lowQualScore : 6 555 555 2 444 2 3 555 3 3 3 7777 77 555 3
lowQualScore : . ... ... . ... . . ... . . . .... .. ... .
lowQualScore : 0 444 444 9 777 9 1 444 1 1 3 1111 99 888 3
consensus : NNNTGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACC
Reference ( gi|9 ) : ACTTAACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACC
gi|7 : TGACTAG-CAA---TT---CCCCTGC---CT---GAGT-G-T---C-CAAT-AA--G----TGAT-TT---TA-CATTGAACC
gi|18 : tataaatgaaTGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-
gi|5 : ACTAAGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-TATTGAACC
gi|16 : tataatatacagatACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-Acaggg
gi|10 : taccACTAGGCAA---AT---TACCCGC-TGCT---GAGT-G-T---T-CAAC-AA-T-----TGA-------TACCATTGAACC
gi|14 : accACTAGGCAA---TT---CAGCCAC-TGCT---GATT-T-T---C-CAAG-AA-TG--------------TA-CATTGAACCcagg
gi|8 : tACTAGGCAA---TT---CACCCAC-TGCT---GAGTCGTT---C-CAAT-AA--G-----GA--TT---TA-ca
gi|15 : cACTAGGCAA---TT---CACCCGC-TGCT---GAaactttgcactcagg
gi|11 : atatatacagtatatCTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---T-CAAT-AA-TG----TGA--TT---TA-CATTGAACC
gi|13 : TAGGCAA---TT---CACCCGC-TGCT---GAGC-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACCaa
gi|12 : TAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAGT-AA-TG----TGA--TT---TA-CATTGAACCca
gi|6 : AGGCAAGTCTC---CACCCGC-TGCT---GAGT-G-T-----CAATAAA-TGCTTCTGAATTT---TA-CATTGAACCca
gi|4 : GCAA---TTTCACGCCCGCATGCTTTTGAGT-G-TGGGCACAAT-AAATG----TGA--TTGTACA-CATTGAACCcagggg
gi|17 : CGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-tcaggggagggg
gi|2 : CT---GACT-A-C---C-CAAT-AA-TG----TGA--TC---TA-CA-TGAAC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): ATTCACCCGCTGCTGGATAGCGGTTAAATTAATCAAGAGTCAGGAACATACTCTGCTCCTTGTCAATAAGTGAGTGATTATCCTTGAACTCTTGGTTCTCCTTATTTTGAACCCAG
Unaligned ( gi|3 ): CAATCCACCAGCTGCTGGATAGCGTTAAATATTAGAGTCAACAACTCGGACTGTCCAATGTGTTCTTCATGAACTTTAATTTGAACCCAGG
Alignments
lowQualScore : 555 555 2 444 2 2 555 2 2 3 6666 77 555 3
lowQualScore : ... ... . ... . . ... . . . .... .. ... .
lowQualScore : 000 000 7 444 7 9 000 9 9 1 5555 33 444 1
consensus : NNNTGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACC
Reference ( family-810 ) : NNNTGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACC
gi|10 : ACTAGGCAA---AT---TACCCGC-TGCT---GAGT-G-T---T-CAAC-AA-T-----TGA-------TACCATTGAACC
gi|11 : accCTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---T-CAAT-AA-TG----TGA--TT---TA-CATTGAACCcagg
gi|12 : TAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAGT-AA-TG----TGA--TT---TA-CATTGAACCaa
gi|13 : TAGGCAA---TT---CACCCGC-TGCT---GAGC-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACCca
gi|14 : ACTAGGCAA---TT---CAGCCAC-TGCT---GATT-T-T---C-CAAG-AA-TG--------------TA-CATTGAACCca
gi|15 : tACTAGGCAA---TT---CACCCGC-TGCT---GAca
gi|16 : atatatacagtatatACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-A
gi|17 : taccCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-
gi|18 : TGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-
gi|2 : CT---GACT-A-C---C-CAAT-AA-TG----TGA--TC---TA-CA-TGAAC
gi|4 : aattcatccgctgctggatagcgttaaattatcagggtcaccaaatGCAA---TTTCACGCCCGCATGCTTTTGAGT-G-TGGGCACAAT-AAATG----TGA--TTGTACA-CATTGAACCattattttgaaccca
gi|5 : ACTAAGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-TATTGAACCtcaggggagggg
gi|6 : tataatatacagatAGGCAAGTCTC---CACCCGC-TGCT---GAGT-G-T-----CAATAAA-TGCTTCTGAATTT---TA-CATTGAACCcaggg
gi|7 : TGACTAG-CAA---TT---CCCCTGC---CT---GAGT-G-T---C-CAAT-AA--G----TGAT-TT---TA-CATTGAACCcagggg
gi|8 : tataaatgaaACTAGGCAA---TT---CACCCAC-TGCT---GAGTCGTT---C-CAAT-AA--G-----GA--TT---TA-
gi|9 : cTAACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACCaactttgcactcagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ATTCACCCGCTGCTGGATAGCGGTTAAATTAATCAAGAGTCAGGAACATACTCTGCTCCTTGTCAATAAGTGAGTGATTATCCTTGAACTCTTGGTTCTCCTTATTTTGAACCCAG
Unaligned ( gi|3 ): CAATCCACCAGCTGCTGGATAGCGTTAAATATTAGAGTCAACAACTCGGACTGTCCAATGTGTTCTTCATGAACTTTAATTTGAACCCAGG
Alignments
lowQualScore : 555 555 2 444 2 2 555 2 2 3 6666 77 555 3
lowQualScore : ... ... . ... . . ... . . . .... .. ... .
lowQualScore : 000 000 7 444 7 9 000 9 9 1 5555 33 444 1
consensus : NNNTGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACC
Reference ( family-810 ) : NNNTGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACC
gi|10 : ACTAGGCAA---AT---TACCCGC-TGCT---GAGT-G-T---T-CAAC-AA-T-----TGA-------TACCATTGAACC
gi|11 : accCTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---T-CAAT-AA-TG----TGA--TT---TA-CATTGAACCcagg
gi|12 : TAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAGT-AA-TG----TGA--TT---TA-CATTGAACCaa
gi|13 : TAGGCAA---TT---CACCCGC-TGCT---GAGC-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACCca
gi|14 : ACTAGGCAA---TT---CAGCCAC-TGCT---GATT-T-T---C-CAAG-AA-TG--------------TA-CATTGAACCca
gi|15 : tACTAGGCAA---TT---CACCCGC-TGCT---GAca
gi|16 : atatatacagtatatACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-A
gi|17 : taccCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-
gi|18 : TGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-
gi|2 : CT---GACT-A-C---C-CAAT-AA-TG----TGA--TC---TA-CA-TGAAC
gi|4 : aattcatccgctgctggatagcgttaaattatcagggtcaccaaatGCAA---TTTCACGCCCGCATGCTTTTGAGT-G-TGGGCACAAT-AAATG----TGA--TTGTACA-CATTGAACCattattttgaaccca
gi|5 : ACTAAGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-TATTGAACCtcaggggagggg
gi|6 : tataatatacagatAGGCAAGTCTC---CACCCGC-TGCT---GAGT-G-T-----CAATAAA-TGCTTCTGAATTT---TA-CATTGAACCcaggg
gi|7 : TGACTAG-CAA---TT---CCCCTGC---CT---GAGT-G-T---C-CAAT-AA--G----TGAT-TT---TA-CATTGAACCcagggg
gi|8 : tataaatgaaACTAGGCAA---TT---CACCCAC-TGCT---GAGTCGTT---C-CAAT-AA--G-----GA--TT---TA-
gi|9 : cTAACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACCaactttgcactcagg
blockSeqs : GTC TCA A TTT C T GGG A A A CTTC AT GTA .
blockSeqs : . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons :
originalCons : NNNTGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACC
finalCons : NNNTGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ATTCACCCGCTGCTGGATAGCGGTTAAATTAATCAAGAGTCAGGAACATACTCTGCTCCTTGTCAATAAGTGAGTGATTATCCTTGAACTCTTGGTTCTCCTTATTTTGAACCCAG
Unaligned ( gi|3 ): CAATCCACCAGCTGCTGGATAGCGTTAAATATTAGAGTCAACAACTCGGACTGTCCAATGTGTTCTTCATGAACTTTAATTTGAACCCAGG
Alignments
lowQualScore : 555 555 2 444 2 2 555 2 2 3 6666 77 555 3
lowQualScore : ... ... . ... . . ... . . . .... .. ... .
lowQualScore : 000 000 7 444 7 9 000 9 9 1 5555 33 444 1
consensus : NNNTGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACC
Reference ( family-810 ) : NNNTGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACC
gi|10 : ACTAGGCAA---AT---TACCCGC-TGCT---GAGT-G-T---T-CAAC-AA-T-----TGA-------TACCATTGAACC
gi|11 : accCTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---T-CAAT-AA-TG----TGA--TT---TA-CATTGAACCcagg
gi|12 : TAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAGT-AA-TG----TGA--TT---TA-CATTGAACCaa
gi|13 : TAGGCAA---TT---CACCCGC-TGCT---GAGC-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACCca
gi|14 : ACTAGGCAA---TT---CAGCCAC-TGCT---GATT-T-T---C-CAAG-AA-TG--------------TA-CATTGAACCca
gi|15 : tACTAGGCAA---TT---CACCCGC-TGCT---GAca
gi|16 : atatatacagtatatACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-A
gi|17 : taccCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-
gi|18 : TGACTAGGCAA---TT---CACCCGC-TGCT---GAGT-
gi|2 : CT---GACT-A-C---C-CAAT-AA-TG----TGA--TC---TA-CA-TGAAC
gi|4 : aattcatccgctgctggatagcgttaaattatcagggtcaccaaatGCAA---TTTCACGCCCGCATGCTTTTGAGT-G-TGGGCACAAT-AAATG----TGA--TTGTACA-CATTGAACCattattttgaaccca
gi|5 : ACTAAGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-TATTGAACCtcaggggagggg
gi|6 : tataatatacagatAGGCAAGTCTC---CACCCGC-TGCT---GAGT-G-T-----CAATAAA-TGCTTCTGAATTT---TA-CATTGAACCcaggg
gi|7 : TGACTAG-CAA---TT---CCCCTGC---CT---GAGT-G-T---C-CAAT-AA--G----TGAT-TT---TA-CATTGAACCcagggg
gi|8 : tataaatgaaACTAGGCAA---TT---CACCCAC-TGCT---GAGTCGTT---C-CAAT-AA--G-----GA--TT---TA-
gi|9 : cTAACTAGGCAA---TT---CACCCGC-TGCT---GAGT-G-T---C-CAAT-AA-TG----TGA--TT---TA-CATTGAACCaactttgcactcagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ATTCACCCGCTGCTGGATAGCGGTTAAATTAATCAAGAGTCAGGAACATACTCTGCTCCTTGTCAATAAGTGAGTGATTATCCTTGAACTCTTGGTTCTCCTTATTTTGAACCCAG
Unaligned ( gi|3 ): CAATCCACCAGCTGCTGGATAGCGTTAAATATTAGAGTCAACAACTCGGACTGTCCAATGTGTTCTTCATGAACTTTAATTTGAACCCAGG