lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 5555555555555555 111 22222222222 11111 3333333333333 1111 22222 22222 1111 44444444444444 22222222222 22222222222222222222 111111 22222222 22222222 4 2222222222222222222222 111 22222222 66666666666 1 222 1 111111 2222 111 22 11 5555555555555555555555555555555555 11 22222222222222 111111111111 22222222222222222 3333333 111111 22222222222222 11 2222222 111111111111 1 11111 555555555555555555555555555 1 1 2222222 5555555555555555555 111 44444444444444444 1 11 333333333333 2222222222222222 111 777777777 11111 11 11 222222222222222222222 1 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 222 111 333 222 111 2 1 2
lowQualScore : 6 4444 7 9 5555555555555555 6 111 6 00000000000 2 88888 6 6 6 6666666666666 5 5 2222 33333 44444 6 6 4444 3 99999 99999999999999 6 77777777777 1 44444444444444444444 6 5 222222 5 00000000 5 5 5 1 55555555 0 5 6 99 8888888888888888888888 555 1 33333333 3 2 0 11111111111 6 0 333 0 333333 66 6 8888 11 000 5 55 66 5 22 8888888888888888888888888888888888 1 00 1 2 0 3 00000000000000 777 55 4 777777777777 2 55 8888888 1 777 0 11111111111111111 4 4 4 4 8888888 4 4 555555 66666666666666 55 6666666 4 888888888888 0 44444 777777777777777777777777777 0 66 0 1 0 55 4444444 4 4444444444444444444 4 666 1 2 22222222222222222 4 9 11 4 66 0 3 222222222222 6666666666666666 111 6 3 1 3 222222222 11111 99 33 6 999999 6 11 55 888888888888888888888 0 0 0 7 8 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 7 3 7 0 7 555 555 555 111 000 0 2 5 3
lowQualScore : . .... . . ................ . ... . ........... . ..... . . . ............. . . .... ..... ..... . . .... . ..... .............. . ........... . .................... . . ...... . ........ . . . . ........ . . . .. ...................... ... . ........ . . . ........... . . ... . ...... .. . .... .. ... . .. .. . .. .................................. . .. . . . . .............. ... .. . ............ . .. ....... . ... . ................. . . . . ....... . . ...... .............. .. ....... . ............ . ..... ........................... . .. . . . .. ....... . ................... . ... . . ................. . . .. . .. . . ............ ................ ... . . . . ......... ..... .. .. . ...... . .. .. ..................... . . . . . . .................................................................................................... . . . . . . ... ... ... ... ... . . . .
lowQualScore : 7 2222 3 8 5555555555555555 7 777 7 00000000000 5 55555 7 7 7 0000000000000 7 7 1111 99999 33333 7 7 2222 3 33333 88888888888888 7 77777777777 0 77777777777777777777 7 7 666666 7 77777777 7 7 7 7 66666666 0 9 7 22 8888888888888888888888 222 4 88888888 0 5 2 22222222222 5 0 000 0 888888 44 7 3333 66 000 7 55 99 1 66 2222222222222222222222222222222222 4 77 2 6 2 6 22222222222222 000 55 0 888888888888 1 00 8888888 6 000 7 44444444444444444 7 0 0 0 3333333 4 4 888888 88888888888888 77 6666666 0 888888888888 1 99999 111111111111111111111111111 5 99 0 6 2 99 9999999 4 9999999999999999999 4 222 4 4 22222222222222222 4 4 88 4 11 1 7 777777777777 0000000000000000 777 7 5 0 2 555555555 22222 22 33 7 333333 7 00 22 555555555555555555555 2 0 0 7 3 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3 3 3 7 3 777 555 000 555 555 0 5 0 0
consensus : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TATTTT--CCC-TA-----T-T-T----TCCA--C--ATTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATT---------TATAGTTGT---A-ANATACAT-------ACATAGT-AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-ATTTCAC-CANG--ATTT--AATTGCAACAAAC-T-C--T-CNACNTTGTATTTGAACTT-AAAGAAAGATAATGTAATAAT-C-C-GTA-ATATTAGG-AGTT-TTTGTTTTGTTTCG-AAC--A-AATTAA---AA-ATGTTATTGTTTGG--TATATAGAATTATAAAGTTT-ATAACT------TT-GTT------AC-----A-C-AAACTGAGAGGNCTTTCACCCAANATAAC-A--TT-TGNA-AC--ATT---AAAACCAATTC--T-T-TNT--GA----TGTTTTT--CTGTA-NA----TATGC---ATG----C-T-AA-AG-TG-TTCCANA-GTG-T-T---ATA-AT-T-TCA-----NAACA---ATT--T-A---AAA-CATATAGTT-N-ATTGTCTCAACATTCTT--T-T-ACANAAT---GNACAACAGT-CA----TC-TG-A---A--TGA-A-TTATT--T-TTTTTTAAGA-TAATATTTNGCCGGCAGA-AAT--T-TATG--T--A----AAA-TTCTANATTGTAGCCATTGAACT-TGG-GTAT-CAGTTAGTTG-TTTTGAAA-ACAA-ACTTTAA--ATAACTCNTTG-----GCAN-NAACA----TT-TCTTC----CCA---GAT-GTACAGATAATTCNG-T---GTTCCAATTT-TGGA--TAGCTTTTGGAA-TT-G-G-ATTATTG--TTTNTTTATC----ATATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATNCAACAGAACGGGTTCAAAGTAAAAAGG--ATA-A-TGGTGTA-ATA--TTTT-TTNAATATNAGT--TC--TCGACAGACA----TA-TTC---TTAGGA-ANA-TT--TG--ATTGNAA-A-CACTAATAACGCTATTAT-ATTGCATTATACAT--ACACTCGNAAGTTATCTAAATTCTTGTNNNAAACACNTTGTAACAATAAA
Reference ( gi|1 ) : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TATTTT--CCC-T------T-T-T----TCCA--A--ATTCGGC--ACA-GTAT-CTC----ACACCCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATT---------TATAATTGT---A-ATATATAT-------ATATAGT-AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAA-ATTTATCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-ATTTTAC-CAAG--ATTT--AATTGCAACAAAC-T-C--T-CAACCTTGTATTTGAAG---AAAGAAAGATAATGTAATAAT-C-A-GTA-ATATTAGG-AGTT-TTTGTTTTGTTTTG-AAC--G-AATTAA---AA-ATGTTATTGTTTGG--TATACAGAATTATAAAATTG-ATAACT------TT-ATT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAATATAAC-A--TT-TGTA-AT--ATT---AAAACCAATTC--T-T-CGT--GA----TGTCTTT--CTGTA-AA----TATGC---ATG----C-T-AA-AG-TG-TTCCAAA-GTG-T-T--GATA-AT-T-TCA-----GAACA---ATT--T-A---AAA-CATATAGTT-G-ATTGTTTCGAC-TTCTT--T-T-ACATAAT---GAACAACAGT-TA----TC-TG-A---A--TGA-A-TTATT--T-TTTCTTAAGA-TAATATTTTGTTGGCAGA-AAT--T-TAT---T--A----GAA-TTCGATATTGTAGCCATTGGACT-TGG-GTATCCAGTTGGTTG-TTTTAAAA-ACAA-ACTTTAA--ATAACTCATTG-----GCAG-TAACA----TT-TCTTC----CCA---GAT-GTACAGATAATC----T---GTTCCAATTT-TGGA--TAGCTTTTGGAA-TT-G-G-ATTATTG--TTTATTTATC----ATATCA-TATAAC-ACTTTGGAAC-AT-TTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGGAAATA-ATTGGTGTATACA--TTTT-TTCCATATCAGT--TC--TTGACAGACA----TA-TTC---TTAAGA-AAATTT--TG--ATTCTAGTA-TACTAATAATACTATTAT-ATTGCATTGTACAT--ACACTGGCAAG---TCTAAATTTTTGTGTAAAA-ATCTTGTAGCAATAAA
gi|20 : TTTTTTTTTTTTTTTTTTTTTTAATTAATATCTTATTTCTTTTTCT----------------AT-ATTCAT---CAATT-A--TAGTA--GCAAA---A-CATA-TATT-AA-TATTTT--CCCATA-----T-T-T----GCCA--AATATTCG-----CA-G--T-TTC----A-ACCCTCTC-
gi|14 : TTTTTTCACTTTTTTTTTTT-ATTA----TTTA-TTCTTTTTCTCAT-------------AT-A---GC---CAA-T--------------AA--CA-TACAGTATT-AATTATTTT--TTT-TTTTCTAT-T-T----TCC---C--ATTCCGCTAACA-GTATCCTC----ACACTTTTTT-GCTATT-CTTTCATCCTGC-GCATA-ATCAGCAGTTTATATAAATATCCAA-ATA-ATAA-------AGGTAAA-AC--AATTT-TTACTCCCTTTTCTAAA-TT-ATTCTAAAATGATG-T----TCAGTCAAAAATATTTATCCAA
gi|17 : cacaTTTTTGTTTTGTTTT-ATTA----TTTATT-CTTTTTCTCATGATTGGTACGTATATGATTTAT---ATT-T-A--TA-TA--GCAAAA-CACTACA-TATT-AA-TATTTT--TCT-TA-----T-T-T----TCCA--C--ATTC-GC--ACA-GTAT-CTC----ACACTCTTTC-A----T-C------C---T-GCATA-A-T---------TATAGTTGT---A-ATACAT
gi|22 : ctgtaTTTTTTTTTTTTA-ATTA----TTTA-TTCTTTTTCTC---------------AT-ATTCATGTACAA-TAA--TA-TA--GCAAA--CATTACA-TCTTAAA-TATTTTTCCCC-TA-----T-T-T----TCCA--C--ATTC-GC--AC
gi|12 : TTTTTT-ATTG----CTTATT-CTT---------------------AT-ATTCAT---CAA-T-AAATA-TATTG-AAA--CA-TACA-TATC-AG-TCTCTT--TTC-T------TGT-TGAACTTCA--C--ATTCG-C--ACC-GTAT-CTCTTGAACGCTCTTTC-AC-ACTACATTCATC---C--TATATAGT---------TATAGTTGT---ATACATATAT-------ACAAAGT-AC--T---T-GTACTTC--------AAATT-ATTCT-AA-TAATGTT----T-AGTCAAAAATATTTTTCCAATTTGCCCTAAAGTTTGTTTCGAATT---AATATTCCACGTATG--ATTT---ATTGCGACAAA
gi|2 : TTTTT-ATCA----TTTATTCTTTTTCCTCA---------------T-ATTCAT---CAA-T-A--TA-TATAGCAAAAACA-TACA-TATT-AA-TATTTC--CAT-A------T-T-T----TCCA--C--ATTCG-C--ACATATAT-CTC----ACACTCCTTC-AC-CCT--------------GCATA-ATT----------ATAGTTGT----------TA--------ATATAGT-AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATG-T----TCAGTCAAAAATATTTATCCAATTTGCCC-AAAGTTTA--TCAAATTTGAAA-ATTTCAC-AAAG--ATTT--AATTGCAACAAACTT-C--T-CCACCTTGTATTTGA-----AAGAAAAGATAATGTAATAATCC-A-GTA-ATATTAGG-AG-T-TTTGTTTTGTTTTG-AAC--ACAATTAA---AA-ATG-TATTGTTTGG--TATACAGAATTATAAACTTGAATACAT------TT-ATT------AC-----A---AAACTGAGAGGCCTTTCACCCAATATAAC-ATGTC-TGTA-AT--ATT---AAAACCATTTC--T-TCCGTTGGT----TGCTCTT--CTGTA-AA----TATGC---ATG----C-T-AAGAG-TG-TTCCAAA-GTG-T-T---ATA-AT-T-TCA-----AGAAA---ATT--TAA---AAA-CATAT-GTTGG-ATTGTTTCAAC-TTC-T--T-T-ACATAAT---GAACAACAGT-TA----TC-TGAA---A--TGA----CATT--TATTTTTTAAGA-TAATA-TTTGTTGGCAAATAAT--T-AAT---TTAA----GAA-TTCGATATTGTAGCCATTGGACT-TGG-GTAT-CAG-TGGTTG-TTTT-AAA-ACAA-ACTTTAAACATAACTCATTG-----GCAGAAAACA----TT-TCTTT----CCA---GATAGTACAG--AATTTCTGT---GTTCCAATTTCTGGA--TAGCTTTTGGAA-TT-GAG-ATT-TTG--TTATTTTATC----ATAATATTATAA--ACTTTGGAAC-ACATTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGG-AATA-AATGGTGTATATACTTTTT-TTCCATATCAGTTCTC--TTGACAGACA----TA-TTC---TTAAAG-AA--TT--AG--A-TATAG---TACTAATAATACTATTAT-ATTGCATTGTAC-T--ACACTTGCAAG---TCTAAATTTTTGTGAAAAACATCTTGTA-TAATAAA
gi|13 : TTCT--TCC-T------T-CAT----TCCACAA--ATTTCGC--ACA-GTAT-CTC----ACACTCTTCCAAC-ACT-T-TTCATC---CTGCATA-AAT---------TATAGTTG----A-AAATACAT-------ACATAGTAACAAA---T-GTACTTC--------AA-TT-ATTCT---ATGATG-T----TCAGTa
gi|6 : tttttttttttttttttttttttttttttttttttttttctctatttcatcaaataaatataacaaaacaataactattaatgttttttttttttttttgtttttttttttctatttttcA-ATT---------TATAATTTT---A-AAA-ACAGCAAAAGAAAATAAT-AA--A---TAGTA-TTC------------T-ATT-T-AGTTGATATACGAATCAGTCAAAAATATTTTTCAACCTCATCC-AGGCTTTA--TCAAAATTGTGC-ATTTTAT----GTCATTG--AATTGCAGCATAT-TTC--T-CCACAAGATATTTCAACTTCAAA------TGACATAATAAT-C-CTATA-AGGTTAGG---TTCTTTACTCTGCATCA-AAC--A-AATTTT---TG-ATGT-ATTGTTTAA--CATATAAAATTATAAAGTTT-ATAGCT------TT-GTT------ATCA---A-T-AGAC--AGTGGGATTTCACCTAATATAAT-A--TT-TGAC-AC--ATTTAAAAAACCAACTC--T-T-TCT--GA----AGTTTTT--CTGT---A----TAT-C---ATT----C-C-AC-AA-TG-TTT-----GGG-T-T--------T-TATCA-----CATGA---AGT--A-A---AGA-CATGTA--T-C-ATTGTCTCAACATTATT--TGT-ACAAAAT---CTACAACAGT-C----------------------A-TTAGT--T-----TTAACATTAATAT----CCAACAGG-AATGAT-TCTGTGT--A----AAA-TTCTAAAGTGCAACCATTGAACA-GAA-GAAT-CAG-TAGTTG-TTTT-GAA-ACAA-ATTTTAA--ATAgc
gi|19 : cacttccttctcgcagtggttacttgctacttgctgtgcagc-ATATACAT-------ACATAGT-AC--A---T-GTACTTC--------AA-TTTATTCT-AAATGATGTT----C---TCAAAAATATTTTTCCAATTTGCCC-AAAATTTG--TCAAA---G-AA-AATTTCA-CATG--ATTT--
gi|5 : taattatagttgtaatacatacatacatTACAT-------ACATAGT-AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTC----T-AGTCAAAAATATTTATCCAATTTGCCC-GAAGTTTG--TCAAATTTG-AA-ATTTCAC--AAG--ATTT--TATTGCAACAAAC-T-TCTT-CAACCTTGTATTTAAA------AGAAAGATAATGTAATAAT-CCA-GTA-ATATTAGG-AGTT-TT-GTTTTGTTTTG-AAC----AATTAA---AA--TGT-ATTGTTTGG--TATAAAGAATTATAAAATTG-ATAACT----------------------------------GAGAGGCCTTTCACCCAATATAACCA--TT-TGTA-AT--ATT---AAT-CCAGTTC--T-T-CGT--GA----TGTCTTT--CTGTA-AA----TAGGC---ATG----C-T-AAGAG-TG-TTCCAAAAGTG-T-T---ATA-AT-T-TCA-----GAACA---ATT--T-A---AAAACATAT-GTT-G-GATGTTTCAAC-TTCTT--T---ACATAAT---GA-CA-CAGT-TA----TC-TG-A---AA-TGA----CATT--TATTTTTTAAGA-TAATATTTTGTTGGCAGA-AA---------------------A-TTC--TATTA-GGCCATTGGACT-TGG-GTATC-AGT-GGTTA-TTTTAAAAAACAA-ACTTTAA--ATAACTCATTG-----GCAG-AAACA----TT-TCTTT----CCA---GAT-GTACAGATAATTCTG-T---GTTCCAATTT-TGGATGTAGCTTTTGGAA-TG-A-A-ATTATTGCATTTACT
gi|3 : TCAAAAATGTTTTTCCACAATGACC-ATAATTTT--TCAAACCTATAA-AT------CACA--ATTTTGAATAGCAATATGC-T-T--TTCAATGTTAAATTTGAATTT-CAAGTGAGATAAT-----AAC-C-C-ATATATATTTGGTAGTT-T--GTTCTGTTTCA-GACTAG-AA--AA---AA-ATAT-ATTGTTTTG--TGTATAGGATCAAAAAATTT-AGCACT------TT-GTT------TCTTCCTG-T-GAG-TGGGAGA----TCACCAAATAACAC-AA-TT-GGCA-A---GTT---AAATCCAACTC--TCT-CTT--------TGGTTTT---TGCA-TA----TATAT---ATGTAAAC-T-AA-AACTA-CTCCATA-ATG-A-C---ATA-AT-T-TTT-----TCACA---ATCGAT-A---AAA--ATAT-GTT-GTATAGTTTCGAC-ATCTTGTT-T-ACAAAAG---GTACAGGA----A----TC-AG-A---ACTTAC-A-AGATTGAT-TTTCTTTAAA-TAGTAATTAACAGGAAGA-ATT--C-TAA---T--ATGAAAAA-TTCTGTATTGTAGCCACTGAGCTGTAGAGT---CAGT-AGTTA-TTTTGAAA--TAA-ACTTTAA--ATACATCTTT-------CAC-CAACAATTATTGTATTC----TCT---GAG-G---AGATAAT-----TAGAGTTCCA--CC-TGGA--AA----TTG-AA-TTAG-G-ATCA--G--TATAACTTTC----AT-TCA-TATGAC---TTTTGTAC-AT-TTTTCATATTATAGAATTGGTTCATAGTAAAA-----------TGGTATAGA-A--GGTT-TTAAATACTAGT--TG--TTGAC--GCAATTCTA-TTTAAATTAGGACACAGTTCATA--ATTGAAATAGCACTTATAACGCT-TGATGGTTGC-TAATACATACACACTCAAAAGTTATCTA---TCTTGTTTTAAA-ACATT-TAACAAgta
gi|10 : aTTGTATTGTTTTACAAC-----ATTGATTTAT-ATGA-ATTGTTTGG--TATATAAAGTTTTGAAATTT-ATTACT------TT-GTTTG----AT-----T-C-TAAT--AATGGACAATCACCAAAAATAAT-A---T-TAAA-ATACATT---GAAACGAATTCAGT-T-TGT--------TGTTTTC--TTGTA-TA----TATGC---ATgacaaaaa
gi|11 : tggtaggTTTG-AAA--C-AACTAA---AATATACTGTT-TTTGA---ATATAGTATTACAAAGTTT-ATAACTAAAACTTTGAT-------------------AACTGAATGGTACTTCTCCAAAAATTAC-A--TT-TTTG-GC--ATT---AAAACCTATAC--G-T-TTA--GA----TGTAGTA--TTATA-TA----TATGT---AGA----CTT-AG-AT-TATTTCCAAA-ATA-C-T--TGTACATAT-TCACACATGAAAA---ATG--T-ATGCAAA----ATAGTT-aatgcatacttggctgttatcataaagttaacctactactttgtcatagtacacagaaataatttgtacagtattttcagagttgtgtccactaaaagaacagatatcattatccacaagtttatttctttttcaaagtaacttttaacagggagaattc
gi|4 : gaatttttaaacagctatatatttttcaacattataattcatttttaaaaaatttatcaatccaattaggtttggcatttttccacaAC--A-AAT-AA---AG-ATGT-ATTGTTTAACATATATAAAATTATAAAGTTT-ATAGCT------TT-GTTT-----AT-----AAT-AGAC--AGTGGAATTTCACCTAATATAAT-A--TT--GAC-AC--ATT---AAAACCAACTC--T-T-TCT--GA----CGATTTT--CTGTA-TA----TATGG---AGA----C-TCAA-AT-CA-TTCCACA-ATGTT-T--G--G-GT-T-TTA-----AAACATG-AAG--T-A---AAG--ACATGGAT-C-ATTGTCTCAAC-ATTAT--G-T-ACAAAAT---CTACAACAGT-CATTAGTT-TT-A---A--C---A-TTAAT--T-TTTTTCAAG--TAATAT----CCAACAGG-AATGAT-TCTGTGT--A----AAA-TCTAA-ACTGTAACCATTGAAC--AGA-GAAT-CAG-TAGTTG-TTTT-GAA-ACAA-ATTTTAA--AT-ACTCCTTGTACTTGAAA-TATCA-----------C----CCACTCTAT-ATGGAGATAATTCAG-T---CTTCCACTT----------GCCCATGGAAGTT-G-G-GATATTT--CTTTTTTATTCAAAATATTG-TA-AATAATTTTAGAACAAT-TTTTCATGCAACAAAACAGGTTCAAAAAATACAGG-CATACATGGAT-TA-ATA--TTTTGTTTAAT-TGAATG-TCTATCAATAGATA----TACTTC---TTA--A-ATATGT--TGACATTGCAAGA-----AATAATGCTATTAT-ATTTCATTATTCAT---CACtcaacatt
gi|18 : gtttttgaattgcagcatatttttccacagaatattttaaacttcaaatgacatagtaatcctataaggttaggttctttacctctgcaatcagTATAGATTAG--TATATAAAGTTATGAAATTA-ATAACT------TT-GTTTTTATAAC-----A-A-AAA--GAAA----TTTCA-CCAAGA-AAC-T--AC-TACACAC--ATT---AAAAACGACTC--T-T-TCT--GA----AGTTTTT--agttttgataaagcttggatgagattgaaaaatatttt
gi|9 : tactccgatgaaagagactttgtataAACT------TT-ATC------AC-----A-CGAAACTGATAGGCCTTTCACCCAAAATAAT-AAGTTATATC-AT--AT----AAAACCA-TTT--T-T-TGT--GA----TGTCTTT--CTGTA-AA----TATGC---ATG----C-T-A------------AGA-GT--T-T--TAT---T-T-TCA-----GAACA---ATT--TAA---AAA-CATAT-GTTGG-ATTGTTTCAAC-TTC-C--T-T-ACGTAAT---AAAGAACAGT-CA----TC-TGAA---A--TGACATTTATT--T-CCT-TTAAGA-TAATATTTTGTTGGCAGA-GAC--T-TAT---TA-A----GAA-TTTGACATTGTAGCCACTGAACT-TGG-GTAT-CAG-TGGTTG-TTTT-AAA-ACAA-ACTTT-A--ATAACTCTTTC-----GTAC-CAACA----TT-ACTTT----CCA---GAT-GTACAGATAATTATG-T---GTTCCAATAT-TGGA--TAGCTTTGAGAA-TG-A-G-ATTATT
gi|24 : cTT------AC-----A-C-AAACTGACAGGTCTTTCACCCAAAATAAC-A--TT-TGTac
gi|8 : ACCTAATAAGAT-A--CT--GCATAC--ATT---AAAACCGATTC--T-T-TCT--AAACTTTGTCTTTATCTGTGTAG----GAT-C---A-A----C-T-CA-A------TCCACA-ATG-TCT--GG---AT-T-TTA-----TCACATGAATT--------AAA-TATATA--T-C-ATTGTCTCAACATTTTC--T-TGACAAAAT---ATATAACAAT-CA----TCATG-TTTTA--TTA-T-TTATC--T-TTTCC--AGG-TAATATCCAAC-AGCAAG-GAT--TCTATG--T--A----AAAATTCTAAATTGCAACCATTTAACT-AAA-G-AGTCAGCTC-TTGCTTTTGAAA-AAAATATTTTGA--A---CCCATTTT----GAAT-TAAAA----TA-TCACCTACTCCA---TAT-GAATT--TAATCCAG-T---CTTCCATTTC-CTTA--TAGCAGTTG-----T-G-GTATCATCA--TTT--TCAT------TACTA-TAAAAT-ACTTTGGAAC-AC-TTTTCAT
gi|8 : TTT--CTGGA-AAATTTTATGCCACATG----A---AA-AG-TG-TTCCAAA-GTA-T-T--gtggcataaaattttccagaaatatagg
gi|7 : acctaataagatactgcatacattaaaaccgattctttctaaactttgtctttatctgtgtaggatcaactcaatccacaatgtctggattttatcacatgaattaaatatatatcattgtctcaacattttcttgacaaaatatataacaatcatcatgttttattatttatcttttccaggtaatatccaacagcaaggattctatgtaaaaattctaaattgcaaccatttaactaaagagtcagctcttgcttttgaaaaaaatattttgaacccattttgaattaaaatatcacctactccatatgaatttaatccagtcttccatttccttatagcagttgtggtatcatcattttcattactataaCACA-ATG-T-TTGGATT-AT-A-TCA-----CAACA----TT--T-AGT-AAA-AATATGTTT-C-ATTGTCTCAACATTTTC--T-TGACA-AATTTAGGACAATCGTATG----TT-TT-A---A--T---A-TTAAT--C-TTT-TTCAGG-CAATATCCAACAGTAAGA-AAT--C-TATA--T--A----AAA-TTATAAATTGCAACCATTGAACT---G-AAA---AGTCAGTTG-TTTTGAAA--CAA-ATTTTAA--ACAtatagg
gi|21 : ttactgtatatgtaggctcatctcacctCAGA-AATGAT-TATGTGT--A----AAA-TTTTAAACTGTAACCATTAAGCA--GA-ATAATCAGT-AGTTG-TTTTGAAA--CAA-ATTTTAA--Acatcttgaactaaaatatcacatactccatatggtgttaattcagtcttccatttccttaaagcagttgggctatcctcattttcattcaaagaattataaattatttaggatcactgttcatgtggcataacattttcaaaagatataggtatacatggatcaggaattcgttagctaaatctctatcaatagataaacagtttaagcgttttgaaatagctgttttaatactattatatttcattacacatacctcatagagattgtatgtgcgtagaaatttatccaaggctaaaaaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ACAATTCCATTCTCCCCTTAGTGGTTACTTGCTGTACAGCAATTTATAATTGAACAGAAAAAAGAAAATGATAAACATAATTCTGTTTAGTTGATATACATATTAGTCAAAAATATTTTTCAATCTCATCCAAGCTTTATCAAAACTGTGATGAATAATGAAATATAATAGCATTATTTCTTGCAATGTCAACATATT
Unaligned ( gi|16 ): AACTCTTTCTGAAGTTTTTTCTGTAATAATATGAAAGACTCAAATCTAATTCCCAATGTTCGTGGGTTTATCATACATGAAGTAAAGACATGGAAATTCATTTCTCCAACATTATTAGTACAAAATCTACAACAGTCATTATTTTTTTTTCAAGTCAATGATTCTGTG
Unaligned ( gi|23 ): TTTTCAGCCTCATCCAAGCTTTATCAAAACTGCATTTTAAG
Alignments
lowQualScore : 1111 4444444444444444 111 1111 11 11 1 11111 222222 22 1111 22222222222222 333333333333333333 1111111 222222222 11111111 111111 1 111 222222 33333333333 2 222222 1111 1111 11 22 111111 4444444444444444444444 11111 1 2222222222 1111111 22222222222222 11 33333333333 111111111 66666666666666666666666 11 111111 333333333333 11 11 11 11 111111111111111 1 22222222222222 11111 4444444 2222222222222 111 11 11 77777777777777777777777777777777777777777777777777777777 111 333 2
lowQualScore : 5 2222 5 7 4444444444444444 5 000 5 1111 5 55 0 33 1 5 5 5 22222 5 66 5 2 333333 66 888 00 66 5 5 2222 5 6 88888888888888 5 3 6 5 444444444444444444 0 4444444 0 555555555 999999 5 88888888 5 5 5 0 3 888888 1 5 77 3 1 7 5 5 888 1 888 2 000000 1 1 77 00000000000 5 0 2 5 1 555555 0 0000 5 0000 5 55 5 00 0 888 5 00 66 1 66 111111 5555555555555555555555 0 77 2 4 3 22222 1 0 3 666 555 1 2 6 7 666 2 4 4 4 3333333333 1 3 3 9999999 3 44 55555555555555 55 22 33333333333 3 8 555555555 4 88 00000000000000000000000 3 33 4 88 4 444444 4 000000000000 8888 8 4 1 4 44 55 777 4 99 4 88 4 4 55 1 44 777 66 666666666666666 888 0 333 88 6 77 777 444 5 5 5 5 5 99 44 22222222222222 6 77777 6 6 1 0 1 1 1 888 1111111 8 1111111111111 8 444 11 5 11 8 11 11 0 77777777777777777777777777777777777777777777777777777777 2 0 8 0 0 111 0 0 1 777 7 0 333 3 11 6 7
lowQualScore : . .... . . ................ . ... . .... . .. . .. . . . . ..... . .. . . ...... .. ... .. .. . . .... . . .............. . . . . .................. . ....... . ......... ...... . ........ . . . . . ...... . . .. . . . . . ... . ... . ...... . . .. ........... . . . . . ...... . .... . .... . .. . .. . ... . .. .. . .. ...... ...................... . .. . . . ..... . . . ... ... . . . . ... . . . . .......... . . . ....... . .. .............. .. .. ........... . . ......... . .. ....................... . .. . .. . ...... . ............ .... . . . . .. .. ... . .. . .. . . .. . .. ... .. ............... ... . ... .. . .. ... ... . . . . . .. .. .............. . ..... . . . . . . . ... ....... . ............. . ... .. . .. . .. .. . ........................................................ . . . . . ... . . . ... . . ... . .. . .
lowQualScore : 7 1111 0 1 9999999999999999 7 000 7 6666 7 77 7 66 4 7 7 0 55555 0 99 0 0 111111 99 888 66 99 7 7 1111 7 7 88888888888888 0 4 5 0 777777777777777777 9 4444444 2 000000000 999999 0 11111111 0 0 0 4 2 444444 0 7 99 9 4 1 7 7 999 0 666 1 999999 0 0 44 66666666666 3 3 9 7 3 777777 1 6666 0 6666 0 44 0 11 4 888 0 55 11 7 33 555555 3333333333333333333333 5 22 3 2 3 33333 0 9 6 444 888 0 9 7 3 000 3 0 0 0 1111111111 0 6 6 6666666 6 44 99999999999999 00 44 11111111111 6 8 222222222 9 11 00000000000000000000000 8 55 0 99 0 444444 0 333333333333 1111 0 0 0 0 44 44 000 0 33 0 77 0 0 55 0 55 000 44 555555555555555 888 0 888 44 6 88 444 555 0 0 0 0 3 77 88 88888888888888 7 22222 7 7 0 3 0 4 0 000 6666666 0 2222222222222 0 000 66 6 88 0 00 00 8 44444444444444444444444444444444444444444444444444444444 8 8 0 8 8 888 8 2 0 777 3 7 000 3 77 7 3
consensus : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AA-ATGTTATTGTTTGG--TATATAGAATTATAAAATTT-AT------AACTTTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTT---TCTGANGTTTTT-C-TGTAN--ATATGCANG-C-T-AA-AN-T---G-TTCCANA-GTG-TT---ATA-AT-TTCANAACA---AT----T--T-A--AAA-CATATAG-TT----N-ATTGTCTC-AACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TGA----ATTANTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTNGGGT-A---T-CAGTTGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTCNTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAATTC-CGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAANAGGN-AT-ACA-TGG-T--GTATATA--TTTT-T---TNAATATCAGT-TC--TC--GACAGACA----TA-TTC---TTA-GA-ANAGT-T--TG--A----TTNNA--A-GTA-CTA--ATAATACTATTAT-ATTGCATTATACAT--ACACTCGCAAG---TCTAAATTTTTGTGTAAAA-ATCTTGTAACAATAAA
Reference ( family-723 ) : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACAAACT-C--T-CNACNTTGTATTT-GAACTTAAAGAAAGATAATGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AA-ATGTTATTGTTTGG--TATATAGAATTATAAAGTTT-AT------AACTTTGTT------AC-----A-C-AAACTGAGAGGNCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTT---TNTGATGTTTTT-C-TGTAN--ATATGCATG-C-T-AA-AG-T---G-TTCCANA-GTG-TT---ATA-AT-TTCANAACA---AT----T--T-A--AAA-CATATAG-TT----N-ATTGTCTC-AACATTCT-T-T-T-ACANAATGNACAACAGTCA----TCTG----AA-TGA----ATTATTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTTGGGT-A---T-CAGTTAGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTCNTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAATTT-TGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTTNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATNCAACAGAACGGGTTCAAAGTAAAAAGG--AT-A-A-TGG-T--GTA-ATA--TTTT-T---TNAATATNAGT-TC--TC--GACAGACA----TA-TTC---TTAGGA-ANA-T-T--TG--A----TTGNA--A-ACA-CTA--ATAACGCTATTAT-ATTGCATTATACAT--ACACTCGNAAGTTATCTAAATTCTTGTNNNAAACACNTTGTAACAATAAA
gi|1 : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-T-TT------TTCC--AAA---TTCGGC--ACA-GTAT-CTC----ACACCCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAA-TTGTA-ATA--------------TATAT-------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAA-ATTTATCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTTAC-CAAGATTT--AATTGCAACAAACT-C--T-CAACCTTGTATTT-GAAG--AAAGAAAGATAATGTAATAATCA-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TTGAACG-A-ATTAA---AA-ATGTTATTGTTTGG--TATACAGAATTATAAAATTG-AT------AACTTTATT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAATATAAC-A--T--TTGTA-ATAT-T---AAAACCAATTCTT---CGTGATGTCTTT-C-TGTAA--ATATGCATG-C-T-AA-AG-T---G-TTCCAAA-GTG-TTG--ATA-AT-TTCAGAACA---AT----T--T-A--AAA-CATATAG-TT----G-ATTGTTTC-GAC-TTCT-T-T-T-ACATAATGAACAACAGTTA----TCTG----AA-TGA----ATTATTT--TTTCTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA----T--T----TAT-T--AG-AA-TTCGATATTGTAG-CCATTGGACTTGGGT-A---TCCAGTTGGTTG-TTTTAAAAA-CAA-ACTTTAA--ATAACTCATTG-GCA-GTAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATC---TGTTCCAATTT-TGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTTATTTATC----AT-------ATCA-TATAAC-ACTTTGGAAC-AT-TTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGGAAAT-A-ATTGG-T--GTATACA--TTTT-T---TCCATATCAGT-TC--TT--GACAGACA----TA-TTC---TTAAGA-AAATT-T--TG--A----TTCTA--GTATA-CTA--ATAATACTATTAT-ATTGCATTGTACAT--ACACTGGCAAG---TCTAAATTTTTGTGTAAAA-ATCTTGTAGCAATAAA
gi|10 : TTG----TAT-T----GTT-TT--ACA-ACATTGATTTAT-ATGA-ATTGTTTGG--TATATAAAGTTTTGAAATTT-AT------TACTTTGTTTG----AT-----T-C-TAAT--AATGGACAATCACCAAAAATAAT-A--T--TAAAATACAT-T---GAAACGAATTCAG---TTTGTTGTTTT--CTTGTAT--ATATGCAT
gi|11 : tggtaggT-T--T-CAACATTATAATT-CATTTTTAAAAAA-----TTTATCAATCC-A-----ATTAGG------TTTGGCATTTT-TCCACATT-TGAAACA-A--CTAA---AATATACTGTT-TTTGA---ATATAGTATTACAAAGTTT-ATAACTAAAACTTTGAT------------------AACTGAATGGTACTTCTCCAAAAATTAC-A--T--TTTTG-GCAT-T---AAAACCTATACGT---TTAGATGTAGTA-T-TATAT--ATATGTAGA-CTT-AG-AT-T---ATTTCCAAA-ATACTT---GTACATATTCAC-ACA------------T-G--AAA-AATGTA---TGCAAA-ATAGTTTC-AACATTaatgcatacttggctgttatcataaagttaacctactactttgtcatagtacacagaaataatttgtacagtattttcagagttgtgtccactaaaagaacagatatcattatccacaagtttatttctttttcaaagtaacttttaacagggagaattc
gi|12 : gaatttttaaacagctatatattTTTTTT-ATTG----CTTATT-CTT---------------------AT-ATTCAT---CAA-T-AAATA-TATTG-AAA--CA-TACA-TATC-AG-TC-----TCTTT--TCT-TGTTGAA---CTTC--ACA---TTCG-C--ACC-GTAT-CTCTTGAACGCTCTTTC-AC-ACTACATTCATC---C--TATATAGTTATAG-TTGTATACA--------------TATAT-------ACAAAGT---------AC--T---T-GTACTTC--------AAATT-ATTCT-AA-TAATGTT----T-AGTCAAAAATATTTTTCCAATTTGCCCTAAAGTTTGTTTCGAATT---AATA-TTCCACGTATGATTT---ATTGCGACAAA
gi|13 : -TA-----T-TTT--TCT-TCTTCCTTCATTCC--ACAAATTTCG-C--ACA-GTAT-CTC----ACACTCTTCCAAC-ACT-T-TTCATC---CTGCATA-AATTATAG-TTG-A-AAA--------------TACAT-------ACATAGTA--------ACAAA---T-GTACTTC--------AA-TT-ATTCT---ATGATG-T----TCAGT
gi|14 : tttttttttttttttttttttttttttttttttttttttctctatttcatcaaataaatataacaaaacaataactattaatgttttttttttttttttgtttttttttttcTTTTTTCACTTTTTTTTTTT-ATTA----TTTA-TTCTTTTTCTCAT-------------AT-A---GC---CAA-T--------------AA--CA-TACAGTATT-AATTATTTTTT-TTT--TTC-TATT------TTCC---CA---TTCCGCTAACA-GTATCCTC----ACACTTTTTT-GCTATT-CTTTCATCCTGC-GCATA-ATCAGCAGTTTATATAAA--------------TATCC-------AAATAATAAAGGTAAAAC--AATTT-TTACTCCCTTTTCTAAA-TT-ATTCTAAAATGATG-T----TCAGTCAAAAATATTTATCCAAgc
gi|16 : cacaAACTCTT---TCTGAAGTTTTTTC-TGTAATAATATGAAAGAC-T-CA-AA-TCTAA-TTCC-CA-ATG-TTC--GTG-GG-TTTATCATAC--ATGAAGT--A-A--AGA-CATGGAAATT----C-ATT-TCTCCAACATTAT-TAG-T-ACAAAATCTACAACAGTC-----------------------ATTATTT--TTTTTTCAAGT-CAATGATTCTG
gi|17 : TTTTTGTTTTGTTTT-ATTA----TTTATT-CTTTTTCTCATGATTGGTACGTATATGATTTAT---ATT-T-A--TA-TA--GCAAAA-CACTACA-TATT-AA-TA-----T-TTT--TCT-TATT------TTCC--ACA---TTC-GC--ACA-GTAT-CTC----ACACTCTTTC-A----T-C------C---T-GCATA-A-TTATAG-TTGTA---A--------------TACAT-------tg
gi|18 : ctgtaTATAGATTAG--TATATAAAGTTATGAAATTA-AT------AACTTTGTTTTTATAAC-----A-A-AAA--GAAA----TTTCA-CCAAGA-AAC-T--A--CTACACACAT-T---AAAAACGACTCTT---TCTGAAGTTTTT-
gi|19 : tactccgatgaaagagactttgtataTA-ATT-ATAG-TTGTA-ATACATACATACATATATACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TTTATTCT-AAATGATGTT----C---TCAAAAATATTTTTCCAATTTGCCC-AAAATTTG--TCAAA---GAAA-A-TTTCA--CATGATTT--
gi|2 : TTTTT-ATCA----TTTATTCTTTTTCCTCA---------------T-ATTCAT---CAA-T-A--TA-TATAGCAAAAACA-TACA-TATT-AA-TA-----T-TT---CCA-TATT------TTCC--ACA---TTCG-C--ACATATAT-CTC----ACACTCCTTC-AC-CCT--------------GCATA-ATT-ATAG-TTGT-------------------TA----------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT-----CAGTCAAAAATATTTATCCAATTTGCCC-AAAGTTTA--TCAAATTTG-AA-AATTTCAC-AAAGATTT--AATTGCAACAAACTTC--T-CCACCTTGTATTT-GAA----AGAAAAGATAATGTAATAATCCAGTA-ATATTAGG-AG-T-TTTG----TTT-T----GTT-TTGAACACA-ATTAA---AA-ATG-TATTGTTTGG--TATACAGAATTATAAACTTGAAT------ACATTTATT------AC-----A---AAACTGAGAGGCCTTTCACCCAATATAAC-ATGT--CTGTA-ATAT-T---AAAACCATTTCTTCCGTTGGTTGCTCTT-C-TGTAA--ATATGCATG-C-T-AAGAG-T---G-TTCCAAA-GTG-TT---ATA-AT-TTCAAGAAA---AT----T--TAA--AAA-CATAT-G-TTG---G-ATTGTTTC-AAC-TTC--T-T-T-ACATAATGAACAACAGTTA----TCTGA---AA-TGA------CATTTA-TTTTTT-AAGA-TAAT-ATTT-GTTGGCAAATAA----T--T----AATTT--AAGAA-TTCGATATTGTAG-CCATTGGACTTGGGT-A---T-CAG-TGGTTG-TTTT-AAAA-CAA-ACTTTAAACATAACTCATTG-GCAGAAAAC-ATT----TCTT--T----CCA---GATAGTACAGA-ATTTCTGTGTTCCAATTTCTGGA--TAGCTTTTGGAA-TT-GAG-ATT-TTGTTATTTTATC----AT-------AATATTATAA--ACTTTGGAAC-ACATTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGGA-ATAA-A-TGG-T--GTATATACTTTTT-T---TCCATATCAGT-TC--TCTTGACAGACA----TA-TTC---TTA-AA-GAA-T-T--AG--A----T--AT--A-GTA-CTA--ATAATACTATTAT-ATTGCATTGTAC-T--ACACTTGCAAG---TCTAAATTTTTGTGAAAAACATCTTGT-ATAATAAA
gi|20 : TTTTTTTTTTTTTTTTTTTTTTAATTAATATCTTATTTCTTTTTCT----------------AT-ATTCAT---CAATT-A--TAGTA--GCAAA---A-CATA-TATT-AA-TA-----T-TTT--CCCATATT------TGCCAAATA---TTCG-----CA-G--T-TTC----A-ACCCTCTC-a
gi|21 : CCAACAGA-AA----TGAT----TATGTGTAA-AA-TTTTAAACTGTAA-CCATTAAGC-AGAATAA---T-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--A
gi|22 : ttgttacttcgccattttatatTTTTTTTTTTTTA-ATTA----TTTA-TTCTTTTTCTC---------------AT-ATTCATGTACAA-TAA--TA-TA--GCAAA--CATTACA-TCTTAAA-TA-----T-TTTTCCCC-TATT------TTCC--ACA---TTC-GC--AC
gi|24 : TT------AC-----A-C-AAACTGACAGGTCTTTCACCCAAAATAAC-A--T--TTG
gi|3 : TCAAAAATGTTTTTCCACAATGACC-ATAATTTT--TCAAACCTATAA-A-T------CACAATTTTGAATAGCAATATGCT-T--TTCAATGTTAAATTT-GAATTTCAAGTGAGATAAT-----AACCC-ATATATATTTGGTAGTT-T--G----TTC-T----GTT-TCAGACT-A-GAAAA---AA-ATAT-ATTGTTTTG--TGTATAGGATCAAAAAATTT-AG------CACTTTGTT------TCTTCCTG-T-GAG-TGGGAGA----TCACC--AAATAAC-A--CAATTGGC-AAGT-T---AAATCCAACTCTC---TCTTTGGTTTTTGCATATAT--ATATGTAAA-C-T-AA-AACT---A-CTCCATA-ATG-AC---ATA-AT-TTTTTCACA---AT----CGAT-A--AAA--ATAT-G-TT----GTATAGTTTC-GACATCTTGT-T-T-ACAAAAGGTACAGGAATCA-------G----AACTTACAAGATTGATT--TTCTTT-AA-A-TAGT-AATTAACAGGAAGA-A-----T--TCTAATATGA--AA-AA-TTCTGTATTGTAG-CCACTGAGCT---GT-AGAGT-CAG-TAGTTA-TTTTG-AAA-TAA-ACTTTAA--ATACATCTTT---CA-CCAACAATTATTGTATT--C----TCT---GAG-G---AGATAATT-AGAGTTCCA--CC-TGGA--AA--TT---GAA-TTAG-G-ATCAGTATAACTT--TC----AT--------TCA-TATG---ACTTTTGTAC-AT-TTTTCATATTATAGAATTGGTTCATAGTAA----------A-A-TGG-T--ATA-GAA--GGTT-T---TAAATACTAGT-TG--TT--GAC--GCAATTCTA-TTTAAATTAGGACACAGT-TCATA--A----TTGAAATA-GCA-CTT--ATAACGCT-TGATGGTTGC-TAATACATACACACTCAAAAGTTATCTA---TCTTGTTTTAAA-ACATT-TAACAAt
gi|4 : aTTG--AATTGCAGCATATT-T--TTCCACAGAATATTTTAAACTTCAA-----ATGACATAGTAATCCTATA-AGGTTAGG---TTCTTTA----CCTCT----GCAATCAGACA-A-AT-AA---AG-ATGT-ATTGTTTAACATATATAAAATTATAAAGTTT-AT------AGCTTTGTTT-----AT-----AAT-AGAC--AGTGGAATTTCACCTAATATAAT-A--T--T-GAC-ACAT-T---AAAACCAACTCTT---TCTGACGATTTT-C-TGTAT--ATATGGAGA-C-TCAA-AT-C---A-TTCCACA-ATG-TT---TGG-GT-TTTAAAACATG-AA----G--T-A--AAG--ACATGG-AT----C-ATTGTCTC-AACATTA--T-G-T-ACAAAATCTACAACAGTCATTAGTTTT----AA-C------ATTAATT--TTTTTC-AAG--TAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA--TCTAAACTGTAA-CCATTGAAC-AGAGA-A---T-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--AT-ACTCCTTGTACT-TGAA--ATA----TC-A--C----CCACTCTAT-ATGGAGATAATTCAGTCTTCCACTT----------GCCCATGGAAGTT-G-G-GATATTTCTTTTTTATTCAAAAT-------ATTG-TA-AATAATTTTAGAACAAT-TTTTCATGCAACAAAACAGGTTCAAAAAATACAGGC-AT-ACA-TGG-A--TTA-ATA--TTTTGT---TTAAT-TGAATGTCTATC--AATAGATA----TACTTC---TTA--A-ATA-TGT--TGACA----TTGCA--A-G-A---A--ATAATGCTATTAT-ATTTCATTATTCAT---CACgacaaaaa
gi|5 : gttt--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTC----T-AGTCAAAAATATTTATCCAATTTGCCC-GAAGTTTG--TCAAATTTG-AA-A-TTTCAC--AAGATTT--TATTGCAACAAACT-TCTT-CAACCTTGTATTT-AAA-----AGAAAGATAATGTAATAATCCAGTA-ATATTAGG-AGTT-TT-G----TTT-T----GTT-TTGAACA-A--TTAA---AA--TGT-ATTGTTTGG--TATAAAGAATTATAAAATTG-AT------AACT---------------------------GAGAGGCCTTTCACCCAATATAACCA--T--TTGTA-ATAT-T---AAT-CCAGTTCTT---CGTGATGTCTTT-C-TGTAA--ATAGGCATG-C-T-AAGAG-T---G-TTCCAAAAGTG-TT---ATA-AT-TTCAGAACA---AT----T--T-A--AAAACATAT-G-TT----G-GATGTTTC-AAC-TTCT-T-T---ACATAATG-ACA-CAGTTA----TCTG----AAATGA------CATTTA-TTTTTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA-----------------------A-TTCTAT----TAGGCCATTGGACTTGGGT-A---T-CAGT-GGTTA-TTTTAAAAAACAA-ACTTTAA--ATAACTCATTG-GCA-GAAAC-ATT----TCTT--T----CCA---GAT-GTACAGATAATTCTGTGTTCCAATTT-TGGATGTAGCTTTTGGAA-TG-A-A-ATTATTGagttttgataaagcttggatgagattgaaaaatatttt
gi|6 : A-ATTTATAA-TTTTA-AAA---------------ACAGCAAAAGAAAATAAT---------AA--A---TAGTA-TTC------------T-ATT-T-AGTTGATATACGAATCAGTCAAAAATATTTTTCAACCTCATCC-AGGCTTTA--TCAAAATTGTGC-A-TTTTAT--GTCATTG--AATTGCAGCATATTTC--T-CCACAAGATATTT-CAACTTCAA-----ATGACATAATAATCCTATA-AGGTTAGG---TTCTTTA----CTC-T----GCA-TCAAACA-A-ATTTT---TG-ATGT-ATTGTTTAA--CATATAAAATTATAAAGTTT-AT------AGCTTTGTT------ATCA---A-T-AGAC--AGTGGGATTTCACCTAATATAAT-A--T--TTGAC-ACAT-TTAAAAAACCAACTCTT---TCTGAAGTTTTT-C-TGTAT--AT---CATT-C-C-AC-AA-T---G-TTT--GG-GTT-TT---A-------TCACATGA---AG----T--A-A--AGA-CATGTA---T----C-ATTGTCTC-AACATTAT-T-TGT-ACAAAATCTACAACAGTCA----TTAG-------------------------TTTT-AACATTAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA-TTCTAAAGTGCAA-CCATTGAACAGAAGA-A---T-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--ATAcatttactgta
gi|7 : cacttccttctcgcagtggttacttgctacttgctgtgcagcCACA-ATG-TTTGGATT-AT-ATCACAACA----T----T--T-AGTAAA-AATATGT-TT----C-ATTGTCTC-AACATTTT-C-T-TGACA-AATTTAGGACAATCG----TATGTTTTAA-T------ATTAATC--TTTTTC-AGG--CAAT-ATCCAACAGTAAGA-AA----T--C----TATAT--AA-AA-TTATAAATTGCAA-CCATTGAACT--GAA-A------AGTCAGTTG-TTTTG-AAA-CAA-ATTTTAA--ACACATCTTGA-ACT-AAAAT-ATC----ACATACT----CCA---TATGGT---GTTAATTCAGTCTTCCATTTC-CTTA--AAGC------AG-TT-G-G-GCTATC-CTCATTT-TC----ATTCAAAGAATTA-TAAATT-ATTTAGGATC-AC-TGTTCATGTGGCATAACATTTTCAAAAGATATAGGT-AT-ACA-TGGATCAGGA-AT---TCGT-TAGCTAAATCTC----TA--TC--AATAGATA------------------A-ACAGT-T--TA--AGCGTTTTGA--A-ATAGCTGTTTTAATACTATTAT-ATTTCATTACACAT--AC-CTCATA
gi|8 : ttactgtatatgtaggctcatctcacctACCTAA--TAAG-A--TA-CTGCATACAT-T---AAAACCGATTCTT---TCTAAACTTTGT-C-TTTAT--CTGTGTAGG-A-T-CA-AC-TC--A-ATCCACA-ATG-TC---TGG-AT-TTTATCACATGAAT----T-------AAA-TATATA---T----C-ATTGTCTC-AACATTTT-C-T-TGACAAAATATATAACAATCA----TC-------A-TGTTTT-ATTATTTATCTTTTC-CAGG-TAAT-ATCCAAC-AGCAAG-GA----T--TC---TATGT--AA-AAATTCTAAATTGCAA-CCATTTAACTAAAGA-G---T-CAGCTC-TTGCTTTTGAAAA-AAATATTTTGA--A---CCCATTTTGAA-TTAAA-ATA----TCAC--CTACTCCA---TAT-GAATT--TAATCCAGTCTTCCATTTC-CTTA--TAGCAGTTG-----T-G-GTATCATCATTT--TCAT------T-------ACTA-TAAAAT-ACTTTGGAAC-AC-TTTTCATGTGGCATAAgagattgtatgtgcgtagaaatttatccaaggctaaaaaa
gi|9 : ------AACTTTATC------AC-----A-CGAAACTGATAGGCCTTTCACCCAAAATAAT-AA-G--TTATA-TCATAT---AAAACCA-TTTTT---TGTGATGTCTTT-C-TGTAA--ATATGCATG-C-T-AA---------------GA-GTT-TT---AT---T-TTCAGAACA---AT----T--T-A--AAAACATAT-G-TT----GGATTGTTTC-AAC-TTCC-T-T---ACGTAATAAAGAACAGTCA----TCTG----AAATGAC---ATTTATT--TCCTTT-AAGA-TAAT-ATTTTGTTGGCAGA-GA----C--T----TAT-T--AAGAA-TTTGACATTGTAG-CCACTGAACTTGGGT-A---T-CAGT-GGTTG-TTTT-AAAA-CAA-ACTTTAA---TAACTCTTTC-GTA-CCAAC-ATT----ACTT--T----CCA---GAT-GTACAGATAATTATGTGTTCCAATAT-TGGA--TAGCTTTGAGAA-TG-A-G-ATTATTaattttccagaaatatagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ACAATTCCATTCTCCCCTTAGTGGTTACTTGCTGTACAGCAATTTATAATTGAACAGAAAAAAGAAAATGATAAACATAATTCTGTTTAGTTGATATACATATTAGTCAAAAATATTTTTCAATCTCATCCAAGCTTTATCAAAACTGTGATGAATAATGAAATATAATAGCATTATTTCTTGCAATGTCAACATATT
Unaligned ( gi|23 ): TTTTCAGCCTCATCCAAGCTTTATCAAAACTGCATTTTAAG
Alignments
lowQualScore : 1111 4444444444444444 111 1111 11 11 1 11111 222222 22 1111 22222222222222 333333333333333333 1111111 222222222 11111111 111111 1 111 222222 2222 11 2 111111 111111 1111 11 2 111111 4444444444444444444444 11111 1 2222222222 1111111 1111111111111 11 33333333333 111111111 666666666666666666666666666 111111 333333333333 1111 11 222 11 1111 1111111 1 11 11111 22222222222222 11 4444444444444444444444 111 11 4444444444444444444444444444444444444444444444444444444 111 2222 111 1
lowQualScore : 5 2222 5 7 4444444444444444 5 000 5 1111 5 55 0 33 1 5 5 5 22222 5 66 5 2 333333 66 888 00 66 5 5 2222 5 6 88888888888888 5 3 6 5 444444444444444444 0 4444444 0 555555555 999999 5 88888888 5 5 5 0 3 888888 1 5 77 3 1 7 5 5 888 1 888 1 000000 1 1 77 1111 00 0 99 2 5 1 888888 000000 5 0000 5 55 5 00 0 888 5 3 66 1 4 111111 5555555555555555555555 0 77 2 4 3 22222 1 0 3 666 44 44 6 3 888 1 3 3 3 3333333333 1 3 3 9999999 3 44 666 9999999999999 55 22 33333333333 3 8 555555555 4 44 333333333333333333333333333 1 8888 4 88 4 444444 4 000000000000 2222 8 1 4 44 00 4 222 4 33 4 4 55 66 99 777 1 0000 5 3 5555555 888 0 3333 88 11 55 777 77 5 5 5 5 5 55555 5 22222222222222 6 7 66 6 6 1 2 1 1 1 1 1 99 5 9999999999999999999999 11 111 5 11 6666666666666666666666666666666666666666666666666666666 6 2 666 0 0 0000 7 777 0 0 6 7
lowQualScore : . .... . . ................ . ... . .... . .. . .. . . . . ..... . .. . . ...... .. ... .. .. . . .... . . .............. . . . . .................. . ....... . ......... ...... . ........ . . . . . ...... . . .. . . . . . ... . ... . ...... . . .. .... .. . .. . . . ...... ...... . .... . .. . .. . ... . . .. . . ...... ...................... . .. . . . ..... . . . ... .. .. . . ... . . . . .......... . . . ....... . .. ... ............. .. .. ........... . . ......... . .. ........................... . .... . .. . ...... . ............ .... . . . .. .. . ... . .. . . .. .. .. ... . .... . . ....... ... . .... .. .. .. ... .. . . . . . ..... . .............. . . .. . . . . . . . . . .. . ...................... .. ... . .. ....................................................... . . ... . . .... . ... . . . .
lowQualScore : 7 1111 0 1 9999999999999999 7 000 7 6666 7 77 7 66 4 7 7 0 55555 0 99 0 0 111111 99 888 66 99 7 7 1111 7 7 88888888888888 0 4 5 0 777777777777777777 9 4444444 2 000000000 999999 0 11111111 0 0 0 4 2 444444 0 7 99 9 4 1 7 7 999 0 666 0 999999 3 0 44 6666 44 7 33 9 7 3 777777 999999 0 6666 0 44 0 11 4 888 0 7 11 9 4 555555 3333333333333333333333 5 99 3 2 3 33333 0 9 6 444 66 33 2 3 888 0 6 6 6 8888888888 0 6 6 6666666 6 44 444 5555555555555 00 44 11111111111 6 8 222222222 9 77 000000000000000000000000000 0 4444 0 99 0 444444 0 333333333333 1111 0 0 0 44 33 0 333 0 88 0 0 55 00 55 000 4 6666 0 6 5555555 888 0 9999 44 66 44 444 11 6 0 0 0 0 33333 0 88888888888888 7 8 55 7 7 0 2 0 4 0 4 0 00 0 4444444444444444444444 66 222 0 00 4444444444444444444444444444444444444444444444444444444 7 5 555 2 2 0000 0 555 0 2 7 3
consensus : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AA-ATGT-ATTGTTTGG--TATATAGAATTATAAAATTTA-TAACT------TTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NGTTTTT-C-TGTAN--ATATGCANG-C-T-AA-AN-T---A-TTCCANA-GTG-TT---ATA-AT-TTCANAAC---A--AT----T--T-A--AAA-CATATAG-TT----N-ATTGTCTC-AACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TG---A----ATTANT--T-TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AATTCTANATTGTAG-CCATTGAACTNGAGN-AT-CAGTTGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAACA----TT-TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGTNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGAANA--NTT--TG--A----TTGNAA--GTA-CTA--ATAATGCTATTATA-TTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
Reference ( family-723 ) : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AA-ATGTTATTGTTTGG--TATATAGAATTATAAAATTTA-TAACT------TTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NGTTTTT-C-TGTAN--ATATGCANG-C-T-AA-AN-T---G-TTCCANA-GTG-TT---ATA-AT-TTCANAAC---A--AT----T--T-A--AAA-CATATAG-TT----N-ATTGTCTC-AACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TG---A----ATTANT--T-TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AATTCTANATTGTAG-CCATTGAACTNGGGT-AT-CAGTTGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAACA----TT-TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAANAGG-NATACATGGTGTATATA--TT--TT------TTNAATATCAGTTCTC--GACAGACA----TA-TTC---TT-AGAANA--GTT--TG--A----TTNNAA--GTA-CTA--ATAATACTATTATA-TTGCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
gi|1 : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-T-TT------TTCC--AAA---TTCGGC--ACA-GTAT-CTC----ACACCCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAA-TTGTA-ATA--------------TATAT-------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAA-ATTTATCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTTAC-CAAGATTT--AATTGCAACAAACT-C--T-CAACCTTGTATTT-GAAG--AAAGAAAGATAATGTAATAATCA-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TTGAACG-A-ATTAA---AA-ATGTTATTGTTTGG--TATACAGAATTATAAAATTGA-TAACT------TTATT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAATATAAC-A--T--TTGTA-ATAT-T---AAAACCAATTCTTCG--TGA-TGTCTTT-C-TGTAA--ATATGCATG-C-T-AA-AG-T---G-TTCCAAA-GTG-TTG--ATA-AT-TTCAGAAC---A--AT----T--T-A--AAA-CATATAG-TT----G-ATTGTTTC-GAC-TTCT-T-T-T-ACATAATGAACAACAGTTA----TCTG----AA-TG---A----ATTATT--T-TTTCTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA----T--T----TAT-T--AG-AATTCGATATTGTAG-CCATTGGACTTGGGT-ATCCAGTTGGTTG-TTTTAAAAA-CAA-ACTTTAA--ATAACTC-ATTG-GCA-GTAACA----TT-TCTT--C----CCA---GAT-GTACAGATAATC---TGTTCCAA-TTTTGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTTATTTATC----AT-------ATCA-TATAAC-ACTTTGGAAC-AT-TTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGGAAATAATTGGTGTATACA--TT--TT------TTCCATATCAGTTCTT--GACAGACA----TA-TTC---TTAAGAAAA--TTT--TG--A----TTCTAGT-ATA-CTA--ATAATACTATTATA-TTGCATTGTACAT--ACACTGGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAGCAATAAA
gi|10 : TTG----TAT-T----GTT-TT--ACA-ACATTGATTTAT-ATGA-ATTGTTTGG--TATATAAAGTTTTGAAATTTA-TTACT------TTGTTTG----AT-----T-C-TAAT--AATGGACAATCACCAAAAATAAT-A--T--TAAAATACAT-T---GAAACGAATTCAGTT--TGT-TGTTTTC-T-TGTAT--ATATGCA
gi|11 : tggtaggT-T--T-CAACATTATAATT-CATTTTTAAAAAATTTATC-----AATCC-A-----ATTAGG------TTTGGCATTTT-TCCACATT-TGAAACA-A--CTAA---AATATACTGTT-TTTGA---ATATAGTATTACAAAGTTTA-TAACTAAAACTTTGAT------A------------ACTGAATGGTACTTCTCCAAAAATTAC-A--T--TTTTG-GCAT-T---AAAACCTATACGTTT--AGA-TGTAGTA-T-TATAT--ATATGTAGA-CTT-AG-AT-T---ATTTCCAAA-ATACTT---GTACATATTCAC-AC---A-----------T-G--AAA-AATGTA---TGCAAA-ATAGTTTC-AACATTtaatgcatacttggctgttatcataaagttaacctactactttgtcatagtacacagaaataatttgtacagtattttcagagttgtgtccactaaaagaacagatatcattatccacaagtttatttctttttcaaagtaacttttaacagggagaattc
gi|12 : gaatttttaaacagctatatattTTTTTT-ATTG----CTTATT-CTT---------------------AT-ATTCAT---CAA-T-AAATA-TATTG-AAA--CA-TACA-TATC-AG-TC-----TCTTT--TCT-TGTTGAA---CTTC--ACA---TTCG-C--ACC-GTAT-CTCTTGAACGCTCTTTC-AC-ACTACATTCATC---C--TATATAGTTATAG-TTGTATACA--------------TATAT-------ACAAAGT---------AC--T---T-GTACTTC--------AAATT-ATTCT-AA-TAATGTT----T-AGTCAAAAATATTTTTCCAATTTGCCCTAAAGTTTGTTTCGAATT---AATA-TTCCACGTATGATTT---ATTGCGACAAA
gi|13 : -TA-----T-TTT--TCT-TCTTCCTTCATTCC--ACAAATTTCG-C--ACA-GTAT-CTC----ACACTCTTCCAAC-ACT-T-TTCATC---CTGCATA-AATTATAG-TTG-A-AAA--------------TACAT-------ACATAGTA--------ACAAA---T-GTACTTC--------AA-TT-ATTCT---ATGATG-T----TCAGT
gi|14 : tttttttttttttttttttttttttttttttttttttttctctatttcatcaaataaatataacaaaacaataactattaatgttttttttttttttttgtttttttttttcTTTTTTCACTTTTTTTTTTT-ATTA----TTTA-TTCTTTTTCTCAT-------------AT-A---GC---CAA-T--------------AA--CA-TACAGTATT-AATTATTTTTT-TTT--TTC-TATT------TTCC---CA---TTCCGCTAACA-GTATCCTC----ACACTTTTTT-GCTATT-CTTTCATCCTGC-GCATA-ATCAGCAGTTTATATAAA--------------TATCC-------AAATAATAAAGGTAAAAC--AATTT-TTACTCCCTTTTCTAAA-TT-ATTCTAAAATGATG-T----TCAGTCAAAAATATTTATCCAAgc
gi|15 : caca--A----TTGCAA--G-A---A--ATAATGCTATTATA-TTTCATTATTCAT---CAC
gi|16 : acaattccattctccccttagtggttacttgctgtacagcaatttataattgaacagaaaaaagaaaatgataaacataattctgtttagttgatatacatattagtcaaaaatatttttcaatctcatccaagctttatcaaaactAACTCTTTC--TGA-AGTTTTTTC-TGTAATAATATGAAAGAC-T-CA-AA-TCTAA-TTCC-CA-ATG-TTC--GTG-GG-TTTATCAT---AC-ATGAAGT--A-A--AGA-CATGGAAATT----C-ATT-TCTCCAACATTAT-TAG-T-ACAAAATCTACAACAGTC--------------------------ATTATT--T-TTTTTTCAAGT-CAATGATTCTGgtcaacatatt
gi|17 : TTTTTGTTTTGTTTT-ATTA----TTTATT-CTTTTTCTCATGATTGGTACGTATATGATTTAT---ATT-T-A--TA-TA--GCAAAA-CACTACA-TATT-AA-TA-----T-TTT--TCT-TATT------TTCC--ACA---TTC-GC--ACA-GTAT-CTC----ACACTCTTTC-A----T-C------C---T-GCATA-A-TTATAG-TTGTA---A--------------TACAT-------tg
gi|18 : ctgtaTATAGATTAG--TATATAAAGTTATGAAATTAA-TAACT------TTGTTTTTATAAC-----A-A-AAA--GAAA----TTTCA-CCAAGA-AAC-T--A--CTACACACAT-T---AAAAACGACTCTTTC--TGA-AGTTTTT-
gi|19 : tactccgatgaaagagactttgtataTA-ATT-ATAG-TTGTA-ATACATACATACATATATACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TTTATTCT-AAATGATGTT----C---TCAAAAATATTTTTCCAATTTGCCC-AAAATTTG--TCAAA---GAAA-A-TTTCA--CATGATTT--
gi|2 : TTTTT-ATCA----TTTATTCTTTTTCCTCA---------------T-ATTCAT---CAA-T-A--TA-TATAGCAAAAACA-TACA-TATT-AA-TA-----T-TT---CCA-TATT------TTCC--ACA---TTCG-C--ACATATAT-CTC----ACACTCCTTC-AC-CCT--------------GCATA-ATT-ATAG-TTGT-------------------TA----------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT-----CAGTCAAAAATATTTATCCAATTTGCCC-AAAGTTTA--TCAAATTTG-AA-AATTTCAC-AAAGATTT--AATTGCAACAAACTTC--T-CCACCTTGTATTT-GAA----AGAAAAGATAATGTAATAATCCAGTA-ATATTAGG-AGTT-TT-G----TTT-T----GTT-TTGAACACA-ATTAA---AA-ATGT-ATTGTTTGG--TATACAGAATTATAAACTTGAATACAT------TTATT------AC-----A---AAACTGAGAGGCCTTTCACCCAATATAAC-ATGT--CTGTA-ATAT-T---AAAACCATTTCTTCCGTTGGTTGCTCTT-C-TGTAA--ATATGCATG-C-T-AAGAG-T---G-TTCCAAA-GTG-TT---ATA-AT-TTCAAGAA---A--AT----T--TAA--AAA-CATAT-G-TTG---G-ATTGTTTC-AAC-TTC--T-T-T-ACATAATGAACAACAGTTA----TCTGA---AA-TG---A------CATT--TATTTTTT-AAGA-TAAT-ATTT-GTTGGCAAATAA----T--T----AATTT--AAGAATTCGATATTGTAG-CCATTGGACTTGGGT-AT-CAG-TGGTTG-TTTT-AAAA-CAA-ACTTTAAACATAACTC-ATTG-GCAGAAAACA----TT-TCTT--T----CCA---GATAGTACAGA-ATTTCTGTGTTCCAATTTCTGGA--TAGCTTTTGGAA-TT-GAG-ATT-TTGTTATTTTATC----AT-------AATATTATAA--ACTTTGGAAC-ACATTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGG-AATAAATGGTGTATATACTTT--TT------TTCCATATCAGTTCTCTTGACAGACA----TA-TTC---TT-A-AAGA--ATT--AG--A----T--ATA--GTA-CTA--ATAATACTATTATA-TTGCATTGTAC-T--ACACTTGCAAG---TCTAAATT---TTTGTGAAAAACATCTTGT-ATAATAAA
gi|20 : TTTTTTTTTTTTTTTTTTTTTTAATTAATATCTTATTTCTTTTTCT----------------AT-ATTCAT---CAATT-A--TAGTA--GCAAA---A-CATA-TATT-AA-TA-----T-TTT--CCCATATT------TGCCAAATA---TTCG-----CA-G--T-TTC----A-ACCCTCTC-a
gi|21 : CCAACAGA-AA----TGAT----TATGTGTAA-AATTTTAAACTGTAA-CCATTAAGC-AGAATAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--A
gi|22 : ttgttacttcgccattttatatTTTTTTTTTTTTA-ATTA----TTTA-TTCTTTTTCTC---------------AT-ATTCATGTACAA-TAA--TA-TA--GCAAA--CATTACA-TCTTAAA-TA-----T-TTTTCCCC-TATT------TTCC--ACA---TTC-GC--AC
gi|24 : TT------AC-----A-C-AAACTGACAGGTCTTTCACCCAAAATAAC-A--T--TTG
gi|3 : TCAAAAATGTTTTTCCACAATGACC-ATAATTTT--TCAAACCTATAA-A-T------CACAATTTTGAATAGCAATATGCT-T--TTCAATGTTAAATTT-GAATTTCAAGTGAGATAA-----TAACCC-ATATATATTTGGTAGTT-T--G----TTC-T----GTT-TCAGACT-A-GAAAA---AA-ATAT-ATTGTTTTG--TGTATAGGATCAAAAAATTTA-GCACT------TTGTT------TCTTCCTG-T-GAG-TGGGAGA----TCACC--AAATAAC-A--CAATTGGC-AAGT-T---AAATCCAACTCTCTC--TTT-GGTTTTTGCATATAT--ATATGTAAA-C-T-AA-AACT---A-CTCCATA-ATG-AC---ATA-AT-TTTTTCAC---A--AT----CGAT-A--AAA--ATAT-G-TT----GTATAGTTTC-GACATCTTGT-T-T-ACAAAAGGTACAGGAATCA-------G----AACTT---ACAAGATTGAT--T-TTCTTT-AA-A-TAGT-AATTAACAGGAAGA-A-----T--TCTAATATGA--AA-AATTCTGTATTGTAG-CCACTGAGCTGTAGA-GT-CAGT-AGTTA-TTTTGAAA--TAA-ACTTTAA--ATACATC-TTT---CA-CCAACAATTATTGTATT--C----TCT---GAG-G---AGATAATT-AGAGTTCCA---CCTGGA--AA----TTG-AA-TTAG-G-ATCAGTATAACTTT--C----AT--------TCA-TATGA---CTTTTGTAC-AT-TTTTCATATTATAGAATTGGTTCATAGTAAAATGG-TATAGAAGGT--------------T------TTAAATACTAGTTGTT--GACG--CAATTCTA-TTTAAATT-AGGACACAGTTCATA--A----TTGAAATAGCA-CTT--ATAACGCT-TGATGGTTGC-TAATACATACACACTCAAAAGTTATCTA---T---CTTGTTTTAAA-ACATT-TAACAAt
gi|4 : aTTG--AATTGCAGCATATT-T--TTCCACAGAATATTTTAAACTTCAA-----ATGACATAGTAATCCTATA-AGGTTAGG---TTCTTTA----CCTCT----GCAATCAGACA-A-AT-AA---AG-ATGT-ATTGTTTAACATATATAAAATTATAAAGTTTA-TAGCT------TTGTTT-----AT-----AAT-AGAC--AGTGGAATTTCACCTAATATAAT-A--T--T-GAC-ACAT-T---AAAACCAACTCTTTC--TGA-CGATTTT-C-TGTAT--ATATGGAGA-C-TCAA-AT-C---A-TTCCACA-ATG-TT---TGG-GT-TTTAAAAC---ATGAA----G--T-A--AAG--ACATGG-AT----C-ATTGTCTC-AACATTA--T-G-T-ACAAAATCTACAACAGTCATTAGTTTT----AA-C---------ATTAAT--T-TTTTTC-AAG--TAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA-TCTAAACTGTAA-CCATTGAAC-AGAGA-AT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--AT-ACTC-CTTGTACT-TGAA-A----TA-TC-A--C----CCACTCTAT-ATGGAGATAATTCAGTCTTCCAC-TT---------GCCCATGGAAGTT-G-G-GATATTTCTTTTTTATTCAAAAT-------ATTG-TA-AATAATTTTAGAACAAT-TTTTCATGCAACAAAACAGGTTCAAAAAATACAGG-CATACATGGATTA-ATA--TT--TTGTTTAATTGAATGTC---TATC--AATAGATA----TACTTC---TT-A-AATA--TGT--TGACA----TTGCAA--G-A---A--ATAATGCTATTATA-TTTCATTATTCAT---CACgacaaaaa
gi|5 : gttt--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTC----T-AGTCAAAAATATTTATCCAATTTGCCC-GAAGTTTG--TCAAATTTG-AA-A-TTTCAC--AAGATTT--TATTGCAACAAACT-TCTT-CAACCTTGTATTT-AAA-----AGAAAGATAATGTAATAATCCAGTA-ATATTAGG-AGTT-TT-G----TTT-T----GTT-TTGAACA-A--TTAA---AA--TGT-ATTGTTTGG--TATAAAGAATTATAAAATTGA-TAACT---------------------------------GAGAGGCCTTTCACCCAATATAACCA--T--TTGTA-ATAT-T---AAT-CCAGTTCTTCG--TGA-TGTCTTT-C-TGTAA--ATAGGCATG-C-T-AAGAG-T---G-TTCCAAAAGTG-TT---ATA-AT-TTCAGAAC---A--AT----T--T-A--AAAACATAT-G-TT----G-GATGTTTC-AAC-TTCT-T-T---ACATAATG-ACA-CAGTTA----TCTG----AAATG---A------CATT--TATTTTTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA-----------------------ATTCTAT----TAGGCCATTGGACTTGGGT-AT-CAGT-GGTTA-TTTTAAAAAACAA-ACTTTAA--ATAACTC-ATTG-GCA-GAAACA----TT-TCTT--T----CCA---GAT-GTACAGATAATTCTGTGTTCCAA-TTTTGGATGTAGCTTTTGGAA-TG-A-A-ATTATTG--CATTTAagttttgataaagcttggatgagattgaaaaatatttt
gi|6 : A-ATTTATAA-TTTTA-AAA---------------ACAGCAAAAGAAAATAAT---------AA--A---TAGTA-TTC------------T-ATT-T-AGTTGATATACGAATCAGTCAAAAATATTTTTCAACCTCATCC-AGGCTTTA--TCAAAATTGTGC-A-TTTTAT--GTCATTG--AATTGCAGCATATTTC--T-CCACAAGATATTT-CAACTTCAA-----ATGACATAATAATCCTATA-AGGTTAGG---TTCTTTA----CTC-T----GCA-TCAAACA-A-ATTTT---TG-ATGT-ATTGTTTAA--CATATAAAATTATAAAGTTTA-TAGCT------TTGTT------ATCA---A-T-AGAC--AGTGGGATTTCACCTAATATAAT-A--T--TTGAC-ACAT-TTAAAAAACCAACTCTTTC--TGA-AGTTTTT-C-TGTAT--AT---CATT-C-C-AC-AA-T---G-TTT--GG-GTT-TT---A-------TCACATG---A--AG----T--A-A--AGA-CATGTA---T----C-ATTGTCTC-AACATTAT-T-TGT-ACAAAATCTACAACAGTC--------------------------ATTAG-------TTTT-AACATTAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AATTCTAAAGTGCAA-CCATTGAACAGAAGA-AT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--ATActgta
gi|7 : cacttccttctcgcagtggttacttgctacttgctgtgcagcTTA-C-TGTA----TATGTAGG-C-T-CA-TC-TC--A-CCTCACA-ATG-TTTGGATT-AT-ATCACAAC---A---T----T--T-AGTAAA-AATATGT-TT----C-ATTGTCTC-AACATTTT-C-T-TGACA-AATTTAGGACAATCG----TATGTTTTAA-T---------ATTAAT--C-TTTTTC-AGG--CAAT-ATCCAACAGTAAGA-AA----T--C----TATAT--AA-AATTATAAATTGCAA-CCATTGAACTGAAA------AGTCAGTTG-TTTTG-AAA-CAA-ATTTTAA--ACACATC-TTGA-ACT-AAAATA----TC-ACATACT----CCA---TATGGT---GTTAATTCAGTCTTCCAT-TTCCTTA--AAGC------AG-TT-G-G-GCTATC-CTCATTT-TC----ATTCAAAGAATTA-TAAATT-ATTTAGGATC-AC-TGTTCATGTGGCATAACATTTTCAAAAGATATAGG-TATACATGGATCAGGAA--TTCGTTAG----CTAAATCTC---TATC--AATAGATA------------------AACA--GTT--TA--AGCGTTTTGAA--ATAGCTGTTTTAATACTATTATA-TTTCATTACACAT--AC-CTCATAG-------AGATTGTATGTGCGTAGAA-ATTT
gi|8 : ACCTAA--TAAG-A--TA-CTGCATACAT-T---AAAACCGATTCTTTC--TAA-ACTTTGT-C-TTTAT--CTGTGTAGG-A-T-CA-AC-TC--A-ATCCACA-ATG-TC---TGG-AT-TTTATCACATGA--AT----T-------AAA-TATATA---T----C-ATTGTCTC-AACATTTT-C-T-TGACAAAATATATAACAATCA----TC-------A-TGTTTT----ATTATTTAT-CTTTTC-CAGG-TAAT-ATCCAA-CAGCAAG-GA----T--TC---TATGTA-AA-AATTCTAAATTGCAA-CCATTTAACTAAAGA-GT-CAGCT-CTTGCTTTTGAAAA-AAATATTTTG-----AACCCATTTT-GAA-TTAAAA----TA-TCAC--CTACTCCA---TAT-GAAT--TTAATCCAGTCTTCCAT-TTCCTTA--TAGCAGTTG-----T-G-GTATCATCATT--TTCAT------T-------ACTA-TAAAAT-ACTTTGGAAC-AC-TTTTCATGTGGCATAAatccaaggctaaaaaa
gi|9 : AACT------TTATC------AC-----A-CGAAACTGATAGGCCTTTCACCCAAAATAAT-AA-G--TTATA-TCATAT---AAAACCA-TTTTTTG--TGA-TGTCTTT-C-TGTAA--ATATGCATG-C-T-AA---------------GA-GTT-TT---AT---T-TTCAGAAC---A--AT----T--T-A--AAAACATAT-G-TT----GGATTGTTTC-AAC-TTCC-T-T---ACGTAATAAAGAACAGTCA----TCTG----AAATG---AC---ATTTAT--T-TCCTTT-AAGA-TAAT-ATTTTGTTGGCAGA-GA----C--T----TAT-T--AAGAATTTGACATTGTAG-CCACTGAACTTGGGT-AT-CAGT-GGTTG-TTTT-AAAA-CAA-ACTTTAA---TAACTC-TTTC-GTA-CCAACA----TT-ACTT--T----CCA---GAT-GTACAGATAATTATGTGTTCCAA-TATTGGA--TAGCTTTGAGAA-TG-A-G-ATTATTaattttccagaaatatagg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTTTCAGCCTCATCCAAGCTTTATCAAAACTGCATTTTAAG
Alignments
lowQualScore : 1111 4444444444444444 111 1111 11 11 1 11111 222222 22 1111 22222222222222 333333333333333333 1111111 222222222 11111111 111111 1 111 222222 2222 11 2 222222 1111 1111 111111 4444444444444444444444 11111 1 2222222222 1111111 22222222222222222 11 33333333333 111111111 666666666666666666666666666 111111 333333333333 1111 222 11 111111111111111 1 11 11111 22222222222222 11111 4444444444444444444444 111 11 555555555555555555555555555555555555555555555555555555555 111 2222 111 1
lowQualScore : 5 2222 5 7 4444444444444444 5 000 5 1111 5 55 0 33 1 5 5 5 22222 5 66 5 2 333333 66 888 00 66 5 5 2222 5 6 88888888888888 5 3 6 5 444444444444444444 0 4444444 0 555555555 999999 5 88888888 5 5 5 0 3 888888 1 5 77 3 1 7 5 5 888 1 888 1 000000 1 1 77 1111 00 0 99 2 5 1 555555 0 0000 5 0000 5 55 5 999999999 4 55 66 66 111111 5555555555555555555555 0 77 2 4 3 22222 1 0 3 666 44 44 6 3 888 1 2 3 3 3 4444444444 1 33 3 8888888 3 66 33333333333333333 55 22 33333333333 3 8 555555555 4 44 333333333333333333333333333 1 8888 4 88 4 444444 4 000000000000 2222 8 1 4 22 1 4 666 4 88 4 4 55 66 99 777 66 666666666666666 888 0 3333 88 11 55 777 444 5 5 5 5 55555 11 22222222222222 6 77777 6 6 1 2 1 1 1 1 1 99 1 8888888888888888888888 11 111 1 11 0 333333333333333333333333333333333333333333333333333333333 6 1 666 0 0 0000 7 777 0 0 6 7
lowQualScore : . .... . . ................ . ... . .... . .. . .. . . . . ..... . .. . . ...... .. ... .. .. . . .... . . .............. . . . . .................. . ....... . ......... ...... . ........ . . . . . ...... . . .. . . . . . ... . ... . ...... . . .. .... .. . .. . . . ...... . .... . .... . .. . ......... . .. .. .. ...... ...................... . .. . . . ..... . . . ... .. .. . . ... . . . . . .......... . .. . ....... . .. ................. .. .. ........... . . ......... . .. ........................... . .... . .. . ...... . ............ .... . . . .. . . ... . .. . . .. .. .. ... .. ............... ... . .... .. .. .. ... ... . . . . ..... .. .............. . ..... . . . . . . . . . .. . ...................... .. ... . .. . ......................................................... . . ... . . .... . ... . . . .
lowQualScore : 7 1111 0 1 9999999999999999 7 000 7 6666 7 77 7 66 4 7 7 0 55555 0 99 0 0 111111 99 888 66 99 7 7 1111 7 7 88888888888888 0 4 5 0 777777777777777777 9 4444444 2 000000000 999999 0 11111111 0 0 0 4 2 444444 0 7 99 9 4 1 7 7 999 0 666 0 999999 3 0 44 6666 44 7 33 9 7 3 777777 1 6666 0 6666 0 44 0 999999999 4 33 11 33 555555 3333333333333333333333 5 99 3 2 3 33333 0 9 6 444 66 33 2 3 888 6 3 6 6 6 9999999999 0 88 6 9999999 6 55 33333333333333333 00 44 11111111111 6 8 222222222 9 77 000000000000000000000000000 0 4444 0 99 0 444444 0 333333333333 1111 0 0 0 11 0 0 555 0 77 0 0 55 00 55 000 44 555555555555555 888 0 9999 44 66 44 444 555 0 0 0 0 33333 66 88888888888888 7 22222 7 7 0 2 0 4 0 4 0 00 0 2222222222222222222222 66 222 0 00 8 666666666666666666666666666666666666666666666666666666666 7 0 555 2 2 0000 0 555 0 2 7 3
consensus : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATGT-ATTGTTTG-G--TATATAGAATTATAAAATTT-ATAACT------TTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NGTTTTT-C-TGTAN--ATATGCANG-C-T-AA-AN-T---A-TTCCANA-ATG-TT---ATG-AT-TTCANNAC---A--AT----T--T-A--AAA-CATATAG-TT----N-ATTGTCTC-AACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TG---A----ATTANT--T-TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AATTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGNNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGA--ANANTT--TG--A-----TTGNA--A-GTA-CTA--ATAATGCTATTAT-ATTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
Reference ( family-723 ) : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATGT-ATTGTTTG-G--TATATAGAATTATAAAATTT-ATAACT------TTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NGTTTTT-C-TGTAN--ATATGCANG-C-T-AA-AN-T---A-TTCCANA-GTG-TT---ATA-AT-TTCANAAC---A--AT----T--T-A--AAA-CATATAG-TT----N-ATTGTCTC-AACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TG---A----ATTANT--T-TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AATTCTANATTGTAG-CCATTGAACTNGAGNAT-CAGTTGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGTNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGA--ANANTT--TG--A-----TTGNA--A-GTA-CTA--ATAATGCTATTAT-ATTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
gi|1 : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-T-TT------TTCC--AAA---TTCGGC--ACA-GTAT-CTC----ACACCCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAA-TTGTA-ATA--------------TATAT-------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAA-ATTTATCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTTAC-CAAGATTT--AATTGCAACAAACT-C--T-CAACCTTGTATTT-GAAG--AAAGAAAGATAATGTAATAATCA-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TTGAACG-A-ATTAA---AAATGTTATTGTTTG-G--TATACAGAATTATAAAATTG-ATAACT------TTATT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAATATAAC-A--T--TTGTA-ATAT-T---AAAACCAATTCTTCG--TGA-TGTCTTT-C-TGTAA--ATATGCATG-C-T-AA-AG-T---G-TTCCAAA-GTG-TTG--ATA-AT-TTCAGAAC---A--AT----T--T-A--AAA-CATATAG-TT----G-ATTGTTTC-GAC-TTCT-T-T-T-ACATAATGAACAACAGTTA----TCTG----AA-TG---A----ATTATT--T-TTTCTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA----T--T----TAT-T--AG-AATTCGATATTGTAG-CCATTGGACTTGGGTATCCAGTTGGTTG-TTTTAAAAA-CAA-ACTTTAA--ATAACTC-ATTG-GCA-GTAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATC---TGTTCCAA-TTTTGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTTATTTATC----AT-------ATCA-TATAAC-ACTTTGGAAC-AT-TTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGGAAATAATTGGTGTATACA--TT--TT------TTCCATATCAGTTCTT--GACAGACA----TA-TTC---TTAAGA--AAATTT--TG--A-----TTCTA--GTATA-CTA--ATAATACTATTAT-ATTGCATTGTACAT--ACACTGGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAGCAATAAA
gi|10 : TTG----TAT-T----GTT-TT--ACA-ACATTGATTTATATGA-ATTGTTTG-G--TATATAAAGTTTTGAAATTT-ATTACT------TTGTTTG----AT-----T-C-TAAT--AATGGACAATCACCAAAAATAAT-A--T--TAAAATACAT-T---GAAACGAATTCAGTT--TGT-TGTTTTC-T-TGTAT--ATATGCA
gi|11 : tggtaggT-T--T-CAACATTATAATT-CATTTTTAAAAAATTTATC-----AATCC-A-----ATTAGG------TTTGGCATTTT-TCCACATT-TGAAACA-A-CT--A---AAATAT-ACTGTTTTTG--AATATAGTATTACAAAGTTT-ATAACTAAAACTTTGAT------A------------ACTGAATGGTACTTCTCCAAAAATTAC-A--T--TTTTG-GCAT-T---AAAACCTATACGTTT--AGA-TGTAGTA-T-TATAT--ATATGTAGA-CTT-AG-AT-T---ATTTCCAAA-ATACTT---GTACATATTCAC-AC---A-----------T-G--AAA-AATGTA---TGCAAA-ATAGTTTC-AACATTtaatgcatacttggctgttatcataaagttaacctactactttgtcatagtacacagaaataatttgtacagtattttcagagttgtgtccactaaaagaacagatatcattatccacaagtttatttctttttcaaagtaacttttaacagggagaattc
gi|12 : gaatttttaaacagctatatattTTTTTT-ATTG----CTTATT-CTT---------------------AT-ATTCAT---CAA-T-AAATA-TATTG-AAA--CA-TACA-TATC-AG-TC-----TCTTT--TCT-TGTTGAA---CTTC--ACA---TTCG-C--ACC-GTAT-CTCTTGAACGCTCTTTC-AC-ACTACATTCATC---C--TATATAGTTATAG-TTGTATACA--------------TATAT-------ACAAAGT---------AC--T---T-GTACTTC--------AAATT-ATTCT-AA-TAATGTT----T-AGTCAAAAATATTTTTCCAATTTGCCCTAAAGTTTGTTTCGAATT---AATA-TTCCACGTATGATTT---ATTGCGACAAA
gi|13 : -TA-----T-TTT--TCT-TCTTCCTTCATTCC--ACAAATTTCG-C--ACA-GTAT-CTC----ACACTCTTCCAAC-ACT-T-TTCATC---CTGCATA-AATTATAG-TTG-A-AAA--------------TACAT-------ACATAGTA--------ACAAA---T-GTACTTC--------AA-TT-ATTCT---ATGATG-T----TCAGT
gi|14 : tttttttttttttttttttttttttttttttttttttttctctatttcatcaaataaatataacaaaacaataactattaatgttttttttttttttttgtttttttttttcTTTTTTCACTTTTTTTTTTT-ATTA----TTTA-TTCTTTTTCTCAT-------------AT-A---GC---CAA-T--------------AA--CA-TACAGTATT-AATTATTTTTT-TTT--TTC-TATT------TTCC---CA---TTCCGCTAACA-GTATCCTC----ACACTTTTTT-GCTATT-CTTTCATCCTGC-GCATA-ATCAGCAGTTTATATAAA--------------TATCC-------AAATAATAAAGGTAAAAC--AATTT-TTACTCCCTTTTCTAAA-TT-ATTCTAAAATGATG-T----TCAGTCAAAAATATTTATCCAAgc
gi|15 : cacaA--ATATGT--TG--ACA---TTGCA--A-G-A---A--ATAATGCTATTAT-ATTTCATTATTCAT---CAC
gi|16 : acaattccattctccccttagtggttacttgctgtacagcaatttataattgaacagaaaaaagaaaatgataaacataattctgtttagttgatatacatattagtcaaaaatatttttcaatctcatccaagctttatcaaaactAACTCTTTC--TGA-AGTTTTTTC-TGTAATAATATGAAAGAC-T-CA-AA-TCTAA-TTCC-CA-ATG-TTC--GTG-GG-TTTATCAT---AC-ATGAAGT--A-A--AGA-CATGGAAATT----C-ATT-TCTCCAACATTAT-TAG-T-ACAAAATCTACAACAGTC--------------------------ATTATT--T-TTTTTTCAAGT-CAATGATTCTG
gi|17 : TTTTTGTTTTGTTTT-ATTA----TTTATT-CTTTTTCTCATGATTGGTACGTATATGATTTAT---ATT-T-A--TA-TA--GCAAAA-CACTACA-TATT-AA-TA-----T-TTT--TCT-TATT------TTCC--ACA---TTC-GC--ACA-GTAT-CTC----ACACTCTTTC-A----T-C------C---T-GCATA-A-TTATAG-TTGTA---A--------------TACAT-------tg
gi|18 : ctgtaATAT-ATAGATTA-G--TATATAAAGTTATGAAATTA-ATAACT------TTGTTTTTATAAC-----A-A-AAA--GAAA----TTTCA-CCAAGA-AAC-T--A--CTACACACAT-T---AAAAACGACTCTTTC--TGA-AGTTTTT-
gi|19 : tactccgatgaaagagactttgtTA-ATT-ATAG-TTGTA-ATACATACATACATATATACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TTTATTCT-AAATGATGTT----C---TCAAAAATATTTTTCCAATTTGCCC-AAAATTTG--TCAAA---GAAA-A-TTTCA--CATGATTT--
gi|2 : TTTTT-ATCA----TTTATTCTTTTTCCTCA---------------T-ATTCAT---CAA-T-A--TA-TATAGCAAAAACA-TACA-TATT-AA-TA-----T-TT---CCA-TATT------TTCC--ACA---TTCG-C--ACATATAT-CTC----ACACTCCTTC-AC-CCT--------------GCATA-ATT-ATAG-TTGT-------------------TA----------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT-----CAGTCAAAAATATTTATCCAATTTGCCC-AAAGTTTA--TCAAATTTG-AA-AATTTCAC-AAAGATTT--AATTGCAACAAACTTC--T-CCACCTTGTATTT-GAA----AGAAAAGATAATGTAATAATCCAGTA-ATATTAGG-AG-T-TTTG----TTT-T----GTT-TTGAACACA-ATTAA---AAATGT-ATTGTTTG-G--TATACAGAATTATAAACTTGAATACAT------TTATT------AC-----A---AAACTGAGAGGCCTTTCACCCAATATAAC-ATGT--CTGTA-ATAT-T---AAAACCATTTCTTCCGTTGGTTGCTCTT-C-TGTAA--ATATGCATG-C-T-AAGAG-T---G-TTCCAAA-GTG-TT---ATA-AT-TTCAAGAA---A--AT----T--TAA--AAA-CATAT-G-TTG---G-ATTGTTTC-AAC-TTC--T-T-T-ACATAATGAACAACAGTTA----TCTGA---AA-TG---A------CATT--TATTTTTT-AAGA-TAAT-ATTT-GTTGGCAAATAA----T--T----AATTT--AAGAATTCGATATTGTAG-CCATTGGACTTGGGTAT-CAG-TGGTTG-TTTT-AAAA-CAA-ACTTTAAACATAACTC-ATTG-GCAGAAAAC-ATT----TCTT--T----CCA---GATAGTACAGA-ATTTCTGTGTTCCAATTTCTGGA--TAGCTTTTGGAA-TT-GAG-ATT-TTGTTATTTTATC----AT-------AATATTATAA--ACTTTGGAAC-ACATTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGG-AATAAATGGTGTATATACTTT--TT------TTCCATATCAGTTCTCTTGACAGACA----TA-TTC---TT-A-A--AGAATT--AG--A-----T--AT--A-GTA-CTA--ATAATACTATTAT-ATTGCATTGTAC-T--ACACTTGCAAG---TCTAAATT---TTTGTGAAAAACATCTTGT-ATAATAAA
gi|20 : TTTTTTTTTTTTTTTTTTTTTTAATTAATATCTTATTTCTTTTTCT----------------AT-ATTCAT---CAATT-A--TAGTA--GCAAA---A-CATA-TATT-AA-TA-----T-TTT--CCCATATT------TGCCAAATA---TTCG-----CA-G--T-TTC----A-ACCCTCTC-a
gi|21 : CCAACAGA-AA----TGAT----TATGTGTAA-AATTTTAAACTGTAA-CCATTAAGCAGAATAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--A
gi|22 : ttgttacttcgccattttatatTTTTTTTTTTTTA-ATTA----TTTA-TTCTTTTTCTC---------------AT-ATTCATGTACAA-TAA--TA-TA--GCAAA--CATTACA-TCTTAAA-TA-----T-TTTTCCCC-TATT------TTCC--ACA---TTC-GC--AC
gi|24 : TT------AC-----A-C-AAACTGACAGGTCTTTCACCCAAAATAAC-A--T--TTG
gi|3 : TCAAAAATGTTTTTCCACAATGACC-ATAATTTT--TCAAACCTATAA-A-T------CACAATTTTGAATAGCAATATGCT-T--TTCAATGTTAAATTT-GAATTTCAAGTGAGATAA-----TAACCC-ATATATATTTGGTAGTT-T--G----TTC-T----GTT-TCAGACT-A-GAAAA---AAATAT-ATTGTTTT-G--TGTATAGGATCAAAAAATTT-AGCACT------TTGTT------TCTTCCTG-T-GAG-TGGGAGA----TCACC--AAATAAC-A--CAATTGGC-AAGT-T---AAATCCAACTCTCTC--TTT-GGTTTTTGCATATAT--ATATGTAAA-C-T-AA-AACT---A-CTCCATA-ATG-AC---ATA-AT-TTTTTCAC---A--AT----CGAT-A--AAA--ATAT-G-TT----GTATAGTTTC-GACATCTTGT-T-T-ACAAAAGGTACAGGAATCA-------G----AACTT---ACAAGATTGAT--T-TTCTTT-AA-A-TAGT-AATTAACAGGAAGA-A-----T--TCTAATATGA--AA-AATTCTGTATTGTAG-CCACTGAGCTGTAGAGT-CAG-TAGTTA-TTTTG-AAA-TAA-ACTTTAA--ATACATC-TTT---CA-CCAACAATTATTGTATT--C----TCT---GAG-G---AGATAATT-AGAGTTCCA---CCTGGA--AA--TT---GAA-TTAG-G-ATCAGTATAACTT--TC----AT--------TCA-TATG---ACTTTTGTAC-AT-TTTTCATATTATAGAATTGGTTCATAGTAAAATGG-TATAGAAGG--------------TT------TTAAATACTAGTTGTT--GAC--GCAATTCTA-TTTAAATT-AGGACACAGTTCATA--A-----TTGAAATA-GCA-CTT--ATAACGCT-TGATGGTTGC-TAATACATACACACTCAAAAGTTATCTA---T---CTTGTTTTAAA-ACATT-TAACAAt
gi|4 : aTTG--AATTGCAGCATATT-T--TTCCACAGAATATTTTAAACTTCAA-----ATGACATAGTAATCCTATA-AGGTTAGG---TTCTTTA----CCTCT----GCAATCAGACA-A-AT-AA---AGATGT-ATTGTTTA-ACATATATAAAATTATAAAGTTT-ATAGCT------TTGTTT-----AT-----AAT-AGAC--AGTGGAATTTCACCTAATATAAT-A--T--T-GAC-ACAT-T---AAAACCAACTCTTTC--TGA-CGATTTT-C-TGTAT--ATATGGAGA-C-TCAA-AT-C---A-TTCCACA-ATG-TT---TGG-GT-TTTAAAAC---ATGAA----G--T-A--AAG--ACATGG-AT----C-ATTGTCTC-AACATTA--T-G-T-ACAAAATCTACAACAGTCATTAGTTTT----AA-C---------ATTAAT--T-TTTTTC-AAG--TAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA-TCTAAACTGTAA-CCATTGAAC-AGAGAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--AT-ACTC-CTTGTACT-TGAA--ATA----TC-A--C----CCACTCTAT-ATGGAGATAATTCAGTCTTCCAC-TT---------GCCCATGGAAGTT-G-G-GATATTTCTTTTTTATTCAAAAT-------ATTG-TA-AATAATTTTAGAACAAT-TTTTCATGCAACAAAACAGGTTCAAAAAATACAGG-CATACATGGATTA-ATA--TT--TTGTTTAATTGAATGTC---TATC--AATAGATA----TACTTC---TT-A-A--ATATGT--TGACA-----TTGCA--A-G-A---A--ATAATGCTATTAT-ATTTCATTATTCAT---CACgacaaaaa
gi|5 : gttt--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTC----T-AGTCAAAAATATTTATCCAATTTGCCC-GAAGTTTG--TCAAATTTG-AA-A-TTTCAC--AAGATTT--TATTGCAACAAACT-TCTT-CAACCTTGTATTT-AAA-----AGAAAGATAATGTAATAATCCAGTA-ATATTAGG-AGTT-TT-G----TTT-T----GTT-TTGAACA-A--TTAA---AA-TGT-ATTGTTTG-G--TATAAAGAATTATAAAATTG-ATAACT---------------------------------GAGAGGCCTTTCACCCAATATAACCA--T--TTGTA-ATAT-T---AAT-CCAGTTCTTCG--TGA-TGTCTTT-C-TGTAA--ATAGGCATG-C-T-AAGAG-T---G-TTCCAAAAGTG-TT---ATA-AT-TTCAGAAC---A--AT----T--T-A--AAAACATAT-G-TT----G-GATGTTTC-AAC-TTCT-T-T---ACATAATG-ACA-CAGTTA----TCTG----AAATG---A------CATT--TATTTTTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA-----------------------ATTCTAT----TAGGCCATTGGACTTGGGTAT-CAGT-GGTTA-TTTTAAAAAACAA-ACTTTAA--ATAACTC-ATTG-GCA-GAAAC-ATT----TCTT--T----CCA---GAT-GTACAGATAATTCTGTGTTCCAA-TTTTGGATGTAGCTTTTGGAA-TG-A-A-ATTATTG--CATTTAagttttgataaagcttggatgagattgaaaaatatttt
gi|6 : A-ATTTATAA-TTTTA-AAA---------------ACAGCAAAAGAAAATAAT---------AA--A---TAGTA-TTC------------T-ATT-T-AGTTGATATACGAATCAGTCAAAAATATTTTTCAACCTCATCC-AGGCTTTA--TCAAAATTGTGC-A-TTTTAT--GTCATTG--AATTGCAGCATATTTC--T-CCACAAGATATTT-CAACTTCAA-----ATGACATAATAATCCTATA-AGGTTAGG---TTCTTTA----CTC-T----GCA-TCAAACA-A-ATTTT---TGATGT-ATTGTTTA-A--CATATAAAATTATAAAGTTT-ATAGCT------TTGTT------ATCA---A-T-AGAC--AGTGGGATTTCACCTAATATAAT-A--T--TTGAC-ACAT-TTAAAAAACCAACTCTTTC--TGA-AGTTTTT-C-TGTAT--AT------------------C---A-TTCCACA-ATG-TT---TGG-GT-TTTATCACATGA--AG----T--A-A--AGA-CATGTA---T----C-ATTGTCTC-AACATTAT-T-TGT-ACAAAATCTACAACAGTC--------------------------ATTAG-------TTTT-AACATTAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AATTCTAAAGTGCAA-CCATTGAACAGAAGAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--ATActgta
gi|7 : cacttccttctcgcagtggttacttgctacttgctgtgcagcTTA-C-TGTA----TATGTAGG-C-T-CA-TC-TC--A-CCTCACA-ATG-TTTGGATT-AT-ATCACAAC---A---T----T--T-AGTAAA-AATATGT-TT----C-ATTGTCTC-AACATTTT-C-T-TGACA-AATTTAGGACAATCG----TATGTTTTAA-T---------ATTAAT--C-TTTTTC-AGG--CAAT-ATCCAACAGTAAGA-AA----T--C----TATAT--AA-AATTATAAATTGCAA-CCATTGAACTGAAAAGT-CA----GTTG-TTTTG-AAA-CAA-ATTTTAA--ACACATC-TTGA-ACT-AAAAT-ATC----ACATACT----CCA---TATGGT---GTTAATTCAGTCTTCCAT-TTCCTTA--AAGC------AG-TT-G-G-GCTATC-CTCATTT-TC----ATTCAAAGAATTA-TAAATT-ATTTAGGATC-AC-TGTTCATGTGGCATAACATTTTCAAAAGATATAGG-TATACATGGATCAGGAA--TTCGTTAG----CTAAATCTC---TATC--AATAGATA------------------A--ACAGTT--TA--AGCGTTTTGAA--A--TAGCTGTTTTAATACTATTAT-ATTTCATTACACAT--AC-CTCATAG-------AGATTGTATGTGCGTAGAA-ATTT
gi|8 : ACCTAA--TAAG-A--TA-CTGCATACAT-T---AAAACCGATTCTTTC--TAA-ACTTTGT-C-TTTAT--CTGTGTAGG-A-T-CA-AC-TC--A-ATCCACA-ATG-TC---TGG-AT-TTTATCACATGA--AT----T-------AAA-TATATA---T----C-ATTGTCTC-AACATTTT-C-T-TGACAAAATATATAACAATCA----TC-------A-TGTTTT----ATTATTTAT-CTTTTC-CAGG-TAAT-ATCCAA-CAGCAAG-GA----T--TC---TATGTA-AA-AATTCTAAATTGCAA-CCATTTAACTAAAGAGT-CAGCT-CTTGCTTTTGAAAA-AAATATTTTG-----AACCCATTTT-GAA-TTAAA-ATA----TCAC--CTACTCCA---TAT-GAAT--TTAATCCAGTCTTCCAT-TTCCTTA--TAGCAGTTG-----T-G-GTATCATCATT--TTCAT------T-------ACTA-TAAAAT-ACTTTGGAAC-AC-TTTTCATGTGGCATAAatccaaggctaaaaaa
gi|9 : AACT------TTATC------AC-----A-CGAAACTGATAGGCCTTTCACCCAAAATAAT-AA-G--TTATA-TCATAT---AAAACCA-TTTTTTG--TGA-TGTCTTT-C-TGTAA--ATATGCATG-C-T-AA---------------GA-GTT-TT---AT---T-TTCAGAAC---A--AT----T--T-A--AAAACATAT-G-TT----GGATTGTTTC-AAC-TTCC-T-T---ACGTAATAAAGAACAGTCA----TCTG----AAATG---AC---ATTTAT--T-TCCTTT-AAGA-TAAT-ATTTTGTTGGCAGA-GA----C--T----TAT-T--AAGAATTTGACATTGTAG-CCACTGAACTTGGGTAT-CAGT-GGTTG-TTTT-AAAA-CAA-ACTTTAA---TAACTC-TTTC-GTA-CCAAC-ATT----ACTT--T----CCA---GAT-GTACAGATAATTATGTGTTCCAA-TATTGGA--TAGCTTTGAGAA-TG-A-G-ATTATTaattttccagaaatatagg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTTTCAGCCTCATCCAAGCTTTATCAAAACTGCATTTTAAG
Alignments
lowQualScore : 1111 4444444444444444 111 1111 11 11 1 11111 222222 22 1111 22222222222222 333333333333333333 1111111 222222222 11111111 111111 1 111 222222 2222 11 2 222222 1111 1111 111111 4444444444444444444444 11111 1 2222222222 11111 22222222222222 11 33333333333 111111111 666666666666666666666666 11 111111 333333333333 11 111111111111111 1 11 11111 22222222222222 11111 4444444444444444444444 111 11 555555555555555555555555555555555555555555555555555555555 111 2222 111 1
lowQualScore : 5 2222 5 7 4444444444444444 5 000 5 1111 5 55 0 33 1 5 5 5 22222 5 66 5 2 333333 66 888 00 66 5 5 2222 5 6 88888888888888 5 3 6 5 444444444444444444 0 4444444 0 555555555 999999 5 88888888 5 5 5 0 3 888888 1 5 77 3 1 7 5 5 888 1 888 1 000000 1 1 77 1111 00 0 99 2 5 1 555555 0 0000 5 0000 5 55 5 999999999 4 55 66 66 111111 5555555555555555555555 0 77 2 4 3 22222 1 0 3 666 44 44 3 3 3 888 1 2 3 3 3 4444444444 1 3 3 55555 3 666 55 666 55555555555555 55 22 33333333333 3 8 555555555 4 44 333333333333333333333333 1 33 4 88 4 444444 4 000000000000 8888 8 4 1 4 22 1 4 4 1 4 88 4 4 55 66 99 777 66 666666666666666 888 0 3333 88 11 55 777 444 5 5 5 5 55555 11 22222222222222 6 77777 6 6 1 2 1 1 1 1 1 99 1 5555555555555555555555 11 111 1 11 0 333333333333333333333333333333333333333333333333333333333 6 1 666 0 0 0000 7 777 0 0 6 7
lowQualScore : . .... . . ................ . ... . .... . .. . .. . . . . ..... . .. . . ...... .. ... .. .. . . .... . . .............. . . . . .................. . ....... . ......... ...... . ........ . . . . . ...... . . .. . . . . . ... . ... . ...... . . .. .... .. . .. . . . ...... . .... . .... . .. . ......... . .. .. .. ...... ...................... . .. . . . ..... . . . ... .. .. . . . ... . . . . . .......... . . . ..... . ... .. ... .............. .. .. ........... . . ......... . .. ........................ . .. . .. . ...... . ............ .... . . . . .. . . . . . .. . . .. .. .. ... .. ............... ... . .... .. .. .. ... ... . . . . ..... .. .............. . ..... . . . . . . . . . .. . ...................... .. ... . .. . ......................................................... . . ... . . .... . ... . . . .
lowQualScore : 7 1111 0 1 9999999999999999 7 000 7 6666 7 77 7 66 4 7 7 0 55555 0 99 0 0 111111 99 888 66 99 7 7 1111 7 7 88888888888888 0 4 5 0 777777777777777777 9 4444444 2 000000000 999999 0 11111111 0 0 0 4 2 444444 0 7 99 9 4 1 7 7 999 0 666 0 999999 3 0 44 6666 44 7 33 9 7 3 777777 1 6666 0 6666 0 44 0 999999999 4 33 11 33 555555 3333333333333333333333 5 99 3 2 3 33333 0 9 6 444 66 33 3 1 3 888 6 3 6 6 6 9999999999 0 6 6 66666 6 444 55 444 99999999999999 00 44 11111111111 6 8 222222222 9 77 000000000000000000000000 0 55 0 99 0 444444 0 333333333333 1111 0 0 0 0 11 4 0 0 4 0 77 0 0 55 00 55 000 44 555555555555555 888 0 9999 44 66 44 444 555 0 0 0 0 33333 66 88888888888888 7 22222 7 7 0 2 0 4 0 4 0 00 0 8888888888888888888888 66 222 0 00 8 666666666666666666666666666666666666666666666666666666666 7 0 555 2 2 0000 0 555 0 2 7 3
consensus : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATGT-ATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NG-TTTTT-C-TGTA--NATATGCANG-C-T-AA-AN-T---A-TTCCANAA-TG-TT-NTG-AT-T---TCANNAC---A---AT----T--T-A--AAA-CATAT-AGTT----N-ATTGTCT-CAACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TGA----ATTANTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGNNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGA--ANANTT--TG--A-----TTGNA--A-GTA-CTA--ATAATGCTATTAT-ATTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
Reference ( family-723 ) : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATGT-ATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NG-TTTTT-C-TGTA--NATATGCANG-C-T-AA-AN-T---A-TTCCANAA-TG-TT-ATG-AT-T---TCANNAC---A---AT----T--T-A--AAA-CATAT-AGTT----N-ATTGTCT-CAACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TGA----ATTANTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGNNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGA--ANANTT--TG--A-----TTGNA--A-GTA-CTA--ATAATGCTATTAT-ATTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
gi|1 : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-T-TT------TTCC--AAA---TTCGGC--ACA-GTAT-CTC----ACACCCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAA-TTGTA-ATA--------------TATAT-------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAA-ATTTATCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTTAC-CAAGATTT--AATTGCAACAAACT-C--T-CAACCTTGTATTT-GAAG--AAAGAAAGATAATGTAATAATCA-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TTGAACG-A-ATTAA---AAATGTTATTGTTTG-G--TATACAGAATTATAAAATTG-ATA------ACTTTATT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAATATAAC-A--T--TTGTA-ATAT-T---AAAACCAATTCTTCG--TGA-TG-TCTTT-C-TGTA--AATATGCATG-C-T-AA-AG-T---G-TTCCAAAG-TG-TTGATA-AT-T---TCAGAAC---A---AT----T--T-A--AAA-CATAT-AGTT----G-ATTGTTT-CGAC-TTCT-T-T-T-ACATAATGAACAACAGTTA----TCTG----AA-TGA----ATTATTT--TTTCTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA----T--T----TAT-T--AG-AA-TTCGATATTGTAG-CCATTGGACTTGGGTATCCAGTTGGTTG-TTTTAAAAA-CAA-ACTTTAA--ATAACTC-ATTG-GCA-GTAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATC---TGTTCCAA-TTTTGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTTATTTATC----AT-------ATCA-TATAAC-ACTTTGGAAC-AT-TTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGGAAATAATTGGTGTATACA--TT--TT------TTCCATATCAGTTCTT--GACAGACA----TA-TTC---TTAAGA--AAATTT--TG--A-----TTCTA--GTATA-CTA--ATAATACTATTAT-ATTGCATTGTACAT--ACACTGGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAGCAATAAA
gi|10 : TTG----TAT-T----GTT-TT--ACA-ACATTGATTTATATGA-ATTGTTTG-G--TATATAAAGTTTTGAAATTT-ATT------ACTTTGTTTG----AT-----T-C-TAAT--AATGGACAATCACCAAAAATAAT-A--T--TAAAATACAT-T---GAAACGAATTCAGTT--TGT-TG-TTTTC-T-TGTA--TATATGCA
gi|11 : tggtaggT-T--T-CAACATTATAATT-CATTTTTAAAAAATTTATC-----AATCC-A-----ATTAGG------TTTGGCATTTT-TCCACATT-TGAAACA-A-CT--A---AAATAT-ACTGTTTTTG--AATATAGTATTACAAAGTTT-ATAACTAAAACTTTGAT------------------AACTGAATGGTACTTCTCCAAAAATTAC-A--T--TTTTG-GCAT-T---AAAACCTATACGTTT--AGA-TG-TAGTA-T-TATA--TATATGTAGA-CTT-AG-AT-T---ATTTCCAAAA-TACTT-GTACATAT---TCA-CAC---A------------T-G--AAA-AATGT-A--TGCAAA-ATAGTTT-CAACATTtaatgcatacttggctgttatcataaagttaacctactactttgtcatagtacacagaaataatttgtacagtattttcagagttgtgtccactaaaagaacagatatcattatccacaagtttatttctttttcaaagtaacttttaacagggagaattc
gi|12 : gaatttttaaacagctatatattTTTTTT-ATTG----CTTATT-CTT---------------------AT-ATTCAT---CAA-T-AAATA-TATTG-AAA--CA-TACA-TATC-AG-TC-----TCTTT--TCT-TGTTGAA---CTTC--ACA---TTCG-C--ACC-GTAT-CTCTTGAACGCTCTTTC-AC-ACTACATTCATC---C--TATATAGTTATAG-TTGTATACA--------------TATAT-------ACAAAGT---------AC--T---T-GTACTTC--------AAATT-ATTCT-AA-TAATGTT----T-AGTCAAAAATATTTTTCCAATTTGCCCTAAAGTTTGTTTCGAATT---AATA-TTCCACGTATGATTT---ATTGCGACAAA
gi|13 : -TA-----T-TTT--TCT-TCTTCCTTCATTCC--ACAAATTTCG-C--ACA-GTAT-CTC----ACACTCTTCCAAC-ACT-T-TTCATC---CTGCATA-AATTATAG-TTG-A-AAA--------------TACAT-------ACATAGTA--------ACAAA---T-GTACTTC--------AA-TT-ATTCT---ATGATG-T----TCAGT
gi|14 : tttttttttttttttttttttttttttttttttttttttctctatttcatcaaataaatataacaaaacaataactattaatgttttttttttttttttgtttttttttttcTTTTTTCACTTTTTTTTTTT-ATTA----TTTA-TTCTTTTTCTCAT-------------AT-A---GC---CAA-T--------------AA--CA-TACAGTATT-AATTATTTTTT-TTT--TTC-TATT------TTCC---CA---TTCCGCTAACA-GTATCCTC----ACACTTTTTT-GCTATT-CTTTCATCCTGC-GCATA-ATCAGCAGTTTATATAAA--------------TATCC-------AAATAATAAAGGTAAAAC--AATTT-TTACTCCCTTTTCTAAA-TT-ATTCTAAAATGATG-T----TCAGTCAAAAATATTTATCCAAgc
gi|15 : cacaA--ATATGT--TG--ACA---TTGCA--A-G-A---A--ATAATGCTATTAT-ATTTCATTATTCAT---CAC
gi|16 : acaattccattctccccttagtggttacttgctgtacagcaatttataattgaacagaaaaaagaaaatgataaacataattctgtttagttgatatacatattagtcaaaaatatttttcaatctcatccaagctttatcaaaactAACTCTTTC--TGA-AGTTTTTT-C-TGTAATAATATGAAAGAC-T-CA-AA-TCTAA-TTCC-CAA-TG-TTCGTG-GG-T---TTATCAT---AC--ATGAAGT--A-A--AGA-CATGGAAATT----C-ATT-TCTCCAACATTAT-TAG-T-ACAAAATCTACAACAGTC-----------------------ATTATTT--TTTTTTCAAGT-CAATGATTCTG
gi|17 : TTTTTGTTTTGTTTT-ATTA----TTTATT-CTTTTTCTCATGATTGGTACGTATATGATTTAT---ATT-T-A--TA-TA--GCAAAA-CACTACA-TATT-AA-TA-----T-TTT--TCT-TATT------TTCC--ACA---TTC-GC--ACA-GTAT-CTC----ACACTCTTTC-A----T-C------C---T-GCATA-A-TTATAG-TTGTA---A--------------TACAT-------tg
gi|18 : ctgtaATAT-ATAGATTA-G--TATATAAAGTTATGAAATTA-ATA------ACTTTGTTTTTATAAC-----A-A-AAA--GAAA----TTTCA-CCAAGA-AAC-T--A--CTACACACAT-T---AAAAACGACTCTTTC--TGA-AG-TTTTT-
gi|19 : tactccgatgaaagagactttgtTA-ATT-ATAG-TTGTA-ATACATACATACATATATACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TTTATTCT-AAATGATGTT----C---TCAAAAATATTTTTCCAATTTGCCC-AAAATTTG--TCAAA---GAAA-A-TTTCA--CATGATTT--
gi|2 : TTTTT-ATCA----TTTATTCTTTTTCCTCA---------------T-ATTCAT---CAA-T-A--TA-TATAGCAAAAACA-TACA-TATT-AA-TA-----T-TT---CCA-TATT------TTCC--ACA---TTCG-C--ACATATAT-CTC----ACACTCCTTC-AC-CCT--------------GCATA-ATT-ATAG-TTGT-------------------TA----------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT-----CAGTCAAAAATATTTATCCAATTTGCCC-AAAGTTTA--TCAAATTTG-AA-AATTTCAC-AAAGATTT--AATTGCAACAAACTTC--T-CCACCTTGTATTT-GAA----AGAAAAGATAATGTAATAATCCAGTA-ATATTAGG-AG-T-TTTG----TTT-T----GTT-TTGAACACA-ATTAA---AAATGT-ATTGTTTG-G--TATACAGAATTATAAACTTGAATA------CATTTATT------AC-----A---AAACTGAGAGGCCTTTCACCCAATATAAC-ATGT--CTGTA-ATAT-T---AAAACCATTTCTTCCGTTGGTTG-CTCTT-C-TGTA--AATATGCATG-C-T-AAGAG-T---G-TTCCAAAG-TG-TT-ATA-AT-T---TCAAGAA---A---AT----T--TAA--AAA-CATAT--GTTG---G-ATTGTTT-CAAC-TTC--T-T-T-ACATAATGAACAACAGTTA----TCTGA---AA-TGA------CATTTA-TTTTTT-AAGA-TAAT-ATTT-GTTGGCAAATAA----T--T----AATTT--AAGAA-TTCGATATTGTAG-CCATTGGACTTGGGTAT-CAG-TGGTTG-TTTT-AAAA-CAA-ACTTTAAACATAACTC-ATTG-GCAGAAAAC-ATT----TCTT--T----CCA---GATAGTACAGA-ATTTCTGTGTTCCAATTTCTGGA--TAGCTTTTGGAA-TT-GAG-ATT-TTGTTATTTTATC----AT-------AATATTATAA--ACTTTGGAAC-ACATTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGG-AATAAATGGTGTATATACTTT--TT------TTCCATATCAGTTCTCTTGACAGACA----TA-TTC---TT-A-A--AGAATT--AG--A-----T--AT--A-GTA-CTA--ATAATACTATTAT-ATTGCATTGTAC-T--ACACTTGCAAG---TCTAAATT---TTTGTGAAAAACATCTTGT-ATAATAAA
gi|20 : TTTTTTTTTTTTTTTTTTTTTTAATTAATATCTTATTTCTTTTTCT----------------AT-ATTCAT---CAATT-A--TAGTA--GCAAA---A-CATA-TATT-AA-TA-----T-TTT--CCCATATT------TGCCAAATA---TTCG-----CA-G--T-TTC----A-ACCCTCTC-a
gi|21 : CCAACAGA-AA----TGAT----TATGTGTAA-AA-TTTTAAACTGTAA-CCATTAAGCAGAATAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--A
gi|22 : ttgttacttcgccattttatatTTTTTTTTTTTTA-ATTA----TTTA-TTCTTTTTCTC---------------AT-ATTCATGTACAA-TAA--TA-TA--GCAAA--CATTACA-TCTTAAA-TA-----T-TTTTCCCC-TATT------TTCC--ACA---TTC-GC--AC
gi|24 : TT------AC-----A-C-AAACTGACAGGTCTTTCACCCAAAATAAC-A--T--TTG
gi|3 : TCAAAAATGTTTTTCCACAATGACC-ATAATTTT--TCAAACCTATAA-A-T------CACAATTTTGAATAGCAATATGCT-T--TTCAATGTTAAATTT-GAATTTCAAGTGAGATAA-----TAACCC-ATATATATTTGGTAGTT-T--G----TTC-T----GTT-TCAGACT-A-GAAAA---AAATAT-ATTGTTTT-G--TGTATAGGATCAAAAAATTT-AGC------ACTTTGTT------TCTTCCTG-T-GAG-TGGGAGA----TCACC--AAATAAC-A--CAATTGGC-AAGT-T---AAATCCAACTCTCTC--TTT-GG-TTTTTGCATATA--TATATGTAAA-C-T-AA-AACT---A-CTCCATAA-TG-AC-ATA-AT-T---TTTTCAC---A---AT----CGAT-A--AAA--ATAT--GTT----GTATAGTTT-CGACATCTTGT-T-T-ACAAAAGGTACAGGAATCA-------G----AACTTACAAGATTGATT--TTCTTT-AA-A-TAGT-AATTAACAGGAAGA-A-----T--TCTAATATGA--AA-AA-TTCTGTATTGTAG-CCACTGAGCTGTAGAGT-CAG-TAGTTA-TTTTG-AAA-TAA-ACTTTAA--ATACATC-TTT---CA-CCAACAATTATTGTATT--C----TCT---GAG-G---AGATAATT-AGAGTTCCA---CCTGGA--AA--TT---GAA-TTAG-G-ATCAGTATAACTT--TC----AT--------TCA-TATG---ACTTTTGTAC-AT-TTTTCATATTATAGAATTGGTTCATAGTAAAATGG-TATAGAAGG--------------TT------TTAAATACTAGTTGTT--GAC--GCAATTCTA-TTTAAATT-AGGACACAGTTCATA--A-----TTGAAATA-GCA-CTT--ATAACGCT-TGATGGTTGC-TAATACATACACACTCAAAAGTTATCTA---T---CTTGTTTTAAA-ACATT-TAACAAt
gi|4 : aTTG--AATTGCAGCATATT-T--TTCCACAGAATATTTTAAACTTCAA-----ATGACATAGTAATCCTATA-AGGTTAGG---TTCTTTA----CCTCT----GCAATCAGACA-A-AT-AA---AGATGT-ATTGTTTA-ACATATATAAAATTATAAAGTTT-ATA------GCTTTGTTT-----AT-----AAT-AGAC--AGTGGAATTTCACCTAATATAAT-A--T--T-GAC-ACAT-T---AAAACCAACTCTTTC--TGA-CG-ATTTT-C-TGTA--TATATGGAGA-C-TCAA-AT-C---A-TTCCACAA-TG-TT-TGG-GT-T---TTAAAAC---ATG-AA----G--T-A--AAG--ACAT-GGAT----C-ATTGTCT-CAACATTA--T-G-T-ACAAAATCTACAACAGTCATTAGTTTT----AA-C------ATTAATT--TTTTTC-AAG--TAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA--TCTAAACTGTAA-CCATTGAAC-AGAGAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--AT-ACTC-CTTGTACT-TGAA--ATA----TC-A--C----CCACTCTAT-ATGGAGATAATTCAGTCTTCCAC-TT---------GCCCATGGAAGTT-G-G-GATATTTCTTTTTTATTCAAAAT-------ATTG-TA-AATAATTTTAGAACAAT-TTTTCATGCAACAAAACAGGTTCAAAAAATACAGG-CATACATGGATTA-ATA--TT--TTGTTTAATTGAATGTC---TATC--AATAGATA----TACTTC---TT-A-A--ATATGT--TGACA-----TTGCA--A-G-A---A--ATAATGCTATTAT-ATTTCATTATTCAT---CACgacaaaaa
gi|5 : gttt--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTC----T-AGTCAAAAATATTTATCCAATTTGCCC-GAAGTTTG--TCAAATTTG-AA-A-TTTCAC--AAGATTT--TATTGCAACAAACT-TCTT-CAACCTTGTATTT-AAA-----AGAAAGATAATGTAATAATCCAGTA-ATATTAGG-AGTT-TT-G----TTT-T----GTT-TTGAACA-A--TTAA---AA-TGT-ATTGTTTG-G--TATAAAGAATTATAAAATTG-ATA------ACT---------------------------GAGAGGCCTTTCACCCAATATAACCA--T--TTGTA-ATAT-T---AAT-CCAGTTCTTCG--TGA-TG-TCTTT-C-TGTA--AATAGGCATG-C-T-AAGAG-T---G-TTCCAAAAGTG-TT-ATA-AT-T---TCAGAAC---A---AT----T--T-A--AAAACATAT--GTT----G-GATGTTT-CAAC-TTCT-T-T---ACATAATG-ACA-CAGTTA----TCTG----AAATGA------CATTTA-TTTTTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA-----------------------A-TTCTAT----TAGGCCATTGGACTTGGGTAT-CAG-TGGTTA-TTTTAAAAAACAA-ACTTTAA--ATAACTC-ATTG-GCA-GAAAC-ATT----TCTT--T----CCA---GAT-GTACAGATAATTCTGTGTTCCAA-TTTTGGATGTAGCTTTTGGAA-TG-A-A-ATTATTG--CATTTAagttttgataaagcttggatgagattgaaaaatatttt
gi|6 : A-ATTTATAA-TTTTA-AAA---------------ACAGCAAAAGAAAATAAT---------AA--A---TAGTA-TTC------------T-ATT-T-AGTTGATATACGAATCAGTCAAAAATATTTTTCAACCTCATCC-AGGCTTTA--TCAAAATTGTGC-A-TTTTAT--GTCATTG--AATTGCAGCATATTTC--T-CCACAAGATATTT-CAACTTCAA-----ATGACATAATAATCCTATA-AGGTTAGG---TTCTTTA----CTC-T----GCA-TCAAACA-A-ATTTT---TGATGT-ATTGTTTA-A--CATATAAAATTATAAAGTTT-ATA------GCTTTGTT------ATCA---A-T-AGAC--AGTGGGATTTCACCTAATATAAT-A--T--TTGAC-ACAT-TTAAAAAACCAACTCTTTC--TGA-AG-TTTTT-C-TGTA--TAT------------------C---A-TTCCACAA-TG-TT-TGG-GT-T---TTATCACATGA---AG----T--A-A--AGA-CATGT-A--T----C-ATTGTCT-CAACATTAT-T-TGT-ACAAAATCTACAACAGTC-----------------------ATTAG------TTTT-AACATTAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA-TTCTAAAGTGCAA-CCATTGAACAGAAGAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--ATActgta
gi|7 : cacttccttctcgcagtggttacttgctacttgctgtgcagcTTA-C-TGTA----TATGTAGG-C-T-CA-TC-TC--A-CCTCACAA-TG-TT-TGG-AT-TATATCACAAC---A----T----T--T-AGTAAA-AATAT-GTTT----C-ATTGTCT-CAACATTTT-C-T-TGACA-AATTTAGGACAATCG----TATGTTTTAA-T------ATTAATC--TTTTTC-AGG--CAAT-ATCCAACAGTAAGA-AA----T--C----TATAT--AA-AA-TTATAAATTGCAA-CCATTGAACTGAAAAGT-CA----GTTG-TTTTG-AAA-CAA-ATTTTAA--ACACATC-TTGA-ACT-AAAAT-ATC----ACATACT----CCA---TATGGT---GTTAATTCAGTCTTCCAT-TTCCTTA--AAGC------AG-TT-G-G-GCTATC-CTCATTT-TC----ATTCAAAGAATTA-TAAATT-ATTTAGGATC-AC-TGTTCATGTGGCATAACATTTTCAAAAGATATAGG-TATACATGGATCAGGAA--TTCGTTAG----CTAAATCTC---TATC--AATAGATA------------------A--ACAGTT--TA--AGCGTTTTGAA--A--TAGCTGTTTTAATACTATTAT-ATTTCATTACACAT--AC-CTCATAG-------AGATTGTATGTGCGTAGAA-ATTT
gi|8 : ACCTAA--TAAG-A--TA-CTGCATACAT-T---AAAACCGATTCTTTC--TAA-AC-TTTGT-C-TTTA--TCTGTGTAGG-A-T-CA-AC-TC--A-ATCCACAA-TG-TC-TGG-AT-T---TTATCAC---ATGAAT----T-------AAA-TATAT-A--T----C-ATTGTCT-CAACATTTT-C-T-TGACAAAATATATAACAATCA----TC-------A-TGTTTT-ATTATTTATCTTTTC-CAGG-TAAT-ATCCAAC-AGCAAG-GA----T--TC---TATGT--AA-AAATTCTAAATTGCAA-CCATTTAACTAAAGAGT-CAG-CTCTTGCTTTTGAAAA-AAATATTTTG-----AACCCATTTT-GAA-TTAAA-ATA----TCAC--CTACTCCA---TAT-GAAT--TTAATCCAGTCTTCCAT-TTCCTTA--TAGCAGTTG-----T-G-GTATCATCATT--TTCAT------T-------ACTA-TAAAAT-ACTTTGGAAC-AC-TTTTCATGTGGCATAAatccaaggctaaaaaa
gi|9 : A------ACTTTATC------AC-----A-CGAAACTGATAGGCCTTTCACCCAAAATAAT-AA-G--TTATA-TCATAT---AAAACCA-TTTTTTG--TGA-TG-TCTTT-C-TGTA--AATATGCATG-C-T-AA---------------GAG-TT-TT-AT---T-T---TCAGAAC---A---AT----T--T-A--AAAACATAT--GTT----GGATTGTTT-CAAC-TTCC-T-T---ACGTAATAAAGAACAGTCA----TCTG----AAATGAC---ATTTATT--TCCTTT-AAGA-TAAT-ATTTTGTTGGCAGA-GA----C--T----TAT-T--AAGAA-TTTGACATTGTAG-CCACTGAACTTGGGTAT-CAG-TGGTTG-TTTT-AAAA-CAA-ACTTTAA---TAACTC-TTTC-GTA-CCAAC-ATT----ACTT--T----CCA---GAT-GTACAGATAATTATGTGTTCCAA-TATTGGA--TAGCTTTGAGAA-TG-A-G-ATTATTaattttccagaaatatagg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTTTCAGCCTCATCCAAGCTTTATCAAAACTGCATTTTAAG
Alignments
lowQualScore : 1111 4444444444444444 111 1111 11 11 1 11111 222222 22 1111 22222222222222 333333333333333333 1111111 222222222 11111111 111111 1 111 222222 2222 11 2 222222 1111 1111 111111 4444444444444444444444 11111 1 2222222222 111111 22222222222222 33333333333 111111111 666666666666666666666666 11 111111 333333333333 11 1111 1111111 1 11 11111 22222222222222 11 4444444444444444444444 111 11 55555555555555555555555555555555555555555555555555555555 111 2222 111 1
lowQualScore : 5 2222 5 7 4444444444444444 5 000 5 1111 5 55 0 33 1 5 5 5 22222 5 66 5 2 333333 66 888 00 66 5 5 2222 5 6 88888888888888 5 3 6 5 444444444444444444 0 4444444 0 555555555 999999 5 88888888 5 5 5 0 3 888888 1 5 77 3 1 7 5 5 888 1 888 1 000000 1 1 77 1111 00 0 99 2 5 1 555555 0 0000 5 0000 5 55 5 999999999 4 55 66 66 111111 5555555555555555555555 0 77 2 4 3 22222 1 0 3 666 44 44 6 3 888 1 2 3 3 3 2222222222 2 3 3 000000 3 666 55 666 99999999999999 55 88 33333333333 3 8 555555555 4 44 333333333333333333333333 1 33 4 88 4 444444 4 000000000000 8888 8 4 1 4 22 1 4 4 1 4 33 4 4 55 66 99 777 1 0000 5 3 5555555 888 0 3333 88 11 55 777 77 5 5 5 5 5 55555 5 22222222222222 6 7 66 6 6 1 2 1 1 1 1 1 99 1 5555555555555555555555 11 111 1 11 33333333333333333333333333333333333333333333333333333333 6 1 666 0 0 0000 7 777 0 0 6 7
lowQualScore : . .... . . ................ . ... . .... . .. . .. . . . . ..... . .. . . ...... .. ... .. .. . . .... . . .............. . . . . .................. . ....... . ......... ...... . ........ . . . . . ...... . . .. . . . . . ... . ... . ...... . . .. .... .. . .. . . . ...... . .... . .... . .. . ......... . .. .. .. ...... ...................... . .. . . . ..... . . . ... .. .. . . ... . . . . . .......... . . . ...... . ... .. ... .............. .. .. ........... . . ......... . .. ........................ . .. . .. . ...... . ............ .... . . . . .. . . . . . .. . . .. .. .. ... . .... . . ....... ... . .... .. .. .. ... .. . . . . . ..... . .............. . . .. . . . . . . . . . .. . ...................... .. ... . .. ........................................................ . . ... . . .... . ... . . . .
lowQualScore : 7 1111 0 1 9999999999999999 7 000 7 6666 7 77 7 66 4 7 7 0 55555 0 99 0 0 111111 99 888 66 99 7 7 1111 7 7 88888888888888 0 4 5 0 777777777777777777 9 4444444 2 000000000 999999 0 11111111 0 0 0 4 2 444444 0 7 99 9 4 1 7 7 999 0 666 0 999999 3 0 44 6666 44 7 33 9 7 3 777777 1 6666 0 6666 0 44 0 999999999 4 33 11 33 555555 3333333333333333333333 5 99 3 2 3 33333 0 9 6 444 66 33 2 3 888 6 3 6 6 6 8888888888 3 6 6 444444 6 444 55 444 55555555555555 00 77 11111111111 6 8 222222222 9 77 000000000000000000000000 0 55 0 99 0 444444 0 333333333333 1111 0 0 0 0 11 4 0 0 4 0 88 0 0 55 00 55 000 4 6666 0 6 5555555 888 0 9999 44 66 44 444 11 6 0 0 0 0 33333 0 88888888888888 7 8 55 7 7 0 2 0 4 0 4 0 00 0 8888888888888888888888 66 222 0 00 66666666666666666666666666666666666666666666666666666666 7 0 555 2 2 0000 0 555 0 2 7 3
consensus : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATGT-ATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NGTTTTT-C-TGTAN--ATATGCANG-C-T-AA-AN-T---A-TTCCACAA-TG-TT-N-TG-AT-T---TCANNAC---A---AT----T--T-A--AAA-CATATAG-TT----N-ATTGTCTC-AACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TGA----ATTANTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAACA----TT-TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGNNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGAANAN--TT--TG--A-----TTGNAA--GTA-CTA--ATAATGCTATTATA-TTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
Reference ( family-723 ) : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATGT-ATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NGTTTTT-C-TGTAN--ATATGCANG-C-T-AA-AN-T---A-TTCCANAA-TG-TT-N-TG-AT-T---TCANNAC---A---AT----T--T-A--AAA-CATATAG-TT----N-ATTGTCTC-AACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TGA----ATTANTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAACA----TT-TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGNNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGAANAN--TT--TG--A-----TTGNAA--GTA-CTA--ATAATGCTATTATA-TTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
gi|1 : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-T-TT------TTCC--AAA---TTCGGC--ACA-GTAT-CTC----ACACCCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAA-TTGTA-ATA--------------TATAT-------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAA-ATTTATCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTTAC-CAAGATTT--AATTGCAACAAACT-C--T-CAACCTTGTATTT-GAAG--AAAGAAAGATAATGTAATAATCA-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TTGAACG-A-ATTAA---AAATGTTATTGTTTG-G--TATACAGAATTATAAAATTG-ATA------ACTTTATT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAATATAAC-A--T--TTGTA-ATAT-T---AAAACCAATTCTTCG--TGA-TGTCTTT-C-TGTAA--ATATGCATG-C-T-AA-AG-T---G-TTCCAAAG-TG-TTGA-TA-AT-T---TCAGAAC---A---AT----T--T-A--AAA-CATATAG-TT----G-ATTGTTTC-GAC-TTCT-T-T-T-ACATAATGAACAACAGTTA----TCTG----AA-TGA----ATTATTT--TTTCTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA----T--T----TAT-T--AG-AA-TTCGATATTGTAG-CCATTGGACTTGGGTATCCAGTTGGTTG-TTTTAAAAA-CAA-ACTTTAA--ATAACTC-ATTG-GCA-GTAACA----TT-TCTT--C----CCA---GAT-GTACAGATAATC---TGTTCCAA-TTTTGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTTATTTATC----AT-------ATCA-TATAAC-ACTTTGGAAC-AT-TTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGGAAATAATTGGTGTATACA--TT--TT------TTCCATATCAGTTCTT--GACAGACA----TA-TTC---TTAAGAAAAT--TT--TG--A-----TTCTAGT-ATA-CTA--ATAATACTATTATA-TTGCATTGTACAT--ACACTGGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAGCAATAAA
gi|10 : TTG----TAT-T----GTT-TT--ACA-ACATTGATTTATATGA-ATTGTTTG-G--TATATAAAGTTTTGAAATTT-ATT------ACTTTGTTTG----AT-----T-C-TAAT--AATGGACAATCACCAAAAATAAT-A--T--TAAAATACAT-T---GAAACGAATTCAGTT--TGT-TGTTTTC-T-TGTAT--ATATGCA
gi|11 : tggtaggT-T--T-CAACATTATAATT-CATTTTTAAAAAATTTATC-----AATCC-A-----ATTAGG------TTTGGCATTTT-TCCACATT-TGAAACA-A-CT--A---AAATAT-ACTGTTTTTG--AATATAGTATTACAAAGTTT-ATAACTAAAACTTTGAT------------------AACTGAATGGTACTTCTCCAAAAATTAC-A--T--TTTTG-GCAT-T---AAAACCTATACGTTT--AGA-TGTAGTA-T-TATAT--ATATGTAGA-CTT-AG-AT-T---ATTTCCAAAA-TACTT-G-TACATAT---TCA-CAC---A------------T-G--AAA-AATGTA---TGCAAA-ATAGTTTC-AACATTtaatgcatacttggctgttatcataaagttaacctactactttgtcatagtacacagaaataatttgtacagtattttcagagttgtgtccactaaaagaacagatatcattatccacaagtttatttctttttcaaagtaacttttaacagggagaattc
gi|12 : gaatttttaaacagctatatattTTTTTT-ATTG----CTTATT-CTT---------------------AT-ATTCAT---CAA-T-AAATA-TATTG-AAA--CA-TACA-TATC-AG-TC-----TCTTT--TCT-TGTTGAA---CTTC--ACA---TTCG-C--ACC-GTAT-CTCTTGAACGCTCTTTC-AC-ACTACATTCATC---C--TATATAGTTATAG-TTGTATACA--------------TATAT-------ACAAAGT---------AC--T---T-GTACTTC--------AAATT-ATTCT-AA-TAATGTT----T-AGTCAAAAATATTTTTCCAATTTGCCCTAAAGTTTGTTTCGAATT---AATA-TTCCACGTATGATTT---ATTGCGACAAA
gi|13 : -TA-----T-TTT--TCT-TCTTCCTTCATTCC--ACAAATTTCG-C--ACA-GTAT-CTC----ACACTCTTCCAAC-ACT-T-TTCATC---CTGCATA-AATTATAG-TTG-A-AAA--------------TACAT-------ACATAGTA--------ACAAA---T-GTACTTC--------AA-TT-ATTCT---ATGATG-T----TCAGT
gi|14 : tttttttttttttttttttttttttttttttttttttttctctatttcatcaaataaatataacaaaacaataactattaatgttttttttttttttttgtttttttttttcTTTTTTCACTTTTTTTTTTT-ATTA----TTTA-TTCTTTTTCTCAT-------------AT-A---GC---CAA-T--------------AA--CA-TACAGTATT-AATTATTTTTT-TTT--TTC-TATT------TTCC---CA---TTCCGCTAACA-GTATCCTC----ACACTTTTTT-GCTATT-CTTTCATCCTGC-GCATA-ATCAGCAGTTTATATAAA--------------TATCC-------AAATAATAAAGGTAAAAC--AATTT-TTACTCCCTTTTCTAAA-TT-ATTCTAAAATGATG-T----TCAGTCAAAAATATTTATCCAAgc
gi|15 : cacaAATAT--GT--TG--ACA---TTGCAA--G-A---A--ATAATGCTATTATA-TTTCATTATTCAT---CAC
gi|16 : acaattccattctccccttagtggttacttgctgtacagcaatttataattgaacagaaaaaagaaaatgataaacataattctgtttagttgatatacatattagtcaaaaatatttttcaatctcatccaagctttatcaaaactAACTCTTTC--TGA-AGTTTTTTC-TGTAATAATATGAAAGAC-T-CA-AA-TCTAA-TTCC-CAA-TG-TT-CGTG-GG-T---TTATCAT---AC--ATGAAGT--A-A--AGA-CATGGAAATT----C-ATT-TCTCCAACATTAT-TAG-T-ACAAAATCTACAACAGTC-----------------------ATTATTT--TTTTTTCAAGT-CAATGATTCTG
gi|17 : TTTTTGTTTTGTTTT-ATTA----TTTATT-CTTTTTCTCATGATTGGTACGTATATGATTTAT---ATT-T-A--TA-TA--GCAAAA-CACTACA-TATT-AA-TA-----T-TTT--TCT-TATT------TTCC--ACA---TTC-GC--ACA-GTAT-CTC----ACACTCTTTC-A----T-C------C---T-GCATA-A-TTATAG-TTGTA---A--------------TACAT-------tg
gi|18 : ctgtaATAT-ATAGATTA-G--TATATAAAGTTATGAAATTA-ATA------ACTTTGTTTTTATAAC-----A-A-AAA--GAAA----TTTCA-CCAAGA-AAC-T--A--CTACACACAT-T---AAAAACGACTCTTTC--TGA-AGTTTTT-
gi|19 : tactccgatgaaagagactttgtTA-ATT-ATAG-TTGTA-ATACATACATACATATATACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TTTATTCT-AAATGATGTT----C---TCAAAAATATTTTTCCAATTTGCCC-AAAATTTG--TCAAA---GAAA-A-TTTCA--CATGATTT--
gi|2 : TTTTT-ATCA----TTTATTCTTTTTCCTCA---------------T-ATTCAT---CAA-T-A--TA-TATAGCAAAAACA-TACA-TATT-AA-TA-----T-TT---CCA-TATT------TTCC--ACA---TTCG-C--ACATATAT-CTC----ACACTCCTTC-AC-CCT--------------GCATA-ATT-ATAG-TTGT-------------------TA----------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT-----CAGTCAAAAATATTTATCCAATTTGCCC-AAAGTTTA--TCAAATTTG-AA-AATTTCAC-AAAGATTT--AATTGCAACAAACTTC--T-CCACCTTGTATTT-GAA----AGAAAAGATAATGTAATAATCCAGTA-ATATTAGG-AG-T-TTTG----TTT-T----GTT-TTGAACACA-ATTAA---AAATGT-ATTGTTTG-G--TATACAGAATTATAAACTTGAATA------CATTTATT------AC-----A---AAACTGAGAGGCCTTTCACCCAATATAAC-ATGT--CTGTA-ATAT-T---AAAACCATTTCTTCCGTTGGTTGCTCTT-C-TGTAA--ATATGCATG-C-T-AAGAG-T---G-TTCCAAAG-TG-TT-A-TA-AT-T---TCAAGAA---A---AT----T--TAA--AAA-CATAT-G-TTG---G-ATTGTTTC-AAC-TTC--T-T-T-ACATAATGAACAACAGTTA----TCTGA---AA-TGA------CATTTA-TTTTTT-AAGA-TAAT-ATTT-GTTGGCAAATAA----T--T----AATTT--AAGAA-TTCGATATTGTAG-CCATTGGACTTGGGTAT-CAG-TGGTTG-TTTT-AAAA-CAA-ACTTTAAACATAACTC-ATTG-GCAGAAAACA----TT-TCTT--T----CCA---GATAGTACAGA-ATTTCTGTGTTCCAATTTCTGGA--TAGCTTTTGGAA-TT-GAG-ATT-TTGTTATTTTATC----AT-------AATATTATAA--ACTTTGGAAC-ACATTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGG-AATAAATGGTGTATATACTTT--TT------TTCCATATCAGTTCTCTTGACAGACA----TA-TTC---TT-A-AAGAA--TT--AG--A-----T--ATA--GTA-CTA--ATAATACTATTATA-TTGCATTGTAC-T--ACACTTGCAAG---TCTAAATT---TTTGTGAAAAACATCTTGT-ATAATAAA
gi|20 : TTTTTTTTTTTTTTTTTTTTTTAATTAATATCTTATTTCTTTTTCT----------------AT-ATTCAT---CAATT-A--TAGTA--GCAAA---A-CATA-TATT-AA-TA-----T-TTT--CCCATATT------TGCCAAATA---TTCG-----CA-G--T-TTC----A-ACCCTCTC-a
gi|21 : CCAACAGA-AA----TGAT----TATGTGTAA-AA-TTTTAAACTGTAA-CCATTAAGCAGAATAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--A
gi|22 : ttgttacttcgccattttatatTTTTTTTTTTTTA-ATTA----TTTA-TTCTTTTTCTC---------------AT-ATTCATGTACAA-TAA--TA-TA--GCAAA--CATTACA-TCTTAAA-TA-----T-TTTTCCCC-TATT------TTCC--ACA---TTC-GC--AC
gi|24 : TT------AC-----A-C-AAACTGACAGGTCTTTCACCCAAAATAAC-A--T--TTG
gi|3 : TCAAAAATGTTTTTCCACAATGACC-ATAATTTT--TCAAACCTATAA-A-T------CACAATTTTGAATAGCAATATGCT-T--TTCAATGTTAAATTT-GAATTTCAAGTGAGATAA-----TAACCC-ATATATATTTGGTAGTT-T--G----TTC-T----GTT-TCAGACT-A-GAAAA---AAATAT-ATTGTTTT-G--TGTATAGGATCAAAAAATTT-AGC------ACTTTGTT------TCTTCCTG-T-GAG-TGGGAGA----TCACC--AAATAAC-A--CAATTGGC-AAGT-T---AAATCCAACTCTCTC--TTT-GGTTTTTGCATATAT--ATATGTAAA-C-T-AA-AACT---A-CTCCATAA-TG-AC-A-TA-AT-T---TTTTCAC---A---AT----CGAT-A--AAA--ATAT-G-TT----GTATAGTTTC-GACATCTTGT-T-T-ACAAAAGGTACAGGAATCA-------G----AACTTACAAGATTGATT--TTCTTT-AA-A-TAGT-AATTAACAGGAAGA-A-----T--TCTAATATGA--AA-AA-TTCTGTATTGTAG-CCACTGAGCTGTAGAGT-CAG-TAGTTA-TTTTGAAA--TAA-ACTTTAA--ATACATC-TTT---CA-CCAACAATTATTGTATT--C----TCT---GAG-G---AGATAATT-AGAGTTCCA---CCTGGA--AA----TTG-AA-TTAG-G-ATCAGTATAACTTT--C----AT--------TCA-TATGA---CTTTTGTAC-AT-TTTTCATATTATAGAATTGGTTCATAGTAAAATGG-TATAGAAGG--------------TT------TTAAATACTAGTTGTT--GACG--CAATTCTA-TTTAAATT-AGGACACAGTTCATA--A-----TTGAAATAGCA-CTT--ATAACGCT-TGATGGTTGC-TAATACATACACACTCAAAAGTTATCTA---T---CTTGTTTTAAA-ACATT-TAACAAt
gi|4 : aTTG--AATTGCAGCATATT-T--TTCCACAGAATATTTTAAACTTCAA-----ATGACATAGTAATCCTATA-AGGTTAGG---TTCTTTA----CCTCT----GCAATCAGACA-A-AT-AA---AGATGT-ATTGTTTA-ACATATATAAAATTATAAAGTTT-ATA------GCTTTGTTT-----AT-----AAT-AGAC--AGTGGAATTTCACCTAATATAAT-A--T--T-GAC-ACAT-T---AAAACCAACTCTTTC--TGA-CGATTTT-C-TGTAT--ATATGGAGA-C-TCAA-AT-C---A-TTCCACAA-TG-TT-T-GG-GT-T---TTAAAAC---ATG-AA----G--T-A--AAG--ACATGG-AT----C-ATTGTCTC-AACATTA--T-G-T-ACAAAATCTACAACAGTCATTAGTTTT----AA-C------ATTAATT--TTTTTC-AAG--TAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA--TCTAAACTGTAA-CCATTGAAC-AGAGAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--AT-ACTC-CTTGTACT-TGAA-A----TA-TC-A--C----CCACTCTAT-ATGGAGATAATTCAGTCTTCCAC-TT---------GCCCATGGAAGTT-G-G-GATATTTCTTTTTTATTCAAAAT-------ATTG-TA-AATAATTTTAGAACAAT-TTTTCATGCAACAAAACAGGTTCAAAAAATACAGG-CATACATGGATTA-ATA--TT--TTGTTTAATTGAATGTC---TATC--AATAGATA----TACTTC---TT-A-AATAT--GT--TGACA-----TTGCAA--G-A---A--ATAATGCTATTATA-TTTCATTATTCAT---CACgacaaaaa
gi|5 : gttt--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTC----T-AGTCAAAAATATTTATCCAATTTGCCC-GAAGTTTG--TCAAATTTG-AA-A-TTTCAC--AAGATTT--TATTGCAACAAACT-TCTT-CAACCTTGTATTT-AAA-----AGAAAGATAATGTAATAATCCAGTA-ATATTAGG-AGTT-TT-G----TTT-T----GTT-TTGAACA-A--TTAA---AA-TGT-ATTGTTTG-G--TATAAAGAATTATAAAATTG-ATA------ACT---------------------------GAGAGGCCTTTCACCCAATATAACCA--T--TTGTA-ATAT-T---AAT-CCAGTTCTTCG--TGA-TGTCTTT-C-TGTAA--ATAGGCATG-C-T-AAGAG-T---G-TTCCAAAAGTG-TT-A-TA-AT-T---TCAGAAC---A---AT----T--T-A--AAAACATAT-G-TT----G-GATGTTTC-AAC-TTCT-T-T---ACATAATG-ACA-CAGTTA----TCTG----AAATGA------CATTTA-TTTTTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA-----------------------A-TTCTAT----TAGGCCATTGGACTTGGGTAT-CAG-TGGTTA-TTTTAAAAAACAA-ACTTTAA--ATAACTC-ATTG-GCA-GAAACA----TT-TCTT--T----CCA---GAT-GTACAGATAATTCTGTGTTCCAA-TTTTGGATGTAGCTTTTGGAA-TG-A-A-ATTATTG--CATTTAagttttgataaagcttggatgagattgaaaaatatttt
gi|6 : A-ATTTATAA-TTTTA-AAA---------------ACAGCAAAAGAAAATAAT---------AA--A---TAGTA-TTC------------T-ATT-T-AGTTGATATACGAATCAGTCAAAAATATTTTTCAACCTCATCC-AGGCTTTA--TCAAAATTGTGC-A-TTTTAT--GTCATTG--AATTGCAGCATATTTC--T-CCACAAGATATTT-CAACTTCAA-----ATGACATAATAATCCTATA-AGGTTAGG---TTCTTTA----CTC-T----GCA-TCAAACA-A-ATTTT---TGATGT-ATTGTTTA-A--CATATAAAATTATAAAGTTT-ATA------GCTTTGTT------ATCA---A-T-AGAC--AGTGGGATTTCACCTAATATAAT-A--T--TTGAC-ACAT-TTAAAAAACCAACTCTTTC--TGA-AGTTTTT-C-TGTAT--AT------------------C---A-TTCCACAA-TG-TT-T-GG-GT-T---TTATCACATGA---AG----T--A-A--AGA-CATGTA---T----C-ATTGTCTC-AACATTAT-T-TGT-ACAAAATCTACAACAGTC-----------------------ATTAG------TTTT-AACATTAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA-TTCTAAAGTGCAA-CCATTGAACAGAAGAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--ATActgta
gi|7 : cacttccttctcgcagtggttacttgctacttgctgtgcagcTTA-C-TGTA----TATGTAGG-C-T-CA-TC-TC--A-CCTCACAA-TG-TT-T-GG-AT-TATATCACAAC---A----T----T--T-AGTAAA-AATATGT-TT----C-ATTGTCTC-AACATTTT-C-T-TGACA-AATTTAGGACAATCG----TATGTTTTAA-T------ATTAATC--TTTTTC-AGG--CAAT-ATCCAACAGTAAGA-AA----T--C----TATAT--AA-AA-TTATAAATTGCAA-CCATTGAACTGAAAAGT-CA----GTTG-TTTTG-AAA-CAA-ATTTTAA--ACACATC-TTGA-ACT-AAAATA----TC-ACATACT----CCA---TATGGT---GTTAATTCAGTCTTCCAT-TTCCTTA--AAGC------AG-TT-G-G-GCTATC-CTCATTT-TC----ATTCAAAGAATTA-TAAATT-ATTTAGGATC-AC-TGTTCATGTGGCATAACATTTTCAAAAGATATAGG-TATACATGGATCAGGAA--TTCGTTAG----CTAAATCTC---TATC--AATAGATA------------------AACAG--TT--TA--AGCGTTTTGAAA---TAGCTGTTTTAATACTATTATA-TTTCATTACACAT--AC-CTCATAG-------AGATTGTATGTGCGTAGAA-ATTT
gi|8 : ACCTAA--TAAG-A--TA-CTGCATACAT-T---AAAACCGATTCTTTC--TAA-ACTTTGT-C-TTTAT--CTGTGTAGG-A-T-CA-AC-TC--A-ATCCACAA-TG-TC-T-GG-AT-T---TTATCAC---ATGAAT----T-------AAA-TATATA---T----C-ATTGTCTC-AACATTTT-C-T-TGACAAAATATATAACAATCA----TC-------A-TGTTTT-ATTATTTATCTTTTC-CAGG-TAAT-ATCCAAC-AGCAAG-GA----T--TC---TATGT--AA-AAATTCTAAATTGCAA-CCATTTAACTAAAGAGT-CAG-CTCTTGCTTTTGAAAA-AAATATTTTG-----AACCCATTTT-GAA-TTAAAA----TA-TCAC--CTACTCCA---TAT-GAAT--TTAATCCAGTCTTCCAT-TTCCTTA--TAGCAGTTG-----T-G-GTATCATCATT--TTCAT------T-------ACTA-TAAAAT-ACTTTGGAAC-AC-TTTTCATGTGGCATAAatccaaggctaaaaaa
gi|9 : A------ACTTTATC------AC-----A-CGAAACTGATAGGCCTTTCACCCAAAATAAT-AA-G--TTATA-TCATAT---AAAACCA-TTTTTTG--TGA-TGTCTTT-C-TGTAA--ATATGCATG-C-T-AA-GA-----------------G-TT-T-TA-TT-T---TCAGAAC---A---AT----T--TAA--AAA-CATAT-G-TTG---G-ATTGTTTC-AAC-TTC--C-T-T-ACGTAATAAAGAACAGTCA----TCTGA---AA-TGAC---ATTTATT--TCCTTT-AAGA-TAAT-ATTTTGTTGGCAGA-GA----C--T----TAT-T--AAGAA-TTTGACATTGTAG-CCACTGAACTTGGGTAT-CAG-TGGTTG-TTTT-AAAA-CAA-ACTTT-A--ATAACTC-TTTC-GTA-CCAACA----TT-ACTT--T----CCA---GAT-GTACAGATAATTATGTGTTCCAA-TATTGGA--TAGCTTTGAGAA-TG-A-G-ATTATTaattttccagaaatatagg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTTTCAGCCTCATCCAAGCTTTATCAAAACTGCATTTTAAG
Alignments
lowQualScore : 1111 4444444444444444 111 1111 11 11 1 11111 222222 22 1111 22222222222222 333333333333333333 1111111 222222222 11111111 111111 1 111 222222 2222 11 2 222222 1111 1111 111111 4444444444444444444444 11111 1 2222222222 11111 22222222222222 33333333333 111111111 666666666666666666666666 11 111111 333333333333 11 111111111111111 1 11 11111 22222222222222 11111 4444444444444444444444 111 11 555555555555555555555555555555555555555555555555555555555 111 2222 111 1
lowQualScore : 8 5 2222 5 7 4444444444444444 5 000 5 1111 5 55 0 33 1 5 5 5 22222 5 66 5 2 333333 66 888 00 66 5 5 2222 5 6 88888888888888 5 3 6 5 444444444444444444 0 4444444 0 555555555 999999 5 88888888 5 5 5 0 3 888888 1 5 77 3 1 7 5 5 888 1 888 1 000000 1 1 77 1111 00 0 99 2 5 1 555555 0 0000 5 0000 5 55 5 999999999 4 55 66 66 111111 5555555555555555555555 0 77 2 4 3 22222 1 0 3 666 44 44 3 3 3 888 1 2 3 3 3 2222222222 2 3 3 00000 3 666 55 666 99999999999999 55 88 33333333333 3 8 555555555 4 44 333333333333333333333333 1 33 4 88 4 444444 4 000000000000 8888 8 4 1 4 22 1 4 4 1 4 88 4 4 55 66 99 777 66 666666666666666 888 0 3333 88 11 55 777 444 5 5 5 5 55555 11 22222222222222 6 77777 6 6 1 2 1 1 1 1 1 99 1 5555555555555555555555 11 111 1 11 0 333333333333333333333333333333333333333333333333333333333 6 1 666 0 0 0000 7 777 0 0 6 7
lowQualScore : . . .... . . ................ . ... . .... . .. . .. . . . . ..... . .. . . ...... .. ... .. .. . . .... . . .............. . . . . .................. . ....... . ......... ...... . ........ . . . . . ...... . . .. . . . . . ... . ... . ...... . . .. .... .. . .. . . . ...... . .... . .... . .. . ......... . .. .. .. ...... ...................... . .. . . . ..... . . . ... .. .. . . . ... . . . . . .......... . . . ..... . ... .. ... .............. .. .. ........... . . ......... . .. ........................ . .. . .. . ...... . ............ .... . . . . .. . . . . . .. . . .. .. .. ... .. ............... ... . .... .. .. .. ... ... . . . . ..... .. .............. . ..... . . . . . . . . . .. . ...................... .. ... . .. . ......................................................... . . ... . . .... . ... . . . .
lowQualScore : 0 7 1111 0 1 9999999999999999 7 000 7 6666 7 77 7 66 4 7 7 0 55555 0 99 0 0 111111 99 888 66 99 7 7 1111 7 7 88888888888888 0 4 5 0 777777777777777777 9 4444444 2 000000000 999999 0 11111111 0 0 0 4 2 444444 0 7 99 9 4 1 7 7 999 0 666 0 999999 3 0 44 6666 44 7 33 9 7 3 777777 1 6666 0 6666 0 44 0 999999999 4 33 11 33 555555 3333333333333333333333 5 99 3 2 3 33333 0 9 6 444 66 33 3 1 3 888 6 3 6 6 6 8888888888 8 6 6 44444 6 444 55 444 55555555555555 00 77 11111111111 6 8 222222222 9 77 000000000000000000000000 0 55 0 99 0 444444 0 333333333333 1111 0 0 0 0 11 4 0 0 4 0 77 0 0 55 00 55 000 44 555555555555555 888 0 9999 44 66 44 444 555 0 0 0 0 33333 66 88888888888888 7 22222 7 7 0 2 0 4 0 4 0 00 0 8888888888888888888888 66 222 0 00 8 666666666666666666666666666666666666666666666666666666666 7 0 555 2 2 0000 0 555 0 2 7 3
consensus : TTTTTTTTTT-TTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATG-TATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NG-TTTTT-C-TGTA--NATATGCANG-C-T-AA-AN-T---A-TTCCACAA-TG-TT-NTG-AT-T---TCANNAC---A---AT----T--T-A--AAA-CATAT-AGTT----N-ATTGTCT-CAACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TGA----ATTANTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGNNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGA--ANANTT--TG--A-----TTGNA--A-GTA-CTA--ATAATGCTATTAT-ATTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
Reference ( family-723 ) : TTTTTTTTTT-TTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATG-TATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NG-TTTTT-C-TGTA--NATATGCANG-C-T-AA-AN-T---A-TTCCACAA-TG-TT-NTG-AT-T---TCANNAC---A---AT----T--T-A--AAA-CATAT-AGTT----N-ATTGTCT-CAACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TGA----ATTANTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGNNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGA--ANANTT--TG--A-----TTGNA--A-GTA-CTA--ATAATGCTATTAT-ATTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
gi|1 : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-T-TT------TTCC--AAA---TTCGGC--ACA-GTAT-CTC----ACACCCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAA-TTGTA-ATA--------------TATAT-------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAA-ATTTATCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTTAC-CAAGATTT--AATTGCAACAAACT-C--T-CAACCTTGTATTT-GAA--GAAAGAAAGATAATGTAATAATCA-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TTGAACG-A-ATTAA---AAATGTTATTGTTTG-G--TATACAGAATTATAAAATTG-ATA------ACTTTATT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAATATAAC-A--T--TTGTA-ATAT-T---AAAACCAATTCTTCG--TGA-TG-TCTTT-C-TGTA--AATATGCATG-C-T-AA-AG-T---G-TTCCAAAG-TG-TTGATA-AT-T---TCAGAAC---A---AT----T--T-A--AAA-CATAT-AGTT----G-ATTGTTT-CGAC-TTCT-T-T-T-ACATAATGAACAACAGTTA----TCTG----AA-TGA----ATTATTT--TTTCTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA----T--T----TAT-T--AG-AA-TTCGATATTGTAG-CCATTGGACTTGGGTATCCAGTTGGTTG-TTTTAAAAA-CAA-ACTTTAA--ATAACTC-ATTG-GCA-GTAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATC---TGTTCCAA-TTTTGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTTATTTATC----AT-------ATCA-TATAAC-ACTTTGGAAC-AT-TTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGGAAATAATTGGTGTATACA--TT--TT------TTCCATATCAGTTCTT--GACAGACA----TA-TTC---TTAAGA--AAATTT--TG--A-----TTCTA--GTATA-CTA--ATAATACTATTAT-ATTGCATTGTACAT--ACACTGGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAGCAATAAA
gi|10 : TTG----TAT-T----GTT-TT--ACA-ACATTGATTTATATG-AATTGTTTG-G--TATATAAAGTTTTGAAATTT-ATT------ACTTTGTTTG----AT-----T-C-TAAT--AATGGACAATCACCAAAAATAAT-A--T--TAAAATACAT-T---GAAACGAATTCAGTT--TGT-TG-TTTTC-T-TGTA--TATATGCA
gi|11 : tggtaggT-T--T-CAACATTATAATT-CATTTTTAAAAAATTTATC-----AATCC-A-----ATTAGG------TTTGGCATTTT-TCCACATT-TGAAACA-A-CT--A---AAATA-TACTGTTTTTG--AATATAGTATTACAAAGTTT-ATAACTAAAACTTTGAT------------------AACTGAATGGTACTTCTCCAAAAATTAC-A--T--TTTTG-GCAT-T---AAAACCTATACGTTT--AGA-TG-TAGTA-T-TATA--TATATGTAGA-CTT-AG-AT-T---ATTTCCAAAA-TACTT-GTACATAT---TCA-CAC---A------------T-G--AAA-AATGT-A--TGCAAA-ATAGTTT-CAACATTtaatgcatacttggctgttatcataaagttaacctactactttgtcatagtacacagaaataatttgtacagtattttcagagttgtgtccactaaaagaacagatatcattatccacaagtttatttctttttcaaagtaacttttaacagggagaattc
gi|12 : gaatttttaaacagctatatattTTTTTT-ATTG----CTTATT-CTT---------------------AT-ATTCAT---CAA-T-AAATA-TATTG-AAA--CA-TACA-TATC-AG-TC-----TCTTT--TCT-TGTTGAA---CTTC--ACA---TTCG-C--ACC-GTAT-CTCTTGAACGCTCTTTC-AC-ACTACATTCATC---C--TATATAGTTATAG-TTGTATACA--------------TATAT-------ACAAAGT---------AC--T---T-GTACTTC--------AAATT-ATTCT-AA-TAATGTT----T-AGTCAAAAATATTTTTCCAATTTGCCCTAAAGTTTGTTTCGAATT---AATA-TTCCACGTATGATTT---ATTGCGACAAA
gi|13 : -TA-----T-TTT--TCT-TCTTCCTTCATTCC--ACAAATTTCG-C--ACA-GTAT-CTC----ACACTCTTCCAAC-ACT-T-TTCATC---CTGCATA-AATTATAG-TTG-A-AAA--------------TACAT-------ACATAGTA--------ACAAA---T-GTACTTC--------AA-TT-ATTCT---ATGATG-T----TCAGT
gi|14 : tttttttttttttttttttttttttttttttttttttttctctatttcatcaaataaatataacaaaacaataactattaatgttttttttttttttttgtttttttttttcTTTTTTCA-CTTTTTTTTTTT-ATTA----TTTA-TTCTTTTTCTCAT-------------AT-A---GC---CAA-T--------------AA--CA-TACAGTATT-AATTATTTTTT-TTT--TTC-TATT------TTCC---CA---TTCCGCTAACA-GTATCCTC----ACACTTTTTT-GCTATT-CTTTCATCCTGC-GCATA-ATCAGCAGTTTATATAAA--------------TATCC-------AAATAATAAAGGTAAAAC--AATTT-TTACTCCCTTTTCTAAA-TT-ATTCTAAAATGATG-T----TCAGTCAAAAATATTTATCCAAgc
gi|15 : cacaA--ATATGT--TG--ACA---TTGCA--A-G-A---A--ATAATGCTATTAT-ATTTCATTATTCAT---CAC
gi|16 : acaattccattctccccttagtggttacttgctgtacagcaatttataattgaacagaaaaaagaaaatgataaacataattctgtttagttgatatacatattagtcaaaaatatttttcaatctcatccaagctttatcaaaactAACTCTTTC--TGA-AGTTTTTT-C-TGTAATAATATGAAAGAC-T-CA-AA-TCTAA-TTCC-CAA-TG-TTCGTG-GG-T---TTATCAT---AC--ATGAAGT--A-A--AGA-CATGGAAATT----C-ATT-TCTCCAACATTAT-TAG-T-ACAAAATCTACAACAGTC-----------------------ATTATTT--TTTTTTCAAGT-CAATGATTCTG
gi|17 : TTT-TTGTTTTGTTTT-ATTA----TTTATT-CTTTTTCTCATGATTGGTACGTATATGATTTAT---ATT-T-A--TA-TA--GCAAAA-CACTACA-TATT-AA-TA-----T-TTT--TCT-TATT------TTCC--ACA---TTC-GC--ACA-GTAT-CTC----ACACTCTTTC-A----T-C------C---T-GCATA-A-TTATAG-TTGTA---A--------------TACAT-------tg
gi|18 : ctgtaATA-TATAGATTA-G--TATATAAAGTTATGAAATTA-ATA------ACTTTGTTTTTATAAC-----A-A-AAA--GAAA----TTTCA-CCAAGA-AAC-T--A--CTACACACAT-T---AAAAACGACTCTTTC--TGA-AG-TTTTT-
gi|19 : tactccgatgaaagagactttgtTA-ATT-ATAG-TTGTA-ATACATACATACATATATACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TTTATTCT-AAATGATGTT----C---TCAAAAATATTTTTCCAATTTGCCC-AAAATTTG--TCAAA---GAAA-A-TTTCA--CATGATTT--
gi|2 : TTTTT-ATCA----TTTATTCTTTTTCCTCA---------------T-ATTCAT---CAA-T-A--TA-TATAGCAAAAACA-TACA-TATT-AA-TA-----T-TT---CCA-TATT------TTCC--ACA---TTCG-C--ACATATAT-CTC----ACACTCCTTC-AC-CCT--------------GCATA-ATT-ATAG-TTGT-------------------TA----------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT-----CAGTCAAAAATATTTATCCAATTTGCCC-AAAGTTTA--TCAAATTTG-AA-AATTTCAC-AAAGATTT--AATTGCAACAAACTTC--T-CCACCTTGTATTT-GAA----AGAAAAGATAATGTAATAATCCAGTA-ATATTAGG-AG-T-TTTG----TTT-T----GTT-TTGAACACA-ATTAA---AAATG-TATTGTTTG-G--TATACAGAATTATAAACTTGAATA------CATTTATT------AC-----A---AAACTGAGAGGCCTTTCACCCAATATAAC-ATGT--CTGTA-ATAT-T---AAAACCATTTCTTCCGTTGGTTG-CTCTT-C-TGTA--AATATGCATG-C-T-AAGAG-T---G-TTCCAAAG-TG-TT-ATA-AT-T---TCAAGAA---A---AT----T--TAA--AAA-CATAT--GTTG---G-ATTGTTT-CAAC-TTC--T-T-T-ACATAATGAACAACAGTTA----TCTGA---AA-TGA------CATTTA-TTTTTT-AAGA-TAAT-ATTT-GTTGGCAAATAA----T--T----AATTT--AAGAA-TTCGATATTGTAG-CCATTGGACTTGGGTAT-CAG-TGGTTG-TTTT-AAAA-CAA-ACTTTAAACATAACTC-ATTG-GCAGAAAAC-ATT----TCTT--T----CCA---GATAGTACAGA-ATTTCTGTGTTCCAATTTCTGGA--TAGCTTTTGGAA-TT-GAG-ATT-TTGTTATTTTATC----AT-------AATATTATAA--ACTTTGGAAC-ACATTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGG-AATAAATGGTGTATATACTTT--TT------TTCCATATCAGTTCTCTTGACAGACA----TA-TTC---TT-A-A--AGAATT--AG--A-----T--AT--A-GTA-CTA--ATAATACTATTAT-ATTGCATTGTAC-T--ACACTTGCAAG---TCTAAATT---TTTGTGAAAAACATCTTGT-ATAATAAA
gi|20 : TTTTTTTTTT-TTTTTTTTTTTTAATTAATATCTTATTTCTTTTTCT----------------AT-ATTCAT---CAATT-A--TAGTA--GCAAA---A-CATA-TATT-AA-TA-----T-TTT--CCCATATT------TGCCAAATA---TTCG-----CA-G--T-TTC----A-ACCCTCTC-a
gi|21 : CCAACAGA-AA----TGAT----TATGTGTAA-AA-TTTTAAACTGTAA-CCATTAAGCAGAATAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--A
gi|22 : ttgttacttcgccattttatatT-TTTTTTTTTTTA-ATTA----TTTA-TTCTTTTTCTC---------------AT-ATTCATGTACAA-TAA--TA-TA--GCAAA--CATTACA-TCTTAAA-TA-----T-TTTTCCCC-TATT------TTCC--ACA---TTC-GC--AC
gi|24 : TT------AC-----A-C-AAACTGACAGGTCTTTCACCCAAAATAAC-A--T--TTG
gi|3 : TCAAAAATGTTTTTCCACAATGACC-ATAATTTT--TCAAACCTATAA-A-T------CACAATTTTGAATAGCAATATGCT-T--TTCAATGTTAAATTT-GAATTTCAAGTGAGATAA-----TAACCC-ATATATATTTGGTAGTT-T--G----TTC-T----GTT-TCAGACT-A-GAAAA---AAATA-TATTGTTTT-G--TGTATAGGATCAAAAAATTT-AGC------ACTTTGTT------TCTTCCTG-T-GAG-TGGGAGA----TCACC--AAATAAC-A--CAATTGGC-AAGT-T---AAATCCAACTCTCTC--TTT-GG-TTTTTGCATATA--TATATGTAAA-C-T-AA-AACT---A-CTCCATAA-TG-AC-ATA-AT-T---TTTTCAC---A---AT----CGAT-A--AAA--ATAT--GTT----GTATAGTTT-CGACATCTTGT-T-T-ACAAAAGGTACAGGAATCA-------G----AACTTACAAGATTGATT--TTCTTT-AA-A-TAGT-AATTAACAGGAAGA-A-----T--TCTAATATGA--AA-AA-TTCTGTATTGTAG-CCACTGAGCTGTAGAGT-CAG-TAGTTA-TTTTG-AAA-TAA-ACTTTAA--ATACATC-TTT---CA-CCAACAATTATTGTATT--C----TCT---GAG-G---AGATAATT-AGAGTTCCA---CCTGGA--AA--TT---GAA-TTAG-G-ATCAGTATAACTT--TC----AT--------TCA-TATG---ACTTTTGTAC-AT-TTTTCATATTATAGAATTGGTTCATAGTAAAATGG-TATAGAAGG--------------TT------TTAAATACTAGTTGTT--GAC--GCAATTCTA-TTTAAATT-AGGACACAGTTCATA--A-----TTGAAATA-GCA-CTT--ATAACGCT-TGATGGTTGC-TAATACATACACACTCAAAAGTTATCTA---T---CTTGTTTTAAA-ACATT-TAACAAt
gi|4 : aTTG--AATTGCAGCATATT-T--TTCCACAGAATATTTTAAACTTCAA-----ATGACATAGTAATCCTATA-AGGTTAGG---TTCTTTA----CCTCT----GCAATCAGACA-A-AT-AA---AGATG-TATTGTTTA-ACATATATAAAATTATAAAGTTT-ATA------GCTTTGTTT-----AT-----AAT-AGAC--AGTGGAATTTCACCTAATATAAT-A--T--T-GAC-ACAT-T---AAAACCAACTCTTTC--TGA-CG-ATTTT-C-TGTA--TATATGGAGA-C-TCAA-AT-C---A-TTCCACAA-TG-TT-TGG-GT-T---TTAAAAC---ATG-AA----G--T-A--AAG--ACAT-GGAT----C-ATTGTCT-CAACATTA--T-G-T-ACAAAATCTACAACAGTCATTAGTTTT----AA-C------ATTAATT--TTTTTC-AAG--TAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA--TCTAAACTGTAA-CCATTGAAC-AGAGAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--AT-ACTC-CTTGTACT-TGAA--ATA----TC-A--C----CCACTCTAT-ATGGAGATAATTCAGTCTTCCAC-TT---------GCCCATGGAAGTT-G-G-GATATTTCTTTTTTATTCAAAAT-------ATTG-TA-AATAATTTTAGAACAAT-TTTTCATGCAACAAAACAGGTTCAAAAAATACAGG-CATACATGGATTA-ATA--TT--TTGTTTAATTGAATGTC---TATC--AATAGATA----TACTTC---TT-A-A--ATATGT--TGACA-----TTGCA--A-G-A---A--ATAATGCTATTAT-ATTTCATTATTCAT---CACgacaaaaa
gi|5 : gttt--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTC----T-AGTCAAAAATATTTATCCAATTTGCCC-GAAGTTTG--TCAAATTTG-AA-A-TTTCAC--AAGATTT--TATTGCAACAAACT-TCTT-CAACCTTGTATTT-AAA-----AGAAAGATAATGTAATAATCCAGTA-ATATTAGG-AGTT-TT-G----TTT-T----GTT-TTGAACA-A--TTAA---AA-TG-TATTGTTTG-G--TATAAAGAATTATAAAATTG-ATA------ACT---------------------------GAGAGGCCTTTCACCCAATATAACCA--T--TTGTA-ATAT-T---AAT-CCAGTTCTTCG--TGA-TG-TCTTT-C-TGTA--AATAGGCATG-C-T-AAGAG-T---G-TTCCAAAAGTG-TT-ATA-AT-T---TCAGAAC---A---AT----T--T-A--AAAACATAT--GTT----G-GATGTTT-CAAC-TTCT-T-T---ACATAATG-ACA-CAGTTA----TCTG----AAATGA------CATTTA-TTTTTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA-----------------------A-TTCTAT----TAGGCCATTGGACTTGGGTAT-CAG-TGGTTA-TTTTAAAAAACAA-ACTTTAA--ATAACTC-ATTG-GCA-GAAAC-ATT----TCTT--T----CCA---GAT-GTACAGATAATTCTGTGTTCCAA-TTTTGGATGTAGCTTTTGGAA-TG-A-A-ATTATTG--CATTTAagttttgataaagcttggatgagattgaaaaatatttt
gi|6 : A-ATTTATAA-TTTTA-AAA---------------ACAGCAAAAGAAAATAAT---------AA--A---TAGTA-TTC------------T-ATT-T-AGTTGATATACGAATCAGTCAAAAATATTTTTCAACCTCATCC-AGGCTTTA--TCAAAATTGTGC-A-TTTTAT--GTCATTG--AATTGCAGCATATTTC--T-CCACAAGATATTT-CAACTTCAA-----ATGACATAATAATCCTATA-AGGTTAGG---TTCTTTA----CTC-T----GCA-TCAAACA-A-ATTTT---TGATG-TATTGTTTA-A--CATATAAAATTATAAAGTTT-ATA------GCTTTGTT------ATCA---A-T-AGAC--AGTGGGATTTCACCTAATATAAT-A--T--TTGAC-ACAT-TTAAAAAACCAACTCTTTC--TGA-AG-TTTTT-C-TGTA--TAT------------------C---A-TTCCACAA-TG-TT-TGG-GT-T---TTATCACATGA---AG----T--A-A--AGA-CATGT-A--T----C-ATTGTCT-CAACATTAT-T-TGT-ACAAAATCTACAACAGTC-----------------------ATTAG------TTTT-AACATTAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA-TTCTAAAGTGCAA-CCATTGAACAGAAGAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--ATActgta
gi|7 : cacttccttctcgcagtggttacttgctacttgctgtgcagcTTA-C-TGTA----TATGTAGG-C-T-CA-TC-TC--A-CCTCACAA-TG-TT-TGG-AT-TATATCACAAC---A----T----T--T-AGTAAA-AATAT-GTTT----C-ATTGTCT-CAACATTTT-C-T-TGACA-AATTTAGGACAATCG----TATGTTTTAA-T------ATTAATC--TTTTTC-AGG--CAAT-ATCCAACAGTAAGA-AA----T--C----TATAT--AA-AA-TTATAAATTGCAA-CCATTGAACTGAAAAGT-CA----GTTG-TTTTG-AAA-CAA-ATTTTAA--ACACATC-TTGA-ACT-AAAAT-ATC----ACATACT----CCA---TATGGT---GTTAATTCAGTCTTCCAT-TTCCTTA--AAGC------AG-TT-G-G-GCTATC-CTCATTT-TC----ATTCAAAGAATTA-TAAATT-ATTTAGGATC-AC-TGTTCATGTGGCATAACATTTTCAAAAGATATAGG-TATACATGGATCAGGAA--TTCGTTAG----CTAAATCTC---TATC--AATAGATA------------------A--ACAGTT--TA--AGCGTTTTGAA--A--TAGCTGTTTTAATACTATTAT-ATTTCATTACACAT--AC-CTCATAG-------AGATTGTATGTGCGTAGAA-ATTT
gi|8 : ACCTAA--TAAG-A--TA-CTGCATACAT-T---AAAACCGATTCTTTC--TAA-AC-TTTGT-C-TTTA--TCTGTGTAGG-A-T-CA-AC-TC--A-ATCCACAA-TG-TC-TGG-AT-T---TTATCAC---ATGAAT----T-------AAA-TATAT-A--T----C-ATTGTCT-CAACATTTT-C-T-TGACAAAATATATAACAATCA----TC-------A-TGTTTT-ATTATTTATCTTTTC-CAGG-TAAT-ATCCAAC-AGCAAG-GA----T--TC---TATGT--AA-AAATTCTAAATTGCAA-CCATTTAACTAAAGAGT-CAG-CTCTTGCTTTTGAAAA-AAATATTTTG-----AACCCATTTT-GAA-TTAAA-ATA----TCAC--CTACTCCA---TAT-GAAT--TTAATCCAGTCTTCCAT-TTCCTTA--TAGCAGTTG-----T-G-GTATCATCATT--TTCAT------T-------ACTA-TAAAAT-ACTTTGGAAC-AC-TTTTCATGTGGCATAAatccaaggctaaaaaa
gi|9 : A------ACTTTATC------AC-----A-CGAAACTGATAGGCCTTTCACCCAAAATAAT-AA-G--TTATA-TCATAT---AAAACCA-TTTTTTG--TGA-TG-TCTTT-C-TGTA--AATATGCATG-C-T-AA-GA-----------------G-TT-TTA-TT-T---TCAGAAC---A---AT----T--TAA--AAA-CATAT--GTTG---G-ATTGTTT-CAAC-TTC--C-T-T-ACGTAATAAAGAACAGTCA----TCTGA---AA-TGAC---ATTTATT--TCCTTT-AAGA-TAAT-ATTTTGTTGGCAGA-GA----C--T----TAT-T--AAGAA-TTTGACATTGTAG-CCACTGAACTTGGGTAT-CAG-TGGTTG-TTTT-AAAA-CAA-ACTTT-A--ATAACTC-TTTC-GTA-CCAAC-ATT----ACTT--T----CCA---GAT-GTACAGATAATTATGTGTTCCAA-TATTGGA--TAGCTTTGAGAA-TG-A-G-ATTATTaattttccagaaatatagg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTTTCAGCCTCATCCAAGCTTTATCAAAACTGCATTTTAAG
Alignments
lowQualScore : 1111 4444444444444444 111 1111 11 11 1 11111 222222 22 1111 22222222222222 333333333333333333 1111111 222222222 11111111 111111 1 111 222222 2222 11 2 222222 1111 1111 111111 4444444444444444444444 11111 1 2222222222 11111 22222222222222 33333333333 111111111 666666666666666666666666 11 111111 333333333333 11 111111111111111 1 11 11111 22222222222222 11111 4444444444444444444444 111 11 555555555555555555555555555555555555555555555555555555555 111 2222 111 1
lowQualScore : 8 5 2222 5 7 4444444444444444 5 000 5 1111 5 55 0 33 1 5 5 5 22222 5 66 5 2 333333 66 888 00 66 5 5 2222 5 6 88888888888888 5 3 6 5 444444444444444444 0 4444444 0 555555555 999999 5 88888888 5 5 5 0 3 888888 1 5 77 3 1 7 5 5 888 1 888 1 000000 1 1 77 1111 00 0 99 2 5 1 555555 0 0000 5 0000 5 55 5 999999999 4 55 66 66 111111 5555555555555555555555 0 77 2 4 3 22222 1 0 3 666 44 44 3 3 3 888 1 2 3 3 3 2222222222 2 3 3 00000 3 666 55 666 99999999999999 55 88 33333333333 3 8 555555555 4 44 333333333333333333333333 1 33 4 88 4 444444 4 000000000000 8888 8 4 1 4 22 1 4 4 1 4 88 4 4 55 66 99 777 66 666666666666666 888 0 3333 88 11 55 777 444 5 5 5 5 55555 11 22222222222222 6 77777 6 6 1 2 1 1 1 1 1 99 1 5555555555555555555555 11 111 1 11 0 333333333333333333333333333333333333333333333333333333333 6 1 666 0 0 0000 7 777 0 0 6 7
lowQualScore : . . .... . . ................ . ... . .... . .. . .. . . . . ..... . .. . . ...... .. ... .. .. . . .... . . .............. . . . . .................. . ....... . ......... ...... . ........ . . . . . ...... . . .. . . . . . ... . ... . ...... . . .. .... .. . .. . . . ...... . .... . .... . .. . ......... . .. .. .. ...... ...................... . .. . . . ..... . . . ... .. .. . . . ... . . . . . .......... . . . ..... . ... .. ... .............. .. .. ........... . . ......... . .. ........................ . .. . .. . ...... . ............ .... . . . . .. . . . . . .. . . .. .. .. ... .. ............... ... . .... .. .. .. ... ... . . . . ..... .. .............. . ..... . . . . . . . . . .. . ...................... .. ... . .. . ......................................................... . . ... . . .... . ... . . . .
lowQualScore : 0 7 1111 0 1 9999999999999999 7 000 7 6666 7 77 7 66 4 7 7 0 55555 0 99 0 0 111111 99 888 66 99 7 7 1111 7 7 88888888888888 0 4 5 0 777777777777777777 9 4444444 2 000000000 999999 0 11111111 0 0 0 4 2 444444 0 7 99 9 4 1 7 7 999 0 666 0 999999 3 0 44 6666 44 7 33 9 7 3 777777 1 6666 0 6666 0 44 0 999999999 4 33 11 33 555555 3333333333333333333333 5 99 3 2 3 33333 0 9 6 444 66 33 3 1 3 888 6 3 6 6 6 8888888888 8 6 6 44444 6 444 55 444 55555555555555 00 77 11111111111 6 8 222222222 9 77 000000000000000000000000 0 55 0 99 0 444444 0 333333333333 1111 0 0 0 0 11 4 0 0 4 0 77 0 0 55 00 55 000 44 555555555555555 888 0 9999 44 66 44 444 555 0 0 0 0 33333 66 88888888888888 7 22222 7 7 0 2 0 4 0 4 0 00 0 8888888888888888888888 66 222 0 00 8 666666666666666666666666666666666666666666666666666666666 7 0 555 2 2 0000 0 555 0 2 7 3
consensus : TTTTTTTTTT-TTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATG-TATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NG-TTTTT-C-TGTA--NATATGCANG-C-T-AA-AN-T---A-TTCCACAA-TG-TT-NTG-AT-T---TCANNAC---A---AT----T--T-A--AAA-CATAT-AGTT----N-ATTGTCT-CAACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TGA----ATTANTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGNNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGA--ANANTT--TG--A-----TTGNA--A-GTA-CTA--ATAATGCTATTAT-ATTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
Reference ( family-723 ) : TTTTTTTTTT-TTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATG-TATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NG-TTTTT-C-TGTA--NATATGCANG-C-T-AA-AN-T---A-TTCCACAA-TG-TT-NTG-AT-T---TCANNAC---A---AT----T--T-A--AAA-CATAT-AGTT----N-ATTGTCT-CAACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TGA----ATTANTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGNNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGA--ANANTT--TG--A-----TTGNA--A-GTA-CTA--ATAATGCTATTAT-ATTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
gi|1 : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-T-TT------TTCC--AAA---TTCGGC--ACA-GTAT-CTC----ACACCCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAA-TTGTA-ATA--------------TATAT-------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAA-ATTTATCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTTAC-CAAGATTT--AATTGCAACAAACT-C--T-CAACCTTGTATTT-GAA--GAAAGAAAGATAATGTAATAATCA-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TTGAACG-A-ATTAA---AAATGTTATTGTTTG-G--TATACAGAATTATAAAATTG-ATA------ACTTTATT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAATATAAC-A--T--TTGTA-ATAT-T---AAAACCAATTCTTCG--TGA-TG-TCTTT-C-TGTA--AATATGCATG-C-T-AA-AG-T---G-TTCCAAAG-TG-TTGATA-AT-T---TCAGAAC---A---AT----T--T-A--AAA-CATAT-AGTT----G-ATTGTTT-CGAC-TTCT-T-T-T-ACATAATGAACAACAGTTA----TCTG----AA-TGA----ATTATTT--TTTCTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA----T--T----TAT-T--AG-AA-TTCGATATTGTAG-CCATTGGACTTGGGTATCCAGTTGGTTG-TTTTAAAAA-CAA-ACTTTAA--ATAACTC-ATTG-GCA-GTAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATC---TGTTCCAA-TTTTGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTTATTTATC----AT-------ATCA-TATAAC-ACTTTGGAAC-AT-TTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGGAAATAATTGGTGTATACA--TT--TT------TTCCATATCAGTTCTT--GACAGACA----TA-TTC---TTAAGA--AAATTT--TG--A-----TTCTA--GTATA-CTA--ATAATACTATTAT-ATTGCATTGTACAT--ACACTGGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAGCAATAAA
gi|10 : TTG----TAT-T----GTT-TT--ACA-ACATTGATTTATATG-AATTGTTTG-G--TATATAAAGTTTTGAAATTT-ATT------ACTTTGTTTG----AT-----T-C-TAAT--AATGGACAATCACCAAAAATAAT-A--T--TAAAATACAT-T---GAAACGAATTCAGTT--TGT-TG-TTTTC-T-TGTA--TATATGCA
gi|11 : tggtaggT-T--T-CAACATTATAATT-CATTTTTAAAAAATTTATC-----AATCC-A-----ATTAGG------TTTGGCATTTT-TCCACATT-TGAAACA-A-CT--A---AAATA-TACTGTTTTTG--AATATAGTATTACAAAGTTT-ATAACTAAAACTTTGAT------------------AACTGAATGGTACTTCTCCAAAAATTAC-A--T--TTTTG-GCAT-T---AAAACCTATACGTTT--AGA-TG-TAGTA-T-TATA--TATATGTAGA-CTT-AG-AT-T---ATTTCCAAAA-TACTT-GTACATAT---TCA-CAC---A------------T-G--AAA-AATGT-A--TGCAAA-ATAGTTT-CAACATTtaatgcatacttggctgttatcataaagttaacctactactttgtcatagtacacagaaataatttgtacagtattttcagagttgtgtccactaaaagaacagatatcattatccacaagtttatttctttttcaaagtaacttttaacagggagaattc
gi|12 : gaatttttaaacagctatatattTTTTTT-ATTG----CTTATT-CTT---------------------AT-ATTCAT---CAA-T-AAATA-TATTG-AAA--CA-TACA-TATC-AG-TC-----TCTTT--TCT-TGTTGAA---CTTC--ACA---TTCG-C--ACC-GTAT-CTCTTGAACGCTCTTTC-AC-ACTACATTCATC---C--TATATAGTTATAG-TTGTATACA--------------TATAT-------ACAAAGT---------AC--T---T-GTACTTC--------AAATT-ATTCT-AA-TAATGTT----T-AGTCAAAAATATTTTTCCAATTTGCCCTAAAGTTTGTTTCGAATT---AATA-TTCCACGTATGATTT---ATTGCGACAAA
gi|13 : -TA-----T-TTT--TCT-TCTTCCTTCATTCC--ACAAATTTCG-C--ACA-GTAT-CTC----ACACTCTTCCAAC-ACT-T-TTCATC---CTGCATA-AATTATAG-TTG-A-AAA--------------TACAT-------ACATAGTA--------ACAAA---T-GTACTTC--------AA-TT-ATTCT---ATGATG-T----TCAGT
gi|14 : tttttttttttttttttttttttttttttttttttttttctctatttcatcaaataaatataacaaaacaataactattaatgttttttttttttttttgtttttttttttcTTTTTTCA-CTTTTTTTTTTT-ATTA----TTTA-TTCTTTTTCTCAT-------------AT-A---GC---CAA-T--------------AA--CA-TACAGTATT-AATTATTTTTT-TTT--TTC-TATT------TTCC---CA---TTCCGCTAACA-GTATCCTC----ACACTTTTTT-GCTATT-CTTTCATCCTGC-GCATA-ATCAGCAGTTTATATAAA--------------TATCC-------AAATAATAAAGGTAAAAC--AATTT-TTACTCCCTTTTCTAAA-TT-ATTCTAAAATGATG-T----TCAGTCAAAAATATTTATCCAAgc
gi|15 : cacaA--ATATGT--TG--ACA---TTGCA--A-G-A---A--ATAATGCTATTAT-ATTTCATTATTCAT---CAC
gi|16 : acaattccattctccccttagtggttacttgctgtacagcaatttataattgaacagaaaaaagaaaatgataaacataattctgtttagttgatatacatattagtcaaaaatatttttcaatctcatccaagctttatcaaaactAACTCTTTC--TGA-AGTTTTTT-C-TGTAATAATATGAAAGAC-T-CA-AA-TCTAA-TTCC-CAA-TG-TTCGTG-GG-T---TTATCAT---AC--ATGAAGT--A-A--AGA-CATGGAAATT----C-ATT-TCTCCAACATTAT-TAG-T-ACAAAATCTACAACAGTC-----------------------ATTATTT--TTTTTTCAAGT-CAATGATTCTG
gi|17 : TTT-TTGTTTTGTTTT-ATTA----TTTATT-CTTTTTCTCATGATTGGTACGTATATGATTTAT---ATT-T-A--TA-TA--GCAAAA-CACTACA-TATT-AA-TA-----T-TTT--TCT-TATT------TTCC--ACA---TTC-GC--ACA-GTAT-CTC----ACACTCTTTC-A----T-C------C---T-GCATA-A-TTATAG-TTGTA---A--------------TACAT-------tg
gi|18 : ctgtaATA-TATAGATTA-G--TATATAAAGTTATGAAATTA-ATA------ACTTTGTTTTTATAAC-----A-A-AAA--GAAA----TTTCA-CCAAGA-AAC-T--A--CTACACACAT-T---AAAAACGACTCTTTC--TGA-AG-TTTTT-
gi|19 : tactccgatgaaagagactttgtTA-ATT-ATAG-TTGTA-ATACATACATACATATATACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TTTATTCT-AAATGATGTT----C---TCAAAAATATTTTTCCAATTTGCCC-AAAATTTG--TCAAA---GAAA-A-TTTCA--CATGATTT--
gi|2 : TTTTT-ATCA----TTTATTCTTTTTCCTCA---------------T-ATTCAT---CAA-T-A--TA-TATAGCAAAAACA-TACA-TATT-AA-TA-----T-TT---CCA-TATT------TTCC--ACA---TTCG-C--ACATATAT-CTC----ACACTCCTTC-AC-CCT--------------GCATA-ATT-ATAG-TTGT-------------------TA----------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT-----CAGTCAAAAATATTTATCCAATTTGCCC-AAAGTTTA--TCAAATTTG-AA-AATTTCAC-AAAGATTT--AATTGCAACAAACTTC--T-CCACCTTGTATTT-GAA----AGAAAAGATAATGTAATAATCCAGTA-ATATTAGG-AG-T-TTTG----TTT-T----GTT-TTGAACACA-ATTAA---AAATG-TATTGTTTG-G--TATACAGAATTATAAACTTGAATA------CATTTATT------AC-----A---AAACTGAGAGGCCTTTCACCCAATATAAC-ATGT--CTGTA-ATAT-T---AAAACCATTTCTTCCGTTGGTTG-CTCTT-C-TGTA--AATATGCATG-C-T-AAGAG-T---G-TTCCAAAG-TG-TT-ATA-AT-T---TCAAGAA---A---AT----T--TAA--AAA-CATAT--GTTG---G-ATTGTTT-CAAC-TTC--T-T-T-ACATAATGAACAACAGTTA----TCTGA---AA-TGA------CATTTA-TTTTTT-AAGA-TAAT-ATTT-GTTGGCAAATAA----T--T----AATTT--AAGAA-TTCGATATTGTAG-CCATTGGACTTGGGTAT-CAG-TGGTTG-TTTT-AAAA-CAA-ACTTTAAACATAACTC-ATTG-GCAGAAAAC-ATT----TCTT--T----CCA---GATAGTACAGA-ATTTCTGTGTTCCAATTTCTGGA--TAGCTTTTGGAA-TT-GAG-ATT-TTGTTATTTTATC----AT-------AATATTATAA--ACTTTGGAAC-ACATTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGG-AATAAATGGTGTATATACTTT--TT------TTCCATATCAGTTCTCTTGACAGACA----TA-TTC---TT-A-A--AGAATT--AG--A-----T--AT--A-GTA-CTA--ATAATACTATTAT-ATTGCATTGTAC-T--ACACTTGCAAG---TCTAAATT---TTTGTGAAAAACATCTTGT-ATAATAAA
gi|20 : TTTTTTTTTT-TTTTTTTTTTTTAATTAATATCTTATTTCTTTTTCT----------------AT-ATTCAT---CAATT-A--TAGTA--GCAAA---A-CATA-TATT-AA-TA-----T-TTT--CCCATATT------TGCCAAATA---TTCG-----CA-G--T-TTC----A-ACCCTCTC-a
gi|21 : CCAACAGA-AA----TGAT----TATGTGTAA-AA-TTTTAAACTGTAA-CCATTAAGCAGAATAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--A
gi|22 : ttgttacttcgccattttatatT-TTTTTTTTTTTA-ATTA----TTTA-TTCTTTTTCTC---------------AT-ATTCATGTACAA-TAA--TA-TA--GCAAA--CATTACA-TCTTAAA-TA-----T-TTTTCCCC-TATT------TTCC--ACA---TTC-GC--AC
gi|24 : TT------AC-----A-C-AAACTGACAGGTCTTTCACCCAAAATAAC-A--T--TTG
gi|3 : TCAAAAATGTTTTTCCACAATGACC-ATAATTTT--TCAAACCTATAA-A-T------CACAATTTTGAATAGCAATATGCT-T--TTCAATGTTAAATTT-GAATTTCAAGTGAGATAA-----TAACCC-ATATATATTTGGTAGTT-T--G----TTC-T----GTT-TCAGACT-A-GAAAA---AAATA-TATTGTTTT-G--TGTATAGGATCAAAAAATTT-AGC------ACTTTGTT------TCTTCCTG-T-GAG-TGGGAGA----TCACC--AAATAAC-A--CAATTGGC-AAGT-T---AAATCCAACTCTCTC--TTT-GG-TTTTTGCATATA--TATATGTAAA-C-T-AA-AACT---A-CTCCATAA-TG-AC-ATA-AT-T---TTTTCAC---A---AT----CGAT-A--AAA--ATAT--GTT----GTATAGTTT-CGACATCTTGT-T-T-ACAAAAGGTACAGGAATCA-------G----AACTTACAAGATTGATT--TTCTTT-AA-A-TAGT-AATTAACAGGAAGA-A-----T--TCTAATATGA--AA-AA-TTCTGTATTGTAG-CCACTGAGCTGTAGAGT-CAG-TAGTTA-TTTTG-AAA-TAA-ACTTTAA--ATACATC-TTT---CA-CCAACAATTATTGTATT--C----TCT---GAG-G---AGATAATT-AGAGTTCCA---CCTGGA--AA--TT---GAA-TTAG-G-ATCAGTATAACTT--TC----AT--------TCA-TATG---ACTTTTGTAC-AT-TTTTCATATTATAGAATTGGTTCATAGTAAAATGG-TATAGAAGG--------------TT------TTAAATACTAGTTGTT--GAC--GCAATTCTA-TTTAAATT-AGGACACAGTTCATA--A-----TTGAAATA-GCA-CTT--ATAACGCT-TGATGGTTGC-TAATACATACACACTCAAAAGTTATCTA---T---CTTGTTTTAAA-ACATT-TAACAAt
gi|4 : aTTG--AATTGCAGCATATT-T--TTCCACAGAATATTTTAAACTTCAA-----ATGACATAGTAATCCTATA-AGGTTAGG---TTCTTTA----CCTCT----GCAATCAGACA-A-AT-AA---AGATG-TATTGTTTA-ACATATATAAAATTATAAAGTTT-ATA------GCTTTGTTT-----AT-----AAT-AGAC--AGTGGAATTTCACCTAATATAAT-A--T--T-GAC-ACAT-T---AAAACCAACTCTTTC--TGA-CG-ATTTT-C-TGTA--TATATGGAGA-C-TCAA-AT-C---A-TTCCACAA-TG-TT-TGG-GT-T---TTAAAAC---ATG-AA----G--T-A--AAG--ACAT-GGAT----C-ATTGTCT-CAACATTA--T-G-T-ACAAAATCTACAACAGTCATTAGTTTT----AA-C------ATTAATT--TTTTTC-AAG--TAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA--TCTAAACTGTAA-CCATTGAAC-AGAGAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--AT-ACTC-CTTGTACT-TGAA--ATA----TC-A--C----CCACTCTAT-ATGGAGATAATTCAGTCTTCCAC-TT---------GCCCATGGAAGTT-G-G-GATATTTCTTTTTTATTCAAAAT-------ATTG-TA-AATAATTTTAGAACAAT-TTTTCATGCAACAAAACAGGTTCAAAAAATACAGG-CATACATGGATTA-ATA--TT--TTGTTTAATTGAATGTC---TATC--AATAGATA----TACTTC---TT-A-A--ATATGT--TGACA-----TTGCA--A-G-A---A--ATAATGCTATTAT-ATTTCATTATTCAT---CACgacaaaaa
gi|5 : gttt--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTC----T-AGTCAAAAATATTTATCCAATTTGCCC-GAAGTTTG--TCAAATTTG-AA-A-TTTCAC--AAGATTT--TATTGCAACAAACT-TCTT-CAACCTTGTATTT-AAA-----AGAAAGATAATGTAATAATCCAGTA-ATATTAGG-AGTT-TT-G----TTT-T----GTT-TTGAACA-A--TTAA---AA-TG-TATTGTTTG-G--TATAAAGAATTATAAAATTG-ATA------ACT---------------------------GAGAGGCCTTTCACCCAATATAACCA--T--TTGTA-ATAT-T---AAT-CCAGTTCTTCG--TGA-TG-TCTTT-C-TGTA--AATAGGCATG-C-T-AAGAG-T---G-TTCCAAAAGTG-TT-ATA-AT-T---TCAGAAC---A---AT----T--T-A--AAAACATAT--GTT----G-GATGTTT-CAAC-TTCT-T-T---ACATAATG-ACA-CAGTTA----TCTG----AAATGA------CATTTA-TTTTTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA-----------------------A-TTCTAT----TAGGCCATTGGACTTGGGTAT-CAG-TGGTTA-TTTTAAAAAACAA-ACTTTAA--ATAACTC-ATTG-GCA-GAAAC-ATT----TCTT--T----CCA---GAT-GTACAGATAATTCTGTGTTCCAA-TTTTGGATGTAGCTTTTGGAA-TG-A-A-ATTATTG--CATTTAagttttgataaagcttggatgagattgaaaaatatttt
gi|6 : A-ATTTATAA-TTTTA-AAA---------------ACAGCAAAAGAAAATAAT---------AA--A---TAGTA-TTC------------T-ATT-T-AGTTGATATACGAATCAGTCAAAAATATTTTTCAACCTCATCC-AGGCTTTA--TCAAAATTGTGC-A-TTTTAT--GTCATTG--AATTGCAGCATATTTC--T-CCACAAGATATTT-CAACTTCAA-----ATGACATAATAATCCTATA-AGGTTAGG---TTCTTTA----CTC-T----GCA-TCAAACA-A-ATTTT---TGATG-TATTGTTTA-A--CATATAAAATTATAAAGTTT-ATA------GCTTTGTT------ATCA---A-T-AGAC--AGTGGGATTTCACCTAATATAAT-A--T--TTGAC-ACAT-TTAAAAAACCAACTCTTTC--TGA-AG-TTTTT-C-TGTA--TAT------------------C---A-TTCCACAA-TG-TT-TGG-GT-T---TTATCACATGA---AG----T--A-A--AGA-CATGT-A--T----C-ATTGTCT-CAACATTAT-T-TGT-ACAAAATCTACAACAGTC-----------------------ATTAG------TTTT-AACATTAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA-TTCTAAAGTGCAA-CCATTGAACAGAAGAAT-CAG-TAGTTG-TTTTG-AAA-CAA-ATTTTAA--ATActgta
gi|7 : cacttccttctcgcagtggttacttgctacttgctgtgcagcTTA-C-TGTA----TATGTAGG-C-T-CA-TC-TC--A-CCTCACAA-TG-TT-TGG-AT-TATATCACAAC---A----T----T--T-AGTAAA-AATAT-GTTT----C-ATTGTCT-CAACATTTT-C-T-TGACA-AATTTAGGACAATCG----TATGTTTTAA-T------ATTAATC--TTTTTC-AGG--CAAT-ATCCAACAGTAAGA-AA----T--C----TATAT--AA-AA-TTATAAATTGCAA-CCATTGAACTGAAAAGT-CA----GTTG-TTTTG-AAA-CAA-ATTTTAA--ACACATC-TTGA-ACT-AAAAT-ATC----ACATACT----CCA---TATGGT---GTTAATTCAGTCTTCCAT-TTCCTTA--AAGC------AG-TT-G-G-GCTATC-CTCATTT-TC----ATTCAAAGAATTA-TAAATT-ATTTAGGATC-AC-TGTTCATGTGGCATAACATTTTCAAAAGATATAGG-TATACATGGATCAGGAA--TTCGTTAG----CTAAATCTC---TATC--AATAGATA------------------A--ACAGTT--TA--AGCGTTTTGAA--A--TAGCTGTTTTAATACTATTAT-ATTTCATTACACAT--AC-CTCATAG-------AGATTGTATGTGCGTAGAA-ATTT
gi|8 : ACCTAA--TAAG-A--TA-CTGCATACAT-T---AAAACCGATTCTTTC--TAA-AC-TTTGT-C-TTTA--TCTGTGTAGG-A-T-CA-AC-TC--A-ATCCACAA-TG-TC-TGG-AT-T---TTATCAC---ATGAAT----T-------AAA-TATAT-A--T----C-ATTGTCT-CAACATTTT-C-T-TGACAAAATATATAACAATCA----TC-------A-TGTTTT-ATTATTTATCTTTTC-CAGG-TAAT-ATCCAAC-AGCAAG-GA----T--TC---TATGT--AA-AAATTCTAAATTGCAA-CCATTTAACTAAAGAGT-CAG-CTCTTGCTTTTGAAAA-AAATATTTTG-----AACCCATTTT-GAA-TTAAA-ATA----TCAC--CTACTCCA---TAT-GAAT--TTAATCCAGTCTTCCAT-TTCCTTA--TAGCAGTTG-----T-G-GTATCATCATT--TTCAT------T-------ACTA-TAAAAT-ACTTTGGAAC-AC-TTTTCATGTGGCATAAatccaaggctaaaaaa
gi|9 : A------ACTTTATC------AC-----A-CGAAACTGATAGGCCTTTCACCCAAAATAAT-AA-G--TTATA-TCATAT---AAAACCA-TTTTTTG--TGA-TG-TCTTT-C-TGTA--AATATGCATG-C-T-AA-GA-----------------G-TT-TTA-TT-T---TCAGAAC---A---AT----T--TAA--AAA-CATAT--GTTG---G-ATTGTTT-CAAC-TTC--C-T-T-ACGTAATAAAGAACAGTCA----TCTGA---AA-TGAC---ATTTATT--TCCTTT-AAGA-TAAT-ATTTTGTTGGCAGA-GA----C--T----TAT-T--AAGAA-TTTGACATTGTAG-CCACTGAACTTGGGTAT-CAG-TGGTTG-TTTT-AAAA-CAA-ACTTT-A--ATAACTC-TTTC-GTA-CCAAC-ATT----ACTT--T----CCA---GAT-GTACAGATAATTATGTGTTCCAA-TATTGGA--TAGCTTTGAGAA-TG-A-G-ATTATTaattttccagaaatatagg
blockSeqs : . A ATAT T T CATGATTGGTACGTAT G GTA T AAA G TT AA C G A T TTTTT C TC A G CCTTCA AA AAT CG TA T C TTGA A T CTTTCATCCTGC T G T T ATACATACATACATATA CAAAAGA AAAGGTAAA AATT A CTTTTCTA A T A T CGAATC T T TT T T A T A CGT T TGA A TCTT A A TA TTTT AA TG A T T TAGTT GCAT C CCAC A GA C CATTGATTT . TT CA GA ACTAAA TTTATAACAAAAA AC A A C TGT A T A TAA GT TT T G A ATA C G A T C AATCTAA A G C GTAC A ATA TC ATG CATGAAGTA GT AC ATGCAAA C A ATTAGT A CT AGAACTTACAAGA T AT C AT G TTAACA T TTCTAA GTGT G A T G TT T . . G C AA A T AC AT GT GAA CA ATTGTATTC CTC A TACA CT AT CT TGT TTT G A A T GTTAT TA CATTCAAAGA T AATA A A T A G G T A A A A ATTAATATTTTGTTTAA CC AGT C TT ATTCTATTTAAATTAGGACACAGTTCATAATTGAAATAGCACTT G T ACA GTTA A GTA C G A
blockSeqs : . . . T C CAT . . . AA . TA A T . . . . . . . C GAA . . G . . . . . . ACATTCATCC . A T . TACA . A AAA . . . . . T TC A . . T T T . . CA T A A TCT C C C TTTC AA CA T . T AGTT . . . . TG . ATTAA . G . T . TCTTCCTGTGAGT TA A A . CAA T C . . . T . . . T T A . . . ATTAT C . . CGTG . . AG . ATCGAT . A AAATTC . A TTGTTT T GA ATTAGTTTTAACA T A . T . TTTGTT . TGATTC TT G . A . AG A . . A . GA . . . A G CC C TCACCTACT . G TGGA CA C CT T CCA . . . . ATAAC TA TCAAAAT . AATT . . A T G T T A A T G ATCAGGAATTCGTTAG AA AGT G . TACTTCTTAAATATGTTGACATTGCAAGAA . G A G G . . . .
blockSeqs : . . . T T CA . . . A . . . . . . . . . . . A . . . G . . . . . . TTTCATCCT . T A . TAAA . . T . . . . . T TC T . . C T T . . C A A T TTT A G G CTTC GT TG A . G AGT . . . . CA . GAAAA . A . T . TGATTCTAAT CC C G . TA C T . . . T . . . T A T . . . GAGTG A . . ATA . . TC . TGAAGT . C GTTGG . A ATTTGT A GT GTATGTTTTAATA A A . A . CCAACA . TGATTC GA . . T . TG A . . A . A . . . T G TG C ACATACT . . TACA CT A TT A TTT . . . . TCTTT TA CAT . AAAT . . G A A A A T C C C TGTATATACTTTTT GA . A . AACAGTTTAAGCGTTTTGAAATAGCTGTT . G A . . . .
blockSeqs : . . . T T C . . . A . . . . . . . . . . . A . . . G . . . . . . CCT . T T . AAA . . A . . . . . T T A . . T T . . . C C T T TTT C A G CTTC GA CA T . T TTC . . . . CA . ATTTT . G . A . TATAATAGAC TC C T . AG T . . . . A . . . A C A . . . AACTA T . . ATA . . AA . TGAATT . C GTTGT . A TTCTTG A CT ATCTGAAATGACA A . . A . TTTGTT . TGAT GT . . A . TT A . . A . G . . . C A GA T TCTTT . . TACA CA T CC A AGT . . . . CTCA CA CAT . TAA . . G G T A G T T T C TT AA . A . TATTCTTAAAGAATTAGATATAGTACTA . T .
blockSeqs : . . . . . . . . A . . . . . . . . . . . A . . . G . . . . . . . . T T . AAA . . A . . . . . T C T . . A . . . . C A A A TCT A C A . . C . . G TTC . . . . TG . ATAA . T . T . ATCAATAGAC AA C A . T G . . . . A . . . T T G . . . GAGTG C . . TGG . . GA . ATTTA . C GGATC . A TTCTTG T CT ATCTGAAATGA T . . A . TTGTT . TTC GT . . T . AG T . . G . G . . . A T AA A TCTTT . . AAT CA T CC T TTT . . . . GCA T T . TG . . G G T . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . A . . . G . . . . . . T . . A . . A . . . . . . C A . . . . . . . T T . T TT C A C . . . . . . . . . . . CA . TTAA . A . T . ACACGAAACT CC T A . T A . . . . G . . . T G T . . . TCTCA A . . ATA . . TC . ATTTA . A GTTTC . A CTTT A TT ATCTGAAATGA G . . G . CCAAC . TT AT . . A . TG A . . A . G . . . T C TT C ACTTT . . A AT A TT T TT . . . . ATT .
blockSeqs : . . . . . A . . . G . . . . . . . . A . . . . . . T T . . . . T . CTA . G . G . ACACAAACT GA C T . A T . . . . C . . . A C G . . . ACTCA C . . TGG . . CA . ATTT . T GTTGG . A ATGT A AT ATCATGTTTTA A . . A . CC . TC GT . . A . TA A . . T . G . . . T . CC . TCAC . . T A . . . . . . . .
blockSeqs : . . A . T . ACAAAACT CC T T . T A . . . . T . . . T T G . . . ATCA C . . TGG . . TC . AGTA . C GTTG . . CTTT T AA A T . . . . CC . CT T . . A . TT A . . G . G . . .
blockSeqs : . AACT . T T . T C . . . . A . . . T T T . . . CA C . . TGG . . GA . TTT . . ATC . . CCTT . G A A . . . . . . . . . C . A T . . . . A . . .
blockSeqs : . . C A . T T . . . . A . . . A C . . . . GA . . . TTA . . C . T . . ATC . .
blockSeqs : . . . T . T . . . . .
blockSeqs : .
blockSeqCons : CAT************* G* TTCATCCT****** AA**************** C***** C** TCT*** CTTC TAGTC* ACAAAANT************** ANTCG***** TNG** ATTT********** TTCTTT*** ATCTGAATGA************** GT** G* CN T* CAGATTCTT************* *** A**
originalCons : TTTTTTTTTT-TTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCGGC--ACA-GTAT-CTC----ACACTCTTTC-AC-ACT-C-TTCATC---C-GCATA-ATTTATAG-TTGTA-ANA--------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC-CANGATTT--AATTGCAACANACT-C--T-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGG-AGTT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATG-TATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTT------AC-----A-C-AAACTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NG-TTTTT-C-TGTA--NATATGCANG-C-T-AA-AN-T---A-TTCCACAA-TG-TT-NTG-AT-T---TCANNAC---A---AT----T--T-A--AAA-CATAT-AGTT----N-ATTGTCT-CAACATTCT-T-T-T-ACANAATNTACAACAGTCA----TCTG----AA-TGA----ATTANTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTTGAAAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGNNTATATA--TT--TT------TTNAATATCAGTTNTC--GACAGACA----TA-TTC---TT-AGA--ANANTT--TG--A-----TTGNA--A-GTA-CTA--ATAATGCTATTAT-ATTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
finalCons : TTTTTTTTTT-TTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCAT-------------AT-ATTCAT---CAA-T-A--TA-TA--GCAAA--CA-TACA-TATT-AA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TTCG-C--ACA-GTAT-CTC----ACACTCTTTC-AC-ACTTTCATCCT------GCATA-ATTTATAG-TTGTAAA----------------TACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTTC-----AGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-A-TTTCAC--ANGATTT--AATTGCAACANACTTCT---CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGGTAGTC-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATG-TATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTTACAAAANT--------------GAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NG-TTTTT-C-TGTA--NATATGCANG-C-T-AAANTCG-----TTCCACAA-TG-TTTNG--AT-T---TCANNAC---AATTT----------A--AAA-CATAT-AGTT----N-ATTGTCT-CAACATTTTCTTT---ACANAATNTACAACAGTCATCTGAATGA--------------TTANTT--TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AA-TTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTTG-AAA-CAA-ACTTTAA--ATAACTC-NTTG-GCA-NNAAC-ATT----TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGGT-ATANATGGCAGATTCTT-------------TTNAATATC---TNTC--GACAGACA----TA-TTC---TT-AGA--ANANTT--TG--A-----TTGNA--A-GTA-CTA--ATAATGCTATTAT-ATTNCATTATACATA--CACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTTTCAGCCTCATCCAAGCTTTATCAAAACTGCATTTTAAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1111 2222222222222 111 111 11 11 11 1 11111 222222 1111 22222222222 1 444444444444444 1111111 222222222 11111111 11111 2 11 2222 11 2 33333 1111 1111 111111 44444444444444444 11111 1 111111 22222222222222 11 33333333333 111 55555555555555555555555555 111111 333333333333 1111 1111 1111111 1 11 11111 22222222222222 11 11 11111111111111111111111111111111111111111111111 55555555555555555555555555555555555555555555555555555555 111 2222 111 1
lowQualScore : 5 0000 8 7777777777777 111 000 5 33 5 55 0 33 5 5 5 0 22222 5 66 5 2 333333 66 888 5 5 66 5 5 2222 77777777777 6 77 5 0 2 888 55 111111111111111 0 4444444 1 555555555 999999 5 88888888 5 5 5 0 5 22222 1 5 77 3 1 2 5 5 33 6 888 1 5 1 1 77 1111 00 0 99 2 5 1 55555 0000 5 0000 5 55 5 999999999 4 55 66 66 111111 00000000000000000 1 44 77 2 4 3 22222 1 0 3 666 44 44 6 3 888 1 2 3 3 1 555555 2 3 99999 666 666 55 99 00000000000000 55 22 33333333333 3 444 4 44 11111111111111111111111111 55 1 8888 4 88 4 444444 4 000000000000 2222 8 1 4 22 1 4 4 1 4 4 55 55 55 66 99 777 1 0000 5 3 5555555 888 0 3333 88 11 55 777 77 5 5 5 5 5 55555 5 22222222222222 6 7 66 6 6 1 2 1 1 1 1 1 22 1 00000000000000000000000000000000000000000000000 1 33333333333333333333333333333333333333333333333333333333 6 1 666 0 0 0000 7 777 0 0 6 7
lowQualScore : . .... . ............. ... ... . .. . .. . .. . . . . ..... . .. . . ...... .. ... . . .. . . .... ........... . .. . . . ... .. ............... . ....... . ......... ...... . ........ . . . . . ..... . . .. . . . . . .. . ... . . . . .. .... .. . .. . . . ..... .... . .... . .. . ......... . .. .. .. ...... ................. . .. .. . . . ..... . . . ... .. .. . . ... . . . . . ...... . . ..... ... ... .. .. .............. .. .. ........... . ... . .. .......................... .. . .... . .. . ...... . ............ .... . . . .. . . . . . . .. .. .. .. .. ... . .... . . ....... ... . .... .. .. .. ... .. . . . . . ..... . .............. . . .. . . . . . . . . . .. . ............................................... . ........................................................ . . ... . . .... . ... . . . .
lowQualScore : 7 6666 1 5555555555555 444 000 7 66 7 77 7 66 7 7 7 0 55555 0 99 0 0 111111 99 888 0 0 99 7 7 1111 33333333333 7 99 0 4 6 888 44 222222222222222 9 4444444 4 000000000 999999 0 11111111 0 0 0 4 0 55555 0 7 99 9 4 9 7 7 66 6 666 0 7 3 0 44 6666 44 7 33 9 7 3 22222 6666 0 6666 0 44 0 999999999 4 33 11 33 555555 22222222222222222 6 66 99 3 2 3 33333 0 9 6 444 66 33 2 3 888 6 3 6 6 9 222222 8 6 99999 444 444 00 11 55555555555555 00 44 11111111111 6 111 9 77 99999999999999999999999999 55 0 4444 0 99 0 444444 0 333333333333 1111 0 0 0 11 4 0 0 4 0 0 55 55 55 00 55 000 4 6666 0 6 5555555 888 0 9999 44 66 44 444 11 6 0 0 0 0 33333 0 88888888888888 7 8 55 7 7 0 2 0 4 0 4 0 44 0 66666666666666666666666666666666666666666666666 0 66666666666666666666666666666666666666666666666666666666 7 0 555 2 2 0000 0 555 0 2 7 3
consensus : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCAT-------------AT-ATTCAT---CAA-TA--TA-TA--GCAAA--CA-T-ACA-TATTAA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TT-C-GC--ACA-GTAT-CTC----ACACTCTTTCA-C-A--CT---TT-CATCCT--GCA-TAATTTATAGT---TGTA-A---------------ATACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATG-T-----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-ATTTCA-C--ANGATTT--AATTGCAACANACTTCT-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGGTAGT-TTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATG-TATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTT------A-C-----A--AAANTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NGTTTTT-C-TGTAN--ATATGCANG-C-TAAAATC--GTTCCACAA-TGTT--T-GGAT---T---T--CANNAC---A---ATT--T-A--AAA-CATATAG-TT----N-ATTGTCTC-AACATTTTCTTTACANAATNTACAACAGTCA----TC-TG----AA-T------G-A--TTANT--T-TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AATTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTT-GAAA--CAA--ACTTTAA--ATAACTC-NTTG-GCA-NNAACA----TT-TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-NATANATGGAT-CGT--A-----T---TTT-T----T---TNAATA-----TCAGTTNTCGACAGACA----TA-TTC---TT-AGAANAN--TT--TG--A-----TTGNAA--GTA-CTA--ATAATGCTATTATA-TTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
Reference ( family-723 ) : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCAT-------------AT-ATTCAT---CAA-TA--TA-TA--GCAAA--CA-T-ACA-TATTAA-TA-----T-TTT--CCC-TATT------TTCC--ACA---TT-C-GC--ACA-GTAT-CTC----ACACTCTTTCA-C-A--CT---TT-CATCCT--GCA-TAATTTATAGT---TGTA-A---------------ATACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATG-T-----TCAGTCAAAAATATTTNTCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-ATTTCA-C--ANGATTT--AATTGCAACANACTTCT-CAACNTTGTATTT-GAACTTCAAGAAAGATAACGTAATAATCC-GTA-ATATTAGGTAGTCTTTG----TTT-T----GTT-TCGAACA-A-ATTAA---AAATG-TATTGTTTG-G--TATATAGAATTATAAAATTT-ATA------ACTTTGTT------A-C-----A--AAANTGAGAGGCCTTTCACCCAANATAAC-A--T--TTGNA-ACAT-T---AAAACCAATTCTTTC--TGA-NGTTTTT-C-TGTAN--ATATGCANG-C-TAAANTC--GTTCCACAA-TGTT--T-NGAT---T---T--CANNAC---A---ATT--T-A--AAA-CATATAG-TT----N-ATTGTCTC-AACATTTTCTTTACANAATNTACAACAGTCA----TC-TG----AA-T------G-A--TTANT--T-TTTTTT-AAGA-TAAT-ATTTNGCCGGCAGA-AA----T--T----TATGT--AA-AATTCTANATTGTAG-CCATTGAACTNGAGAAT-CAG-TGGTTG-TTTT-GAAA--CAA--ACTTTAA--ATAACTC-NTTG-GCA-NNAACA----TT-TCTT--C----CCA---GAT-GTACAGATAATTCNGTGTTCCAA-TTCCGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTNNTTTATC----AT-------ATTA-TATAAT-ACTTTGGAAC-AC-TTTTCATGCGACAGAACGGGTTCAAAGTAAAAAGG-TATANATGG---CAG--A-----T---TCT-T----T---TNAATA-----TC---TNTCGACAGACA----TA-TTC---TT-AGAANAN--TT--TG--A-----TTGNAA--GTA-CTA--ATAATGCTATTATA-TTNCATTATACAT--ACACTCGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAACAATAAA
gi|1 : TTTTTTTTTTTTTTTTTTTTTT-ATTA----TTTATTTCTTTTTCTCA--------------AT-ATTCAT---CAA-TA--TA-TA--GCAAA--CA-T-ACA-TATTAA-TA-----T-TTT--CCC-T-TT------TTCC--AAA---TT-CGGC--ACA-GTAT-CTC----ACACCCTTTCA-C-A--CTC--TT-CATCC---GCA-TAATTTATAAT---TGTA-AT--------------ATATAT-------ATATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATGTT-----TCAGTCAAAAA-ATTTATCCAATTTGCCC-AAAGTTTG--TCAAATTTG-AA-ATTTTACC--AAGATTT--AATTGCAACAAAC-TCT-CAACCTTGTATTT-GAA--GAAAGAAAGATAATGTAATAATCA-GTA-ATATTAGG-AGTTTTTG----TTT-T----GTT-TTGAACG-A-ATTAA---AAATGTTATTGTTTG-G--TATACAGAATTATAAAATTG-ATA------ACTTTATT------A-C-----AC-AAACTGAGAGGCCTTTCACCCAATATAAC-A--T--TTGTA-ATAT-T---AAAACCAATTCTTCG--TGA-TGTCTTT-C-TGTAA--ATATGCATG-C-TAAAGT---GTTCCAAAG-TGTT--GATAAT---T---T--CAGAAC---A---ATT--T-A--AAA-CATATAG-TT----G-ATTGTTTC-GAC--TTCTTTTACATAATGAACAACAGTTA----TC-TG----AA-T------GAA--TTATT--T-TTTCTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA----T--T----TAT-T--AG-AATTCGATATTGTAG-CCATTGGACTTGGGTATCCAGTTGGTTG-TTTTAAAAA--CAA--ACTTTAA--ATAACTC-ATTG-GCA-GTAACA----TT-TCTT--C----CCA---GAT-GTACAGATAATC---TGTTCCAA-TTTTGGA--TAGCTTTTGGAA-TT-G-G-ATTATTGTTTATTTATC----AT-------ATCA-TATAAC-ACTTTGGAAC-AT-TTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGGAAATAATTGG---TGT--A-----TACATTT-T----T---TCCATA-----TCAGTTCTTGACAGACA----TA-TTC---TTAAGAAAAT--TT--TG--A-----TTCTAGT-ATA-CTA--ATAATACTATTATA-TTGCATTGTACAT--ACACTGGCAAG---TCTAAATT---TTTGTGTAAAA-ATCTTGTAGCAATAAA
gi|10 : GGTAGG--TTG----TAT-T----GTT-TT--ACA-ACATTGATTTATATG-AATTGTTTG-G--TATATAAAGTTTTGAAATTT-ATT------ACTTTGTTTG----A-TTCT--A--ATAATG-GA---CAATCACCAAAAATAAT-A--T--TAAAATACAT-T---GAAACGAATTCAGTT--TGT-TGTTTTC-T-TGTAT--ATATGCA
gi|11 : tGCTATATATTTTT-CAACATTATAATT-CATTTTTAAAAAATTTATC-----AATCC-A-----ATTAGGT-----TTGGCATTTT-TCCACATT-TGAAACA-A-CT--A---AAATA-TACTGTTTTTG--AATATAGTATTACAAAGTTT-ATAACTAAAACTTTG----------------A--TAACTGAATGGTACTTCTCCAAAAATTAC-A--T--TTTTG-GCAT-T---AAAACCTATACGTTT--AGA-TGTAGTA-T-TATAT--ATATGTAGA-CTTAGATTA--TTTCCAAAA-TACT--T-GTACATAT---T--CA-CAC---A--------T-G--AAA-AATGTA---TGCAAA-ATAGTTTC-AACATTtaatgcatacttggctgttatcataaagttaacctactactttgtcatagtacacagaaataatttgtacagtattttcagagttgtgtccactaaaagaacagatatcattatccacaagtttatttctttttcaaagtaacttttaacagggagaattc
gi|12 : gaatttttaaacaTTT----TTTATTGCTTATTCT--T-------------AT-ATTCAT---CAA-TAAATA-TATTG-AAA--CA-T-ACA-TATCAG-TC-----TCTTT--TCT-TGTTGAA---CTTC--ACA---TT-C-GC--ACC-GTAT-CTCTTGAACGCTCTTTCA-C-A--CTACATT-CATCCT--ATA-TAGTT-ATAGT---TGTATAC--------------ATATAT-------ACAAAGT---------AC--T---T-GTACTTC--------AAATT-ATTCT-AA-TAATG-T-----TTAGTCAAAAATATTTTTCCAATTTGCCCTAAAGTTTGTTTCGAATT---AATATTCCA-CGTATGATTT---ATTGCGACAAA
gi|13 : TTTTTTTTTTTTTTTGTTTTTT-TTTT----TCTATTTTTCTTCTTCCT-------------TC-ATTC
gi|13 : tttttttttttttttttttttttttttttttttttttttctctatttcatcaaataaatataacaaaacaataactattaatgt-TA-----T-TTT--TCT-TCTTCCTTCATTCC--ACAAATTT-C-GC--ACA-GTAT-CTC----ACACTCTTCCAAC-A--CT---TTTCATCCT--GCA-TAAATTATAGT---TGAA-A---------------ATACAT-------ACATAGTA--------ACAAA---T-GTACTTC--------AA-TT-ATTCT---ATGATG-T-----TCAGTcacaaatttcgcacagtatctcacactcttccaacacttttcatcctgcataaattatagttgaaaatacatacatagtaacaaatgtacttcaattattctatgatgttcagtgc
gi|14 : tttttttttttttttttttttttttttttttttttttttctctatttcatcaaataaatataacaaaacaataactattaatgttttttttttttttttgtttttttttttcTTTTTTCACTTTTTTTTTTT-ATTA----TTTA-TTCTTTTTCTCAT-------------AT-A---GC---CAA-T-------------AA--CA-T-ACAGTATTAATTATTTTTT-TTT--TTC-TATT------TTCC---CA---TTCC-GCTAACA-GTATCCTC----ACACTTTTTTG-CTATTCT---TT-CATCCTGCGCA-TAATCAGCAGTTTATATA-A---------------ATATCC-------AAATAATAAAGGTAAAAC--AATTT-TTACTCCCTTTTCTAAA-TT-ATTCTAAAATGATG-T-----TCAGTCAAAAATATTTATCCAAgc
gi|15 : cacaAATAT--GT--TG--ACA---TTGCAA--G-A---A--ATAATGCTATTATA-TTTCATTATTCAT---CAC
gi|16 : acaattccattctccccttagtggttacttgctgtacagcaatttataattgaacagaaaaaagaaaatgataaacataattctgtttagttgatatacatattagtcaaaaatatttttcaatctcatccaagctttatcaaaactAACTCTTTC--TGA-AGTTTTTTC-TGTAATAATATGAAAGAC-TCAAATCTAATTCC-CAA-TGTTCGT-GGGT---T---TATCAT-AC---ATGAAGT--A-A--AGA-CATGGAAATT----C-ATT-TCTCCAACATTATTAGTACAAAATCTACAACAGTC--------------------------A--TTATT--T-TTTTTTCAAGT-CAATGATTCTG
gi|17 : TTTTTGTTTTGTTTT-ATTA----TTTATT-CTTTTTCTCATGATTGGTACGTATATGATTTAT---ATT-TA--TA-TA--GCAAAA-CACT-ACA-TATTAA-TA-----T-TTT--TCT-TATT------TTCC--ACA---TT-C-GC--ACA-GTAT-CTC----ACACT------------CT---TT-CATCCT--GCA-TAA-TTATAGT---TGT--A---------------ATACAT-------tg
gi|18 : ctgtaATA-TATAGATTA-G--TATATAAAGTTATGAAATTA-ATA------ACTTTGTTTTTATAA-C-----A--AAAA-GAAA----TTTCA-CCAAGA-AAC-T--A--CTACACACAT-T---AAAAACGACTCTTTC--TGA-AGTTTTT-
gi|19 : tactccgatgaaagagactttgt-TAATT-ATAGT---TGTA-ATACATACATACATATATACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TTTATTCT-AAATGATG-T-----TC--TCAAAAATATTTTTCCAATTTGCCC-AAAATTTG--TCAAA---GAAA-ATTTCA-C--ATGATTT--
gi|2 : TTTTT-ATCA----TTTATTCTTTTTCCTCAT-------------AT---TCAT---CAA-TA--TA-TATAGCAAAAACA-T-ACA-TATTAA-TA-----T-TT---CCA-TATT------TTCC--ACA---TT-C-GC--ACATATAT-CTC----ACACTCCTTCA-C---------------CCT--GCA-TAATT-ATAGT---TGTT-A---------------ATA-------------TAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATG-T-----TCAGTCAAAAATATTTATCCAATTTGCCC-AAAGTTTA--TCAAATTTGAAA-ATTTCA-CA-AAGATTT--AATTGCAACAAACTTCT-CCACCTTGTATTT-GAA----AGAAAAGATAATGTAATAATCCAGTA-ATATTAGG-AGT-TTTG----TTT-T----GTT-TTGAACACA-ATTAA---AAATG-TATTGTTTG-G--TATACAGAATTATAAACTTGAATA------CATTTATT------A-C-----A--AAACTGAGAGGCCTTTCACCCAATATAAC-ATGT--CTGTA-ATAT-T---AAAACCATTTCTTCCGTTGGTTGCTCTT-C-TGTAA--ATATGCATG-C-TAAGAGT--GTTCCAAAG-TGTT--A-TAAT---T---T--CAAGAA---A---ATT--TAA--AAA-CATAT-G-TTG---G-ATTGTTTC-AAC---TTCTTTACATAATGAACAACAGTTA----TC-TGA---AA-T------G-A---CATT--TATTTTTT-AAGA-TAAT-ATTT-GTTGGCAAATAA----T--T----AATTT--AAGAATTCGATATTGTAG-CCATTGGACTTGGGTAT-CAG-TGGTTG-TTTT-AAAA--CAA--ACTTTAAACATAACTC-ATTG-GCAGAAAACA----TT-TCTT--T----CCA---GATAGTACAGA-ATTTCTGTGTTCCAATTTCTGGA--TAGCTTTTGGAA-TT-GAG-ATT-TTGTTATTTTATC----AT-------AATATTATAA--ACTTTGGAAC-ACATTTTCATTCAACAGTATGGGTTCAAAGTAAAAAGG-AATAAATGG---TGT--ATATACT---TTT-T----T---TCCATATCAGTTC---TCTTGACAGACA----TA-TTC---TT-A-AAGAA--TT--AG--A-----T--ATA--GTA-CTA--ATAATACTATTATA-TTGCATTGTAC-T--ACACTTGCAAG---TCTAAATT---TTTGTGAAAAACATCTTGT-ATAATAAA
gi|20 : TTTTTTTTTTTTTTTTTTTTTTAATTAATATCTTATTTCTTTTTC---T-------------AT-ATTCAT---CAATTA--TAGTA--GCAAA---A-C-ATA-TATTAA-TA-----T-TTT--CCCATATT------TGCCAAATA---TT-C-GC--A-----GT-TTC----A-ACCCTCTCa
gi|21 : CCAACAGA-AA----TGAT----TATGTGTAA-AATTTTAAACTGTAA-CCATTAAGCAGAATAAT-CAG-TAGTTG-TTTT-GAAA--CAA--ATTTTAA--A
gi|22 : ttgttacttcgccattttatatTTTTTTTTTTTTA-ATTA----TTTATT-CTTTTTCTCAT-------------AT---TCATGTACAA-TAA-TA-TA--GCAAA--CA-TTACA-TCTTAAATA-----T-TTTTCCCC-TATT------TTCC--ACA---TT-C-GC--AC
gi|24 : TT------A-C-----AC-AAACTGACAGGTCTTTCACCCAAAATAAC-A--T--TTG
gi|3 : TCAAAAATGTTTTTCCACAATGACC-ATAATTTT--TCAAACCTATAA-AT--CA-C--A--ATTTTGAATAGCAATATGCTTTT-CAATGTTAAATTT-GAATTTCAAGTGAGATAA-----TAACCC-ATATATATTTGGTAGT--TTG----TTC-T----GTT-TCAGACT-A-GAAAA---AAATA-TATTGTTTT-G--TGTATAGGATCAAAAAATTT-AGC------ACTTTGTT------T-CTTCCTG--TGAGTGGGAGA----TCACC--AAATAAC-A--CAATTGGC-AAGT-T---AAATCCAACTCTCTC--TTT-GGTTTTTGCATATAT--ATATGTAAA-C-TAAAACT--ACTCCATAA-TGAC--A-TAAT---T---T--TTTCAC---A---ATCGAT-A--AAA--ATAT-G-TT----GTATAGTTTC-GACATCTTGTTTACAAAAGGTACAGGAATCA--------G----AA-CTTACAAG-A--TTGAT--T-TTCTTT-AA-A-TAGT-AATTAACAGGAAGA-A-----T--TCTAATATGA--AA-AATTCTGTATTGTAG-CCACTGAGCTGTAGAGT-CAG-TAGTTA-TTTT-GAAA--TAA--ACTTTAA--ATACATC-TTT---CA-CCAACAATTATTGTATT--C----TCT---GAG-G---AGATAATT-AGAGTTCCA---CCTGGA--AA----TTG-AA-TTAG-G-ATCAGTATAACTTT--C----AT--------TCA-TATGA---CTTTTGTAC-AT-TTTTCATATTATAGAATTGGTTCATAGTAAAATGG-TATAGAAGG--------------------T-T----T---TAAATA-----CTAGTTGTTGACG--CAATTCTA-TTTAAATT-AGGACACAGTTCATA--A-----TTGAAATAGCA-CTT--ATAACGCT-TGATGGTTGC-TAATACATACACACTCAAAAGTTATCTA---T---CTTGTTTTAAA-ACATT-TAACAAt
gi|4 : aTTG--AATTGCAGCATATTTTT-CCACAGAATATTTTAAACTTCAA-----ATGACATAGTAATCCTATA-AGGTTAGGT--TCTTTA----CCTCT----GCAATCAGACA-A-AT-AA---AGATG-TATTGTTTA-ACATATATAAAATTATAAAGTTT-ATA------GCTTTGTTT-----A-T-----A--ATAGACAGTGGAATTTCACCTAATATAAT-A--T--T-GAC-ACAT-T---AAAACCAACTCTTTC--TGA-CGATTTT-C-TGTAT--ATATGGAGA-C-TCAAATC--ATTCCACAA-TGTT--T-GGGT---T---T--TAAAAC---ATG-AAG--T-A--AAG--ACATGG-AT----C-ATTGTCTC-AACA--TTATGTACAAAATCTACAACAGTCATTAGTT-TT----AA-C--------A--TTAAT--T-TTTTTC-AAG--TAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AA-TCTAAACTGTAA-CCATTGAAC-AGAGAAT-CAG-TAGTTG-TTTT-GAAA--CAA--ATTTTAA--AT-ACTC-CTTGTACT-TGAA-A----TA-TC-A--C----CCACTCTAT-ATGGAGATAATTCAGTCTTCCAC-TT---------GCCCATGGAAGTT-G-G-GATATTTCTTTTTTATTCAAAAT-------ATTG-TA-AATAATTTTAGAACAAT-TTTTCATGCAACAAAACAGGTTCAAAAAATACAGG-CATACATGGATTAAT--A-----T---TTTGTTTAAT---TGAATG-----TC---TATCAATAGATA----TACTTC---TT-A-AATAT--GT--TGACA-----TTGCAA--G-A---A--ATAATGCTATTATA-TTTCATTATTCAT---CACgacaaaaa
gi|5 : gtttTACAT-------ACATAGT---------AC--A---T-GTACTTC--------AA-TT-ATTCT-AAATGATG-T-----CTAGTCAAAAATATTTATCCAATTTGCCC-GAAGTTTG--TCAAATTTG-AA-ATTTCA-C--AAGATTT--TATTGCAACAAACTTCTTCAACCTTGTATTT-AAA-----AGAAAGATAATGTAATAATCCAGTA-ATATTAGG-AGT-TTTG----TTT-T----GTT-TTGAACA-A--TTAA---AA-TG-TATTGTTTG-G--TATAAAGAATTATAAAATTG-ATA------ACT---------------------------GAGAGGCCTTTCACCCAATATAACCA--T--TTGTA-ATAT-T---AAT-CCAGTTCTTCG--TGA-TGTCTTT-C-TGTAA--ATAGGCATG-C-TAAGAGT--GTTCCAAAAGTGTT--A-TAAT---T---T--CAGAAC---A---ATT--T-A--AAAACATAT-G-TT----G-GATGTTTC-AAC---TTCTTTACATAATG-ACA-CAGTTA----TC-TG----AAAT------G-A--C-ATT--TATTTTTT-AAGA-TAAT-ATTTTGTTGGCAGA-AA-----------------------ATTCTAT----TAGGCCATTGGACTTGGGTAT-CAG-TGGTTA-TTTT-AAAAAACAA--ACTTTAA--ATAACTC-ATTG-GCA-GAAACA----TT-TCTT--T----CCA---GAT-GTACAGATAATTCTGTGTTCCAA-TTTTGGATGTAGCTTTTGGAA-TG-A-A-ATTATTG--CATTTAagttttgataaagcttggatgagattgaaaaatatttt
gi|6 : T--GCAGCAATTTATAAT---TTTA-A---------------AAACAGCAAAAGAAAATAAT---------AA--A---TAGTA-TTC------------T-ATT-T-AGTTGATA-TACGAATCAGTCAAAAATATTTTTCAACCTCATCC-AGGCTTTA--TCAAAATTGTGC-ATTTTA-T--GTCATTG--AATTGCAGCATATTTCT-CCACAAGATATTT-CAACTTCAA-----ATGACATAATAATCCTATA-AGGTTAGGT--TCTTTA----CTC-T----GCA-TCAAACA-A-ATTTT---TGATG-TATTGTTTA-A--CATATAAAATTATAAAGTTT-ATA------GCTTTGTT------ATC-----A--ATAGACAGTGGGATTTCACCTAATATAAT-A--T--TTGAC-ACAT-TTAAAAAACCAACTCTTTC--TGA-AGTTTTT-C-TGTAT--A----------------TC--ATTCCACAA-TGTT--T-GGGT---T---T--TATCACATGA---AGT--A-A--AGA-CATGTA---T----C-ATTGTCTC-AACATTATTTGTACAAAATCTACAACAGTC--------------------------A--TTAG-------TTTT-AACATTAAT-AT----CCAACAGG-AATGATT--C----TGTGT--AA-AATTCTAAAGTGCAA-CCATTGAACAGAAGAAT-CAG-TAGTTG-TTTT-GAAA--CAA--ATTTTAA--ATActgta
gi|7 : cacttccttctcgcagtggttacttgctacttgctgTTA-C-TGTA----TATGTAGG-C-TCATCTC--ACCTCACAA-TGTT--T-GGAT---TATAT--CACAAC---A----TT--T-AGTAAA-AATATGT-TT----C-ATTGTCTC-AACATTTTCTTGACA-AATTTAGGACAATCG----TA-TGTTTTAA-T--------A--TTAAT--C-TTTTTC-AGG--CAAT-ATCCAACAGTAAGA-AA----T--C----TATAT--AA-AATTATAAATTGCAA-CCATTGAACTGAAAAGT-CA----GTTG-TTTT-GAAA--CAA--ATTTTAA--ACACATC-TTGA-ACT-AAAATA----TC-ACATACT----CCA---TATGGT---GTTAATTCAGTCTTCCAT-TTCCTTA--AAGC------AG-TT-G-G-GCTATC-CTCATTT-TC----ATTCAAAGAATTA-TAAATT-ATTTAGGATC-AC-TGTTCATGTGGCATAACATTTTCAAAAGATATAGG-TATACATGGAT-CAGGAA-----T---TCG-T----TAGCTAAATC-----TC---TATCAATAGATA------------------AACAG--TT--TA--AGCGTTTTGAAA---TAGCTGTTTTAATACTATTATA-TTTCATTACACAT--AC-CTCATAG-------AGATTGTATGTGCGTAGAA-ATTT
gi|8 : ACCTAA--TAAG-A--TA-CTGCATACAT-T---AAAACCGATTCTTTC--TAA-ACTTTGT-C-TTTAT--CTGTGTAGG-A-TCAACTC--AATCCACAA-TGTC--T-GGAT---T---T--TATCACATGA---ATT-------AAA-TATATA---T----C-ATTGTCTC-AACATTTTCTTGACAAAATATATAACAATCA----TCATG----TT-T------T-A--TTATTTAT-CTTTTC-CAGG-TAAT-ATCCAA-CAGCAAG-GA----T--TC---TATGTA-AA-AATTCTAAATTGCAA-CCATTTAACTAAAGAGT-CAG-CTCTTGCTTTT-GAAA--AAAATATTTTG-----AACCCATTTT-GAA-TTAAAA----TA-TCAC--CTACTCCA---TAT-GAAT--TTAATCCAGTCTTCCAT-TTCCTTA--TAGCAGTTG-----T-G-GTATCATCATT--TTCAT------T-------ACTA-TAAAAT-ACTTTGGAAC-AC-TTTTCATGTGGCATAAatccaaggctaaaaaa
gi|9 : A------ACTTTATC------A-C-----ACGAAACTGATAGGCCTTTCACCCAAAATAAT-AA-G--TTATA-TCATAT---AAAACCA-TTTTTTG--TGA-TGTCTTT-C-TGTAA--ATATGCATG-C-TAAGA---------------GTT--T-TATT---T---T--CAGAAC---A---ATT--T-A--AAAACATAT-G-TT----GGATTGTTTC-AAC---TTCCTTACGTAATAAAGAACAGTCA----TC-TG----AAAT------G-ACATTTAT--T-TCCTTT-AAGA-TAAT-ATTTTGTTGGCAGA-GA----C--T----TAT-T--AAGAATTTGACATTGTAG-CCACTGAACTTGGGTAT-CAG-TGGTTG-TTTT-AAAA--CAA--ACTTT-A--ATAACTC-TTTC-GTA-CCAACA----TT-ACTT--T----CCA---GAT-GTACAGATAATTATGTGTTCCAA-TATTGGA--TAGCTTTGAGAA-TG-A-G-ATTATTaattttccagaaatatagg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTTTCAGCCTCATCCAAGCTTTATCAAAACTGCATTTTAAG