lowQualScore : 2222222222222222222222222222222
lowQualScore : 3333 333333333333333333333333333333333333 4444444444444444444444444444444 111
lowQualScore : 0000 2 1 1 555555 9 1 000000000000000000000000000000000000 77 666666 1 5555 2 2 8888888888888888888888888888888 777 5 777777 1 2 5555
lowQualScore : .... . . . ...... . . .................................... .. ...... . .... . . ............................... ... . ...... . . ....
lowQualScore : 6666 0 8 8 000000 7 9 222222222222222222222222222222222222 77 444444 6 3333 5 5 6666666666666666666666666666666 888 4 777777 1 7 7777
consensus : AGAATATTACA-TG-CT-AA-AAT-CCA------TATCGCATGGCATA-TCAGCC---C-G-AG-T--G-GCCCCA-T----AT-------CAGCCCNAGG------GCTG----A-T-ATGGGGCCGGANGGCCGA-------------TAT--GCCATTGCGATA------TGGATTTTAGC-ATG----TAATATTC
Reference ( gi|1 ) : AGAATATTACA-T--CT-AA-AAT-CCA------TATCGCAAGGCATA-TCAGCC---C-G-AG-T--A-GCCCCA-T----AC-------CAGCCCTAGG------GTTG----A-T-ATGGGNNNNNNNNNNNNNNNNNNNNNNNNNCTATGGGCCATTGCAATA------TGGATTTTAGC-ATG----TAATATTC
gi|2 : AGAATATTACG-G--CT-AA-A-T-CCAATATGATATCGCATGGCATA-TCGGCC---C-G-AGTT--A-GCCCCATT----AT-------CAGCC--AAG------TTTG----ATT-ATGGAGCCTGAGGGCTGA-------------TAT--GCC-TTGCGATA------TGGATTTTAGC-ATG----TAATAT
gi|4 : agAGAATAGTACA-TG-CT-AA-AAT-CTA------TATCACATGGCATG-TCAGCC---C-G-AA-T--G-GTCCAA-T----AT-------CAATCCGAGG------ACGG----A-T-ATG
gi|5 : taatactatatgcttaaatccatatcacatgaAGAATATTATACT--CT-AA-ATT-CCG------AATCGCATGGCATG-TCAGCC--------G-TCCG-GCCCCA-T----AT-------CAACCCTCGG------GCTG----A-T-ATtt
gi|5 : gagaatattacatgctaaatttcatatagcatggtAGAATATTACA-TG-CT-AA-ATT-TCA------TATAGCATGGTATA-TCAGCC---C-G-------------------------------------AGG------GTTG----A-T-ATGGGGCCGGACGGCTGACAT---------------GCCA-TGCGATT------CGGAATTTAGA-GTA----TAATATTC
gi|12 : gAGGATATTGCA-TG-CT-AA-AAT-TCA------TAT-----GTCATA-TCAGCC---G-G-AG-T--G-Gt
gi|19 : gactgattAGAATATTACA-TG-TT-AA-ATT-CCA------TATCGCAAGGttata
gi|15 : AGAATATTACA-T--GTCAA-AAT-ACA------AATCATAATTCATG-TCAGCC---C-
gi|13 : tttagaatcagaAGAATAGTACA-TG-CT-AAAAAT-CCT------TATTATATGTCACA-TCAGTC---T-G-AG-T--
gi|7 : GAATATTACA-TA-CT-AA-AAT-CCA------TATTGCAAGGCTTA-TCAGCC---T-C-AG------GCCCCA-T----AT-------CAGTCCGAGGGCCGAAGCTG----A-T-ATGctctttat
gi|9 : aaaatccatatcgcatggGAATTTTACA-TG-CT-AA-A----TA------TATTCAAAGGCATAATCAGCCGCTC-G-GG--------CCAA-T----AT-------CAACCTTCGG------GCTG----A-T-ATGGGcatt
gi|4 : gagttgcAATACTATA-TG-CT-TA-AAT-CCA------TATCACATGACATA-T---------------------------------C-------C-GTCCTCGG------ATTG----A-T-ATTGGACCATTCGGGCTGACAT--------------GCCAT-GTGATA------TAGATTTTAGC-ATG----TACTATTC
gi|10 : tAATATTACA-TG-CT-AA-AAT-CCA------TAACGCAAGGCATA-TCAACC---T-ACAG------GCCT---------T-------CGGCCCTTGG------GCTG----A-T-ATGGGttt
gi|3 : AATATTATG----CT-AA-AAT-CCA------TACCGCATGGCATA-TCAGCC---C-T-CG----A-ACTCAA-T----AT-------CTACCTTCGA------GCTGATCAA-T-ATGGG
gi|2 : atattacatatcgcatgacatatcagactgagtggtATATTACA-TG-CT-AA-AAT-CCA------TATCGCAAGGCATA-TCAGCC---CTC-AG------GCTCCA-TA---AT-------CAAACTT--G------GCTG----A-TAATGGGGCTAACTCGGGCCGA-----------TAT--GCCA-TGCGATATCATATTGGA-TTTAGC--CG----TAATATTCaatattc
gi|20 : agaATATTACA-TG-CT-AA-AAT-CCA------TATAGCATGG
gi|16 : ATATTAAAAG--CC-AA-AAT-CCA------TATAGCAGAGCACA-TTAAAC---C-A-AG-T--G-ACC
gi|18 : ATTACA-TTGCT-AA-AAT-CCA------TATCGCATGGCATA-TCatt
gi|8 : TACA-TG-CT-AA-AAT-CCA------TATCGCATGGCATA-TCAGCC---C-A-AG-T--G-GCCCCA-T----AT-------CAGCCCGAGA------GCCG----A-C-ATc
gi|7 : gctccgatattctg-AA-AAT-CCA------TATCGCATGGCATA-TCAGCT---T--------------------------------CGGCCCTCGG------ACTG----A-T-ATGGGGCCTGAGGCTG----------------ATAAGCC-TTGCAATA------TGGATTTTAGT-ATG----TAATATTC
gi|17 : -AA-AAT-CCA------TATCGCATGGCATA-TCAGCCAT-C-G-AT-C--AGGCCCCA-T----GC-------catt
gi|14 : atA-AAT-CCA------TATCATATGCCATA-ACAGCC---C-A-AG-T--G-GACCCA-T----AT-------CAGCCCAAGG------G
gi|11 : cggA-AATACCA------TATCACATGGCATA-TCAGCC---T-G-AG-C--G-G-CCCA-T----ATTGATGTACAGCCCGAGG------GCT
gi|3 : CA------TATCGCATGACATA-TCAGAC---T-G-AG-T--G-GTCCCA-TATTGAT-------CAGCTCGAAG------GTAG----A-T-ATTGAGTTCGAGGGCTGA-------------TAT--GCCA-TGCGGTA------TGGATTTTAGC-ATAATATTAATATTC
gi|9 : atatta-G-AG-T--T-GCCCCA-T----AT-------CAGCCCGAAG------GTTG----A-T-ATTGGCCCGAGCGGCTGAT------------TAT--GCCTTTG-AATA------TA---TTTAGC-ATG----TAAAATTC
gi|10 : CCCA-T----AT-------CAGCCCAAGG------GCCG----A-----AGGCCTGTAGGTTGA--------------TATG--CC-TTGCGTTA------TGGATTTTAGC-ATG----TAATATT
gi|8 : A-T----GT-------CGGCTCTCGG------GCTG----A-T-ATGGGGCCACTTGGGCTGA------------TATG--CCAT-GCGATA------TGGATTTTAGC-ATG----TA
gi|4 : gctccgatattctgTATG--TCAT-GTGATA------TGGATTTAAGC-ATA----TAGTATT
gi|18 : tGCCAT-GCGATA------TGGATTTTAGCAATG----TAATtccgtcctcggattgatattggaccattcgggctgacatgccatgtgatatagattttagcatgtactattcttt
gi|5 : gatatCCAT-GCTATA------TGAAATTTAGC-ATG----TAATATTCc
gi|20 : gaCCAT-GCTATA------TGGATTTTAGC-ATG----TAATATtatatcagcccgagggttgatatggggccggacggctgacatgccatgcgattcggaatttagagtataatattct
gi|19 : TTGCGATA------TGGAATTTAAC-ATG----TAATATTC
gi|12 : ccATA------TGAATTTTAGC-ATG----CAATATCCt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): AATACAATACTACATGATAAATTCCGTATCTTATGATATAAGCGCATACCAACTATACGGGCTGATATGACATATGAAGGTTTTAATATTCACTATTTGACACTTACAT
Alignments
lowQualScore : 1111111111111 2222222222222 11
lowQualScore : 3 2 2 666666 444 66 2 0000000000000 3 33 4 1 4 5 6 8888888888888 66 77 9999
lowQualScore : . . . ...... ... .. . ............. . .. . . . . . ............. .. .. ....
lowQualScore : 3 5 5 888888 555 33 1 9999999999999 3 66 0 1 1 3 4 9999999999999 11 66 4444
consensus : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAGT--GGCCCCAT----AT-------CAGCCCGA-GGGCCGAT-ATGGGGCCNGANGGCTGA-------------TAT--GCCATTGCGATATGGATTTTAGCATG----TAATATTC
Reference ( family-722 ) : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAGT--GGCCCCAT----AT-------CAGCCCNA-GGGCTGAT-ATGGGGCCGGANGGCCGA-------------TAT--GCCATTGCGATATGGATTTTAGCATG----TAATATTC
gi|1 : AGAATATTACAT--CTAAAA-T-CCA------TATCGCAAGGCATATCAGCC--CGAGT--AGCCCCAT----AC-------CAGCCCTA-GGGTTGAT-ATGGGNNNNNNNNNNNNNNNNNNNNNNNNNCTATGGGCCATTGCAATATGGATTTTAGCATG----TAATATTC
gi|10 : CCCAT----AT-------CAGCCCAA-GGGCCGA-----AGGCCTGTAGGTTGA-------------TAT--GCC-TTGCGTTATGGATTTTAGCATG----TAATATT
gi|11 : AAA-TACCA------TATCACATGGCATATCAGCC--TGAGC--GG-CCCAT----ATTGATGTACAGCCCGA-GGGCT
gi|12 : AGGATATTGCAT-GCTAAAA-T-TCA------T-----ATGTCATATCAGCC--GGAGT--GG
gi|13 : gactgattAGAATAGTACAT-GCTAAAAAT-CCT------TATTATATGTCACATCAGTC--TGAGT--ttata
gi|14 : AAA-T-CCA------TATCATATGCCATAACAGCC--CAAGT--GGACCCAT----AT-------CAGCCCAA-GGGCCGctctttat
gi|15 : CAGAGGGCTGA-------------CAT--GA-ATTATGATTTGTATTTTGACATG----TAATATTC
gi|16 : tttagaatATATTAAAA-GCCAAAA-T-CCA------TATAGCAGAGCACATTAAAC--CAAGT--GACCt
gi|17 : AAAA-T-CCA------TATCGCATGGCATATCAGCCATCGA-TCAGGCCCCAT----att
gi|18 : atgcATTACATTGCTAAAA-T-CCA------TATCGCATGGCATATC
gi|19 : AGAATATTACAT-GTTAAAT-T-CCA------TATCGCAAGGc
gi|2 : AGAATATTACG--GCTAAA--T-CCAATATGATATCGCATGGCATATCGGCC--CGAGTT-AGCCCCATT---AT-------CAGCC--A-AGTTTGATTATGGAGCCTGAGGGCTGA-------------TAT--GCC-TTGCGATATGGATTTTAGCATG----TAATAT
gi|20 : agATATTACAT-GCTAAAA-T-CCA------TATAGCATGG
gi|3 : CA------TATCGCATGACATATCAGAC--TGAGT--GGTCCCATATTGAT-------CAGCTCGA-AGGTAGAT-ATTGAGTTCGAGGGCTGA-------------TAT--GCCA-TGCGGTATGGATTTTAGCATAATATTAATATTC
gi|4 : atattaAGAATAGTACAT-GCTAAAA-T-CTA------TATCACATGGCATGTCAGCC--CGAAT--GGTCCAAT----AT-------CAATCCGA------------------GGACG---GA-------------TAT--GTCA-TGTGATATGGATTTAAGCATA----TAGTATT
gi|5 : tAGAATATTACAT-GCTAAAT-T-TCA------TATAGCATGGTATATCAGCC--CGAG----------------------------------GGTTGAT-ATGGGGCCGGACGGCTGA-------------CAT--GCCA-TGCGATTCGGAATTTAGAGTA----TAATATTCtt
gi|6 : gAATACTACAT-GATAAAT-T-CCG------TATCTTATG--ATATAAGC-----------GC---AT----AC-------CAACTATACGGGCTGAT-ATGt
gi|7 : aatacAAAA-T-CCA------TATCGCATGGCATATCAGCT----------------------T-------CGGCCCTC-GGACTGAT-ATGGGGCCTGA-GGCTGA-------------TAA--GCC-TTGCAATATGGATTTTAGTATG----TAATATTCacatatgaaggttttaatattcactatttgacacttacat
gi|8 : TACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CAAGT--GGCCCCAT----AT-------CAGCCCGA-GAGCCGAC-ATcatt
gi|9 : gctccgatattctgGAGT--TGCCCCAT----AT-------CAGCCCGA-AGGTTGAT-ATTGGCCCGAGCGGCTGAT------------TAT--GCCTTTG-AATATA---TTTAGCATG----TAAAATTC
Alignments
lowQualScore : 1111111 22222222222222 2222222222222 11
lowQualScore : 3 2 2 777777 44 66 1 9999 0000000 3 11 55555555555555 6666666666666 55 44 0 9999
lowQualScore : . . . ...... .. .. . .... ....... . .. .............. ............. .. .. . ....
lowQualScore : 3 7 7 222222 22 88 0 6666 8888888 3 99 00000000000000 0000000000000 55 00 7 4444
consensus : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAGT--GGCCCCAT----AT-------CAGCCCG-AGGGCCGAT-AT-GGGCCNGANGGCTGA-------------TAT--GCCATTGCGATATGGATTTTAGCATG----TAATATTC
Reference ( family-722 ) : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAGT--GGCCCCAT----AT-------CAGCCCG-AGGGCCGAT-ATGGGGCCNGANGGCTGA-------------TAT--GCCATTGCGATATGGATTTTAGCATG----TAATATTC
gi|1 : AGAATATTACAT--CTAAAA-T-CCA------TATCGCAAGGCATATCAGCC--CGAGT--AGCCCCAT----AC-------CAGCCCT-AGGGTTGAT-ATGGGNNNNNNNNNNNNNNNNNNNNNNNNNCTATGGGCCATTGCAATATGGATTTTAGCATG----TAATATTC
gi|10 : CCCAT----AT-------CAGCCCA-AGGGCCGA-----AGGCCTGTAGGTTGA-------------TAT--GCC-TTGCGTTATGGATTTTAGCATG----TAATATT
gi|11 : AAA-TACCA------TATCACATGGCATATCAGCC--TGAGC--GG-CCCAT----ATTGATGTACAGCCCG-AGGGC
gi|12 : AGGATATTGCAT-GCTAAAA-T-TCA------T-----ATGTCATATCAGCC--GGAGT--GGt
gi|13 : gactgattAGAATAGTACAT-GCTAAAAAT-CCT------TATTATATGTCACATCAGTC--TGAGT--ttata
gi|14 : AAA-T-CCA------TATCATATGCCATAACAGCC--CAAGT--GGACCCAT----AT-------CAGCCCA-AGGGCCGctctttat
gi|15 : CAGAGGGCTGA-------------CAT--GA-ATTATGATTTGTATTTTGACATG----TAATATTC
gi|16 : tttagaatATATTAAAA-GCCAAAA-T-CCA------TATAGCAGAGCACATTAAAC--CAAGT--GACCt
gi|17 : AAAA-T-CCA------TATCGCATGGCATATCAGCCATCGA-TCAGGCCCCAT----att
gi|18 : atgcATTACATTGCTAAAA-T-CCA------TATCGCATGGCATATC
gi|19 : AGAATATTACAT-GTTAAAT-T-CCA------TATCGCAAGGc
gi|2 : AGAATATTACG--GCTAAA--T-CCAATATGATATCGCATGGCATATCGGCC--CGAGTT-AGCCCCATT---AT-------CAGCC---AAGTTTGATTATGGAGCCTGAGGGCTGA-------------TAT--GCC-TTGCGATATGGATTTTAGCATG----TAATAT
gi|20 : agATATTACAT-GCTAAAA-T-CCA------TATAGCATGG
gi|3 : CA------TATCGCATGACATATCAGAC--TGAGT--GGTCCCATATTGAT-------CAGCTCG-AAGGTAGAT-ATTGAGTTCGAGGGCTGA-------------TAT--GCCA-TGCGGTATGGATTTTAGCATAATATTAATATTC
gi|4 : atattaAGAATAGTACAT-GCTAAAA-T-CTA------TATCACATGGCATGTCAGCC--CGAAT--GGTCCAAT----AT-------CAATCCG-AG-----------------GACG---GA-------------TAT--GTCA-TGTGATATGGATTTAAGCATA----TAGTATT
gi|5 : tAGAATATTACAT-GCTAAAT-T-TCA------TATAGCATGGTATAT-----------------------------------CAGCCCG-AGGGTTGAT-ATGGGGCCGGACGGCTGA-------------CAT--GCCA-TGCGATTCGGAATTTAGAGTA----TAATATTCtt
gi|6 : gCAT----AT-------CAGCCCGTATAGTTGGT-AT---GC------GCTTA-------------TAT----CA-TAAGATACGGAATTTATCATG----TAGTATTt
gi|7 : aatacGAATATTACAT-ACTAAAA-T-CCA------TATTGCAAGGCTTATCAGCC--TCAG----GCCCCAT----AT-------CAGTCCG-AGGGCCGA--------------AGCTGA-------------TAT--GCCAT-GCGATATGGATTTTacatatgaaggttttaatattcactatttgacacttacat
gi|8 : TACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CAAGT--GGCCCCAT----AT-------CAGCCCG-AGAGCCGAC-ATcatt
gi|9 : gctccgatattctgGAGT--TGCCCCAT----AT-------CAGCCCG-AAGGTTGAT-ATTGGCCCGAGCGGCTGAT------------TAT--GCCTTTG-AATATA---TTTAGCATG----TAAAATTC
Alignments
lowQualScore : 1111111 22222222222222222 22222222222222 11
lowQualScore : 3 2 2 777777 44 22 33 1 3 6666 0000000 3 11 88888888888888888 77777777777777 55 88 0 9999
lowQualScore : . . . ...... .. .. .. . . .... ....... . .. ................. .............. .. .. . ....
lowQualScore : 3 7 7 222222 22 99 99 0 1 5555 8888888 3 99 66666666666666666 55555555555555 55 99 7 4444
consensus : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAG-T--GGCCCCA-T----AT-------CAGCCCG-AGGGCCGA-TA-T-GG-GCCCGA-NGGCTGA--------------TAT--GCCATTGCGATATGGATTTTAGCATG----TAATATTC
Reference ( family-722 ) : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAG-T--GGCCCCA-T----AT-------CAGCCCG-AGGGCCGA-TA-T-GG-GCCNGA-NGGCTGA--------------TAT--GCCATTGCGATATGGATTTTAGCATG----TAATATTC
gi|1 : AGAATATTACAT--CTAAAA-T-CCA------TATCGCAAGGCATATCAGCC--CGAG-T--AGCCCCA-T----AC-------CAGCCCT-AGGGTTGA-TA-T-GG-GNNNNN-NNNNNNNNNNNNNNNNNNNNCTATGGGCCATTGCAATATGGATTTTAGCATG----TAATATTC
gi|10 : CCCA-T----AT-------CAGCCCA-AGGGCCGA------AG-GCCTGT-AGGTTGA--------------TAT--GCC-TTGCGTTATGGATTTTAGCATG----TAATATT
gi|11 : AAA-TACCA------TATCACATGGCATATCAGCC--TGAG-C--GG-CCCA-T----ATTGATGTACAGCCCG-AGGGC
gi|12 : AGGATATTGCAT-GCTAAAA-T-TCA------T-----ATGTCATATCAGCC--GGAG-T--GGt
gi|13 : gactgattAGAATAGTACAT-GCTAAAAAT-CCT------TATTATATGTCACATCAGTC--TGAG-T--ttata
gi|14 : AAA-T-CCA------TATCATATGCCATAACAGCC--CAAG-T--GGACCCA-T----AT-------CAGCCCA-AGGGCCGctctttat
gi|15 : CAGA-GGGCTGA--------------CAT--GA-ATTATGATTTGTATTTTGACATG----TAATATTC
gi|16 : tttagaatATATTAAAA-GCCAAAA-T-CCA------TATAGCAGAGCACATTAAAC--CAAG-T--GACCt
gi|17 : AAAA-T-CCA------TATCGCATGGCATATCAGCCATCGA--TCAGGCCCCA-T----att
gi|18 : atgcATTACATTGCTAAAA-T-CCA------TATCGCATGGCATATC
gi|19 : AGAATATTACAT-GTTAAAT-T-CCA------TATCGCAAGGc
gi|2 : AGAATATTACG--GCTAAA--T-CCAATATGATATCGCATGGCATATCGGCC--CGAGTT--AGCCCCATT----AT-------CAGCC---AAGTTTGATTA-T-GGAGCCTGA-GGGCTGA--------------TAT--GCC-TTGCGATATGGATTTTAGCATG----TAATAT
gi|20 : agATATTACAT-GCTAAAA-T-CCA------TATAGCATGG
gi|3 : CA------TATCGCATGACATATCAGAC--TGAG-T--GGTCCCA-TATTGAT-------CAGCTCG-AAGGTAGA-TATT-GA-GTTCGA-GGGCTGA--------------TAT--GCCA-TGCGGTATGGATTTTAGCATAATATTAATATTC
gi|4 : atattaAGAATAGTACAT-GCTAAAA-T-CTA------TATCACATGGCATGTCAGCC--CGAA-T--GGTCCAA-T----AT-------CAATCCG-AG-------------------GA-CG---GA--------------TAT--GTCA-TGTGATATGGATTTAAGCATA----TAGTATT
gi|5 : tAGAATATTACAT-GCTAAAT-T-TCA------TATAGCATGGTATAT-------------------------------------CAGCCCG-AGGGTTGA-TA-TGGG-GCCGGA-CGGCTGA--------------CAT--GCCA-TGCGATTCGGAATTTAGAGTA----TAATATTCtt
gi|6 : gCA-T----AT-------CAGCCCGTATAGTTGG-TA-T----GC-------GCTTA--------------TAT----CA-TAAGATACGGAATTTATCATG----TAGTATTt
gi|7 : aatacGAATATTACAT-ACTAAAA-T-CCA------TATTGCAAGGCTTATCAGCC--TCA-----GGCCCCA-T----AT-------CAGTCCG-AGGGCCGA-----------------AGCTGA--------------TAT--GCCA-TGCGATATGGATTTTacatatgaaggttttaatattcactatttgacacttacat
gi|8 : TACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CAAG-T--GGCCCCA-T----AT-------CAGCCCG-AGAGCCGA-CA-T-catt
gi|9 : gctccgatattctgGAG-T--TGCCCCA-T----AT-------CAGCCCG-AAGGTTGA-TA-T-TG-GCCCGAGCGGCTGAT-------------TAT--GCCTTTG-AATATA---TTTAGCATG----TAAAATTC
Alignments
lowQualScore : 1111111 33333333333333333 22222222222222 11
lowQualScore : 3 2 2 777777 44 22 33 1 3 6666 0000000 3 11 00000000000000000 77777777777777 55 88 0 9999
lowQualScore : . . . ...... .. .. .. . . .... ....... . .. ................. .............. .. .. . ....
lowQualScore : 3 7 7 222222 22 99 99 0 1 5555 8888888 3 99 77777777777777777 55555555555555 55 99 7 4444
consensus : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAG-T--GGCCCCA-T----AT-------CAGCCCG-AGGGCCGA-TA-T-GG-GCCCGA-NGGCTGA--------------TAT--GCCATTGCGATATGGATTTTAGCATG----TAATATTC
Reference ( family-722 ) : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAG-T--GGCCCCA-T----AT-------CAGCCCG-AGGGCCGA-TA-T-GG-GCCCGA-NGGCTGA--------------TAT--GCCATTGCGATATGGATTTTAGCATG----TAATATTC
gi|1 : AGAATATTACAT--CTAAAA-T-CCA------TATCGCAAGGCATATCAGCC--CGAG-T--AGCCCCA-T----AC-------CAGCCCT-AGGGTTGA-TA-T-GG-GNNNNN-NNNNNNNNNNNNNNNNNNNNCTATGGGCCATTGCAATATGGATTTTAGCATG----TAATATTC
gi|10 : CCCA-T----AT-------CAGCCCA-AGGGCCGA------AG-GCCTGT-AGGTTGA--------------TAT--GCC-TTGCGTTATGGATTTTAGCATG----TAATATT
gi|11 : AAA-TACCA------TATCACATGGCATATCAGCC--TGAG-C--GG-CCCA-T----ATTGATGTACAGCCCG-AGGGC
gi|12 : AGGATATTGCAT-GCTAAAA-T-TCA------T-----ATGTCATATCAGCC--GGAG-T--GGt
gi|13 : gactgattAGAATAGTACAT-GCTAAAAAT-CCT------TATTATATGTCACATCAGTC--TGAG-T--ttata
gi|14 : AAA-T-CCA------TATCATATGCCATAACAGCC--CAAG-T--GGACCCA-T----AT-------CAGCCCA-AGGGCCGctctttat
gi|15 : GA-GGGCTGA--------------CAT--GA-ATTATGATTTGTATTTTGACATG----TAATATTC
gi|16 : tttagaatcaATATTAAAA-GCCAAAA-T-CCA------TATAGCAGAGCACATTAAAC--CAAG-T--GACCt
gi|17 : AAAA-T-CCA------TATCGCATGGCATATCAGCCATCGA--TCAGGCCCCA-T----att
gi|18 : atgcATTACATTGCTAAAA-T-CCA------TATCGCATGGCATATC
gi|19 : AGAATATTACAT-GTTAAAT-T-CCA------TATCGCAAGGc
gi|2 : AGAATATTACG--GCTAAA--T-CCAATATGATATCGCATGGCATATCGGCC--CGAGTT--AGCCCCATT----AT-------CAGCC---AAGTTTGATTA-T-GGAGCCTGA-GGGCTGA--------------TAT--GCC-TTGCGATATGGATTTTAGCATG----TAATAT
gi|20 : agATATTACAT-GCTAAAA-T-CCA------TATAGCATGG
gi|3 : CA------TATCGCATGACATATCAGAC--TGAG-T--GGTCCCA-TATTGAT-------CAGCTCG-AAGGTAGA-TATT-GA-GTTCGA-GGGCTGA--------------TAT--GCCA-TGCGGTATGGATTTTAGCATAATATTAATATTC
gi|4 : atattaAGAATAGTACAT-GCTAAAA-T-CTA------TATCACATGGCATGTCAGCC--CGAA-T--GGTCCAA-T----AT-------CAATCCG-AG-------------------GA-CG---GA--------------TAT--GTCA-TGTGATATGGATTTAAGCATA----TAGTATT
gi|5 : tAGAATATTACAT-GCTAAAT-T-TCA------TATAGCATGGTATAT-------------------------------------CAGCCCG-AGGGTTGA-TA-TGGG-GCCGGA-CGGCTGA--------------CAT--GCCA-TGCGATTCGGAATTTAGAGTA----TAATATTCtt
gi|6 : gCA-T----AT-------CAGCCCGTATAGTTGG-TA-T----GC-------GCTTA--------------TAT----CA-TAAGATACGGAATTTATCATG----TAGTATTt
gi|7 : aatacGAATATTACAT-ACTAAAA-T-CCA------TATTGCAAGGCTTATCAGCC--TCA-----GGCCCCA-T----AT-------CAGTCCG-AGGGCCGA-----------------AGCTGA--------------TAT--GCCA-TGCGATATGGATTTTacatatgaaggttttaatattcactatttgacacttacat
gi|8 : TACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CAAG-T--GGCCCCA-T----AT-------CAGCCCG-AGAGCCGA-CA-T-catt
gi|9 : gctccgatattctgGAG-T--TGCCCCA-T----AT-------CAGCCCG-AAGGTTGA-TA-T-TG-GCCCGAGCGGCTGAT-------------TAT--GCCTTTG-AATATA---TTTAGCATG----TAAAATTC
blockSeqs : T A A ATATGA AT GT CA A T ATTG TGATGTA T CC TTATGGAGCCTGAG T . AT ATAT
blockSeqs : . . . . . G . C . . . . CC TATTGAGTTCGAG . . TT .
blockSeqs : . . . . . G . C . . . . TT TATGGGGCCGGAC . . T .
blockSeqs : . . . . . G . C . . . . TA TATTGGCCCGAGC . . T .
blockSeqs : . . . . . G . T . . . . TT AGGCCTGTA . . A .
blockSeqs : . . . . . G . T . . . . TT TATGC . . A .
blockSeqs : . . . . . G . C . . . . CC GAC . . A .
blockSeqs : . . . . . A . C . . . . CC . . . A .
blockSeqs : . . . . . G . C . . . . TT . . A
blockSeqs : . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : TATGGGCCGAN****** ************** ** A*
originalCons : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAG-T--GGCCCCA-T----AT-------CAGCCCG-AGGGCCGA-TA-T-GG-GCCCGA-NGGCTGA--------------TAT--GCCATTGCGATATGGATTTTAGCATG----TAATATTC
finalCons : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAG-T--GGCCCCA-T----AT-------CAGCCCG-AGGGCCGATATGGGCCGAN------GGCTGA--------------TAT--GCCA-TGCGATATGGATTTTAGCATG----TAATATTC
Alignments
lowQualScore : 1111111 44444444444444444444 222222222222222
lowQualScore : 3 2 2 666666 33 66 1 3 7777777 3 11 44444444444444444444 999999999999999 55 55 9999
lowQualScore : . . . ...... .. .. . . ....... . .. .................... ............... .. .. ....
lowQualScore : 1 5 5 888888 99 88 0 1 9999999 3 99 00000000000000000000 000000000000000 55 44 4444
consensus : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAGT--GGCCCCAT-AT-------CAGCCCG-AGGGCCGAT-A-T-GG-G-C-C-G-A-NGGCTGA---------------TAT--GCCA-TGCGATATGGATTTTAGCATG----TAATATTC
Reference ( family-722 ) : AGAATATTACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CGAGT--GGCCCCAT-AT-------CAGCCCG-AGGGCCGAT-A-T-GG-G-C-C-G-A-NGGCTGA---------------TAT--GCCA-TGCGATATGGATTTTAGCATG----TAATATTC
gi|1 : AGAATATTACAT--CTAAAA-T-CCA------TATCGCAAGGCATATCAGCC--CGAGT--AGCCCCAT-AC-------CAGCCCT-AGGGTTGAT-A-T-GG-G-N-N-N-N-NNNNNNNNNNNNNNNNNNNNNCTATGGGCCATTGCAATATGGATTTTAGCATG----TAATATTC
gi|10 : CCCAT-AT-------CAGCCCA-AGGGCCGA------AG-G-C-CTG-T-AGGTTGA---------------TAT--GCCT-TGCGTTATGGATTTTAGCATG----TAATATT
gi|11 : AAA-TACCA------TATCACATGGCATATCAGCC--TGAGC--GG-CCCAT-ATTGATGTACAGCCCG-AGGGC
gi|12 : AGGATATTGCAT-GCTAAAA-T-TCA------T-----ATGTCATATCAGCC--GGAGT--GGt
gi|13 : gactgattAGAATAGTACAT-GCTAAAAAT-CCT------TATTATATGTCACATCAGTC--TGAGT--ttata
gi|14 : AAA-T-CCA------TATCATATGCCATAACAGCC--CAAGT--GGACCCAT-AT-------CAGCCCA-AGGGCCGctctttat
gi|15 : -G-A-GGGCTGA---------------CAT--GAAT-TATGATTTGTATTTTGACATG----TAATATTC
gi|16 : tttagaatcaATATTAAAA-GCCAAAA-T-CCA------TATAGCAGAGCACATTAAAC--CAAGT--GACCt
gi|17 : AAAA-T-CCA------TATCGCATGGCATATCAGCCATCGA-TCAGGCCCCAT-att
gi|18 : atgcATTACATTGCTAAAA-T-CCA------TATCGCATGGCATATC
gi|19 : AGAATATTACAT-GTTAAAT-T-CCA------TATCGCAAGGc
gi|2 : AGAATATTACG--GCTAAA--T-CCAATATGATATCGCATGGCATATCGGCC--CGAGTT-AGCCCCATTAT-------CAGCC---AAGTTTGATTA-T-GGAG-C-CTG-A-GGGCTGA---------------TAT--GCCT-TGCGATATGGATTTTAGCATG----TAATAT
gi|20 : agATATTACAT-GCTAAAA-T-CCA------TATAGCATGG
gi|3 : CA------TATCGCATGACATATCAGAC--TGAGT--GGTCCCAT-ATTGAT---CAGCTCG-AAGGTAGAT-A-TTGA-G-TTC-G-A-GGGCTGA---------------TAT--GCCA-TGCGGTATGGATTTTAGCATAATATTAATATTC
gi|4 : atattaAGAATAGTACAT-GCTAAAA-T-CTA------TATCACATGGCATGTCAGCC--CGAAT--GGTCCAAT-AT-------CAATCCG-AG---------------------G-A-CG---GA---------------TAT--GTCA-TGTGATATGGATTTAAGCATA----TAGTATT
gi|5 : tAGAATATTACAT-GCTAAAT-T-TCA------TATAGCATGGTATATCAGCC--CGAG-------------------------------GGTTGAT-A-T-GG-GGC-C-GGA-CGGCTGA---------------CAT--GCCA-TGCGATTCGGAATTTAGAGTA----TAATATTCtt
gi|6 : gCAT-AT-------CAGCCCGTATAGTTGGT-A-T----G-C---------GCTTA---------------TAT----CA-TAAGATACGGAATTTATCATG----TAGTATTt
gi|6 : aatacAATAGTGAAT-ATTAAAA-C-CT---------TCATATGTCATATCAGCC--CGacatatgaaggttttaatattcactatttgacacttacat
gi|7 : aatacaatactacatgataaattccgtatcttatgatataagcgcataccaactataGAATATTACAT-ACTAAAA-T-CCA------TATTGCAAGGCTTATCAGCC--TCA----GGCCCCAT-AT-------CAGTCCG-AGGGCCGA--------------------AGCTGA---------------TAT--GCCA-TGCGATATGGATTTTtgacacttacat
gi|8 : TACAT-GCTAAAA-T-CCA------TATCGCATGGCATATCAGCC--CAAGT--GGCCCCAT-AT-------CAGCCCG-AGAGCCGAC-A-T-catt
gi|9 : gctccgatattctgGAGT--TGCCCCAT-AT-------CAGCCCG-AAGGTTGAT-ATT-GG-C-C-C-G-AGCGGCTGAT--------------TAT--GCCT-TTGAATATA---TTTAGCATG----TAAAATTC