lowQualScore : 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 4 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 3333 6666666666666666666666666666666666666666666666 222222222222222222 22222222222222222 888888888888888888888888888888 2222 11111 2222 2222 2 1111 1111111 111111111 11 333333333333333333333 1 22 333 22 1111 111 3333333333333333333333 11111 11 11 44 111 11 11 111 11 2222 22222222222 2
lowQualScore : 0 7 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 8 0000 5 77 7777777777777777777777777777777777777777777777 4 333333333333333333 66 3 66 4 66 99999 1 1 5 88888888888888888 55 9 5 444444444444444444444444444444 88 4 777 7777 0 777 4 4 3333 4 4 0 0 22222 2 99 4444 3333 8 8 5 5 66 4 66 4 4 8 4 4 2222 8888 4 3333333 4 4 55 666666666 888 22 888888888888888888888 4 4 5 44 999 4 444 5 5 5 11 6666 77 77 777 5 0 5555555555555555555555 77 77777 11 5 11 666 77 6 6 8 8 66 8 00 3 444 2 3 55 11 8 99 222 55 1111 3 111 1 3 2 2 88888888888 2
lowQualScore : . . .............................................................................................................................. . . .... . .. .............................................. . .................. .. . .. . .. ..... . . . ................. .. . . .............................. .. . ... .... . ... . . .... . . . . ..... . .. .... .... . . . . .. . .. . . . . . .... .... . ....... . . .. ......... ... .. ..................... . . . .. ... . ... . . . .. .... .. .. ... . . ...................... .. ..... .. . .. ... .. . . . . .. . .. . ... . . .. .. . .. ... .. .... . ... . . . . ........... .
lowQualScore : 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 4444 0 22 3333333333333333333333333333333333333333333333 4 000000000000000000 11 6 11 4 33 33333 7 3 0 22222222222222222 22 4 0 888888888888888888888888888888 66 0 000 7777 8 888 6 4 9999 4 4 1 1 11111 5 88 0000 7777 0 1 0 0 11 4 11 4 4 9 4 0 5555 5555 0 0000000 0 0 55 000000000 777 22 000000000000000000000 4 4 0 55 666 4 666 0 0 1 11 7777 99 99 777 0 4 4444444444444444444444 66 99999 33 7 33 000 77 7 7 0 0 44 0 44 0 000 8 2 66 00 0 00 000 00 2222 2 222 2 2 5 2 22222222222 0
consensus : NNNTAATTA-CAAAATCATCATAGTGGTGTGGAATCAGTGATATGCAACATGATGTCAT-TGCTTGGTAATGTGTAGTCAA-TTAATTGCCCAAAGTTATTTCTG-----T-TAG---AGTAATTTA---TTTA--TAT--TGTAGGGTTACAG-GTG---NCTCTC-GATAA-CTC--------------GAA-CT---T-C-----GATCT-T---GAA--GTT-C-C--GGTCT--C------T--CGAAGT--GA-A-GTC-NC--GGTCCCGATTT-TTTTCT---C----T-AT-A--TAA-GTAAGC-A-A-T---TTA--T-CT-CGATCTC---TCGAACGTTCGA-T---CTCTCGAAAGTTCTC---GATCTCT-CTCG-AAGT-G-AATTTGG-G---TCCCGT-AAAACAT-A-TTTCAT--TNTTTTTCAC-TCTCGATCT-CTCGAAG-T-GGTCG--TAG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGAA-GGCA---AATTAA-AAG-TTTAC-AAAGGGAACGCGCCGCC-CGCGCTGC--CTTTG-ATA---GGGT-G-GACACACAGGTAA-CGAT--TT--GATAAGTTTAAT-TGGTCAATTAT--CA-C-T-TCTCANC-C-TG-AGCA-ATGCG---TTGCN-TAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-G-AATAAAATTTATGAT-TGTTTTG--CCGA---GACNATGCAAGAGT--AT-A--TTTGAGACGATG-ATTTTGAGAAAAACGT----TTTGCGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCAGCA-CTAAA
Reference ( gi|2 ) : GTATAATTAACAAATTCA--ATAGT--TGTAAAATCC-TGA-A---AAGATGCTGAAATCTGCCT---AATTTG--GCCAACTTA------CAAA-TTATGTGTGGACAATGTAGCTCATTGATTTAGGATTTAAATATGATACAGGGTTACAG-GTG---CCTCTC-GATAA-CTC--------------GAA-CT---T-C-----GATC------AAA--GTT-C-C--GATCT--C------T--CGAAGT--GA-A-GTC-CC--GGTCCCGATTT-TTTTC----C----T-AT-A--TAA-GTAAGC-A-A-T---TTA--T-CT-TGATCTC---TCAAACGTTCGA-T---CTCTCGAAAGTTCTC---GATCTCT-CTCG-AAGT-G-AATTTGG-G---TCCCGT-AAAACAC-G-TTTCAT-GTTTTTTTCAC-TCTCGATCTTCTCGAAG-T-GGTCG--TAG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGAA-GACA---AATTAA-AAG-ATTAC-AAAGGGAACGCGCTGCC-CGC-CTGC--TTTTG-ATA--TGGGT-G-GACACACAGGT-A-CGAT--TT--GATAAGTTTAAT-TGGTCAATTAT--TT-C-T-TCTCAAC-C-TA-AGCA-ATGCG---TTGCA-TAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-G-AATAAAATTTATGAT-TGTTTTGTTCCAA---GGCCATGCAAGAGT--AT-A--TTTGAGACGATG-ATTTTGAAGAAAACGT----TTTGTGAAACATGTTTTGTAAAATACACATT----TA-T---CTCAGCATCTAAA
gi|1 : TAATTA-CAAAATCATCATAGTGGTGTGGAATCAGTGATATGCAACATGATGTCAT-TGCTTGGTAATGTGTAGTCAA-TTAATTGCCCAAAGTTATTTCTG-----T-TAG---AGTAATTTA---TTTA--TAT--TGTAGGG---CAG-GTG-----TCTC-GATAAACTCC-------------GAAGCT---T-C-----GATCTCTC--GAA--GTTAT-T--GCTCT--C------TGGCGAAGTAAGA-A-GTCGCC--GGTCCCGATTT-TTTCT----C----T-ATTAGTTAA-GTA-GC-A-AAG---TTAACT-CT-CGCTCT----TCGAACGTTCGA-TTCCCTCTC-AAATTTC------ATCTCT-T----AAGT-G-AATTTGG-G---TCCCGT-AAAACAT-A-TTTCA----TTGTTTCAC-TCTCGATCT--TCGAGG-T-GGTCG--CAGTAA--T--CACAAA-ACATCAACCAAAG-TGTCTAC-TTAT----TTCCAC----TTGGA-C-------TTACACTG-GACG--CCCGAAAAAAAGACGGG-GTGGGGCTGGCGAA-GGC----CATTTA-AAG-ATTATAAAAGGGAA--CGTCGCC-CGCGCTGC--TT-----TA--TAGGT-G-GACACAC-GGTAA-CGAT--TT--GATTGTTTTAAT-T-GTCAATTAT--CTACGT-TCTCACC-C-----GCACATGCGCCTCTGCA-TAGTTTTCTGA-A--ATAATC-GAC-ACGTGTTATAG-AATAAAATTTA-GAT-TGTTTTG--CCGA---GATTAT---AGAGCGAATGA--TTTGAGACAA---ATTTTGGGTAGAACAT----T---------ATGTTTTAAAAAATAAATGTTTTTCTA-TTTCCTCAGCGACTAAA
gi|15 : tgtGTTACAG-GTG---ACTC-C-GATAA-CTC--------------G-A-CTCGAT-C-----GTTC------GAA--GTT-CTC--GATCT--C------T--CG-AGT--GA-AGGTC-Ctagagacaaataaataatgaaactttcaaatacatcgtattttttttattttattatggacataaagttcgttagctcaatctattacgatgagattgaaggagaaaaaaa
gi|4 : aaTACAGCGTGACTTCTCTC-GATAA-CTCC-------------GAA-CT---T-C-----GATCTCTTC-GAA--GTT-CTC--GATCTTTC------T--CGAAGT--GACA-GTC-CC--GGTCCCGATGT-TTTTC----CTCTAT-AT-A--TAAGGTAAGCAA-A-T---TTACTT-CTCCGA-CTCGGTTCGAACGTTCGAGT---CTCTCG--AGTTCTC---GATCTC--CTCG-AAGT-GAAATTTGGCGGACTCCCGTAAAAACACTA-TTTCATAGTGTTTTTCAC-TC-------TCCCGAAG-TGGGTCGTTTAG-AGCTTAGTACAAATACATCAA-CAAAG-TGTCGAA-TTACAAAAATCCGC----TTGGAGC-------TTAC-CTGCGACGCCCCCGA---------GGGAGTGCAGTTGGCGAAGGAC----AATTAACAAG-TTTAC-AAAGGGAACGTGC-GCC-CGCGCTGC--CTTTGAATA---GGGTCGCGACACA-AGGTAA-CGAT--TTTAGAAAAGTTTAA--TGGTCAATTAT--CA-C-TATTTCATCAC-TG-AGAA-TTGTGT--TTGCT-TAG-GTTC-GA-GATATAATtc
gi|8 : TACAA-GTG---TTTCTC-AGTGG-TTC--------------AAA-CT---T-T-----GAT-------------TT-C-C------T--CAAGG--T--CAAAGT--TA-A-ATC-AT--AGTCCCAACTA-TTTTCT---C----T-GT-A--TAA-ATTAAC-A-AAT---CTA--TTCT-TGATCTC---T
gi|3 : CAG-GTG---ACTCTC-GATAA-CTCCNNNNNNNNNNNNNNNN-NN---N-N-----NNNN------NAACTGTT-C-G--AGTCT--TCTGTTAT--CGAAGT--GA-A---T-CC--GGTCCGGATTTGTTTTCT---C----T-AT-A--TGA-GTA-GC-A-A-TATTTTAACTGCT-CGATCT----TGGAACGTTCGA-T---CTCTTCGAAGTTTTCTTGGA---AT-CTCGTAAGT-G-AATTTGG-G---GTC-GT-AAA-CAT-A-TTTCAT--TGTTTTTCAC-TCTCGATCT-CTTGAAGGT-GGTCG--TAG-AG--TA-TACAAA-A--TCAATCAAAG-TGTCTAA-TTGT----TTCCGC----TTGGA-C-------TTAC-CTG-GATG--CCCGA---------GGG--TGCG--TGGCGAA-GGCA---A-TTAA-AAG-TTTAC-AAAGGGAACGTGCCGC---GC--TGC--TTTTG-AGGAGTGGGT-A-AGCACA---GT-A-AG-T--TT--GATA-GTTTAAT-TGGTC-ATTATCATT-C-T-TCAC-AC-C-TG-AGCA-ATGCG---TTGCA-TAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAAATTAAATTTATGATGTGTTTTG--CCGA---GACCATGCAAGAGT--AT-AT-TTTGAGACGATG-ATTTTGAGAAAAATGT----TTTGTGAAACATGTTTTGTAAAATACACGTT----TATT---CTCAGCA-CTAAAgggagatttttaccttgcaaactgaaatcatggtcccaattttttttccccccatataacttagcaaatctattcgagttttttatctcttaaagtgaaatttctgtgtaaagtgttggtagggtatacatgccatcaatcaaacaaataattatatccacttggacctggggattacctgggacaagcatggcgaaattagatagtgtttacataggtaaca
gi|6 : CTCTCAGATAA-CTC--------------GAA-CT---TTC-----GATCTCTCCGAGT--GTT-T-CTTGATCT--C------T--CGAAGT--GA-A-GTC-GCTGGGTCCGAATTT-TTTTCTCTTC----T-AA-A--TAA-CTAAGC-A-A-------A--T-TT-TA---------------------------CTCG-------TT---GATCTCT-C-CG-AAGT-G-AATT-GG-G---TCCCGT--AAACAT-ATTTTCAT-TGTTTTTTCACTTCTTGATCTCGTCGAAG-T-GGTCG--TAG-AG--TA-TAC-AA-ACATCAA-CAAAG-TGTTTTA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--ACCGA---------GGG-GAGTG--TGGCGAT-GGCA------TAG-AGGTTTTAC-AAAGGGAACGTGCAGCCGTGC-TGGC--TTTTG-ATA---GGG--G-GACA-GCAGGT-A---ATGGTT--AAACAGTTTAATCTGGTCAATTTT--CA-C-T-TCTC--C-C----AGCA-TTGTG---TTTGATTAG-GATCTGGTG-TATAATT-GACTA-GTG-agagaacaaatatatatataagctttccaatacatgtattttttattttatttatgcacgataaagttcttagtcaatatacctgaggatatgagataaaaaa
gi|11 : tgataaattactaaggctggaCTCTC-GATG---CC--------------ATA-CT---T-C-----GATCTATG--GAA--GTT-CTC--GGTCT--C------T--CGGA-T--GG-A-AAC-AC--AGCCCC-ATGT-TTTTC----T----TTCT-G--TAA-CTAAGC-ACA-T---T----------------------AAC------------TCTTGAA-GTTCCC---GATCTCT-CC---AAGTAA-AATTTGG-
gi|9 : TCTC-GATCT-CTC--------------GAA-C---------------------------GTT-C-G--GGTCT--C------T--CGAAGT--G--A-CTT-TG--GGTCCCG-------------------T-A------AA-ACA--T-A-A-T---TCA-----T-TG-TTTT---TC--ACTCTCGA-T---CTCTC-AAAGTa
gi|4 : atcaattccagttttga--------------GAA-CT---T-CGAAGAGATC------GAA--GTT-C-G--GAGTT--A------T--CG-AGA--GA-A-GTC-AC--Gggtggtagagtaaacaagacatcaacaaagtggctaattatctctgcttggacttatctggacgcctgagg
gi|14 : tacag-TTTTT----C----T-GT-A--TAA-GTAAGC-AGA-T---TTAC-T-CT-TGGTCTC---TATAACTCCCGA-T---CTCTTGAAA-TTCTT---GATCTGTGC----AAGT-G-AAtcgatctttctcgaagtgacagtcccggtcccgatgtttttcctctatatataaggtaagcaaatttacttctccgactcggttcgaacgttcgagtctctcgagttctcgatctcctcgaagtgaaatttggcggactcccgtaaaaacactatttcatagtgtttttcactctcccgaagtgggtcgtttagagcttagtacaaatacatcaacaaagtgtcgaattacaaaaatccgcttggagcttacctgcgacgcccccgagggagtgcagttggcgaaggacaattaacaagtttacaaagggaacgtgcgcccgcgctgcctttgaatagggtcgcgacacaaggtaacgattttagaaaagtttaatggtcaattatcactatttcatcactgagaattgtgtttgcttaggttcgagatataat
gi|11 : TTCGA-T---CTAT-GGAAGTTCTC---GG--TCT-CTCG-GA---------TGG-------------AAACACAG-CCCCAT-GTTTTTCT
gi|9 : ctctcgatgccatacTCGA-T---CTCTCGAACGTTCGG---G---TCT-CTCG-AAGT-G-ACTTTGG-G---TCCCGT-AAAACAT-A-ATTCAT--TGTTTTTCAC-TCTCGATCT-CTCAAAG-T-GGTGG--TAG-AG--TA-AACAAG-ACATCAA-CAAAG-TGGCTAA-TTAT----CTCTGC----TTGGA-C-------TTAT-CTG-GACG--CCTGA---------GGttctgtaactaagcacattaactcttgaagttcccgatctctccaagtaaaatttgga
gi|15 : atcaattccagttttgatcTCGA-T---CGTTCGAA-GTTCTC---GATCTCT-C----GAGT-G-AA----G-G---TCC
gi|7 : aagttacaggtgactccgataactcgacCTCGATCT-CTCGAAG-T-GGTCG--CGG-AG--TA-C-CGG---TAT--A-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGAA-GGC----AATTAA-AGT-TTTAC-AAAGGGAACGTGCCGCC-CGCGCTGC---TTTG-ATA---GGGT-G-G--ACACAGGTAA-CGAT--TT--AAT-AGTTTAAT-TGGTCAATTAT--CA-C-T-TCTC-AC-C-TG-AGCA-ATGTG---TTGTT-TGG-GATCCGC-G-TATAATC-GACTACGTG-TAT-G-AATAAAATTTATGAT-TGTTTTG--CCGA---GGCAATGCAAGAGT--AT-A--TTTGAGACGATG-ATTTTGAtc
gi|10 : ATCT-CTCGAAG-T-GGTC---TAG-AG--TA-TACAAA-ATATAAA-CAAAG-TGTCTAA-TTAT----TTCTGCTAAATTGGA-C-------TTAC-CTG-GACG--CCTGA---------GGG-AAGCG--TGGCGA------------TA---------AC-AAAAGGTATGCGCAGCC-CA---TGCGGCTTTG-ATA---GGGT-G-G--ACACAGGT-A-gacaataatttagagatgtctcaacgaattccaataaataatatttttt
gi|8 : AAG-T-GTTGG--TAG-GG--TA-TACATG-CCATCAA-TCAAA-CAAATAA-TTAT----ATCCAC----TTGGA-CCTGGGGATTAC-CTG-GGA-----CAA---------G------CA--TGGCGAA-ATTA---GAT--A-GTG-TTTAC-ATAGGTAACatggt
gi|5 : tacaagtgtttctcagtggttcaaactttgatttcctcaaggtcaaagttaaatcatagtcccaactattttctctgtataaattaacaaatctattcttgatctctgggagatttttaccttgcaaactgaaatcatggtcccaattttttttccccccatataacttagcaaatctattcgagttttttatctcttaaagtgaaatttctgtgta--TAG-AG--TA-TACAAA-ACATCAA-CAAAGGTGTCTAACTTATA---CTCCGC----TTG-A-C-------T-AC-CTG-GAC---CCCGA---------GGG-GTGCA--TGGCGAA-GGCA---A-TTAA-AAG-TTTAC-AAAGGGAACGTGCCGCC-CGCGCTGC--TTT-G-ATA---GGGT-G-GACACA--GGT-AACGAT--TT--GA-AAGTTTAAT-TGGTCAATTAT--CA-C-T-TTTCATC-T-GA-AAGA-ATG-----TTGCT-TAG-GTT--GA-G-TATAAT--GACTACGTG-TGT-G-GATAAAATTTATGAT-TGTTTTG--CCGA---GACCATGCAAGAGT--AT-A--TTTGAGACGATTCATTTTGAGAAAAATGT----TTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCTGCA-CTAAAa
gi|13 : tTCTAA-TTAT----TTTCGC----TTGGA-C-------TTAG-TTG-GATG--CCTGA---------GGC-AAGCG--TGGTGAT-GGCATGCAGTTAA-GTG-TTTAA-ATAGGGCTCGCATAGCC-CAT-GCGT--CTTTG-agagaaacaaataatattatgaactatcaatacatgtatttttttattttatttatgcacgataaagtgctagtcaatattacctgaggaataagagaaa
gi|16 : TTG-ATA---GGGT-G-GACACA--GGT-AACGAT--TT--GA-AAGTTTAAT-TGGTCAATTAT--
gi|12 : AAT-TGGTCAATT-------------TTAAC-CCTACACCT-CTGTA---TTGTC-TTT-GTT-----A-TATAATCTGGCTA-------T-G-AATGAAATTT----T-TGATTTGTTTGAAACTGACAATG--AGACT--GT-AATTTTGAGAAAATA-ATTTcact
gi|3 : AAACGTGTATTTTACAAAACATGTTTCACAAA----ACATT----TT-T---CTCAAAATagggtct
Alignments
lowQualScore : 2 11 11 11 22222 2 222 11 2 222222 1 6666666666666 333 2222222 333333333333 3333333333333333333333333 111111111 11111 333333333333333333333333333333 33333333333333333 444444444444444444 111 22222222 1111111 1111111 111111111 11 22222 11 111 11 11 111 22222222222 111
lowQualScore : 0 4 88 77 88 77777 2 3 66 0 000 2 88 0 999999 5 3 2 8888888888888 2 555 8888888 7 6 6 888 5 5 5 000000000000 5 5 66 0000000000000000000000000 1 333333333 66 66 4 0 22222 1 55 5 888 5 66 888 0 4 888888888888888888888888888888 33 1 55 4 777 99999 77777777777777777 66 5 77 77 222222222222222222 000 55 5 5 11111111 5 5 4444444 777 777 4 4 55 4 55 4 4 8 4 3 999999 7777 3 1111111 3 3 55 444444444 555 11 1 11111 44444 4 5 66 8 4 4 4 4 66 66 66 333 4 4 4 4 77 5 22 55 4 888 1 5 77 5 5 5 4 5 6 6 6 6 99 7 6 99 6 6 666 3 8 11111111111 111
lowQualScore : . . .. .. .. ..... . . .. . ... . .. . ...... . . . ............. . ... ....... . . . ... . . . ............ . . .. ......................... . ......... .. .. . . ..... . .. . ... . .. ... . . .............................. .. . .. . ... ..... ................. .. . .. .. .................. ... .. . . ........ . . ....... ... ... . . .. . .. . . . . . ...... .... . ....... . . .. ......... ... .. . ..... ..... . . .. . . . . . .. .. .. ... . . . . .. . .. .. . ... . . .. . . . . . . . . . .. . . .. . . ... . . ........... ...
lowQualScore : 0 0 00 55 00 00000 5 0 55 0 555 5 55 0 000000 0 0 5 0000000000000 5 000 0000000 3 7 6 888 0 0 0 666666666666 0 0 11 9999999999999999999999999 7 444444444 11 11 4 9 44444 7 99 7 888 0 99 888 4 4 111111111111111111111111111111 00 1 55 4 888 22222 00000000000000000 77 7 99 99 111111111111111111 000 99 7 7 33333333 7 7 4444444 222 888 4 4 55 0 55 0 0 0 0 6 888888 7777 6 8888888 6 6 00 555555555 999 00 1 44444 11111 0 7 33 2 0 4 4 4 11 77 99 999 4 4 4 4 55 0 88 55 2 888 0 0 55 0 0 7 3 7 7 7 7 7 22 5 7 22 7 7 888 2 2 88888888888 000
consensus : NNNTAATTAACAAANTCATCATAGTGGTGTGGAATCNGTGATATGCAANATGNTGNNATCTGCCTGGTAATNTGTAGCCAACTTAATTGCCCAAAGTTATNTNTGGACAATGTAGCTCANTGATTTAGGATTTAAATATGATGCAGGGTTACAG-GTGACT---CTC-GAT-AACT-C------------GAA-CTT-CGA--TC--T-C---G-AA--GTT-C-C----GATCT--C------T--CGAAGT--GA-AGTC-NC--GGTCCCGAT-TT-TTTTC---TCTA-TA--TA---AGTAAGC-A-A--T---TT--A--T-CTC-GATCTC---TCGAACGTT--CGA-T---CTCTCGAAAGTTCTC---GATCTCTCTCG-AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-TTTCAT--T-G---TTTTTCA-C-TCTCGA-------TCT-C-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT-T----TCCGC----TTGGA-C-------TTAC-CTG-GACGCCC--GA---------GGG-GTGCG--TGGCGAAGGCA---A-TTAA-AGG-TT-TACAAAGGGAACGCGCCGCCCGCGCT-GCCTTTG-ATA-GGGT-G-GACA--CACAGGTAACGATTT--GATAAGTTTAAT-TGGTCAATTATC-AC-T-TCTCAC-C-CTGAGCA-ATGCG---TTGCNTAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGAAAAACGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCAGC-A-CTAAA
Reference ( family-804 ) : NNNTAATTA-CAAAATCATCATAGTGGTGTGGAATCAGTGATATGCAACATGATGTCAT-TGCTTGGTAATGTGTAGTCAA-TTAATTGCCCAAAGTTATTTCTG-----T-TAG---AGTAATTTA---TTTA--TAT--TGTAGGGTTACAG-GTGNCT---CTC-GAT-AACT-C------------GAA-CTT-CGA--TC--T-T---G-AA--GTT-C-C----GGTCT--C------T--CGAAGT--GA-AGTC-NC--GGTCCCGAT-TT-TTTTC---TCTA-TA--TA---AGTAAGC-A-A--T---TT--A--T-CTC-GATCTC---TCGAACGTT--CGA-T---CTCTCGAAAGTTCTC---GATCTCTCTCG-AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-TTTCAT--T-N---TTTTTCA-C-TCTCGA-------TCT-C-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT-T----TCCGC----TTGGA-C-------TTAC-CTG-GACGCCC--GA---------GGG-GTGCG--TGGCGAAGGCA---AATTAA-AAG-TT-TACAAAGGGAACGCGCCGCCCGCGCT-GCCTTTG-ATA-GGGT-G-GACA--CACAGGTAACGATTT--GATAAGTTTAAT-TGGTCAATTATC-AC-T-TCTCAN-C-CTGAGCA-ATGCG---TTGCNTAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGACNATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGAAAAACGTTTTGCGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCAGC-A-CTAAA
gi|1 : TAATTA-CAAAATCATCATAGTGGTGTGGAATCAGTGATATGCAACATGATGTCAT-TGCTTGGTAATGTGTAGTCAA-TTAATTGCCCAAAGTTATTTCTG-----T-TAG---AGTAATTTA---TTTA--TAT--TGTAGGG---CAG-GTG--T---CTC-GATAAACTCC------------GAAGCTT-CGATCTC--T-C---G-AA--GTTAT-T----GCTCT--C------TGGCGAAGTAAGA-AGTCGCC--GGTCCCGA--TT-TTTTC---TCTATTAGTTA---AGT-AGCAA-A--G---TT--AACT-CTC-GCTCT----TCGAACGTT--CGA-TTCCCTCTC-AAATTTC------ATCTCTT----AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-TTTCAT--T-G-----TTTCA-C-TCTCGA-------TCT---T---CGAGG-TGG-TCGC--AGTAA--T--CACAAA-ACATCAACCAAAG-TGTCTAC-TTAT-T----TCCAC----TTGGA-C-------TTACACTG-GACGCCC--GAAAAAAAGACGGG-GTGGGGCTGGCGAAGGCC---ATTTAA-AGA-TTATA-AAAGGGAA--CGTCGCCCGCGCT-GCTTT---ATA--GGT-G-GACA--CAC-GGTAACGATTT--GATTGTTTTAAT-T-GTCAATTATCTACGT-TCTCAC-C-C---GCACATGCGCCTCTGCATAGTTTTCTGA-A--ATAATC-GAC-ACGTGTTATAGAA-TAAAATTTA-GA-T-TGTTTTG--CCGAGATTAT----AGAGCGAATGATTT-GAGACAA---ATTTTGGGTAGAACATT---------ATGTTTTAAAAAATAAATGTTTTTCTA-TTTCCTCAGCGA-CTAAA
gi|10 : tgtA-------TCT-C-T---CGAAG-TGG-TC-T--AG-AG--TA-TACAAA-ATATAAA-CAAAG-TGTCTAA-TTAT-T----TCTGCTAAATTGGA-C-------TTAC-CTG-GACGCCT--GA---------GGG-AAGCG--TGGCGA-----------TA----------ACAAAAGGTATGCGCAGCCCATGC--GGCTTTG-ATA-GGGT-G-G--A--CACAGGTAATGGTtagagacaaataaataatgaaactttcaaatacatcgtattttttttattttattatggacataaagttcgttagctcaatctattacgatgagattgaaggagaaaaaaa
gi|11 : CT---CTC-GAT-G--C-C------------ATA-CTT-CGA--TC--TAT---GGAA--GTT-CTC----GGTCT--C------T--CGGA-T--GG-AAAC-AC--AGCCCC-AT-GT-TTTTC---TTTC-TG--TA---ACTAAGC-ACA--T---T-------------AACTC---TTGAA-GTTCCCGA-T---CTCTCCAA
gi|11 : --TC--T-T---G-AA--GTTCC-C----GATCT--C------T--CCAAGT--AA-AATgtaaaatttgga
gi|12 : ctctcgatgccatacttcgatctatggaagttctcggtctctcggatggaaacacagccccatgtttttctttctgtaactaagcacattaacAAT-TGGTCAATTTTA-AC-C-CTACA--C-CT---C---TGTA---TTGTCTTT-GTT-----A-TATAATCTGGCTA-------T-GAA-TGAAATTTTTGATT-TGTTT------GAAAC--TGACAA------------T-GAGACTG-TAATTTTGAGAAAAttgga
gi|13 : TCTAA-TTAT-T----TTCGC----TTGGA-C-------TTAG-TTG-GATGCCT--GA---------GGC-AAGCG--TGGTGATGGCATGCAGTTAA-GTG-TT-TAAATAGGGCTCGCATAGCCCATGC--GTCTTTG-taatttagggtct
gi|14 : TTTT---TCTG-TA--TA---AGTAAGC-AGA--T---TT--AC-T-CTT-GGTCTC---TATAACTCC--CGA-T---CTCTTGAAA-TTCTT---GATCTGT---GCAAGTGAA-
gi|15 : GTTACAG-GTGACT---C-C-GAT-AACT-C------------GA---CT-CGA--TCGTT-C---G-AA--GTT-CTC----GATCT--C------T--CG-AGT--GA-AG
gi|16 : aaTTG-ATA-GGGT-G-GACA--CA--GGTAACGATTT--GA-AAGTTTAAT-TGGTCAATTATC-AC-T-gtcctc
gi|2 : TAATTAACAAATTCA--ATAGT--TGTAAAATCC-TGA-A---AAGATGCTGAAATCTGCCT---AATTTG--GCCAACTTA------CAAA-TTATGTGTGGACAATGTAGCTCATTGATTTAGGATTTAAATATGATACAGGGTTACAG-GTGCCT---CTC-GAT-AACT-C------------GAA-CTT-CGA--TC--------A-AA--GTT-C-C----GATCT--C------T--CGAAGT--GA-AGTC-CC--GGTCCCGAT-TT-TTTTC----CTA-TA--TA---AGTAAGC-A-A--T---TT--A--T-CTT-GATCTC---TCAAACGTT--CGA-T---CTCTCGAAAGTTCTC---GATCTCTCTCG-AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-CG-TTTCATG-T-T---TTTTTCA-C-TCTCGA-------TCTTC-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT-T----TCCGC----TTGGA-C-------TTAC-CTG-GACGCCC--GA---------GGG-GTGCG--TGGCGAAGACA---AATTAA-AAG-AT-TACAAAGGGAACGCGCTGCCCGC-CT-GCTTTTG-ATATGGGT-G-GACA--CACAGGT-ACGATTT--GATAAGTTTAAT-TGGTCAATTATT-TC-T-TCTCAA-C-CTAAGCA-ATGCG---TTGCATAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTGTTCCAAGGCCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAAGAAAACGTTTTGTGAAACATGTTTTGTAAAATACACATT----TA-T---CTCAGC-ATCTAAA
gi|3 : gtaCAG-GTGACT---CTC-GAT-AACT-CCNNNNNNNNNNNNNN-NNN-NNN--NN--N-N---N-AACTGTT-C-G----AGTCT--TCTGTTAT--CGAAGT--GA-A-TC--C--GGTCCGGAT-TTGTTTTC---TCTA-TA--TG---AGTA-GC-A-A--TATTTT--AACTGCTC-GATCT----TGGAACGTT--CGA-T---CTCTTCGAAGTTTTCTTGGA---ATCTCGTAAGTGAA-TTTG-G--G--GTC-G------------------TAA---A--CA-TA-TTTCAT--T-G---TTTTTCA-C-TCTCGA-------TCT-C-T---TGAAGGTGG-TCGT--AG-AG--TA-TACAAA-A--TCAATCAAAG-TGTCTAA-TTGT-T----TCCGC----TTGGA-C-------TTAC-CTG-GATGCCC--GA---------GGG--TGCG--TGGCGAAGGCA---A-TTAA-AAG-TT-TACAAAGGGAACGTGCCGC----GCT-GCTTTTG-A-G-GAGT-G-GGTAAGCACAG-TAA--GTTT--GATA-GTTTAAT-TGGTCA-TTATC-AT-T-CTTCACAC-CTGAGCA-ATGCG---TTGCATAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAAATTAAATTTATGA-TGTGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTTTGAGACGA-TGATTTTGAGAAAAATGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TATT---CTCAGC-A-CTAAA
gi|4 : TACAGCGTGACTTCTCTC-GAT-AACT-CC-----------GAA-CTT-CGA--TC--T-CTTCG-AA--GTT-CTC----GATCTTTC------T--CGAAGT--GACAGTC-CC--GGTCCCGATGTT-TTTCC---TCTA-TA--TATAAGGTAAGC-A-AA-T---TT--ACTT-CTCCGA-CTCGGTTCGAACGTT--CGAGT---CTCTCGA--GTTCTC---GATCTC-CTCG-AAGTGAAATTTG-GCGGACTCCCG------------------TAA---AAACACTA-TTTCATAGT-G---TTTTTCA-C-TCTC---------------C---CGAAG-TGGGTCGTTTAG-AGCTTAGTACAAATACATCAA-CAAAG-TGTCGAA-TTAC-AAAAATCCGC----TTGGAGC-------TTAC-CTGCGACGCCCCCGA---------GGGAGTGCAGTTGGCGAAGGAC---AATTAACAAG-TT-TACAAAGGGAACGTGC-GCCCGCGCT-GCCTTTGAATA-GGGTCGCGACA--CA-AGGTAACGATTTTAGAAAAGTTTAA--TGGTCAATTATC-AC-TATTTCAT-CACTGAGAA-TTGTGT--TTGCTTAG-GTTC-GA-GATATAATagagaacaaatatatatataagctttccaatacatgtattttttattttatttatgcacgataaagttcttagtcaatatacctgaggatatgagataaaaaa
gi|5 : T--AG-AG--TA-TACAAA-ACATCAA-CAAAGGTGTCTAACTTATAC----TCCGC----TTG-A-C-------T-AC-CTG-GAC-CCC--GA---------GGG-GTGCA--TGGCGAAGGCA---A-TTAA-AAG-TT-TACAAAGGGAACGTGCCGCCCGCGCT-GC-TTTG-ATA-GGGT-G-GACA--CA--GGTAACGATTT--GA-AAGTTTAAT-TGGTCAATTATC-AC-T-TTTCAT-C-TGAAAGA-ATG-----TTGCTTAG-GTT--GA-G-TATAAT--GACTACGTG-TGT-GGA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGATTCATTTTGAGAAAAATGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCTGC-A-CTAAA
gi|6 : tGACT---CTCAGAT-AACT-C------------GAA-CTTTCGA--TC--T-CTCCG-AGT-GTT-T-CTT--GATCT--C------T--CGAAGT--GA-AGTC-GCTGGGTCCGAAT-TT-TTTTCTCTTCTA-AA--TA---ACTAAGC-A-AATT---TT--A----CTC-G----------------T--TGA-T---CTCTC---------C---GA-----------AGTGAA--TTG-G--G--TCCCG------------------T-A---AA-CA-TATTTTCAT--TGT---TTTTTCA-CTTCTTGA-------TCT-CGT---CGAAG-TGG-TCGT--AG-AG--TA-TAC-AA-ACATCAA-CAAAG-TGTTTTA-TTAT-T----TCCGC----TTGGA-C-------TTAC-CTG-GACGACC--GA---------GGG-GAGTG--TGGCGATGGCA------TAG-AGGTTT-TACAAAGGGAACGTGCAG-CCGTGCTGGCTTTTG-ATA-GGG--G-GACA---GCAGGTAATGGTTA--AAC-AGTTTAATCTGGTCAATTTTC-AC-T-TCTC---C-C--AGCA-TTGTGT--TTGATTAG-GATCTGGTG-TATAATT-GACTA-GTG-agagaaacaaataatattatgaactatcaatacatgtatttttttattttatttatgcacgataaagtgctagtcaatattacctgaggaataagagaaa
gi|7 : tgataaattactaaggctgCTCGA-------TCT-C-T---CGAAG-TGG-TCGC--GG-AG--TA-C-CGG---TAT--A-CAAAG-TGTCTAA-TTAT-T----TCCGC----TTGGA-C-------TTAC-CTG-GACGCCC--GA---------GGG-GTGCG--TGGCGAAGGCA---A-TTAA-AGT-TT-TACAAAGGGAACGTGCCGCCCGCGCT-GC-TTTG-ATA-GGGT-G-GACA--CA--GGTAACGATTT--AATA-GTTTAAT-TGGTCAATTATC-AC-T-TCTCA--C-CTGAGCA-ATGTG---TTGTTTGG-GATCCGC-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGGCAATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGACAA
gi|8 : TACAA-GTGTTT---CTC-AGT-GGTT-C------------AAA-CTT-TGA--T----------------TT-C-CTCAAGGTC--------------AAAGT--TA-AATC-AT--AGTCCCAAC-TA-TTTTC---TCTG-TA--TA---AATTAAC-A-A----------A--T-CT---AT------TC------T--TGA-T---CTCTGGGAGATTTT------TACCTTGCA-AACTGAA-ATCATG--G--TCCCAATTTTTTTTCCCCCCATATAACTTAG-CA-AA-TCT-AT--T-CGAGTTTTTTATC-TCTTAAAGTGAAATTT-C-TGTGTAAAG-TGT-TGGT--AG-GG--TA-TACATG-CCATCAA-TCAAA-CAAATAA-TTAT-A----TCCAC----TTGGA-CCTGGGGATTAC-CTG-GGA---C--AA---------G------CA--TGGCGAAATTA---GAT--A-GTG-TT-TACATAGGTAACtaatttagagatgtctcaacgaattccaataaataatatttttt
gi|9 : C-A-G--T---TTTGA--T-CTC-GATCTC---TCGAACGTT--CGa
gi|9 : atcaattcT--CGA-T---CTCTCGAACGTTCGG---G---TCTCTCG-AAGTGAC-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-ATTCAT--T-G---TTTTTCA-C-TCTCGA-------TCT-C-T---CAAAG-TGG-TGGT--AG-AG--TA-AACAAG-ACATCAA-CAAAG-TGGCTAA-TTAT-C----TCTGC----TTGGA-C-------TTAT-CTG-GACGCCT--GA---------GGggtctctcgaagtgactttgggtcccgtaaaacataattcattgtttttcactctcgatctctcaaagtggtggtagagtaaacaagacatcaacaaagtggctaattatctctgcttggacttatctggacgcctgagg
Alignments
lowQualScore : 1 11 11 11 22222 1 222 11 1 222222 1 3333333 222 222 11 11 333333333333 2222222 11 222222 111111111 11111 333333333333333333333333333333 33333333333333333 444444444444444444 111 111111 1111111 1111 1111111 111111111 11 111111 11 1111 111 22222222222 111
lowQualScore : 5 1 88 77 66 77777 1 1 22 5 000 1 88 5 999999 5 1 1 2222222 000 1 000 88 88 7 6 5 888 5 5 5 000000000000 5 5 66 777 3333333 00 222222 333333333 66 66 4 0 22222 1 55 5 888 5 66 888 0 4 888888888888888888888888888888 33 1 55 4 777 99999 77777777777777777 66 5 77 77 222222222222222222 000 55 5 5 444444 5 5 5 4444444 777 777 4 4 55 4 55 4 4 8 4 3 1111 7777 3 1111111 3 3 55 444444444 555 11 8888888888888 4 111111 4 0 66 22 4 4 4 4 3 66 88 66 44 4 4 4 4 88 6666 55 4 888 1 5 77 5 5 5 4 5 6 6 6 6 99 5 6 99 6 6 666 3 11111111111 111
lowQualScore : . . .. .. .. ..... . . .. . ... . .. . ...... . . . ....... ... . ... .. .. . . . ... . . . ............ . . .. ... ....... .. ...... ......... .. .. . . ..... . .. . ... . .. ... . . .............................. .. . .. . ... ..... ................. .. . .. .. .................. ... .. . . ...... . . . ....... ... ... . . .. . .. . . . . . .... .... . ....... . . .. ......... ... .. ............. . ...... . . .. .. . . . . . .. .. .. .. . . . . .. .... .. . ... . . .. . . . . . . . . . .. . . .. . . ... . ........... ...
lowQualScore : 5 0 00 55 00 00000 0 0 00 0 555 0 55 0 000000 0 0 0 5555555 555 0 555 55 00 3 7 1 888 0 0 0 666666666666 0 0 11 888 9999999 66 000000 444444444 11 11 4 9 44444 7 99 7 888 0 99 888 4 4 111111111111111111111111111111 00 1 55 4 888 22222 00000000000000000 77 7 99 99 111111111111111111 000 99 7 7 666666 7 7 7 4444444 222 888 4 4 55 0 55 0 0 0 0 6 4444 7777 6 8888888 6 6 00 555555555 999 00 6666666666666 0 555555 0 1 33 88 0 4 4 4 6 11 44 99 99 4 4 4 4 44 8888 55 2 888 0 0 55 0 0 7 3 7 7 7 7 7 22 2 7 22 7 7 888 2 88888888888 000
consensus : NNNTAATTAACAAANTCATCATAGTGGTGTGGAATCNGTGATATGCAANATGNTGNNATCTGCCTGGTAATNTGTAGCCAACTTAATTGCCCAAAGTTATNTNTGGACAATGTAGCTCANTGATTTAGGATTTAAATATGATGCAGGGTTACAG-GTGACT---CTC-GAT-AACT-C------------GAA-CTT-CGA--T---C--TC---GAA--GTT-C-C--GATCT--C------T--CGAAGT--GA-AGTC-NC--GGTCCCGAT-TT-TTTTC---TCTA-TA--TA---AGTAAGC-A-A--T---TT--A--T-CTC-GATCTC---TCGAACGTT--CGA-T---CTCTCGAAAGTTCTC---GATCTCTCTCG-AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-TTTCAT--T---G-TTTTTCA-C-TCTCGA-------TCT-C-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGG-C-AA-TTAA-A--G-G-TT-TACAAAGGGAACGCGCCGCCCGCGCT-GCCTTTG-ATA-GGGT-G-GACA--CACAGGTAACGATTT--GATAAGTTTAAT-TGGTCAATTATC-AC-T-TCTCAC-C-CTGAGCA-ATGCG---TTGCNTAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGAAAAACGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCAGC-A-CTAAA
Reference ( family-804 ) : NNNTAATTAACAAANTCATCATAGTGGTGTGGAATCNGTGATATGCAANATGNTGNNATCTGCCTGGTAATNTGTAGCCAACTTAATTGCCCAAAGTTATNTNTGGACAATGTAGCTCANTGATTTAGGATTTAAATATGATGCAGGGTTACAG-GTGACT---CTC-GAT-AACT-C------------GAA-CTT-CGA--T---C--TC---GAA--GTT-C-C--GATCT--C------T--CGAAGT--GA-AGTC-NC--GGTCCCGAT-TT-TTTTC---TCTA-TA--TA---AGTAAGC-A-A--T---TT--A--T-CTC-GATCTC---TCGAACGTT--CGA-T---CTCTCGAAAGTTCTC---GATCTCTCTCG-AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-TTTCAT--T---G-TTTTTCA-C-TCTCGA-------TCT-C-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGG-C-AA-TTAA-A--G-G-TT-TACAAAGGGAACGCGCCGCCCGCGCT-GCCTTTG-ATA-GGGT-G-GACA--CACAGGTAACGATTT--GATAAGTTTAAT-TGGTCAATTATC-AC-T-TCTCAC-C-CTGAGCA-ATGCG---TTGCNTAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGAAAAACGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCAGC-A-CTAAA
gi|1 : TAATTA-CAAAATCATCATAGTGGTGTGGAATCAGTGATATGCAACATGATGTCAT-TGCTTGGTAATGTGTAGTCAA-TTAATTGCCCAAAGTTATTTCTG-----T-TAG---AGTAATTT---ATTT--ATAT--TGTAGGG---CAG-GTG--T---CTC-GATAAACTCC------------GAAGCTT-CGATCT---C--TC---GAA--GTTAT-T--GCTCT--C------TGGCGAAGTAAGA-AGTCGCC--GGTCCCGA--TT-TTTTC---TCTATTAGTTA---AGT-AGCAA-A--G---TT--AACT-CTC-GCTCT----TCGAACGTT--CGA-TTCCCTCTC-AAATTTC------ATCTCTT----AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-TTTCAT--T---G---TTTCA-C-TCTCGA-------TCT---T---CGAGG-TGG-TCGC--AGTAA--T--CACAAA-ACATCAACCAAAG-TGTCTAC-TTAT----TTCCAC----TTGGA-C-------TTACACTG-GACG--CCCGAAAAAAAGACGGG-GTGGGGCTGGCGA----AGG-C-CATTTAA-A--G-A-TTATA-AAAGGGAA--CGTCGCCCGCGCT-GCTTT---ATA--GGT-G-GACA--CAC-GGTAACGATTT--GATTGTTTTAAT-T-GTCAATTATCTACGT-TCTCAC-C-C---GCACATGCGCCTCTGCATAGTTTTCTGA-A--ATAATC-GAC-ACGTGTTATAGAA-TAAAATTTA-GA-T-TGTTTTG--CCGAGATTAT----AGAGCGAATGATTT-GAGACAA---ATTTTGGGTAGAACATT---------ATGTTTTAAAAAATAAATGTTTTTCTA-TTTCCTCAGCGA-CTAAA
gi|10 : tgtA-------TCT-C-T---CGAAG-TGG-TC-T--AG-AG--TA-TACAAA-ATATAAA-CAAAG-TGTCTAA-TTAT----TTCTGCTAAATTGGA-C-------TTAC-CTG-GACG--CCTGA---------GGG-AAGCG--TGGCGA--------------TA-------------ACAAAAGGTATGCGCAGCCCATGC--GGCTTTG-ATA-GGGT-G-G--A--CACAGGTAATGGTtagagacaaataaataatgaaactttcaaatacatcgtattttttttattttattatggacataaagttcgttagctcaatctattacgatgagattgaaggagaaaaaaa
gi|11 : CT---CTC-GAT-G--C-C------------ATA-CTT-CGA--T---C--TATG-GAA--GTT-CTC--GGTCT--C------T--CGGA-T--GG-AAAC-AC--AGCCCC-AT-GT-TTTTC---TTTC-TG--TA---ACTAAGC-ACA--T---T-------------AACTC---TTGAA-GTTCCCGA-T---CTCTCCAA
gi|11 : --T---C--TT---GAA--GTT-C-CC-GATCT--C------T--CCAAGT--AA-AATgtaaaatttgga
gi|12 : ctctcgatgccatacttcgatctatggaagttctcggtctctcggatggaaacacagccccatgtttttctttctgtaactaagcacattaacAAT-TGGTCAATTTTA-AC-C-CTACAC-C-TC-------TGTA---TTGTCTTT-GTT-----A-TATAATCTGGCTA-------T-GAA-TGAAATTTTTGATT-TGTTT------GAAAC--TGACAA------------T-GAGACTG-TAATTTTGAGAAAAttgga
gi|13 : TCTAA-TTAT----TTTCGC----TTGGA-C-------TTAG-TTG-GATG--CCTGA---------GGC-AAGCG--TGGTGATGGCATG-C-AG-TTAA-G--T-G-TT-TAAATAGGGCTCGCATAGCCCATGC--GTCTTTG-taatttagggtct
gi|14 : TTTT---TCTG-TA--TA---AGTAAGC-AGA--T---TT--AC-T-CTT-GGTCTC---TATAACTCC--CGA-T---CTCTTGAAA-TTCTT---GATCTGT---GCAAGTGAA-
gi|15 : GTTACAG-GTGACT---C-C-GAT-AACT-C------------GA---CT-CGA--T---CGTTC---GAA--GTT-CTC--GATCT--C------T--CG-AGT--GA-AG
gi|16 : aaTTG-ATA-GGGT-G-GACA--CA--GGTAACGATTT--GA-AAGTTTAAT-TGGTCAATTATC-AC-T-gtcctc
gi|2 : TAATTAACAAATTCA--ATAGT--TGTAAAATCC-TGA-A---AAGATGCTGAAATCTGCCT---AATTTG--GCCAACTTA------CAAA-TTATGTGTGGACAATGTAGCTCATTGATTTAGGATTTAAATATGATACAGGGTTACAG-GTGCCT---CTC-GAT-AACT-C------------GAA-CTT-CGA--T---C-------AAA--GTT-C-C--GATCT--C------T--CGAAGT--GA-AGTC-CC--GGTCCCGAT-TT-TTTTC----CTA-TA--TA---AGTAAGC-A-A--T---TT--A--T-CTT-GATCTC---TCAAACGTT--CGA-T---CTCTCGAAAGTTCTC---GATCTCTCTCG-AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-CG-TTTCATG-T---T-TTTTTCA-C-TCTCGA-------TCTTC-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGA-CAAA-TTAA-A--A-G-AT-TACAAAGGGAACGCGCTGCCCGC-CT-GCTTTTG-ATATGGGT-G-GACA--CACAGGT-ACGATTT--GATAAGTTTAAT-TGGTCAATTATT-TC-T-TCTCAA-C-CTAAGCA-ATGCG---TTGCATAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTGTTCCAAGGCCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAAGAAAACGTTTTGTGAAACATGTTTTGTAAAATACACATT----TA-T---CTCAGC-ATCTAAA
gi|3 : gtaCAG-GTGACT---CTC-GAT-AACT-CCNNNNNNNNNNNNNN-NNN-NNN--N---N--NN---NAACTGTT-C-G--AGTCT--TCTGTTAT--CGAAGT--GA-A-TC--C--GGTCCGGAT-TTGTTTTC---TCTA-TA--TG---AGTA-GC-A-A--TATTTT--AACTGCTC-GATCT----TGGAACGTT--CGA-T---CTCTTCGAAGTTTTCTTGGA---ATCTCGTAAGTGAA-TTTG-G--G--GTC-G------------------TAA---A--CA-TA-TTTCAT--T---G-TTTTTCA-C-TCTCGA-------TCT-C-T---TGAAGGTGG-TCGT--AG-AG--TA-TACAAA-A--TCAATCAAAG-TGTCTAA-TTGT----TTCCGC----TTGGA-C-------TTAC-CTG-GATG--CCCGA---------GGG--TGCG--TGGCGA----AGG-C-AA-TTAA-A--A-G-TT-TACAAAGGGAACGTGCCGC----GCT-GCTTTTG-A-G-GAGT-G-GGTAAGCACAG-TAA--GTTT--GATA-GTTTAAT-TGGTCA-TTATC-AT-T-CTTCACAC-CTGAGCA-ATGCG---TTGCATAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAAATTAAATTTATGA-TGTGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTTTGAGACGA-TGATTTTGAGAAAAATGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TATT---CTCAGC-A-CTAAA
gi|4 : TACAGCGTGACTTCTCTC-GAT-AACT-CC-----------GAA-CTT-CGA--T---C--TCTTCGAA--GTT-CTC--GATCTTTC------T--CGAAGT--GACAGTC-CC--GGTCCCGATGTT-TTTCC---TCTA-TA--TATAAGGTAAGC-A-AA-T---TT--ACTT-CTCCGA-CTCGGTTCGAACGTT--CGAGT---CTCTCGA--GTTCTC---GATCTC-CTCG-AAGTGAAATTTG-GCGGACTCCCG------------------TAA---AAACACTA-TTTCATAGT---G-TTTTTCA-C-TCTC---------------C---CGAAG-TGGGTCGTTTAG-AGCTTAGTACAAATACATCAA-CAAAG-TGTCGAA-TTACAAAAATCCGC----TTGGAGC-------TTAC-CTGCGACGCCCCCGA---------GGGAGTGCAGTTGGCGA----AGGAC-AA-TTAACA--A-G-TT-TACAAAGGGAACGTG-CGCCCGCGCT-GCCTTTGAATA-GGGTCGCGACA--CA-AGGTAACGATTTTAGAAAAGTTTAA--TGGTCAATTATC-AC-TATTTCAT-CACTGAGAA-TTGTGT--TTGCTTAG-GTTC-GA-GATATAATagagaacaaatatatatataagctttccaatacatgtattttttattttatttatgcacgataaagttcttagtcaatatacctgaggatatgagataaaaaa
gi|5 : T--AG-AG--TA-TACAAA-ACATCAA-CAAAGGTGTCTAACTTATA---CTCCGC----TTG-A-C-------T-AC-CTG-GAC---CCCGA---------GGG-GTGCA--TGGCGA----AGG-C-AA-TTAA-A--A-G-TT-TACAAAGGGAACGTGCCGCCCGCGCT-GC-TTTG-ATA-GGGT-G-GACA--CA--GGTAACGATTT--GA-AAGTTTAAT-TGGTCAATTATC-AC-T-TTTCAT-C-TGAAAGA-ATG-----TTGCTTAG-GTT--GA-G-TATAAT--GACTACGTG-TGT-GGA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGATTCATTTTGAGAAAAATGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCTGC-A-CTAAA
gi|6 : tGACT---CTCAGAT-AACT-C------------GAA-CTTTCGA--T---C--TCTCCGAGT-GTT-T-CTTGATCT--C------T--CGAAGT--GA-AGTC-GCTGGGTCCGAAT-TT-TTTTCTCTTCTA-AA--TA---ACTAAGC-A-AATT---TT--A----CTC-G----------------T--TGA-T---CTCTC---------C---GA-----------AGTGAA--TTG-G--G--TCCCG------------------T-A---AA-CA-TATTTTCAT--T---GTTTTTTCA-CTTCTTGA-------TCT-CGT---CGAAG-TGG-TCGT--AG-AG--TA-TAC-AA-ACATCAA-CAAAG-TGTTTTA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--ACCGA---------GGG-GAGTG--TGGCGA----TGG-C-A---TAG-A--G-GTTT-TACAAAGGGAACGTGCAG-CCGTGCTGGCTTTTG-ATA-GGG--G-GACA---GCAGGTAATGGTTA--AAC-AGTTTAATCTGGTCAATTTTC-AC-T-TCTC-C-C----AGCA-TTGTGT--TTGATTAG-GATCTGGTG-TATAATT-GACTA-GTG-agagaaacaaataatattatgaactatcaatacatgtatttttttattttatttatgcacgataaagtgctagtcaatattacctgaggaataagagaaa
gi|7 : tgataaattactaaggctgCTCGA-------TCT-C-T---CGAAG-TGG-TCGC--GG-AG--TA-C-CGG---TAT--A-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGG-C-AA-TTAA-A--G-T-TT-TACAAAGGGAACGTGCCGCCCGCGCT-G-CTTTG-ATA-GGGT-G-G--A--CACAGGTAACGATTT--AAT-AGTTTAAT-TGGTCAATTATC-AC-T-TCTCA--C-CTGAGCA-ATGTG---TTGTTTGG-GATCCGC-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGGCAATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGACAA
gi|8 : TACAA-GTGTTT---CTC-AGT-GGTT-C------------AAA-CTT-TGA--TTTCC--TC---AAG--GT------------------------CAAAGT--TA-AATC-AT--AGTCCCAAC-TA-TTTTC---TCTG-TA--TA---AATTAAC-A-A----------A--T-CT---AT------TC------T--TGA-T---CTCTGGGAGATTTT------TACCTTGCA-AACTGAA-ATCATG--G--TCCCAATTTTTTTTCCCCCCATATAACTTAG-CA-AA-TCT-AT--TCGAG-TTTTTTATC-TCTTAAAGTGAAATTT-C-TGTGTAAAG-TGT-TGGT--AG-GG--TA-TACATG-CCATCAA-TCAAA-CAAATAA-TTAT----ATCCAC----TTGGA-CCTGGGGATTAC-CTG-GGA-----CAA---------G------CA--TGGCGA----A------A-TTAG-ATAGTG-TT-TACATAGGTAACtaatttagagatgtctcaacgaattccaataaataatatttttt
gi|9 : C-A-G--T---TTTGA--T-CTC-GATCTC---TCGAACGTT--CGa
gi|9 : atcaattcT--CGA-T---CTCTCGAACGTTCGG---G---TCTCTCG-AAGTGAC-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-ATTCAT--T---G-TTTTTCA-C-TCTCGA-------TCT-C-T---CAAAG-TGG-TGGT--AG-AG--TA-AACAAG-ACATCAA-CAAAG-TGGCTAA-TTAT----CTCTGC----TTGGA-C-------TTAT-CTG-GACG--CCTGA---------GGggtctctcgaagtgactttgggtcccgtaaaacataattcattgtttttcactctcgatctctcaaagtggtggtagagtaaacaagacatcaacaaagtggctaattatctctgcttggacttatctggacgcctgagg
Alignments
lowQualScore : 1 11 11 11 22222 1 222 11 1 222222 1 3333333 222 222 11 11 333333333333 2222222 11 222222 111111111 11111 333333333333333333333333333333 33333333333333333 444444444444444444 111 111111 1111111 1111 1111111 111111111 11 111111 11 1111 111 22222222222 111
lowQualScore : 5 1 88 77 66 77777 1 1 22 5 000 1 88 5 999999 5 1 1 2222222 000 1 000 88 88 7 6 5 888 5 5 5 000000000000 5 5 66 777 3333333 00 222222 333333333 66 66 4 0 22222 1 55 5 888 5 66 888 0 4 888888888888888888888888888888 33 1 55 4 777 99999 77777777777777777 66 5 77 77 222222222222222222 000 55 5 5 444444 5 5 5 4444444 777 777 4 4 55 4 55 4 4 8 4 3 1111 7777 3 1111111 3 3 55 444444444 555 11 8888888888888 4 111111 4 0 66 22 4 4 4 4 3 66 88 66 44 4 4 4 4 88 6666 55 4 888 1 5 77 5 5 5 4 5 6 6 6 6 99 5 6 99 6 6 666 3 11111111111 111
lowQualScore : . . .. .. .. ..... . . .. . ... . .. . ...... . . . ....... ... . ... .. .. . . . ... . . . ............ . . .. ... ....... .. ...... ......... .. .. . . ..... . .. . ... . .. ... . . .............................. .. . .. . ... ..... ................. .. . .. .. .................. ... .. . . ...... . . . ....... ... ... . . .. . .. . . . . . .... .... . ....... . . .. ......... ... .. ............. . ...... . . .. .. . . . . . .. .. .. .. . . . . .. .... .. . ... . . .. . . . . . . . . . .. . . .. . . ... . ........... ...
lowQualScore : 5 0 00 55 00 00000 0 0 00 0 555 0 55 0 000000 0 0 0 5555555 555 0 555 55 00 3 7 1 888 0 0 0 666666666666 0 0 11 888 9999999 66 000000 444444444 11 11 4 9 44444 7 99 7 888 0 99 888 4 4 111111111111111111111111111111 00 1 55 4 888 22222 00000000000000000 77 7 99 99 111111111111111111 000 99 7 7 666666 7 7 7 4444444 222 888 4 4 55 0 55 0 0 0 0 6 4444 7777 6 8888888 6 6 00 555555555 999 00 6666666666666 0 555555 0 1 33 88 0 4 4 4 6 11 44 99 99 4 4 4 4 44 8888 55 2 888 0 0 55 0 0 7 3 7 7 7 7 7 22 2 7 22 7 7 888 2 88888888888 000
consensus : NNNTAATTAACAAANTCATCATAGTGGTGTGGAATCNGTGATATGCAANATGNTGNNATCTGCCTGGTAATNTGTAGCCAACTTAATTGCCCAAAGTTATNTNTGGACAATGTAGCTCANTGATTTAGGATTTAAATATGATGCAGGGTTACAG-GTGACT---CTC-GAT-AACT-C------------GAA-CTT-CGA--T---C--TC---GAA--GTT-C-C--GATCT--C------T--CGAAGT--GA-AGTC-NC--GGTCCCGAT-TT-TTTTC---TCTA-TA--TA---AGTAAGC-A-A--T---TT--A--T-CTC-GATCTC---TCGAACGTT--CGA-T---CTCTCGAAAGTTCTC---GATCTCTCTCG-AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-TTTCAT--T---G-TTTTTCA-C-TCTCGA-------TCT-C-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGG-C-AA-TTAA-A--G-G-TT-TACAAAGGGAACGCGCCGCCCGCGCT-GCCTTTG-ATA-GGGT-G-GACA--CACAGGTAACGATTT--GATAAGTTTAAT-TGGTCAATTATC-AC-T-TCTCAC-C-CTGAGCA-ATGCG---TTGCNTAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGAAAAACGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCAGC-A-CTAAA
Reference ( family-804 ) : NNNTAATTAACAAANTCATCATAGTGGTGTGGAATCNGTGATATGCAANATGNTGNNATCTGCCTGGTAATNTGTAGCCAACTTAATTGCCCAAAGTTATNTNTGGACAATGTAGCTCANTGATTTAGGATTTAAATATGATGCAGGGTTACAG-GTGACT---CTC-GAT-AACT-C------------GAA-CTT-CGA--T---C--TC---GAA--GTT-C-C--GATCT--C------T--CGAAGT--GA-AGTC-NC--GGTCCCGAT-TT-TTTTC---TCTA-TA--TA---AGTAAGC-A-A--T---TT--A--T-CTC-GATCTC---TCGAACGTT--CGA-T---CTCTCGAAAGTTCTC---GATCTCTCTCG-AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-TTTCAT--T---G-TTTTTCA-C-TCTCGA-------TCT-C-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGG-C-AA-TTAA-A--G-G-TT-TACAAAGGGAACGCGCCGCCCGCGCT-GCCTTTG-ATA-GGGT-G-GACA--CACAGGTAACGATTT--GATAAGTTTAAT-TGGTCAATTATC-AC-T-TCTCAC-C-CTGAGCA-ATGCG---TTGCNTAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGAAAAACGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCAGC-A-CTAAA
gi|1 : TAATTA-CAAAATCATCATAGTGGTGTGGAATCAGTGATATGCAACATGATGTCAT-TGCTTGGTAATGTGTAGTCAA-TTAATTGCCCAAAGTTATTTCTG-----T-TAG---AGTAATTT---ATTT--ATAT--TGTAGGG---CAG-GTG--T---CTC-GATAAACTCC------------GAAGCTT-CGATCT---C--TC---GAA--GTTAT-T--GCTCT--C------TGGCGAAGTAAGA-AGTCGCC--GGTCCCGA--TT-TTTTC---TCTATTAGTTA---AGT-AGCAA-A--G---TT--AACT-CTC-GCTCT----TCGAACGTT--CGA-TTCCCTCTC-AAATTTC------ATCTCTT----AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-TTTCAT--T---G---TTTCA-C-TCTCGA-------TCT---T---CGAGG-TGG-TCGC--AGTAA--T--CACAAA-ACATCAACCAAAG-TGTCTAC-TTAT----TTCCAC----TTGGA-C-------TTACACTG-GACG--CCCGAAAAAAAGACGGG-GTGGGGCTGGCGA----AGG-C-CATTTAA-A--G-A-TTATA-AAAGGGAA--CGTCGCCCGCGCT-GCTTT---ATA--GGT-G-GACA--CAC-GGTAACGATTT--GATTGTTTTAAT-T-GTCAATTATCTACGT-TCTCAC-C-C---GCACATGCGCCTCTGCATAGTTTTCTGA-A--ATAATC-GAC-ACGTGTTATAGAA-TAAAATTTA-GA-T-TGTTTTG--CCGAGATTAT----AGAGCGAATGATTT-GAGACAA---ATTTTGGGTAGAACATT---------ATGTTTTAAAAAATAAATGTTTTTCTA-TTTCCTCAGCGA-CTAAA
gi|10 : tgtA-------TCT-C-T---CGAAG-TGG-TC-T--AG-AG--TA-TACAAA-ATATAAA-CAAAG-TGTCTAA-TTAT----TTCTGCTAAATTGGA-C-------TTAC-CTG-GACG--CCTGA---------GGG-AAGCG--TGGCGA--------------TA-------------ACAAAAGGTATGCGCAGCCCATGC--GGCTTTG-ATA-GGGT-G-G--A--CACAGGTAATGGTtagagacaaataaataatgaaactttcaaatacatcgtattttttttattttattatggacataaagttcgttagctcaatctattacgatgagattgaaggagaaaaaaa
gi|11 : CT---CTC-GAT-G--C-C------------ATA-CTT-CGA--T---C--TATG-GAA--GTT-CTC--GGTCT--C------T--CGGA-T--GG-AAAC-AC--AGCCCC-AT-GT-TTTTC---TTTC-TG--TA---ACTAAGC-ACA--T---T-------------AACTC---TTGAA-GTTCCCGA-T---CTCTCCAA
gi|11 : --T---C--TT---GAA--GTT-C-CC-GATCT--C------T--CCAAGT--AA-AATgtaaaatttgga
gi|12 : ctctcgatgccatacttcgatctatggaagttctcggtctctcggatggaaacacagccccatgtttttctttctgtaactaagcacattaacAAT-TGGTCAATTTTA-AC-C-CTACAC-C-TC-------TGTA---TTGTCTTT-GTT-----A-TATAATCTGGCTA-------T-GAA-TGAAATTTTTGATT-TGTTT------GAAAC--TGACAA------------T-GAGACTG-TAATTTTGAGAAAAttgga
gi|13 : TCTAA-TTAT----TTTCGC----TTGGA-C-------TTAG-TTG-GATG--CCTGA---------GGC-AAGCG--TGGTGATGGCATG-C-AG-TTAA-G--T-G-TT-TAAATAGGGCTCGCATAGCCCATGC--GTCTTTG-taatttagggtct
gi|14 : TTTT---TCTG-TA--TA---AGTAAGC-AGA--T---TT--AC-T-CTT-GGTCTC---TATAACTCC--CGA-T---CTCTTGAAA-TTCTT---GATCTGT---GCAAGTGAA-
gi|15 : GTTACAG-GTGACT---C-C-GAT-AACT-C------------GA---CT-CGA--T---CGTTC---GAA--GTT-CTC--GATCT--C------T--CG-AGT--GA-AG
gi|16 : aaTTG-ATA-GGGT-G-GACA--CA--GGTAACGATTT--GA-AAGTTTAAT-TGGTCAATTATC-AC-T-gtcctc
gi|2 : TAATTAACAAATTCA--ATAGT--TGTAAAATCC-TGA-A---AAGATGCTGAAATCTGCCT---AATTTG--GCCAACTTA------CAAA-TTATGTGTGGACAATGTAGCTCATTGATTTAGGATTTAAATATGATACAGGGTTACAG-GTGCCT---CTC-GAT-AACT-C------------GAA-CTT-CGA--T---C-------AAA--GTT-C-C--GATCT--C------T--CGAAGT--GA-AGTC-CC--GGTCCCGAT-TT-TTTTC----CTA-TA--TA---AGTAAGC-A-A--T---TT--A--T-CTT-GATCTC---TCAAACGTT--CGA-T---CTCTCGAAAGTTCTC---GATCTCTCTCG-AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-CG-TTTCATG-T---T-TTTTTCA-C-TCTCGA-------TCTTC-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGA-CAAA-TTAA-A--A-G-AT-TACAAAGGGAACGCGCTGCCCGC-CT-GCTTTTG-ATATGGGT-G-GACA--CACAGGT-ACGATTT--GATAAGTTTAAT-TGGTCAATTATT-TC-T-TCTCAA-C-CTAAGCA-ATGCG---TTGCATAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTGTTCCAAGGCCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAAGAAAACGTTTTGTGAAACATGTTTTGTAAAATACACATT----TA-T---CTCAGC-ATCTAAA
gi|3 : gtaCAG-GTGACT---CTC-GAT-AACT-CCNNNNNNNNNNNNNN-NNN-NNN--N---N--NN---NAACTGTT-C-G--AGTCT--TCTGTTAT--CGAAGT--GA-A-TC--C--GGTCCGGAT-TTGTTTTC---TCTA-TA--TG---AGTA-GC-A-A--TATTTT--AACTGCTC-GATCT----TGGAACGTT--CGA-T---CTCTTCGAAGTTTTCTTGGA---ATCTCGTAAGTGAA-TTTG-G--G--GTC-G------------------TAA---A--CA-TA-TTTCAT--T---G-TTTTTCA-C-TCTCGA-------TCT-C-T---TGAAGGTGG-TCGT--AG-AG--TA-TACAAA-A--TCAATCAAAG-TGTCTAA-TTGT----TTCCGC----TTGGA-C-------TTAC-CTG-GATG--CCCGA---------GGG--TGCG--TGGCGA----AGG-C-AA-TTAA-A--A-G-TT-TACAAAGGGAACGTGCCGC----GCT-GCTTTTG-A-G-GAGT-G-GGTAAGCACAG-TAA--GTTT--GATA-GTTTAAT-TGGTCA-TTATC-AT-T-CTTCACAC-CTGAGCA-ATGCG---TTGCATAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAAATTAAATTTATGA-TGTGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTTTGAGACGA-TGATTTTGAGAAAAATGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TATT---CTCAGC-A-CTAAA
gi|4 : TACAGCGTGACTTCTCTC-GAT-AACT-CC-----------GAA-CTT-CGA--T---C--TCTTCGAA--GTT-CTC--GATCTTTC------T--CGAAGT--GACAGTC-CC--GGTCCCGATGTT-TTTCC---TCTA-TA--TATAAGGTAAGC-A-AA-T---TT--ACTT-CTCCGA-CTCGGTTCGAACGTT--CGAGT---CTCTCGA--GTTCTC---GATCTC-CTCG-AAGTGAAATTTG-GCGGACTCCCG------------------TAA---AAACACTA-TTTCATAGT---G-TTTTTCA-C-TCTC---------------C---CGAAG-TGGGTCGTTTAG-AGCTTAGTACAAATACATCAA-CAAAG-TGTCGAA-TTACAAAAATCCGC----TTGGAGC-------TTAC-CTGCGACGCCCCCGA---------GGGAGTGCAGTTGGCGA----AGGAC-AA-TTAACA--A-G-TT-TACAAAGGGAACGTG-CGCCCGCGCT-GCCTTTGAATA-GGGTCGCGACA--CA-AGGTAACGATTTTAGAAAAGTTTAA--TGGTCAATTATC-AC-TATTTCAT-CACTGAGAA-TTGTGT--TTGCTTAG-GTTC-GA-GATATAATagagaacaaatatatatataagctttccaatacatgtattttttattttatttatgcacgataaagttcttagtcaatatacctgaggatatgagataaaaaa
gi|5 : T--AG-AG--TA-TACAAA-ACATCAA-CAAAGGTGTCTAACTTATA---CTCCGC----TTG-A-C-------T-AC-CTG-GAC---CCCGA---------GGG-GTGCA--TGGCGA----AGG-C-AA-TTAA-A--A-G-TT-TACAAAGGGAACGTGCCGCCCGCGCT-GC-TTTG-ATA-GGGT-G-GACA--CA--GGTAACGATTT--GA-AAGTTTAAT-TGGTCAATTATC-AC-T-TTTCAT-C-TGAAAGA-ATG-----TTGCTTAG-GTT--GA-G-TATAAT--GACTACGTG-TGT-GGA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGATTCATTTTGAGAAAAATGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCTGC-A-CTAAA
gi|6 : tGACT---CTCAGAT-AACT-C------------GAA-CTTTCGA--T---C--TCTCCGAGT-GTT-T-CTTGATCT--C------T--CGAAGT--GA-AGTC-GCTGGGTCCGAAT-TT-TTTTCTCTTCTA-AA--TA---ACTAAGC-A-AATT---TT--A----CTC-G----------------T--TGA-T---CTCTC---------C---GA-----------AGTGAA--TTG-G--G--TCCCG------------------T-A---AA-CA-TATTTTCAT--T---GTTTTTTCA-CTTCTTGA-------TCT-CGT---CGAAG-TGG-TCGT--AG-AG--TA-TAC-AA-ACATCAA-CAAAG-TGTTTTA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--ACCGA---------GGG-GAGTG--TGGCGA----TGG-C-A---TAG-A--G-GTTT-TACAAAGGGAACGTGCAG-CCGTGCTGGCTTTTG-ATA-GGG--G-GACA---GCAGGTAATGGTTA--AAC-AGTTTAATCTGGTCAATTTTC-AC-T-TCTC-C-C----AGCA-TTGTGT--TTGATTAG-GATCTGGTG-TATAATT-GACTA-GTG-agagaaacaaataatattatgaactatcaatacatgtatttttttattttatttatgcacgataaagtgctagtcaatattacctgaggaataagagaaa
gi|7 : tgataaattactaaggctgCTCGA-------TCT-C-T---CGAAG-TGG-TCGC--GG-AG--TA-C-CGG---TAT--A-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGG-C-AA-TTAA-A--G-T-TT-TACAAAGGGAACGTGCCGCCCGCGCT-G-CTTTG-ATA-GGGT-G-G--A--CACAGGTAACGATTT--AAT-AGTTTAAT-TGGTCAATTATC-AC-T-TCTCA--C-CTGAGCA-ATGTG---TTGTTTGG-GATCCGC-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGGCAATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGACAA
gi|8 : TACAA-GTGTTT---CTC-AGT-GGTT-C------------AAA-CTT-TGA--TTTCC--TC---AAG--GT------------------------CAAAGT--TA-AATC-AT--AGTCCCAAC-TA-TTTTC---TCTG-TA--TA---AATTAAC-A-A----------A--T-CT---AT------TC------T--TGA-T---CTCTGGGAGATTTT------TACCTTGCA-AACTGAA-ATCATG--G--TCCCAATTTTTTTTCCCCCCATATAACTTAG-CA-AA-TCT-AT--TCGAG-TTTTTTATC-TCTTAAAGTGAAATTT-C-TGTGTAAAG-TGT-TGGT--AG-GG--TA-TACATG-CCATCAA-TCAAA-CAAATAA-TTAT----ATCCAC----TTGGA-CCTGGGGATTAC-CTG-GGA-----CAA---------G------CA--TGGCGA----A------A-TTAG-ATAGTG-TT-TACATAGGTAACtaatttagagatgtctcaacgaattccaataaataatatttttt
gi|9 : C-A-G--T---TTTGA--T-CTC-GATCTC---TCGAACGTT--CGa
gi|9 : atcaattcT--CGA-T---CTCTCGAACGTTCGG---G---TCTCTCG-AAGTGAC-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-ATTCAT--T---G-TTTTTCA-C-TCTCGA-------TCT-C-T---CAAAG-TGG-TGGT--AG-AG--TA-AACAAG-ACATCAA-CAAAG-TGGCTAA-TTAT----CTCTGC----TTGGA-C-------TTAT-CTG-GACG--CCTGA---------GGggtctctcgaagtgactttgggtcccgtaaaacataattcattgtttttcactctcgatctctcaaagtggtggtagagtaaacaagacatcaacaaagtggctaattatctctgcttggacttatctggacgcctgagg
blockSeqs : A T . . C A G C AA C . T . C . . G G GACAATG CTC T AGG AA GA T C A TCT A . . CNNNNNNNNNNN . T . TTC TCTTC CT TCTT TCTGTTA . . C GCTG G TG G TCT . . TAA . AATTTACTTCTCCGACTCGGT TG C CC G . GAAAG TCTTGGAATCTCGT AT T CG AC ATTTTTTTTCCCCCCATA CTT AA C T TCGA T T T AGTGAAA TC GTG G G TT . CT G T T G C AAAA TAAA G CTGGGGA . C CC . AGT GT TGGCATGCAG C TAGTG . TG GC A T C C A AG CA TA TA C . . A CA ACTG A T T C . CT T A T C . . A T G TT C A . . T TTC T TATT AT
blockSeqs : T . C . . . . C . . . . TCTCC T CTC TTC . . . AC G T . . . . . . ATATTTTAACTGCTCGATCT AT C . . . CGAAG TCGATCTCTCTCG T . . . . . A . . AGT . . . . CG . . . . . . . . . . . A . . . . . . . AA . AGACAAA . GGT . T TC . . . . A . CA . TA . . . . C CTA A C T A . CT . . . C . . . . . . C . . . . TA T TAT A
blockSeqs : . A . . . . . . . . . TATG . CCC C . . . CC G T . . . . . . GATTTACTCTTGGTCTC CA C . . . GGAGA TCGATCTCCTCG T . . . . . A . . GT . . . . C . . . . . . . . . . . . . . . . . . . AA . AGGACAA . TG . T CT . . . . G . CA . AA . . . . A CTG T C . A . CT . . . C . . . . . . C . . . . TG T TAT A
blockSeqs : . A . . . . . . . . . GTTC . CTC C . . . CC A T . . . . . . GTTTTGATCTCGATCTC GG C . . . GAACG TTGATCTGTGC A . . . . . G . . T . . . . C . . . . . . . . . . . . . . . . . . . GT . AGGCAA . AG . T CT . . . . A . CA . A . . . . T TGA A T . T . CC . . . C . . . . . . A . . . . TG
blockSeqs : . A . . . . . . . . . TT . CTC C . . . AT A T . . . . . . ATTTATCTTGATCTC CG C . . . GAAA TTACCTTGCA T . . . . . A . . T . . . . C . . . . . . . . . . . . . . . . . . . GT . AGGCAA . AG . T CC . . . . A . CA . A . . . . T CTG T T . T . C . . . . . . . . . . . . . . . TG
blockSeqs : T . . . . . . . . . NN . CC C . . . C . C . . . . . . AATTTTACTCG CG . . . . GAG GGGTCTCTCG . . . . . . . . . T . . . . C . . . . . . . . . . . . . . . . . . . GA . AGGCAA . AG . T CT . . . . A . A . C . . . . C TC A T . T . . . . . . .
blockSeqs : . . . . . . . . . TC . CG C . . . . . . . . CATTAACTC C . . . . . CGA . C . . . . . . . . . . . . . . . . . . . GT . TGGCA . AG . . C . . . . . . . . T . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . AATCTAT . . . . . . . . . . . . . . . . . . . . . . . . . . T . AA . GT . . C . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : ** ** ** NC*** T* ** AATTTACTCTCGATCTC************* *** GGAAG TCGATCTCTCG****** C** ********* ** AGGCAA******* CA N* CTG* A* *** ** TG*
originalCons : NNNTAATTAACAAANTCATCATAGTGGTGTGGAATCNGTGATATGCAANATGNTGNNATCTGCCTGGTAATNTGTAGCCAACTTAATTGCCCAAAGTTATNTNTGGACAATGTAGCTCANTGATTTAGGATTTAAATATGATGCAGGGTTACAG-GTGACT---CTC-GAT-AACT-C------------GAA-CTT-CGA--T---C--TC---GAA--GTT-C-C--GATCT--C------T--CGAAGT--GA-AGTC-NC--GGTCCCGAT-TT-TTTTC---TCTA-TA--TA---AGTAAGC-A-A--T---TT--A--T-CTC-GATCTC---TCGAACGTT--CGA-T---CTCTCGAAAGTTCTC---GATCTCTCTCG-AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-TTTCAT--T---G-TTTTTCA-C-TCTCGA-------TCT-C-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGG-C-AA-TTAA-A--G-G-TT-TACAAAGGGAACGCGCCGCCCGCGCT-GCCTTTG-ATA-GGGT-G-GACA--CACAGGTAACGATTT--GATAAGTTTAAT-TGGTCAATTATC-AC-T-TCTCAC-C-CTGAGCA-ATGCG---TTGCNTAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGAAAAACGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCAGC-A-CTAAA
finalCons : NNNTAATTAACAAANTCATCATAGTGGTGTGGAATCNGTGATATGCAANATGNTGNNATCTGCCTGGTAATNTGTAGCCAACTTAATTGCCCAAAGTTATNTNTGGACAATGTAGCTCANTGATTTAGGATTTAAATATGATGCAGGGTTACAG-GTGACT---CTC-GAT-AACT-C------------GAA-CTT-CGA--T---C--TC---GAA--GTT-C-C--GATCT--C------T--CGAAGT--GA-AGTCNC---GGTCCCGAT-TT-TTTTC---TCTA-TA--TA---AGTAAGC-AAATTTACTCTCGATCTC-------------TCGAACGTT--CGA-T---CTCTCGGAAGTTCTCGATCTCTCG------AAGTGAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TA-TTTCAT--T---G-TTTTTCA-C-TCTCGA-------TCTC--T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGAAGGCAA-------TTAA-A--G-G-TT-TACAAAGGGAACGCGCCGCCCGCGCT-GCCTTTG-ATA-GGGT-G-GACA--CACAGGTAACGATTT--GAN-AGTTTAAT-TGGTCAATTATC-AC-T-TCTCAC-CCTG-AGCAA-TGCG---TTGCNTAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGATG-ATTTTGAGAAAAACGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCAGC-A-CTAAA
Alignments
lowQualScore : 1 11 11 11 22222 1 222 11 1 222222 1 3333333 222 222 11 11 333333333333 22222222222222 11 222222 111111111111 11111 11111 11 444444444444444444444444444444444444444444444444 444444444444444444 111111 111111 1111111 1111 1111111 111111111 11 111111 1111 111 22222222222 111
lowQualScore : 5 1 88 77 66 77777 1 1 22 5 000 1 88 5 999999 5 1 1 2222222 000 1 000 88 88 7 6 5 888 5 5 5 000000000000 5 5 66666666666666 11 222222 0 777777777777 66 5 0 22222 1 55 5 11111 66 888 0 5 55 0 8 4 111111111111111111111111111111111111111111111111 4 77 4 4 5 66 77 222222222222222222 333333 5 5 444444 5 5 5 4444444 4 4 777 4 4 55 4 55 4 44 8 4 3 1111 7777 3 1111111 3 3 55 444444444 555 11 8888888888888 4 111111 4 0 66 22 4 4 4 4 3 66 3 888 66 5 4 4 4 4 88 6666 55 4 888 1 5 77 5 5 5 4 5 6 6 6 6 99 5 6 99 6 6 666 3 11111111111 111
lowQualScore : . . .. .. .. ..... . . .. . ... . .. . ...... . . . ....... ... . ... .. .. . . . ... . . . ............ . . .............. .. ...... . ............ .. . . ..... . .. . ..... .. ... . . .. . . . ................................................ . .. . . . .. .. .................. ...... . . ...... . . . ....... . . ... . . .. . .. . .. . . . .... .... . ....... . . .. ......... ... .. ............. . ...... . . .. .. . . . . . .. . ... .. . . . . . .. .... .. . ... . . .. . . . . . . . . . .. . . .. . . ... . ........... ...
lowQualScore : 5 0 00 55 00 00000 0 0 00 0 555 0 55 0 000000 0 0 0 5555555 555 0 555 55 00 3 7 1 888 0 0 0 666666666666 0 0 55555555555555 99 222222 8 222222222222 99 0 2 44444 7 99 7 55555 99 888 4 0 00 1 9 4 222222222222222222222222222222222222222222222222 4 33 4 4 0 99 99 111111111111111111 999999 7 7 666666 7 7 0 4444444 4 4 888 4 4 55 0 55 0 77 0 0 6 4444 7777 6 8888888 6 6 00 555555555 999 00 6666666666666 0 555555 0 1 33 88 0 4 4 4 6 11 9 888 00 0 4 4 4 4 44 8888 55 2 888 0 0 55 0 0 7 3 7 7 7 7 7 22 2 7 22 7 7 888 2 88888888888 000
consensus : NNNTAATTAACAAANTCATCATAGTGGTGTGGAATCNGTGATATGCAANATGNTGNNATCTGCCTGGTAATNTGTAGCCAACTTAATTGCCCAAAGTTATNTNTGGACAATGTAGCTCANTGATTTAGGATTTAAATATGATGCAGGGTTACAG-GTGACT---CTC-GAT-AACT-C------------GAA-CTT-CGA--T---C--TCT--GAA--GTT-CTC--GATCT--C------T--CGAAGT--GA-AGTC-NC--GGTCCCGAT-TT-TTTTCTCT---A-TA--TA---AGTAAGCAA-ATTT--ACT-CTC-GATCTC---TCGAACGTTCGA-T---CTCTC-GAAGTTCTC---GA--TCTC-TCG-AAGT-GAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TATTT-CAT--T---GTTTTT-CA-CT-CTCGA-------TC-TC-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGG-C-AA-TTAA-A--G-G-TT-TACAAAGGGAACGCGCCGCCCGCGCT-GCCTTTG-ATA-GGGT-G-GACA--CACAGGTAACGATTT---GA-NAG-TTTAAT-TGGTCAATTATC-AC-T-TCTCAC-C-CTGAGCA-ATGCG---TTGCNTAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGAAAAACGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCAGC-A-CTAAA
Reference ( family-804 ) : NNNTAATTAACAAANTCATCATAGTGGTGTGGAATCNGTGATATGCAANATGNTGNNATCTGCCTGGTAATNTGTAGCCAACTTAATTGCCCAAAGTTATNTNTGGACAATGTAGCTCANTGATTTAGGATTTAAATATGATGCAGGGTTACAG-GTGACT---CTC-GAT-AACT-C------------GAA-CTT-CGA--T---C--TC---GAA--GTT-C-C--GATCT--C------T--CGAAGT--GA-AGTC-NC--GGTCCCGAT-TT-TTTTCTCT---A-TA--TA---AGTAAGCAA-ATTT--ACT-CTC-GATCTC---TCGAACGTTCGA-T---CTCTCGGAAGTTCTC---GA--TCTC-TCG-AAGT-GAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TATTT-CAT--T---GTTTTT-CA-CT-CTCGA-------TC-TC-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGG-C-AA-TTAA-A--G-G-TT-TACAAAGGGAACGCGCCGCCCGCGCT-GCCTTTG-ATA-GGGT-G-GACA--CACAGGTAACGATTT---GA-NAG-TTTAAT-TGGTCAATTATC-AC-T-TCTCAC-C-CTGAGCA-ATGCG---TTGCNTAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGAAAAACGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCAGC-A-CTAAA
gi|1 : TAATTA-CAAAATCATCATAGTGGTGTGGAATCAGTGATATGCAACATGATGTCAT-TGCTTGGTAATGTGTAGTCAA-TTAATTGCCCAAAGTTATTTCTG-----T-TAG---AGTAATTT---ATTT--ATAT--TGTAGGG---CAG-GTG--T---CTC-GATAAACTCC------------GAAGCTT-CGATCT---C--TC---GAA--GTTAT-T--GCTCT--C------TGGCGAAGTAAGA-AGTCGCC--GGTCCCGA--TT-TTTTCTCT---ATTAGTTA---AGT-AGCAA-AGTTA-ACT-CTC-GCTCT----TCGAACGTTCGA-TTCCCTCTC--AAATT-TC----A--TCTC-TT--AAGT-GAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-TATTT-CAT--T---G--TTT-CA-CT-CTCGA-------TC-T--T---CGAGG-TGG-TCGC--AGTAA--T--CACAAA-ACATCAACCAAAG-TGTCTAC-TTAT----TTCCAC----TTGGA-C-------TTACACTG-GACG--CCCGAAAAAAAGACGGG-GTGGGGCTGGCGA----AGG-C-CATTTAA-A--G-A-TTATA-AAAGGGAA--CGTCGCCCGCGCT-GCTTT---ATA--GGT-G-GACA--CAC-GGTAACGATTT---GA-TTGTTTTAAT-T-GTCAATTATCTACGT-TCTCAC-C-C---GCACATGCGCCTCTGCATAGTTTTCTGA-A--ATAATC-GAC-ACGTGTTATAGAA-TAAAATTTA-GA-T-TGTTTTG--CCGAGATTAT----AGAGCGAATGATTT-GAGACAA---ATTTTGGGTAGAACATT---------ATGTTTTAAAAAATAAATGTTTTTCTA-TTTCCTCAGCGA-CTAAA
gi|10 : tgtA-------TC-TC-T---CGAAG-TGG-TC-T--AG-AG--TA-TACAAA-ATATAAA-CAAAG-TGTCTAA-TTAT----TTCTGCTAAATTGGA-C-------TTAC-CTG-GACG--CCTGA---------GGG-AAGCG--TGGCGA--------------TA-------------ACAAAAGGTATGCGCAGCCCATGC--GGCTTTG-ATA-GGGT-G-G--A--CACAGGTAATGGTtagagacaaataaataatgaaactttcaaatacatcgtattttttttattttattatggacataaagttcgttagctcaatctattacgatgagattgaaggagaaaaaaa
gi|11 : CT---CTC-GAT-G--C-C------------ATA-CTT-CGA--T---C--TATG-GAA--GTT-CTC--GGTCT--C------T--CGGA-T--GG-AAAC-AC--AGCCCC-AT-GT-TTTTCTTT---C-TG--TA---ACTAAGCAC-ATTA--ACT-CTT-G--------------------------------AAGTTCCC---GA--TCTC-TCC-AAGTAAAA-TTTG-G--
gi|12 : AAT-TGGTCAATTTTA-AC-C-CTACAC-C-TC-------TGTA---TTGTCTTT-GTT-----A-TATAATCTGGCTA-------T-GAA-TGAAATTTTTGATT-TGTTT------GAAAC--TGACAA------------T-GAGACTG-TAATTTTGAGAAAAa
gi|13 : TCTAA-TTAT----TTTCGC----TTGGA-C-------TTAG-TTG-GATG--CCTGA---------GGC-AAGCG--TGGTGATGGCATG-C-AG-TTAA-G--T-G-TT-TAAATAGGGCTCGCATAGCCCATGC--GTCTTTG-taatttagggtct
gi|14 : TTTTTCT---G-TA--TA---AGTAAGCAG-ATTT--ACT-CTT-GGTCTC---TATAACTCCCGA-T---CTCTT-GAAATTCTT---GA--TCTG-TGC-AAGT-GAA-
gi|15 : GTTACAG-GTGACT---C-C-GAT-AACT-C------------GA---CT-CGA--T---CGTTC---GAA--GTT-CTC--GATCT--C------T--CG-AGT--GA-AG
gi|16 : aaTTG-ATA-GGGT-G-GACA--C--AGGTAACGATTT---GA-AAG-TTTAAT-TGGTCAATTATC-AC-T-gtcctc
gi|2 : TAATTAACAAATTCA--ATAGT--TGTAAAATCC-TGA-A---AAGATGCTGAAATCTGCCT---AATTTG--GCCAACTTA------CAAA-TTATGTGTGGACAATGTAGCTCATTGATTTAGGATTTAAATATGATACAGGGTTACAG-GTGCCT---CTC-GAT-AACT-C------------GAA-CTT-CGA---------TC---AAA--GTT-C-C--GATCT--C------T--CGAAGT--GA-AGTC-CC--GGTCCCGAT-TT-TTTTC-CT---A-TA--TA---AGTAAGC-A-ATTT--A-T-CTT-GATCTC---TCAAACGTTCGA-T---CTCTCGAAAGTTCTC---GATCTCTC-TCG-AAGT-GAA-TTTG-G--G--TCCCG------------------TAA---AA-CA-CGTTT-CATG-T---TTTTTT-CA-CT-CTCGA-------TCTTC-T---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA-ACATCAA-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGA-CAAA-TTAA-A--A-G-AT-TACAAAGGGAACGCGCTGCCCGC-CT-GCTTTTG-ATATGGGT-G-GACA--CACAGGT-ACGATTT---GATAAG-TTTAAT-TGGTCAATTATT-TC-T-TCTCAA-C-CTAAGCA-ATGCG---TTGCATAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTGTTCCAAGGCCATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAAGAAAACGTTTTGTGAAACATGTTTTGTAAAATACACATT----TA-T---CTCAGC-ATCTAAA
gi|3 : gtaCAG-GTGACT---CTC-GAT-AACT-CCNNNNNNNNNNNNNN-NNN-NNN--N---N--NN---NAACTGTT-C-G--AGTCT--TCTGTTAT--CGAAGT--GA-A-TC--C--GGTCCGGAT-TTGTTTTCTCT---A-TA--TG---AGTA-GCAATATTTTAACTGCTC-GATCT----TGGAACGTTCGA-T---CTCTTCGAAGTTTTCTTGGA---ATC-TCGTAAGT-GAA-TTTG-G--G--GTC-G------------------TAA---A--CA-TATTT-CAT--T---GTTTTT-CA-CT-CTCGA-------TC-TC-T---TGAAGGTGG-TCGT--AG-AG--TA-TACAAA-A--TCAATCAAAG-TGTCTAA-TTGT----TTCCGC----TTGGA-C-------TTAC-CTG-GATG--CCCGA---------GGG--TGCG--TGGCGA----AGG-C-AA-TTAA-A--A-G-TT-TACAAAGGGAACGTGCCGC----GCT-GCTTTTG-A-G-GAGT-G-GGTAAGCACAG-TAA--GTTT---GA-TAG-TTTAAT-TGGTCA-TTATC-AT-T-CTTCACAC-CTGAGCA-ATGCG---TTGCATAG-GTTCTGA-G-TATAATC-GACTACGTG-TAT-GAAATTAAATTTATGA-TGTGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTTTGAGACGA-TGATTTTGAGAAAAATGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TATT---CTCAGC-A-CTAAA
gi|4 : TACAGCGTGACTTCTCTC-GAT-AACT-CC-----------GAA-CTT-CGA--T---C--TCTTCGAA--GTT-CTC--GATCTTTC------T--CGAAGT--GACAGTC-CC--GGTCCCGATGTT-TTTCCTCT---A-TA--TATAAGGTAAGCAA-ATTT--ACTTCTCCGA-CTCGGTTCGAACGTTCGAGT---CTCTCG--AGTTCTC---GA--TCTCCTCG-AAGT-GAAATTTG-GCGGACTCCCG------------------TAA---AAACACTATTT-CATAGT---GTTTTT-CA-CT-CTC---------------C---CGAAG-TGGGTCGTTTAG-AGCTTAGTACAAATACATCAA-CAAAG-TGTCGAA-TTACAAAAATCCGC----TTGGAGC-------TTAC-CTGCGACGCCCCCGA---------GGGAGTGCAGTTGGCGA----AGGAC-AA-TTAACA--A-G-TT-TACAAAGGGAACGTG-CGCCCGCGCT-GCCTTTGAATA-GGGTCGCGACA--CA-AGGTAACGATTTTAGAA-AAG-TTTAA--TGGTCAATTATC-AC-TATTTCAT-CACTGAGAA-TTGTGT--TTGCTTAG-GTTC-GA-GATATAATagagaacaaatatatatataagctttccaatacatgtattttttattttatttatgcacgataaagttcttagtcaatatacctgaggatatgagataaaaaa
gi|5 : T--AG-AG--TA-TACAAA-ACATCAA-CAAAGGTGTCTAACTTATA---CTCCGC----TTG-A-C-------T-AC-CTG-GAC---CCCGA---------GGG-GTGCA--TGGCGA----AGG-C-AA-TTAA-A--A-G-TT-TACAAAGGGAACGTGCCGCCCGCGCT-GC-TTTG-ATA-GGGT-G-GACA--CA--GGTAACGATTT---GA-AAG-TTTAAT-TGGTCAATTATC-AC-T-TTTCAT-C-TGAAAGA-ATG-----TTGCTTAG-GTT--GA-G-TATAAT--GACTACGTG-TGT-GGA-TAAAATTTATGA-T-TGTTTTG--CCGAGACCATG-CAAGAGT--AT-ATTT-GAGACGATTCATTTTGAGAAAAATGTTTTGTGAAACATGTTTTGTAAAATACACGTT----TA-T---CTCTGC-A-CTAAA
gi|6 : tGACT---CTCAGAT-AACT-C------------GAA-CTTTCGA--T---C--TCTCCGAGT-GTT-T-CTTGATCT--C------T--CGAAGT--GA-AGTC-GCTGGGTCCGAAT-TT-TTTTCTCTTCTA-AA--TA---ACTAAGCAA-ATTTT-ACT-------------------CGTT-GA-T---CTCTC-----------------------CG-AAGT-GAA-TT-G-G--G--TCCCG------------------TAA---A--CA-TATTTTCAT--T---GTTTTTTCA-CTTCTTGA-------TC-TCGT---CGAAG-TGG-TCGT--AG-AG--TA-TACAAA--CATCAA-CAAAG-TGTTTTA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--ACCGA---------GGG-GAGTG--TGGCGA----TGG-C-A---TAG-A--G-GTTT-TACAAAGGGAACGTGCAG-CCGTGCTGGCTTTTG-ATA-GGG--G-GACA---GCAGGTAATGGTTA---AA-CAG-TTTAATCTGGTCAATTTTC-AC-T-TCTC-C-C----AGCA-TTGTGT--TTGATTAG-GATCTGGTG-TATAATT-GACTA-GTG-agagaaacaaataatattatgaactatcaatacatgtatttttttattttatttatgcacgataaagtgctagtcaatattacctgaggaataagagaaa
gi|7 : tgataaattactaaggctg-CTCGA-------TC-TC-T---CGAAG-TGG-TCGC--GG-AG--TA-C-CGG---TAT--A-CAAAG-TGTCTAA-TTAT----TTCCGC----TTGGA-C-------TTAC-CTG-GACG--CCCGA---------GGG-GTGCG--TGGCGA----AGG-C-AA-TTAA-A--G-T-TT-TACAAAGGGAACGTGCCGCCCGCGCT-G-CTTTG-ATA-GGGT-G-G--A--CACAGGTAACGATTT---AA-TAG-TTTAAT-TGGTCAATTATC-AC-T-TCTCA--C-CTGAGCA-ATGTG---TTGTTTGG-GATCCGC-G-TATAATC-GACTACGTG-TAT-GAA-TAAAATTTATGA-T-TGTTTTG--CCGAGGCAATG-CAAGAGT--AT-ATTT-GAGACGA-TGATTTTGAGACAA
gi|8 : TACAA-GTGTTT---CTC-AGT-GGTT-C------------AAA-CTT-TGA--TTTCC--TC---AAG--GT------------------------CAAAGT--TA-AATC-AT--AGTCCCAAC-TA-TTTTCTCT---G-TA--TA---AATTAACAA-ATCT--ATT-CTT-GAT-----------------------CTCTGGGAGATTTTT----A--CCTT-GCA-AACT-GAA-ATCATG--G--TCCCAATTTTTTTTCCCCCCATATAACTTAG-CA-AATCT--AT--TCGAGTTTTT-TATCT-CTTAAAGTGAAATT-TC-TGTGTAAAG-TGT-TGGT--AG-GG--TA-TACATG-CCATCAA-TCAAA-CAAATAA-TTAT----ATCCAC----TTGGA-CCTGGGGATTAC-CTG-GGA-----CAA---------G------CA--TGGCGA----A------A-TTAG-ATAGTG-TT-TACATAGGTAACtaatttagagatgtctcaacgaattccaataaataatatttttt
gi|9 : TTT--GAT-CTC-GATCTC---TCGAACGTTCG------------------------GG--TCTC-TCG-AAGT-GAC-TTTG-G--G--TCCCG------------------TAA---AA-CA-TAATT-CAT--T---GTTTTT-CA-CT-CTCGA-------TC-TC-T---CAAAG-TGG-TGGT--AG-AG--TA-AACAAG-ACATCAA-CAAAG-TGGCTAA-TTAT----CTCTGC----TTGGA-C-------TTAT-CTG-GACG--CCTGA---------GGa