lowQualScore : 1 1 33333333333 8888888 3333333333333 8888888888888888888888888888888888 111111 2222222222 222 1111111111111 11111 111111 11111111 1 111 11 111111 111 111111111 1 2222222 1111 111 4444444444444444444444444444444 11 1 2222 99999999999999999999999999999999999999999999999999999 111 22222222222222222222 11111111 33333333333333333333 11111 11 11
lowQualScore : 6 5 5 2 4 6 3 6 66666666666 8888888 1 6 4 1111111111111 0 1111111111111111111111111111111111 888888 8 2222222222 8 555 1 66 55 4444444444444 66 2 4 11111 5 5 888888 5 5 33333333 77 2 7 1 5 5 77 999 7 5 2 99 5 000 5 99 9 00 1 777777 111 555555555 99 6 6 1 6 8 8 6666666 2222 8 444 3 4444444444444444444444444444444 8 0 11 3 6 0000 8 1 00000000000000000000000000000000000000000000000000000 6 111 0 0 5 1 99999 55 33333333333333333333 44444444 66 4 0 33333333333333333333 3 4 4 55555 4 00 00 4 66
lowQualScore : . . . . . . . . ........... ....... . . . ............. . .................................. ...... . .......... . ... . .. .. ............. .. . . ..... . . ...... . . ........ .. . . . . . .. ... . . . .. . ... . .. . .. . ...... ... ......... .. . . . . . . ....... .... . ... . ............................... . . .. . . .... . . ..................................................... . ... . . . . ..... .. .................... ........ .. . . .................... . . . ..... . .. .. . ..
lowQualScore : 0 0 0 5 0 0 0 0 00000000000 0000000 0 0 0 2222222222222 8 2222222222222222222222222222222222 666666 0 0000000000 0 000 6 99 55 2222222222222 55 4 4 99999 0 0 000000 7 7 99999999 11 4 6 6 7 7 99 333 1 7 5 22 7 000 7 22 0 22 0 777777 777 888888888 22 7 7 7 0 0 0 0000000 4444 0 000 8 2222222222222222222222222222222 0 8 00 2 2 2222 0 0 88888888888888888888888888888888888888888888888888888 7 777 1 1 7 7 44444 99 11111111111111111111 55555555 11 0 9 22222222222222222222 2 0 0 55555 4 66 66 4 33
consensus : ATTTCATAGTCTTAACTGGTTAAAGTCTTGTGTTAAGGAAGCGCTGAAGAACCAGTTCGTNCAAGAACGGNACAGCTCTGTAGAAAATTCCACG-ACATGTATTAATTACAGAATTTTTAANACAAATTTTGGTTTNGAAAATTATTT-TT---GAA--TA--TT-GCC-T-G-AA---GATTTAA----GGAT-TAT--A--TTAACTAAAT-T-NCGAAC--CTGTA--ATCAT---CG--TT----TTCC-TGTAGAAAC-TGGTAGATGG-AAC-AA-TA-TTNN-A-AGA-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATTAT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAA-AAT---A-CG--TTTTAANNAAAGGTTTTG-TA--AAAA---TCCCAA--C---ATTATC--AAGTTTA-AT-GAACT-A-ATGA-A-------TACAAAC--AATAT-AG---TAATTTT-------AAAATC------GTT---GGCA--AAGT-TTGTT--AAGAAAATATT-T-AA-TGCTGTCT--G-C------TC---TT--C-CTG-AAT-AATGC-ACTTGTAC-CTATA-C-TAGTTAT-AT---GCTTATTTGTTCT-CAGCACATAC--T--TGTA-TATAT---------GT-TAT-ATNACCCTTA-----C--TTGT--AAT-GATACN-T---TTATATG----AATATTTT-TGT-T-----TGTACCTCAT-GTACCAGTG--ATC--T-GG-TTTTGAGTGAATAA
Reference ( gi|1 ) : ATTTCATAGCCTTAAATGGTTAAAGTGTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAGGAATGGAATAGTATTGTCAATGATTC-GTGTAAATATATTAATTATAGAATTTTCAAAACAAATTTTGGTATAGAAAATTATTTATT---GAA--T---TT-GCC-T-A-AA---GATTTAA----GGAT-TAC--A--TTAGCTAAAT-T-GAGAAC--CTGTA--ATCAT---TG--TT----TTCC-TATAGAAAC-TGGTAGATGG-AAT-AA-TA-TTGA-A-AGA-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATTAT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAA-AAT---A-CA--TTTCAAAAAAAGATTTTG-TA--AAAA---TCCCAA--C---ATGATC--AAGTTTA-AT-GAACT-A-ATGA-A-------TACAAAC--AATAT-AG---TAATTTT-------AAA-TC------ATT---GGCA--AAGT-TTGTT--AAGATAATATT-T-AA-TGCTGTCT--G-C------TC---TT--C-CTA-AAT-AATGC-ACGTGTAC-CTATA-C-TAGTTAT-AT---GCTTATTTGTTCT-CAGCACATAC--T--TGTA-TATAT---------GT-TAT-ATTACCCTTA-----C--TTGT--AAT-GATACT-T---TTATATG----GATATTTT-TGT-T-----TGTACCTCAT-GTACCAGTG--ATC--T-GG-TTTTGAGTGAATAA
gi|23 : ATTTCATAGTCTTAACTGGTTAAAGTCTTGTGTTAAAGAAAAGCTGAAAAACCAATTCGTACAAGAATGGAA
gi|14 : TGTTAAGGAAGCACTGAAGAACCAGTTTGTTCAAGAACGGCACAGCTCTGTAGAAAATTCCACG-ACATGTATTAATTACAGGATTTTTAAGAC-------------GACGATTAT---TT---GAA--TAAATT-ACC-T-A-AAGTTGATATAATTTCGAAC-AACAAA--TCA--TATAC-T-----AC--CTTTG--AT-AT---TG--T----------------AAC-AGGCAGATGG-AAC-AA-TA-TT
gi|4 : tATATATTAATTATAAAAATTTTAACACAAATTTTGGTTTAAAAAAT-ATTTGTT---GA-------------------------TTTAA----GGAT-CAC--G--TTAACTAAATATAGCGATT--TTGTATAATGAT---CGCCTTGAAATTCC-TGTAGAGGC-TGGTAGATGG-A-C-AA-CA-TTAC-A-AGG-AATTTGGGGACA-TGCACAAAGTGTGA---TTG--CA----GTAT--------AGTTTCATTATTTCAC-GG-AGTATAC---ATTT-TTTTTTT-AA--ATCACAGAAA-AAT---A-TA--TCT-AACGAAAGATTTTG-GA--AAGG---CCTCA----------ATT--ACGTTTG-AG-AAGTT-A-ATGA-ATACAAACTACAAAC--AATGT-AA---TATTTTTA------AAA-TC------ATT---TGT---GAGT-TTTTT--
gi|16 : atgtTTACAGAATTTTTAAAAC----TTTGGTTTGGAAACTTATT--TT---GAAAGC---TT-ATC-T-GTGA---AACTC-A----GAAG-TAT--ATTTTAG--AAAT-T-TCGCACTACTATA--ACCAC---CG--CC----TGCC-AGTGGAGAC-TGGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttgttttttgcgctgcttgtttttcctgagcttctacggcacttacacctaacaatacttttattcatttttcaatgcatacttgtacatattttgtgacccttacttacaacctgtatatatttgtttgaccctcatgtaccaataatctagtttaa
gi|2 : atCAAATTTTGGGCTTGAAAAATATTTA-----GAAG-TA--TT-GCC-TTA-AA---AATTTA------GATCTAT--T--TTTCTCAAAT-T-TCGTAC--CACAA--ATCAC---CA--CC----TTCC-AGTAGAGGC-TGGTAGATGG-GCC-AA-TA-TTCT-A-TAT-AATGAAAGGTTT-TGTGTCTTGTGTAA---TGAATTAA-AAG--TTGCGGATGAATTCCATTATA-TAT-GACA--ATAC--AG--T-GCTTTGTCAAATATGAGAAAAG-AAT---A-Ccg
gi|6 : tgtttaattcatcATTATTTTTTCCCAAA--T---GTAGCCGT-G-AA---GATTTAA----GGAT-TAT--A--TTAACTAAAT-T-GAGAAC--GTGCA--ATCAT---CG--TT----TTCC-TAT-----------AGA-----------------------A-AATTTAAGAATA-TGTACAATGGGCAA---GAA--CAA-CAGCATTGGTGATGAATTTCATTTCATTAT-GG-A--ATGT--GATGGGTTTTTTTCAA--AGGACAGCAA-AAT---A-CG--TCTTAATAAAAGGTTTTA-TA--AAAA---ACCCAA--C---ATTATC--AAGTTTA-AT-GAACT-A-ATGA-A-------TACAAAC--AATAT-AG---CAATCTT-------AAAATC------GTT---GGCA--AAGTGTTGTT--A-GA-AACATT-TTAA-TGCTGTCT--G-C------TC---TT--TTCTGTACT-AA------GTGTACATTGTATC-TAGTTAT-AT---GCTTATT-GTTCT-CA-CACATACACT--CGTA-TA-AT---------GTCTAT-ATAACCTTTA-----C--TTGT--AATTGAGACT-T---T-----------ATAT---------------GTACCTCAT-GTACCAGTG--ATT--T-GA-TTTTGAGTGATTAActacacagcaggtactacacaagaccaaatgctgtaaaatttcatgaaattatgtcaaccagtgaggttaaaacactaaaaaaaactttgtatgttcatttccaaaatctatgagtatgtcctccttaacaaattaaaacctacattttgtatttatttatatatcctcccccccccccccccatatcactacatggttttattcgtgtgtgtatttatacttctttctttgtcaaatgtacgtttatttttattcaatgtatacctcatgtaccacagaatgtggtttaagcgaataaatgaactt
gi|26 : AGAAC--CTGTA--ATCAT---CG--TT----TTCC-TATAGAa
gi|5 : GAAC--CTGAA--ATCATCACTG--TT----TTCCATATAGGAACCTGGTCGATGGTAATTAA-TA-TTGACATAGAGAATTTAAGGATAATGTTCAATGTGTAA---TAAA-CAA-CAGAATCGGTGATGAATTTCATAATATTAT-GG-A--A-GT--GATTT-TGTTTTCAAA--ACGACAGCAA-AACATAA-CA--TTTTAATAAAAGGTTTT--TA--GAAAATCTCCCAA--CAGTATTATC--AAGCTTACATCGAACTAA-ATGACA-------TACAAACAAAATATCAGGGTTAATTTTTTCTAAGAAA-TTTTTCAAATTGGGGGCA--AAGT-TTGTTTAAAGAAAATATTCT-AATTGCTGTCT--GTC------TC---TT--C-CT---ATCAATGC-ACTTGTAT-C-----G-TAGTTAT-ATTGAGCTTA-TTGTTC--CAGCACAT-C--T--TGT--TATAT---------AT-AATGAC--CCCTTA-----C--TTGT---AT-GATAC--C---TTATATG----AATATTTT-TGT-T-----TGTA-CTCATCGTACCAGTG--ACC--C-GGTTTTTGAGTGAATAA
gi|7 : C--CTGTA--ATCAT---CG--TT----TTC--TATAGAAAC-TGGTAGATGG-AAT-AAATAATTGA-A-AGA-AATTTAAGGATA-TGTACAATGT-TA----TAA--CAAACAGCATCGGTGATGA-TTTCATTATATTATTGG-A--ATGT--GATTT-TTTTTTCCAA---CGACAGAAA-AAT---A-CA--TTTTAAATAAAGGTTTGG-TAGAAAAA---TCCCAA--C---ATTATCGAAAGTTTA-AT-GA-CTGA-ATGA-A-------TACAAAC--A-TAT-AG---TAATTCT-------AAAATT------ATT---G-CA--AAGT-TTGTT--AAAAAAGTATT-T-AA-TGCTATCT--G-C------T----TT--C-CTA-TA--AATGC-ACTTA------AT--C-TAGTTATGAT---GCTTATTTGTTCT-CAGCACATAC--TGTTGTAATATAT---------GT-TAA-AGTGACCTTA-----A--TTGT--AAT-GATACT-T---T-ATATG----AATATTTT-TGT-T-----TGTACCTCAT-GTACCAGTG--ATC--CGGG-TTTTGAGTGAATatgaattgatgag
gi|19 : TA--ATCAT---TG--AT----TTC--TATAGAAAC-TGATATATGA-AAT-GA-TA-TTCA-A-GGA-AGCTTAAGGACA-TCTA-AATGTGTGA---TTG--CAA-TAGTATATGAGATGAATTcaaatga
gi|10 : aTA--ATCAC---CA--CC----TTCC-TGTTGAAGT-AGGCAGATGG-AAA-AA-CA-CTTT-A-AGA-AATGAACGCTTA-TGTACATTATGCAACTGTAA--C---CAA-ATTGGTGATGAATTTCATTTTATTCT-TG-A--ATGTAAGACTT-T
gi|17 : aaactacGAATTTCATTATATCAT-GG-A--ATGT--GA-TT-TTTTTTTCAA--ACGACGGAAA-AAT---A-CATTTTTTAATAAAAGGTTTTG-T---AAAA---TCCCAA--C---ATTATC--AAGTTTA-AT-GAAgtgtaaattgcgtagagatttttttggtatagaatattgttctgctccaaacaccaaaacattttgtgaaattatgtcttccaaacaccctgtacaagttgaaagaaagttgtgtctttttattacgaaaatcaacaatattgtctgcttgacccctgtactttgtaattatt
gi|11 : GAAATAAT---AATG--TTTCCAATAATAATTTTGATAC-AGAA---TAATAAAAC---ATGACC--AAATATG-AT-TAACT-ACATGT-A-------TA----------AT-AG---TTAT-----------AA-CC------GTT---G-CATCAGGT-CTA----AAGATCATAT----AC-TCCT-TGT--GACAGAATATCGAGTT--C-CTG-ACT-AATGC-ACTTGTAC-CTA-------GTTGT-AT---GCTTATTTGTTCT-CAGCACATAC--T--TGTG-TATAT---------GT-TAT-ATGACCCTTA-----C--TTGT--AAT-GATAC---------------------TTTT-TGT-T-----TGTACCTCAT-GTACCAGTG--ATC--T-GG-TTTTGAGTAAATAA
gi|9 : -TGCTGTCTTTA-C------TC---TTTAC-CTA-AA--AATG---------------A-C-TATGTAC-AT---GTTT-CTTGTTTT---ATATATAC--A--AATA-TACAT---------GT--GT-ATTTCTTTTT-----CCATTGT--AAT--ATACA-TGTATTATACA----AGTAT---------------G-ACCTCAT-GTACCAATT--ATTGAT-GG--TGTGAGTGAATAAatgaattgaatcgagc
gi|4 : ttgcagacgaatttcatttcatattagaatgcaaattagtatgcgctttaagaaaacaatatttttatcctacatgtaggtactgttcaaagccaaatataattagttttcagaattaatgtcttcttcaagcctgtgcatttttataacaaaaatatatgatctagtctgtcctccataacccatgcgtgaaggcctaatctacatctttttGCTGCTT--G-T------TT---TT--C-CTG-AGC---TTCTACG-GCAC-TTACA-CCTAACAAT-AC---TTTTATTCATTTTTCAATGCATAC--T--TGTA-CATAT---------TT-TGT-G--ACCCTTA-----C--TTAC--AA------CC-T---GTATATA----------TT-TGT-T-----TGACCCTCAT-GTACCAATA--ATC--T-AG-TTTagaaacttga
gi|18 : atgtatatattaattataaaaattttaacacaaattttggtttaaaaaatatttgttgatttaaggatcacgttaactaaatatagcgattttgtataatgatcgccttgaaattcctgtagaggctggtagatggacaacattacaaggaatttggggacatgcacaaagtgtgattgcagtatagtttcattatttcacggagtatacattttttttttaaatcacagaaaaatatatctaacgaaagattttggaaaggcctcaattacgtttgagaagttaatgaatacaaactacaaacaatgtaatatttttaaaatcatttgtgagttttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttgttttttgcATTTGTTCT-CAGCACATAC--T--TGTA-TATATACATTGTATGT-TAT-ATGACCTTTATATTAC--TTGT--AAT-GATACG-T---TTATATG----AATATTTT-TGT-T-----TGTACCTCAaa
gi|2 : --TGTG-TGTAT----------T-TAT-ACT-TCTTTC-----T--TTGTCAAAT-G-TACG-T---TTAT------------TTT-TAT-TCAATGTATACCTCAT-GTACCACAGA-ATG--T-GG--TTTAAGCGAATAA
gi|22 : tgtttaattcatccaaattttgggcttgaaaaatatttagaagtattgccttaaaaatttagatctatttttctcaaatttcgtaccacaaatcaccaccttccagtagaggctggtagatgggccaatattctatataatgaaaggttttgtgtcttgtgtaatgaattaaaagttgcggatgaattccattatatatgacaatacagtgctttgtcaaatatgagaaaagaatacctacacagcaggtactacacaagaccaaatgctgtaaaatttcatgaaattatgtcaaccagtgaggttaaaacactaaaaaaaactttgtatgttcatttccaaaatctatgagtatgtcctccttaacaaattaaaacctacattttgtatttatttatatatcctcccccccccccccccatatcactacatggttttattcgGT--AAT-GATACTAT---TTATATG----AATATTTTTTGT-T-----TGTACCTTAT-GTACCAGTG--ATC--T--G-TTTTGAGTGAATAAatgaactt
gi|13 : T-GTTACT-TA--TTCTATGACATGAAATTTC-TGTATAA---TGTTCCCCAT-GTGCCAATGTCATTG-T-GG-TTT-GAGTAAATAAatgaattgaa
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): AAATCACAGGTAATGTTTTAATTAATGCATGTCTGAAAACTTATCTTGAAATCTTACCTGTGAAACTCAGGAGCATATTTTTGAAATTTGGCACTACTAACCACTGCCTGTCGGTGGAGACTGGTCGATGGTTCAGTATACATACATGTATAATGAAAGATTGTGTGTGTTGTGTAATGATAACAAAATAGCAGATGAATGTCATTTTTTTTTTTTGTTAGAATGCAGTGCTTTGTCTACAATAAGAAAAGAATACCTTCAACAAAAATATTGTACTAGACCAAATACTGTGTTTAATGAAATTATGTCGACTAGTAATATTAAAAAACTAAGAAACTGTGGATCTTTATTTTAAAAAAATATGAAAAAGTATGTTCTCCTTAATACAAAATTATTTTTCTATTGTACGTTTTATGTATATTCTATTTCATGTATATATACATGTAGTTTTGTTTGCATACCTACATACACTCTTCGGACGTTATTTGTACTTATAAATGTACCAATTTGATTGTGGTTTGAGAGAATAAATTGAACTGAAT
Unaligned ( gi|8 ): TTCATTATATATACATGTATAAGAAAAACTAGTACGATATAGTACATGTATGACGATTATGACTATTGCTGATTTGCAGAAATACACTTTTCTTATATTGGATAAACCAGTGTTTTCTGATACAAAGAAAGCCATATTGTGCGCGACAAAATGTGATGAAATATGAAATTATGTCAGCCAGTCCCGTGAAAGATTGTGCACGTTTCAGTTACATATATCTGAATAAGGCTGTTCTCCTTAATTAACACAAAACTTCATTTTTGTGTACATATTTATATTTTACTTTGTTTATTTGTATGCCTATATACATGTACATTCCTGTGATTATGCATGTAATTTCTGTATACCGTACCTCATGCACCTCTGTCATTGTGGTTTGAACGAAAAAAAAGAAAAAAAAGAGCAAGAATTGAAAAAAC
Unaligned ( gi|12 ): TATGCGCTTTAAAAAAACAATTTTTACATCCTAGGTACTGTTCAAAGCCAAATATTATAAAATTTTCAGAATTAATGTCTTCTTCAAGTGTTAAAAAACTTAGAAACCTGTGCATGTTTACAACAAAAATATATGATCTAGTCTGACCTCCATAACCTAGGCATGAAGGCCTATACACCTCTTTTGCTTTCTTTTCCTGAAAATGACTATGTATATG
Unaligned ( gi|15 ): TGTGTATCTTTATTTCAAAAATATATGAAAATTATAGTCTGTTTTTCTTTTCTATTAATTGTAACATTTTATGTATATTCATGTATATATTTTATTTATTTCATTTGCATACCTACATATTATGACTCTTCTGACGTTATTTGTACTAATAAATGTAACTTTTGTATTG
Unaligned ( gi|20 ): TTATATATATATACATATGTATTACTTTTTCCATTTTTATATATCATTTGACTTCTTGTACCAATTATTGATGGTACGAGAGAATAAAGAAACTTGAA
Unaligned ( gi|21 ): TACCATATATTTTTTTTTGTTACAACACAGTGCTTTATCTGACATGAGAAAAGAATACCTACACAGCAAATATTGTACAAGTCCAAATA
Unaligned ( gi|24 ): GAAGTTTCGTACCACTAACCATCGCCTGCACGTTGAGACTGGTAAAAGGTTTGGTAT
Unaligned ( gi|25 ): TAGAAACTTGAAATTATGTACTCTTTGTAACAA
Alignments
lowQualScore : 22222 11 1111 111 33333333333333 11111 222222 1111111111111111111 11111 1111111 11 1 111111 2222 1111 111 1 222222222 111 2222222 222222222 2222222222 3333333333333 1 4444444444 222222222222 11111111 111111 11111111111111 11111 11
lowQualScore : 2 2 0 0 0 0 1 0 1 4 3 4 11111 2 0 11 8 11 6666 111 4 3 22222222222222 77777 0 555 77 3 444444 5 777 55 44 0000000000000000000 44 3 3 3 00000 4 4 0000000 55 4 4 4 4 777 0 00 4 0 6 2 222222 4 4 66 66 3 4 2 66 888 1111 5 22 0 66 1111 888 222 5 5 1 333333333 99 1 6 111 0000000 4 666666666 1 6 9999999999 99 0 8 6 77 5 5 66 3333333333333 0 0 5 5 6666666666 5 2 5 888 3 4 4 66 55 4 4 222222222222 4 7777 3 11111111 66666 999999 44444444444444 3 3 22222 555 3 55 88 22 3 88
lowQualScore : . . . . . . . . . . . . ..... . . .. . .. .... ... . . .............. ..... . ... .. . ...... . ... .. .. ................... .. . . . ..... . . ....... .. . . . . ... . .. . . . . ...... . . .. .. . . . .. ... .... . .. . .. .... ... ... . . . ......... .. . . ... ....... . ......... . . .......... .. . . . .. . . .. ............. . . . . .......... . . . ... . . . .. .. . . ............ . .... . ........ ..... ...... .............. . . ..... ... . .. .. .. . ..
lowQualScore : 5 5 7 7 7 7 0 7 0 0 0 0 55555 5 7 00 0 88 5555 777 3 3 99999999999999 77777 4 999 00 9 333333 7 444 55 66 0000000000000000000 66 3 8 6 22222 0 0 0000000 66 4 4 4 4 888 1 66 4 2 4 1 888888 4 4 11 11 6 4 5 99 888 4444 0 00 2 99 4444 888 555 0 0 4 333333333 22 7 7 777 8888888 8 777777777 0 7 2222222222 22 8 0 7 99 7 0 99 9999999999999 0 2 0 0 1111111111 0 4 0 888 6 4 7 11 55 0 0 444444444444 0 5555 0 22222222 22222 333333 00000000000000 3 3 99999 888 6 00 66 33 6 00
consensus : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAAATTTTG---GTCTGGAAAATTATTT-TN----AAAT--NTTGCC-T-G-AAGATTTAAGGAT-TATATTANCT--AAAT-TT-CGAAC--CTGTA--ATCAT------C---G--TT----T--TCC-TGTAGAAAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AGA-A-ATTTAAGGAT-A-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATCATT---------GGCAAAGT-TTG----------TT--AAAAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCTG-AA----T----AA-TGCAC-T-TGTACCTAT-C--TA-GTTAT-AT---GCTTATT-TGTTCTCAGCACAT--ACT--TG-TA-TATAT---------GT-TATA-T-GA-CCCTTA-----C--TTGT--AA-TGATACN-T---TTATATGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
Reference ( family-75 ) : ATTTCATAGTCTTAACTGGTTAAAGTCTTGTGTTAAGGAAGCGCTGAAGAACCAGTTCGTNCAAGAACGGNACAGCTCTGTAGAAAATTCCACG-ACATGTATTAATTACAG--AAT-TTTTAANACAAATTTTG---GTTTNGAAAATTATTT-TT----GAAT--ATTGCC-T-G-AAGATTTAAGGAT-TATATTAACT--AAAT-TN-CGAAC--CTGTA--ATCAT------C---G--TT----T--TCC-TGTAGAAAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AGA-A-ATTTAAGGAT-A-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACG--TTTTA-ANNAAAGGTTTTGTA--AAAA---TCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATCGTT---------GGCAAAGT-TTG----------TT--AAGAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCTG-AA----T----AA-TGCAC-T-TGTACCTATAC--TA-GTTAT-AT---GCTTATT-TGTTCTCAGCACAT--ACT--TG-TA-TATAT---------GT-TATA-T-NA-CCCTTA-----C--TTGT--AA-TGATACN-T---TTATATGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|1 : ATTTCATAGCCTTAAATGGTTAAAGTGTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAGGAATGGAATAGTATTGTCAATGATTC-GTGTAAATATATTAATTATAG--AAT-TTTCAAAACAAATTTTG---GTATAGAAAATTATTTATT----GAAT---TTGCC-T-A-AAGATTTAAGGAT-TACATTAGCT--AAAT-TG-AGAAC--CTGTA--ATCAT------T---G--TT----T--TCC-TATAGAAAC-TGGTAGATGG-AAT-AA-TA-T---TGA-A-AGA-A-ATTTAAGGAT-A-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTCA-AAAAAAGATTTTGTA--AAAA---TCCCAAC---ATGATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT-------AAATCATT---------GGCAAAGT-TTG----------TT--AAGATAATATT-TAA-TGCTGTCT--G-CTC-TT--CCTA-AA----T----AA-TGCAC-G-TGTACCTATAC--TA-GTTAT-AT---GCTTATT-TGTTCTCAGCACAT--ACT--TG-TA-TATAT---------GT-TATA-T-TA-CCCTTA-----C--TTGT--AA-TGATACT-T---TTATATGGATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|10 : TA--ATCAC------C---A--CC----T--TCC-TGTTGAAGT-AGGCAGATGG-AAA-AA-CA-C---TTT-A-AGA-A-ATGAACGCTT-A-TGTACATTATGCAACTGTAA--C---CAA-ATTGGTGATGAATTTCATTTTATT------CT-TG-A--ATGTAAGACTT-T
gi|11 : aaactac-TT--CCTG-AC----T----AA-TGCAC-T-TGTACCTA--------GTTGT-AT---GCTTATT-TGTTCTCAGCACAT--ACT--TG-TG-TATAT---------GT-TATA-T-GA-CCCTTA-----C--TTGT--AA-TGATAC-----------------TTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTAAATAAgtgtaaattgcgtagagatttttttggtatagaatattgttctgctccaaacaccaaaacattttgtgaaattatgtcttccaaacaccctgtacaagttgaaagaaagttgtgtctttttattacgaaaatcaacaatattgtctgcttgacccctgtactttgtaattatt
gi|13 : gaaataataatgtttccaataataattttgatacagaataataaaacatgaccaaatatgattaactacatgtataatagttataaccgttgcatcaggtctaaagatcatatactccttgtgacagaatatcgagACATGAA-ATTT-----C-TGTATAA---TGTTCCC---CAT-GTGCCAA--TGTCATTG-T-GG-TTT-GAGTAAATAAatgaattgaatcgagc
gi|14 : aatgaatctgttctccttcacaaaaattcatttatcaaaatatattacattttactacaatattgtgtgtttgaatgcctacgtgcattcctttgctgttacttattctatgTGTTAAGGAAGCACTGAAGAACCAGTTTGTTCAAGAACGGCACAGCTCTGTAGAAAATTCCACG-ACATGTATTAATTACAG--GAT-TTTTAAGAC----------------GACGATTA--T-TT----GAATAAATTACC-T-A-AAG--TTGA-----TAT----------AAT-TT-CGAAC--AACAA--ATCATATACTAC---C--TT----TGATAT-TGT---AAC-AGGCAGATGG-AAC-AA-TA-T---Taaatcaaagaatgagtaaaatcatcgataaagac
gi|16 : tTTACAG--AAT-TTTTAAAAC----TTTG---GTTTGGAAACTTATTT-TG----AAAG--CTTATC-T-GTGAAACTC-AGAAG-TATATT--TTAGAAAT-TT-CGCACTACTATA--ACCAC------C---G--CC----T--GCC-AGTGGAGAC-TGGT
gi|17 : atGAATTTCATTATATC------AT-GG-A--ATGT--GA-TT-TTTTTTTCAA--ACGACGGAAAAAT---ACATTTTTTA-ATAAAAGGTTTTGT---AAAA---TCCCAAC---ATTATC--AAGTTTA-AT-GAAcg
gi|18 : ATT-TGTTCTCAGCACAT--ACT--TG-TA-TATATACATTGTATGT-TATA-T-GA-CCTTTATATTAC--TTGT--AA-TGATACG-T---TTATATGAATATTT-----T-TGT-T-----TGTACCT---CA
gi|19 : TA--ATCAT------T---G--AT----T--TC--TATAGAAAC-TGATATATGA-AAT-GA-TA-T---TCA-A-GGA-A-GCTTAAGGAC-A-TCTA-AATGTGTGA---TTG--CAA-TAGTATATGAGATGAATT
gi|2 : aCAAATTTTG---GGCTTGAAAAATATTT-AG----AAGT--ATTGCC-TTA-AAAATTTA--GATCTATTTTTCTC--AAAT-TT-CGTAC--CACAA--ATCAC------C---A--CC----T--TCC-AGTAGAGGC-TGGTAGATGG-GCC-AA-TA-T---TCT-A-TAT-A-ATGAAAGGTT-T-TGTGTCTTGTGTAA---TGAATTAA-AAG--TTGCGGATGAATTCCATTATA-T------AT-GACA--ATAC--AG--T-GCTTTGTCAAATATGAGAAAAGAAT---AC-----CTACACAGCAGGTACTACA--CAAG---ACCAAAT---GCTGTA--AAATTTC-AT-GAAAT-TATG
gi|2 : tgtttaattcatc--TG-TG-TGTAT----------T-TATA-C-T--TCTTTC-----T--TTGTCAAA-TG-TACG-T---TTAT--------TT-----T-TAT-TCAATGTATACCT---CAT-GTACCAC--AGA-ATG--T-GG--TTTAAGCGAATAAtcaaccagtgaggttaaaacactaaaaaaaactttgtatgttcatttccaaaatctatgagtatgtcctccttaacaaattaaaacctacattttgtatttatttatatatcctcccccccccccccccatatcactacatggttttattcgtgtgtgtatttatacttctttctttgtcaaatgtacgtttatttttattcaatgtatacctcatgtaccacagaatgtggtttaagcgaataaatgaactt
gi|22 : tgtttaattcatccaaattttgggcttgaaaaatatttagaagtattgccttaaaaatttagatctatttttctcaaatttcgtaccacaaatcaccaccttccagtagaggctggtagatgggccaatattctatataatgaaaggttttgtgtcttgtgtaatgaattaaaagttgcggatgaattccattatatatgacaatacagtgctttgtcaaatatgagaaaagaatacctacacagcaggtactacacaagaccaaatgctgtaaaatttcatgaaattatgtcaaccagtgaggttaaaacactaaaaaaaactttgtatgttcatttccaaaatctatgagtatgtcctccttaacaaattaaaacctacattttgtatttatttatatatcctcccccccccccccccatatcactacatggttttattcgGT--AA-TGATACTAT---TTATATGAATATTT-----TTTGT-T-----TGTACCT---TAT-GTACCAG--TG--ATC--T--G-TTTTGAGTGAATAAatgaactt
gi|23 : ATTTCATAGTCTTAACTGGTTAAAGTCTTGTGTTAAAGAAAAGCTGAAAAACCAATTCGTACAAGAATGGAAatgaattgaa
gi|26 : GAAC--CTGTA--ATCAT------C---G--TT----T--TCC-TATAGA
gi|3 : aAATCACAGGTAATGTTTTAAT-TAA----TGCATGTCTGAAAACTTATCT-TG----AAAT--CTTACC-T-GTGAAACTCA-GGAG-CATATTTTTG--AAAT-TT-GGCAC--TACTA--ACCAC------T---G--CC----T--GTC-GGTGGAGAC-TGGTCGATGG-TTC-AG-TA-TACATAC-A-TGT-ATAATGAAAGATTG-TGTGTGTTGTGTAA---TGA--TAA-CAAAATAGCAGATGAATGTCATTTTTTTTTTTTGTT-AG-A--ATGC--AGTGC-TTTGTCTACA--ATAAGAAAAGAAT---AC---CTTCA-ACAAAA-ATATTGTA--CTAG---ACCAAAT---ACTGT-----GTTTA-AT-GAAAT-TATG----------T-----C--GAC-T-AG---TAATATT------AAAA-AACT---------AAGAAACT-GTGGATCTTTATTTT--AAAAAAATATG-AAA-AA--GTAT--G-TTC--T--CCTT-AA----TACAAAA-T-TAT-T-TTT--CTATTG--TACGTTTT-AT---GTATATTCTATT-TCA-------------TG-TA-TATA-------------TACA-TGTA-GTTTTG-----T--TTGC-------ATACC-T---ACATAC-ACTCTTCGGACGT-TAT-T-----TGTACTTATAAAT-GTACCAATTTG--ATTG-T-GG--TTTGAGAGAATAA
gi|4 : aATATATTAATTATAA--AAA-TTTTAACACAAATTTTG---GTTTAAAAAAT-ATTT-------------GTTG----------ATTTAAGGAT-CACGTTAACT--AAATATAGCGATT--TTGTATAATGAT------C---GCCTTGAAAT--TCC-TGTAGAGGC-TGGTAGATGG-A-C-AA-CA-T---TAC-A-AGG-A-ATTTGGGGAC-A-TGCACAAAGTGTGA---TTG--CA----GTAT--------AGTTTCATTATTTC------AC-GG-AGTATAC---ATTT-TTTTTTT-AA--ATCACAGAAAAAT---ATA---TCTA-ACGAAAGATTTTGGA--AAGG---CCTCA-----ATTAC-----GTTTG-AG-AAGTT-AATGA-ATACAAACTACAAAC--AATGT-AA---TATTTTT------AAAATCATT---------TGT-GAGT-TTT----------TT--attgaactgaat
gi|4 : atgtGCTGCTT--G-TTT-TT--CCTG-AGCTTCT----AC-GGCAC-T-TACACCTA-ACAATA-CTTTT-AT-----TCATT-T---TTCAATGCAT--ACT--TG-TA-CATAT----------T-T-TG-T-GA-CCCTTA-----C--TTAC--A------ACC-T---GTATATA------T-----T-TGT-T-----TGACCCT---CAT-GTACCAA--TA--ATC--T-AG-TTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttgttttttgcgctgcttgtttttcctgagcttctacggcacttacacctaacaatacttttattcatttttcaatgcatacttgtacatattttgtgacccttacttacaacctgtatatatttgtttgaccctcatgtaccaataatctagtttaa
gi|5 : atgtatatattaattataaaaattttaacacaaattttggtttaaaaaatatttgttgatttaaggatcacgttaactaaatatagcgattttgtataatgatcgccttgaaattcctgtagaggctggtagatggacaacattacaaggaatttggggacatgcacaaagtgtgattgcagtatagtttcattatttcacggagtatacattttttttttaaatcacagaaaaatatatctaacgaaagattttggaaaggcctcaattacgtttgagaagttaatgaatacaaactacaaacaatgtaatatttttaaaatcatttgtgagttttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttgttttttgcGAAC--CTGAA--ATCAT------CACTG--TT----T--TCCATATAGGAACCTGGTCGATGGTAATTAA-TA-T---TGACATAGAGA-ATTTAAGGAT-AATGTTCAATGTGTAA---TAAA-CAA-CAGAATCGGTGATGAATTTCATAATATT------AT-GG-A--A-GT--GATTT-TGTTTTCAAA--ACGACAGCAAAACATAACA--TTTTA-ATAAAAGGTTTT-TA--GAAAATCTCCCAACAGTATTATC--AAGCTTACATCGAACTAAATGACA-------TACAAACAAAATATCAGGGTTAATTTTTTCTAAGAAATTTTTCAAATTGGGGGCAAAGT-TTG----------TTTAAAGAAAATATTCTAATTGCTGTCT--GTCTC-TT--CCT---A----TC---AA-TGCAC-T-TGTATC----G--TA-GTTAT-ATTGAGCTTA-T-TGTTC-CAGCACAT---CT--TGTTA-TATAT---------A-----A-T-GACCCCTTA-----C--TTGT---A-TGATACC-----TTATATGAATATTT-----T-TGT-T-----TGTA-CT---CATCGTACCAG--TG--ACC--C-GGTTTTTGAGTGAATAAaa
gi|6 : ATTATTT-TTTCCCAAAT--GTAGCCGT-G-AAGATTTAAGGAT-TATATTAACT--AAAT-TG-AGAAC--GTGCA--ATCAT------C---G--TT----T--TCC-TAT-----------AGA--------------------------A-A-ATTTAAGAAT-A-TGTACAATGGGCAA---GAA--CAA-CAGCATTGGTGATGAATTTCATTTCATT------AT-GG-A--ATGT--GATGGGTTTTTTTCAA--AGGACAGCAAAAT---ACG--TCTTA-ATAAAAGGTTTTATA--AAAA---ACCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---CAATCTT------AAAATCGTT---------GGCAAAGTGTTG----------TT--AGAAACAT-TT-TAA-TGCTGTCT--G-CTCTTT--TCTGTAC----T----AAGTGTACAT-TGTAT-----C--TA-GTTAT-AT---GCTTA-T-TGTTCTCA-CACATACACT--CG-TA-TA-AT---------GTCTATA-T-AA-CCTTTA-----C--TTGT--AATTGAGAC--T---TTATA--------------------------TGTACCT---CAT-GTACCAG--TG--ATT--T-GA-TTTTGAGTGATTAAatgaattgatgag
gi|7 : C--CTGTA--ATCAT------C---G--TT----T--TC--TATAGAAAC-TGGTAGATGG-AAT-AAATAAT---TGA-A-AGA-A-ATTTAAGGAT-A-TGTACAATGT-TA----TAA--CAAACAGCATCGGTGATGA-TTTCATTATATT------ATTGG-A--ATGT--GATTT-TTTTTTCCAA---CGACAGAAAAAT---ACA--TTTTA-AATAAAGGTTTGGTAGAAAAA---TCCCAAC---ATTATCGAAAGTTTA-AT-GA-CTGAATGA-A-------TACAAAC--A-TAT-AG---TAATTCT------AAAATTATT---------G-CAAAGT-TTG----------TT--AAAAAAGTATT-TAA-TGCTATCT--G-CT--TT--CCT---A----T----AAATGCAC-T-TA-----AT-C--TA-GTTATGAT---GCTTATT-TGTTCTCAGCACAT--ACTGTTG-TAATATAT---------GT-TAAAGT-GA-CC-TTA-----A--TTGT--AA-TGATAC--T---TTATATGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--CGGG-TTTTGAGTGAATa
gi|9 : -TGCTGTCTTTA-CTC-TTTACCTA-AA---------AA-TG-AC-TATGTAC-----------------AT---GTTT-CT-TGTTTT--ATATAT--ACA--AA-TA-TACAT---------GT--GTA-T-TT-CTTTTT-----CCATTGT--AA-T-ATACA-TGTATTATACAAGTAT--------------------G-ACCT---CAT-GTACCAA--TT--ATTGAT-GG--TGTGAGTGAATAAcaaatga
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCATTATATATACATGTATAAGAAAAACTAGTACGATATAGTACATGTATGACGATTATGACTATTGCTGATTTGCAGAAATACACTTTTCTTATATTGGATAAACCAGTGTTTTCTGATACAAAGAAAGCCATATTGTGCGCGACAAAATGTGATGAAATATGAAATTATGTCAGCCAGTCCCGTGAAAGATTGTGCACGTTTCAGTTACATATATCTGAATAAGGCTGTTCTCCTTAATTAACACAAAACTTCATTTTTGTGTACATATTTATATTTTACTTTGTTTATTTGTATGCCTATATACATGTACATTCCTGTGATTATGCATGTAATTTCTGTATACCGTACCTCATGCACCTCTGTCATTGTGGTTTGAACGAAAAAAAAGAAAAAAAAGAGCAAGAATTGAAAAAAC
Unaligned ( gi|12 ): TATGCGCTTTAAAAAAACAATTTTTACATCCTAGGTACTGTTCAAAGCCAAATATTATAAAATTTTCAGAATTAATGTCTTCTTCAAGTGTTAAAAAACTTAGAAACCTGTGCATGTTTACAACAAAAATATATGATCTAGTCTGACCTCCATAACCTAGGCATGAAGGCCTATACACCTCTTTTGCTTTCTTTTCCTGAAAATGACTATGTATATG
Unaligned ( gi|15 ): TGTGTATCTTTATTTCAAAAATATATGAAAATTATAGTCTGTTTTTCTTTTCTATTAATTGTAACATTTTATGTATATTCATGTATATATTTTATTTATTTCATTTGCATACCTACATATTATGACTCTTCTGACGTTATTTGTACTAATAAATGTAACTTTTGTATTG
Unaligned ( gi|20 ): TTATATATATATACATATGTATTACTTTTTCCATTTTTATATATCATTTGACTTCTTGTACCAATTATTGATGGTACGAGAGAATAAAGAAACTTGAA
Unaligned ( gi|21 ): TACCATATATTTTTTTTTGTTACAACACAGTGCTTTATCTGACATGAGAAAAGAATACCTACACAGCAAATATTGTACAAGTCCAAATA
Unaligned ( gi|24 ): GAAGTTTCGTACCACTAACCATCGCCTGCACGTTGAGACTGGTAAAAGGTTTGGTAT
Unaligned ( gi|25 ): TAGAAACTTGAAATTATGTACTCTTTGTAACAA
Alignments
lowQualScore : 1 11 1111 111 2222222 11111 11 1111 1111111 11 1 111111 1111 111 1 2222222222 111 1111111 11111111 111 111111 222222222222222222222 333333333333333333333333333333333333333333333 33333333333333333333333333333333333333333333 222222222222 1111111 11111111 11111111111 222222 11111 11
lowQualScore : 1 1 0 1 2 1 5 7 1 11 8 11 6666 111 3 3 6666666 88 77777 0 22 77 3 3333 66 1 55 11 44 888888 555 44 6666 44 33 4 3 99999 4 4 0000000 55 4 4 4 4 777 0 00 4 0 6 2 222222 4 4 66 66 3 4 2 66 888 4444 5 2 0 66 9999 888 222 5 5 1 7777777777 5 99999999 000 0 6666666 99999999 000 1 666666 5 777777777777777777777 2 5 66 0 66 5 4 66 777777777777777777777777777777777777777777777 4 4 777 3 4 00000000000000000000000000000000000000000000 55 55 4 4 000000000000 6666 4 0000000 3 11111111 88888888888 3 444444 9999999 88888 3 3 22222 555 3 55 88 22 3 88
lowQualScore : . . . . . . . . . .. . .. .... ... . . ....... .. ..... . .. .. . .... .. . .. .. .. ...... ... .. .... .. .. . . ..... . . ....... .. . . . . ... . .. . . . . ...... . . .. .. . . . .. ... .... . . . .. .... ... ... . . . .......... . ........ ... . ....... ........ ... . ...... . ..................... . . .. . .. . . .. ............................................. . . ... . . ............................................ .. .. . . ............ .... . ....... . ........ ........... . ...... ....... ..... . . ..... ... . .. .. .. . ..
lowQualScore : 0 0 7 0 5 0 0 3 0 00 0 88 5555 777 7 7 0000000 11 77777 4 77 00 9 7777 99 0 00 00 22 888888 444 22 5555 22 99 8 3 88888 0 0 0000000 66 4 4 4 4 888 1 66 4 2 4 1 888888 4 4 11 11 6 4 5 99 888 0000 0 2 2 99 8888 888 555 0 0 4 1111111111 0 77777777 000 3 6666666 66666666 000 7 444444 7 111111111111111111111 9 7 66 8 99 0 4 11 999999999999999999999999999999999999999999999 4 4 888 8 0 55555555555555555555555555555555555555555555 55 55 0 0 555555555555 2222 0 9999999 0 22222222 11111111111 6 333333 8888888 33333 3 3 99999 888 6 00 66 33 6 00
consensus : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAAATTTTG---GTCTGGAAAATTATTT-TG----AAATNTTGCC-T-G-AAGATTTAAGGAT-TATATTNNCTAAATTT--CGAAC--CTGTA--ATCAT------C---G--CT----T--TCC-TGTAGAGAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AGA-A-ATTTAAGGAT-A-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCTN-AAT----AA---------TGCA-C-T-TGTACCTAT-C-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATACN-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
Reference ( family-75 ) : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAAATTTTG---GTCTGGAAAATTATTT-TN----AAATNTTGCC-T-G-AAGATTTAAGGAT-TATATTANCTAAATTT--CGAAC--CTGTA--ATCAT------C---G--TT----T--TCC-TGTAGAAAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AGA-A-ATTTAAGGAT-A-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCTG-AAT----AA---------TGCA-C-T-TGTACCTAT-C-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATACN-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|1 : ATTTCATAGCCTTAAATGGTTAAAGTGTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAGGAATGGAATAGTATTGTCAATGATTC-GTGTAAATATATTAATTATAG--AAT-TTTCAAAACAAATTTTG---GTATAGAAAATTATTTATT----GAAT-TTGCC-T-A-AAGATTTAAGGAT-TACATTAGCTAAATTG--AGAAC--CTGTA--ATCAT------T---G--TT----T--TCC-TATAGAAAC-TGGTAGATGG-AAT-AA-TA-T---TGA-A-AGA-A-ATTTAAGGAT-A-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTCA-AAAAAAGATTTTGTA--AAAA---TCCCAAC---ATGATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT-------AAATC------ATT---GGCAAA------GT-TTG----------TT--AA----GATAATATT-TAA-TGCTGTCT--G-CTC-TT--CCTA-AAT----AA---------TGCA-C-G-TGTACCTATAC-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TT-A-C--CCTTA-----C--TTGT--A--------A-TGATACT-T---TTATA---TGGATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|10 : TA--ATCAC------C---A--CC----T--TCC-TGTTGAAGT-AGGCAGATGG-AAA-AA-CA-C---TTT-A-AGA-A-ATGAACGCTT-A-TGTACATTATGCAACTGTAA--C---CAA-ATTGGTGATGAATTTCATTTTATT------CT-TG-A--ATGTAAGACTT-T
gi|11 : aaactac-TT--CCTG-ACT----AA---------TGCA-C-T-TGTACCTA-------GTTGT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TG-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATAC--------------------TTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTAAATAAgtgtaaattgcgtagagatttttttggtatagaatattgttctgctccaaacaccaaaacattttgtgaaattatgtcttccaaacaccctgtacaagttgaaagaaagttgtgtctttttattacgaaaatcaacaatattgtctgcttgacccctgtactttgtaattatt
gi|13 : gaaataataatgtttccaataataattttgatacagaataataaaacatgaccaaatatgattaactacatgtataatagttataaccgttgcatcaggtctaaagatcatatactccttgtgacagaatatcgagACA---TGAA-ATTT-----C-TGTATAA---TGTTCCC---CAT-GTGCCAA--TGTCATTG-T-GG-TTT-GAGTAAATAAatgaattgaatcgagc
gi|14 : aatgaatctgttctccttcacaaaaattcatttatcaaaatatattacattttactacaatattgtgtgtttgaatgcctacgtgcattcctttgctgttacttattctatgTGTTAAGGAAGCACTGAAGAACCAGTTTGTTCAAGAACGGCACAGCTCTGTAGAAAATTCCACG-ACATGTATTAATTACAG--GAT-TTTTAAGAC----------------GACGATTATTT-GA----ATAAATTACC-T-A-AAG--TTGA-----TAT--------AATTT--CGAAC--AACAA--ATCATATACTAC---C--TT----TGATAT-TGT---AAC-AGGCAGATGG-AAC-AA-TA-T---Taaatcaaagaatgagtaaaatcatcgataaagac
gi|16 : tTTACAG--AAT-TTTTAAAAC----TTTG---GTTTGGAAACTTATTT-TG----AAAGCTTATC-T-GTGAAACTCA-GAAG-TATATTTTAGAAATTT--CGCACTACTATA--ACCAC------C---G--CC----T--GCC-AGTGGAGAC-TGGT
gi|17 : atGAATTTCATTATATC------AT-GG-A--ATGT--GA-TT-TTTTTTTCAA--ACGACGGAAAAAT---ACATTTTTTA-ATAAAAGGTTTTGT---AAAA---TCCCAAC---ATTATC--AAGTTTA-AT-GAAcg
gi|18 : ATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATATACATTGTATGT-TAT--A-TG-A-C--CTTTATATTAC--TTGT--A--------A-TGATACG-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CA
gi|19 : TA--ATCAT------T---G--AT----T--TC--TATAGAAAC-TGATATATGA-AAT-GA-TA-T---TCA-A-GGA-A-GCTTAAGGAC-A-TCTA-AATGTGTGA---TTG--CAA-TAGTATATGAGATGAATT
gi|2 : aCAAATTTTG---GGCTTGAAAAATATTT-AG----AAGTATTGCC-TTA-AAAATTTA--GATCTATTTTTCTCAAATTT--CGTAC--CACAA--ATCAC------C---A--CC----T--TCC-AGTAGAGGC-TGGTAGATGG-GCC-AA-TA-T---TCT-A-TAT-A-ATGAAAGGTT-T-TGTGTCTTGTGTAA---TGAATTAA-AAG--TTGCGGATGAATTCCATTATA-T------AT-GACA--ATAC--AG--T-GCTTTGTCAAATATGAGAAAAGAAT---AC-----CTACACAGCAGGTACTACA--CAAG---ACCAAAT---GCTGTA--AAATTTC-AT-GAAAT-TATG----------T-CAACC--------AG---TGAGGTT------AAAA-C------ACT---AAAAAAAACTTTGT-ATG----------TT--CATTTCCAAAATCTA-TGA-----GTAT--G--TC-CT--CCTT-AAC----AAATTAAAACCTACATT-T-TGTATTTAT-T-TA---TAT-A-T---CCTCCCC-CCCCCCCCCCCATAT---------CACTAC------------ATGGTTTT--ATT--CG-TG-TGTGT---------AT-T-T--A-T--A-CTTCTTTC-----T--TTGTCAA--------A-TG-TACG-T---T-----------TATTT-----T-TAT-TCAATGTATACCT---CAT-GTACCAC--AGA-ATG--T-GG--TTTAAGCGAATAA
gi|22 : tgtttaattcatcGT--A--------A-TGATACTAT---TTATA---TGAATATTT-----TTTGT-T-----TGTACCT---TAT-GTACCAG--TG--ATC--T--G-TTTTGAGTGAATAAatgaactt
gi|23 : ATTTCATAGTCTTAACTGGTTAAAGTCTTGTGTTAAAGAAAAGCTGAAAAACCAATTCGTACAAGAATGGAAatgaattgaa
gi|24 : AAGTTT--CGTAC--CACTA--ACCAT------C---G--CC----T--GCA-CGTTGAGAC-TGGTAAAAGG-
gi|26 : gGAAC--CTGTA--ATCAT------C---G--TT----T--TCC-TATAGAtttggtat
gi|3 : aAATCACAGGTAATGTTTTAAT-TAA----TGCATGTCTGAAAACTTATCT-TG----AAATCTTACC-T-GTGAAACTCA-GGAG-CATATTTTTGAAATTT--GGCAC--TACTA--ACCAC------T---G--CC----T--GTC-GGTGGAGAC-TGGTCGATGG-TTC-AG-TA-TACATAC-A-TGT-ATAATGAAAGATTG-TGTGTGTTGTGTAA---TGA--TAA-CAAAATAGCAGATGAATGTCATTTTTTTTTTTTGTT-AG-A--ATGC--AGTGC-TTTGTCTACA--ATAAGAAAAGAAT---AC---CTTCA-ACAAAA-ATATTGTA--CTAG---ACCAAAT---ACTGT-----GTTTA-AT-GAAAT-TATG----------T-----C--GAC-T-AG---TAATATT------AAAA-A------ACT---AAGAAA------CT-GTGGATCTTTATTTT--AA----AAAAATATG-AAA-AA--GTAT--G-TTC--T--CCTT-AATACAAAA---------T-TA-T-T-TTT--CTAT-TGTACGTTTT-A-T---GTATATTCTATT----------T---------CA-------------------------------TG-TA-TATA-------------TAC--A-TGTA-G--TTTTG-----T--TTGC---------------ATACC-T---ACATA---C-ACTCTTCGGACGT-TAT-T-----TGTACTTATAAAT-GTACCAATTTG--ATTG-T-GG--TTTGAGAGAATAA
gi|4 : aTGTATATATTAATTATAA--AAA-TTTTAACACAAATTTTG---GTTTAAAAAAT-ATTT-----------GTTG----------ATTTAAGGAT-CACGTTAACTAAATATAGCGATT--TTGTATAATGAT------C---GCCTTGAAAT--TCC-TGTAGAGGC-TGGTAGATGG-A-C-AA-CA-T---TAC-A-AGG-A-ATTTGGGGAC-A-TGCACAAAGTGTGA---TTG--CA----GTAT--------AGTTTCATTATTTC------AC-GG-AGTATAC---ATTT-TTTTTTT-AA--ATCACAGAAAAAT---ATA---TCTA-ACGAAAGATTTTGGA--AAGG---CCTCA-----ATTAC-----GTTTG-AG-AAGTT-AATGA-ATACAAACTACAAAC--AATGT-AA---TATTTTT------AAAATC------ATT---TGT-GA------GT-TTT----------TT----------NNNNNNN-NNN-NNNNNNNN--N-NNN-NN--NNNN-NNN----NN---------NNNN-N-T-TGTTTTTGT-T-T--TTTGC-GCT---GCTTGTT-TTTCC---------TGAGCTTCTACGGCACTTACACCTAACAA------T--ACT--TT-TA-TTCAT---------TT-T-TCAA-TG-------CATA-----C--TTGT--ACATATTTTG-TGACCCT-TAC-TTACAACCTGTATATAT-----T-TGT-T-----TGACCCT---CAT-GTACCAA--TA--ATC--T-AG-TTTattgaactgaat
gi|5 : aGAAC--CTGAA--ATCAT------CACTG--TT----T--TCCATATAGGAACCTGGTCGATGGTAATTAA-TA-T---TGACATAGAGA-ATTTAAGGAT-AATGTTCAATGTGTAA---TAAA-CAA-CAGAATCGGTGATGAATTTCATAATATT------AT-GG-A--A-GT--GATTT-TGTTTTCAAA--ACGACAGCAAAACATAACA--TTTTA-ATAAAAGGTTTT-TA--GAAAATCTCCCAACAGTATTATC--AAGCTTACATCGAACTAAATGACA-------TACAAACAAAATATCAGGGTTAATTTTTTCTAAGAAATTTTTCAAATTGGGGGCAAA------GT-TTG----------TTTAAA----GAAAATATTCTAATTGCTGTCT--GTCTC-TT--CCT---ATC---AA---------TGCA-C-T-TGTATC----G-TA-GTTAT-A-TTGAGCTTA-T-TGTTC-------------------CAGCAC------------A------T---CT--TGTTA-TATAT---------A-------A-TG-ACC--CCTTA-----C--TTGT-----------A-TGATACC-----TTATA---TGAATATTT-----T-TGT-T-----TGTA-CT---CATCGTACCAG--TG--ACC--C-GGTTTTTGAGTGAATAAaa
gi|6 : ATTATTT-TTTCCCAAATGTAGCCGT-G-AAGATTTAAGGAT-TATATTAACTAAATTG--AGAAC--GTGCA--ATCAT------C---G--TT----T--TCC-TAT-----------AGA--------------------------A-A-ATTTAAGAAT-A-TGTACAATGGGCAA---GAA--CAA-CAGCATTGGTGATGAATTTCATTTCATT------AT-GG-A--ATGT--GATGGGTTTTTTTCAA--AGGACAGCAAAAT---ACG--TCTTA-ATAAAAGGTTTTATA--AAAA---ACCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---CAATCTT------AAAATC------GTT---GGCAAA------GTGTTG----------TT--AG----AAACAT-TT-TAA-TGCTGTCT--G-CTCTTT--TCTGTACT----AAG--------TGTA-CAT-TG----TAT-C-TA-GTTAT-A-T---GCTTA-T-TGTTC---------T---------CA-CAC------------A------TACACT--CG-TA-TA-AT---------GTCTAT--A-TA-A-C--CTTTA-----C--TTGT--A--------ATTGAGAC--T---TTATA-----------------------------TGTACCT---CAT-GTACCAG--TG--ATT--T-GA-TTTTGAGTGATTAAatgaattgatgag
gi|7 : C--CTGTA--ATCAT------C---G--TT----T--TC--TATAGAAAC-TGGTAGATGG-AAT-AAATAAT---TGA-A-AGA-A-ATTTAAGGAT-A-TGTACAATGT-TA----TAA--CAAACAGCATCGGTGATGA-TTTCATTATATT------ATTGG-A--ATGT--GATTT-TTTTTTCCAA---CGACAGAAAAAT---ACA--TTTTA-AATAAAGGTTTGGTAGAAAAA---TCCCAAC---ATTATCGAAAGTTTA-AT-GA-CTGAATGA-A-------TACAAAC--A-TAT-AG---TAATTCT------AAAATT------ATT---G-CAAA------GT-TTG----------TT--AA----AAAAGTATT-TAA-TGCTATCT--G-CT--TT--CCT---AT----AAA--------TGCA-C-T-TA-----AT-C-TA-GTTATGA-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACTGTTG-TAATATAT---------GT-TAA--AGTG-A-C--C-TTA-----A--TTGT--A--------A-TGATAC--T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--CGGG-TTTTGAGTGAATa
gi|9 : -TGCTGTCTTTA-CTC-TTTACCTA-AA-----AA---------TG-A-C-TATGTAC----------------A-T---GTTT-CT-TGTTT---------T-----------ATAT------------A------T--ACA--AA-TA-TACAT---------GTGTAT--T-T----C--TTTTT-----CCATTGT--A--------A-T-ATACA-TGTATTATA---CAAGTAT--------------------G-ACCT---CAT-GTACCAA--TT--ATTGAT-GG--TGTGAGTGAATAAcaaatga
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCATTATATATACATGTATAAGAAAAACTAGTACGATATAGTACATGTATGACGATTATGACTATTGCTGATTTGCAGAAATACACTTTTCTTATATTGGATAAACCAGTGTTTTCTGATACAAAGAAAGCCATATTGTGCGCGACAAAATGTGATGAAATATGAAATTATGTCAGCCAGTCCCGTGAAAGATTGTGCACGTTTCAGTTACATATATCTGAATAAGGCTGTTCTCCTTAATTAACACAAAACTTCATTTTTGTGTACATATTTATATTTTACTTTGTTTATTTGTATGCCTATATACATGTACATTCCTGTGATTATGCATGTAATTTCTGTATACCGTACCTCATGCACCTCTGTCATTGTGGTTTGAACGAAAAAAAAGAAAAAAAAGAGCAAGAATTGAAAAAAC
Unaligned ( gi|12 ): TATGCGCTTTAAAAAAACAATTTTTACATCCTAGGTACTGTTCAAAGCCAAATATTATAAAATTTTCAGAATTAATGTCTTCTTCAAGTGTTAAAAAACTTAGAAACCTGTGCATGTTTACAACAAAAATATATGATCTAGTCTGACCTCCATAACCTAGGCATGAAGGCCTATACACCTCTTTTGCTTTCTTTTCCTGAAAATGACTATGTATATG
Unaligned ( gi|15 ): TGTGTATCTTTATTTCAAAAATATATGAAAATTATAGTCTGTTTTTCTTTTCTATTAATTGTAACATTTTATGTATATTCATGTATATATTTTATTTATTTCATTTGCATACCTACATATTATGACTCTTCTGACGTTATTTGTACTAATAAATGTAACTTTTGTATTG
Unaligned ( gi|20 ): TTATATATATATACATATGTATTACTTTTTCCATTTTTATATATCATTTGACTTCTTGTACCAATTATTGATGGTACGAGAGAATAAAGAAACTTGAA
Unaligned ( gi|21 ): TACCATATATTTTTTTTTGTTACAACACAGTGCTTTATCTGACATGAGAAAAGAATACCTACACAGCAAATATTGTACAAGTCCAAATA
Unaligned ( gi|25 ): TAGAAACTTGAAATTATGTACTCTTTGTAACAA
Alignments
lowQualScore : 1 11 1111 111 22222222222222 11111 1111 11111111111111 11 1 111111 1111 111 1 2222222222 111 1111111 11111111 111 111111 222222222222222222222 333333333333333333333333333333333333333333333 33333333333333333333333333333333333333333333 222222222222 1111111 11111111 11111111111 222222 11111 11
lowQualScore : 1 1 0 1 2 1 5 7 1 11 8 11 6666 111 3 3 33333333333333 77777 0 555 77 3 1111 66 1 55 11 44 888888 555 888888 44 3 0 3 99999 4 4 22222222222222 4 777 0 00 4 0 6 2 222222 4 4 66 66 3 4 2 66 888 4444 5 2 0 66 9999 888 222 5 5 1 7777777777 5 99999999 000 0 6666666 99999999 000 1 666666 5 777777777777777777777 2 5 66 0 66 5 4 66 333333333333333333333333333333333333333333333 4 4 777 3 4 00000000000000000000000000000000000000000000 55 55 4 4 000000000000 6666 4 0000000 3 11111111 88888888888 3 444444 9999999 88888 3 3 22222 555 3 55 88 22 3 88
lowQualScore : . . . . . . . . . .. . .. .... ... . . .............. ..... . ... .. . .... .. . .. .. .. ...... ... ...... .. . . . ..... . . .............. . ... . .. . . . . ...... . . .. .. . . . .. ... .... . . . .. .... ... ... . . . .......... . ........ ... . ....... ........ ... . ...... . ..................... . . .. . .. . . .. ............................................. . . ... . . ............................................ .. .. . . ............ .... . ....... . ........ ........... . ...... ....... ..... . . ..... ... . .. .. .. . ..
lowQualScore : 0 0 7 0 5 0 0 3 0 00 0 88 5555 777 7 7 00000000000000 77777 4 999 00 9 1111 99 0 00 00 22 888888 444 888888 66 1 1 3 88888 0 0 66666666666666 4 888 1 66 4 2 4 1 888888 4 4 11 11 6 4 5 99 888 0000 0 2 2 99 8888 888 555 0 0 4 1111111111 0 77777777 000 3 6666666 66666666 000 7 444444 7 111111111111111111111 9 7 66 8 99 0 4 11 000000000000000000000000000000000000000000000 4 4 888 8 0 55555555555555555555555555555555555555555555 55 55 0 0 555555555555 2222 0 9999999 0 22222222 11111111111 6 333333 8888888 33333 3 3 99999 888 6 00 66 33 6 00
consensus : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAAATTTTG---GTCTGGAAAATTATTT--TG----AA-ATNTTGCC-T-G-AAGATTTAAGGAT-TATATTNNCTAAATTT--CGAAC--CTGTA--ATCAT------CGCC---TT------CC-TGTAGAGAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-NAAT----AA---------TGCA-C-T-TGTACCTAT-C-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATACN-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
Reference ( family-75 ) : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAAATTTTG---GTCTGGAAAATTATTT--TG----AA-ATNTTGCC-T-G-AAGATTTAAGGAT-TATATTNNCTAAATTT--CGAAC--CTGTA--ATCAT------CGCT---TT------CC-TGTAGAGAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-NAAT----AA---------TGCA-C-T-TGTACCTAT-C-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATACN-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|1 : ATTTCATAGCCTTAAATGGTTAAAGTGTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAGGAATGGAATAGTATTGTCAATGATTC-GTGTAAATATATTAATTATAG--AAT-TTTCAAAACAAATTTTG---GTATAGAAAATTATTTATTG----AA---TTTGCC-T-A-AAGATTTAAGGAT-TACATTAGCTAAATTG--AGAAC--CTGTA--ATCAT------TGTT---TT------CC-TATAGAAAC-TGGTAGATGG-AAT-AA-TA-T---TGA-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTCA-AAAAAAGATTTTGTA--AAAA---TCCCAAC---ATGATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT-------AAATC------ATT---GGCAAA------GT-TTG----------TT--AA----GATAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-AAAT----AA---------TGCA-C-G-TGTACCTATAC-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TT-A-C--CCTTA-----C--TTGT--A--------A-TGATACT-T---TTATA---TGGATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|10 : TA--ATCAC------CACC---TT------CC-TGTTGAAGT-AGGCAGATGG-AAA-AA-CA-C---TTT-A-AG-A-AATGAACGCTTA-TGTACATTATGCAACTGTAA--C---CAA-ATTGGTGATGAATTTCATTTTATT------CT-TG-A--ATGTAAGACTT-T
gi|11 : aaactac-TT--CCT-GACT----AA---------TGCA-C-T-TGTACCTA-------GTTGT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TG-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATAC--------------------TTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTAAATAAgtgtaaattgcgtagagatttttttggtatagaatattgttctgctccaaacaccaaaacattttgtgaaattatgtcttccaaacaccctgtacaagttgaaagaaagttgtgtctttttattacgaaaatcaacaatattgtctgcttgacccctgtactttgtaattatt
gi|13 : gaaataataatgtttccaataataattttgatacagaataataaaacatgaccaaatatgattaactacatgtataatagttataaccgttgcatcaggtctaaagatcatatactccttgtgacagaatatcgagACA---TGAA-ATTT-----C-TGTATAA---TGTTCCC---CAT-GTGCCAA--TGTCATTG-T-GG-TTT-GAGTAAATAAatgaattgaatcgagc
gi|14 : aatgaatctgttctccttcacaaaaattcatttatcaaaatatattacattttactacaatattgtgtgtttgaatgcctacgtgcattcctttgctgttacttattctatgTGTTAAGGAAGCACTGAAGAACCAGTTTGTTCAAGAACGGCACAGCTCTGTAGAAAATTCCACG-ACATGTATTAATTACAG--GAT-TTTTAAGAC----------------GACGATTA-TT--TG----AATAAATTACC-T-A-AAG--TTGA-----TAT--------AATTT--CGAAC--AACAA--ATCATATACTAC-CT---TT------GA-TATTGTAAC-AGGCAGATGG-AAC-AA-TA-T---Taaatcaaagaatgagtaaaatcatcgataaagac
gi|16 : tTTACAG--AAT-TTTTAAAAC----TTTG---GTTTGGAAACTTATTT--TG----AA-AGCTTATC-T-GTGAAACTC-AGAAG-TATATTTTAGAAATTT--CGCACTACTATA--ACCAC------CGCC---TG------CC-AGTGGAGAC-TGGT
gi|17 : atGAATTTCATTATATC------AT-GG-A--ATGT--GA-TT-TTTTTTTCAA--ACGACGGAAAAAT---ACATTTTTTA-ATAAAAGGTTTTGT---AAAA---TCCCAAC---ATTATC--AAGTTTA-AT-GAAcg
gi|18 : ATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATATACATTGTATGT-TAT--A-TG-A-C--CTTTATATTAC--TTGT--A--------A-TGATACG-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CA
gi|19 : TA--ATCAT------TGAT---TT------C--TATAGAAAC-TGATATATGA-AAT-GA-TA-T---TCA-A-GG-A-AGCTTAAGGACA-TCTA-AATGTGTGA---TTG--CAA-TAGTATATGAGATGAATT
gi|2 : aCAAATTTTG---GGCTTGAAAAATATTT--AG----AA-GTATTGCC-TTA-AAAATTTA--GATCTATTTTTCTCAAATTT--CGTAC--CACAA--ATCAC------CACC---TT------CC-AGTAGAGGC-TGGTAGATGG-GCC-AA-TA-T---TCT-A-TA-T-AATGAAAGGTTT-TGTGTCTTGTGTAA---TGAATTAA-AAG--TTGCGGATGAATTCCATTATA-T------AT-GACA--ATAC--AG--T-GCTTTGTCAAATATGAGAAAAGAAT---AC-----CTACACAGCAGGTACTACA--CAAG---ACCAAAT---GCTGTA--AAATTTC-AT-GAAAT-TATG----------T-CAACC--------AG---TGAGGTT------AAAA-C------ACT---AAAAAAAACTTTGT-ATG----------TT--CATTTCCAAAATCTA-TGA-----GTAT--G--TC-CT--CCT-TAAC----AAATTAAAACCTACATT-T-TGTATTTAT-T-TA---TAT-A-T---CCTCCCC-CCCCCCCCCCCATAT---------CACTAC------------ATGGTTTT--ATT--CG-TG-TGTGT---------AT-T-T--A-T--A-CTTCTTTC-----T--TTGTCAA--------A-TG-TACG-T---T-----------TATTT-----T-TAT-TCAATGTATACCT---CAT-GTACCAC--AGA-ATG--T-GG--TTTAAGCGAATAA
gi|22 : tgtttaattcatcGT--A--------A-TGATACTAT---TTATA---TGAATATTT-----TTTGT-T-----TGTACCT---TAT-GTACCAG--TG--ATC--T--G-TTTTGAGTGAATAAatgaactt
gi|23 : ATTTCATAGTCTTAACTGGTTAAAGTCTTGTGTTAAAGAAAAGCTGAAAAACCAATTCGTACAAGAATGGAAatgaattgaa
gi|24 : AAGTTT--CGTAC--CACTA--ACCAT------CGCC---TG------CA-CGTTGAGAC-TGGTAAAAGG-
gi|26 : gGAAC--CTGTA--ATCAT------CGTT---TT------CC-TATAGAtttggtat
gi|3 : aAATCACAGGTAATGTTTTAAT-TAA----TGCATGTCTGAAAACTTATCT--TG----AA-ATCTTACC-T-GTGAAACTCA-GGAG-CATATTTTTGAAATTT--GGCAC--TACTA--ACCAC------TGCC---TG------TC-GGTGGAGAC-TGGTCGATGG-TTC-AG-TA-TACATAC-A-TGTATAATGAAAGATTG-TGTGTGTTGTGTAA---TGA--TAA-CAAAATAGCAGATGAATGTCATTTTTTTTTTTTGTT-AG-A--ATGC--AGTGC-TTTGTCTACA--ATAAGAAAAGAAT---AC---CTTCA-ACAAAA-ATATTGTA--CTAG---ACCAAAT---ACTGT-----GTTTA-AT-GAAAT-TATG----------T-----C--GAC-T-AG---TAATATT------AAAA-A------ACT---AAGAAA------CT-GTGGATCTTTATTTT--AA----AAAAATATG-AAA-AA--GTAT--G-TTC--T--CCT-TAATACAAAA---------T-TA-T-T-TTT--CTAT-TGTACGTTTT-A-T---GTATATTCTATT----------T---------CA-------------------------------TG-TA-TATA-------------TAC--A-TGTA-G--TTTTG-----T--TTGC---------------ATACC-T---ACATA---C-ACTCTTCGGACGT-TAT-T-----TGTACTTATAAAT-GTACCAATTTG--ATTG-T-GG--TTTGAGAGAATAA
gi|4 : aTGTATATATTAATTATAA--AAA-TTTTAACACAAATTTTG---GTTTAAAAAAT-ATTT-------------GTTG----------ATTTAAGGAT-CACGTTAACTAAATATAGCGATT--TTGTATAATGAT------CGCC---TTGAAATTCC-TGTAGAGGC-TGGTAGATGG-A-C-AA-CA-T---TAC-A-AG-G-AATTTGGGGACA-TGCACAAAGTGTGA---TTG--CA----GTAT--------AGTTTCATTATTTC------AC-GG-AGTATAC---ATTT-TTTTTTT-AA--ATCACAGAAAAAT---ATA---TCTA-ACGAAAGATTTTGGA--AAGG---CCTCA-----ATTAC-----GTTTG-AG-AAGTT-AATGA-ATACAAACTACAAAC--AATGT-AA---TATTTTT------AAAATC------ATT---TGT-GA------GT-TTT----------TT----------NNNNNNN-NNN-NNNNNNNN--N-NNN-NN--NNN-NNNN----NN---------NNNN-N-T-TGTTTTTGT-T-T--TTTGC-GCT---GCTTGTT-TTTCC---------TGAGCTTCTACGGCACTTACACCTAACAA------T--ACT--TT-TA-TTCAT---------TT-T-TCAA-TG-------CATA-----C--TTGT--ACATATTTTG-TGACCCT-TAC-TTACAACCTGTATATAT-----T-TGT-T-----TGACCCT---CAT-GTACCAA--TA--ATC--T-AG-TTTattgaactgaat
gi|5 : aGAAC--CTGAA--ATCAT------CACTGTTTT------CCATATAGGAACCTGGTCGATGGTAATTAA-TA-T---TGACATAG-AGAATTTAAGGATAATGTTCAATGTGTAA---TAAA-CAA-CAGAATCGGTGATGAATTTCATAATATT------AT-GG-A--A-GT--GATTT-TGTTTTCAAA--ACGACAGCAAAACATAACA--TTTTA-ATAAAAGGTTTT-TA--GAAAATCTCCCAACAGTATTATC--AAGCTTACATCGAACTAAATGACA-------TACAAACAAAATATCAGGGTTAATTTTTTCTAAGAAATTTTTCAAATTGGGGGCAAA------GT-TTG----------TTTAAA----GAAAATATTCTAATTGCTGTCT--GTCTC-TT--CCT---ATC---AA---------TGCA-C-T-TGTATC----G-TA-GTTAT-A-TTGAGCTTA-T-TGTTC-------------------CAGCAC------------A------T---CT--TGTTA-TATAT---------A-------A-TG-ACC--CCTTA-----C--TTGT-----------A-TGATACC-----TTATA---TGAATATTT-----T-TGT-T-----TGTA-CT---CATCGTACCAG--TG--ACC--C-GGTTTTTGAGTGAATAAaa
gi|6 : ATTATTT--TTTCCCAA-ATGTAGCCGT-G-AAGATTTAAGGAT-TATATTAACTAAATTG--AGAAC--GTGCA--ATCAT------CGTT---TT------CC-TAT-----------AGA---------------------------A-AATTTAAGAATA-TGTACAATGGGCAA---GAA--CAA-CAGCATTGGTGATGAATTTCATTTCATT------AT-GG-A--ATGT--GATGGGTTTTTTTCAA--AGGACAGCAAAAT---ACG--TCTTA-ATAAAAGGTTTTATA--AAAA---ACCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---CAATCTT------AAAATC------GTT---GGCAAA------GTGTTG----------TT--AG----AAACAT-TT-TAA-TGCTGTCT--G-CTCTTT--TCTGTACT----AAG--------TGTA-CAT-TG----TAT-C-TA-GTTAT-A-T---GCTTA-T-TGTTC---------T---------CA-CAC------------A------TACACT--CG-TA-TA-AT---------GTCTAT--A-TA-A-C--CTTTA-----C--TTGT--A--------ATTGAGAC--T---TTATA-----------------------------TGTACCT---CAT-GTACCAG--TG--ATT--T-GA-TTTTGAGTGATTAAatgaattgatgag
gi|7 : C--CTGTA--ATCAT------CGTT---TT------C--TATAGAAAC-TGGTAGATGG-AAT-AAATAAT---TGA-A-AG-A-AATTTAAGGATA-TGTACAATGT-TA----TAA--CAAACAGCATCGGTGATGA-TTTCATTATATT------ATTGG-A--ATGT--GATTT-TTTTTTCCAA---CGACAGAAAAAT---ACA--TTTTA-AATAAAGGTTTGGTAGAAAAA---TCCCAAC---ATTATCGAAAGTTTA-AT-GA-CTGAATGA-A-------TACAAAC--A-TAT-AG---TAATTCT------AAAATT------ATT---G-CAAA------GT-TTG----------TT--AA----AAAAGTATT-TAA-TGCTATCT--G-CT--TT--CCT-ATA-----AA---------TGCA-C-T-TA-----AT-C-TA-GTTATGA-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACTGTTG-TAATATAT---------GT-TAA--AGTG-A-C--C-TTA-----A--TTGT--A--------A-TGATAC--T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--CGGG-TTTTGAGTGAATa
gi|9 : -TGCTGTCTTTA-CTC-TTTACCT-AAA-----AA---------TG-A-C-TATGTAC----------------A-T---GTTT-CT-TGTTT---------T-----------ATAT------------A------T--ACA--AA-TA-TACAT---------GTGTAT--T-T----C--TTTTT-----CCATTGT--A--------A-T-ATACA-TGTATTATA---CAAGTAT--------------------G-ACCT---CAT-GTACCAA--TT--ATTGAT-GG--TGTGAGTGAATAAcaaatga
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCATTATATATACATGTATAAGAAAAACTAGTACGATATAGTACATGTATGACGATTATGACTATTGCTGATTTGCAGAAATACACTTTTCTTATATTGGATAAACCAGTGTTTTCTGATACAAAGAAAGCCATATTGTGCGCGACAAAATGTGATGAAATATGAAATTATGTCAGCCAGTCCCGTGAAAGATTGTGCACGTTTCAGTTACATATATCTGAATAAGGCTGTTCTCCTTAATTAACACAAAACTTCATTTTTGTGTACATATTTATATTTTACTTTGTTTATTTGTATGCCTATATACATGTACATTCCTGTGATTATGCATGTAATTTCTGTATACCGTACCTCATGCACCTCTGTCATTGTGGTTTGAACGAAAAAAAAGAAAAAAAAGAGCAAGAATTGAAAAAAC
Unaligned ( gi|12 ): TATGCGCTTTAAAAAAACAATTTTTACATCCTAGGTACTGTTCAAAGCCAAATATTATAAAATTTTCAGAATTAATGTCTTCTTCAAGTGTTAAAAAACTTAGAAACCTGTGCATGTTTACAACAAAAATATATGATCTAGTCTGACCTCCATAACCTAGGCATGAAGGCCTATACACCTCTTTTGCTTTCTTTTCCTGAAAATGACTATGTATATG
Unaligned ( gi|15 ): TGTGTATCTTTATTTCAAAAATATATGAAAATTATAGTCTGTTTTTCTTTTCTATTAATTGTAACATTTTATGTATATTCATGTATATATTTTATTTATTTCATTTGCATACCTACATATTATGACTCTTCTGACGTTATTTGTACTAATAAATGTAACTTTTGTATTG
Unaligned ( gi|20 ): TTATATATATATACATATGTATTACTTTTTCCATTTTTATATATCATTTGACTTCTTGTACCAATTATTGATGGTACGAGAGAATAAAGAAACTTGAA
Unaligned ( gi|21 ): TACCATATATTTTTTTTTGTTACAACACAGTGCTTTATCTGACATGAGAAAAGAATACCTACACAGCAAATATTGTACAAGTCCAAATA
Unaligned ( gi|25 ): TAGAAACTTGAAATTATGTACTCTTTGTAACAA
Alignments
lowQualScore : 1 11 1111 111 22222222222222 11111 1111 1111111111111 11111111111111 11 1 111111 1111 111 1 2222222222 111 1111111 11111111 111 111111 222222222222222222222 333333333333333333333333333333333333333333333 33333333333333333333333333333333333333333333 222222222222 1111111 11111111 11111111111 222222 11111 11
lowQualScore : 1 1 0 1 2 1 5 7 1 11 8 11 6666 111 3 3 33333333333333 77777 0 555 77 3 1111 66 1 55 11 44 6666 555 1111111111111 1 0 3 99999 4 4 22222222222222 4 777 0 00 4 0 6 2 222222 4 4 66 66 3 4 2 66 888 4444 5 2 0 66 9999 888 222 5 5 1 7777777777 5 99999999 000 0 6666666 99999999 000 1 666666 5 777777777777777777777 2 5 66 0 66 5 4 66 333333333333333333333333333333333333333333333 4 4 777 3 4 00000000000000000000000000000000000000000000 55 55 4 4 000000000000 6666 4 0000000 3 11111111 88888888888 3 444444 9999999 88888 3 3 22222 555 3 55 88 22 3 88
lowQualScore : . . . . . . . . . .. . .. .... ... . . .............. ..... . ... .. . .... .. . .. .. .. .... ... ............. . . . ..... . . .............. . ... . .. . . . . ...... . . .. .. . . . .. ... .... . . . .. .... ... ... . . . .......... . ........ ... . ....... ........ ... . ...... . ..................... . . .. . .. . . .. ............................................. . . ... . . ............................................ .. .. . . ............ .... . ....... . ........ ........... . ...... ....... ..... . . ..... ... . .. .. .. . ..
lowQualScore : 0 0 7 0 5 0 0 3 0 00 0 88 5555 777 7 7 00000000000000 77777 4 999 00 9 1111 99 0 00 00 22 5555 444 8888888888888 1 8 3 88888 0 0 66666666666666 4 888 1 66 4 2 4 1 888888 4 4 11 11 6 4 5 99 888 0000 0 2 2 99 8888 888 555 0 0 4 1111111111 0 77777777 000 3 6666666 66666666 000 7 444444 7 111111111111111111111 9 7 66 8 99 0 4 11 000000000000000000000000000000000000000000000 4 4 888 8 0 55555555555555555555555555555555555555555555 55 55 0 0 555555555555 2222 0 9999999 0 22222222 11111111111 6 333333 8888888 33333 3 3 99999 888 6 00 66 33 6 00
consensus : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAAATTTTG---GTCTGGAAAATTATTT--TG----AA-ATNTTGCC-T-G-AAGATTTAAGGAT-TATATTNNCTAAATTT--CGAAC--CTGTA--ATCAT----CGCC---TT------C----C-TGTAGAGAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-NAAT----AA---------TGCA-C-T-TGTACCTAT-C-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATACN-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
Reference ( family-75 ) : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAAATTTTG---GTCTGGAAAATTATTT--TG----AA-ATNTTGCC-T-G-AAGATTTAAGGAT-TATATTNNCTAAATTT--CGAAC--CTGTA--ATCAT----CGCC---TT------C----C-TGTAGAGAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-NAAT----AA---------TGCA-C-T-TGTACCTAT-C-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATACN-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|1 : ATTTCATAGCCTTAAATGGTTAAAGTGTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAGGAATGGAATAGTATTGTCAATGATTC-GTGTAAATATATTAATTATAG--AAT-TTTCAAAACAAATTTTG---GTATAGAAAATTATTTATTG----AA---TTTGCC-T-A-AAGATTTAAGGAT-TACATTAGCTAAATTG--AGAAC--CTGTA--ATCAT----TGTT---TT------C----C-TATAGAAAC-TGGTAGATGG-AAT-AA-TA-T---TGA-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTCA-AAAAAAGATTTTGTA--AAAA---TCCCAAC---ATGATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT-------AAATC------ATT---GGCAAA------GT-TTG----------TT--AA----GATAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-AAAT----AA---------TGCA-C-G-TGTACCTATAC-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TT-A-C--CCTTA-----C--TTGT--A--------A-TGATACT-T---TTATA---TGGATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|10 : TA--ATCAC----CACC---TT------C----C-TGTTGAAGT-AGGCAGATGG-AAA-AA-CA-C---TTT-A-AG-A-AATGAACGCTTA-TGTACATTATGCAACTGTAA--C---CAA-ATTGGTGATGAATTTCATTTTATT------CT-TG-A--ATGTAAGACTT-T
gi|11 : aaactac-TT--CCT-GACT----AA---------TGCA-C-T-TGTACCTA-------GTTGT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TG-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATAC--------------------TTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTAAATAAgtgtaaattgcgtagagatttttttggtatagaatattgttctgctccaaacaccaaaacattttgtgaaattatgtcttccaaacaccctgtacaagttgaaagaaagttgtgtctttttattacgaaaatcaacaatattgtctgcttgacccctgtactttgtaattatt
gi|13 : gaaataataatgtttccaataataattttgatacagaataataaaacatgaccaaatatgattaactacatgtataatagttataaccgttgcatcaggtctaaagatcatatactccttgtgacagaatatcgagACA---TGAA-ATTT-----C-TGTATAA---TGTTCCC---CAT-GTGCCAA--TGTCATTG-T-GG-TTT-GAGTAAATAAatgaattgaatcgagc
gi|14 : aatgaatctgttctccttcacaaaaattcatttatcaaaatatattacattttactacaatattgtgtgtttgaatgcctacgtgcattcctttgctgttacttattctatgTGTTAAGGAAGCACTGAAGAACCAGTTTGTTCAAGAACGGCACAGCTCTGTAGAAAATTCCACG-ACATGTATTAATTACAG--GAT-TTTTAAGAC----------------GACGATTA-TT--TG----AATAAATTACC-T-A-AAG--TTGA-----TAT--------AATTT--CGAAC--AACAA--ATCATATACTACC---TT------TGATAT-TGTA---AC-AGGCAGATGG-AAC-AA-TA-T---Taaatcaaagaatgagtaaaatcatcgataaagac
gi|16 : tTTACAG--AAT-TTTTAAAAC----TTTG---GTTTGGAAACTTATTT--TG----AA-AGCTTATC-T-GTGAAACTC-AGAAG-TATATTTTAGAAATTT--CGCACTACTATA--ACCAC----CGCC---TG------C----C-AGTGGAGAC-TGGT
gi|17 : atGAATTTCATTATATC------AT-GG-A--ATGT--GA-TT-TTTTTTTCAA--ACGACGGAAAAAT---ACATTTTTTA-ATAAAAGGTTTTGT---AAAA---TCCCAAC---ATTATC--AAGTTTA-AT-GAAcg
gi|18 : ATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATATACATTGTATGT-TAT--A-TG-A-C--CTTTATATTAC--TTGT--A--------A-TGATACG-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CA
gi|19 : TA--ATCAT----TGAT---TT------C------TATAGAAAC-TGATATATGA-AAT-GA-TA-T---TCA-A-GG-A-AGCTTAAGGACA-TCTA-AATGTGTGA---TTG--CAA-TAGTATATGAGATGAATT
gi|2 : aCAAATTTTG---GGCTTGAAAAATATTT--AG----AA-GTATTGCC-TTA-AAAATTTA--GATCTATTTTTCTCAAATTT--CGTAC--CACAA--ATCAC----CACC---TT------C----C-AGTAGAGGC-TGGTAGATGG-GCC-AA-TA-T---TCT-A-TA-T-AATGAAAGGTTT-TGTGTCTTGTGTAA---TGAATTAA-AAG--TTGCGGATGAATTCCATTATA-T------AT-GACA--ATAC--AG--T-GCTTTGTCAAATATGAGAAAAGAAT---AC-----CTACACAGCAGGTACTACA--CAAG---ACCAAAT---GCTGTA--AAATTTC-AT-GAAAT-TATG----------T-CAACC--------AG---TGAGGTT------AAAA-C------ACT---AAAAAAAACTTTGT-ATG----------TT--CATTTCCAAAATCTA-TGA-----GTAT--G--TC-CT--CCT-TAAC----AAATTAAAACCTACATT-T-TGTATTTAT-T-TA---TAT-A-T---CCTCCCC-CCCCCCCCCCCATAT---------CACTAC------------ATGGTTTT--ATT--CG-TG-TGTGT---------AT-T-T--A-T--A-CTTCTTTC-----T--TTGTCAA--------A-TG-TACG-T---T-----------TATTT-----T-TAT-TCAATGTATACCT---CAT-GTACCAC--AGA-ATG--T-GG--TTTAAGCGAATAA
gi|22 : tgtttaattcatcGT--A--------A-TGATACTAT---TTATA---TGAATATTT-----TTTGT-T-----TGTACCT---TAT-GTACCAG--TG--ATC--T--G-TTTTGAGTGAATAAatgaactt
gi|23 : ATTTCATAGTCTTAACTGGTTAAAGTCTTGTGTTAAAGAAAAGCTGAAAAACCAATTCGTACAAGAATGGAAatgaattgaa
gi|24 : AAGTTT--CGTAC--CACTA--ACCAT----CGCC---TG------C----A-CGTTGAGAC-TGGTAAAAGG-
gi|26 : gGAAC--CTGTA--ATCAT----CGTT---TT------C----C-TATAGAtttggtat
gi|3 : aAATCACAGGTAATGTTTTAAT-TAA----TGCATGTCTGAAAACTTATCT--TG----AA-ATCTTACC-T-GTGAAACTCA-GGAG-CATATTTTTGAAATTT--GGCAC--TACTA--ACCAC----TGCC---TG------T----C-GGTGGAGAC-TGGTCGATGG-TTC-AG-TA-TACATAC-A-TGTATAATGAAAGATTG-TGTGTGTTGTGTAA---TGA--TAA-CAAAATAGCAGATGAATGTCATTTTTTTTTTTTGTT-AG-A--ATGC--AGTGC-TTTGTCTACA--ATAAGAAAAGAAT---AC---CTTCA-ACAAAA-ATATTGTA--CTAG---ACCAAAT---ACTGT-----GTTTA-AT-GAAAT-TATG----------T-----C--GAC-T-AG---TAATATT------AAAA-A------ACT---AAGAAA------CT-GTGGATCTTTATTTT--AA----AAAAATATG-AAA-AA--GTAT--G-TTC--T--CCT-TAATACAAAA---------T-TA-T-T-TTT--CTAT-TGTACGTTTT-A-T---GTATATTCTATT----------T---------CA-------------------------------TG-TA-TATA-------------TAC--A-TGTA-G--TTTTG-----T--TTGC---------------ATACC-T---ACATA---C-ACTCTTCGGACGT-TAT-T-----TGTACTTATAAAT-GTACCAATTTG--ATTG-T-GG--TTTGAGAGAATAA
gi|4 : aTGTATATATTAATTATAA--AAA-TTTTAACACAAATTTTG---GTTTAAAAAAT-ATTT-------------GTTG----------ATTTAAGGAT-CACGTTAACTAAATATAGCGATT--TTGTATAATGAT----CGCC---TTGAAATTC----C-TGTAGAGGC-TGGTAGATGG-A-C-AA-CA-T---TAC-A-AG-G-AATTTGGGGACA-TGCACAAAGTGTGA---TTG--CA----GTAT--------AGTTTCATTATTTC------AC-GG-AGTATAC---ATTT-TTTTTTT-AA--ATCACAGAAAAAT---ATA---TCTA-ACGAAAGATTTTGGA--AAGG---CCTCA-----ATTAC-----GTTTG-AG-AAGTT-AATGA-ATACAAACTACAAAC--AATGT-AA---TATTTTT------AAAATC------ATT---TGT-GA------GT-TTT----------TT----------NNNNNNN-NNN-NNNNNNNN--N-NNN-NN--NNN-NNNN----NN---------NNNN-N-T-TGTTTTTGT-T-T--TTTGC-GCT---GCTTGTT-TTTCC---------TGAGCTTCTACGGCACTTACACCTAACAA------T--ACT--TT-TA-TTCAT---------TT-T-TCAA-TG-------CATA-----C--TTGT--ACATATTTTG-TGACCCT-TAC-TTACAACCTGTATATAT-----T-TGT-T-----TGACCCT---CAT-GTACCAA--TA--ATC--T-AG-TTTattgaactgaat
gi|5 : aGAAC--CTGAA--ATCAT----CACTGTTTT------C----CATATAGGAACCTGGTCGATGGTAATTAA-TA-T---TGACATAG-AGAATTTAAGGATAATGTTCAATGTGTAA---TAAA-CAA-CAGAATCGGTGATGAATTTCATAATATT------AT-GG-A--A-GT--GATTT-TGTTTTCAAA--ACGACAGCAAAACATAACA--TTTTA-ATAAAAGGTTTT-TA--GAAAATCTCCCAACAGTATTATC--AAGCTTACATCGAACTAAATGACA-------TACAAACAAAATATCAGGGTTAATTTTTTCTAAGAAATTTTTCAAATTGGGGGCAAA------GT-TTG----------TTTAAA----GAAAATATTCTAATTGCTGTCT--GTCTC-TT--CCT---ATC---AA---------TGCA-C-T-TGTATC----G-TA-GTTAT-A-TTGAGCTTA-T-TGTTC-------------------CAGCAC------------A------T---CT--TGTTA-TATAT---------A-------A-TG-ACC--CCTTA-----C--TTGT-----------A-TGATACC-----TTATA---TGAATATTT-----T-TGT-T-----TGTA-CT---CATCGTACCAG--TG--ACC--C-GGTTTTTGAGTGAATAAaa
gi|6 : ATTATTT--TTTCCCAA-ATGTAGCCGT-G-AAGATTTAAGGAT-TATATTAACTAAATTG--AGAAC--GTGCA--ATCAT----CGTT---TT------C----C-TAT-----------AGA---------------------------A-AATTTAAGAATA-TGTACAATGGGCAA---GAA--CAA-CAGCATTGGTGATGAATTTCATTTCATT------AT-GG-A--ATGT--GATGGGTTTTTTTCAA--AGGACAGCAAAAT---ACG--TCTTA-ATAAAAGGTTTTATA--AAAA---ACCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---CAATCTT------AAAATC------GTT---GGCAAA------GTGTTG----------TT--AG----AAACAT-TT-TAA-TGCTGTCT--G-CTCTTT--TCTGTACT----AAG--------TGTA-CAT-TG----TAT-C-TA-GTTAT-A-T---GCTTA-T-TGTTC---------T---------CA-CAC------------A------TACACT--CG-TA-TA-AT---------GTCTAT--A-TA-A-C--CTTTA-----C--TTGT--A--------ATTGAGAC--T---TTATA-----------------------------TGTACCT---CAT-GTACCAG--TG--ATT--T-GA-TTTTGAGTGATTAAatgaattgatgag
gi|7 : C--CTGTA--ATCAT----CGTT---TT------C------TATAGAAAC-TGGTAGATGG-AAT-AAATAAT---TGA-A-AG-A-AATTTAAGGATA-TGTACAATGT-TA----TAA--CAAACAGCATCGGTGATGA-TTTCATTATATT------ATTGG-A--ATGT--GATTT-TTTTTTCCAA---CGACAGAAAAAT---ACA--TTTTA-AATAAAGGTTTGGTAGAAAAA---TCCCAAC---ATTATCGAAAGTTTA-AT-GA-CTGAATGA-A-------TACAAAC--A-TAT-AG---TAATTCT------AAAATT------ATT---G-CAAA------GT-TTG----------TT--AA----AAAAGTATT-TAA-TGCTATCT--G-CT--TT--CCT-ATA-----AA---------TGCA-C-T-TA-----AT-C-TA-GTTATGA-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACTGTTG-TAATATAT---------GT-TAA--AGTG-A-C--C-TTA-----A--TTGT--A--------A-TGATAC--T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--CGGG-TTTTGAGTGAATa
gi|9 : -TGCTGTCTTTA-CTC-TTTACCT-AAA-----AA---------TG-A-C-TATGTAC----------------A-T---GTTT-CT-TGTTT---------T-----------ATAT------------A------T--ACA--AA-TA-TACAT---------GTGTAT--T-T----C--TTTTT-----CCATTGT--A--------A-T-ATACA-TGTATTATA---CAAGTAT--------------------G-ACCT---CAT-GTACCAA--TT--ATTGAT-GG--TGTGAGTGAATAAcaaatga
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCATTATATATACATGTATAAGAAAAACTAGTACGATATAGTACATGTATGACGATTATGACTATTGCTGATTTGCAGAAATACACTTTTCTTATATTGGATAAACCAGTGTTTTCTGATACAAAGAAAGCCATATTGTGCGCGACAAAATGTGATGAAATATGAAATTATGTCAGCCAGTCCCGTGAAAGATTGTGCACGTTTCAGTTACATATATCTGAATAAGGCTGTTCTCCTTAATTAACACAAAACTTCATTTTTGTGTACATATTTATATTTTACTTTGTTTATTTGTATGCCTATATACATGTACATTCCTGTGATTATGCATGTAATTTCTGTATACCGTACCTCATGCACCTCTGTCATTGTGGTTTGAACGAAAAAAAAGAAAAAAAAGAGCAAGAATTGAAAAAAC
Unaligned ( gi|12 ): TATGCGCTTTAAAAAAACAATTTTTACATCCTAGGTACTGTTCAAAGCCAAATATTATAAAATTTTCAGAATTAATGTCTTCTTCAAGTGTTAAAAAACTTAGAAACCTGTGCATGTTTACAACAAAAATATATGATCTAGTCTGACCTCCATAACCTAGGCATGAAGGCCTATACACCTCTTTTGCTTTCTTTTCCTGAAAATGACTATGTATATG
Unaligned ( gi|15 ): TGTGTATCTTTATTTCAAAAATATATGAAAATTATAGTCTGTTTTTCTTTTCTATTAATTGTAACATTTTATGTATATTCATGTATATATTTTATTTATTTCATTTGCATACCTACATATTATGACTCTTCTGACGTTATTTGTACTAATAAATGTAACTTTTGTATTG
Unaligned ( gi|20 ): TTATATATATATACATATGTATTACTTTTTCCATTTTTATATATCATTTGACTTCTTGTACCAATTATTGATGGTACGAGAGAATAAAGAAACTTGAA
Unaligned ( gi|21 ): TACCATATATTTTTTTTTGTTACAACACAGTGCTTTATCTGACATGAGAAAAGAATACCTACACAGCAAATATTGTACAAGTCCAAATA
Unaligned ( gi|25 ): TAGAAACTTGAAATTATGTACTCTTTGTAACAA
Alignments
lowQualScore : 1 11 1111 111 22222222222222 11111 1111 1111111111111 11111111111111 11 1 111111 1111 111 1 2222222222 111 1111111 11111111 111 111111 222222222222222222222 333333333333333333333333333333333333333333333 33333333333333333333333333333333333333333333 222222222222 1111111 11111111 11111111111 222222 11111 11
lowQualScore : 1 1 0 1 2 1 5 7 1 11 8 11 6666 111 3 3 33333333333333 77777 0 555 77 3 1111 66 1 55 11 44 6666 555 1111111111111 1 0 3 99999 4 4 22222222222222 4 777 0 00 4 0 6 2 222222 4 4 66 66 3 4 2 66 888 4444 5 2 0 66 9999 888 222 5 5 1 7777777777 5 99999999 000 0 6666666 99999999 000 1 666666 5 777777777777777777777 2 5 66 0 66 5 4 66 333333333333333333333333333333333333333333333 4 4 777 3 4 00000000000000000000000000000000000000000000 55 55 4 4 000000000000 6666 4 0000000 3 11111111 88888888888 3 444444 9999999 88888 3 3 22222 555 3 55 88 22 3 88
lowQualScore : . . . . . . . . . .. . .. .... ... . . .............. ..... . ... .. . .... .. . .. .. .. .... ... ............. . . . ..... . . .............. . ... . .. . . . . ...... . . .. .. . . . .. ... .... . . . .. .... ... ... . . . .......... . ........ ... . ....... ........ ... . ...... . ..................... . . .. . .. . . .. ............................................. . . ... . . ............................................ .. .. . . ............ .... . ....... . ........ ........... . ...... ....... ..... . . ..... ... . .. .. .. . ..
lowQualScore : 0 0 7 0 5 0 0 3 0 00 0 88 5555 777 7 7 00000000000000 77777 4 999 00 9 1111 99 0 00 00 22 5555 444 8888888888888 1 8 3 88888 0 0 66666666666666 4 888 1 66 4 2 4 1 888888 4 4 11 11 6 4 5 99 888 0000 0 2 2 99 8888 888 555 0 0 4 1111111111 0 77777777 000 3 6666666 66666666 000 7 444444 7 111111111111111111111 9 7 66 8 99 0 4 11 000000000000000000000000000000000000000000000 4 4 888 8 0 55555555555555555555555555555555555555555555 55 55 0 0 555555555555 2222 0 9999999 0 22222222 11111111111 6 333333 8888888 33333 3 3 99999 888 6 00 66 33 6 00
consensus : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAAATTTTG---GTCTGGAAAATTATTT--TG----AA-ATNTTGCC-T-G-AAGATTTAAGGAT-TATATTNNCTAAATTT--CGAAC--CTGTA--ATCAT----CGCC---TT------C----C-TGTAGAGAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-NAAT----AA---------TGCA-C-T-TGTACCTAT-C-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATACN-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
Reference ( family-75 ) : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAAATTTTG---GTCTGGAAAATTATTT--TG----AA-ATNTTGCC-T-G-AAGATTTAAGGAT-TATATTNNCTAAATTT--CGAAC--CTGTA--ATCAT----CGCC---TT------C----C-TGTAGAGAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-NAAT----AA---------TGCA-C-T-TGTACCTAT-C-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATACN-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|1 : ATTTCATAGCCTTAAATGGTTAAAGTGTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAGGAATGGAATAGTATTGTCAATGATTC-GTGTAAATATATTAATTATAG--AAT-TTTCAAAACAAATTTTG---GTATAGAAAATTATTTATTG----AA---TTTGCC-T-A-AAGATTTAAGGAT-TACATTAGCTAAATTG--AGAAC--CTGTA--ATCAT----TGTT---TT------C----C-TATAGAAAC-TGGTAGATGG-AAT-AA-TA-T---TGA-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTCA-AAAAAAGATTTTGTA--AAAA---TCCCAAC---ATGATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT-------AAATC------ATT---GGCAAA------GT-TTG----------TT--AA----GATAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-AAAT----AA---------TGCA-C-G-TGTACCTATAC-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TT-A-C--CCTTA-----C--TTGT--A--------A-TGATACT-T---TTATA---TGGATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|10 : TA--ATCAC----CACC---TT------C----C-TGTTGAAGT-AGGCAGATGG-AAA-AA-CA-C---TTT-A-AG-A-AATGAACGCTTA-TGTACATTATGCAACTGTAA--C---CAA-ATTGGTGATGAATTTCATTTTATT------CT-TG-A--ATGTAAGACTT-T
gi|11 : aaactac-TT--CCT-GACT----AA---------TGCA-C-T-TGTACCTA-------GTTGT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TG-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATAC--------------------TTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTAAATAAgtgtaaattgcgtagagatttttttggtatagaatattgttctgctccaaacaccaaaacattttgtgaaattatgtcttccaaacaccctgtacaagttgaaagaaagttgtgtctttttattacgaaaatcaacaatattgtctgcttgacccctgtactttgtaattatt
gi|13 : gaaataataatgtttccaataataattttgatacagaataataaaacatgaccaaatatgattaactacatgtataatagttataaccgttgcatcaggtctaaagatcatatactccttgtgacagaatatcgagACA---TGAA-ATTT-----C-TGTATAA---TGTTCCC---CAT-GTGCCAA--TGTCATTG-T-GG-TTT-GAGTAAATAAatgaattgaatcgagc
gi|14 : aatgaatctgttctccttcacaaaaattcatttatcaaaatatattacattttactacaatattgtgtgtttgaatgcctacgtgcattcctttgctgttacttattctatgTGTTAAGGAAGCACTGAAGAACCAGTTTGTTCAAGAACGGCACAGCTCTGTAGAAAATTCCACG-ACATGTATTAATTACAG--GAT-TTTTAAGAC----------------GACGATTA-TT--TG----AATAAATTACC-T-A-AAG--TTGA-----TAT--------AATTT--CGAAC--AACAA--ATCATATACTACC---TT------TGATAT-TGTA---AC-AGGCAGATGG-AAC-AA-TA-T---Taaatcaaagaatgagtaaaatcatcgataaagac
gi|16 : tTTACAG--AAT-TTTTAAAAC----TTTG---GTTTGGAAACTTATTT--TG----AA-AGCTTATC-T-GTGAAACTC-AGAAG-TATATTTTAGAAATTT--CGCACTACTATA--ACCAC----CGCC---TG------C----C-AGTGGAGAC-TGGT
gi|17 : atGAATTTCATTATATC------AT-GG-A--ATGT--GA-TT-TTTTTTTCAA--ACGACGGAAAAAT---ACATTTTTTA-ATAAAAGGTTTTGT---AAAA---TCCCAAC---ATTATC--AAGTTTA-AT-GAAcg
gi|18 : ATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATATACATTGTATGT-TAT--A-TG-A-C--CTTTATATTAC--TTGT--A--------A-TGATACG-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CA
gi|19 : TA--ATCAT----TGAT---TT------C------TATAGAAAC-TGATATATGA-AAT-GA-TA-T---TCA-A-GG-A-AGCTTAAGGACA-TCTA-AATGTGTGA---TTG--CAA-TAGTATATGAGATGAATT
gi|2 : aCAAATTTTG---GGCTTGAAAAATATTT--AG----AA-GTATTGCC-TTA-AAAATTTA--GATCTATTTTTCTCAAATTT--CGTAC--CACAA--ATCAC----CACC---TT------C----C-AGTAGAGGC-TGGTAGATGG-GCC-AA-TA-T---TCT-A-TA-T-AATGAAAGGTTT-TGTGTCTTGTGTAA---TGAATTAA-AAG--TTGCGGATGAATTCCATTATA-T------AT-GACA--ATAC--AG--T-GCTTTGTCAAATATGAGAAAAGAAT---AC-----CTACACAGCAGGTACTACA--CAAG---ACCAAAT---GCTGTA--AAATTTC-AT-GAAAT-TATG----------T-CAACC--------AG---TGAGGTT------AAAA-C------ACT---AAAAAAAACTTTGT-ATG----------TT--CATTTCCAAAATCTA-TGA-----GTAT--G--TC-CT--CCT-TAAC----AAATTAAAACCTACATT-T-TGTATTTAT-T-TA---TAT-A-T---CCTCCCC-CCCCCCCCCCCATAT---------CACTAC------------ATGGTTTT--ATT--CG-TG-TGTGT---------AT-T-T--A-T--A-CTTCTTTC-----T--TTGTCAA--------A-TG-TACG-T---T-----------TATTT-----T-TAT-TCAATGTATACCT---CAT-GTACCAC--AGA-ATG--T-GG--TTTAAGCGAATAA
gi|22 : tgtttaattcatcGT--A--------A-TGATACTAT---TTATA---TGAATATTT-----TTTGT-T-----TGTACCT---TAT-GTACCAG--TG--ATC--T--G-TTTTGAGTGAATAAatgaactt
gi|23 : ATTTCATAGTCTTAACTGGTTAAAGTCTTGTGTTAAAGAAAAGCTGAAAAACCAATTCGTACAAGAATGGAAatgaattgaa
gi|24 : AAGTTT--CGTAC--CACTA--ACCAT----CGCC---TG------C----A-CGTTGAGAC-TGGTAAAAGG-
gi|26 : gGAAC--CTGTA--ATCAT----CGTT---TT------C----C-TATAGAtttggtat
gi|3 : aAATCACAGGTAATGTTTTAAT-TAA----TGCATGTCTGAAAACTTATCT--TG----AA-ATCTTACC-T-GTGAAACTCA-GGAG-CATATTTTTGAAATTT--GGCAC--TACTA--ACCAC----TGCC---TG------T----C-GGTGGAGAC-TGGTCGATGG-TTC-AG-TA-TACATAC-A-TGTATAATGAAAGATTG-TGTGTGTTGTGTAA---TGA--TAA-CAAAATAGCAGATGAATGTCATTTTTTTTTTTTGTT-AG-A--ATGC--AGTGC-TTTGTCTACA--ATAAGAAAAGAAT---AC---CTTCA-ACAAAA-ATATTGTA--CTAG---ACCAAAT---ACTGT-----GTTTA-AT-GAAAT-TATG----------T-----C--GAC-T-AG---TAATATT------AAAA-A------ACT---AAGAAA------CT-GTGGATCTTTATTTT--AA----AAAAATATG-AAA-AA--GTAT--G-TTC--T--CCT-TAATACAAAA---------T-TA-T-T-TTT--CTAT-TGTACGTTTT-A-T---GTATATTCTATT----------T---------CA-------------------------------TG-TA-TATA-------------TAC--A-TGTA-G--TTTTG-----T--TTGC---------------ATACC-T---ACATA---C-ACTCTTCGGACGT-TAT-T-----TGTACTTATAAAT-GTACCAATTTG--ATTG-T-GG--TTTGAGAGAATAA
gi|4 : aTGTATATATTAATTATAA--AAA-TTTTAACACAAATTTTG---GTTTAAAAAAT-ATTT-------------GTTG----------ATTTAAGGAT-CACGTTAACTAAATATAGCGATT--TTGTATAATGAT----CGCC---TTGAAATTC----C-TGTAGAGGC-TGGTAGATGG-A-C-AA-CA-T---TAC-A-AG-G-AATTTGGGGACA-TGCACAAAGTGTGA---TTG--CA----GTAT--------AGTTTCATTATTTC------AC-GG-AGTATAC---ATTT-TTTTTTT-AA--ATCACAGAAAAAT---ATA---TCTA-ACGAAAGATTTTGGA--AAGG---CCTCA-----ATTAC-----GTTTG-AG-AAGTT-AATGA-ATACAAACTACAAAC--AATGT-AA---TATTTTT------AAAATC------ATT---TGT-GA------GT-TTT----------TT----------NNNNNNN-NNN-NNNNNNNN--N-NNN-NN--NNN-NNNN----NN---------NNNN-N-T-TGTTTTTGT-T-T--TTTGC-GCT---GCTTGTT-TTTCC---------TGAGCTTCTACGGCACTTACACCTAACAA------T--ACT--TT-TA-TTCAT---------TT-T-TCAA-TG-------CATA-----C--TTGT--ACATATTTTG-TGACCCT-TAC-TTACAACCTGTATATAT-----T-TGT-T-----TGACCCT---CAT-GTACCAA--TA--ATC--T-AG-TTTattgaactgaat
gi|5 : aGAAC--CTGAA--ATCAT----CACTGTTTT------C----CATATAGGAACCTGGTCGATGGTAATTAA-TA-T---TGACATAG-AGAATTTAAGGATAATGTTCAATGTGTAA---TAAA-CAA-CAGAATCGGTGATGAATTTCATAATATT------AT-GG-A--A-GT--GATTT-TGTTTTCAAA--ACGACAGCAAAACATAACA--TTTTA-ATAAAAGGTTTT-TA--GAAAATCTCCCAACAGTATTATC--AAGCTTACATCGAACTAAATGACA-------TACAAACAAAATATCAGGGTTAATTTTTTCTAAGAAATTTTTCAAATTGGGGGCAAA------GT-TTG----------TTTAAA----GAAAATATTCTAATTGCTGTCT--GTCTC-TT--CCT---ATC---AA---------TGCA-C-T-TGTATC----G-TA-GTTAT-A-TTGAGCTTA-T-TGTTC-------------------CAGCAC------------A------T---CT--TGTTA-TATAT---------A-------A-TG-ACC--CCTTA-----C--TTGT-----------A-TGATACC-----TTATA---TGAATATTT-----T-TGT-T-----TGTA-CT---CATCGTACCAG--TG--ACC--C-GGTTTTTGAGTGAATAAaa
gi|6 : ATTATTT--TTTCCCAA-ATGTAGCCGT-G-AAGATTTAAGGAT-TATATTAACTAAATTG--AGAAC--GTGCA--ATCAT----CGTT---TT------C----C-TAT-----------AGA---------------------------A-AATTTAAGAATA-TGTACAATGGGCAA---GAA--CAA-CAGCATTGGTGATGAATTTCATTTCATT------AT-GG-A--ATGT--GATGGGTTTTTTTCAA--AGGACAGCAAAAT---ACG--TCTTA-ATAAAAGGTTTTATA--AAAA---ACCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---CAATCTT------AAAATC------GTT---GGCAAA------GTGTTG----------TT--AG----AAACAT-TT-TAA-TGCTGTCT--G-CTCTTT--TCTGTACT----AAG--------TGTA-CAT-TG----TAT-C-TA-GTTAT-A-T---GCTTA-T-TGTTC---------T---------CA-CAC------------A------TACACT--CG-TA-TA-AT---------GTCTAT--A-TA-A-C--CTTTA-----C--TTGT--A--------ATTGAGAC--T---TTATA-----------------------------TGTACCT---CAT-GTACCAG--TG--ATT--T-GA-TTTTGAGTGATTAAatgaattgatgag
gi|7 : C--CTGTA--ATCAT----CGTT---TT------C------TATAGAAAC-TGGTAGATGG-AAT-AAATAAT---TGA-A-AG-A-AATTTAAGGATA-TGTACAATGT-TA----TAA--CAAACAGCATCGGTGATGA-TTTCATTATATT------ATTGG-A--ATGT--GATTT-TTTTTTCCAA---CGACAGAAAAAT---ACA--TTTTA-AATAAAGGTTTGGTAGAAAAA---TCCCAAC---ATTATCGAAAGTTTA-AT-GA-CTGAATGA-A-------TACAAAC--A-TAT-AG---TAATTCT------AAAATT------ATT---G-CAAA------GT-TTG----------TT--AA----AAAAGTATT-TAA-TGCTATCT--G-CT--TT--CCT-ATA-----AA---------TGCA-C-T-TA-----AT-C-TA-GTTATGA-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACTGTTG-TAATATAT---------GT-TAA--AGTG-A-C--C-TTA-----A--TTGT--A--------A-TGATAC--T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--CGGG-TTTTGAGTGAATa
gi|9 : -TGCTGTCTTTA-CTC-TTTACCT-AAA-----AA---------TG-A-C-TATGTAC----------------A-T---GTTT-CT-TGTTT---------T-----------ATAT------------A------T--ACA--AA-TA-TACAT---------GTGTAT--T-T----C--TTTTT-----CCATTGT--A--------A-T-ATACA-TGTATTATA---CAAGTAT--------------------G-ACCT---CAT-GTACCAA--TT--ATTGAT-GG--TGTGAGTGAATAAcaaatga
blockSeqs : C C T A A C T C GT G GA AAAT CAT T G TTTCCCAAATG TGT AAG TC A TTAG AG A TA AC TA ATAC GTT GAAATTCC T C TAATT A A ACATACATGTAT A CTG AT A T T T TTTTTG T C GT AA C G C AT ATA ATTT C T GA ATCT AGT CGA C C A AATACAAAC A AAAATATC GGT TTCTAAG TTTTTCAA GGG A AACTTT G GATCTTTATTTTAAA C C TT TT T T TA TAACAAATTAAAACCTACATTTTGTATTTATTTA G C TGA T C TGAGCTTCTACGGCACTTACACCTAACAA AC GT T A ACATTGTATGT TCA G ACTT C TATTAC ACATATTTT T ATGTA ACCTGTA GGACG T A CAATG ATA C TT TC GA G TT
blockSeqs : . T . . AA AAAT . C T TGAATAAA TTA AAG G T TCTC . C . TA . . . TGATAT A . AAA . . TGACATAGAG . . A . A A A . . . . . T . C . . AT . C . T . C . . G ACA A AATGT . A TC . A . . TTCATTTCC A . A . . . . TAATACAAAATTATTTTTCTATTGTACG . . . T . CCCCCCATATCACTACATGGTTT . . . . GTC AT . GTAG T CCA CAA . TTAC TGAA . . . AA . . . A G . T
blockSeqs : . . CA AA . C G TGAAAGC TGT GA G A TTTG . T . AC . . . CCA G . AAC . . TTTAAGA . . . . T T G . . . . . T . A . . GT . C . A . A . . . AA A AATAT . A TC . G . . TTTAAAG N . N . . . . NNNNNNNNNNNTTGTTTTTGTTTT . . . C . TCAGCACA . . . . GTG AT . GACC T C A . TAT TGAA . . . . . . . . G . T
blockSeqs : . . T . . T A AGAAGTA GTG AG T G AACT . T . AC . . . CC A . AAT . . TCAAGGA . . . . A A A . . . . . T . A . . AT . C . A . C . . . AA A GACT . A TT . G . . TTAGA A . T . . . . GTACTAAGTGTACATTGTATCTAG . . . T . TCAGCACA . . . . GT AC . GAC T T A . GT TGAA . . . . . . . . . . T
blockSeqs : . . . . TGAAATC TA AG T A AACT . A . TG . . . CC A . GCC . . TCTATAT . . . . C C T . . . . . T . C . . C . T . C . C . . . . . ATAT . A C . G . . TTAAA A . T . . . . GACTAATGCACTTGTACCTAG . . . T . TCAGCACA . . . . AT AT . GAC C T A . GT TGAA . . . . . . . . . . T
blockSeqs : G . A . . . . C . AC . . . CC T . TTC . . TACAAGG . . . . C T T . . . . . T . C . . A . T . A . . . . . . . . . A A . . . . TT . . T . . . . ATCAATGCACTTGTATCGTAG . . . T . CAGCACA . . . . TT AA . AAC C C A . CT TGAA . . . . . . . . . . T
blockSeqs : . A . TG . . . CA A . AAT . . TGAAAGA . . . . . C T . . . . . . . . . . . . A . T . . . . . . . . . ATAAATGCACTTAATCTAG . . . C . TCACACA . . . . GT AT . GAC T C A . C CAAG . . . . . . . . . . T
blockSeqs : A . TG . . . CC G . AC . . A . . . . . . . . . . . . . . . . AAAAATGACTATGTAC . . . . . TATATA . . . . A T . G T C A . T CAC . . . . . . . . . . .
blockSeqs : A . TG . . . TC A . . . . . . TCA . . . . . . . C . A . . T . . . . . . . . . . . .
blockSeqs : . TG . . . CC A . . . . . . . . . . . . . . . .
blockSeqs : . . . C A . . . . . . .
blockSeqs : . . . C .
blockSeqCons : AA** TNN** AAG AATAT*** A****** AATTAATGCACTTGTATCTAG************************ T*****
originalCons : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAAATTTTG---GTCTGGAAAATTATTT--TG----AA-ATNTTGCC-T-G-AAGATTTAAGGAT-TATATTNNCTAAATTT--CGAAC--CTGTA--ATCAT----CGCC---TT------C----C-TGTAGAGAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-NAAT----AA---------TGCA-C-T-TGTACCTAT-C-TA-GTTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATACN-T---TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
finalCons : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAA--TTTG---GTCTGGAAAATTATTT--TG----AA-ATNTTGCCTNN--AAGATTTAAGGAT-TATATTNNCTAAATTT--CGAAC--CTGTA--ATCAT----CGCC---TT------C----C-TGTAGAGAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAACAATAT---AG---TAATTTTA------AAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCTAATTAATGCACTTGTATCTAG------------------------TTAT-A-T---GCTTATT-TGTTC---------T---------CAGCAC------------A------T--ACT--TG-TA-TATAT---------GT-TAT--A-TG-A-C--CCTTA-----C--TTGT--A--------A-TGATACT-----TTATA---TGAATATTT-----T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCATTATATATACATGTATAAGAAAAACTAGTACGATATAGTACATGTATGACGATTATGACTATTGCTGATTTGCAGAAATACACTTTTCTTATATTGGATAAACCAGTGTTTTCTGATACAAAGAAAGCCATATTGTGCGCGACAAAATGTGATGAAATATGAAATTATGTCAGCCAGTCCCGTGAAAGATTGTGCACGTTTCAGTTACATATATCTGAATAAGGCTGTTCTCCTTAATTAACACAAAACTTCATTTTTGTGTACATATTTATATTTTACTTTGTTTATTTGTATGCCTATATACATGTACATTCCTGTGATTATGCATGTAATTTCTGTATACCGTACCTCATGCACCTCTGTCATTGTGGTTTGAACGAAAAAAAAGAAAAAAAAGAGCAAGAATTGAAAAAAC
Unaligned ( gi|12 ): TATGCGCTTTAAAAAAACAATTTTTACATCCTAGGTACTGTTCAAAGCCAAATATTATAAAATTTTCAGAATTAATGTCTTCTTCAAGTGTTAAAAAACTTAGAAACCTGTGCATGTTTACAACAAAAATATATGATCTAGTCTGACCTCCATAACCTAGGCATGAAGGCCTATACACCTCTTTTGCTTTCTTTTCCTGAAAATGACTATGTATATG
Unaligned ( gi|15 ): TGTGTATCTTTATTTCAAAAATATATGAAAATTATAGTCTGTTTTTCTTTTCTATTAATTGTAACATTTTATGTATATTCATGTATATATTTTATTTATTTCATTTGCATACCTACATATTATGACTCTTCTGACGTTATTTGTACTAATAAATGTAACTTTTGTATTG
Unaligned ( gi|20 ): TTATATATATATACATATGTATTACTTTTTCCATTTTTATATATCATTTGACTTCTTGTACCAATTATTGATGGTACGAGAGAATAAAGAAACTTGAA
Unaligned ( gi|21 ): TACCATATATTTTTTTTTGTTACAACACAGTGCTTTATCTGACATGAGAAAAGAATACCTACACAGCAAATATTGTACAAGTCCAAATA
Unaligned ( gi|25 ): TAGAAACTTGAAATTATGTACTCTTTGTAACAA
Alignments
lowQualScore : 1 11 2222 22222222222222 11 1111 1111111111111 11111111111111 11 1 111111 1111 111 1 2222222222 111 1111111 11111111 111 111111 2222222222 11111 33333333333333333 2222222 3333333333333333333333333333333333333333333333 111111111 11111111111111 11111111111 2222222 11111 11
lowQualScore : 1 1 0 1 2 1 5 7 1 11 8 11 9999 6 3 3 33333333333333 77 0 555 77 3 1111 66 1 55 11 44 6666 555 1111111111111 1 0 3 99999 4 4 22222222222222 4 777 0 00 4 0 6 2 222222 4 4 66 66 3 4 2 66 888 4444 5 2 0 66 9999 888 222 5 5 1 7777777777 5 99999999 000 0 6666666 99999999 000 1 666666 5 5555555555 77 22222 2 5 66 0 66 5 4 66 55555555555555555 0 4 4 4 0000000 4 4 4 777 4 3 4 0000000000000000000000000000000000000000000000 55 4 4 666666666 8 6666 4 99999999999999 55 88888888888 3 8888888 8888888888 0 999999 3 3 22222 555 3 55 88 22 3 88
lowQualScore : . . . . . . . . . .. . .. .... . . . .............. .. . ... .. . .... .. . .. .. .. .... ... ............. . . . ..... . . .............. . ... . .. . . . . ...... . . .. .. . . . .. ... .... . . . .. .... ... ... . . . .......... . ........ ... . ....... ........ ... . ...... . .......... .. ..... . . .. . .. . . .. ................. . . . . ....... . . . ... . . . .............................................. .. . . ......... . .... . .............. .. ........... . ....... .......... . ...... . . ..... ... . .. .. .. . ..
lowQualScore : 0 0 7 0 5 0 0 3 0 00 0 88 5555 7 7 7 00000000000000 11 4 999 00 9 1111 99 0 00 00 22 5555 444 8888888888888 1 8 3 88888 0 0 66666666666666 4 888 1 66 4 2 4 1 888888 4 4 11 11 6 4 5 99 888 0000 0 2 2 99 8888 888 555 0 0 4 1111111111 0 77777777 000 3 6666666 66666666 000 7 444444 7 0000000000 99 33333 9 7 66 8 99 0 4 11 44444444444444444 9 4 4 4 9999999 4 4 4 888 4 8 0 9999999999999999999999999999999999999999999999 55 0 0 000000000 0 2222 0 66666666666666 55 11111111111 6 7777777 3333333333 3 666666 3 3 99999 888 6 00 66 33 6 00
consensus : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAA--TTTG-GTCTGGAAAATTATTT--TG----AA-ATNTTGCCTNNAAGATTTAAGGAT-TATATTNNCTAAATTT--CGAAC--CTGTA--ATCAT----CGCC---TT------C----C-TGTAGAGAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-----A-AT-TAA----TGCA-C-T-TGTAT-----C-TA-GTTAT-A-T---G-CTTATT-TGTTC----------T---------CAGCAC------------AT------ACT--TG-TA-TA---------TATGT-TAT--A-TG-A-C--CC-----TTAC--TTGT--A--------A-TGATAC---T---TTAT---A---TGAATATTT------T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
Reference ( family-75 ) : ATTTCATAGCCTTAANTGGTTAAAGTNTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAAGAACGGAACAGCNCTGTCGANGATTCCGCGTANATATATTAATTACAG--AAT-TTTTAANACAA--TTTG-GTCTGGAAAATTATTT--TG----AA-ATNTTGCCTNNAAGATTTAAGGAT-TATATTNNCTAAATTT--CGAAC--CTGTA--ATCAT----CGCC---TT------C----C-TGTAGAGAC-TGGTAGATGG-AAC-AA-TA-T---TNN-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTTA-ACAAAAGGTTTTGTA--AAAA---NCCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT------AAAATC------ATT---GGCAAA------GT-TTG----------TT--AA----AAAAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-----A-AT-TAA----TGCA-C-T-TGTAT-----C-TA-GTTAT-A-T---G-CTTATT-TGTTC----------T---------CAGCAC------------AT------ACT--TG-TA-TA---------TATGT-TAT--A-TG-A-C--CC-----TTAC--TTGT--A--------A-TGATAC---T---TTAT---A---TGAATATTT------T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|1 : ATTTCATAGCCTTAAATGGTTAAAGTGTTGTGTTAAAGAAACGCTGAAAAACCAATTCGTACAGGAATGGAATAGTATTGTCAATGATTC-GTGTAAATATATTAATTATAG--AAT-TTTCAAAACAAATTTTG-GTATAGAAAATTATTTATTG----AA---TTTGCCTA-AAGATTTAAGGAT-TACATTAGCTAAATTG--AGAAC--CTGTA--ATCAT----TGTT---TT------C----C-TATAGAAAC-TGGTAGATGG-AAT-AA-TA-T---TGA-A-AG-A-AATTTAAGGATA-TGTACAATGTGTAA---TAA--CAA-CAGCATCGGTGATGAATTTCATTATATT------AT-GG-A--ATGC--GATTT-TTTTTTTCAA--ACGACAGAAAAAT---ACA--TTTCA-AAAAAAGATTTTGTA--AAAA---TCCCAAC---ATGATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---TAATTTT-------AAATC------ATT---GGCAAA------GT-TTG----------TT--AA----GATAATATT-TAA-TGCTGTCT--G-CTC-TT--CCT-----A-AA-TAA----TGCA-C-G-TGTACCTATAC-TA-GTTAT-A-T---G-CTTATT-TGTTC----------T---------CAGCAC------------AT------ACT--TG-TA-TA---------TATGT-TAT--A-TT-A-C--CC-----TTAC--TTGT--A--------A-TGATACT--T---TTAT---A---TGGATATTT------T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTGAATAA
gi|10 : TA--ATCAC----CACC---TT------C----C-TGTTGAAGT-AGGCAGATGG-AAA-AA-CA-C---TTT-A-AG-A-AATGAACGCTTA-TGTACATTATGCAACTGTAA--C---CAA-ATTGGTGATGAATTTCATTTTATT------CT-TG-A--ATGTAAGACTT-T
gi|11 : aaactac-TT--CCT-----G-AC-TAA----TGCA-C-T-TGTAC-----C-TA-GTTGT-A-T---G-CTTATT-TGTTC----------T---------CAGCAC------------AT------ACT--TG-TG-TA---------TATGT-TAT--A-TG-A-C--CC-----TTAC--TTGT--A--------A-TGATAC------------------------TTT------T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--T-GG-TTTTGAGTAAATAAgtgtaaattgcgtagagatttttttggtatagaatattgttctgctccaaacaccaaaacattttgtgaaattatgtcttccaaacaccctgtacaagttgaaagaaagttgtgtctttttattacgaaaatcaacaatattgtctgcttgacccctgtactttgtaattatt
gi|13 : gaaataataatgtttccaataataattttgatacagaataataaaacatgaccaaatatgattaactacatgtataatagttataaccgttgcatcaggtctaaagatcatatactccttgtgacagaatatcgagTAT---T---CTATGACA---TGAA-ATTT------C-TGTATAA---TGTTCCC---CAT-GTGCCAA--TGTCATTG-T-GG-TTT-GAGTAAATAAatgaattgaatcgagc
gi|14 : aatgaatctgttctccttcacaaaaattcatttatcaaaatatattacattttactacaatattgtgtgtttgaatgcctacgtgcattcctttgctgttactTGTTAAGGAAGCACTGAAGAACCAGTTTGTTCAAGAACGGCACAGCTCTGTAGAAAATTCCACG-ACATGTATTAATTACAG--GAT-TTTTAAGAC--------------GACGATTA-TT--TG----AATAAATTACCT-AAAG--TTGA-----TAT--------AATTT--CGAAC--AACAA--ATCATATACTACC---TT------TGATAT-TGTA---AC-AGGCAGATGG-AAC-AA-TA-T---Taaatcaaagaatgagtaaaatcatcgataaagac
gi|16 : tTTACAG--AAT-TTTTAAAAC----TTTG-GTTTGGAAACTTATTT--TG----AA-AGCTTATCTGTGAAACTC-AGAAG-TATATTTTAGAAATTT--CGCACTACTATA--ACCAC----CGCC---TG------C----C-AGTGGAGAC-TGGT
gi|17 : atGAATTTCATTATATC------AT-GG-A--ATGT--GA-TT-TTTTTTTCAA--ACGACGGAAAAAT---ACATTTTTTA-ATAAAAGGTTTTGT---AAAA---TCCCAAC---ATTATC--AAGTTTA-AT-GAAcg
gi|18 : ATT-TGTTC----------T---------CAGCAC------------AT------ACT--TG-TA-TATATACATTGTATGT-TAT--A-TG-A-C--CTTTATATTAC--TTGT--A--------A-TGATACG--T---TTAT---A---TGAATATTT------T-TGT-T-----TGTACCT---CA
gi|19 : TA--ATCAT----TGAT---TT------C------TATAGAAAC-TGATATATGA-AAT-GA-TA-T---TCA-A-GG-A-AGCTTAAGGACA-TCTA-AATGTGTGA---TTG--CAA-TAGTATATGAGATGAATT
gi|2 : a--TTTG-GGCTTGAAAAATATTT--AG----AA-GTATTGCCTTAAAAATTTA--GATCTATTTTTCTCAAATTT--CGTAC--CACAA--ATCAC----CACC---TT------C----C-AGTAGAGGC-TGGTAGATGG-GCC-AA-TA-T---TCT-A-TA-T-AATGAAAGGTTT-TGTGTCTTGTGTAA---TGAATTAA-AAG--TTGCGGATGAATTCCATTATA-T------AT-GACA--ATAC--AG--T-GCTTTGTCAAATATGAGAAAAGAAT---AC-----CTACACAGCAGGTACTACA--CAAG---ACCAAAT---GCTGTA--AAATTTC-AT-GAAAT-TATG----------T-CAACC--------AG---TGAGGTT------AAAA-C------ACT---AAAAAAAACTTTGT-ATG----------TT--CATTTCCAAAATCTA-TGA-----GTAT--G--TC-CT--CCTTAACAA-AT-TAAAACCTACATT-T-TGTAT-----T-TA-TTTAT-A-T---ATCCTCCC-CCCCCCCCCCCCATAT---------CACTAC------------ATGGTTTTATT--CG-TG-TG---------TGTAT-T-T--A-T--A-CTTCT-----TTCT--TTGTCAA--------A-TG-TAC---G---TT-------------TATTT------T-TAT-TCAATGTATACCT---CAT-GTACCAC--AGA-ATG--T-GG--TTTAAGCGAATAA
gi|22 : tgtttaattcatccaaatGT--A--------A-TGATAC---TAT-TTAT---A---TGAATATTT------TTTGT-T-----TGTACCT---TAT-GTACCAG--TG--ATC--T--G-TTTTGAGTGAATAAatgaactt
gi|23 : ATTTCATAGTCTTAACTGGTTAAAGTCTTGTGTTAAAGAAAAGCTGAAAAACCAATTCGTACAAGAATGGAAatgaattgaa
gi|24 : AAGTTT--CGTAC--CACTA--ACCAT----CGCC---TG------C----A-CGTTGAGAC-TGGTAAAAGG-
gi|26 : gGAAC--CTGTA--ATCAT----CGTT---TT------C----C-TATAGAtttggtat
gi|3 : aAATCACAGGTAATGTTTTAAT-TAA--TGCATGTCTGAAAACTTATCT--TG----AA-ATCTTACCTGTGAAACTCA-GGAG-CATATTTTTGAAATTT--GGCAC--TACTA--ACCAC----TGCC---TG------T----C-GGTGGAGAC-TGGTCGATGG-TTC-AG-TA-TACATAC-A-TGTATAATGAAAGATTG-TGTGTGTTGTGTAA---TGA--TAA-CAAAATAGCAGATGAATGTCATTTTTTTTTTTTGTT-AG-A--ATGC--AGTGC-TTTGTCTACA--ATAAGAAAAGAAT---AC---CTTCA-ACAAAA-ATATTGTA--CTAG---ACCAAAT---ACTGT-----GTTTA-AT-GAAAT-TATG----------T-----C--GAC-T-AG---TAATATT------AAAA-A------ACT---AAGAAA------CT-GTGGATCTTTATTTT--AA----AAAAATATG-AAA-AA--GTAT--G-TTC-TC--CTT-----A-ATACAAAAT-TATT-T-T-TCTAT-----TGTACGTTTT-A-T---G-TATATTCTATT-----------T---------CA-----------------------------TG-TA-TA---------TA----TAC--A-TGTA-G--TT-----TTGT--TTGC---------------ATAC-------CTAC---A---TACACTCTTCGGACGT-TAT-T-----TGTACTTATAAAT-GTACCAATTTG--ATTG-T-GG--TTTGAGAGAATAA
gi|4 : aTGTATATATTAATTATAA--AAA-TTTTAACACAAATTTTG-GTTTAAAAAAT-ATTT-------------GTTG--------ATTTAAGGAT-CACGTTAACTAAATATAGCGATT--TTGTATAATGAT----CGCC---TTGAAATTC----C-TGTAGAGGC-TGGTAGATGG-A-C-AA-CA-T---TAC-A-AG-G-AATTTGGGGACA-TGCACAAAGTGTGA---TTG--CA----GTAT--------AGTTTCATTATTTC------AC-GG-AGTATAC---ATTT-TTTTTTT-AA--ATCACAGAAAAAT---ATA---TCTA-ACGAAAGATTTTGGA--AAGG---CCTCA-----ATTAC-----GTTTG-AG-AAGTT-AATGA-ATACAAACTACAAAC--AATGT-AA---TATTTTT------AAAATC------ATT---TGT-GA------GT-TTT----------TT--NN----NNNNNNNNN-NNN-NNNNNNNN--N-NNN-NN--NNN-----N-NN-NNNNT--TGTT-T-T-TGT-T-----T-T---TTGC-GCT---G-CTTGTT-TTTCC----------TGAGCTTCTACGGCACTTACACCTAACAAT------ACT--TT-TA-TT---------CATTT-T-TCAA-TG-------C-----ATAC--TTGT--ACATATTTTG-TGACCC---TTACTTAC---AACCTGTATATAT------T-TGT-T-----TGACCCT---CAT-GTACCAA--TA--ATC--T-AG-TTTattgaactgaat
gi|5 : aGAAC--CTGAA--ATCAT----CACTGTTTT------C----CATATAGGAACCTGGTCGATGGTAATTAA-TA-T---TGACATAG-AGAATTTAAGGATAATGTTCAATGTGTAA---TAAA-CAA-CAGAATCGGTGATGAATTTCATAATATT------AT-GG-A--A-GT--GATTT-TGTTTTCAAA--ACGACAGCAAAACATAACA--TTTTA-ATAAAAGGTTTT-TA--GAAAATCTCCCAACAGTATTATC--AAGCTTACATCGAACTAAATGACA-------TACAAACAAAATATCAGGGTTAATTTTTTCTAAGAAATTTTTCAAATTGGGGGCAAA------GT-TTG----------TTTAAA----GAAAATATTCTAATTGCTGTCT--GTCTC-TT--CCT-------AT-CAA----TGCA-C-T-TGTAT-----CGTA-GTTAT-A-TTGAG-CTTA-T-TGTTC--------------------CAGCAC------------AT-------CT--TGTTA-TA---------TATA-------A-TG-ACC--CC-----TTAC--TTGT-----------A-TGATAC---C---TTAT---A---TGAATATTT------T-TGT-T-----TGTA-CT---CATCGTACCAG--TG--ACC--C-GGTTTTTGAGTGAATAAaa
gi|6 : ATTATTT--TTTCCCAA-ATGTAGCCGTGAAGATTTAAGGAT-TATATTAACTAAATTG--AGAAC--GTGCA--ATCAT----CGTT---TT------C----C-TAT-----------AGA---------------------------A-AATTTAAGAATA-TGTACAATGGGCAA---GAA--CAA-CAGCATTGGTGATGAATTTCATTTCATT------AT-GG-A--ATGT--GATGGGTTTTTTTCAA--AGGACAGCAAAAT---ACG--TCTTA-ATAAAAGGTTTTATA--AAAA---ACCCAAC---ATTATC--AAGTTTA-AT-GAACT-AATGA-A-------TACAAAC--AATAT-AG---CAATCTT------AAAATC------GTT---GGCAAA------GTGTTG----------TT--AG----AAACAT-TT-TAA-TGCTGTCT--G-CTCTTT--TCT-----GTAC-TAAG---TGTA-CAT-TGTAT-----C-TA-GTTAT-A-T---G-CTTA-T-TGTTC----------T---------CA-CAC------------ATAC----ACT--CG-TA-TA----------ATGTCTAT--A-TA-A-C--CT-----TTAC--TTGT--A--------ATTGAGAC---T---TTAT---A------------------------------TGTACCT---CAT-GTACCAG--TG--ATT--T-GA-TTTTGAGTGATTAAatgaattgatgag
gi|7 : C--CTGTA--ATCAT----CGTT---TT------C------TATAGAAAC-TGGTAGATGG-AAT-AAATAAT---TGA-A-AG-A-AATTTAAGGATA-TGTACAATGT-TA----TAA--CAAACAGCATCGGTGATGA-TTTCATTATATT------ATTGG-A--ATGT--GATTT-TTTTTTCCAA---CGACAGAAAAAT---ACA--TTTTA-AATAAAGGTTTGGTAGAAAAA---TCCCAAC---ATTATCGAAAGTTTA-AT-GA-CTGAATGA-A-------TACAAAC--A-TAT-AG---TAATTCT------AAAATT------ATT---G-CAAA------GT-TTG----------TT--AA----AAAAGTATT-TAA-TGCTATCT--G-CT--TT--CCT-----A--T-AAA----TGCA-C-T-TA-AT-----C-TA-GTTATGA-T---G-CTTATT-TGTTC----------T---------CAGCAC------------AT------ACTGTTG-TAATA---------TATGT-TAA--AGTG-A-C--C------TTAA--TTGT--A--------A-TGATAC---T---TTAT---A---TGAATATTT------T-TGT-T-----TGTACCT---CAT-GTACCAG--TG--ATC--CGGG-TTTTGAGTGAATa
gi|9 : -TGCTGTCTTTA-CTC-TTTACCT-----A-AA--AA----TG-A-C-TATGTAC----------------A-T---G-TTT-CT-TGTTT----------T-----------ATAT------------AT------ACA--AA-TA-TA---------CATGTGTAT--T-T----C--TT-----TTTCCATTGT--A--------A-T-ATACATGTA--TTAT---A---CAAGTAT---------------------G-ACCT---CAT-GTACCAA--TT--ATTGAT-GG--TGTGAGTGAATAAcaaatga
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCATTATATATACATGTATAAGAAAAACTAGTACGATATAGTACATGTATGACGATTATGACTATTGCTGATTTGCAGAAATACACTTTTCTTATATTGGATAAACCAGTGTTTTCTGATACAAAGAAAGCCATATTGTGCGCGACAAAATGTGATGAAATATGAAATTATGTCAGCCAGTCCCGTGAAAGATTGTGCACGTTTCAGTTACATATATCTGAATAAGGCTGTTCTCCTTAATTAACACAAAACTTCATTTTTGTGTACATATTTATATTTTACTTTGTTTATTTGTATGCCTATATACATGTACATTCCTGTGATTATGCATGTAATTTCTGTATACCGTACCTCATGCACCTCTGTCATTGTGGTTTGAACGAAAAAAAAGAAAAAAAAGAGCAAGAATTGAAAAAAC
Unaligned ( gi|12 ): TATGCGCTTTAAAAAAACAATTTTTACATCCTAGGTACTGTTCAAAGCCAAATATTATAAAATTTTCAGAATTAATGTCTTCTTCAAGTGTTAAAAAACTTAGAAACCTGTGCATGTTTACAACAAAAATATATGATCTAGTCTGACCTCCATAACCTAGGCATGAAGGCCTATACACCTCTTTTGCTTTCTTTTCCTGAAAATGACTATGTATATG
Unaligned ( gi|15 ): TGTGTATCTTTATTTCAAAAATATATGAAAATTATAGTCTGTTTTTCTTTTCTATTAATTGTAACATTTTATGTATATTCATGTATATATTTTATTTATTTCATTTGCATACCTACATATTATGACTCTTCTGACGTTATTTGTACTAATAAATGTAACTTTTGTATTG
Unaligned ( gi|20 ): TTATATATATATACATATGTATTACTTTTTCCATTTTTATATATCATTTGACTTCTTGTACCAATTATTGATGGTACGAGAGAATAAAGAAACTTGAA
Unaligned ( gi|21 ): TACCATATATTTTTTTTTGTTACAACACAGTGCTTTATCTGACATGAGAAAAGAATACCTACACAGCAAATATTGTACAAGTCCAAATA
Unaligned ( gi|25 ): TAGAAACTTGAAATTATGTACTCTTTGTAACAA