lowQualScore : 11 11 11111 2222222 1 3333333 1111 11 11111 11 2222 33 66666 1 2 7777777777777777777777 111 222222 2 222 11 1 111111 11111111 11111 3333 1 333333 11 11 111 666666666666666666666666666666666666666666666 555555555555555555555555555555555555555555555555555555555555555 2222222222222222 1111 1111111 44444444 1111111 11 3333 3333333 111 44444444444444444444444444 11 3 111111 11111 333 999999 22
lowQualScore : 2 3 4 6 6 00 6 6 3 6 6 33 99 8 6 33333 8 0 1 0000000 0 2222222 3 4444 33 33333 88 1111 11 7 55555 6 3 6 5555555555555555555555 111 888888 0 6 2 777 99 6 9 0 999999 99 6 88888888 22222 5 5 7777 7 7 3 333333 7 33 33 444 8 0 999999999999999999999999999999999999999999999 555555555555555555555555555555555555555555555555555555555555555 4 2222222222222222 4 4 3333 2222222 55555555 6666666 5 0 00 5 66 77 6666 1 5 7 7 5555555 5 5 000 5 44444444444444444444444444 3 00 1 77 5 5 9 5 5 2 666666 5 77 5 44444 222 5 77 5 000000 3 5 5 55
lowQualScore : . . . . . .. . . . . . .. .. . . ..... . . . ....... . ....... . .... .. ..... .. .... .. . ..... . . . ...................... ... ...... . . . ... .. . . . ...... .. . ........ ..... . . .... . . . ...... . .. .. ... . . ............................................. ............................................................... . ................ . . .... ....... ........ ....... . . .. . .. .. .... . . . . ....... . . ... . .......................... . .. . .. . . . . . . ...... . .. . ..... ... . .. . ...... . . . ..
lowQualScore : 8 0 8 7 7 22 7 7 5 7 7 88 88 3 7 22222 0 8 8 8888888 0 5555555 2 8888 88 55555 33 7777 77 3 33333 7 3 7 3333333333333333333333 000 888888 0 5 5 555 22 5 8 6 222222 22 7 88888888 00000 7 7 3333 3 3 3 777777 3 33 22 000 0 8 111111111111111111111111111111111111111111111 999999999999999999999999999999999999999999999999999999999999999 4 0000000000000000 4 4 9999 2222222 11111111 2222222 0 4 11 0 99 99 4444 7 7 7 9 9999999 7 7 000 7 77777777777777777777777777 5 77 7 99 7 7 6 7 1 9 444444 7 99 7 33333 333 7 99 7 777777 7 7 7 00
consensus : TTCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AAATAGT-AAATGT-CC-GATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TGTCCGATAAA-GATCGGGATCGA-AGTTCATTT-------TATACCAGC--T-AA--AGTG-GCGGCCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAAAA----CGGCAAAGCAAT-GAAACGGAAATCGG-----AGA-A----TGTA-GTAAG-A-ACTACGA------GGAGAAAAAGAAACCGCCTGG--CTTCAAGGGGCCTGTAGAATTTGGAGACCGTGAC------TTCAGT--TTGAC-TCGG--AAA---ACTT-T---TT-TTATCG-GATAATCCGACATTAGG--TATATACAATGGTTG-CAGAGGAAGGA---ACAAATAAATATCGGATAATGACAGA-CAAGA---GG-AAGAGA---G---TAGAGAGAGAAGTTTAGGT----------------TGAGAGGGA-G---------A-GA-AAGAT-TA-G---AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTT-NTAG-AT------AGT-GAAAAT-GA----GGAC--TNAGGGTGCAAACA-----GAAA-------ATG-AAAGGAGAATTT-AT-GAAC--CTGTAGCTGAAATG--GATCTTGACTGAATA-CANTTAGTTTAT-ATATCGTG-AATAA-AA---TA-TTC--AAA----ACCTT----AAAACCT-AAAGTAAN-GTAATTTTTCCGG--ACTGA-C-AAAATTT-TGTTTGGGCCGA-CAC------T-AT--T-T-----CTAATA-GT-GT--CAG-TCC------AAATGTCTG-A-CACT-TCCAAAAAA
Reference ( gi|2 ) : TTCTTGAAAAGCGTTGATAATGTCG-GATT-ATCCA-AT-AA-AAATAGT-AAATGT-CT-GATACAAGT-TACTAAAT-TGT-C--GGTCCCGA-TGTCCAATAAA-GATTGGGATCGA-AGTTCATTT-------TATACCAGC--T-AA--AGTG-GCGACCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAAAATTAACGGCAAAGCAAT-GAAA-GGAAATC-------AGA-A----TGTACATAAG-A-ACTACGA------GGAG-AAAAGAAACCGCCTG---TTTCAAGGGGCCTGTAGAATTTGGAGACCGTGAC------TTCAGT--TTGAC-TCGG--AAA---ACTT-T---TT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGA---GG-AAGA---------TAGAGAGATAAGTTTAGGT----------------TGAGAGGGA-G---------A-GACAAGAT-TA-----AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTT-ATAA-AT------AGT-GAAAAT-GA----GGAC--TAAGCGTGCAAA-------GAAA-------ATA-AAAGGAGAATTT-AT-GAAC--CTGTAGCTGAAATG--GA----GATTGAATA-CAATTAGTTTATAATATTGTG-AATAA-AA---TA-TTC--AAA----ACCTT----GAAACTTTAAAATAAT-GTAATTTTTCCGG--ACTGA-C-AAATTTT-TGTTTGAGCTGACCAC------T-AT--T-T-----CTAAAT-GT-GT--CAA-TCCAAATGTAAATGTCCG-A-CAC--TCCAAAAAA
gi|4 : TCCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AA--AGTAAAATGTCCC-GATACAAGT-TGCTATAT-TTTCC--GGTCCCGA-TGTCCGATAAA-GATC-GGATCGACAGTTCATTT-------TAT-CCAGC--TAAA--AATG---GGCCTTGTGTCGCATGATGAATTT-CAAAAAACTACGCAAAA--CA--GGCAACGCAAT-GAAA-CGAGTACGGA----AGA-A----TGTA-GTGAG-A-ACTTCAAAACGCTGGAG-AAAA-AAACAGCGTGA--CTACAAGAGGCCTGTAGAATTTGGAG-CCGTGAC------ATCAGT--TTGAC-TCGGGAAAA---ACGT-A---TT-TTATTG-A-------GACATTAAA--TATA-ACAGTGGTTGCCAGAGGAAAG-------AATAAATATC-GATAATGATCGA-CAAGA---GG-AAGA---------TGAAGAG--AGGTTTAGAT----------------TGAAAGGAA-G---------
gi|1 : tTTCTTGAAAAGTGTCGCTTATGTCGCGATTTATCCGGATCAACAAATAGT-AAATGT-CCCGATACAAGTGTACTATAT-TGT-CCCGGTCCCGACTGTCCGATAAAAGATCAGGATTGA-AGTTCATTTGCCTGATCATACAAACCAT-AATGAGTGTGTG-CCATGTGGCCCATAA--AATTTTC--AAAACTT-GCAAAAA----CGG-AAAGCAATAGAAACGGAAATCGGTAAGAAGA-AACCATGTA-GTAAATA-ACTACGA------GGAGAAAAAGAAACCACCTG---CTTCAA-GGGCCTGTAGAAATTGGGG------------------------GAC-TCGG--AGA---ACTTAT---TTATTATCGCGATAATCCGG-ATTA----TA-ATACAATGTTAG-CAGAGGAAGGAAGTACAGATAAACATCGGATAATGACAGACCAATA---GG-AAG-----------AGA-AGAGAAATGTAGGTGAGAAGAAAGAAGAGAGGAGAGAGA-GACGAAAGACA-GACAAGAT-TT-----AGAG-------AC-AGG--AAGGG-G-GGG--G-GGT-AAGAG----GAA-AG------AGT-GGAGAT-TAT---GGA----GAACATG-AAA-------GAAACGAAGCTATA-GGTAGGGAATTT-ATAGGATTACTAAAGTTGAAA
gi|15 : TTCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AATTAGT-AAATGT-CA-GATACAAGT-TACTATAT-TGT-C--GGTCacgatcaaggactaagagtgcaaagaaaatgaaaggagaatttatggaactgtagctgaaatggagagattgattatcaacttgtttttgtgaataaaatattccaaccttaagtaatagtgaactttgcggttactacaatatattgttttgacaactaattatttaatagtggtcagtccaaatgtctgaccacttcaaaaaaattt
gi|3 : TCTTGAAAAGCGTTGATAATGTCG-GATT-ATCCA-AT-AA-AAATAGT-AAATGT-CT-GATACAAGT--ACTAAATATG--C--GGTCCCGA-TGTCCAATAAA-GATTGGGATCGA-AGTTCATTT-------TATACCAGC--T-AA--AGTG-GCGACCATGTGGCCCATGA--AATTT-C--AAAACT--GC-AAAAT--ACGGCAAAGCAAT-GAAACGGAAATC-------AGACA----TGTA-ATAAG-AGACTACGA------GGAGAAAAAAAAACCGCCTG---TTTCAA-GGGCCTGTA-AATTTGGAGACCGTGAC------TTCAGT--TTGAC-TCGG--AAA---ACTT-T---TT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAAT-AATAT-GGATAATGACAG---AAGA---GGAAAGAGAATAG---TAGAGAGATAAG-TTAGGT----------------TGAGAGGGA-G---------A-GACAAGAT-TA-----AAAG-------TG-AAG--AAC-A-G-CTA--T-GGT-GGGAGTT-ATAA-ATA-----AGT---AAAT-GA----GGAC--TAAGC-TGCAAA-------GAAA-------ATA-AAAGGAGAATTTAAT-GAAC--CTGTAGCTGAAAAT--GA----GATTGAATA-CAATTA-TTTATAATATTGTGAAATAA-AA---TA-TTTCAAAA----ACCTT----G-AACTTTAAAATAAT-GTAATTTTTCCGG--ACTGA-C-AAATTTTGTGTTTGAGCTGA-CAC------T-AT--T-T-----CTAATA-GT-GT--C-A-TCCAAATGTAAATGTCCG-A-CACT-TCCAAAAAA
gi|10 : GAAAAGTGTCGGTAATGTCG-GGTT-ATCCG-AT-AA-AAATAGT-AGATGT-CA-AATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TG----ATAA---------ATCGA-AGTTCATTT-------TATACCAGC--T-AA--AATG-GCGGCCATGTGGCCCAa
gi|3 : TAATGTCG-GATT-ATCCG-AT-AA-AAAAAGT----TTT-CC-GAGTCAA----ACTGAA----------GTCACGG-TCTCCAAc
gi|16 : tcttgaaaagcgttgataatgtcggattatccaataaaaatagtaaatgtctgatacaagtactaaatatgcggtcccgatgtccaataaagattgggatcgaagttcattttataccagctaaagtggcgaccatgtggcccatgaaatttcaaaactgcaaaatacggcaaagcaatgaaacggaaatcagacatgtaataagagactacgaggagaaaaaaaaaccgcctgtttcaagggcctgtaaatAG-A-ACTAAGA------GAAG-AAAAGAAACCG-CTGGCATTTCAGACTGCCTGGAAAA-CTGGTGACCGTGGC------TTCAggcctatatacaatggttgcagaggaaggaataaataatatggataatgacagaagaggaaagagaatagtagagagataagttaggttgagagggagagacaagattaaaagtgaagaacagctatggtgggagttataaataagtaaatgaggactaagctgcaaagaaaataaaaggagaatttaatgaacctgtagctgaaaatgagattgaatacaattatttataatattgtgaaataaaatatttcaaaaaccttgaactttaaaataatgtaatttttccggactgacaaattttgtgtttgagctgacactatttctaatagtgtcatccaaatgtaaatgtccgacacttccaaaaaaa
gi|3 : TTGGACATCGGGACCGCATATTTAGTACTTGTA-TCAG--ACATTTACTA-T---TT-TTATTG-GATAATCCGACATTA
gi|10 : tcttgaaaagcgttgaGTAAC------TTGTAT--TTGACATCT---------ACTA-T---TT-TTATCG-GATAACCCGACATTAtaaagattgggatcgaagttcattttataccagctaaagtggcgaccatgtggcccatgaaatttcaaaactgcaaaatacggcaaagcaatgaaacggaaatcagacatgtaataagagactacgaggagaaaaaaaaaccgcctgtttcaagggcctgtaaatttggagaccgtgacttcagtttgactcggaaaactttttttatcggataatccgacattaggcctatatacaatggttgcagaggaaggaataaataatatggataatgacagaagaggaaagagaatagtagagagataagttaggttgagagggagagacaagattaaaagtgaagaacagctatggtgggagttataaataagtaaatgaggactaagctgcaaagaaaataaaaggagaatttaatgaacctgtagctgaaaatgagattgaatacaattatttataatattgtgaaataaaatatttcaaaaaccttgaactttaaaataatgtaatttttccggactgacaaattttgtgtttgagctgacactatttctaatagtgtcatccaaatgtaaatgtccgacacttccaaaaaaa
gi|4 : gaaaagtgtcggCAAC--TTGTA-TCGG--GAC---ATTT-TACTTT-TTATCG-GATAATCCGACATTAtatattgtcggtcccgatgataaatcgaagttcattttataccagctaaaatggcggccatgtggcccac
gi|15 : ttccttgaaaagtgtcgg---TT-TTATCG-GATAATCCGACATTActatattttccggtcccgatgtccgataaagatcggatcgacagttcattttatccagctaaaaatgggccttgtgtcgcatgatgaatttcaaaaaactacgcaaaacaggcaacgcaatgaaacgagtacggaagaatgtagtgagaacttcaaaacgctggagaaaaaaacagcgtgactacaagaggcctgtagaatttggagccgtgacatcagtttgactcgggaaaaacgtattttattgagacattaaatataacagtggttgccagaggaaagaataaatatcgataatgatcgacaagaggaagatgaagagaggtttagattgaaaggaag
gi|1 : ttcttgaaaagtgtcggAAAGACAGA-CAAGATTTAG-A-GA---------CAGGAAGGGGGG---GGGG----------------TAAGAGGAAAG---------A-GTGGAGAT-TATGGAGAACA-------TG-AAAGAAACGAAG-CTA--TAGGTAGGGAATTTATAGGATTACTAAAGTTGAAAAC-GATCAAGGAC--TAAGAGTGCAAA-------GAAA-------ATG-AAAGGAGAATTT-AT-GGAA--CTGTAGCTGAAATGGAGA----GATTGATTATCAACTTGTTT------TTGTG-AATAA-AA---TA-TTC---CA----ACCTT-------------AAGTAATAGTGAACTTTGCGGTTACT-A-C-AATATAT-TGTTT----TGACAAC------TAAT--TAT-----TTAATA-GTGGT--CAG-TCC------AAATGTCTG-ACCAC--TTCAAAAAAttagtaaatgtcagatacaagttactatattgtcggtc
gi|5 : ttcttgaaaagtgtcgcttatgtcgcgatttatccggatcaacaaatagtaaatgtcccgatacaagtgtactatattgtcccggtcccgactgtccgataaaagatcaggattgaagttcatttgcctgatcatacaaaccataatgagtgtgtgccatgtggcccataaaattttcaaaacttgcaaaaacggaaagcaatagaaacggaaatcggtaagaagaaaccatgtagtaaataactacgaggagaaaaagaaaccacctgcttcaagggcctgtagaaattgggggactcggagaacttatttattatcgcgataatccggattataatacaatgttagcagaggaaggaagtacagataaacatcggataatgacagaccaataggaagagaagagaaatgtaggtgagaagaaagaagagaggagagagagacgAGA---GG-AAGAGATATGATGTAGAGAAAGAAGT--AA--------------------AGATGGA-G---------A-GA--------------GAAG-------TGGAAG--AA-AA-G--------GGT-G----TT-TTAT-AT------AGT-GAAAAT-TG----GGAC--TTCGGGTGCAAACAAGAT-GAGA-------ATG-AAAGGAGAATTT-GT-GAAC--TTGTAGCTGAAATG--GATCTTGACTGAATA-CATTTAGTTTAT-----CGTG-AATAA-AA---TACTTT--AAGGTTTATTTA----AAAACCTTAAAGTAAA-GTATTTTTTCCGG--ACTGA-C-AAAATTT-TGTTTGGGCTGA-CACTATTAGT-AT--T-T-----CTAATA-GT-GT--CAG-TCC------AAATGTCTG-A-CACT-TCCAAAAAAattt
gi|7 : agagagaaattgT----------------TGAGAGGAA-A---------ATGA-ATGAT-TAGG---AAAGAAGTAAATG-GAG--AGAGA-G---A----AGT-GGAAG---AAAA-GG------AGT-GAAAAT-TG----GAAC--TTCGGGTGCAAACAGAGATGAGA-------ATGGAAAGGAGAATTT--T-GAAC--TTGTAGCTGAAATG--GATCTTGACTGAATA-CAGTTAGTT------ATCGTG-AATAA-AACAATA-CTT--ATA----A--TA----AAAACCTAAAAGTAAA-GTATTTTTTCCGG--ACTGACC-AAAATTT-TGTTTGGGCCGA-CAC------T-AT--T-T-----CTAATA-GT-GT--CAA-TCC------AAATGTCTG-A-CAC--TTCAAAAAAaattatttcaag
gi|6 : aaaT----------------TGAGAGGAA-----------A-GAGATGATGTAGG---AAAGAAGTAAATG-GAG--GA-GA-G-AGA----AGT-GGAAG---AAAA-GG------AGT-GAAAATTGG----GAAC--TTCGGGTGCAAACAAGAT-GAGA-------ATG-AAAGGAGAATTT--T-GAAC--TTGTAGCTGAAATG--GATCTTGACTGAATA-CATTTAGTT-----TATCGTG-AATAAGAA---TA-CTT--AA--------TTATTAAAAACCTAAAAGTAAA-GT-ATTTTTCCGG--ACTGA-CAAAATTTT-TGTTTGGGCCGA-CAC------T-ATTAT-T-----CTAATA-GT-GT--CAAGTCC------AAATGTCTG-A-CAC--TTCAAAAAAat
gi|18 : a-----AAAG-------TG-AAA--AATGA-G-CTAATT-GGT-GGGAGTT-TTAG-AT------AGT-GAAAAT-GA----GGAa
gi|8 : AA--AATGA-GACTA--T-GGT-GGGAGTT-TTAG-AT------AGT-GAAAAT-GA----GGAC--CA-GAGTGCAA--------GAAA-------ATA-AA-GGAGAATTT-AT-GAAC--CTGTAGGT-AAATG--GA----GATTAAATA-CATTTA-TTTATAAT--TGTG-AATAA-AA---TA-TTC--ACA----ACCT-----GAAA-------GTAAT-GTAATTTTTCCGG--ACTGA-C-AAAATTT-TTTGGGGGCCGA-CAC------T-AT--T-TTAAAATTAAATAGT-GTTACAG-TCC--------ATGTCTGAA-CACTTTCCAAAAAA
gi|11 : agGT-GGGAGTT-TTAG-AT------AGT-TTTCAT-GA----GGAAAATAAGAGTGTAAC--------AAA-------ATA-AAAGGAGAACTT-AT-TAAC--CTGTAGCTGAAATG--GA----GATTGA--------------ATGATATTGTG-AATAA-AA---TA-TTC--AAA----ACCTatgt
gi|14 : TTTTTTCGG--ACTGA-C-AAAATTT-TGTTTGGGCTGA-CAC------T-AT--T-T-----CTAATA-GT-TT--CAG-TCC------AAATGTCTG-A-CACT-TCCAAAAAA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TTAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGAGAATGGGGATATTAA
Unaligned ( gi|12 ): AAGTTTTGTTTTGGTTTGACAAAACTGTGGACTGACACCGGTTGAGTTAGTGTATGTCAGTACGATTGTCTCAGACACTTTAAAACTATTTCAAGAACT
Unaligned ( gi|13 ): CTGGTCTGATGAAACTTTGTCTGGTCTAACAACTTCTAGCTATTCAATACTGTCAGACCGCATGTCTGACTGTGAAATAAGAATTTTGACAACTC
Unaligned ( gi|17 ): AAAAAAAAAAATCAAGAATTTGGATCAAATAAGATTGTGACTGCTATAAACTTGTG
Alignments
lowQualScore : 11 2222222 111 11 1 11 22 222222 1 333333333333333 1 222222 1 22222 1 1 11 1 1 1 3333 1 222222 555555555555 11 33333333333333333333333333 1111111 11 22222222 111111 3333333 11111 3333 444444 111111111 222222222222222 111111111111111 11111111 222222
lowQualScore : 6 6 6 6 6 3 6 6 00 6 6 6 99 8 88 99 8 6666666 0 8 444 8 33 0 33 33 222222 2 0 2 444444444444444 0 8 8 333333 0 0 00000 3 3 6 0 1 33 0 0 0 3 2 4444 3 3 0 222222 3 55 88 6 111111111111 1 44 44 888 5 99999999999999999999999999 6666666 5 66 33 4 66666666 4 0 55 4 555555 4 4 8888 99999 4444444 11111 55 88 9999 5 2 5 333333 5 5 888 5 333333333 1 666666666666666 5 66 0 55 4 4 4 1 4 4 666666666666666 4 55 4 55555555 55 4 4 55 4 333333 55 4 4 4 1
lowQualScore : . . . . . . . . .. . . . .. . .. .. . ....... . . ... . .. . .. .. ...... . . . ............... . . . ...... . . ..... . . . . . .. . . . . . .... . . . ...... . .. .. . ............ . .. .. ... . .......................... ....... . .. .. . ........ . . .. . ...... . . .... ..... ....... ..... .. .. .... . . . ...... . . ... . ......... . ............... . .. . .. . . . . . . ............... . .. . ........ .. . . .. . ...... .. . . . .
lowQualScore : 7 7 7 7 7 5 7 7 33 7 7 7 22 0 88 66 0 0000000 8 0 000 0 88 0 88 88 222222 5 0 5 555555555555555 0 0 0 000000 6 8 66666 2 2 0 6 0 88 0 0 0 2 5 2222 2 2 0 000000 2 00 88 7 555555555555 7 55 11 888 0 66666666666666666666666666 2222222 0 11 11 4 00000000 0 8 00 0 555555 0 0 5555 44444 7777777 11111 33 00 2222 0 8 6 666666 0 0 888 0 999999999 4 111111111111111 7 77 1 55 0 0 0 2 0 0 000000000000000 0 55 0 33333333 55 0 0 55 0 000000 55 0 0 4 1
consensus : TTCTTGAAAAGCGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AAATAGT-AAATGT-CC-GATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TGTCCGATAAA-GATCGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----A-ACGGCAAAGCAAT-GAAACGGAAATCGG-----AGAA----TGTA-GTAAG-A-ACTACGA------GGAGAAAAAGAAACCGCCTGGC--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-AAGAG---A-------TAGAGAGAGAAGTTTAGGTTGAGAGG---GA-GA--------G-A-A-AGATTA----G-AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTTN-TAG-AT------AGT-GAAAAT-GA----GGAC--TNAGGGTGCAAACA----GAAA-----ATG-AAAGGAGAATTT-ATGAACCTGTAGCTGAAATGGATCTTGATTGAATA-CANTTAGTTTAT-ATATCGTG-AATAA-AA---TA-TTC--AAA----ACCTT----AAAAC-C-T-AAA-GTAA-NGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
Reference ( family-801 ) : TTCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AAATAGT-AAATGT-CC-GATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TGTCCGATAAA-GATCGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAGTG---GCG-GCCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----A-ACGGCAAAGCAAT-GAAACGGAAATCGG-----AGAA----TGTA-GTAAG-A-ACTACGA------GGAGAAAAAGAAACCGCCTGGC--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGG--TATATACAATGGTTG-CAGAGGAAGGA---ACAAATAAATATCGGATAATGACAGA-CAAGAGG-AAGAG---A------GTAGAGAGAGAAGTTTAGGTTGAGAGG---GA-GA--------G-A-A-AGATTA----G-AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTTN-TAG-AT------AGT-GAAAAT-GA----GGAC--TNAGGGTGCAAACA----GAAA-----ATG-AAAGGAGAATTT-ATGAACCTGTAGCTGAAATGGATCTTGACTGAATA-CANTTAGTTTAT-ATATCGTG-AATAA-AA---TA-TTC--AAA----ACCTT----AAAAC-C-T-AAA-GTAA-NGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
gi|1 : TTCTTGAAAAGTGTCGCTTATGTCGCGATTTATCCGGATCAACAAATAGT-AAATGT-CCCGATACAAGTGTACTATAT-TGT-CCCGGTCCCGACTGTCCGATAAAAGATCAGGATTGA-AGTTCATTTGCCTGATCATACAAACC-ATAATGAGTGTGTGCCATGTGGCCCATAA--AATTTTC--AAAACTT-GCAAA----A-ACGG-AAAGCAATAGAAACGGAAATCGGTAAGAAGAAACCATGTA-GTAAATA-ACTACGA------GGAGAAAAAGAAACCACCT-GC--TTCAA-GGGCCTGTAGAAATTGGGG----------------GACTCGG--AGAACTTATTTATTATCGCGATAATCCGG-ATTA----TA-ATACAATGTTAG-CAGAGGAAGGAAGTACAGATAAACATCGGATAATGACAGACCAATAGG-AAGAG---A------------AGAGAAATGTAGG-TGAGA-A---GA-AA--------G-A-AGAGAGGA----G-AGAG-------AG-ACG--AA--A-G-ACA----GAC-AAGATTTA-GAG-AC------AG--GAAGGG-GG----GG-------GGGT---AAGA----GGAA-----A-G-AGTGGAGA--TT-ATGGA
gi|1 : AAAGACAGA-CAAGATT-TAGAG---A-------CAGGAAGGGGGG---GGGGTAAGAGG---AAAGA--------GTG-G-AGATTATGGAG-AACA-------TG-AAAGAAACGAAG-CTA--TAGGTAGGGAATTTATAGGATTACTAAAGTTGAAAAC-GATCAAGGAC--TAAGAGTGCAAA------GAAA-----ATG-AAAGGAGAATTT-ATGGAACTGTAGCTGAAATGGAGA--GATTGATTATCAACTTGTTT------TTGTG-AATAA-AA---TA-TTC---CA----ACCTT---------------AA-GTAATAGTGAACTTTGCGGTTACT-AC-AATA-TAT-TGTTT----TGA-CAA--------C------TAAT--TAT---T----T--AATA-GTGGT--C-AGTCC------AAATGTCT--G-ACCAC-TTCAAAAAAAgaacatgaaagaaacgaagctataggtagggaatttataggattactaaagttgaaaacgatcaaggactaagagtgcaaagaaaatgaaaggagaatttatggaactgtagctgaaatggagagattgattatcaacttgtttttgtgaataaaatattccaaccttaagtaatagtgaactttgcggttactacaatatattgttttgacaactaattatttaatagtggtcagtccaaatgtctgaccacttcaaaaaaattt
gi|10 : ttcttgaaaagtgtcgcttatgtcgcgatttatccggatcaacaaatagtaaatgtcccgatacaagtgtactatattgtcccggtcccgactgtccgataaaagatcaggattgaagttcatttgcctgatcatacaaaccataatgagtgtgtgccatgtggcccataaaattttcaaaacttgcaaaaacggaaagcaatagaaacggaaatcggtaagaagaaaccatgtagtaaataactacgaggagaaaaagaaaccacctgcttcaagggcctgtagaaattgggggactcggagaacttatttattatcgcgataatccggattataatacaatgttagcagaggaaggaagtacagataaacatcggataatgacagaccaataggaagagaagagaaatgtaggtgagaagaaagaagagaggagagagagacgGAAAAGTGTCGGTAATGTCG-GGTT-ATCCG-AT-AA-AAATAGT-AGATGT-CA-AATACAAGT-TACTATAT-TGT-C--GGTCCCGA-T----GATAA---------ATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCAttt
gi|11 : GT-GGGAGTTT-TAG-AT------AGT-TTTCAT-GA----GGAAAATAAGAGTGTAA-CA------AA-----ATA-AAAGGAGAACTT-ATTAACCTGTAGCTGAAATGGA----GATTGAATG--------------ATATTGTG-AATAA-AA---TA-TTC--AAA----ACCTc
gi|12 : TTGTTTTGG--TTTGAC-AAAA---C-TG--TGGACTGA-C-A--------C------C-GG--T-TGAGT----T--AGTGTAT-GT--C-AGTAC------GATTGTCTCAG-A-CAC-TTTAAAA
gi|13 : aagttCTGG--TCTGAT-GAAA-CTT-TGTCTGGTCTAA-C-AACTTCTAGC------T-AT--T-C-----------AATA-CT-GT--C-AGACC------GCATGTCT--G-A-Cctatttcaagaact
gi|14 : TTTTTTCGG--ACTGAC-AAAA-TTT-TGTTTGGGCTGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-TT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAAtgtgaaataagaattttgacaactc
gi|15 : TTCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AATTAGT-AAATGT-CA-GATACAAGT-TACTATAT-TGT-C--GGTCattt
gi|16 : AG-A-ACTAAGA------GAAG-AAAAGAAACCG-CTGGCATTTCAGACTGCCTGGAAAA-CTGGTGACCGTGGCTTCA
gi|18 : -AAAG-------TG-AAA--AATGA-G-CTAATT-GGT-GGGAGTTT-TAG-AT------AGT-GAAAAT-GA----GGA
gi|2 : TTCTTGAAAAGCGTTGATAATGTCG-GATT-ATCCA-AT-AA-AAATAGT-AAATGT-CT-GATACAAGT-TACTAAAT-TGT-C--GGTCCCGA-TGTCCAATAAA-GATTGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAGTG---GCG-ACCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAAAATTA-ACGGCAAAGCAAT-GAAA-GGAAATC-------AGAA----TGTACATAAG-A-ACTACGA------GGAG-AAAAGAAACCGCCT-GT--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-AAGA------------TAGAGAGATAAGTTTAGGTTGAGAGG---GA-GA--------G-ACA-AGATTA------AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTTA-TAA-AT------AGT-GAAAAT-GA----GGAC--TAAGCGTGCAA--A----GAAA-----ATA-AAAGGAGAATTT-ATGAACCTGTAGCTGAAATGGA----GATTGAATA-CAATTAGTTTATAATATTGTG-AATAA-AA---TA-TTC--AAA----ACCTT----GAAACTT-T-AAA-ATAA-TGTAATTTTTCCGG--ACTGAC-AAAT-TTT-TGTTTGAGCTGACC-A--------C------T-AT--T-T---C----T--AAAT-GT-GT--C-AATCCAAATGTAAATGTCC--G-A-CAC--TCCAAAAAA
gi|3 : TCTTGAAAAGCGTTGATAATGTCG-GATT-ATCCA-AT-AA-AAATAGT-AAATGT-CT-GATACAAGT--ACTAAATATG--C--GGTCCCGA-TGTCCAATAAA-GATTGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAGTG---GCG-ACCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----ATACGGCAAAGCAAT-GAAACGGAAATCAG-----A-CA----TGTA-ATAAG-AGACTACGA------GGAGAAAAAAAAACCGCCT-GT--TTCAA-GGGCCTGTA-AATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAAT-AATAT-GGATAATGACAG---AAGAGGAAAGAGAATA------GTAGAGAGATAAG-TTAGGTTGAGAGG---GA-GA--------G-ACA-AGATTA------AAAG-------TG-AAG--AAC-A-G-CTA--T-GGT-GGGAGTTA-TAA-ATA-----AGT---AAAT-GA----GGAC--TAA-GCTGCAA--A----GAAA-----ATA-AAAGGAGAATTTAATGAACCTGTAGCTGAAAATGA----GATTGAATA-CAATTA-TTTATAATATTGTGAAATAA-AA---TA-TTTCAAAA----ACCTT----GAACT-T-T-AAA-ATAA-TGTAATTTTTCCGG--ACTGAC-AAAT-TTTGTGTTTGAGCTGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-A-TCCAAATGTAAATGTCC--G-A-CAC-TTCCAAAAAA
gi|4 : TCCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AA--AGTAAAATGTCCC-GATACAAGT-TGCTATAT-TTTCC--GGTCCCGA-TGTCCGATAAA-GATC-GGATCGACAGTTCATTT-------TAT-CCAGCTAAAAATG-----G-GCCTTGTGTCGCATGATGAATTT-CAAAAAACTACGCAAA----A-CAGGCAACGCAAT-GAAACGAGTACGGA-----AGAA----TGTA-GTGAG-A-ACTTCAAAACGCTGGAGAAAA--AAACAGCGTGAC--TACAAGAGGCCTGTAGAATTTGGAG-CCGTGACATCAGTTTGACTCGGGAAAAACGT-ATT-TTATTG-A-------GACATTAAA--TATA-ACAGTGGTTGCCAGAGGAAAG-------AATAAATATC-GATAATGATCGA-CAAGAGG-AAGA------------TGAAGAGAG--GTTTAGATTGAAAGG---AA-Ga
gi|5 : tAGAGG-AAGAG---ATATGATGTAGAGAAAGAAGT--AA----AGATG---GA-GA--------G-A-G-A-------------AG-------TGGAAG--AA-AA-G--------GGT-G----TTT-TAT-AT------AGT-GAAAAT-TG----GGAC--TTCGGGTGCAAACAAGATGAGA-----ATG-AAAGGAGAATTT-GTGAACTTGTAGCTGAAATGGATCTTGACTGAATA-CATTTAGTT-----TATCGTG-AATAA-AA---TACTTT--AAGGTTTATTTA----AAAAC-CTT-AAA-GTAA-AGTATTTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCTGA-C-A--------CTATTAGT-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
gi|6 : agagagaaattgTTGAGAGGAAAGA-GATGATGTAGG-A-A-AGA--A----G-TAAA-------TG-GAG--GA-GA-G-AGA----AGT-GGAAG--A-AAA-GG------AGT-GAAAATTGG----GAAC--TTCGGGTGCAAACAAGATGAGA-----ATG-AAAGGAGAATTT--TGAACTTGTAGCTGAAATGGATCTTGACTGAATA-CATTTAGTT-----TATCGTG-AATAAGAA---TA-CTT--AA--------TTATTAAAAAC-C-TAAAA-GTAA-AGT-ATTTTTCCGG--ACTGAC-AAAATTTT-TGTTTGGGCCGA-C-A--------C------T-ATTAT-T---C----T--AATA-GT-GT--CAAGTCC------AAATGTCT--G-A-CAC-TTCAAAAAAAaattatttcaag
gi|7 : aTTGAGAGG---AA-AAT-------G-A-A-TGATTA----GGAAAGAAGTAAATG-GAG--AGAGA-G---A----AGT-GGAAG--A-AAA-GG------AGT-GAAAAT-TG----GAAC--TTCGGGTGCAAACA----GAGATGAGAATGGAAAGGAGAATTT--TGAACTTGTAGCTGAAATGGATCTTGACTGAATA-CAGTTAGTT------ATCGTG-AATAA-AACAATA-CTT--ATA----A--TA----AAAAC-C-T-AAAAGTAA-AGTATTTTTTCCGG--ACTGACCAAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AATCC------AAATGTCT--G-A-CAC-TTCAAAAAAA
gi|8 : aaaAA--AATGA-GACTA--T-GGT-GGGAGTTT-TAG-AT------AGT-GAAAAT-GA----GGAC---CAGAGTGCAA-------GAAA-----AT--AAAGGAGAATTT-ATGAACCTGTAGGT-AAATGGA----GATTAAATA-CATTTA-TTTAT-A-ATTGTG-AATAA-AA---TA-TTC--ACA----ACCTG----AAA-----------GTAA-TGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TTTGGGGGCCGA-C-A--------C------T-AT--T-T---TAAAATTAAATA-GT-GTTAC-AGTCC--------ATGTCT--GAA-CACTTTCCAAAAAAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGAGAATGGGGATATTAA
Unaligned ( gi|17 ): AAAAAAAAAAATCAAGAATTTGGATCAAATAAGATTGTGACTGCTATAAACTTGTG
Alignments
lowQualScore : 11 2222222 111 11 1 11 22 222222 1 333333333333333 1 222222 1 22222 1 11 1 1 1 1111 1 2222 3333333333333 11 33333333333333333333333333 1111111 11 22222222 111111 3333333 11111 3333 444444 111111111 222222222222222 111111111111111 11111111 222222
lowQualScore : 0 6 6 6 6 6 3 6 6 00 6 6 6 99 8 88 99 8 6666666 0 8 444 8 33 0 33 33 222222 2 0 2 444444444444444 0 8 8 333333 0 0 00000 3 3 6 0 1 33 0 0 0 3 2 8888 3 3 0 0000 0 3 55 88 999 5555555555555 1 44 44 888 5 99999999999999999999999999 6666666 5 66 33 4 66666666 4 0 55 4 555555 4 4 8888 99999 4444444 11111 55 88 9999 5 2 5 333333 5 5 888 5 333333333 1 666666666666666 5 66 0 55 4 4 4 1 4 4 666666666666666 4 55 4 55555555 55 4 4 55 4 333333 55 4 4 4 1
lowQualScore : . . . . . . . . . .. . . . .. . .. .. . ....... . . ... . .. . .. .. ...... . . . ............... . . . ...... . . ..... . . . . . .. . . . . . .... . . . .... . . .. .. ... ............. . .. .. ... . .......................... ....... . .. .. . ........ . . .. . ...... . . .... ..... ....... ..... .. .. .... . . . ...... . . ... . ......... . ............... . .. . .. . . . . . . ............... . .. . ........ .. . . .. . ...... .. . . . .
lowQualScore : 7 7 7 7 7 7 5 7 7 33 7 7 7 22 0 88 66 0 0000000 8 0 000 0 88 0 88 88 222222 5 0 5 555555555555555 0 0 0 000000 6 8 66666 2 2 0 6 0 88 0 0 0 2 5 0000 2 2 0 8888 8 2 00 88 333 0000000000000 7 55 11 888 0 66666666666666666666666666 2222222 0 11 11 4 00000000 0 8 00 0 555555 0 0 5555 44444 7777777 11111 33 00 2222 0 8 6 666666 0 0 888 0 999999999 4 111111111111111 7 77 1 55 0 0 0 2 0 0 000000000000000 0 55 0 33333333 55 0 0 55 0 000000 55 0 0 4 1
consensus : TTCTTGAAAAGCGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AAATAGT-AAATGT-CC-GATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TGTCCGATAAA-GATCGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----A-ACGGCAAAGCAAT-GAAACGGAAATCGG-----AGAA----TGTA-GTAAG-A-ACTACGA------GGAGAAAAAGAAACCGCCTGGC--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-AAGAGA----TA-------GAGAGAGAAGTTTAGGTTGAGAGG---GA-GA--------G-A-A-AGATTA----G-AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTTN-TAG-AT------AGT-GAAAAT-GA----GGAC--TNAGGGTGCAAACA----GAAA-----ATG-AAAGGAGAATTT-ATGAACCTGTAGCTGAAATGGATCTTGATTGAATA-CANTTAGTTTAT-ATATCGTG-AATAA-AA---TA-TTC--AAA----ACCTT----AAAAC-C-T-AAA-GTAA-NGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
Reference ( family-801 ) : TTCTTGAAAAGCGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AAATAGT-AAATGT-CC-GATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TGTCCGATAAA-GATCGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----A-ACGGCAAAGCAAT-GAAACGGAAATCGG-----AGAA----TGTA-GTAAG-A-ACTACGA------GGAGAAAAAGAAACCGCCTGGC--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-AAGAGA----TA-------GAGAGAGAAGTTTAGGTTGAGAGG---GA-GA--------G-A-A-AGATTA----G-AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTTN-TAG-AT------AGT-GAAAAT-GA----GGAC--TNAGGGTGCAAACA----GAAA-----ATG-AAAGGAGAATTT-ATGAACCTGTAGCTGAAATGGATCTTGATTGAATA-CANTTAGTTTAT-ATATCGTG-AATAA-AA---TA-TTC--AAA----ACCTT----AAAAC-C-T-AAA-GTAA-NGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
gi|1 : TTCTTGAAAAGTGTCGCTTATGTCGCGATTTATCCGGATCAACAAATAGT-AAATGT-CCCGATACAAGTGTACTATAT-TGT-CCCGGTCCCGACTGTCCGATAAAAGATCAGGATTGA-AGTTCATTTGCCTGATCATACAAACC-ATAATGAGTGTGTGCCATGTGGCCCATAA--AATTTTC--AAAACTT-GCAAA----A-ACGG-AAAGCAATAGAAACGGAAATCGGTAAGAAGAAACCATGTA-GTAAATA-ACTACGA------GGAGAAAAAGAAACCACCT-GC--TTCAA-GGGCCTGTAGAAATTGGGG----------------GACTCGG--AGAACTTATTTATTATCGCGATAATCCGG-ATTA----TA-ATACAATGTTAG-CAGAGGAAGGAAGTACAGATAAACATCGGATAATGACAGACCAATAGG-AAGAGA----------------AGAGAAATGTAGG-TGAGA-A---GA-AA--------G-A-AGAGAGGA----G-AGAG-------AG-ACG--AA--A-G-ACA----GAC-AAGATTTA-GAG-AC------AG--GAAGGG-GG----GG-------GGGT---AAGA----GGAA-----A-G-AGTGGAGA--TT-ATGGA
gi|1 : AAAGACAGA-CAAGATT-TAGAGA----CA-------GGAAGGGGGG---GGGGTAAGAGG---AAAGA--------GTG-G-AGATTATGGAG-AACA-------TG-AAAGAAACGAAG-CTA--TAGGTAGGGAATTTATAGGATTACTAAAGTTGAAAAC-GATCAAGGAC--TAAGAGTGCAAA------GAAA-----ATG-AAAGGAGAATTT-ATGGAACTGTAGCTGAAATGGAGA--GATTGATTATCAACTTGTTT------TTGTG-AATAA-AA---TA-TTC---CA----ACCTT---------------AA-GTAATAGTGAACTTTGCGGTTACT-AC-AATA-TAT-TGTTT----TGA-CAA--------C------TAAT--TAT---T----T--AATA-GTGGT--C-AGTCC------AAATGTCT--G-ACCAC-TTCAAAAAAAgaacatgaaagaaacgaagctataggtagggaatttataggattactaaagttgaaaacgatcaaggactaagagtgcaaagaaaatgaaaggagaatttatggaactgtagctgaaatggagagattgattatcaacttgtttttgtgaataaaatattccaaccttaagtaatagtgaactttgcggttactacaatatattgttttgacaactaattatttaatagtggtcagtccaaatgtctgaccacttcaaaaaaattt
gi|10 : ttcttgaaaagtgtcgcttatgtcgcgatttatccggatcaacaaatagtaaatgtcccgatacaagtgtactatattgtcccggtcccgactgtccgataaaagatcaggattgaagttcatttgcctgatcatacaaaccataatgagtgtgtgccatgtggcccataaaattttcaaaacttgcaaaaacggaaagcaatagaaacggaaatcggtaagaagaaaccatgtagtaaataactacgaggagaaaaagaaaccacctgcttcaagggcctgtagaaattgggggactcggagaacttatttattatcgcgataatccggattataatacaatgttagcagaggaaggaagtacagataaacatcggataatgacagaccaataggaagagaagagaaatgtaggtgagaagaaagaagagaggagagagagacgGAAAAGTGTCGGTAATGTCG-GGTT-ATCCG-AT-AA-AAATAGT-AGATGT-CA-AATACAAGT-TACTATAT-TGT-C--GGTCCCGA-T----GATAA---------ATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCAttt
gi|11 : GT-GGGAGTTT-TAG-AT------AGT-TTTCAT-GA----GGAAAATAAGAGTGTAA-CA------AA-----ATA-AAAGGAGAACTT-ATTAACCTGTAGCTGAAATGGA----GATTGAATG--------------ATATTGTG-AATAA-AA---TA-TTC--AAA----ACCTc
gi|12 : TTGTTTTGG--TTTGAC-AAAA---C-TG--TGGACTGA-C-A--------C------C-GG--T-TGAGT----T--AGTGTAT-GT--C-AGTAC------GATTGTCTCAG-A-CAC-TTTAAAA
gi|13 : aagttCTGG--TCTGAT-GAAA-CTT-TGTCTGGTCTAA-C-AACTTCTAGC------T-AT--T-C-----------AATA-CT-GT--C-AGACC------GCATGTCT--G-A-Cctatttcaagaact
gi|14 : TTTTTTCGG--ACTGAC-AAAA-TTT-TGTTTGGGCTGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-TT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAAtgtgaaataagaattttgacaactc
gi|15 : TTCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AATTAGT-AAATGT-CA-GATACAAGT-TACTATAT-TGT-C--GGTCattt
gi|16 : AG-A-ACTAAGA------GAAG-AAAAGAAACCG-CTGGCATTTCAGACTGCCTGGAAAA-CTGGTGACCGTGGCTTCA
gi|18 : -AAAG-------TG-AAA--AATGA-G-CTAATT-GGT-GGGAGTTT-TAG-AT------AGT-GAAAAT-GA----GGA
gi|2 : TTCTTGAAAAGCGTTGATAATGTCG-GATT-ATCCA-AT-AA-AAATAGT-AAATGT-CT-GATACAAGT-TACTAAAT-TGT-C--GGTCCCGA-TGTCCAATAAA-GATTGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAGTG---GCG-ACCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAAAATTA-ACGGCAAAGCAAT-GAAA-GGAAATC-------AGAA----TGTACATAAG-A-ACTACGA------GGAG-AAAAGAAACCGCCT-GT--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-A--AGA----TA-------GAGAGATAAGTTTAGGTTGAGAGG---GA-GA--------G-ACA-AGATTA------AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTTA-TAA-AT------AGT-GAAAAT-GA----GGAC--TAAGCGTGCAA--A----GAAA-----ATA-AAAGGAGAATTT-ATGAACCTGTAGCTGAAATGGA----GATTGAATA-CAATTAGTTTATAATATTGTG-AATAA-AA---TA-TTC--AAA----ACCTT----GAAACTT-T-AAA-ATAA-TGTAATTTTTCCGG--ACTGAC-AAAT-TTT-TGTTTGAGCTGACC-A--------C------T-AT--T-T---C----T--AAAT-GT-GT--C-AATCCAAATGTAAATGTCC--G-A-CAC--TCCAAAAAA
gi|3 : TCTTGAAAAGCGTTGATAATGTCG-GATT-ATCCA-AT-AA-AAATAGT-AAATGT-CT-GATACAAGT--ACTAAATATG--C--GGTCCCGA-TGTCCAATAAA-GATTGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAGTG---GCG-ACCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----ATACGGCAAAGCAAT-GAAACGGAAATCAG-----ACA-----TGTA-ATAAG-AGACTACGA------GGAGAAAAAAAAACCGCCTG-T--TTCAAGGG-CCTGTA-AATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAAT-AATAT-GGATAATGACAG---AAGAGGAAAGAGAATAGTA-------GAGAGATAAG-TTAGGTTGAGAGG---GA-GA--------G-ACA-AGATTA------AAAG-------TG-AAG--AAC-A-G-CTA--T-GGT-GGGAGTTA-TAA-ATA-----AGT---AAAT-GA----GGAC--TAA-GCTGCAA--A----GAAA-----ATA-AAAGGAGAATTTAATGAACCTGTAGCTGAAAATGA----GATTGAATA-CAATTA-TTTATAATATTGTGAAATAA-AA---TA-TTTCAAAA----ACCTT----GAACT-T-T-AAA-ATAA-TGTAATTTTTCCGG--ACTGAC-AAAT-TTTGTGTTTGAGCTGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-A-TCCAAATGTAAATGTCC--G-A-CAC-TTCCAAAAAA
gi|4 : TCCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AA--AGTAAAATGTCCC-GATACAAGT-TGCTATAT-TTTCC--GGTCCCGA-TGTCCGATAAA-GATC-GGATCGACAGTTCATTT-------TAT-CCAGCTAAAAATG-----G-GCCTTGTGTCGCATGATGAATTT-CAAAAAACTACGCAAA----A-CAGGCAACGCAAT-GAAACGAGTACGGA-----AGAA----TGTA-GTGAG-A-ACTTCAAAACGCTGGAGAAAA--AAACAGCGTGAC--TACAAGAGGCCTGTAGAATTTGGAG-CCGTGACATCAGTTTGACTCGGGAAAAACGT-ATT-TTATTG-A-------GACATTAAA--TATA-ACAGTGGTTGCCAGAGGAAAG-------AATAAATATC-GATAATGATCGA-CAAGAGG-A--AGA----TG-------AAGAGAG--GTTTAGATTGAAAGG---AA-Ga
gi|5 : tAGAGG-AAGAGA----TATGATGTAGAGAAAGAAGT--AA----AGATG---GA-GA--------G-A-G-A-------------AG-------TGGAAG--AA-AA-G--------GGT-G----TTT-TAT-AT------AGT-GAAAAT-TG----GGAC--TTCGGGTGCAAACAAGATGAGA-----ATG-AAAGGAGAATTT-GTGAACTTGTAGCTGAAATGGATCTTGACTGAATA-CATTTAGTT-----TATCGTG-AATAA-AA---TACTTT--AAGGTTTATTTA----AAAAC-CTT-AAA-GTAA-AGTATTTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCTGA-C-A--------CTATTAGT-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
gi|6 : agagagaaattgTTGAGAGGAAAGA-GATGATGTAGG-A-A-AGA--A----G-TAAA-------TG-GAG--GA-GA-G-AGA----AGT-GGAAG--A-AAA-GG------AGT-GAAAATTGG----GAAC--TTCGGGTGCAAACAAGATGAGA-----ATG-AAAGGAGAATTT--TGAACTTGTAGCTGAAATGGATCTTGACTGAATA-CATTTAGTT-----TATCGTG-AATAAGAA---TA-CTT--AA--------TTATTAAAAAC-C-TAAAA-GTAA-AGT-ATTTTTCCGG--ACTGAC-AAAATTTT-TGTTTGGGCCGA-C-A--------C------T-ATTAT-T---C----T--AATA-GT-GT--CAAGTCC------AAATGTCT--G-A-CAC-TTCAAAAAAAaattatttcaag
gi|7 : aTTGAGAGG---AA-AAT-------G-A-A-TGATTA----GGAAAGAAGTAAATG-GAG--AGAGA-G---A----AGT-GGAAG--A-AAA-GG------AGT-GAAAAT-TG----GAAC--TTCGGGTGCAAACA----GAGATGAGAATGGAAAGGAGAATTT--TGAACTTGTAGCTGAAATGGATCTTGACTGAATA-CAGTTAGTT------ATCGTG-AATAA-AACAATA-CTT--ATA----A--TA----AAAAC-C-T-AAAAGTAA-AGTATTTTTTCCGG--ACTGACCAAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AATCC------AAATGTCT--G-A-CAC-TTCAAAAAAA
gi|8 : aaaAA--AATGA-GACTA--T-GGT-GGGAGTTT-TAG-AT------AGT-GAAAAT-GA----GGAC---CAGAGTGCAA-------GAAA-----AT--AAAGGAGAATTT-ATGAACCTGTAGGT-AAATGGA----GATTAAATA-CATTTA-TTTAT-A-ATTGTG-AATAA-AA---TA-TTC--ACA----ACCTG----AAA-----------GTAA-TGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TTTGGGGGCCGA-C-A--------C------T-AT--T-T---TAAAATTAAATA-GT-GTTAC-AGTCC--------ATGTCT--GAA-CACTTTCCAAAAAAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGAGAATGGGGATATTAA
Unaligned ( gi|17 ): AAAAAAAAAAATCAAGAATTTGGATCAAATAAGATTGTGACTGCTATAAACTTGTG
Alignments
lowQualScore : 11 2222222 111 11 1 11 22 222222 1 333333333333333 1 222222 1 22222 1 11 1 1 1 1111 1 2222 3333333333333 11 33333333333333333333333333 1111111 11 22222222 111111 3333333 11111 3333 444444 111111111 222222222222222 111111111111111 11111111 222222
lowQualScore : 0 6 6 6 6 6 3 6 6 00 6 6 6 99 8 88 99 8 6666666 0 8 444 8 33 0 33 33 222222 2 0 2 444444444444444 0 8 8 333333 0 0 00000 3 3 6 0 1 33 0 0 0 3 2 8888 3 3 0 0000 0 3 55 88 999 5555555555555 1 44 44 888 5 99999999999999999999999999 6666666 5 66 33 4 66666666 4 0 55 4 555555 4 4 8888 99999 4444444 11111 55 88 9999 5 2 5 333333 5 5 888 5 333333333 1 666666666666666 5 66 0 55 4 4 4 1 4 4 666666666666666 4 55 4 55555555 55 4 4 55 4 333333 55 4 4 4 1
lowQualScore : . . . . . . . . . .. . . . .. . .. .. . ....... . . ... . .. . .. .. ...... . . . ............... . . . ...... . . ..... . . . . . .. . . . . . .... . . . .... . . .. .. ... ............. . .. .. ... . .......................... ....... . .. .. . ........ . . .. . ...... . . .... ..... ....... ..... .. .. .... . . . ...... . . ... . ......... . ............... . .. . .. . . . . . . ............... . .. . ........ .. . . .. . ...... .. . . . .
lowQualScore : 7 7 7 7 7 7 5 7 7 33 7 7 7 22 0 88 66 0 0000000 8 0 000 0 88 0 88 88 222222 5 0 5 555555555555555 0 0 0 000000 6 8 66666 2 2 0 6 0 88 0 0 0 2 5 0000 2 2 0 8888 8 2 00 88 333 0000000000000 7 55 11 888 0 66666666666666666666666666 2222222 0 11 11 4 00000000 0 8 00 0 555555 0 0 5555 44444 7777777 11111 33 00 2222 0 8 6 666666 0 0 888 0 999999999 4 111111111111111 7 77 1 55 0 0 0 2 0 0 000000000000000 0 55 0 33333333 55 0 0 55 0 000000 55 0 0 4 1
consensus : TTCTTGAAAAGCGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AAATAGT-AAATGT-CC-GATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TGTCCGATAAA-GATCGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----A-ACGGCAAAGCAAT-GAAACGGAAATCGG-----AGAA----TGTA-GTAAG-A-ACTACGA------GGAGAAAAAGAAACCGCCTGGC--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-AAGAGA----TA-------GAGAGAGAAGTTTAGGTTGAGAGG---GA-GA--------G-A-A-AGATTA----G-AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTTN-TAG-AT------AGT-GAAAAT-GA----GGAC--TNAGGGTGCAAACA----GAAA-----ATG-AAAGGAGAATTT-ATGAACCTGTAGCTGAAATGGATCTTGATTGAATA-CANTTAGTTTAT-ATATCGTG-AATAA-AA---TA-TTC--AAA----ACCTT----AAAAC-C-T-AAA-GTAA-NGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
Reference ( family-801 ) : TTCTTGAAAAGCGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AAATAGT-AAATGT-CC-GATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TGTCCGATAAA-GATCGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----A-ACGGCAAAGCAAT-GAAACGGAAATCGG-----AGAA----TGTA-GTAAG-A-ACTACGA------GGAGAAAAAGAAACCGCCTGGC--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-AAGAGA----TA-------GAGAGAGAAGTTTAGGTTGAGAGG---GA-GA--------G-A-A-AGATTA----G-AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTTN-TAG-AT------AGT-GAAAAT-GA----GGAC--TNAGGGTGCAAACA----GAAA-----ATG-AAAGGAGAATTT-ATGAACCTGTAGCTGAAATGGATCTTGATTGAATA-CANTTAGTTTAT-ATATCGTG-AATAA-AA---TA-TTC--AAA----ACCTT----AAAAC-C-T-AAA-GTAA-NGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
gi|1 : TTCTTGAAAAGTGTCGCTTATGTCGCGATTTATCCGGATCAACAAATAGT-AAATGT-CCCGATACAAGTGTACTATAT-TGT-CCCGGTCCCGACTGTCCGATAAAAGATCAGGATTGA-AGTTCATTTGCCTGATCATACAAACC-ATAATGAGTGTGTGCCATGTGGCCCATAA--AATTTTC--AAAACTT-GCAAA----A-ACGG-AAAGCAATAGAAACGGAAATCGGTAAGAAGAAACCATGTA-GTAAATA-ACTACGA------GGAGAAAAAGAAACCACCT-GC--TTCAA-GGGCCTGTAGAAATTGGGG----------------GACTCGG--AGAACTTATTTATTATCGCGATAATCCGG-ATTA----TA-ATACAATGTTAG-CAGAGGAAGGAAGTACAGATAAACATCGGATAATGACAGACCAATAGG-AAGAGA----------------AGAGAAATGTAGG-TGAGA-A---GA-AA--------G-A-AGAGAGGA----G-AGAG-------AG-ACG--AA--A-G-ACA----GAC-AAGATTTA-GAG-AC------AG--GAAGGG-GG----GG-------GGGT---AAGA----GGAA-----A-G-AGTGGAGA--TT-ATGGA
gi|1 : AAAGACAGA-CAAGATT-TAGAGA----CA-------GGAAGGGGGG---GGGGTAAGAGG---AAAGA--------GTG-G-AGATTATGGAG-AACA-------TG-AAAGAAACGAAG-CTA--TAGGTAGGGAATTTATAGGATTACTAAAGTTGAAAAC-GATCAAGGAC--TAAGAGTGCAAA------GAAA-----ATG-AAAGGAGAATTT-ATGGAACTGTAGCTGAAATGGAGA--GATTGATTATCAACTTGTTT------TTGTG-AATAA-AA---TA-TTC---CA----ACCTT---------------AA-GTAATAGTGAACTTTGCGGTTACT-AC-AATA-TAT-TGTTT----TGA-CAA--------C------TAAT--TAT---T----T--AATA-GTGGT--C-AGTCC------AAATGTCT--G-ACCAC-TTCAAAAAAAgaacatgaaagaaacgaagctataggtagggaatttataggattactaaagttgaaaacgatcaaggactaagagtgcaaagaaaatgaaaggagaatttatggaactgtagctgaaatggagagattgattatcaacttgtttttgtgaataaaatattccaaccttaagtaatagtgaactttgcggttactacaatatattgttttgacaactaattatttaatagtggtcagtccaaatgtctgaccacttcaaaaaaattt
gi|10 : ttcttgaaaagtgtcgcttatgtcgcgatttatccggatcaacaaatagtaaatgtcccgatacaagtgtactatattgtcccggtcccgactgtccgataaaagatcaggattgaagttcatttgcctgatcatacaaaccataatgagtgtgtgccatgtggcccataaaattttcaaaacttgcaaaaacggaaagcaatagaaacggaaatcggtaagaagaaaccatgtagtaaataactacgaggagaaaaagaaaccacctgcttcaagggcctgtagaaattgggggactcggagaacttatttattatcgcgataatccggattataatacaatgttagcagaggaaggaagtacagataaacatcggataatgacagaccaataggaagagaagagaaatgtaggtgagaagaaagaagagaggagagagagacgGAAAAGTGTCGGTAATGTCG-GGTT-ATCCG-AT-AA-AAATAGT-AGATGT-CA-AATACAAGT-TACTATAT-TGT-C--GGTCCCGA-T----GATAA---------ATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCAttt
gi|11 : GT-GGGAGTTT-TAG-AT------AGT-TTTCAT-GA----GGAAAATAAGAGTGTAA-CA------AA-----ATA-AAAGGAGAACTT-ATTAACCTGTAGCTGAAATGGA----GATTGAATG--------------ATATTGTG-AATAA-AA---TA-TTC--AAA----ACCTc
gi|12 : TTGTTTTGG--TTTGAC-AAAA---C-TG--TGGACTGA-C-A--------C------C-GG--T-TGAGT----T--AGTGTAT-GT--C-AGTAC------GATTGTCTCAG-A-CAC-TTTAAAA
gi|13 : aagttCTGG--TCTGAT-GAAA-CTT-TGTCTGGTCTAA-C-AACTTCTAGC------T-AT--T-C-----------AATA-CT-GT--C-AGACC------GCATGTCT--G-A-Cctatttcaagaact
gi|14 : TTTTTTCGG--ACTGAC-AAAA-TTT-TGTTTGGGCTGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-TT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAAtgtgaaataagaattttgacaactc
gi|15 : TTCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AATTAGT-AAATGT-CA-GATACAAGT-TACTATAT-TGT-C--GGTCattt
gi|16 : AG-A-ACTAAGA------GAAG-AAAAGAAACCG-CTGGCATTTCAGACTGCCTGGAAAA-CTGGTGACCGTGGCTTCA
gi|18 : -AAAG-------TG-AAA--AATGA-G-CTAATT-GGT-GGGAGTTT-TAG-AT------AGT-GAAAAT-GA----GGA
gi|2 : TTCTTGAAAAGCGTTGATAATGTCG-GATT-ATCCA-AT-AA-AAATAGT-AAATGT-CT-GATACAAGT-TACTAAAT-TGT-C--GGTCCCGA-TGTCCAATAAA-GATTGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAGTG---GCG-ACCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAAAATTA-ACGGCAAAGCAAT-GAAA-GGAAATC-------AGAA----TGTACATAAG-A-ACTACGA------GGAG-AAAAGAAACCGCCT-GT--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-A--AGA----TA-------GAGAGATAAGTTTAGGTTGAGAGG---GA-GA--------G-ACA-AGATTA------AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTTA-TAA-AT------AGT-GAAAAT-GA----GGAC--TAAGCGTGCAA--A----GAAA-----ATA-AAAGGAGAATTT-ATGAACCTGTAGCTGAAATGGA----GATTGAATA-CAATTAGTTTATAATATTGTG-AATAA-AA---TA-TTC--AAA----ACCTT----GAAACTT-T-AAA-ATAA-TGTAATTTTTCCGG--ACTGAC-AAAT-TTT-TGTTTGAGCTGACC-A--------C------T-AT--T-T---C----T--AAAT-GT-GT--C-AATCCAAATGTAAATGTCC--G-A-CAC--TCCAAAAAA
gi|3 : TCTTGAAAAGCGTTGATAATGTCG-GATT-ATCCA-AT-AA-AAATAGT-AAATGT-CT-GATACAAGT--ACTAAATATG--C--GGTCCCGA-TGTCCAATAAA-GATTGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAGTG---GCG-ACCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----ATACGGCAAAGCAAT-GAAACGGAAATCAG-----ACA-----TGTA-ATAAG-AGACTACGA------GGAGAAAAAAAAACCGCCTG-T--TTCAAGGG-CCTGTA-AATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAAT-AATAT-GGATAATGACAG---AAGAGGAAAGAGAATAGTA-------GAGAGATAAG-TTAGGTTGAGAGG---GA-GA--------G-ACA-AGATTA------AAAG-------TG-AAG--AAC-A-G-CTA--T-GGT-GGGAGTTA-TAA-ATA-----AGT---AAAT-GA----GGAC--TAA-GCTGCAA--A----GAAA-----ATA-AAAGGAGAATTTAATGAACCTGTAGCTGAAAATGA----GATTGAATA-CAATTA-TTTATAATATTGTGAAATAA-AA---TA-TTTCAAAA----ACCTT----GAACT-T-T-AAA-ATAA-TGTAATTTTTCCGG--ACTGAC-AAAT-TTTGTGTTTGAGCTGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-A-TCCAAATGTAAATGTCC--G-A-CAC-TTCCAAAAAA
gi|4 : TCCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AA--AGTAAAATGTCCC-GATACAAGT-TGCTATAT-TTTCC--GGTCCCGA-TGTCCGATAAA-GATC-GGATCGACAGTTCATTT-------TAT-CCAGCTAAAAATG-----G-GCCTTGTGTCGCATGATGAATTT-CAAAAAACTACGCAAA----A-CAGGCAACGCAAT-GAAACGAGTACGGA-----AGAA----TGTA-GTGAG-A-ACTTCAAAACGCTGGAGAAAA--AAACAGCGTGAC--TACAAGAGGCCTGTAGAATTTGGAG-CCGTGACATCAGTTTGACTCGGGAAAAACGT-ATT-TTATTG-A-------GACATTAAA--TATA-ACAGTGGTTGCCAGAGGAAAG-------AATAAATATC-GATAATGATCGA-CAAGAGG-A--AGA----TG-------AAGAGAG--GTTTAGATTGAAAGG---AA-Ga
gi|5 : tAGAGG-AAGAGA----TATGATGTAGAGAAAGAAGT--AA----AGATG---GA-GA--------G-A-G-A-------------AG-------TGGAAG--AA-AA-G--------GGT-G----TTT-TAT-AT------AGT-GAAAAT-TG----GGAC--TTCGGGTGCAAACAAGATGAGA-----ATG-AAAGGAGAATTT-GTGAACTTGTAGCTGAAATGGATCTTGACTGAATA-CATTTAGTT-----TATCGTG-AATAA-AA---TACTTT--AAGGTTTATTTA----AAAAC-CTT-AAA-GTAA-AGTATTTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCTGA-C-A--------CTATTAGT-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
gi|6 : agagagaaattgTTGAGAGGAAAGA-GATGATGTAGG-A-A-AGA--A----G-TAAA-------TG-GAG--GA-GA-G-AGA----AGT-GGAAG--A-AAA-GG------AGT-GAAAATTGG----GAAC--TTCGGGTGCAAACAAGATGAGA-----ATG-AAAGGAGAATTT--TGAACTTGTAGCTGAAATGGATCTTGACTGAATA-CATTTAGTT-----TATCGTG-AATAAGAA---TA-CTT--AA--------TTATTAAAAAC-C-TAAAA-GTAA-AGT-ATTTTTCCGG--ACTGAC-AAAATTTT-TGTTTGGGCCGA-C-A--------C------T-ATTAT-T---C----T--AATA-GT-GT--CAAGTCC------AAATGTCT--G-A-CAC-TTCAAAAAAAaattatttcaag
gi|7 : aTTGAGAGG---AA-AAT-------G-A-A-TGATTA----GGAAAGAAGTAAATG-GAG--AGAGA-G---A----AGT-GGAAG--A-AAA-GG------AGT-GAAAAT-TG----GAAC--TTCGGGTGCAAACA----GAGATGAGAATGGAAAGGAGAATTT--TGAACTTGTAGCTGAAATGGATCTTGACTGAATA-CAGTTAGTT------ATCGTG-AATAA-AACAATA-CTT--ATA----A--TA----AAAAC-C-T-AAAAGTAA-AGTATTTTTTCCGG--ACTGACCAAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AATCC------AAATGTCT--G-A-CAC-TTCAAAAAAA
gi|8 : aaaAA--AATGA-GACTA--T-GGT-GGGAGTTT-TAG-AT------AGT-GAAAAT-GA----GGAC---CAGAGTGCAA-------GAAA-----AT--AAAGGAGAATTT-ATGAACCTGTAGGT-AAATGGA----GATTAAATA-CATTTA-TTTAT-A-ATTGTG-AATAA-AA---TA-TTC--ACA----ACCTG----AAA-----------GTAA-TGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TTTGGGGGCCGA-C-A--------C------T-AT--T-T---TAAAATTAAATA-GT-GTTAC-AGTCC--------ATGTCT--GAA-CACTTTCCAAAAAAt
blockSeqs : . . . . . A A C A . A C . . A TG C . A . . TG . AA AC AATTA C . C GAAGAA C . G AACGCT A GGCAT A A T A T GA . . . A C GGCC T T C A A CG A AAA TATGATGTA G TT GG AAA A TGATGTAGGAAAGAAG AAGTAAA G GA CG A CTAATT A TA G TACTAA T T TCAA AATAA ACAAGAT TGAGA GG AA TCTT . A G TATAAT A G CAA C AAGGTTT C TATTAAAAACCTA A T . C T G T C . ACTTCTAGC . TA . TAAAA TA T . TA A AAATGT CA A . T A
blockSeqs : . . . . . T . . A . . . . . A TG . . . . . . . . . AT C . C AGACA . . . . A GAC G G T A T . . . . A C GGCC T T . A A G A TA ATAGTA A TT GT . . GTGGAGATTATGGAG . . . TG . CTATA . T . A . . . TAA ACAAGAT . G A TCTT . A G TATAAT . . . . CAAAA C TGAAACTTT . T . . . . T . . CTATTAG . . . GAGT . . . . . AAATGT . . . . C
blockSeqs : . . . . . A . . T . . . . . A C . . . . . . . . . A C . . AGAA . . . . . GT G G T A T . . . . . C AA T . . . . C A AA CA A T GT . . TGAATGATTAGG . . . CG . ACTAT . T . . . . . TAA ACA . A A TCTT . T G TATA . . . . AAA C AAAAACCTT . A . . . . T . . C . . . C . . . . . . . . . . C
blockSeqs : . . . . . A . . T . . . . . . . . . . . . . . . . GT G . . . A . A TA A T AT . . GACAAGATTA . . . AG . CTAT . A . . . . . TAA CA . A A . . T G AT . . . . AAA T TGAACTTT . A . . . . T . . C . . . C . . . . . . . . . . C
blockSeqs : . . . . . . . . C . . . . A TG . . . . . GACAAGATTA . . . TG . CTAT . A . . . . . TTC A . A G . . G . T . . . . ATA C AAAAACCT . A . . . . T . . C . . . C . . . . . . . . . . C
blockSeqs : . . GAGA . . . C . AGA . T . . . . . TTC A . G A . . T . T . . . . ACA . GAAA . T . . . . T . . C . . . C . . . . . . . . . . A
blockSeqs : . . . . . A . A . A . . . . . TTC A . G . . . . . . . . . . AA . . . . . C . . C . . . C . . . . . . . . . . A
blockSeqs : . G . . . A . . . . . CA . . . . . . . . C . . C . . . C . . . . . . . . . . C
blockSeqs : . T . . . . . . . . . C . . C . . . . . . . . . . . . .
blockSeqCons : N* ** A* ******* *** A* TA*********** GT TGAAAGATTAG*************** CG CTAT**** TNN** A****** **** T***** ANA****** NAAAACCTT****** N* **
originalCons : TTCTTGAAAAGCGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AAATAGT-AAATGT-CC-GATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TGTCCGATAAA-GATCGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----A-ACGGCAAAGCAAT-GAAACGGAAATCGG-----AGAA----TGTA-GTAAG-A-ACTACGA------GGAGAAAAAGAAACCGCCTGGC--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-AAGAGA----TA-------GAGAGAGAAGTTTAGGTTGAGAGG---GA-GA--------G-A-A-AGATTA----G-AAAG-------TG-AAG--AACGA-G-CTA--T-GGT-GGGAGTTN-TAG-AT------AGT-GAAAAT-GA----GGAC--TNAGGGTGCAAACA----GAAA-----ATG-AAAGGAGAATTT-ATGAACCTGTAGCTGAAATGGATCTTGATTGAATA-CANTTAGTTTAT-ATATCGTG-AATAA-AA---TA-TTC--AAA----ACCTT----AAAAC-C-T-AAA-GTAA-NGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
finalCons : TTCTTGAAAAGCGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AAATAGT-AAATGT-CN-GATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TGTCCGATAAA-GATCGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----A-ACGGCAAAGCAAT-GAAACGGAAATCGG-----AGAA----TGTA-GTAAG-A-ACTACGA------GGAGAAAAAGAAACCGCCTGGC--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-AAGAGATA-----------GAGAGAGAAGTTTAGGTTGAGAGG---GA-GATGAAAGATTAG---------------AAAG-------TG-AAG--AACGA-GCTAT----GGT-GGGAGTTN-TAG-AT------AGT-GAAAAT-GA----GGACTNN--GGGTGCAAA------GAAA-----ATG-AAAGGAGAATTT-ATGAACCTGTAGCTGAAATGGA----GATTGAATA-CANTTAGTTT-----ATCGTG-AATAA-AA---TA-TTCANA------ACCTNAAAACCTT------AAA-GTAAN-GTAATTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGAGAATGGGGATATTAA
Unaligned ( gi|17 ): AAAAAAAAAAATCAAGAATTTGGATCAAATAAGATTGTGACTGCTATAAACTTGTG
Alignments
lowQualScore : 2222222 111 11 1 11 22 222222 1 333333333333333 1 222222 1 22222 1 11 1 1 1 1111 1 2222 3333333333333 11 11 44444444444444444444 11111111 2222222222222 111111 11111 4444444 2222 22222 111111111111111 111111111111111 11111111 222222
lowQualScore : 0 6 6 6 6 6 3 6 6 77 6 6 6 99 8 88 99 8 6666666 0 8 444 8 33 0 33 33 222222 2 0 2 444444444444444 0 8 8 333333 0 0 00000 3 3 6 0 1 33 0 0 0 3 2 8888 3 3 0 0000 0 3 55 88 999 5555555555555 1 00 0 5 888 5 44 00000000000000000000 66666666 66 5555555555555 4 0 55 4 555555 4 4 8888 00000 0000000 55 88 777 66 8888 5 5 2 33333 888 5 5 888 5 999999999999999 33 66 0 55 4 4 4 1 4 4 666666666666666 4 55 4 55555555 55 4 4 55 4 333333 55 4 4 4 1
lowQualScore : . . . . . . . . . .. . . . .. . .. .. . ....... . . ... . .. . .. .. ...... . . . ............... . . . ...... . . ..... . . . . . .. . . . . . .... . . . .... . . .. .. ... ............. . .. . . ... . .. .................... ........ .. ............. . . .. . ...... . . .... ..... ....... .. .. ... .. .... . . . ..... ... . . ... . ............... .. .. . .. . . . . . . ............... . .. . ........ .. . . .. . ...... .. . . . .
lowQualScore : 7 7 7 7 7 7 5 7 7 77 7 7 7 22 0 88 66 0 0000000 8 0 000 0 88 0 88 88 222222 5 0 5 555555555555555 0 0 0 000000 6 8 66666 2 2 0 6 0 88 0 0 0 2 5 0000 2 2 0 8888 8 2 00 88 333 0000000000000 7 77 1 0 888 0 44 77777777777777777777 66666666 11 4444444444444 0 8 00 0 555555 0 0 5555 33333 0000000 33 00 888 11 3333 0 9 5 11111 888 0 0 888 0 111111111111111 33 77 1 55 0 0 0 2 0 0 000000000000000 0 55 0 33333333 55 0 0 55 0 000000 55 0 0 4 1
consensus : TTCTTGAAAAGCGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AAATAGT-AAATGT-CC-GATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TGTCCGATAAA-GATCGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----A-ACGGCAAAGCAAT-GAAACGGAAATCGG-----AGAA----TGTA-GTAAG-A-ACTACGA------GGAGAAAAAGAAACCGCCTGGC--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-AAGAGA----TA-------GAGAGAGAAGTTTAGGTTGAG-AGG---GA-GA-TGA-------AAGATTA----G-AAAG-------TGAAG--AACGA-G-CTA--T-GGT-GGGAGTTN-TAG-AT------AGT-GAAAAT-GA----GGAC--TNAGGGTGCAAA-------GAAAATG-AAAGGAGAATTT-AT---GAACCTGTAGCTGAAATG--GA----GATTGAATA-CANTTAGTT-----TAT---CGTG-AATAA-AA---TA-TTC--AAA----ACCTNAAAACCTTAAAGTAA-NGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
Reference ( family-801 ) : TTCTTGAAAAGCGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AAATAGT-AAATGT-CN-GATACAAGT-TACTATAT-TGT-C--GGTCCCGA-TGTCCGATAAA-GATCGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----A-ACGGCAAAGCAAT-GAAACGGAAATCGG-----AGAA----TGTA-GTAAG-A-ACTACGA------GGAGAAAAAGAAACCGCCTGGC--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-AAGAGA----TA-------GAGAGAGAAGTTTAGGTTGAG-AGG---GA-GA-TGA-------AAGATTA----G-AAAG-------TGAAG--AACGA-G-CTA--T-GGT-GGGAGTTN-TAG-AT------AGT-GAAAAT-GA----GGAC--TNNGGGTGCAAA-------GAAAATG-AAAGGAGAATTT-AT---GAACCTGTAGCTGAAATG--GA----GATTGAATA-CANTTAGTT-----TAT---CGTG-AATAA-AA---TA-TTC--ANA----ACCTNAAAACCTTAAAGTAA-NGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
gi|1 : TTCTTGAAAAGTGTCGCTTATGTCGCGATTTATCCGGATCAACAAATAGT-AAATGT-CCCGATACAAGTGTACTATAT-TGT-CCCGGTCCCGACTGTCCGATAAAAGATCAGGATTGA-AGTTCATTTGCCTGATCATACAAACC-ATAATGAGTGTGTGCCATGTGGCCCATAA--AATTTTC--AAAACTT-GCAAA----A-ACGG-AAAGCAATAGAAACGGAAATCGGTAAGAAGAAACCATGTA-GTAAATA-ACTACGA------GGAGAAAAAGAAACCACCT-GC--TTCAA-GGGCCTGTAGAAATTGGGG----------------GACTCGG--AGAACTTATTTATTATCGCGATAATCCGG-ATTA----TA-ATACAATGTTAG-CAGAGGAAGGAAGTACAGATAAACATCGGATAATGACAGACCAATAGG-AAGAGA----------------AGAGAAATGTAGG-TGAGAAGA---AA-GA-AGA-------GAGG--A----G-AGAG-------AGACG--AA--A-G-ACA----GAC-AAGATTTA-GAG-AC------AG--GAAGGG-GG----GG-------GGGTA-AGA-------GGAAA-G-AGTGGAGA--TT-ATGGAGAACATGAAA--GAAACG--AA----G
gi|1 : AAAGACAGA-CAAGATT-TAGAGA----CA-------GGAAGGGGGG---GGGGTAAG-AGG---AAAGAGTGG-------A-GATTATGGAG-AACA-------TGAAAGAAACGAAG-CTA--TAGGTAGGGAATTTATAGGATTACTAAAGTTGAAAAC-GATCAAGGAC--TAAGAGTGCAAA-------GAAAATG-AAAGGAGAATTT-AT---GGAACTGTAGCTGAAATGGAGA----GATTGATTATCAACTTGTT-----T-T---TGTG-AATAA-AA---TA-TTC----------C-----AACCTT-AAGTAATAGTGAACTTTGCGGTTACT-AC-AATA-TAT-TGTTT----TGA-CAA--------C------TAAT--TAT---T----T--AATA-GTGGT--C-AGTCC------AAATGTCT--G-ACCAC-TTCAAAAAAActataggtagggaatttataggattactaaagttgaaaacgatcaaggactaagagtgcaaagaaaatgaaaggagaatttatggaactgtagctgaaatggagagattgattatcaacttgtttttgtgaataaaatattccaaccttaagtaatagtgaactttgcggttactacaatatattgttttgacaactaattatttaatagtggtcagtccaaatgtctgaccacttcaaaaaaattt
gi|10 : ttcttgaaaagtgtcgcttatgtcgcgatttatccggatcaacaaatagtaaatgtcccgatacaagtgtactatattgtcccggtcccgactgtccgataaaagatcaggattgaagttcatttgcctgatcatacaaaccataatgagtgtgtgccatgtggcccataaaattttcaaaacttgcaaaaacggaaagcaatagaaacggaaatcggtaagaagaaaccatgtagtaaataactacgaggagaaaaagaaaccacctgcttcaagggcctgtagaaattgggggactcggagaacttatttattatcgcgataatccggattataatacaatgttagcagaggaaggaagtacagataaacatcggataatgacagaccaataggaagagaagagaaatgtaggtgagaagaaagaagagaggagagagagacgGAAAAGTGTCGGTAATGTCG-GGTT-ATCCG-AT-AA-AAATAGT-AGATGT-CA-AATACAAGT-TACTATAT-TGT-C--GGTCCCGA-T----GATAA---------ATCGA-AGTTCATTT-------TATACCAGCT-AAAATG---GCG-GCCATGTGGCCCAttt
gi|11 : GT-GGGAGTTT-TAG-AT------AGT-TTTCAT-GA----GGAAAATAAGAGTGTAAC--------AAAATA-AAAGGAGAACTT-AT---TAACCTGTAGCTGAAATG--GA----GATTGAATG--A------------TAT---TGTG-AATAA-AA---TA-TTC--AAA----ACCTc
gi|12 : TTGTTTTGG--TTTGAC-AAAA---C-TG--TGGACTGA-C-A--------C------C-GG--T-TGAGT----T--AGTGTAT-GT--C-AGTAC------GATTGTCTCAG-A-CAC-TTTAAAA
gi|13 : aagttCTGG--TCTGAT-GAAA-CTT-TGTCTGGTCTAA-C-AACTTCTAGC------T-AT--T-C-----------AATA-CT-GT--C-AGACC------GCATGTCT--G-A-Cctatttcaagaact
gi|14 : TTTTTTCGG--ACTGAC-AAAA-TTT-TGTTTGGGCTGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-TT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAAtgtgaaataagaattttgacaactc
gi|15 : TTCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AATTAGT-AAATGT-CA-GATACAAGT-TACTATAT-TGT-C--GGTCattt
gi|16 : AG-A-ACTAAGA------GAAG-AAAAGAAACCG-CTGGCATTTCAGACTGCCTGGAAAA-CTGGTGACCGTGGCTTCA
gi|18 : -AAAG-------TGAAA--AATGA-G-CTAATT-GGT-GGGAGTTT-TAG-AT------AGT-GAAAAT-GA----GGA
gi|2 : TTCTTGAAAAGCGTTGATAATGTCG-GATT-ATCCA-AT-AA-AAATAGT-AAATGT-CT-GATACAAGT-TACTAAAT-TGT-C--GGTCCCGA-TGTCCAATAAA-GATTGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAGTG---GCG-ACCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAAAATTA-ACGGCAAAGCAAT-GAAA-GGAAATC-------AGAA----TGTACATAAG-A-ACTACGA------GGAG-AAAAGAAACCGCCT-GT--TTCAAGGGGCCTGTAGAATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAATAAATATCGGATAATGACAGA-CAAGAGG-A--AGA----TA-------GAGAGATAAGTTTAGGTTGAG-AGG---GA-GA--GAC------AAGATTA------AAAG-------TGAAG--AACGA-G-CTA--T-GGT-GGGAGTTA-TAA-AT------AGT-GAAAAT-GA----GGAC--TAAGCGTGCAAA-------GAAAATA-AAAGGAGAATTT-AT---GAACCTGTAGCTGAAATG--GA----GATTGAATA-CAATTAGTTTATAATAT---TGTG-AATAA-AA---TA-TTC--AAA----ACCTTGAAACTTTAAAATAA-TGTAATTTTTCCGG--ACTGAC-AAAT-TTT-TGTTTGAGCTGACC-A--------C------T-AT--T-T---C----T--AAAT-GT-GT--C-AATCCAAATGTAAATGTCC--G-A-CAC--TCCAAAAAA
gi|3 : TCTTGAAAAGCGTTGATAATGTCG-GATT-ATCCA-AT-AA-AAATAGT-AAATGT-CT-GATACAAGT--ACTAAATATG--C--GGTCCCGA-TGTCCAATAAA-GATTGGGATCGA-AGTTCATTT-------TATACCAGCT-AAAGTG---GCG-ACCATGTGGCCCATGA--AATTT-C--AAAACT--GCAAA----ATACGGCAAAGCAAT-GAAACGGAAATCAG-----ACA-----TGTA-ATAAG-AGACTACGA------GGAGAAAAAAAAACCGCCTG-T--TTCAAGGG-CCTGTA-AATTTGGAGACCGTGACTTCAGTTTGACTCGG--AAAACTT-TTT-TTATCG-GATAATCCGACATTAGGCCTATATACAATGGTTG-CAGAGGAAGGA---ATAAAT-AATAT-GGATAATGACAG---AAGAGGAAAGAGAATAGTA-------GAGAGATAAG-TTAGGTTGAG-AGG---GA-GA--GAC------AAGATTA------AAAG-------TGAAG--AAC-A-G-CTA--T-GGT-GGGAGTTA-TAA-ATA-----AGT---AAAT-GA----GGAC--TAA-GCTGCAAA-------GAAAATA-AAAGGAGAATTTAAT---GAACCTGTAGCTGAAAAT--GA----GATTGAATA-CAATTATTTATAA-TAT---TGTGAAATAA-AA---TA-TTTCAAAA----ACCTT-GAACTTTAAAATAA-TGTAATTTTTCCGG--ACTGAC-AAAT-TTTGTGTTTGAGCTGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-A-TCCAAATGTAAATGTCC--G-A-CAC-TTCCAAAAAA
gi|4 : TCCTTGAAAAGTGTCGGTAATGTCG-GATT-ATCCG-AT-AA-AA--AGTAAAATGTCCC-GATACAAGT-TGCTATAT-TTTCC--GGTCCCGA-TGTCCGATAAA-GATC-GGATCGACAGTTCATTT-------TAT-CCAGCTAAAAATG-----G-GCCTTGTGTCGCATGATGAATTT-CAAAAAACTACGCAAA----A-CAGGCAACGCAAT-GAAACGAGTACGGA-----AGAA----TGTA-GTGAG-A-ACTTCAAAACGCTGGAGAAAA--AAACAGCGTGAC--TACAAGAGGCCTGTAGAATTTGGAG-CCGTGACATCAGTTTGACTCGGGAAAAACGT-ATT-TTATTG-A-------GACATTAAA--TATA-ACAGTGGTTGCCAGAGGAAAG-------AATAAATATC-GATAATGATCGA-CAAGAGG-A--AGA----TG-------AAGAGAG--GTTTAGATTGAA-AGG---AA-Ga
gi|5 : tAGAGG-AAGAGA----TATGATGTAGAGAAAGAAGTAAAGATGGAG-AGA---GA-AG-TGG-------AAGA---------AAAG-----------------------------GGT-G----TTT-TAT-AT------AGT-GAAAAT-TG----GGAC--TTCGGGTGCAAACAAGAT-GAGAATG-AAAGGAGAATTT-GT---GAACTTGTAGCTGAAATG--GATCTTGACTGAATA-CATTTAGTT-----TAT---CGTG-AATAA-AA---TACTTT--AAGGTTTATTTAAAAACCTTAAAGTAA-AGTATTTTTTCCGG--ACTGAC-AAAA-TTT-TGTTTGGGCTGA-C-A--------CTATTAGT-AT--T-T---C----T--AATA-GT-GT--C-AGTCC------AAATGTCT--G-A-CAC-TTCCAAAAAA
gi|6 : agagagaaattgTTGAG-AGGAAAGA-GA-TGATGTAGGAAAGA--A----G-TAAA-------TGGAG--GA-GA-G-AGA----AGT-GGAAG--A-AAA-GG------AGT-GAAAATTGG----GAAC--TTCGGGTGCAAACAAGAT-GAGAATG-AAAGGAGAATTT--T---GAACTTGTAGCTGAAATG--GATCTTGACTGAATA-CATTTAGTT-----TAT---CGTG-AATAAGAA---TA-CTT--AAT----TATTAAAAACCTAAAAGTAA-AGT-ATTTTTCCGG--ACTGAC-AAAATTTT-TGTTTGGGCCGA-C-A--------C------T-ATTAT-T---C----T--AATA-GT-GT--CAAGTCC------AAATGTCT--G-A-CAC-TTCAAAAAAAaattatttcaag
gi|7 : aTTGAG-AGG---AA-AA-TGA-------ATGATTA----GGAAAGAAGTAAATGGAG--AGAGA-G---A----AGT-GGAAG--A-AAA-GG------AGT-GAAAAT-TG----GAAC--TTCGGGTGCAAACAGAGATGAGAATGGAAAGGAGAATTT--T---GAACTTGTAGCTGAAATG--GATCTTGACTGAATA-CAGTTAGTT------AT---CGTG-AATAA-AACAATA-CTT--ATA----A--TAAAAACCTAAAAGTAA-AGTATTTTTTCCGG--ACTGACCAAAA-TTT-TGTTTGGGCCGA-C-A--------C------T-AT--T-T---C----T--AATA-GT-GT--C-AATCC------AAATGTCT--G-A-CAC-TTCAAAAAAA
gi|8 : aaaAA--AATGA-GACTA--T-GGT-GGGAGTTT-TAG-AT------AGT-GAAAAT-GA----GGAC---CAGAGTGCAA--------GAAAAT--AAAGGAGAATTT-AT---GAACCTGTAGGT-AAATG--GA----GATTAAATA-CATTTA-TT-----TATAATTGTG-AATAA-AA---TA-TTC--ACA----ACCTGAAA--------GTAA-TGTAATTTTTCCGG--ACTGAC-AAAA-TTT-TTTGGGGGCCGA-C-A--------C------T-AT--T-T---TAAAATTAAATA-GT-GTTAC-AGTCC--------ATGTCT--GAA-CACTTTCCAAAAAAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGAGAATGGGGATATTAA
Unaligned ( gi|17 ): AAAAAAAAAAATCAAGAATTTGGATCAAATAAGATTGTGACTGCTATAAACTTGTG