55 4 4 777 55 4 8 4 2 8 4 8888 111 555555 4 4 4 4 4 111 4 4 2222 4 8 4 777 8 66 4 4 4 4 1 88888 333333 4 66 33333 00 1 4 4 8 4 4 4 11111 999999 99 4 2 4 0 4 4 44444444444444444 4 444 555 88 0 3 99 3 6 3 777 22222222 3 3 000000 99 77 3 6 555 3 44 66666666666666666 888 111111 44 777 3 6 44 3 5555 999 8888888888 3 88888 777777777 3 44 77 6 6 3 555 3 3 3 6 44 3333333333333333333 6 44 3 6 3 55 0 3 3 666 55 1 3 4444 3 55 7
lowQualScore : . .. . . . . . . . . ..... . . .. . . . . . .... . . .. . . . ... . ... .... . . ....... . .. .. . . . .. . . . .. . . . . . ....... . .. . . .............. . ..... . .. .. . . ... .. .. . ... . ... . .. .... . ...... . . . . . ..................................... . . . . ... ..................... .. . . .... .. .. . . .. . . ... .. . . . . . . .... ... ...... . . . . . ... . . .... . . . ... . .. . . . . . ..... ...... . .. ..... .. . . . . . . . ..... ...... .. . . . . . . ................. . ... ... .. . . .. . . . ... ........ . . ...... .. .. . . ... . .. ................. ... ...... .. ... . . .. . .... ... .......... . ..... ......... . .. .. . . . ... . . . . .. ................... . .. . . . .. . . . ... .. . . .... . .. .
lowQualScore : 0 44 6 6 6 6 6 6 6 6 77777 6 6 00 6 4 6 0 6 5555 0 0 55 0 0 0 000 4 888 8888 0 0 4444444 4 11 11 9 4 4 99 0 0 0 99 0 0 4 1 0 1111111 9 11 4 1 44444444444444 0 11111 0 22 99 0 0 999 22 99 0 444 0 666 2 22 6666 0 555555 0 6 0 4 4 4444444444444444444444444444444444444 0 6 6 6 111 222222222222222222222 66 0 8 8888 55 55 0 0 55 0 0 000 55 0 0 0 0 0 0 5555 000 333333 0 0 0 0 0 000 0 0 8888 0 0 0 000 0 55 0 0 0 0 9 11111 111111 4 11 44444 33 3 0 0 0 0 0 0 00000 111111 66 0 0 0 9 0 0 77777777777777777 0 222 888 22 0 3 22 3 7 3 111 11111111 3 3 000000 22 88 8 7 888 3 66 77777777777777777 333 666666 66 111 3 7 66 3 3333 222 9999999999 3 22222 000000000 1 22 33 2 2 1 444 1 1 1 2 66 8888888888888888888 7 66 3 7 6 00 2 6 6 444 00 4 6 2222 6 00 3
consensus : CCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC-----A-GGGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-AT--A-AA-ACCTG-AA-TA---ATTCAA-CATATT--TACG-AAATGTAA----T----T-ATTTCA-AGG-GCAATC-AA-ACTT--G-TA-TGC-CGTA-GA--TGAC-TC--AG-T---AAATAAAAAATTGTTG----AC-T---A--AA-TAA-ATGTTTGTT-G-GG---ATATA-----------A------T-------A--GG-TAAGG-GTGACCC-ACAA-A-A-TCA----A----A---ACTCT-N-CTGATT--CCCCACC-TAAAAGTGAA--TGAAT--AAGAAAA--T-A-T--CCT-TTGA-C---A--T-T-ATTT-A-TG-TCT-A----A---AT--T---TT-T-CCC-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TG-AT--GAAAA----CAT-AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATGT-TT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-ATA-TTT-A----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----A-AA-A---CAAC--T-A-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGA-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-ATA--TAT-GATCGA--T-GCGCGGC
Reference ( family-835 ) : CCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC-----A-GGGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-AT--A-AA-ACCTG-AA-TA---ATTCAA-CATATT--TACG-AAATGTAA----T----T-ATTTCA-AGG-GCAATC-AA-ACTT--G-TA-TGC-CGTA-GA--TGAC-TC--AG-T---AAATAAAAAATTGTTG----AC-T---A--AA-TAA-ATGTTTGTT-G-GG---ATATA-----------A------T-------A--GG-TAAGG-GTGACCC-ACAA-A-A-TCA----A----A---ACTCT-N-CTGATT--CCCCACC-TAAAAGTGAA--TGAAT--AAGAAAA--T-A-T--CCT-TTGA-C---A--T-T-ATTT-A-TG-TCT-A----A---AT--T---TT-T-CCC-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TG-AT--GAAAA----CAT-AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATGT-TT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-ATA-TTT-A----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----A-AA-A---CAAC--T-A-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGA-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-ATA--TAT-GATCGA--T-GCGCGGC
gi|1 : ACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC-----AAGGGTA-GGGATTTTAATTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-AT--A-AA-ACCTG-AAATA---ATTCAA-CATGAT--TACA-AAATGTAA----T----T----TCA-AGG-GCA-TC-A---CTT--G-TA-TGT--GTA-AA--TGAC-T---AG-T---AAA-ATAAAATTGGTGG---AC-T---ATGAA-TAA-ATGTTTGTTTG-AGT--ATATA-----------A------TTACCTTCATTGG-TAAGGCGTGACCCTACAACA-A-TCA----ATTTAA---ATACT-G-CTGATT--CCCCACC-TAAAAGTGA---TGAAT--AAGAAAAACT-ACT--CCT-TTGA-C---A--T-TCATTT-AATG-TCT-A----A---AT--TATCTT-T-CCC-AA-TT-A---TA-CG-ACTAT---T-TCATTGT-ATTAATAAAAC---CAGGTCC-ATA-AATTTT-AAA-TTGTTATT-CATTAAA---TCGTG-AT--GAAAACCATCAC-AGCA-TTGAA-AGC-GG-T-ATTT--AAA-C-AT-A-GTGTT-GAGCCTGGA-A-T-TTCCTC-----------------------GCA-T-T-AATA---AGAAT-A-A--TG-A-AAA-T-C-A--------TC-ATA-TTT-A----AAT--TGCACCCCTTTA-T---GAGAAA-T--A-----------------CTAA---ACA-----ACAT--GAGT-TTCC-TT-CAAGCAA-TAACGGCGTGATACCAAGA----A-AATA---CAA---T-A-T-T-GA--TGAGGGG-TA-CT-CTTG---AGCCTC-CAAACTA-CTC-AT-TC--------A-GAG-T-AA-AGT-AGCG--T-CAGA--GAG-A--TAACT-CTTACA-TTTTTC-GGGATA---ACTC-TTGCGATATTTAT-GATCGA--T--CGCCGC
gi|10 : CCACATAAAA-TAA-AT-TGT-C-T-GGTCT-CT-CG-GGGAA---A-TG-A-TT-----GA-AAAGT-G-GGTAGG-TAGTCAAG--A-GG--GTTTAT-TT-TT-TT---TGTTTCTT---ATTT-CT--G-A-AGA-GC-----G-AGGTA-GGAGATTTATTTTGGTT--G-TTT-TAAA-ATCAA--A-CGGAT-AT--A-AT-ACCTG-AA-TAT--GTTCAA-CATATT--TACG-AAA-GTAA----T-------CTTCA-AGG-GCAATC-GACACTT--G-TA-TATGCACA-GA--TGA--TC--AG-T---AAAT-AAAAACTGTTG----AC-T---A--AA-ATA-ATGTTTTTT-G-GG---AT-T------------G------C-------A--AG-TA--G-GTGACCC-ACAA-G-ATTCG----A----A---Agc
gi|11 : gA----CAT-AA-A-TTGCA-A-C-GG-T-A-----AAC-CCAT-AT----T-GAGGCTGGA-ATT----CTC-TGCTT--------AT---------A-T-A-AAAA---AA-AT-A-A--TG-A-AAG-T-ACA--------TC-ATA--TT-A----AAA--TGCA-CC--TTA-T---GAGAAACT--A-----------------CTAA-C--C------CAAT--GA-T-TTC---TCCA----A-TA--GGC---ATA-----A----ACAA-A---TAAA--TCA-A-T-CG--TGA--GGATA--T-CTT----AT-C-C-CAAACTA-CTC-A--TC--------ACGAT-T-AA-AGT-AGCG--T-CA-A-GGAGCA--TA--T-CTTACATTTTTCG-AGAATA---A--C-TTGC-ATT--CAT-GATCGA--TGGCGCCGC
gi|12 : ttgtgacAA---GG-ATTA-AGGTG-AGAAG-TCA-A--------TC-AT--TTT-CTCGTAATCGTGCA-CC-TTTA-T---GAGGAG-T--ATTTGTGCCAGTAATTTACTAAGC-AC------CAAT--AT-T-TTCC-TTC--AGT-A-TA--G-C---ATT-----G----T-AA-----CAAC--T-A---T-AT--TGA--GT-TATCT-C-TG---AG-CTC-CAA--TG-CTC-A--TC--------ACGAG-T-GACAGTGAGC---T-CAGAGGGAG-A--TATCT-TTTATATTCTTTC-GGG-TA---ACTG-AT---ATT--TAT-GATCGA--T-GCGg
gi|13 : tctgtcatattattAA---GG-ATTA-AGGTG-AGAAG-TCA-A--------TC-AT--TTT-CTCGTAATCGTGCA-CC-TTTA-T---GAGGAG-T--ATTTGTGCCAGTAATTTACTAAGC-AC------CAAT--AT-T-TTCC-TTC--AGT-A-TA--G-C---ATT-----G----T-AA-----CAAC--T-A---T-AT--TGA--GT-TATCT-C-TG---AG-CTC-CAA--TG-CTC-A--TC--------ACGAG-T-GACAGTGAGC---T-CAGAGGGAG-A--TATCT-TTTATATTCTTTC-GGG-TA---ACTG-AT---ATT--TAT-GATCGA--T-GCGgcag
gi|14 : tctgtcatattattTGTA-----------A------A-------A--AG-CGGAG-ATAACTC-ACAC-A-A-TCA----A----A-------T-A-CTAATC--CTCCAAC-TAA--GTGAAAATGAAT--AAG--AA--T-A-T--CCT-GTGA-C---A--T-T-A-TT-A-TG-TCGAA----A---AT--A---TT-T-CCCAAA-TT-A---TA-GA-AATAT---TATCAATGT-ATTTAT-AAAC---AA-GT----TA-CA-TTT-AAA-TTGTTgcag
gi|15 : aaatgtgttttcttggataaacatttaaatcattATAAAA--AA-ATATGT-C-T-G-T-T-CT-CG-GAAA-------G-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GTTGTTAAT-TT-TT---TG-TT-TT---ATTTC------A-AGA-GG-----A-GGGT--GGGATTTTATTTT--TTTGG-TTT-TTAA---TAA--A-C-GAT-AT--A-AA-AACTGAAA-TG---ATTCAA----ATT--TACG--AATGTGA----T----T-
gi|16 : ggcaCCACATAAAAATAATAT-TGTTC-T-TGG-T-CT-CGTGGCAA---TGTGCA-TTTT--GAA-AA-GTGG---TAGGATTG----G-TA-GT--GGTTTT-AT-TT-TTGATTATTT-AT---ATATCCC--ATA-AGAAGCG----A-GGGTA-GGG-TTTTATTTT--TT--GATTTATTAA-tcaggac
gi|17 : g-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTCGA--TC--------A-TCA-C-G--AGT-AGCG--T-CTGA-caccatagtcataactattgtataaaaacct
gi|18 : TAAAA-TAA-AT-TAT-C-T-GGT-T-CT-CA-GAAA-----------TTTT--GAA-AAAGTGT-G-TAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---ttatgttgtgtggatgaaagttcggttttaagtcttaaatt
gi|19 : ccA-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA----------------------GATCGA--T-GCGTGGCatt
gi|2 : tccgatatagtgaatgtCCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CTTCG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GCCTAATA-GGGTA-GG-ATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-AT--A-AATACCTG-AA-TAGGGATTCAA-CATATACATACG-AAATGTAAATTGTGACGT-ATGTCATGGG-GCAATC-AA-ACTT--GGTA-TGC-CGTA-GAGGTGACGTC--AGGT---AAATAGAAGATTGTTGTTTTAC-T---C--AA-TAA-ATGTTTGTT-G-GG---ATATA-----------------------------GG-TAAGG-GTGACCC-ACAA-A-A-TCA----A----A---ACTCT-C-CTGATTT-CCCCACCGTAAAAGTGAA--TGAAT--AAGAAAA--T-AAT--CCT-TTGA-C---A--T-T-ATTTAA-TG-TCT-A----A---AT--T---TT-T-CCC--A-TT-C---TA-CGCAGTAT---T-TCA-TGT-ATTAA--AAA----CA-GTCCAATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TGAAT--GAAAA----CAT-AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATGT-TT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-A-A-TTT-A----AAT--TGCA-CCCTTTA-T----AGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAGA-A-TA--GGC---ATA-----A----A-AA-C---CAAC--T-A-C-TGGA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGA-GGAG-AATTAACT-CTTAAATTTTTTC-GGGATA---ACTCTTTGC-AAA--TAT-GATCGA--T-GTGCGGCgg
gi|20 : -AGCG--T--AGA-GGAG-A--CAACTGCTTACATTTTTTC--GGAT----ACTC-TTGC-A-A--T-T-GATT-A--TAGCGCG
gi|22 : cCCACCTAAAA-TAA-TT-TCT-C-T-GGT-T-CT-TG-GACAA---C-TG-A-TTTT--GAA-tc
gi|23 : g-TGT-C-TTGGT-T-CT-CG-GGAAAC--T-TG-ATTTTT--GAA-AAA---G-GGTAGG-T
gi|3 : AAA-TAA--T-TGT-C-T-GGT-T-CT-CG-GGAAAATAT-GA-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----GATAAGG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCCCCA-A-AGA-GC-----A-GGGTA-GGGATTTTAATTT--TT--G-TTT-TTAA-ATCAATGA-C-GATAAT--ACAG-ATC-A-CA-TA-----TCAACCATGAT--TACA-AAATGTA------------ATTTCA-AGG----AT--AA-ACTT--G-TA-TG--TGTA-AA--TGAC-TA--GA-TACAAAATAAAAATTGGTGG----AC-TATGA--AA-TAA-ATGTTTGTT-G-AG---ATATATAATTACATTCA------T-------T--GG-TAAGG-GTGACCC-ACAA-C-A-TCAATTTA----A---ATACTGC-CTGATT--CCCCACC-T--AAGTG-A--TGAAT--AAGAAAA--T-ACT--CCT-TTGA-C---A--T-TCATTT-ATTG-TCT-A----A---ATGAT---TT-T-CCC-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CAGGTCC-ATA-AA-TTTAAAA-TTGTTATT-CA-TAAA---TCGTG-AT--GACCAT---CATCAGCA-TTGAA-AGC-GG-T-AATTTTAAA-C-ATAATG--TT-GAG-CTGGA-AAT-TT-CTC-TG--------------------GCA-T-T-AATA---AGAAT-A-A--TGAA-AAG-T---A--------TC-ATA-TTT-A----AAT--TGCACCCCTTTA-T---GAGAAA-T--A-----------------CTAA---ACA-----ACAT--GAGT-TTCC-TT-CAAG--A-TA--GGC---ATA-----A----A-GA-AAATCAA---T-ATT-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTACCTC-ATTTC--------A-G-G-T-AA-AGT--GCG--TCCAGA--GAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-ATATTTATGGATCGA--T-GCGCG
gi|4 : cactAATGGAGGTA---TAG----T-TA-AGAGGTTTTT-ATATT-TC---TGTTT-TTTTAATTGTCC--A-AGAGAAGC-----AAGGGTACGGGATTTAATTTT--T---G-TTT-TTAA-ATCAA--AAC-GA--AT--A-AA-ACTGA-AA-AA---ATTCAA-CATATT--TACG-AA-T-CAG----G----T-ATTTCA-AGG-GCA-TC-AA--CTT--G-TA-T---TGTA--A--TGAC-TC--AG-T---AA-TAAAA--TTGTTG----ACAT---A--AA-TTA-ATGTTTGT----GG---ATA-------------------------------GG-TAAGG-GTGACCC-ACAA-ATA-TCA----A----T---ACTCT-AGCTGATT--CCCCACC-TAAAAGTGA---TAGAT--AAGAAAA--T-A-TTGCTT-TCGA-CTTAA--T-T-ATA--A-TG-TTC-A----AT--AT--T---TC-CACCC-AA-TT-AA--TAACA-AGTATATAT-TCAT-GT-ATTA-T-AAAC---AA-GTC--ATACAA-TTT-AAAATTGT-ATT-CA--AAA---TC-T--AT--GAAAA----CA-----A-T--AA-A-C-AT-T-G-----AAC-------TGT-CT-GAGACTGGA-ATA-TTCCTCCTGCTTT-ACAAAAATCCATCT-GCAAT-T-AAAA---AA-ATTG-A--TG-A-A-G-T-A-A--------AC-ATA-TTT-G----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CAAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----A-AA-A---AAACAAT-A-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------ACAAG-T-AA-AGT-AGCG--T-CAGA-GAAG-A--TAACG-CTTACATTTTTTC-GGGATA---AGTC-TTGC-ATATTTAT-GATCGA--T-GCGTAGCcag
gi|5 : atCCACATAAAA-TAA-AT-TGT-CCT-GGT-TTCT-CG-GGAAA---T-TG-A-TTTTTTGAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GATTTT-AT-TT-TT---TGTTT-TT---Ag
gi|5 : GGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-ATCTA-AA-ACCTG-AAATG---ATTCAA-CATATT--TACG-AAAT-TAA----T----T----TCA-AGG-GCA-TC-AA--CTT--G-TA-TGC-CACA-GA--TGAC-TC--AG-T---AAATAAA---CTGTTG----AC-T---A--AAATAA-ATGTTTGTT-G-GG----TA-G-----------G------T-------AC-AG-TAAGG-GTGACCC-ACCA-A-T-TCA----A----T---ACTCT----TGATT--CCCCACC-TAAAAGTGA---TGAAT--AAGAA----T-A-T--CCT-TTGA-C---A--T-T-ATTT-A-TGGTCT-A----A---ATA-T---TT-T-CCC-AA-TT-A---TA-CG-AGT-----T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TT-TTATTTCA-TAAAATCTC-TG-AT--GAAA-----CAT-AACA-TTGAA-A-C-GG-TAA-----AACGC-ATAATG--TT-GAG-CTGGA-ATT-T--CTC-TTCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AA-AT-A-A--TG-A-AAG-T-A-ATCATATTTTC-ATA-TTT-A----AAT--TG---TCCCTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA------AATGCGA---TTCC-TT-CAAG--A-TA--GGC---ATA-----A----A-AATA---CAA---T-A-CTT-GA--TGA--GGTTA-CTACTTG---AG-CTCACAAACTA-CTC-AT-TC--------A-----C-G--AGT-AGCG--T-CA-A-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-A-A--TAT-GATCGA--T-GCaatcaaacgatatctaaaacctgaaatgattcaacatatttacgaaattaatttcaagggcatcaacttgtatgccacagatgactcagtaaataaactgttgactaaaataaatgtttgttgggtaggtacagtaagggtgacccaccaattcaatactcttgattccccacctaaaagtgatgaataagaatatcctttgacattatttatggtctaaatattttcccaattatacgagtttcattgtattaataaaccagtccataaatttaaattttatttcataaaatctctgatgaaacataacattgaaacggtaaaacgcataatgttgagctggaatttctcttctttaaaaatcctctgcattaaaaaaataatgaaagtaatcatattttcatatttaaattgtcccttatgagaaatactaacacaaatgcgattccttcaagataggcataaaaatacaatacttgatgaggttactacttgagctcacaaactactcattcacgagtagcgtcaaggagataactcttacattttttcgggataactcttgcaatatgatcgatgcagc
gi|6 : ccacataaaataaattgtcctggtttctcgggaaattgattttttgaaaaagtgggtaggtaCCACATAAAA-TAA--T-TGT-C-T-GGT-T-CT--G-GGAAA---T-TG-A-TTTT--GAAGAAAGT-G-GGTAGG-TAG----G-TA-GT--GGTTTT-AT-TTCTT---TGTTT-TT---ATTTCCC--A-A-AGA-GCG----A-GGGTA-GGGA-TTTATTTT--TT--GTTTT-TTAATATC----A-C-GAT-AT--A-AA-A--TG-AA-AT---GTTCAATCATATT--TACG-GAATGT------T----TAATTTCAGAGGTGC-ATC-GA-AGTT--GCTA-TG--CGTA-GA--TGAC-TG--AG-T-----AT--AAAATTGTTG----AC-T---A--AA-T-A-ATGTTTGTT-G-GG-------------------A------T-------A--GGTTAAGG-G-GACCC-AC-A-A-A-TCA----A----GATTACTAT-T-CCGATCGATCCCACC-TAAATGTG-A--TG-AT--AAGAAAA--T-A-T--ACT-TTGA-C---A--T-T-ATCT-ATTC-CCT-AAAATA---AT--T---TT-C-CCC-AA-TT-A---TA-CG-AGTAA---T-TCATTGT-ATTTAT-TAAC---CA-GTCC-A-A-AA-TTT-AAA-TTGTT-TT------AA---T--TG-AT--G-AAA----CATAAACAGTTGAA-A-CGGG-T-A-----AAC------ATGA-TT-TAG-CTTGG-ATTATCCCTC-TGCTTTAA--AAAATTT-TCTGGCA-T-T-AAAA---A--AT-A-A--TG-A-AAG-T-A-A--------TA-A-A-TTTAA----AAT--TGCA-CCCTTTAGT---GA-AAA-T--A-----------------CT-A-C-A-A-----CAA---GA-T-TTCC-TTCCAAG--AGTA---AC---ATA-----A----A-GA-A---CAGA--T-A-T-G-GA--TGG--CG-TA-AT-CTTG---AG-CTC-CAAACTA-CTCAA--TC--------A-agc
gi|7 : TCAA-CATATT--TACGGAAATGT-----------C-ATTTCA-AGG-G--ATCCAA-ACTCTCG-TACTGCTCGCAAGA--TGAC-TCTCAG-TTA-GAATCATAAATTGTTG----AC-T---ACCAA-TAACATGTTT-TT-GCGG---CGATA-----------G------T-------A--CA-T--GG-CTGGACC-ACAA-A-A-TCACA--AT---A---ACTCT-C----ATT--GCC-ACC-TAAAAGTAAA--TGAATTTAAGAAAA--TTA-T--CCTCTTGA-C---AGGTAT-ATTT-A-TG-TCT-A----A---AG--A---TTAT-CCC-AA-TTTA---TA-CG-AGTAT---T-TCATTGTCATTAAT-AAATGTTCA-GTC--ATA-AA-TTT-AAA-TTGTT-TT-CA-TAAA---CA-TG-AT--GAA------CAT-A-CA-TTGAACG-C-GGAT-T-----AAC-C-AT-ATGT-TTTGAG-CTGGATAAT-TTCCTC-TGCTTTTA--AAAATCC-TCT-GCA-TCT-AAAATATAC-AT-ATA--TG-A-AAGCT-A-A--------TC-ATA-TTC-T----AAT--TGC---TCTTTA-T---GGACCA-TTAA-----------------CTAA-CCACA-----CAAT--GA-T-TTCCATTCCAAG----TA--G-C---ATA-----A----A-AA-AAA-CAAT--G-A-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CCC-AAAACT--CTC-AAGTC--------C-GAGATAGA-AGT-AGCGGTT-CAGc
gi|8 : AGG-GTGACCC-ACAA-A-A-TCA----A----AT--ACT-----CCGATT--C
gi|8 : T--CCCCACC-TAAG-GTGA---TGAAT--AAGAAAA--T-A-T--ACT-T----C---A--T-T-ATCT-A-TGTTCT-A----AAATAT--T---TT-C-CCC-AA--T-A---TA-CG-AGTA----T-TCATTGTGATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TG-ATTGGAAAT----TA--AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATG--TT-GAG-CTGGA-A-T-TTCTCC-TGCTTC-A--AAAATTT-TCT-GCA-T-TAAAAA---AA-AT-A-A--TG-A-AAG-T-A-A--------TCAATATTTT-A----AAT--TGCA-CCCTTTA-TTGAGAGAAA-T--------------------CTAA-C-ACAAACAGCAAT--GA-GATTCC-TT-CAAG--A-TA--AGC---ATA-----A----A-AA-A----AAT--C-A-A-T-GATGTGAT-GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TCACTCGTTTA-AAG-T----AGT-AGCG--T-CAGA-GGAG-A--TAACT-CTTACATTTTTTCAGAGATAAGTACT--TTGC-A-A--TAG-GATCGATGT-GCGCGGCgannnnnnnnnnnnnnnnnnnnnnnnntccacgcgatccccacctaaggtgatgaataagaaaatatacttcattatctatgttctaaaatattttccccaatatacgagtattcattgtgattaataaaccagtccataaatttaaattgttattcataaatctgattggaaattaaacattgaaacggtaaaccatatgttgagctggaatttctcctgcttcaaaaattttctgcattaaaaaaaataatgaaagtaatcaatattttaaattgcaccctttattgagagaaatctaacacaaacagcaatgagattccttcaagataagcataaaaaaaatcaatgatgtgatggtactcttgagctccaaactactcatcactcgtttaaagtagtagcgtcagaggagataactcttacattttttcagagataagtactttgcaataggatcgatgtgcgcggc
gi|9 : agggtgacccacaaaatcaaatactccgattcgannnnnnnnnnnnnnnnnnnnnnnnntccacgcgaTTGTT-G-GGGATATATA-----------AATTCATT-------G--GT-TAAGG-GTGACCC-ACAA-A---TCA----A----AT--ACTCT-----GATT--CCC-ACC-TAAA-GTGA---TGAAT--ACTAAAA--T-A-T--TCT-TTGAAC---A--T-T-ATTT-A-TG-TCT-A----A---AT--A---TT-T-CCC-AATTT-ATTTTA-CG-AGTA----T-TCATTGT-ATTTAT-AAAC---CT-G-AC-ATA-AA--TT-AAA-TTGGTATT-----------------------AAA----CAT-AACA-TTGAC-A-C-AG-T-AT----AAC-C-AC-ATG--TT-GAG-CTGGA-A-T-TTCCTC-TGCTTTAA--AAAAT--------CA-T-A-ATAA---AG--T-A-T--T-----AG-T-A-A--------TC-ATA-TTT------AAT--TGC--CCTTTTATT---GAGAAA----A-----------------CAAA-C-ACA-----CAAT--GA-T-TT-C-TTCC-AG--A-TG--AGCT--ATA-----AAACTA-AA-A---CAAT--T-A-C-T-GA--TGA--GG-TA-CT-CTTGTTTA--CTC-CAAACTT-ATC-A--TC--------
blockSeqs : A TA A T C T C T T T ATAT C T TT G G A G A TCAA A A AG A A C GAT C TTA CCA G A CTAATA C GG TG A A T TG A G A CT C T C A TAGGGA C CA G G AAATTGTGACGTA T GCAA C CA TC G C TGC AG GG G CTC G ACA A AA TTTT A ATGA A T C . C ATATATAATTACATTCATT T . . . AT ATTTAAATACTGC GA G A AAAA TT . T A TG C A TTA GG A C A T G A AAAT AAT GAT A A A T T TTT A C TATA A C . GTT G CA C . A A A TCAT ATCTC A TG AT TC A G C G G A A ATTTT GCATA T T G T T A C TACAAAAATCCATCT A CT TAT GA T T GG A G C AC TCATATTT A T CTCGT CG AC C G TGA C TA TTTGTGCCAGTAATTTA GC AAACAG GC GT A C T G GG T AAACT C AAAT CAATAC G TG T A T A TTT . A C G TT ACTCGTTTAAAGT G GT C G C AT G A AGT CT G . TATT G TG G
blockSeqs : . A . . . . . . . . TG . . . . G . G . . . . . . . . . . . AT . A GA . . . T . . . . . . . . . A . TATG T . . G AGGTA G GCAA . A . C . CTC G . . C . TA A GA . . ACC . A . . . GATATATAAATTCATTG . . . . TA AGATTACTATT T . A AA . . . C . . . . . . . . T T . . T AT . . . . . A . . T . G . . . C . . . . A CAT TCG . . A TA A . . . . . . T CCAT T . A . T . . TAAAAAATTTTCTG . TA . A T . GG . G . CA . . . CTCGT CG A C T . . . TTTGTGCCAGTAATTTA GC A . GA . C T . GG . A . AAA ATCAA . . . T T . . . . . A AG ACGAGTGAC G . . G . . . . . C G . TATT . . A
blockSeqs : . A . . . . . . . . CT . . . . G . G . . . . . . . . . . . G . . AA . . . . . . . . . . . . . C . ATGA . . . G AATT . TGCA . A . . . CC G . . C . . A AT . . A . A . . . CGATAGTA . . . . A CAATAACTCTC . . A AA . . . . . . . . . . . . . . . . . A . . . . . . . . T . . . . . C . . . . A CAT TC . . A T G . . . . . . . CATA A . . . A . . TTAAAAATCCTCT . A . G T . . . . . CA . . . AA . A C . . . . . CC A . T . C A . GG . G . TA CTAC . . . . . . . . . . . T ACGAGTGAC . . . . . . . . . G G . TT . . .
blockSeqs : . A . . . . . . . . A . . . . G . G . . . . . . . . . . . A . . GA . . . . . . . . . . . . . T . TGA . . . G TTAA . GCA . A . . . CC A . . A . . A AA . . C . T . . . TAGGTAC . . . . A ATACTCTAG . . A A . . . . . . . . . . . . . . . . . T . . . . . . . . T . . . . . C . . . . A CAT TC . . A T A . . . . . . . CAT T . . . T . . TAAAAATCCTCT . T . G . . . . . . A . . . A . A C . . . . . C A . T . C . . GG . G . A TATT . . . . . . . . . . . . CGAGATAGA . . . . . . . . . G G . TT . . .
blockSeqs : . A . . . . . . . . T . . . . G . G . . . . . . . . . . . A . . G . . . . . . . . . . . . . C . AAA . . . G AAT . GCA . A . . . T G . . C . . C AA . . A . A . . . ATTGCA . . . . A AAACTCTC . . T A . . . . . . . . . . . . . . . . . T . . . . . . . . A . . . . . C . . . . A CAT CA . . A T A . . . . . . . CAT . . . . T . . TAAAAATCCTCT . T . G . . . . . . A . . . A . A C . . . . . C A . T . C . . GG . A . C TACT . . . . . . . . . . . . ACGATTAA . . . . . . . . . C G . TT . . .
blockSeqs : . T . . . . . . . . C . . . . G . . . . . . . . . . . . . A . . A . . . . . . . . . . . . . C . ATG . . . G AA . GA . . . . . T G . . C . . . . . . A . A . . . ATATA . . . . T AATACTCT . . A A . . . . . . . . . . . . . . . . . T . . . . . . . . T . . . . . C . . . . A CA TC . . T T A . . . . . . . CAT . . . . T . . CAAAAATTTTCT . T . A . . . . . . A . . . A . A C . . . . . C A . T . C . . AG . A . A ATAT . . . . . . . . . . . . ACAAGTAA . . . . . . . . . C G . AA . . .
blockSeqs : . A . . . . . . . . T . . . . G . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . TA . . . . CA . A . . . . . C . . . G . . . . . . A . . . . . ATA . . . . A ATACTCT . . . A . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . T . . A T A . . . . . . . CAC . . . . A . . TAAAAAAT . T . A . . . . . . A . . . G . A C . . . . . C A . T . C . . AG . A . A TGAC . . . . . . . . . . . . AGAGTGA . . . . . . . . . C G . A . . .
blockSeqs : . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ATA . . . . A AATACT . . . A . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AT . T . C . . . . . . A . . . A . A T . . . . . C A . T . C . . G . A . A TCAA . . . . . . . . . . . . ATCACG . . . . . . . . . C . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A AATA . . . A . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . A . . . . . . A . . . T . . . . . . . . C . . T . . . . G . A . A TTAC . . . . . . . . . . . . AGGTAA . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . A . . . A . . . . . . . . C . . T . . . . A . A . . CTA . . . . . . . . . . . . ACG . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . A . . CTA . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons : GA***** TGA**** GCA** A* C** **** A***** ATATA******************************** AATACTCT************* ** N***** CAT** TC**** A**** ***** ** TAAAAATCCTCT***** G* A* C** T** ** GG** *** A********* A**** TNAC***** ** ** ACGAGTGA*********** TN**
originalCons : CCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC-----A-GGGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-AT--A-AA-ACCTG-AA-TA---ATTCAA-CATATT--TACG-AAATGTAA----T----T-ATTTCA-AGG-GCAATC-AA-ACTT--G-TA-TGC-CGTA-GA--TGAC-TC--AG-T---AAATAAAAAATTGTTG----AC-T---A--AA-TAA-ATGTTTGTT-G-GG---ATATA-----------A------T-------A--GG-TAAGG-GTGACCC-ACAA-A-A-TCA----A----A---ACTCT-N-CTGATT--CCCCACC-TAAAAGTGAA--TGAAT--AAGAAAA--T-A-T--CCT-TTGA-C---A--T-T-ATTT-A-TG-TCT-A----A---AT--T---TT-T-CCC-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TG-AT--GAAAA----CAT-AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATGT-TT-GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-ATA-TTT-A----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----A-AA-A---CAAC--T-A-C-T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TC--------A-GAG-T-GA-AGT-AGCG--T-CAGA-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-ATA--TAT-GATCGA--T-GCGCGGC
finalCons : CCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GCGA-----GGGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GAT-AT--A-AA-ACCTG-AATGA----TTCAA-CATATT--TACG-AAATGTAA----T----T-ATTTCA-AGGGCA--TC-AAA-CTT--G-TA-TGC-CGTA-GA--TGAC-TC--AG-T---AAATAAAAAATTGTTG----AC-TA-----AA-TAA-ATGTTTGTT-G-GGATATA--------------------------------GG-TAAGG-GTGACCC-ACAA-A-A-TCAAATACTCT-------------CTGATT--CCCCACC-TAAAAGTGAA--TGAAT--AAGAAAA--T-A-T--CCT-TTGA-C---A--T-T-ATTT-A-TG-TCT-A----A---ATN-----TT-T-CCC-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATTCAT--AAATC----TG-AT--GAAAA----CAT-AACA-TTGAA-A-C-GG-T-A-----AAC-C-AT-ATG--TT-GAG-CTGGA-ATT-TTCCTC-TGCTTTAAAAATCCTCT-----GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-ATA-TTT-A----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CTAAC--ACA-----CAAT--GAT--TTCC-TTCCAAG--A-TAGG--C---ATAA---------A-AAA----CAATNAC-----T-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTC-A--TCACGAGTGA-----------AGT-AGCG--T-CAGA-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC-ATN--TAT-GATCGA--T-GCGCGGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTTTGTGAATGTTGTTTTTTCCCAATTTTCCTAAAACAACGGTGATTTTCCCAATTT
Alignments
lowQualScore : 11111 1 1 11111 1 1111111 33333333333333 1 1111 11 111 111111 1111 222 77777777777777777777777 11111 11111111 2222222 11 2222 111 111 1111 111111 11111 11 22222 1 1 22222222222222222 1 11111111 222222 44444444444444444 111111 1111 22222 111 11 11111111 222222
lowQualScore : 4 77 3 3 3 3 3 3 3 3 22222 3 3 55 3 1 3 5 3 8888 4 4 55 4 4 4 777 4 777 7777 5 0 44444 4 66 66 8 4 4 66 5 5 5 66 5 5 1 0 5 7777777 4 4 4 66 4 1 66666666666666 0 0000 55 88 11 5 5 999 55 66 5 999 5 444444 6 22 5 0000 5 222 5 3 5 4 33333333333333333333333 666 4 3 3 3 3 00000 4 77777777 4 1111111 4 55 4 00 1111 55 55 8 8 55 4 4 777 55 4 8 8 4 4 8 4 8888 444 666 4 4 777 4 4 4 111 4 4 2222 4 8 4 777 8 66 4 4 4 4 1 88888 333333 4 66 33333 00 1 4 4 8 4 4 11111 4 8888888 8 4 55 2 4 0 4 4 44444444444444444 4 444 555 88 0 3 99 3 6 3 777 22222222 3 3 000000 99 77 3 6 555 3 44 66666666666666666 888 111111 44 777 3 6 5555 5555 999 8888888888 3 44444 3 000 3 44 77 6 6 3 555 3 3 3 6666 3 00 333 88888888 6 44 3 6 3 55 0 3 3 666 55 1 000000 3 55 7
lowQualScore : . .. . . . . . . . . ..... . . .. . . . . . .... . . .. . . . ... . ... .... . . ..... . .. .. . . . .. . . . .. . . . . . ....... . . . .. . . .............. . .... .. .. .. . . ... .. .. . ... . ...... . .. . .... . ... . . . . ....................... ... . . . . . ..... . ........ . ....... . .. . .. .... .. .. . . .. . . ... .. . . . . . . . .... ... ... . . ... . . . ... . . .... . . . ... . .. . . . . . ..... ...... . .. ..... .. . . . . . . ..... . ....... . . .. . . . . . ................. . ... ... .. . . .. . . . ... ........ . . ...... .. .. . . ... . .. ................. ... ...... .. ... . . .... .... ... .......... . ..... . ... . .. .. . . . ... . . . .... . .. ... ........ . .. . . . .. . . . ... .. . ...... . .. .
lowQualScore : 0 44 6 6 6 6 6 6 6 6 77777 6 6 00 6 4 6 0 6 5555 0 0 55 0 0 0 000 4 888 8888 0 0 00000 4 11 11 9 4 4 99 0 0 0 99 0 0 4 1 0 1111111 4 4 4 11 4 1 44444444444444 0 6666 99 22 99 0 0 999 22 99 0 444 0 666666 2 22 0 6666 0 555 0 6 0 4 22222222222222222222222 222 4 6 6 6 6 00000 0 88888888 0 1111111 0 00 0 55 8888 55 55 0 0 55 0 0 000 55 0 0 0 0 0 0 0 5555 000 555 0 0 000 0 0 0 000 0 0 8888 0 0 0 000 0 55 0 0 0 0 9 11111 111111 4 11 44444 33 3 0 0 0 0 0 00000 0 9999999 0 0 55 0 0 9 0 0 77777777777777777 0 222 888 22 0 3 22 3 7 3 111 11111111 3 3 000000 22 88 8 7 888 3 66 77777777777777777 333 666666 66 111 3 7 0000 3333 222 9999999999 3 11111 3 555 1 22 33 2 2 1 444 1 1 1 5555 1 44 999 11111111 7 66 3 7 6 00 2 6 6 444 00 4 777777 6 00 3
consensus : CCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC----GAGGGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GATA-T--A-AA-ACCTGAAA-T---G-AT-TCAA-C-ATAT--TTACG-AAATGT-AAT-------T-ATTTCA-AGG-GC-ATC-AA-ACTT--G-TA-TGC-CGTA-GA--TGAC-TC--A-GT--A---AATAAAAAATT-GTTG----AC-TA---AA-TAA-ATGTTTGTTG-GG---A-TATA--------------G-G-T-AAGG-GTGACCC-ACAA-A-ATC-----A-A-----A--TA-CT-CT--CCGA-TT--CCCCACC-TAAAAGTGAA--TGAAT--AAGAAAA--T-A-T--CCT-TTGA-C---A--T-T-ATTT-A-T-G-TCT-A----A---ATN--TT-T-CC---C-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TG-AT--GAAAA----CAT-AACA-TTGAA-A-C-GG-TA-----AA-C-CAT-A-TG-T-T--GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-ATA-TTT-A----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----A-AA-A---C-AATNACT-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-C----TC-A--TCACGAG-T-----GA-AGT-AGCG--T-CAGA-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC---ATTTAT-GATCGA--T-GCGCGGC
Reference ( family-835 ) : CCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC----GAGGGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GATA-T--A-AA-ACCTG-AA-T---G-AT-TCAA-C-ATAT--TTACG-AAATGT-AAT-------T-ATTTCA-AGG-GC-ATC-AA-ACTT--G-TA-TGC-CGTA-GA--TGAC-TC--A-GT--A---AATAAAAAATT-GTTG----AC-TA---AA-TAA-ATGTTTGTTG-GG---A-TATA--------------G-G-T-AAGG-GTGACCC-ACAA-A-ATC-----A-A-----A--TA-CT-CT--CTGA-TT--CCCCACC-TAAAAGTGAA--TGAAT--AAGAAAA--T-A-T--CCT-TTGA-C---A--T-T-ATTT-A-T-G-TCT-A----A---ATN--TT-T-CC---C-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TG-AT--GAAAA----CAT-AACA-TTGAA-A-C-GG-TA-----AA-C-CAT-A-TG-T-T--GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-ATA-TTT-A----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----A-AA-A---C-AATNACT-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-C----TC-A--TCACGAG-T-----GA-AGT-AGCG--T-CAGA-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC---ATNTAT-GATCGA--T-GCGCGGC
gi|1 : ACATAAAA-TAA-AT-TGT-C-T-GGT-T-CT-CG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GC----AAGGGTA-GGGATTTTAATTT--TT--G-TTT-TTAA-ATCAA--A-C-GATA-T--A-AA-ACCTGAAA-T---A-AT-TCAA-C-ATGA--TTACA-AAATGT-A-----------ATTTCA-AGG-GC-ATC----ACTT--G-TA-TG--TGTA-AA--TGAC-T---A-GT--A---AA-ATAAAATTGGTGG----AC-TATG-AA-TAA-ATGTTTGTTT-GA---G-TATATAATTACCTTCATTG-G-T-AAGGCGTGACCCTACAACA-ATCAATTTA-A-----A--TA-CT--G--CTGA-TT--CCCCACC-TAAAAGTG-A--TGAAT--AAGAAAAACT-ACT--CCT-TTGA-C---A--T-TCATTTAA-T-G-TCT-A----AATTATC--TT-T-CC---C-AA-TT-A---TA-CG-ACTAT---T-TCATTGT-ATTAATAAAAC---CAGGTCC-ATA-AATTTT-AAA-TTGTTATT-CATTAAA---TCGTG-AT--GAAAACCATCAC-AGCA-TTGAA-AGC-GG-TATTT--AA-A-CAT-AGTG-T-T--GAGCCTGGA-A-T-TTCCTC-----------------------GCA-T-T-AATA---AGAAT-A-A--TG-A-AAA-T-C-A--------TC-ATA-TTT-A----AAT--TGCACCCCTTTA-T---GAGAAA-T--A-----------------CTAA---ACA-----ACAT--GAGT-TTCC-TT-CAAGCAA-TAACGGCGTGATACCAAGA----A-AATA---C-AAT-ATT-GA--TGAGGGG-TA-CT-CTTG---AGCCTC-CAAACTA-C----TC-AT-TCA-GAG-T-----AA-AGT-AGCG--T-CAGA--GAG-A--TAACT-CTTACA-TTTTTC-GGGATA---ACTC-TTGCGATATTTAT-GATCGA--T--CGCCGC
gi|10 : CCACATAAAA-TAA-AT-TGT-C-T-GGTCT-CT-CG-GGGAA---A-TG-A-TT-----GA-AAAGT-G-GGTAGG-TAGTCAAG--A-GG--GTTTAT-TT-TT-TT---TGTTTCTT---ATTT-CT--G-A-AGA-GC----GA-GGTA-GGAGATTTATTTTGGTT--G-TTT-TAAA-ATCAA--A-CGGATA-T--A-AT-ACCTG-AA-T---ATGT-TCAA-C-ATAT--TTACG-AAA-GT-AAT----------CTTCA-AGG-GCAATC-GACACTT--G-TA-TATGCACA-GA--TGA--TC--A-GT--A---AAT-AAAAACT-GTTG----AC-TA---AA-ATA-ATGTTTTTTG-GG---ATTGCA--------------A-G-T-A--G-GTGACCC-ACAA-G-ATgc
gi|11 : gA----CAT-AA-A-TTGCA-A-C-GG-TA-----AA-C-C-C-A-TA-T-T--GAGGCTGGA-ATT----CTC-TGCTT--------AT---------A-T-A-AAAA---AA-AT-A-A--TG-A-AAG-T-ACA--------TC-ATA-TTA-A----AAT---GCA-CC--TTA-T---GAGAAACT--A-----------------CTAA-C--C------CAAT--GA-T-TTC---TCCAA-----TA--GGC---ATA-----A----ACAA-A---TAAATCAAT-CG--TGA--GGATA--T-CTT----AT-C-C-CAAACTA-C----TC-A--TCACGAT-T-----AA-AGT-AGCG--T-CA-A-GGAGCA--TA--T-CTTACATTTTTCG-AGAATA---A--C-TTGC---ATTCAT-GATCGA--TGGCGCCGCtcgaaa
gi|12 : ttgtgacAA---GG-ATTA-AGGTG-AGAAG-TCA-A--------TC-AT--TTT-CTCGTAATCGTGCA-CC-TTTA-T---GAGGAG-T--ATTTGTGCCAGTAATTTACTAAGC-AC------CAAT--AT-T-TTCC-TTC--AGT-A-TA--G-C---ATT-----G----T-AA-----C-AACTA-T-AT--TGA--GT-TATCT-CT-G---AG-CTC-CAA--TG-C----TC-A--TCACGAG-T-----GACAGTGAGC---T-CAGAGGGAG-A--TATCT-TTTATATTCTTTC-GGG-TA---ACTG-AT-----ATTTAT-GATCGA--T-GCGg
gi|13 : tctgtcatattattAA---GG-ATTA-AGGTG-AGAAG-TCA-A--------TC-AT--TTT-CTCGTAATCGTGCA-CC-TTTA-T---GAGGAG-T--ATTTGTGCCAGTAATTTACTAAGC-AC------CAAT--AT-T-TTCC-TTC--AGT-A-TA--G-C---ATT-----G----T-AA-----C-AACTA-T-AT--TGA--GT-TATCT-CT-G---AG-CTC-CAA--TG-C----TC-A--TCACGAG-T-----GACAGTGAGC---T-CAGAGGGAG-A--TATCT-TTTATATTCTTTC-GGG-TA---ACTG-AT-----ATTTAT-GATCGA--T-GCGgcag
gi|14 : tctgtcatattattG-ATAACTC-ACAC-A-ATC-----A-A-----A--TA-CT-------AA-TC--CTCCAAC-TAA--GTGAAAATGAAT--AAG--AA--T-A-T--CCT-GTGA-C---A--T-T-A-TT-A-T-G-TCGAA----A---ATA--TT-T-CC---CAAA-TT-A---TA-GA-AATAT---TATCAATGT-ATTTAT-AAAC---AA-GT----TA-CA-TTT-AAA-TTGTTgcag
gi|15 : aaatgtgttttcttggataaacatttaaatcatttgtaaaaagcggaATAAAA--AA-ATATGT-C-T-G-T-T-CT-CG-GAAA-------G-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GTTGTTAAT-TT-TT---TG-TT-TT---ATTTC------A-AGA-G-----GAGGGT--GGGATTTTATTTT--TTTGG-TTT-TTAA---TAA--A-C-GATA-T--A-AA-AACTGAAA-T---G-AT-TCAA-----AT--TTACG--AATGT-GAT-------T-
gi|16 : ggcaCCACATAAAAATAATAT-TGTTC-T-TGG-T-CT-CGTGGCAA---TGTGCA-TTTT--GAA-AA-GTGG---TAGGATTG----G-TA-GT--GGTTTT-AT-TT-TTGATTATTT-AT---ATATCCC--ATA-AGAAGC----GAGGGTA-GGG-TTTTATTTT--TT--GATTTATTAA-tcaggac
gi|17 : g-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-CTCGATC-A--TCACG------------AGT-AGCG--T-CTGA-caccatagtcataactattgtataaaaacct
gi|18 : TAAAA-TAA-AT-TAT-C-T-GGT-T-CT-CA-GAAA-----------TTTT--GAA-AAAGTGT-G-TAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---ttatgttgtgtggatgaaagttcggttttaagtcttaaatt
gi|19 : ccA-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA----------------------GATCGA--T-GCGTGGCatt
gi|2 : tccgatatagtgaatgtCCACATAAAA-TAA-AT-TGT-C-T-GGT-T-CTTCG-GGAAA---T-TG-A-TTTT--GAA-AAAGTGG-GGTAGG-TAG----G-TA-GG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCC--A-A-AGA-GCCTAATAGGGTA--GGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GATA-T--A-AATACCTG-AA-TAGGG-AT-TCAA-C-ATATACATACG-AAATGTAAATTGTGACGT-ATGTCATGGG-GCAATC-AA-ACTTG-G-TA-TGC-CGTA-GAGGTGACGTC--AGGT--A---AATAGAAGATT-GTTGTTTTAC-TC---AA-TAA-ATGTTTGTTG-GG---A-TATA--------------G-G-T-AAGG-GTGACCC-ACAA-A-ATC-----A-A-----A---A-CT-CTC-CTGATTT--CCCCACCGTAAAAGTGAA--TGAAT--AAGAAAA--TAA-T--CCT-TTGA-C---A--T-T-ATTTAA-T-G-TCT-A----A---ATT--TT-T-CC---C--A-TT-C---TA-CGCAGTAT---T-TCA-TGT-ATTAA--AAA----CA-GTCCAATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TGAAT--GAAAA----CAT-AACA-TTGAA-A-C-GG-TA-----AA-C-CAT-A-TGTT-T--GAG-CTGGA-ATT-TTCCTC-TGCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AG-AT-A-A--TG-A-AAG-T-A-A--------TC-A-A-TTT-A----AAT--TGCA-CCCTTTA-T----AGAAA-T--A-----------------CTAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAGA-A-TA--GGC---ATA-----A----A-AA-C---C-AACTACTGGA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-C----TC-A--TCA-GAG-T-----GA-AGT-AGCG--T-CAGA-GGAG-AATTAACT-CTTAAATTTTTTC-GGGATA---ACTCTTTGC---AAATAT-GATCGA--T-GTGCGGCgg
gi|20 : -AGCG--T--AGA-GGAG-A--CAACTGCTTACATTTTTTC--GGAT----ACTC-TTGC---A-AT-T-GATT-A--TAGCGCG
gi|22 : cCCACCTAAAA-TAA-TT-TCT-C-T-GGT-T-CT-TG-GACAA---C-TG-A-TTTT--GAA-tc
gi|23 : g-TGT-C-TTGGT-T-CT-CG-GGAAAC--T-TG-ATTTTT--GAA-AAA---G-GGTAGG-T
gi|3 : AAA-TAA--T-TGT-C-T-GGT-T-CT-CG-GGAAAATAT-GA-A-TTTT--GAA-AAAGTGG-G-TAGG-TAG----GATAAGG--GTTTTT-AT-TT-TT---TGTTT-TT---ATTTCCCCCA-A-AGA-GC-----AGGGTA-GGGATTTTAATTT--TT--G-TTT-TTAA-ATCAATGA-C-GATAAT--ACAG-ATC----A-C-----ATATCAA-CCATGA--TTACA-AAATGT-AAT-------T----TCA-AGG----AT--AA-ACTT--G-TA-TGT--GTA-AA--TGAC-TA--G-AT--ACAAAATAAAAATTG-GTGG----AC-TATGAAA-TAA-ATGTTTGTTG-AG---A-TATATAATTACATTCATTG-G-T-AAGG-GTGACCC-ACAA-C-ATC-----A-ATTTAAA--TA-CT-GC--CTGA-TT--CCCCACC-TAA--GTGA---TGAAT--AAGAAAA--T-ACT--CCT-TTGA-C---A--T-TCATTT-A-TTG-TCT-A----A---ATGATTT-T-CC---C-AA-TT-A---TA-CG-AGTAT---T-TCATTGT-ATTAAT-AAAC---CAGGTCC-ATA-AA-TTTAAAA-TTGTTATT-CA-TAAA---TCGTG-AT--GACCAT---CATCAGCA-TTGAA-AGC-GG-TAATTTTAA-A-CATAA-TG-T-T--GAG-CTGGA-AAT-TT-CTC-TG--------------------GCA-T-T-AATA---AGAAT-A-A--TGAA-AAG-T---A--------TC-ATA-TTT-A----AAT--TGCACCCCTTTA-T---GAGAAA-T--A-----------------CTAA---ACA-----ACAT--GAGT-TTCC-TT-CAAG--A-TA--GGC---ATA-----A----A-GA-AAATC-AATATTT-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTACC----TC-A--TTTCAGG-T-----AA-AGT--GCG--TCCAGA--GAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGCAT-ATTTATGGATCGA--T-GCGCG
gi|4 : cactAATGGAGGTA---TAG----T-TA-AGAGGTTTTT-ATATT-TC---TGTTT-TTTTAATTGTCC--A-AGAGAAGC----AAGGGTACGGGATTTAATTTT--T---G-TTT-TTAA-ATCAA--AAC-GA-A-T--A-AA-ACTGA-AA-A---A-AT-TCAA-C-ATAT--TTACG-AA-T-C-AGG-------T-ATTTCA-AGG-GC-ATC-AA--CTT--G-TA-T---TGTA--A--TGAC-TC--A-GT--A---A-TAAAA--TT-GTTG----ACATA---AA-TTA-ATGTTTGT---GG---A-TA----------------G-G-T-AAGG-GTGACCC-ACAA-ATATC-----A-A--------TA-CT-CTAGCTGA-TT--CCCCACC-TAAAAGTGA---TAGAT--AAGAAAA--T-A-TTGCTT-TCGA-CTTAA--T-T-ATA--A-T-G-T-T-C----A---ATA--TT-T-CCACCC-AA-TT-AA--TAACA-AGTATATAT-TCAT-GT-ATTA-T-AAAC---AA-GTC--ATACAA-TTT-AAAATTGT-ATT-CA--AAA---TC-T--AT--GAAAA----CA-----A-T--AA-A-C-AT-TG-----AA-C-------TG-TCT--GAGACTGGA-ATA-TTCCTCCTGCTTT-ACAAAAATCCATCT-GCAAT-T-AAAA---AA-ATTG-A--TG-A-A-G-T-A-A--------AC-ATA-TTT-G----AAT--TGCA-CCCTTTA-T---GAGAAA-T--A-----------------CAAA-C-ACA-----CAAT--GA-T-TTCC-TTCCAAG--A-TA--GGC---ATA-----A----A-AA-AAAAC-AAT-ACT-GA--TGA--GG-TA-CT-CTTG---AG-CTC-CAAACTA-C----TC-A--TCACAAG-T-----AA-AGT-AGCG--T-CAGA-GAAG-A--TAACG-CTTACATTTTTTC-GGGATA---AGTC-TTGCAT-ATTTAT-GATCGA--T-GCGTAGCcag
gi|5 : atCCACATAAAA-TAA-AT-TGT-CCT-GGT-TTCT-CG-GGAAA---T-TG-A-TTTTTTGAA-AAAGTGG-G-TAGG-TAG----G-TA-GG--GATTTT-AT-TT-TT---TGTTT-TT---Ag
gi|5 : GGTA-GGGATTTTATTTT--TT--G-TTT-TTAA-ATCAA--A-C-GATA-TCTA-AA-ACCTG-AAAT---G-AT-TCAA-C-ATAT--TTACG-AAAT-T-AAT-------T----TCA-AGG-GC-ATC-AA--CTT--G-TA-TGC-CACA-GA--TGAC-TC--A-GT--A---AATAAA---CT-GTTG----AC-TA---AAATAA-ATGTTTGTTG-GGTAGG-TACA--------------G---T-AAGG-GTGACCC-ACCA-A-TTC-----A-A--------TA-CT-CT---TGA-TT--CCCCACC-TAAAAGTGA---TGAAT--AAGAA----T-A-T--CCT-TTGA-C---A--T-T-ATTT-A-T-GGTCT-A----A---ATA--TT-TTCC---C-AA-TT-A---TA-CG-AGT-----T-TCATTGT-ATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TT-TTATTTCA-TAAAATCTC-TG-AT--GAAA-----CAT-AACA-TTGAA-A-C-GG-TA-----AAACGCAT-AATG-T-T--GAG-CTGGA-ATT-T--CTC-TTCTTT-A--AAAATCC-TCT-GCA-T-T-AAAA---AA-AT-A-A--TG-A-AAG-T-A-ATCATATTTTC-ATA-TTT-A----AAT--TG---TCCCTTA-T---GAGAAA-T--A-----------------CTAA-C-ACA------AATGCGA---TTCC-TT-CAAG--A-TA--GGC---ATA-----A----A-AATA---C-AATACTT-GA--TGA--GGTTA-CTACTTG---AG-CTCACAAACTA-C----TC-AT-TCACG------------AGT-AGCG--T-CA-A-GGAG-A--TAACT-CTTACATTTTTTC-GGGATA---ACTC-TTGC---A-ATAT-GATCGA--T-GCaatcaaacgatatctaaaacctgaaatgattcaacatatttacgaaattaatttcaagggcatcaacttgtatgccacagatgactcagtaaataaactgttgactaaaataaatgtttgttgggtaggtacagtaagggtgacccaccaattcaatactcttgattccccacctaaaagtgatgaataagaatatcctttgacattatttatggtctaaatattttcccaattatacgagtttcattgtattaataaaccagtccataaatttaaattttatttcataaaatctctgatgaaacataacattgaaacggtaaaacgcataatgttgagctggaatttctcttctttaaaaatcctctgcattaaaaaaataatgaaagtaatcatattttcatatttaaattgtcccttatgagaaatactaacacaaatgcgattccttcaagataggcataaaaatacaatacttgatgaggttactacttgagctcacaaactactcattcacgagtagcgtcaaggagataactcttacattttttcgggataactcttgcaatatgatcgatgcagc
gi|6 : ccacataaaataaattgtcctggtttctcgggaaattgattttttgaaaaagtgggtaggtaCCACATAAAA-TAA--T-TGT-C-T-GGT-T-CT--G-GGAAA---T-TG-A-TTTT--GAAGAAAGT-G-GGTAGG-TAG----G-TA-GT--GGTTTT-AT-TTCTT---TGTTT-TT---ATTTCCC--A-A-AGA-GC----GAGGGTA-GGGA-TTTATTTT--TT--GTTTT-TTAATATC----A-C-GATA-T--A-AA-A--TGAAA-T---G--T-TCAATC-ATAT--TTACG-GAATGT---T-------TAATTTCAGAGGTGC-ATC-GA-AGTT--GCTA-TG--CGTA-GA--TGAC-TG--A-GT-------AT--AAAATT-GTTG----AC-TA---AA-T-A-ATGTTTGTTG-GG------ATA--------------G-GTT-AAGG-G-GACCC-AC-A-A-ATC-----A-A-----GATTA-CTATT--CCGA-TCGATCCCACC-TAAATGTG-A--TG-AT--AAGAAAA--T-A-T--ACT-TTGA-C---A--T-T-ATCT-ATT-C-CCT-AAAATA---ATT--TT-C-CC---C-AA-TT-A---TA-CG-AGTAA---T-TCATTGT-ATTTAT-TAAC---CA-GTCC-A-A-AA-TTT-AAA-TTGTT-TT------AA---T--TG-AT--G-AAA----CATAAACAGTTGAA-A-CGGG-TA-----AA-C-----A-TGAT-T--TAG-CTTGG-ATTATCCCTC-TGCTTTAA--AAAATTT-TCTGGCA-T-T-AAAA---A--AT-A-A--TG-A-AAG-T-A-A--------TA-A-A-TTTAA----AAT--TGCA-CCCTTTAGT---GA-AAA-T--A-----------------CT-A-C-A-A-----CAA---GA-T-TTCC-TTCCAAG--AGTA---AC---ATA-----A----A-GA-A---C-AGATATG-GA--TGG--CG-TA-AT-CTTG---AG-CTC-CAAACTA-C----TCAA--TCACagc
gi|7 : -TCAA-C-ATAT--TTACGGAAATGT-----------C-ATTTCA-AGG-G--ATCCAA-ACTCTCG-TACTGCTCGCAAGA--TGAC-TCTCA-GTTAG---AATCATAAATT-GTTG----AC-TACC-AA-TAACATGTTT-TTGCGG---C-GATA--------------GTA-C-ATGG-CTGGACC-ACAA-A-ATC-----ACA-----A--TAACT-CT--C--A-TT--GCC-ACC-TAAAAGTAAA--TGAATTTAAGAAAA--TTA-T--CCTCTTGA-C---AGGTAT-ATTT-A-T-G-TCT-A----A---AGA--TTAT-CC---C-AA-TTTA---TA-CG-AGTAT---T-TCATTGTCATTAAT-AAATGTTCA-GTC--ATA-AA-TTT-AAA-TTGTT-TT-CA-TAAA---CA-TG-AT--GAA------CAT-A-CA-TTGAACG-C-GGATT-----AA-C-CAT-A-TG-T-TTTGAG-CTGGATAAT-TTCCTC-TGCTTTTA--AAAATCC-TCT-GCA-TCT-AAAATATAC-AT-ATA--TG-A-AAGCT-A-A--------TC-ATA-TTC-T----AAT--TGC---TCTTTA-T---GGACCA-TTAA-----------------CTAA-CCACA-----CAAT--GA-T-TTCCATTCCAAG----TA--G-C---ATA-----A----A-AA-AAA-C-AATGACT-GA--TGA--GG-TA-CT-CTTG---AG-CCC-AAAACT--C----TC-AAGTC-CGAGATA----GA-AGT-AGCGGTT-CAG
gi|8 : AGG-GTGACCC-ACAA-A-ATC-----A-A-----A--TA----CT--CCGA-TT--C
gi|8 : T--CCCCACC-TAAG-GTGA---TGAAT--AAGAAAA--T-A-T--ACT-T----C---A--T-T-ATCT-A-T-GTTCT-A----AAATATT--TT-C-CC---C-AA--T-A---TA-CG-AGTA----T-TCATTGTGATTAAT-AAAC---CA-GTCC-ATA-AA-TTT-AAA-TTGTTATT-CA-TAAA---TC-TG-ATTGGAAAT----TA--AACA-TTGAA-A-C-GG-TA-----AA-C-CAT-A-TG-T-T--GAG-CTGGA-A-T-TTCTCC-TGCTTC-A--AAAATTT-TCT-GCA-T-TAAAAA---AA-AT-A-A--TG-A-AAG-T-A-A--------TCAATATTTT-A----AAT--TGCA-CCCTTTA-TTGAGAGAAA-T--------------------CTAA-C-ACAAACAGCAAT--GA-GATTCC-TT-CAAG--A-TA--AGC---ATA-----A----A-AA-A-----AATCAAT-GATGTGAT-GG-TA-CT-CTTG---AG-CTC-CAAACTA-C----TC-A--TCACTCG-TTTAAAGT-AGT-AGCG--T-CAGA-GGAG-A--TAACT-CTTACATTTTTTCAGAGATAAGTACT--TTGC---A-ATAG-GATCGATGT-GCGCGGCgannnnnnnnnnnnnnnnnnnnnnnnntccacgcgatccccacctaaggtgatgaataagaaaatatacttcattatctatgttctaaaatattttccccaatatacgagtattcattgtgattaataaaccagtccataaatttaaattgttattcataaatctgattggaaattaaacattgaaacggtaaaccatatgttgagctggaatttctcctgcttcaaaaattttctgcattaaaaaaaataatgaaagtaatcaatattttaaattgcaccctttattgagagaaatctaacacaaacagcaatgagattccttcaagataagcataaaaaaaatcaatgatgtgatggtactcttgagctccaaactactcatcactcgtttaaagtagtagcgtcagaggagataactcttacattttttcagagataagtactttgcaataggatcgatgtgcgcggc
gi|9 : agggtgacccacaaaatcaaatactccgattcgannnnnnnnnnnnnnnnnnnnnnnnntccacgcgaTTGTTG-GGGATA-TATAAATTCATT------G-G-TTAAGG-GTGACCC-ACAA-A--TC-----A-A-----A--TA-CT-CT----GA-TT--CCC-ACC-TAAA-GTGA---TGAAT--ACTAAAA--T-A-T--TCT-TTGAAC---A--T-T-ATTT-A-T-G-TCT-A----A---ATA--TT-T-CC---C-AATTT-ATTTTA-CG-AGTA----T-TCATTGT-ATTTAT-AAAC---CT-G-AC-ATA-AA--TT-AAA-TTGGTATT-----------------------AAA----CAT-AACA-TTGAC-A-C-AG-TAT----AA-C-CAC-A-TG-T-T--GAG-CTGGA-A-T-TTCCTC-TGCTTTAA--AAAAT--------CA-T-A-ATAA---AG--T-A-T--T-----AG-T-A-A--------TC-ATA-TTT------AAT--TGC--CCTTTTATT---GAGAAA----A-----------------CAAA-C-ACA-----CAAT--GA-T-TT-C-TTCC-AG--A-TG--AGCT--ATA-----AAACTA-AA-A---C-AATTACT-GA--TGA--GG-TA-CT-CTTGTTTA--CTC-CAAACTT-A----TC-A--TC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTTTGTGAATGTTGTTTTTTCCCAATTTTCCTAAAACAACGGTGATTTTCCCAATTT