lowQualScore : 1 5555555555555555555555555555 111111 111 2222 11111111 1 333333333333333333333333333333333333333333 111 11 111 222222 111111 3333333333333333333333333333333 1111 11111 11111 333333 1111111111111 111111111 1 6666666666666666666666666666666666666 1
lowQualScore : 8 2 1 8 3 7777777777777777777777777777 111111 111 3333 6 44444444 0 444444444444444444444444444444444444444444 444 3 11 1 6 666 333333 0 999999 99 9999999999999999999999999999999 3 1 77 5 2222 99 44444 5 1 5 4 00000 666 999 6 0 3 2 000000 9999 44 6666666666666 444444444 999 1 1 6 5555555555555555555555555555555555555 99 7 4
lowQualScore : . . . . . ............................ ...... ... .... . ........ . .......................................... ... . .. . . ... ...... . ...... .. ............................... . . .. . .... .. ..... . . . . ..... ... ... . . . . ...... .... .. ............. ......... ... . . . ..................................... .. . .
lowQualScore : 0 2 8 0 2 0000000000000000000000000000 888888 777 5555 7 33333333 5 333333333333333333333333333333333333333333 000 2 00 0 7 000 000000 8 222222 22 7777777777777777777777777777777 0 3 44 7 1111 44 33333 7 7 0 4 00000 111 666 7 5 3 2 444444 3333 22 9999999999999 666666666 777 0 1 2 1111111111111111111111111111111111111 22 5 0
consensus : GATAGA-ACGTGTGTC-ACCGGGCGACAAA-CAC--ATCACC----------------ATT--T---AGGA---AAAT--CATCGCT-GCANTGA----ATCTNACCACG--------A-TCGGC----C-AA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACGGGT--GTTGAAC-CGAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGTCCC-TTGTA-TTGAT-----TATA-GTAC---TACTTGAA-GG-GG----GTG-TTAT-----TT-AAACGATGTA-TAAATGA-CCA-----A-A-ACGN--GTTGGNATCGT-TATCAGAGT--G-ACTTC---AAAG--G-------------GGG-------NTT-NATAGAGGATTCACATTTT-TAT--TA---------T-----TATTTTC-AAAT----TT-ACACAATCCGGAA-GACAAGCCCCT
Reference ( gi|4 ) : GATAGA-ATGAGTGTC-ACCGGGCGACAAA-CGC--ATCACC----------------ATT--T---AGGA---AAAT--TTTCGCT-GCATCAA----ATCTTACCACG--------A-TCGGT----C-AA---TAAA------TTGTTTGTTTAGAGTAC---AGAAACGGGT--GTTGAAC-TGAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGTCCC-TTGTA-TTGAT-----TATA-GTAC---TACTTGAA-GG-GG----GTG-CTAT-----TT-AAACAATGTG-TAAATGA-CCA-----A-A-ACGG--GTTGGAATTGT-TATTAGAGG--T-ACTTT---AAAG--G-------------GGG-------ATT-AATAAAGGATTAACATTTT-TAT--TA---------T-----TATTTTTGAAAT----TT-ACACAATGCGGAA-GACAAGCCCCT
gi|2 : GATAGA-ACGTATGTC-AACCGACGGCAAA-CCC--ATCTCC----------------ATT--T---AGGA---AAAC--CATCGCT-GTAGTGA----ATCTAACCACG--------A-TCAGC----C-AA---TAAT------TTGCTAGTTTACAATAC---A-AAACAGGT--GTTAAAT-CTAGT-GAGG--TACAT------TTTCCAAGATG------GCGA--CTTTCGGC-----G----------------------------TTGCA-AG-AG----GTG-TTAT-----TT-AAACGCTGTA-TAAATGACCCA-----A-A-ATGT--GTTGACATCGC-TATCAGAAT--G-ACTTC---AAAG--G-------------GGA-------TTT-TTTGGAGGAATCACATTTTATATA-TA---------T-----T-TTTTT-AATT----TT-CCACAATCCGAAA-TGCAAGCCCCT
gi|5 : cgatttggcgagatgacacactaattgttgatattgtagttctgtttttgtttGATAGA-ACTTGTGTAGACCGG-CAACAAA-TAC--A---CC----------------ATG--T---AGGA---ATAT--CATTGTT-GTAGCGA----ATCTAACCACG--------AAT--GT----C-AA------A------TT-----CATGGAGTAC---AGAAAAATGT--ATTGAAC-T
gi|3 : ttttgaacaggtatgcaagtaccaatattgcgccgtcctggccaatttagtccacagcacggagaagcctgattccaaaacgcaagcttattgtctaaacatacaagtatgaaataaaacaatataaattgaattcttttttaattgatttggtgagatcattgagatgtcattaaaattggtaatgttttctgtttttcatttATAGG-AAGTGTGTC-ACCGGGCGACAAAACAC--A-CACC----------------ATTCTT---AGGA---AA-T--CTTCGCTCGCATTTATATGATCTCTGCACG--------A-TCGGC----CCAA---TAAA------TTGTT-GTTTGGAGTCC---AGAAACGGTT--GGTGAACCTGAGTGGGGT--AATAT------TTTCCAAG-TG------GCGA--CTTTCGTCCCCTTGTACTTGAT-----TATA-GTAC---TACTTGAAAGG-GG----GT--TTAT-----TTTAAACGATGTG-TAAATGA-CCA-----A-A-ACGG--GTTGGAAGTGTCTATTAGAGT--G-ACTTC---AAAA--G-------------GGG-------ATT-AATAGAGGATC-ACATTTTATA---TA---------T-----TTTTTTT--AAT----TTAACACAAC-CGGAA-GACAAGCCCCT
gi|10 : tgaATAGA-ATGAGTGTC-AACTGGCAACAAA-CAC--ATCATA----------------TTT--T---CGGA---AAAC--CATTGCT-GCATTAA----ATCTGACAAAG----------TCTGTCATCC-AA---TAAA------GTG
gi|1 : attTAGATATGTGTGTC-ACCGGGCGACAAA-AACTTATCATCTTTATGGGCATATAATATT--TTAAAGAATAAAAATCATCTCGCT-GCATTAA----ATCTTCCTGCATTTCCTGCA-TCGGG----T-AAGTATAAAAAAAAATTGTAAGTTGAGCTTACCCAAAAAACGGGTCTGTT--AC-TGAGTGGGGGCCTAAATAATTTCTTTCCAAAAGGTATTTTGCGAAACTTCCGTCCA-TTGTA-TTGAT-----TAC-----T---TGATTGAT-GGTAGCTTTGTGTCTATGTTTCTT-AA-CGATGTGATAAATGA-CCGTTGTGG-T-ACGG--GTTTG---TGT-ATTTAG-GA--TGAATTTCCAAAAG--GATTGTGTTTGTGTGGC-------ATT-AATAGAG-ATTCACATTTT-TAT--TA---------T-----TTTTTTTTAAAT----TT-AAACAATCCGGAA-GACAAGCCCCTatataaagtgctagttttgtggtgactttcgtcccgtattggtagtattacttgcaggggtgttattcaaacgaggtagaaattaccaacaacgagttgatatcgctatcagaatgacttcaaacgggactttgtagaccataatattttt
gi|8 : ggagTT--T---AGGA---AAAT--CATTGCT-GCAGTGA----GTCTAAACAAG--------A-TCAAC----C-AA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACAGGT--GTTGAAC-CTAGTGGGG---CATGT------TTTTCAAGATG------GCGA--CTTTCGTCAC-TTGTA-CTGATATACATGTA-GTACATTTAGTTACA-AG-GG----GTG-TTAT-----CT-AAATGATGTA-TAAATGA-CCA-----A----CTGCTGTTGATATCGT-TATCAGAAA--G-ACTTG---AAAG--G-------------TGA-------TTT-TCTAAAGGAATAACATTTT-TAT--T---------------------------T----TT--CACAATCCGGAAAGACAACCCCCTatgggaataaccaccattatgacgatggctcattcatcctt
gi|18 : TGAAC-CGAGTGGGGG--TGTAT------TTTCCAAGATG------GCGA--C-------------TA-TTGATATAG-TACATGTAC---TATTTGAA-GG-GG----GTG-TTAT-----TT-ACACAATGTA-TAAATGA-CCA-----A-A-A
gi|10 : TG------GTGA--CTTTCGTCCC---GTA-TTG--------GTA-GTAT---TACTTGCA--G-GG----GTG-TTAT-----TC-AAACGAGGTA-GAAATTA-CCA-----ACA-ACGA--GTTGATATCGC-TATCAGAAT--G-ACTTC---AAAC--G-------------GGA-------CTT-TGTAGACCA-TAATATTTT-T
gi|11 : attatagaatgagtgtcaactggcaacaaacacatcatattttcggaaaaccattgctgcattaaatctgacaaagtctgtcatccaataaagtgatataaagtgctagttttg-----TATA-GTAC---TACTTGAA-GG-GG----GTA-TTAT-----TT-AAACAAAGGG-TAAATAA-CCA-----A-A-ACGG--GTTGGAATTGT-TATTAGAGC--G-ACTTC---AAAG--G-------------GGG-------ATT-AATAGAGGATTCACATTTT-T-----------------------TTTTAAAAAT----TT-AC
gi|21 : actgattatagTGTA-CAAATGG-CCA-----A-A-ACGT--ATTGACATCGT-AATCAAACT--G-ACTTC---AAAG--G-------------cnggggattaatagaggattcacatttttttttcaatttacacaaaccggaagacaagccccta
gi|16 : gtattaattacagggcGA-TCA-----A-ATACAT--GTTGACATC-T-TATCAGAAT--G-ACGTC---AAAG--G-------------GGA-------TTT-TCTAATGGATTCATATATT-T---------------T-----TATTT--AAAATGACTTT-CCACAACCCGGAA-GACAATCCCTT
gi|14 : -----A-A-ACGT--GTTGGAAAGAC-T-TCAAAGGAAT-GTTTT---AAAATAG-------------AGG-------ATTCAATTA-TTATTATCATTTT-TAT--TT---------T-----TATTTTC-------------CGCAATCTGAAA-GACAAGCCTCTgt
gi|15 : cactttaaagattgcccaaaattt-ACGT--GTTGGAATTGT-TATCAGAAT--G-ACCTC---AAAG--G-------------GGGGGGGGGTGTT--ATAGAGGATTCACATTTT-T-T--TAAAATTTGTTT-----TATTTT---ATT----TT-GCACAATCCGGAA-GACAAGTCCCTgtgtc
gi|19 : GAATTGT-TATCAGAGT--G-ACTTC---AAAG--G-------------GGT-------ATT-AATAAAGGATTCACATTTT-TATTATA---------T-----TATTgt
gi|17 : ATCGT-TATCAGAAT--G-ACTTG---AAAG--A-------------AGA-------TTT-TCTAGAGGATTCATATTTT-T----TA---------T-----TATTTTC-------------CACCACCCGGAA-GACAATCCCCatatattaatat
gi|11 : ttaataccgaatgttctagtTTT---ACCN--G-------------GGG-------ATT-AATAGAGGATTCACATTTT-T-----------------------TTTTC--AAT----TT-ACACAAACCGGAA-GACAAGCCCCTggt
gi|20 : actgattatagtatagtactacttgaagggggtattatttaaacaaagggtaaataaccaaaacgggttggaattgttattagagcgacttcaaagggggattaatagaggattcacatttttttttaaaaaACATTTT-CAT--TA---------TCTTTTTTTTTTTGAC-T----TT-ACACAATCCGGAA-GACAAGCCCa
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): CGGAAGTTTAAAATAACTGAGGCATTGTTGTAAACTCTTTAGAAGGGGAAAGTATGTCAAAATGTTGATAAAAATCTGCACTACATGTTTTATATAGATGCAGGCATAGGTTAGGCAATACAAGGGCTATAGATGTTGTGCGCTAATTCAAAACACTCTATGAACACAAATTATTTTAACAAACCATTATTCTGTTGCCAAGTTATGCTGTTTTAAATCTTTCCTTTCTAACAATTTTCCCCTGCTAGTTCTGTCTCACTCCGTTAACAATGGGAAGCGATTTGCGAGGAGACAGATAAATAATGTTG
Unaligned ( gi|7 ): TTATAAATCAGGGTCATGATTTGGATTTTCACACATGTTTACAAGTACCAAGAAGGCGACCTTGTGGCCAATAGGGACAAGAGCTGGTGCAAAACATAAAGCTCGTTGTCGATTCATACGAGTCTGAAATAATTCATTTTTAATTCAGTTTCTTTCAGACCGATTTTGCGTGATGCCACACACATTAGTGATATATTCGTTCTCGTTTAAAAGAATAATTTATTGGTAAACCCACGTTAAGTACATCATGAAAATGACGATAATCTTTTAATGAAAATATATAAATTCATGTAATTACAG
Unaligned ( gi|9 ): ACCGAAGTTTACAAATAACAAGGCTTGTCTAGAACGCGTAAAAATTTCAAATAAAAAGTATGCACAAATGTTTTACAGATGCAGGCACGGTTAGAGCAATACAAGGTATAAAATACAAATTATTTTAACAAAACATTTTTCTAATGACAATTATGCTGATTTTGATATTTCCATTTCTGACATTTTTCCCTTTAGTCTGTTTCACTTCCGTTCCTTCCAGATCAATTTGGCGAGATGACAAATGTTATGTTGTACCTGTTTTCGTTTGA
Unaligned ( gi|12 ): TTACAGATCCGACAGATCATGATTTGGATTTTCACATTTGTTCAACTATGTGACCAATTCAGACTACAGCAGGGGCAAAGTCTTGGTGCAAAACGCAAGCTCACTGTCTCATCATAGGAATCTAAAATGAGACATGTAATTTGTTCCATCCAAACTGATTTGATGAGATGATACACGTACATTCATCATTTAGAAAAATCA
Unaligned ( gi|13 ): TTACAGATCCGACAGGATCATGATTTGGATTTTCACATTTGTTCAACTATGTGACCAATTCAGACTACAGCAGGGGCAAAGTCTGGTGCAAAACGCAAGCTCACTGTCTCATCATAGGAATCTAAAATGAGACATTGTAATTTGTTCCATCCAAACTGATTTGATGAGATGATACACGTACAT
Unaligned ( gi|22 ): CAATATGGCGAGATGGCATACAAATTGATGATGTTGTACATGTATCTGTTCTAGTTACTGAT
Unaligned ( gi|23 ): CGATTTCGCAAGGTGGCAAATGAATATTGCCGATATTGTACTTGTTTTCGTTTGATAGAAC
Alignments
lowQualScore : 4444444444444444 111 111 1111 111 22222222 111 111111 111 111111 111111 1111 2222222222 11111 1111111111111 33333333333333333333333333333333333333333
lowQualScore : 6 2 6 1 6 99 7 4444444444444444 77 000 000 77 5 1 0 2222 1 000 00000000 5 000 666666 66 000 1 99 6 6 99 999999 666666 77 5 1111 5 8888888888 888 1 5 5 9999 777 4 66 4 4 4 00000 3 3 3 44 1 3 2 3 44 77777 5555555555555 444 3 6666 1 33 2 4 88888888888888888888888888888888888888888 2 0 3
lowQualScore : . . . . . .. . ................ .. ... ... .. . . . .... . ... ........ . ... ...... .. ... . .. . . .. ...... ...... .. . .... . .......... ... . . . .... ... . .. . . . ..... . . . .. . . . . .. ..... ............. ... . .... . .. . . ......................................... . . .
lowQualScore : 7 2 7 0 7 22 3 2222222222222222 99 000 000 99 7 0 4 1111 0 000 77777777 7 000 444444 00 000 0 22 7 7 22 222222 444444 99 7 1111 7 0000000000 888 4 0 0 4444 888 4 11 4 4 0 00000 6 3 6 66 0 1 5 1 22 11111 7777777777777 111 1 4444 7 99 9 2 22222222222222222222222222222222222222222 2 5 6
consensus : GATAGA-ACGTGTGTC-ACCGGGCGACAAA-CAC--ATCACC----------------ATT--T---AGGA---AAATCATC--GCT-GCATCGA----ATCTNACCA---CG--------ATCGG-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACGGGT--GTTGAACC-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGT---TA-TTTA--AACGA-TGT-ATAAATGA-CC-----AA-A-AC-G-NGTTGGNATCGT-TATCAGAATG-ACTTC--AAAG-----G-------------GG-GNT-T---NATAGAGGATTCACA--TTTT-TAT--TA---------T-----TATTTT-T-A-----AN-----TTTACACAATCCGG-AAGACAAGCCCCT
Reference ( family-699 ) : GATAGA-ACGTGTGTC-ACCGGGCGACAAA-CAC--ATCACC----------------ATT--T---AGGA---AAATCATC--GCT-GCANTGA----ATCTNACCA---CG--------ATCGG-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACGGGT--GTTGAACC-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGT---TA-TTTA--AACGA-TGT-ATAAATGA-CC-----AA-A-AC-G-NGTTGGNATCGT-TATCAGAGTG-ACTTC--AAAG-----G-------------GG-GNT-T---NATAGAGGATTCACA--TTTT-TAT--TA---------T-----TATTTT-C-A-----AA-----TTTACACAATCCGG-AAGACAAGCCCCT
gi|1 : TAGATATGTGTGTC-ACCGGGCGACAAA-AACTTATCATCTTTATGGGCATATAATATT--TTAAAGAATAAAAATCATCTCGCT-GCATTAA----ATCTTCCTG---CATTTCCTGCATCGG-GTAAGTATAAAAAAAAATTGTAAGTTGAGCTTACCCAAAAAACGGGTCTGTT--ACT-GAGTGGGGGCCTAAATAATTTCTTTCCAAAAGGTATTTTGCGAAACTTCCGT-CCATTGTA-TTGAT-----TAC-----T---TGATTG-ATGGTAGCTTTGTGTCTATG-TTTCTTAACGA-TGTGATAAATGA-CCGTTGTGG-T-AC-G-GGTTTGTGTATT-T---AGGATGAATTTCCAAAAG-----GATTGTGTTTGTGTGG-CAT-T---AATAGA-GATTCACA--TTTT-TAT--TAT--------T-----TTTTTT-T-A-----AA-----TTTAAACAATCCGG-AAGACAAGCCCCT
gi|10 : ggagATAGA-ATGAGTGTC-AACTGGCAACAAA-CAC--ATCATA----------------TTT--T---CGGA---AAACCATT--GCT-GCATTAA----ATCTGACAAAGTCT--------GTCAT-CCAA---TAAA------GTGATA---TAAAGTGC---atgggaataaccaccattatgacgatggctcattcatcctt
gi|10 : attTG------GTGA--CTTTCGT-CCC--GTA-TTGGT--------A-GTAT---TACTTG-CAGG-GG-----TGT---TA-TTCA--AACGA-GGT-AGAAATTA-CC-----AACA-AC-G-AGTTGATATCGC-TATCAGAATG-ACTTC--AAAC-----G-------------GG-ACT-T---TGTAGACCA-TAATA--TTTT-Ttagttttgtggtgactttcgtcccgtattggtagtattacttgcaggggtgttattcaaacgaggtagaaattaccaacaacgagttgatatcgctatcagaatgacttcaaacgggactttgtagaccataatattttt
gi|11 : attatagaatgagtgtcaactggcaacaaacacatcatattttcggaaaaccattgctgcattaaatctgacaaagtctgtcatccaataaagtgatataaagtgctagttttg-----TATA-GTAC---TACTTG-AAGG-GG----GTAT---TA-TTTA--AACAA-AGG-GTAAATAA-CC-----AA-A-AC-G-GGTTGGAATTGT-TATTAGAGCG-ACTTC--AAAG-----G-------------GG-GAT-T---AATAGAGGATTCACA--TTTT-T-----------------------TTTTAA-A-----AA-----TTTAC
gi|11 : actgattatag-----G-------------GG-GAT-T---AATAGAGGATTCACA--TTTT-T-----------------------TTTT-C-A-----A------TTTACACAAACCGG-AAGACAAGCCCCTcnggggattaatagaggattcacatttttttttcaatttacacaaaccggaagacaagccccta
gi|14 : actgattatagtatagtactacttgaagggggtattatttaaacaaagggtaaataaccaaaacgggttggaattgttattagagcgacttcaaagggggattaatagaggattcacatttttttttaaaaatttaccnA-A-AC-G-TGTTGGAA------A-------G-ACTTC--AAAG-----G-------------AATGTT-TTAAAATAGAGGATTCA-A--TTAT-TAT--TA---------T-----CATTTT-T-ATTTTTAT-----TTTCCGCAATCTGA-AAGACAAGCCTCTa
gi|15 : cactttaaagattgcccaaaattt-AC-G-TGTTGGAATTGT-TATCAGAATG-ACCTC--AAAGGGGGGG-------------GG-GGTGT---TATAGAGGATTCACA--TTTT-T-T--TAAAATTTGTTT-----TATTTT---------AT-----TTTGCACAATCCGG-AAGACAAGTCCCTgtgtc
gi|16 : GA-TC-----AA-ATAC-A-TGTTGACATC-T-TATCAGAATG-ACGTC--AAAG-----G-------------GG-ATT-T---TCTAATGGATTCATA-------TAT--TT---------T-----TATTT----A-----AAATGACTTTCCACAACCCGG-AAGACAATCCCTTgt
gi|17 : TAGTATCGT-TATCAGAATG-ACTTG--AAAG-----A-------------AG-ATT-T---TCTAGAGGATTCATA--TTTT---T--TA---------T-----TATTTT-C------------------CACCACCCGG-AAGACAATCCCCgt
gi|18 : ttaataccgaatgttcTGAACC-GAGTGGGGG--TGTAT------TTTCCAAGATG------GCGA--C-------------TA-TTGATATAG-TACATGTAC---TATTTG-AAGG-GG----GTGT---TA-TTTA--CACAA-TGT-ATAAATGA-CC-----AA-A-Aggt
gi|19 : GAATTGT-TATCAGAGTG-ACTTC--AAAG-----G-------------GG-TAT-T---AATAAAGGATTCACA--TTTT-TATTATA---------T-----TATT
gi|2 : GATAGA-ACGTATGTC-AACCGACGGCAAA-CCC--ATCTCC----------------ATT--T---AGGA---AAACCATC--GCT-GTAGTGA----ATCTAACCA---CG--------ATCAG-CCAA---TAAT------TTGCTAGTTTACAATAC---A-AAACAGGT--GTTAAATC-TAGT-GAGG--TACAT------TTTCCAAGATG------GCGA--CTTTCGG-C----G----------------------------TTG-CAAG-AG----GTGT---TA-TTTA--AACGC-TGT-ATAAATGACCC-----AA-A-AT-G-TGTTGACATCGC-TATCAGAATG-ACTTC--AAAG-----G-------------GG-ATT-T---TTTGGAGGAATCACA--TTTTATATA-TA---------T-----T-TTTT-T-A-----AT-----TTTCCACAATCCGA-AATGCAAGCCCCTatatattaatat
gi|20 : cgatttggcgagatgacacactaattgttgatattgtagttctgtttttgtttGATTCACACATTTT-CAT--TA---------TCTTTTTTTTTT-T-G-----AC-----TTTACACAATCCGG-AAGACAAGCCC
gi|21 : cacta----GTAT---TA-ATTA--CAGGGCTGT-ACAAATGG-CC-----AA-A-AC-G-TATTGACATCGT-AATCAAACTG-ACTTC--AAAG-----G-------------atatgc
gi|3 : ATAGG-AAGTGTGTC-ACCGGGCGACAAAACAC--A-CACC----------------ATTCTT---AGGA---AA-TCTTC--GCTCGCATTTATATGATCTCTGCA---CG--------ATCGGCCCAA---TAAA------TTGTT-GTTTGGAGTCC---AGAAACGGTT--GGTGAACCTGAGTGGGGT--AATAT------TTTCCAAG-TG------GCGA--CTTTCGTCCCCTTGTACTTGAT-----TATA-GTAC---TACTTGAAAGG-GG----GT-T---TATTTTA--AACGA-TGT-GTAAATGA-CC-----AA-A-AC-G-GGTTGGAAGTGTCTATTAGAGTG-ACTTC--AAAA-----G-------------GG-GAT-T---AATAGAGGA-TCACA---TTT-TATA-TA---------T-----TTTTTT-T-A-----AT-----TTAACACAA-CCGG-AAGACAAGCCCCT
gi|4 : tgaGATAGA-ATGAGTGTC-ACCGGGCGACAAA-CGC--ATCACC----------------ATT--T---AGGA---AAATTTTC--GCT-GCATCAA----ATCTTACCA---CG--------ATCGG-TCAA---TAAA------TTGTTTGTTTAGAGTAC---AGAAACGGGT--GTTGAACT-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGC---TA-TTTA--AACAA-TGT-GTAAATGA-CC-----AA-A-AC-G-GGTTGGAATTGT-TATTAGAGGT-ACTTT--AAAG-----G-------------GG-GAT-T---AATAAAGGATTAACA--TTTT-TAT--TA---------T-----TATTTT-TGA-----AA-----TTTACACAATGCGG-AAGACAAGCCCCT
gi|5 : GATAGA-ACTTGTGTAGACCGG-CAACAAA-TAC--A---CC----------------ATG--T---AGGA---ATATCATT--GTT-GTAGCGA----ATCTAACCA---CG--------AATGT-C-------AAA------T--TCA---TGGAGTAC---AGAAAAATGT--ATTGAAC
gi|8 : ttttgaacaggtatgcaagtaccaatattgcgccgtcctggccaatttagtccacagcacggagaagcctgattccaaaacgcaagcttattgtctaaacatacaagtatgaaataaaacaatataaattgaattcttttttaattgatttggtgagatcattgagatgtcattaaaattggtaatgttttctgtttttcatttTT--T---AGGA---AAATCATT--GCT-GCAGTGA----GTCTAAACA---AG--------ATCAA-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACAGGT--GTTGAACC-TAGT-GGGG--CATGT------TTTTCAAGATG------GCGA--CTTTCGT-CACTTGTA-CTGATATACATGTA-GTACATTTAGTTA-CAAG-GG----GTGT---TA-TCTA--AATGA-TGT-ATAAATGA-CC--------A-ACTGCTGTTGATATCGT-TATCAGAAAG-ACTTG--AAAG-----G-------------TG-ATT-T---TCTAAAGGAATAACA--TTTT-TAT--T------------------TTT---------------------CACAATCCGGAAAGACAACCCCCTt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CGGAAGTTTAAAATAACTGAGGCATTGTTGTAAACTCTTTAGAAGGGGAAAGTATGTCAAAATGTTGATAAAAATCTGCACTACATGTTTTATATAGATGCAGGCATAGGTTAGGCAATACAAGGGCTATAGATGTTGTGCGCTAATTCAAAACACTCTATGAACACAAATTATTTTAACAAACCATTATTCTGTTGCCAAGTTATGCTGTTTTAAATCTTTCCTTTCTAACAATTTTCCCCTGCTAGTTCTGTCTCACTCCGTTAACAATGGGAAGCGATTTGCGAGGAGACAGATAAATAATGTTG
Unaligned ( gi|7 ): TTATAAATCAGGGTCATGATTTGGATTTTCACACATGTTTACAAGTACCAAGAAGGCGACCTTGTGGCCAATAGGGACAAGAGCTGGTGCAAAACATAAAGCTCGTTGTCGATTCATACGAGTCTGAAATAATTCATTTTTAATTCAGTTTCTTTCAGACCGATTTTGCGTGATGCCACACACATTAGTGATATATTCGTTCTCGTTTAAAAGAATAATTTATTGGTAAACCCACGTTAAGTACATCATGAAAATGACGATAATCTTTTAATGAAAATATATAAATTCATGTAATTACAG
Unaligned ( gi|9 ): ACCGAAGTTTACAAATAACAAGGCTTGTCTAGAACGCGTAAAAATTTCAAATAAAAAGTATGCACAAATGTTTTACAGATGCAGGCACGGTTAGAGCAATACAAGGTATAAAATACAAATTATTTTAACAAAACATTTTTCTAATGACAATTATGCTGATTTTGATATTTCCATTTCTGACATTTTTCCCTTTAGTCTGTTTCACTTCCGTTCCTTCCAGATCAATTTGGCGAGATGACAAATGTTATGTTGTACCTGTTTTCGTTTGA
Unaligned ( gi|12 ): TTACAGATCCGACAGATCATGATTTGGATTTTCACATTTGTTCAACTATGTGACCAATTCAGACTACAGCAGGGGCAAAGTCTTGGTGCAAAACGCAAGCTCACTGTCTCATCATAGGAATCTAAAATGAGACATGTAATTTGTTCCATCCAAACTGATTTGATGAGATGATACACGTACATTCATCATTTAGAAAAATCA
Unaligned ( gi|13 ): TTACAGATCCGACAGGATCATGATTTGGATTTTCACATTTGTTCAACTATGTGACCAATTCAGACTACAGCAGGGGCAAAGTCTGGTGCAAAACGCAAGCTCACTGTCTCATCATAGGAATCTAAAATGAGACATTGTAATTTGTTCCATCCAAACTGATTTGATGAGATGATACACGTACAT
Unaligned ( gi|22 ): CAATATGGCGAGATGGCATACAAATTGATGATGTTGTACATGTATCTGTTCTAGTTACTGAT
Unaligned ( gi|23 ): CGATTTCGCAAGGTGGCAAATGAATATTGCCGATATTGTACTTGTTTTCGTTTGATAGAAC
Alignments
lowQualScore : 4444444444444444 111 111 1111 111 22222222 111 111111 111 111 111111 111111 1111 2222222222 11111 1111111111111 22222222222222222222 11111111
lowQualScore : 6 2 6 1 6 99 7 4444444444444444 77 000 000 77 5 333 2222 1 000 00000000 5 000 666666 66 000 1 99 6 111 999999 666666 77 5 1111 5 8888888888 888 1 5 5 9999 777 4 66 4 4 4 00000 444 3 44 4 3 3 44 77777 5555555555555 444 3 66666 1 33 444 88888888888888888888 555 77777777 3 4 0 3
lowQualScore : . . . . . .. . ................ .. ... ... .. . ... .... . ... ........ . ... ...... .. ... . .. . ... ...... ...... .. . .... . .......... ... . . . .... ... . .. . . . ..... ... . .. . . . .. ..... ............. ... . ..... . .. ... .................... ... ........ . . . .
lowQualScore : 7 2 7 0 7 22 3 2222222222222222 99 000 000 99 7 111 1111 0 000 77777777 7 000 444444 00 000 0 22 7 777 222222 444444 99 7 1111 7 0000000000 888 4 0 0 4444 888 4 11 4 4 0 00000 888 6 66 0 1 1 22 77777 7777777777777 111 1 11111 7 99 222 77777777777777777777 444 66666666 3 3 5 6
consensus : GATAGA-ACGTGTGTC-ACCGGGCGACAAA-CAC--ATCACC----------------ATT--T---AGGA---AAATCATC--GCT-GCATCGA----ATCTNACCA---CG--------ATCGG-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACGGGT--GTTGAACC-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGT---TA-TTTA--AACGA-TGT-ATAAATGA-CC-----AA-A-AC-GN-GTTGGNATCGT-TATCAGAATG-ACTTC--AAA-----GG-------------GG-GNT-TNA---TAGAGGATTCACA--TTTT-TAT-TA---------T-----TATTT---TT--A-----ANTTTACACAATCCGG-AAGACAAGCCCCT
Reference ( family-699 ) : GATAGA-ACGTGTGTC-ACCGGGCGACAAA-CAC--ATCACC----------------ATT--T---AGGA---AAATCATC--GCT-GCATCGA----ATCTNACCA---CG--------ATCGG-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACGGGT--GTTGAACC-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGT---TA-TTTA--AACGA-TGT-ATAAATGA-CC-----AA-A-AC-GN-GTTGGNATCGT-TATCAGAATG-ACTTC--AAA-----GG-------------GG-GNT-TNA---TAGAGGATTCACA--TTTT-TAT-TA---------T-----TATTT---TT--A-----ANTTTACACAATCCGG-AAGACAAGCCCCT
gi|1 : TAGATATGTGTGTC-ACCGGGCGACAAA-AACTTATCATCTTTATGGGCATATAATATT--TTAAAGAATAAAAATCATCTCGCT-GCATTAA----ATCTTCCTG---CATTTCCTGCATCGG-GTAAGTATAAAAAAAAATTGTAAGTTGAGCTTACCCAAAAAACGGGTCTGTT--ACT-GAGTGGGGGCCTAAATAATTTCTTTCCAAAAGGTATTTTGCGAAACTTCCGT-CCATTGTA-TTGAT-----TAC-----T---TGATTG-ATGGTAGCTTTGTGTCTATG-TTTCTTAACGA-TGTGATAAATGA-CCGTTGTGG-T-AC-GG-GTTTGTGTATT-T---AGGATGAATTTCCAAAA-----GGATTGTGTTTGTGTGG-CAT-TAA---TAGA-GATTCACA--TTTT-TAT-TAT--------T-----TTTTT---TT--A-----AATTTAAACAATCCGG-AAGACAAGCCCCT
gi|10 : ggagATAGA-ATGAGTGTC-AACTGGCAACAAA-CAC--ATCATA----------------TTT--T---CGGA---AAACCATT--GCT-GCATTAA----ATCTGACAAAGTCT--------GTCAT-CCAA---TAAA------GTGATA---TAAAGTGC---atgggaataaccaccattatgacgatggctcattcatcctt
gi|10 : attTG------GTGA--CTTTCGT-CCC--GTA-TTGGT--------A-GTAT---TACTTG-CAGG-GG-----TGT---TA-TTCA--AACGA-GGT-AGAAATTA-CC-----AACA-AC-GA-GTTGATATCGC-TATCAGAATG-ACTTC--AAA-----CG-------------GG-ACT-TTG---TAGACCA-TAATA--TTTT-Ttagttttgtggtgactttcgtcccgtattggtagtattacttgcaggggtgttattcaaacgaggtagaaattaccaacaacgagttgatatcgctatcagaatgacttcaaacgggactttgtagaccataatattttt
gi|11 : attatagaatgagtgtcaactggcaacaaacacatcatattttcggaaaaccattgctgcattaaatctgacaaagtctgtcatccaataaagtgatataaagtgctagttttg-----TATA-GTAC---TACTTG-AAGG-GG----GTAT---TA-TTTA--AACAA-AGG-GTAAATAA-CC-----AA-A-AC-GG-GTTGGAATTGT-TATTAGAGCG-ACTTC--AAA-----GG-------------GG-GAT-TAA---TAGAGGATTCACA--TTTT------------------------TTT---TTAAA-----AATTTAC
gi|11 : actgattatagG-------------GG-GAT-TAA---TAGAGGATTCACA--TTTT-T-----------------------TT---TT--C-----AATTTACACAAACCGG-AAGACAAGCCCCTcnggggattaatagaggattcacatttttttttcaatttacacaaaccggaagacaagccccta
gi|14 : actgattatagtatagtactacttgaagggggtattatttaaacaaagggtaaataaccaaaacgggttggaattgttattagagcgacttcaaagggggattaatagaggattcacatttttttttaaaaatttaccnA-A-AC-GT-GTTGG-------------AAAG-ACTTC--AAA-----GG-------------AATGTT-TTAAAATAGAGGATTCA-A--TTAT-TAT-TA---------T-----CATTT---TT--ATTTTTATTTTCCGCAATCTGA-AAGACAAGCCTCTa
gi|15 : cactttaaagattgcccaaaattt-AC-GT-GTTGGAATTGT-TATCAGAATG-ACCTC--AAAGGGGGGG-------------GG-GGTGTTA---TAGAGGATTCACA--TTTT-T-T-TAAAATTTGTTT-----TATTT---T---------ATTTTGCACAATCCGG-AAGACAAGTCCCTgtgtc
gi|16 : GA-TC-----AA-ATAC-AT-GTTGACATC-T-TATCAGAATG-ACGTC--AAA-----GG-------------GG-ATT-TTC---TAATGGATTCATA-------TAT-TT---------T-----TATTTAAAAT--G-----ACTTTCCACAACCCGG-AAGACAATCCCTTgt
gi|17 : TAGTATCGT-TATCAGAATG-ACTTG--AAA-----GA-------------AG-ATT-TTC---TAGAGGATTCATA--TTTT---T-TA---------T-----TATTT---TC--------------CACCACCCGG-AAGACAATCCCCgt
gi|18 : ttaataccgaatgttcTGAACC-GAGTGGGGG--TGTAT------TTTCCAAGATG------GCGA--C-------------TA-TTGATATAG-TACATGTAC---TATTTG-AAGG-GG----GTGT---TA-TTTA--CACAA-TGT-ATAAATGA-CC-----AA-A-Aggt
gi|19 : GAATTGT-TATCAGAGTG-ACTTC--AAA-----GG-------------GG-TAT-TAA---TAAAGGATTCACA--TTTT-TAT-TA---------------TATTA---TT--A-----
gi|2 : GATAGA-ACGTATGTC-AACCGACGGCAAA-CCC--ATCTCC----------------ATT--T---AGGA---AAACCATC--GCT-GTAGTGA----ATCTAACCA---CG--------ATCAG-CCAA---TAAT------TTGCTAGTTTACAATAC---A-AAACAGGT--GTTAAATC-TAGT-GAGG--TACAT------TTTCCAAGATG------GCGA--CTTTCGG-C----G----------------------------TTG-CAAG-AG----GTGT---TA-TTTA--AACGC-TGT-ATAAATGACCC-----AA-A-AT-GT-GTTGACATCGC-TATCAGAATG-ACTTC--AAA-----GG-------------GG-ATT-TTT---TGGAGGAATCACA--TTTTATATATA---------T-----T-TTT---TT--A-----ATTTTCCACAATCCGA-AATGCAAGCCCCTtatattaatat
gi|20 : cgatttggcgagatgacacactaattgttgatattgtagttctgtttttgtttGATTCACACATTTT-CAT-TA---------TCTTTTTTTTT---TT--G-----ACTTTACACAATCCGG-AAGACAAGCCC
gi|21 : cacta----GTAT---TA-ATTA--CAGGGCTGT-ACAAATGG-CC-----AA-A-AC-GT-ATTGACATCGT-AATCAAACTG-ACTTC--AAA-----GG-------------atatgc
gi|3 : ATAGG-AAGTGTGTC-ACCGGGCGACAAAACAC--A-CACC----------------ATTCTT---AGGA---AA-TCTTC--GCTCGCATTTATATGATCTCTGCA---CG--------ATCGGCCCAA---TAAA------TTGTT-GTTTGGAGTCC---AGAAACGGTT--GGTGAACCTGAGTGGGGT--AATAT------TTTCCAAG-TG------GCGA--CTTTCGTCCCCTTGTACTTGAT-----TATA-GTAC---TACTTGAAAGG-GG----GT-T---TATTTTA--AACGA-TGT-GTAAATGA-CC-----AA-A-AC-GG-GTTGGAAGTGTCTATTAGAGTG-ACTTC--AAA-----AG-------------GG-GAT-TAA---TAGAGGA-TCACA---TTT-TATATA---------T-----TTTTT---TT--A-----ATTTAACACAA-CCGG-AAGACAAGCCCCT
gi|4 : tgaGATAGA-ATGAGTGTC-ACCGGGCGACAAA-CGC--ATCACC----------------ATT--T---AGGA---AAATTTTC--GCT-GCATCAA----ATCTTACCA---CG--------ATCGG-TCAA---TAAA------TTGTTTGTTTAGAGTAC---AGAAACGGGT--GTTGAACT-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGC---TA-TTTA--AACAA-TGT-GTAAATGA-CC-----AA-A-AC-GG-GTTGGAATTGT-TATTAGAGGT-ACTTT--AAA-----GG-------------GG-GAT-TAA---TAAAGGATTAACA--TTTT-TAT-TA---------T-----TATTT---TTG-A-----AATTTACACAATGCGG-AAGACAAGCCCCT
gi|5 : GATAGA-ACTTGTGTAGACCGG-CAACAAA-TAC--A---CC----------------ATG--T---AGGA---ATATCATT--GTT-GTAGCGA----ATCTAACCA---CG--------AATGT-C-------AAA------T--TCA---TGGAGTAC---AGAAAAATGT--ATTGAAC
gi|8 : ttttgaacaggtatgcaagtaccaatattgcgccgtcctggccaatttagtccacagcacggagaagcctgattccaaaacgcaagcttattgtctaaacatacaagtatgaaataaaacaatataaattgaattcttttttaattgatttggtgagatcattgagatgtcattaaaattggtaatgttttctgtttttcatttTT--T---AGGA---AAATCATT--GCT-GCAGTGA----GTCTAAACA---AG--------ATCAA-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACAGGT--GTTGAACC-TAGTGGGG---CATGT------TTTTCAAGATG------GCGA--CTTTCGT-CACTTGTA-CTGATATACATGTA-GTACATTTAGTTA-CAAG-GG----GTGT---TA-TCTA--AATGA-TGT-ATAAATGA-CC-----AA----CTGCTGTTGATATCGT-TATCAGAAAG-ACTTG--AAA-----GG-------------TG-ATT-TTC---TAAAGGAATAACA--TTTT-TAT-T------------------------------------TTT-CACAATCCGGAAAGACAACCCCCTt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CGGAAGTTTAAAATAACTGAGGCATTGTTGTAAACTCTTTAGAAGGGGAAAGTATGTCAAAATGTTGATAAAAATCTGCACTACATGTTTTATATAGATGCAGGCATAGGTTAGGCAATACAAGGGCTATAGATGTTGTGCGCTAATTCAAAACACTCTATGAACACAAATTATTTTAACAAACCATTATTCTGTTGCCAAGTTATGCTGTTTTAAATCTTTCCTTTCTAACAATTTTCCCCTGCTAGTTCTGTCTCACTCCGTTAACAATGGGAAGCGATTTGCGAGGAGACAGATAAATAATGTTG
Unaligned ( gi|7 ): TTATAAATCAGGGTCATGATTTGGATTTTCACACATGTTTACAAGTACCAAGAAGGCGACCTTGTGGCCAATAGGGACAAGAGCTGGTGCAAAACATAAAGCTCGTTGTCGATTCATACGAGTCTGAAATAATTCATTTTTAATTCAGTTTCTTTCAGACCGATTTTGCGTGATGCCACACACATTAGTGATATATTCGTTCTCGTTTAAAAGAATAATTTATTGGTAAACCCACGTTAAGTACATCATGAAAATGACGATAATCTTTTAATGAAAATATATAAATTCATGTAATTACAG
Unaligned ( gi|9 ): ACCGAAGTTTACAAATAACAAGGCTTGTCTAGAACGCGTAAAAATTTCAAATAAAAAGTATGCACAAATGTTTTACAGATGCAGGCACGGTTAGAGCAATACAAGGTATAAAATACAAATTATTTTAACAAAACATTTTTCTAATGACAATTATGCTGATTTTGATATTTCCATTTCTGACATTTTTCCCTTTAGTCTGTTTCACTTCCGTTCCTTCCAGATCAATTTGGCGAGATGACAAATGTTATGTTGTACCTGTTTTCGTTTGA
Unaligned ( gi|12 ): TTACAGATCCGACAGATCATGATTTGGATTTTCACATTTGTTCAACTATGTGACCAATTCAGACTACAGCAGGGGCAAAGTCTTGGTGCAAAACGCAAGCTCACTGTCTCATCATAGGAATCTAAAATGAGACATGTAATTTGTTCCATCCAAACTGATTTGATGAGATGATACACGTACATTCATCATTTAGAAAAATCA
Unaligned ( gi|13 ): TTACAGATCCGACAGGATCATGATTTGGATTTTCACATTTGTTCAACTATGTGACCAATTCAGACTACAGCAGGGGCAAAGTCTGGTGCAAAACGCAAGCTCACTGTCTCATCATAGGAATCTAAAATGAGACATTGTAATTTGTTCCATCCAAACTGATTTGATGAGATGATACACGTACAT
Unaligned ( gi|22 ): CAATATGGCGAGATGGCATACAAATTGATGATGTTGTACATGTATCTGTTCTAGTTACTGAT
Unaligned ( gi|23 ): CGATTTCGCAAGGTGGCAAATGAATATTGCCGATATTGTACTTGTTTTCGTTTGATAGAAC
Alignments
lowQualScore : 4444444444444444 111 111 1111 111 22222222 111 111111 111 111 111111 111111 1111 2222222222 11111 1111111111111 22222222222222222222 11111111
lowQualScore : 6 2 6 1 6 99 7 4444444444444444 77 000 000 77 5 333 2222 1 000 00000000 5 000 666666 66 000 1 99 6 111 999999 666666 77 5 1111 5 8888888888 888 1 5 5 9999 777 4 66 4 4 4 00000 444 3 44 4 3 3 44 77777 5555555555555 444 3 66666 1 33 444 88888888888888888888 555 77777777 3 4 0 3
lowQualScore : . . . . . .. . ................ .. ... ... .. . ... .... . ... ........ . ... ...... .. ... . .. . ... ...... ...... .. . .... . .......... ... . . . .... ... . .. . . . ..... ... . .. . . . .. ..... ............. ... . ..... . .. ... .................... ... ........ . . . .
lowQualScore : 7 2 7 0 7 22 3 2222222222222222 99 000 000 99 7 111 1111 0 000 77777777 7 000 444444 00 000 0 22 7 777 222222 444444 99 7 1111 7 0000000000 888 4 0 0 4444 888 4 11 4 4 0 00000 888 6 66 0 1 1 22 77777 7777777777777 111 1 11111 7 99 222 77777777777777777777 444 66666666 3 3 5 6
consensus : GATAGA-ACGTGTGTC-ACCGGGCGACAAA-CAC--ATCACC----------------ATT--T---AGGA---AAATCATC--GCT-GCATCGA----ATCTNACCA---CG--------ATCGG-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACGGGT--GTTGAACC-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGT---TA-TTTA--AACGA-TGT-ATAAATGA-CC-----AA-A-AC-GN-GTTGGNATCGT-TATCAGAATG-ACTTC--AAA-----GG-------------GG-GNT-TNA---TAGAGGATTCACA--TTTT-TAT-TA---------T-----TATTT---TT--A-----ANTTTACACAATCCGG-AAGACAAGCCCCT
Reference ( family-699 ) : GATAGA-ACGTGTGTC-ACCGGGCGACAAA-CAC--ATCACC----------------ATT--T---AGGA---AAATCATC--GCT-GCATCGA----ATCTNACCA---CG--------ATCGG-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACGGGT--GTTGAACC-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGT---TA-TTTA--AACGA-TGT-ATAAATGA-CC-----AA-A-AC-GN-GTTGGNATCGT-TATCAGAATG-ACTTC--AAA-----GG-------------GG-GNT-TNA---TAGAGGATTCACA--TTTT-TAT-TA---------T-----TATTT---TT--A-----ANTTTACACAATCCGG-AAGACAAGCCCCT
gi|1 : TAGATATGTGTGTC-ACCGGGCGACAAA-AACTTATCATCTTTATGGGCATATAATATT--TTAAAGAATAAAAATCATCTCGCT-GCATTAA----ATCTTCCTG---CATTTCCTGCATCGG-GTAAGTATAAAAAAAAATTGTAAGTTGAGCTTACCCAAAAAACGGGTCTGTT--ACT-GAGTGGGGGCCTAAATAATTTCTTTCCAAAAGGTATTTTGCGAAACTTCCGT-CCATTGTA-TTGAT-----TAC-----T---TGATTG-ATGGTAGCTTTGTGTCTATG-TTTCTTAACGA-TGTGATAAATGA-CCGTTGTGG-T-AC-GG-GTTTGTGTATT-T---AGGATGAATTTCCAAAA-----GGATTGTGTTTGTGTGG-CAT-TAA---TAGA-GATTCACA--TTTT-TAT-TAT--------T-----TTTTT---TT--A-----AATTTAAACAATCCGG-AAGACAAGCCCCT
gi|10 : ggagATAGA-ATGAGTGTC-AACTGGCAACAAA-CAC--ATCATA----------------TTT--T---CGGA---AAACCATT--GCT-GCATTAA----ATCTGACAAAGTCT--------GTCAT-CCAA---TAAA------GTGATA---TAAAGTGC---atgggaataaccaccattatgacgatggctcattcatcctt
gi|10 : attTG------GTGA--CTTTCGT-CCC--GTA-TTGGT--------A-GTAT---TACTTG-CAGG-GG-----TGT---TA-TTCA--AACGA-GGT-AGAAATTA-CC-----AACA-AC-GA-GTTGATATCGC-TATCAGAATG-ACTTC--AAA-----CG-------------GG-ACT-TTG---TAGACCA-TAATA--TTTT-Ttagttttgtggtgactttcgtcccgtattggtagtattacttgcaggggtgttattcaaacgaggtagaaattaccaacaacgagttgatatcgctatcagaatgacttcaaacgggactttgtagaccataatattttt
gi|11 : attatagaatgagtgtcaactggcaacaaacacatcatattttcggaaaaccattgctgcattaaatctgacaaagtctgtcatccaataaagtgatataaagtgctagttttg-----TATA-GTAC---TACTTG-AAGG-GG----GTAT---TA-TTTA--AACAA-AGG-GTAAATAA-CC-----AA-A-AC-GG-GTTGGAATTGT-TATTAGAGCG-ACTTC--AAA-----GG-------------GG-GAT-TAA---TAGAGGATTCACA--TTTT------------------------TTT---TTAAA-----AATTTAC
gi|11 : actgattatagG-------------GG-GAT-TAA---TAGAGGATTCACA--TTTT-T-----------------------TT---TT--C-----AATTTACACAAACCGG-AAGACAAGCCCCTcnggggattaatagaggattcacatttttttttcaatttacacaaaccggaagacaagccccta
gi|14 : actgattatagtatagtactacttgaagggggtattatttaaacaaagggtaaataaccaaaacgggttggaattgttattagagcgacttcaaagggggattaatagaggattcacatttttttttaaaaatttaccnA-A-AC-GT-GTTGG-------------AAAG-ACTTC--AAA-----GG-------------AATGTT-TTAAAATAGAGGATTCA-A--TTAT-TAT-TA---------T-----CATTT---TT--ATTTTTATTTTCCGCAATCTGA-AAGACAAGCCTCTa
gi|15 : cactttaaagattgcccaaaattt-AC-GT-GTTGGAATTGT-TATCAGAATG-ACCTC--AAAGGGGGGG-------------GG-GGTGTTA---TAGAGGATTCACA--TTTT-T-T-TAAAATTTGTTT-----TATTT---T---------ATTTTGCACAATCCGG-AAGACAAGTCCCTgtgtc
gi|16 : GA-TC-----AA-ATAC-AT-GTTGACATC-T-TATCAGAATG-ACGTC--AAA-----GG-------------GG-ATT-TTC---TAATGGATTCATA-------TAT-TT---------T-----TATTTAAAAT--G-----ACTTTCCACAACCCGG-AAGACAATCCCTTgt
gi|17 : TAGTATCGT-TATCAGAATG-ACTTG--AAA-----GA-------------AG-ATT-TTC---TAGAGGATTCATA--TTTT---T-TA---------T-----TATTT---TC--------------CACCACCCGG-AAGACAATCCCCgt
gi|18 : ttaataccgaatgttcTGAACC-GAGTGGGGG--TGTAT------TTTCCAAGATG------GCGA--C-------------TA-TTGATATAG-TACATGTAC---TATTTG-AAGG-GG----GTGT---TA-TTTA--CACAA-TGT-ATAAATGA-CC-----AA-A-Aggt
gi|19 : GAATTGT-TATCAGAGTG-ACTTC--AAA-----GG-------------GG-TAT-TAA---TAAAGGATTCACA--TTTT-TAT-TA---------------TATTA---TT--A-----
gi|2 : GATAGA-ACGTATGTC-AACCGACGGCAAA-CCC--ATCTCC----------------ATT--T---AGGA---AAACCATC--GCT-GTAGTGA----ATCTAACCA---CG--------ATCAG-CCAA---TAAT------TTGCTAGTTTACAATAC---A-AAACAGGT--GTTAAATC-TAGT-GAGG--TACAT------TTTCCAAGATG------GCGA--CTTTCGG-C----G----------------------------TTG-CAAG-AG----GTGT---TA-TTTA--AACGC-TGT-ATAAATGACCC-----AA-A-AT-GT-GTTGACATCGC-TATCAGAATG-ACTTC--AAA-----GG-------------GG-ATT-TTT---TGGAGGAATCACA--TTTTATATATA---------T-----T-TTT---TT--A-----ATTTTCCACAATCCGA-AATGCAAGCCCCTtatattaatat
gi|20 : cgatttggcgagatgacacactaattgttgatattgtagttctgtttttgtttGATTCACACATTTT-CAT-TA---------TCTTTTTTTTT---TT--G-----ACTTTACACAATCCGG-AAGACAAGCCC
gi|21 : cacta----GTAT---TA-ATTA--CAGGGCTGT-ACAAATGG-CC-----AA-A-AC-GT-ATTGACATCGT-AATCAAACTG-ACTTC--AAA-----GG-------------atatgc
gi|3 : ATAGG-AAGTGTGTC-ACCGGGCGACAAAACAC--A-CACC----------------ATTCTT---AGGA---AA-TCTTC--GCTCGCATTTATATGATCTCTGCA---CG--------ATCGGCCCAA---TAAA------TTGTT-GTTTGGAGTCC---AGAAACGGTT--GGTGAACCTGAGTGGGGT--AATAT------TTTCCAAG-TG------GCGA--CTTTCGTCCCCTTGTACTTGAT-----TATA-GTAC---TACTTGAAAGG-GG----GT-T---TATTTTA--AACGA-TGT-GTAAATGA-CC-----AA-A-AC-GG-GTTGGAAGTGTCTATTAGAGTG-ACTTC--AAA-----AG-------------GG-GAT-TAA---TAGAGGA-TCACA---TTT-TATATA---------T-----TTTTT---TT--A-----ATTTAACACAA-CCGG-AAGACAAGCCCCT
gi|4 : tgaGATAGA-ATGAGTGTC-ACCGGGCGACAAA-CGC--ATCACC----------------ATT--T---AGGA---AAATTTTC--GCT-GCATCAA----ATCTTACCA---CG--------ATCGG-TCAA---TAAA------TTGTTTGTTTAGAGTAC---AGAAACGGGT--GTTGAACT-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGC---TA-TTTA--AACAA-TGT-GTAAATGA-CC-----AA-A-AC-GG-GTTGGAATTGT-TATTAGAGGT-ACTTT--AAA-----GG-------------GG-GAT-TAA---TAAAGGATTAACA--TTTT-TAT-TA---------T-----TATTT---TTG-A-----AATTTACACAATGCGG-AAGACAAGCCCCT
gi|5 : GATAGA-ACTTGTGTAGACCGG-CAACAAA-TAC--A---CC----------------ATG--T---AGGA---ATATCATT--GTT-GTAGCGA----ATCTAACCA---CG--------AATGT-C-------AAA------T--TCA---TGGAGTAC---AGAAAAATGT--ATTGAAC
gi|8 : ttttgaacaggtatgcaagtaccaatattgcgccgtcctggccaatttagtccacagcacggagaagcctgattccaaaacgcaagcttattgtctaaacatacaagtatgaaataaaacaatataaattgaattcttttttaattgatttggtgagatcattgagatgtcattaaaattggtaatgttttctgtttttcatttTT--T---AGGA---AAATCATT--GCT-GCAGTGA----GTCTAAACA---AG--------ATCAA-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACAGGT--GTTGAACC-TAGTGGGG---CATGT------TTTTCAAGATG------GCGA--CTTTCGT-CACTTGTA-CTGATATACATGTA-GTACATTTAGTTA-CAAG-GG----GTGT---TA-TCTA--AATGA-TGT-ATAAATGA-CC-----AA----CTGCTGTTGATATCGT-TATCAGAAAG-ACTTG--AAA-----GG-------------TG-ATT-TTC---TAAAGGAATAACA--TTTT-TAT-T------------------------------------TTT-CACAATCCGGAAAGACAACCCCCTt
blockSeqs : . T G G A . T . CT . . . C TTA TATG G AGT . C . . AG . G . T G . . . C CCTT C ATAGTACAT ATT C A . . . T . C . C . CA T CT T C . . GGGGG . TGT G TAAAA T CA ATA TAAAATTTGTTTTA AAA ATTTTT A A A
blockSeqs : . C . A . . T . . . . . . GTG . A . . . . . TG . G . . G . . . . CCTT . ATACATGTA . C . . . . . . . . . . AT . A A . . . . . AC . TG T . TA TATCTTTTTT . AAA A A .
blockSeqs : . A . G . . T . . . . . . TTT . C . . . . . AG . G . . T . . . . ACTT . TATA . T . . . . . . . . . . A . G A . . . . . GA . AA T . TA ATATTT . GA T C .
blockSeqs : . T . G . . . . . . . . . TCA . T . . . . . A . G . . G . . . . CC . TATA . C . . . . . . . . . . A . T C . . . . . GA . AA T . TA TATCA . C T G .
blockSeqs : . C . . . . . . . . . . . GCG . A . . . . . G . . . . . . . . . . . TATA . C . . . . . . . . . . A . T T . . . . . GG . TA T . CA TTTTA . G C C .
blockSeqs : . . . . . GTG . A . . . . . A . . . . . . A . G . . . . . . . . . . A . T A . . . . . AT . TC T . TA TATTA . A T C .
blockSeqs : . . . . . . . . . . . . . A . T C . . . . . AT . TC T . TA ATATT . A C A .
blockSeqs : . . . . . . . . A . T C . . . . . TA . AA A . TA TATTA . G T A .
blockSeqs : . . A . G A . . . . . AT . TT T . T TATA . A A A .
blockSeqs : . . G A . . . . . GA . AA T . T T . . . . .
blockSeqs : T . . . . . GA . AA A . . . . . . .
blockSeqs : . . . . . . AT . TC . . . . . .
blockSeqs : . . .
blockSeqCons : ** **************** *** *** ** ******** *** ****** AG *** ** G** ****** ****** ** TATA****** **** *** ** ***** ** ************* TATTA***************
originalCons : GATAGA-ACGTGTGTC-ACCGGGCGACAAA-CAC--ATCACC----------------ATT--T---AGGA---AAATCATC--GCT-GCATCGA----ATCTNACCA---CG--------ATCGG-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACGGGT--GTTGAACC-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGT---TA-TTTA--AACGA-TGT-ATAAATGA-CC-----AA-A-AC-GN-GTTGGNATCGT-TATCAGAATG-ACTTC--AAA-----GG-------------GG-GNT-TNA---TAGAGGATTCACA--TTTT-TAT-TA---------T-----TATTT---TT--A-----ANTTTACACAATCCGG-AAGACAAGCCCCT
finalCons : GATAGA-ACGTGTGTC-ACCGGGCGACAAA-CAC--ATCACC----------------ATT--T---AGGA---AAATCATC--GCT-GCATCGA----ATCTNACCA---CG--------ATCGG-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACGGGT--GTTGAACC-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGATTATA------GTAC---TACTTG-AAGG-GG----GTGT---TA-TTTA--AACGA-TGT-ATAAATGA-CC-----AA-A-AC-GN-GTTGGNATCGT-TATCAGAATG-ACTTC--AAA-----GG-------------GG-GNT-TNA---TAGAGGATTCACA--TTTT-TATTATTA---------------TTT---TT--A-----ANTTTACACAATCCGG-AAGACAAGCCCCT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CGGAAGTTTAAAATAACTGAGGCATTGTTGTAAACTCTTTAGAAGGGGAAAGTATGTCAAAATGTTGATAAAAATCTGCACTACATGTTTTATATAGATGCAGGCATAGGTTAGGCAATACAAGGGCTATAGATGTTGTGCGCTAATTCAAAACACTCTATGAACACAAATTATTTTAACAAACCATTATTCTGTTGCCAAGTTATGCTGTTTTAAATCTTTCCTTTCTAACAATTTTCCCCTGCTAGTTCTGTCTCACTCCGTTAACAATGGGAAGCGATTTGCGAGGAGACAGATAAATAATGTTG
Unaligned ( gi|7 ): TTATAAATCAGGGTCATGATTTGGATTTTCACACATGTTTACAAGTACCAAGAAGGCGACCTTGTGGCCAATAGGGACAAGAGCTGGTGCAAAACATAAAGCTCGTTGTCGATTCATACGAGTCTGAAATAATTCATTTTTAATTCAGTTTCTTTCAGACCGATTTTGCGTGATGCCACACACATTAGTGATATATTCGTTCTCGTTTAAAAGAATAATTTATTGGTAAACCCACGTTAAGTACATCATGAAAATGACGATAATCTTTTAATGAAAATATATAAATTCATGTAATTACAG
Unaligned ( gi|9 ): ACCGAAGTTTACAAATAACAAGGCTTGTCTAGAACGCGTAAAAATTTCAAATAAAAAGTATGCACAAATGTTTTACAGATGCAGGCACGGTTAGAGCAATACAAGGTATAAAATACAAATTATTTTAACAAAACATTTTTCTAATGACAATTATGCTGATTTTGATATTTCCATTTCTGACATTTTTCCCTTTAGTCTGTTTCACTTCCGTTCCTTCCAGATCAATTTGGCGAGATGACAAATGTTATGTTGTACCTGTTTTCGTTTGA
Unaligned ( gi|12 ): TTACAGATCCGACAGATCATGATTTGGATTTTCACATTTGTTCAACTATGTGACCAATTCAGACTACAGCAGGGGCAAAGTCTTGGTGCAAAACGCAAGCTCACTGTCTCATCATAGGAATCTAAAATGAGACATGTAATTTGTTCCATCCAAACTGATTTGATGAGATGATACACGTACATTCATCATTTAGAAAAATCA
Unaligned ( gi|13 ): TTACAGATCCGACAGGATCATGATTTGGATTTTCACATTTGTTCAACTATGTGACCAATTCAGACTACAGCAGGGGCAAAGTCTGGTGCAAAACGCAAGCTCACTGTCTCATCATAGGAATCTAAAATGAGACATTGTAATTTGTTCCATCCAAACTGATTTGATGAGATGATACACGTACAT
Unaligned ( gi|22 ): CAATATGGCGAGATGGCATACAAATTGATGATGTTGTACATGTATCTGTTCTAGTTACTGAT
Unaligned ( gi|23 ): CGATTTCGCAAGGTGGCAAATGAATATTGCCGATATTGTACTTGTTTTCGTTTGATAGAAC
Alignments
lowQualScore : 4444444444444444 111 111 1111 111 22222222 111 111111 111 111 111111 111111 1111 2222222222 11111 1111111111111 22222222222222222222 11111111
lowQualScore : 6 2 6 1 6 99 7 4444444444444444 77 000 000 77 5 333 2222 1 000 00000000 5 000 666666 66 000 1 99 6 111 999999 666666 77 5 1111 5 8888888888 888 1 5 5 9999 777 4 66 4 4 4 00000 444 3 44 4 3 3 44 77777 5555555555555 444 3 66666 1 33 444 88888888888888888888 555 77777777 3 4 0 3
lowQualScore : . . . . . .. . ................ .. ... ... .. . ... .... . ... ........ . ... ...... .. ... . .. . ... ...... ...... .. . .... . .......... ... . . . .... ... . .. . . . ..... ... . .. . . . .. ..... ............. ... . ..... . .. ... .................... ... ........ . . . .
lowQualScore : 7 2 7 0 7 22 3 2222222222222222 99 000 000 99 7 111 1111 0 000 77777777 7 000 444444 00 000 0 22 7 777 222222 444444 99 7 1111 7 0000000000 888 4 0 0 4444 888 4 11 4 4 0 00000 888 6 66 0 1 1 22 77777 7777777777777 111 1 11111 7 99 222 77777777777777777777 444 66666666 3 3 5 6
consensus : GATAGA-ACGTGTGTC-ACCGGGCGACAAA-CAC--ATCACC----------------ATT--T---AGGA---AAATCATC--GCT-GCATCGA----ATCTNACCA---CG--------ATCGG-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACGGGT--GTTGAACC-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGT---TA-TTTA--AACGA-TGT-ATAAATGA-CC-----AA-A-AC-GN-GTTGGNATCGT-TATCAGAATG-ACTTC--AAA-----GG-------------GG-GNT-TNA---TAGAGGATTCACA--TTTT-TAT-TA---------T-----TATTT---TT--A-----ANTTTACACAATCCGG-AAGACAAGCCCCT
Reference ( family-699 ) : GATAGA-ACGTGTGTC-ACCGGGCGACAAA-CAC--ATCACC----------------ATT--T---AGGA---AAATCATC--GCT-GCATCGA----ATCTNACCA---CG--------ATCGG-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACGGGT--GTTGAACC-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGT---TA-TTTA--AACGA-TGT-ATAAATGA-CC-----AA-A-AC-GN-GTTGGNATCGT-TATCAGAATG-ACTTC--AAA-----GG-------------GG-GNT-TNA---TAGAGGATTCACA--TTTT-TAT-TA---------T-----TATTT---TT--A-----ANTTTACACAATCCGG-AAGACAAGCCCCT
gi|1 : TAGATATGTGTGTC-ACCGGGCGACAAA-AACTTATCATCTTTATGGGCATATAATATT--TTAAAGAATAAAAATCATCTCGCT-GCATTAA----ATCTTCCTG---CATTTCCTGCATCGG-GTAAGTATAAAAAAAAATTGTAAGTTGAGCTTACCCAAAAAACGGGTCTGTT--ACT-GAGTGGGGGCCTAAATAATTTCTTTCCAAAAGGTATTTTGCGAAACTTCCGT-CCATTGTA-TTGAT-----TAC-----T---TGATTG-ATGGTAGCTTTGTGTCTATG-TTTCTTAACGA-TGTGATAAATGA-CCGTTGTGG-T-AC-GG-GTTTGTGTATT-T---AGGATGAATTTCCAAAA-----GGATTGTGTTTGTGTGG-CAT-TAA---TAGA-GATTCACA--TTTT-TAT-TAT--------T-----TTTTT---TT--A-----AATTTAAACAATCCGG-AAGACAAGCCCCT
gi|10 : ggagATAGA-ATGAGTGTC-AACTGGCAACAAA-CAC--ATCATA----------------TTT--T---CGGA---AAACCATT--GCT-GCATTAA----ATCTGACAAAGTCT--------GTCAT-CCAA---TAAA------GTGATA---TAAAGTGC---atgggaataaccaccattatgacgatggctcattcatcctt
gi|10 : attTG------GTGA--CTTTCGT-CCC--GTA-TTGGT--------A-GTAT---TACTTG-CAGG-GG-----TGT---TA-TTCA--AACGA-GGT-AGAAATTA-CC-----AACA-AC-GA-GTTGATATCGC-TATCAGAATG-ACTTC--AAA-----CG-------------GG-ACT-TTG---TAGACCA-TAATA--TTTT-Ttagttttgtggtgactttcgtcccgtattggtagtattacttgcaggggtgttattcaaacgaggtagaaattaccaacaacgagttgatatcgctatcagaatgacttcaaacgggactttgtagaccataatattttt
gi|11 : attatagaatgagtgtcaactggcaacaaacacatcatattttcggaaaaccattgctgcattaaatctgacaaagtctgtcatccaataaagtgatataaagtgctagttttg-----TATA-GTAC---TACTTG-AAGG-GG----GTAT---TA-TTTA--AACAA-AGG-GTAAATAA-CC-----AA-A-AC-GG-GTTGGAATTGT-TATTAGAGCG-ACTTC--AAA-----GG-------------GG-GAT-TAA---TAGAGGATTCACA--TTTT------------------------TTT---TTAAA-----AATTTAC
gi|11 : actgattatagG-------------GG-GAT-TAA---TAGAGGATTCACA--TTTT-T-----------------------TT---TT--C-----AATTTACACAAACCGG-AAGACAAGCCCCTcnggggattaatagaggattcacatttttttttcaatttacacaaaccggaagacaagccccta
gi|14 : actgattatagtatagtactacttgaagggggtattatttaaacaaagggtaaataaccaaaacgggttggaattgttattagagcgacttcaaagggggattaatagaggattcacatttttttttaaaaatttaccnA-A-AC-GT-GTTGG-------------AAAG-ACTTC--AAA-----GG-------------AATGTT-TTAAAATAGAGGATTCA-A--TTAT-TAT-TA---------T-----CATTT---TT--ATTTTTATTTTCCGCAATCTGA-AAGACAAGCCTCTa
gi|15 : cactttaaagattgcccaaaattt-AC-GT-GTTGGAATTGT-TATCAGAATG-ACCTC--AAAGGGGGGG-------------GG-GGTGTTA---TAGAGGATTCACA--TTTT-T-T-TAAAATTTGTTT-----TATTT---T---------ATTTTGCACAATCCGG-AAGACAAGTCCCTgtgtc
gi|16 : GA-TC-----AA-ATAC-AT-GTTGACATC-T-TATCAGAATG-ACGTC--AAA-----GG-------------GG-ATT-TTC---TAATGGATTCATA-------TAT-TT---------T-----TATTTAAAAT--G-----ACTTTCCACAACCCGG-AAGACAATCCCTTgt
gi|17 : TAGTATCGT-TATCAGAATG-ACTTG--AAA-----GA-------------AG-ATT-TTC---TAGAGGATTCATA--TTTT---T-TA---------T-----TATTT---TC--------------CACCACCCGG-AAGACAATCCCCgt
gi|18 : ttaataccgaatgttcTGAACC-GAGTGGGGG--TGTAT------TTTCCAAGATG------GCGA--C-------------TA-TTGATATAG-TACATGTAC---TATTTG-AAGG-GG----GTGT---TA-TTTA--CACAA-TGT-ATAAATGA-CC-----AA-A-Aggt
gi|19 : GAATTGT-TATCAGAGTG-ACTTC--AAA-----GG-------------GG-TAT-TAA---TAAAGGATTCACA--TTTT-TAT-TA---------------TATTA---TT--A-----
gi|2 : GATAGA-ACGTATGTC-AACCGACGGCAAA-CCC--ATCTCC----------------ATT--T---AGGA---AAACCATC--GCT-GTAGTGA----ATCTAACCA---CG--------ATCAG-CCAA---TAAT------TTGCTAGTTTACAATAC---A-AAACAGGT--GTTAAATC-TAGT-GAGG--TACAT------TTTCCAAGATG------GCGA--CTTTCGG-C----G----------------------------TTG-CAAG-AG----GTGT---TA-TTTA--AACGC-TGT-ATAAATGACCC-----AA-A-AT-GT-GTTGACATCGC-TATCAGAATG-ACTTC--AAA-----GG-------------GG-ATT-TTT---TGGAGGAATCACA--TTTTATATATA---------T-----T-TTT---TT--A-----ATTTTCCACAATCCGA-AATGCAAGCCCCTtatattaatat
gi|20 : cgatttggcgagatgacacactaattgttgatattgtagttctgtttttgtttGATTCACACATTTT-CAT-TA---------TCTTTTTTTTT---TT--G-----ACTTTACACAATCCGG-AAGACAAGCCC
gi|21 : cacta----GTAT---TA-ATTA--CAGGGCTGT-ACAAATGG-CC-----AA-A-AC-GT-ATTGACATCGT-AATCAAACTG-ACTTC--AAA-----GG-------------atatgc
gi|3 : ATAGG-AAGTGTGTC-ACCGGGCGACAAAACAC--A-CACC----------------ATTCTT---AGGA---AA-TCTTC--GCTCGCATTTATATGATCTCTGCA---CG--------ATCGGCCCAA---TAAA------TTGTT-GTTTGGAGTCC---AGAAACGGTT--GGTGAACCTGAGTGGGGT--AATAT------TTTCCAAG-TG------GCGA--CTTTCGTCCCCTTGTACTTGAT-----TATA-GTAC---TACTTGAAAGG-GG----GT-T---TATTTTA--AACGA-TGT-GTAAATGA-CC-----AA-A-AC-GG-GTTGGAAGTGTCTATTAGAGTG-ACTTC--AAA-----AG-------------GG-GAT-TAA---TAGAGGA-TCACA---TTT-TATATA---------T-----TTTTT---TT--A-----ATTTAACACAA-CCGG-AAGACAAGCCCCT
gi|4 : tgaGATAGA-ATGAGTGTC-ACCGGGCGACAAA-CGC--ATCACC----------------ATT--T---AGGA---AAATTTTC--GCT-GCATCAA----ATCTTACCA---CG--------ATCGG-TCAA---TAAA------TTGTTTGTTTAGAGTAC---AGAAACGGGT--GTTGAACT-GAGTGGGGG--TATAT------TTTCCAAGATG------GCGA--CTTTCGT-CCCTTGTA-TTGAT-----TATA-GTAC---TACTTG-AAGG-GG----GTGC---TA-TTTA--AACAA-TGT-GTAAATGA-CC-----AA-A-AC-GG-GTTGGAATTGT-TATTAGAGGT-ACTTT--AAA-----GG-------------GG-GAT-TAA---TAAAGGATTAACA--TTTT-TAT-TA---------T-----TATTT---TTG-A-----AATTTACACAATGCGG-AAGACAAGCCCCT
gi|5 : GATAGA-ACTTGTGTAGACCGG-CAACAAA-TAC--A---CC----------------ATG--T---AGGA---ATATCATT--GTT-GTAGCGA----ATCTAACCA---CG--------AATGT-C-------AAA------T--TCA---TGGAGTAC---AGAAAAATGT--ATTGAAC
gi|8 : ttttgaacaggtatgcaagtaccaatattgcgccgtcctggccaatttagtccacagcacggagaagcctgattccaaaacgcaagcttattgtctaaacatacaagtatgaaataaaacaatataaattgaattcttttttaattgatttggtgagatcattgagatgtcattaaaattggtaatgttttctgtttttcatttTT--T---AGGA---AAATCATT--GCT-GCAGTGA----GTCTAAACA---AG--------ATCAA-CCAA---TAAA------TTGTTAGTTTAGAGTAC---AGAAACAGGT--GTTGAACC-TAGTGGGG---CATGT------TTTTCAAGATG------GCGA--CTTTCGT-CACTTGTA-CTGATATACATGTA-GTACATTTAGTTA-CAAG-GG----GTGT---TA-TCTA--AATGA-TGT-ATAAATGA-CC-----AA----CTGCTGTTGATATCGT-TATCAGAAAG-ACTTG--AAA-----GG-------------TG-ATT-TTC---TAAAGGAATAACA--TTTT-TAT-T------------------------------------TTT-CACAATCCGGAAAGACAACCCCCTt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CGGAAGTTTAAAATAACTGAGGCATTGTTGTAAACTCTTTAGAAGGGGAAAGTATGTCAAAATGTTGATAAAAATCTGCACTACATGTTTTATATAGATGCAGGCATAGGTTAGGCAATACAAGGGCTATAGATGTTGTGCGCTAATTCAAAACACTCTATGAACACAAATTATTTTAACAAACCATTATTCTGTTGCCAAGTTATGCTGTTTTAAATCTTTCCTTTCTAACAATTTTCCCCTGCTAGTTCTGTCTCACTCCGTTAACAATGGGAAGCGATTTGCGAGGAGACAGATAAATAATGTTG
Unaligned ( gi|7 ): TTATAAATCAGGGTCATGATTTGGATTTTCACACATGTTTACAAGTACCAAGAAGGCGACCTTGTGGCCAATAGGGACAAGAGCTGGTGCAAAACATAAAGCTCGTTGTCGATTCATACGAGTCTGAAATAATTCATTTTTAATTCAGTTTCTTTCAGACCGATTTTGCGTGATGCCACACACATTAGTGATATATTCGTTCTCGTTTAAAAGAATAATTTATTGGTAAACCCACGTTAAGTACATCATGAAAATGACGATAATCTTTTAATGAAAATATATAAATTCATGTAATTACAG
Unaligned ( gi|9 ): ACCGAAGTTTACAAATAACAAGGCTTGTCTAGAACGCGTAAAAATTTCAAATAAAAAGTATGCACAAATGTTTTACAGATGCAGGCACGGTTAGAGCAATACAAGGTATAAAATACAAATTATTTTAACAAAACATTTTTCTAATGACAATTATGCTGATTTTGATATTTCCATTTCTGACATTTTTCCCTTTAGTCTGTTTCACTTCCGTTCCTTCCAGATCAATTTGGCGAGATGACAAATGTTATGTTGTACCTGTTTTCGTTTGA
Unaligned ( gi|12 ): TTACAGATCCGACAGATCATGATTTGGATTTTCACATTTGTTCAACTATGTGACCAATTCAGACTACAGCAGGGGCAAAGTCTTGGTGCAAAACGCAAGCTCACTGTCTCATCATAGGAATCTAAAATGAGACATGTAATTTGTTCCATCCAAACTGATTTGATGAGATGATACACGTACATTCATCATTTAGAAAAATCA
Unaligned ( gi|13 ): TTACAGATCCGACAGGATCATGATTTGGATTTTCACATTTGTTCAACTATGTGACCAATTCAGACTACAGCAGGGGCAAAGTCTGGTGCAAAACGCAAGCTCACTGTCTCATCATAGGAATCTAAAATGAGACATTGTAATTTGTTCCATCCAAACTGATTTGATGAGATGATACACGTACAT
Unaligned ( gi|22 ): CAATATGGCGAGATGGCATACAAATTGATGATGTTGTACATGTATCTGTTCTAGTTACTGAT
Unaligned ( gi|23 ): CGATTTCGCAAGGTGGCAAATGAATATTGCCGATATTGTACTTGTTTTCGTTTGATAGAAC