lowQualScore : 11111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 5555555 11111 111111111 22222222 11111111 33333 1111 1111 1111111111111111 666666666666666666666666666666666 3333333333333333333333333333333 3333333333333333333333333 4444444444444444 1 44444444444 11111111 33333333333333 111111111111111 11111111111111 222222222222222222222222 444444444 222 555555555555555 111 11111 111111 111111111 11111111 11111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111 11 22222222222222222222222222222 1111111111111111111 1111111 333333333333333333333333333333333333333333 1111111111111 11111 55555555555555555555555 333333333333333333333333 111111111111111 333333333333 333333333333333333333333333 11 666666666666666666666666666666666666666666 2222 1111111111111111 3333333333333333333333333333333333333333333333333333 11111 22222222222222222222222 11111111 777777777777777777777777777777777777777777777777777777777777777777777777 3333333333333333 5555555555555555555555555555555555 5555555555555555 11 111 111111111 5555555555555555555555555555555555555555555 111 222222222 1 11111111 1 222 2222222 111 333333 11111 33333333333333333333333333333333333333333333 11111 5555555555555555555 55555555555555555 22222222 6666 222222 3 444444 0000000000000000000000000000000000000000000000000000000000000000000000 4
lowQualScore : 1 66 77 9 5555555 7777 2 6 3 00000 3 777 44 3 44 7 33 2 66 555555555 00000000 444 2 77777777 1 5 2 33333 0 0 22 888 2 3333 5555 0 0 8888888888888888 1 88 000000000000000000000000000000000 2 3 44 2 44 4444444444444444444444444444444 3 3 33 6666666666666666666666666 1 2 3 66666 2 2222222222222222 2 2 2 3 444 55555 22 2 88888888888 2 2 0 2 33 6666 2 44444444 555 22222222222222 44 3 777777777777777 66666666666666 88 55 777777777777777777777777 555555555 2 000 33 77 33 444 666666666666666 5555 33 444 4444 0 0 22 2 66666 555555 55 22 2 111111111 1 1 99999999 44 1 1 77777 2 2 88 55 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 777 4 99 2 2 111111 55 22222222222222222222222222222 88888 2 7777 999 33 55 7777777777777777777 33 66 444 7 0000000 222222222222222222222222222222222222222222 9999 55555 4 9999999999999 2 33333 77777777 2 22222222222222222222222 888888888 22 88888888 000000000000000000000000 1 22 1 3 333333333333333 1 000000000000 44 1 1 7777 22 1 999999999999999999999999999 333 888 22 99 1 22 888888888888888888888888888888888888888888 1111 7777777777777777 33 2 2 5555555555555555555555555555555555555555555555555555 33 2 2 6666 55555 77777777777777777777777 4 2 66666666 44 333333333333333333333333333333333333333333333333333333333333333333333333 55555 2 2 2 2 2 2 2 3 4444444444444444 3333333333333333333333333333333333 3 3 6 5555555555555555 3 00 333 3 44 3 3 666666666 666 7777 44 3 55 4 4444444444444444444444444444444444444444444 8888 1 4 0 66 4 888 222222222 66 5 5 0 0 11111111 5 0 5 555 5 2222222 0 6 888 1 444444 55 5 44444 55555555555555555555555555555555555555555555 55555 8 8 1 6666666666666666666 3 8 33333333333333333 99999999 7 5555 111111 0 8 2 3 8 222222 2222222222222222222222222222222222222222222222222222222222222222222222 0 6
lowQualScore : . .. .. . ....... .... . . . ..... . ... .. . .. . .. . .. ......... ........ ... . ........ . . . ..... . . .. ... . .... .... . . ................ . .. ................................. . . .. . .. ............................... . . .. ......................... . . . ..... . ................ . . . . ... ..... .. . ........... . . . . .. .... . ........ ... .............. .. . ............... .............. .. .. ........................ ......... . ... .. .. .. ... ............... .... .. ... .... . . .. . ..... ...... .. .. . ......... . . ........ .. . . ..... . . .. .. ............................................................................................................................................................................................................................................................................... ... . .. . . ...... .. ............................. ..... . .... ... .. .. ................... .. .. ... . ....... .......................................... .... ..... . ............. . ..... ........ . ....................... ......... .. ........ ........................ . .. . . ............... . ............ .. . . .... .. . ........................... ... ... .. .. . .. .......................................... .... ................ .. . . .................................................... .. . . .... ..... ....................... . . ........ .. ........................................................................ ..... . . . . . . . . ................ .................................. . . . ................ . .. ... . .. . . ......... ... .... .. . .. . ........................................... .... . . . .. . ... ......... .. . . . . ........ . . . ... . ....... . . ... . ...... .. . ..... ............................................ ..... . . . ................... . . ................. ........ . .... ...... . . . . . ...... ...................................................................... . .
lowQualScore : 0 00 99 6 9999999 7777 0 7 3 77777 8 555 22 1 22 1 77 5 33 000000000 22222222 444 5 77777777 1 0 5 44444 6 1 99 222 9 1111 0000 2 5 8888888888888888 2 55 666666666666666666666666666666666 9 1 88 9 22 7777777777777777777777777777777 1 3 99 3333333333333333333333333 3 7 1 77777 7 3333333333333333 7 7 7 2 444 88888 33 2 77777777777 5 7 5 9 77 4444 9 77777777 888 33333333333333 22 1 444444444444444 00000000000000 66 00 333333333333333333333333 444444444 9 444 77 11 44 444 222222222222222 0000 11 111 5555 5 5 99 1 66666 999999 55 88 0 555555555 8 8 55555555 33 8 9 11111 5 5 00 99 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 444 5 55 0 0 777777 55 66666666666666666666666666666 22222 2 7777 000 22 66 1111111111111111111 44 99 444 5 5555555 999999999999999999999999999999999999999999 5555 33333 2 3333333333333 0 88888 44444444 0 33333333333333333333333 999999999 55 44444444 111111111111111111111111 8 55 8 6 555555555555555 8 777777777777 66 8 7 2222 44 7 555555555555555555555555555 555 777 99 44 4 99 333333333333333333333333333333333333333333 2222 1111111111111111 99 7 7 0000000000000000000000000000000000000000000000000000 11 2 2 9999 66666 99999999999999999999999 7 1 55555555 88 111111111111111111111111111111111111111111111111111111111111111111111111 33333 1 1 1 2 2 4 4 8 1111111111111111 2222222222222222222222222222222222 3 3 7 0000000000000000 6 55 888 3 66 3 3 777777777 888 1111 66 6 00 0 9999999999999999999999999999999999999999999 5555 3 0 7 11 4 333 555555555 99 0 0 0 8 66666666 0 0 0 111 0 6666666 5 7 777 0 888888 99 7 33333 00000000000000000000000000000000000000000000 00000 0 0 4 6666666666666666666 2 0 00000000000000000 00000000 8 8888 666666 8 0 0 2 0 000000 3333333333333333333333333333333333333333333333333333333333333333333333 0 0
consensus : TGTATGGGACTCAN-AT--CAGAGTAATTAAAAAA-T--TTCTGAAAA----TGAGTG-AAA-TG--GATAGCACTGN--A--T-TCG--TTTTGACA--GA-AAT-GG-ACA-----TTTTTT---G--ATA---GG-TTCGT----GAGTTCGTTTCCA-T-GGTAA----CGACCATCAAAC-ATA--CC-CTN-C-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----TC--TCAAACAAAGCGTG---GAGNT--A-CA-----------TCA--AGAGT-AA-T-AA-A--AA-----AT-----ATCT-N---A-A-AA----TG-ANT--GAAA------TAGG--TA-G--A-TGGT-ATT-TGNTTTAT-----CAGAA-A---A-GG-----CA--TTT-T-T-AGATAG---GTT---C-GCGGGTTCGTTTC--CAT------GGT-AAC-GACCATCAAAC--ACGCCC-TT----GCTGGAGA---C----ATC-A-A---AT--T-C----------A----AA------A-------CCTGTC--A--AA-CG------G-AAGTAC---A-A-ACTGAC--GTN----A-GAGTAA-TTAAAA--AA-ATCT--AAAA---AT--AC-----T---TGA----AATA--GATAGNATTG----TATTTG--TTTT-A-TC-NGAAAAN-GG-CA--TT--T-T----TT---AGA-TA-GGTT-NA-----TG--AGTTCGTTTCCA-T-GGT--A--C-G-A-CCATC--A-------A------C----C----CC----C--CCTG-----A----AAACATC-A-AA--TTC-A--------A----------AAC--C---TGTC--AAAAGGGAAA-TATG-----N--GACTGACGCCAGAGTAATTAA----AN-AA--T-C-----NAAA-A-A---CGAGT--G-AAAT--G---TAN-------A--GCATTGNATTTG-TT----T-----A-C----AG---N-----AA--G-----T----CT--TT-TTT---AGATAGGTTCGTGAGTTCGTTTCCAT-GGTA-ACG---A-CCATC--AA--C------AT----A-C---C-T-T--GCTGA---AGAC-A---TCATA-AT--T--C----------A--------A--AAC--C---TGTC-AAAA-NG---AA--GCGC---G-A-A-CTGATA-TN--AGAGT--A--NT----TAA----AA-----A-AT----T----CT--A-AAA-----TGA-TT-----GAA-AT--ANATA---G---N-A-TANT-ATT--------CGT--T--------TT-----AN---CAN-----------A-AA--A-A-G-G--A----T--T--T-TTT----AG---A-ATA-GGT-TCG--TG--AGTTCGTTTCC-ATTG-GT--A-CGA--N-C-GC--C---A---AAC---ATAC--CC-TTGCTG--GAGAC---AT-C-ATAA--T-CACTGAAATTGGCCA--------TGTC-N--AA-C--G-G-AAN-CG--T--GGGACTG-AC---A-TAA---NA--GC--A----TT--T--N--A----AAA--T-GTC---A--A-A-AA----T-----GAGT--G-ANA--G--G-A------TAGCA-T----NG--TATTTATT--T---T--N-T---A--G-A-AA-G-G-----G----T-A--T---T-TT-T-A-G-NTA-GTT---T----TTGT-----GAGTTCGTT-TCCAT-G-GTA-A-C-G-ATAATCAAA-T--ATGTCAA-----TTGCCG-A-G-A----CG--A----AA-T-G-T-ATT---CAAAACC-TGTC-AAAA-AGAA--A--TTGAG---G--GAC-TGACACCAGAGN-AA-T-AA-A--A-A-A---------T-C-TAA----A--AA-T--GA-GC-G-A------A-TAGGA-TA-----GA-------A-TATTATT----TTGTT-TTAG--C-AG---AAAG--G---TACTT--TT-T-A-GTTA----CA--T-GT-A-GGA-T-CGTTTCC-ACG-GTAACA-ATAAT-AATAAAAAAAAA----ACTTGCTGA-AA-ACG-----TC-----------------ATTCCTCA-A-A---CCTG--------TCAAAAACG--AAGT-G-CAACCCTCTAA--C-A--------------CCCCTNCC-CCTTGT--------------G--CCTGAA--------AATTTGAGAAAAAAA---CACAGTTCGGGTGTTT-A---ATAG-TTATACGCA-G--CAA-AAATATTGAGCAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAC-CTAGCTCAGACGGAATA
Reference ( gi|1 ) : TGTATGGGACTCAG-AT--CAGAGTAAATAAAAAAATG-CTCTGAAAA----TGAGTG-AAA-TG--GGTAGCACTGG--A--T-TTG--TTTTGACA--GA-AAT-GG-ATA-----TTTTTT---G--ATA---GG-TAAAT----GAGTTCGTTTCCA-T-GGTAA---CCGACCATCAAAC-ATA--CC-CTA-C-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----TC--TCAAACAAAGCGTA---GAAAT--A-CA-----------TCA--AGAGT-AA-T-AA-A--AA-----AT-----ATCT-T---A-A-A-----TG-ACT--GAAA------TACG--TA-A--A-TGAT-ACT-TAATTTAT-----CAGAA-A---ATAA----TCA--TTT-T-T-AGAAAG---GTT---T-GCAGGTTCGTTCC--C--------GGT-AAC-GATCACCAAAC--ACGCGC-TT----GATAGAGA---C----AT--A-A---AT--T-C----------A----AA------A-------CCTGTC--A--AA-CG------G-AAGTAC---A-A-ACTGAT--TGG----A-GAGTAAATTAAAA--AA-ATCT--AAAA---A---AC-----T---TGA----AATA--GATTGTATTG----TATTTG--TTTT-A-TC-TGAAAAG-GG-CA--TT--T-T----TT---AGA-TA-GGTT-GA-----TG--AGTTCGTTTCCA-T-GGT--A--C-G-A-CCATC--A-------A------C----C----CC----C--CCTA-----A----AAACATC-A-AA--TTC-A--------A----------AGC--C---TGTC--AAAAGGGAAA-TATG-----T--GACTGACCCTGGAATAATTAA----TC-AA--T-C-----AAAA-A-A---C-AGT--G-AATT--G---TAA-------A--GCATTGAATTTA-TT----T-----A-C----AG---T-----AA--G-----T----CT--TTATTT---AAATAAGTTTGTGAGTTTGTTTCCAT-GGTA-ACG---G-CCATC--AA--T------AT----A-C---C-T-T--CCTAA---AAAC-A---CCATA-AT--T--C----------A--------A--AGC--C---TGTC-AAAA-AG---AA--GTAT---A-A-A-TTGGTA-TG--GGAGT--A--TC----TAA----AA-----A-AT----T----CT--A-AAA-----TAA-TT-----GAA-AT--CTAT----G---C-A-TATC-ATT--------CGT--T--------TT-----AG---CAT-----------A-AA--A-A-G-G--A----T--T--T-TTT----AA---ACATA-GGT-TCG--TG--AGTTCGTTTCC-ATTG-GT--A-CGA--A-C-GC--T---A---AAC---ATAC--CC-ATGCTG--GATAC---AT-C-ATAA--T-CACTGAGATTGGCCA--TA----TGTC-T--AA-C--G-G-AAC-CG--T--AGGATTG-AC---A-TAA---TA--GC--A----TT--T--C--A----AAA--T-GTC---A--A-A-AA----T-----GAGT--A-ACA--G--G-A------TAGCA-T----AA--TATTTATT--T---T--C-T---A--G-A-AA-G-G-----G----T-G--T---T-TT-C-A-G-CTA-GTT---T----TTGT-----GAGTTCGTT-TCCAT-G-GTA-A-C-G-ATAATCAAA-T--ATGTCAA-----TTGCCG-A-G-A----CG--A----AA-T-G-T-ATTA--CAAAACC-TGTC-AAAA-AGAA--A--TCGAG---C--GAC-TGACACCAGAAG-AA-T-AA-A--A-A-A---------T-C-TAA----A--AA-T--GA-GC-G-A------G-TAGGA-TA-----GA-------A-TATTATT----TTGTT-TTAG--C-AG---AAAG--G---TTCTT--TT-T-A-GTTA----CA--T-GT-A-GG--T-CGTTT-C-ACA-GTAACA-ATAAT-GATAAAAAAAAG----GCTTGCTGA-AA-ACG-----TC-----------------AT---------A---CC-G--------TCAAAAACG--AAGT-G-CAACCCTCTAA--C-A--------------CCCCTCCC-CCTTGT--------------G--CCTGAA--------AATTTAAGGAAAAAAAACCACAGTTCGGGTGTTT-A---ATAG-CTA-ACGCA-G--C---AAATATTGAGCAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACTCTAGCTCAGATGGAATA
gi|2 : TGTATGGGACTTCA-AT--CAGAGTAATTAAAA---TT-TTCTAAAAA----TGAGTGAAAA-TG--GGTAG-ACTGG--A--T-TTG--TTTTGACA--GA-AAT-GG-ACA-----TATTTT---T--ATA---GG-TTCGT----GAGTTCGTTTCCA-T-GGTAA---CAACCCAT-AAAC-AT----C-CTC-C-CTGGAAACACAATAATTCACTGAAATTGACCTC-C-----TC--TCAAACAAAGCGTG---GGGTTC-A-CA-----------TCA--GTAGT-AA-T-AA-A--AT-----AT-----ATCT-TA--A-A-A-----TG-ACT--AAAA------TAGG--TT-A--A-TG-------TAAT--------------------------------TTT-T-T-AGATAG---GTT---T-GCAGGTT-GTTTC--CAT------GGT-AAC-GATCCACAAAA--ACGCGC-TT----GATGGGGA---C----ATC-A-A---AT--T-TAATAAAAAAAA----AA------A-------CC-GTC--A--AA-TC------G-AAGAAC---A-AGACTGAT--GTC----A-GAGT-AATT-AAA--AA-TTCT--AAAA---AT--AC-----T---TAA----AATA--GATAGTATGG----TATTTG--TTTT-ATTC-TGAAAA--GG-CA--TT--T-T----TA---AAA-TA-GGTT-AA-----TG--AGTTTGTTTCCA-T-GGT--A--C-G-A-ACGCCA-A-------A------CATAAC----CT----T--GCTG-----G----AGACATC-ATAA--TTT-ACTG-----AGATT------GGC--CACATGTC--TAAACGGAAC-CGTA-----G--GATTGAT------ATAAT--A----GC-AATTT-T-----AAAA-A-G---T-AA---A-AATG--A---TAACATGGATA--GCATAATATTTATTT----T-----ATC----AA---A-----AA--G-----G----GTGATT-TTC---AGCTAGTTTTGTGAGCTCGTTTCCAT--GTAGACG---A-TAATC--AA--T------AT----G-T---CAT-T--GCCGA---AGAC-G---AAATGTAT--T--C----------A--------A--AAC--C---TGTC-AAAG-AG---CA--TGAG---G-G-A-CTGACA-CC--AAAAG--A---------AA----AA-----A-AA----T----CT--G-AA-------AA-TTGAGGCGAA-AT--AGATA---G---A-A-T-TT-ATT--------TGT--T--------TT-----AG---C-------------G-AA--A-A-G-AT-A----C--T--T-TTT----AAGTTACAT--------G--TA--GGATCGTTTCC----------A-CGA--A-C-AA--T---A---AA
gi|8 : ggaTGTATGGGACTCA--AT--CAGAGTAATTAAAA---TG--TCTGAAAA----TGAGTG-AAAATG--GGTAGCACTGG--AAGTATTG--TTT--ACA--GA-AAT-GG-ACA-----TTTT-----A--ATA---G--TATGT----GAGTTCGTTTCCA-T-G-TAA---CGGACCATCAAAC-ATA--AC-CTA-C-CT-GAAACACCA-AATTTACTGAAAATGACCAC-C-----TC--TCAaaaaaaaaacttgctgaaacgtcgttcctcaaaacctgtcaaaaaaagtgcaaccctctaagtcccccccaccccctgtgcctgaaaatttgagaaaaaacaagttcggatttttaaatagttatacgcagcaaaaaatattgagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcctactcagacggatatgaataacccctcgttcaacagaaattatactttgcggtattatcacatgaatatttctacagaataataaatactgtacagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagtctcagacatttttctctgtcacatacatgtgtaataaaaacaaatccaaca
gi|19 : ggataaaTGTATGGGACTCAG-AT--CAGAGTAATTAAAA---CT-TTCTGAAAA----TGAGTG-AAA-TG--GGTAGCACTGG--A--T-TTG--TTTTGACA--GA-AAT-GG-ACATCTATTTTTTT---G--ATA---AG-Ttcttaaatgacttgaaaatagttaaattacttaatttatcagaaaaggattatttagatagttgcaggttcgttccatgtaacgatcaccaaaaacgcgcttgatggagacatcaagattcaaaacttgtcaaagcggaagttcaagactgatgtcagagtaattaataaaatgtaaaaatacctgaaatagatagtattgtaattgtttta
gi|24 : TGTATGAAACTGAC-AT--CAGAGTAATTAAAAAA----TTCTGAAAA----TGAGTG-AAA-TG--GATAGCACTGA--A--T-TTATTTTTTAACA--GA-AAT-TG-ACA-----TTTTtc
gi|13 : aggaTATTGGACTCAGCACTCCAGAGTA--TAAAAT--TGTCTCTGAAAA----TGAGTG-AAA-TGTCGGTAGCACTGG--A--T-TTT--TTTTGACA--GA-AAT-GGAACA-----TTTTTT---G--AT----GG-TGCGT----GAGTTCG-TTCCA-TAGGTAA----CGACCATCAAAC-ATA--CC-CTA-CTCTGGAAACACCATAATTCACTGAAATTGACCAC-CT----TC--TCAA--AAAGCCGG---GGGTC--A-CA-----------TCAGCAGATT-AA-T-AA-
gi|20 : tATAAGACTGAT-TT--CAAAGTAA-TAAAAATAT--CT-TGAAAA----T-ACTGGAAA-TA--TATAGTATTGT--A--T-TTG--TTTT-------A-TAT-GA-A-------------------AAA---GG-TTAAT----GAGTTCGTTTCCA-T-GGT
gi|18 : aca--CAGAGTAATTAAAAAA----TTCTAAAAAAAAATAATTG-AAA-TA--TATAGAATAGC--A--T-TCG--TTTCAACG--GA-AAAAGG-ATT-----TTTTTTTTAG--ATA---AG-TTCGT----GAGTTCGTTTCCA-T-GGTAA---
gi|7 : AGAGTAATTAAAAA-----TTCTAAAAA----TGATTC-AAA-TA--TATAGAACATC--A--T-TCG--TTTTAACATAAA-AAA-GG-AT------TCTTTTAAAG--ATA---GT-TTAAT----GGGTTCGCTTCCA-T-GGTAA---C-GAACGCCAAAC-ATATACC-CTT-G-CTGGAGAGATCATAATTCACTGAGATTGGCC
gi|15 : ttggtgtgAAAAAT---TCTAAAAA----TGAGAG-AAA-TA--AATAGCATTGT--A--T-TCA--TTTTAACG--GA-ATT-TG--CA-----TTTT--------GTA---GG-TAGATTCGTGAGTTCGTTCCCA-T-GTTAA----CGAAAATCAAAC-ATA--CC-CTT-C-CTGGAGACAT--GGATTCTCTGAAATTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgtgagttcgtttccatggtaaagataattaaatatggcattgccgaagacgaaatgtattcaaaacctgtcaaaagagcatgagggacgactgacaccaaaatctaaaaatgagcgaaatagataaaattttatttgttttatcaacaaaagtactttttaggttagatgtaggatcgtttccacgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|8 : aaggatgcgtgaggctgacaataaagttactgtagttcAAATG-ACTTGAAAA----T-AGTT-AAA-T--------TACTTA--A--T-TTA--T-----CA--GA-AAA-GG-AT------TATTTA---G--ATA---GT-TGCA------GGTTCG-TTCCA-T--GTAA----CGATCACCAAAA-ACG--CG-CTT-G-ATGGAGACATCAAGATTCA--AAACTTG------------T--------CAAAGCG-----GAAGT--T-CAAGACTGATG--TC---AGAGT-AATT-AATA--AA-----AT-----GTA--A---A-A-A-----TA-CCT--GAAA------------TA-G--A-TAGT-ATTGTAATT
gi|22 : ggataaatgtatgggactcaatcagagtaattaaaatgtctgaaaatgagtgaaaatgggtagcactggaagtattgtttacagaaatggacattttaatagtatgtgagttcgtttccatgtaacggaccatcaaacataacctacctgaaacaccaaatttactgaaaatgaccacctctcatcttA----TAGGTT-AAA-TG--A----TACTTA--A--T-TTA--T-----CA--AATAAT-GA-TCA-----TTTTTA---G--ATA---GA-TTTTC----AGGTTTGTTTCCA-T-GGTAA----CGATCCCCAAAgtttta
gi|21 : atG-AAA-TA--GATAGTATTGT--A--T-TTG--TTTTTTCA--GA-AAA-AG-GCA-----TTTTTTA--G--ATT---GG-TTTAT----GTGTTCATTTCCA-T-GGTAA---T-GACCATCAAAC-ATA---C-CTATC-CTGAAaacgcgcttgatgg
gi|16 : TAGTACCGGGTA--T-TCA--TTTTCATG--GA-AAA-GG-GCA-----TTTCT----A--ACATTTGG-TTCAT----GAGTTCATTTCCA-T-GGTAA----CAAACATCAAACTATA--AC-CTT-G-CTGG----------ATTCATTGAAATTGACCATGCATTTGTC--TAAAATGAAGTGTG---GGACT--AGTA-----------T-A--AGAGC-A
gi|4 : TCTGA-A--AA-AA---G-GCA-----TTTTTA---A--ATA---GG-TTAAT----GAGTTTG-TTCCA-T-GGTAA----CGACCATC-AAC-ACA--CC-CTA-------AAACATCAAAATTC-C--AAA------GC-C-----TG--TCAAA-AAAG-GTA---AATAT--A-CGACTGAC-----CCT--AGAAT-AA-T-CA-ATCAA-----ATCAA--A--------A-A-A-----CG-AGT--GAAA------T-TG--T-------TAGC-ATT-GAATTTAT-----TTGAG-T---ACAG-----CAAGTCTAT-T-AAAATA---ATT---T-GTGAGTTCGTTTCAAT--------GGTAAAC-GAT-ATCAAAT--ATGTCA-TT----GCCGAAGA---CGAAAAT--A-T---AT--T-C----------A----AA------A--------CTGTC--A--AA--A------G-AGGCATTTGG-A-ACTGACA-CCA----A-AAG-AA--TAAAA--AA-ATCT--AAAAATGA---GC----------GA----AATA--GGTAGAATTT----TCATTG--TTC----GC-AGAAAAA-AG-TA--CT--T-T----T------A-TA---TT-GACATCGTA--GATTCGTTTCCA-C-GGT--A--t
gi|5 : ACA--GA-AAA-GG-AGA-----TTTATT---AGAATA---GGATCACT----GAGTTCGTTTCAACT-GGTAA------------AGA--GTA--AT-TTT-G-CTGAGAACAT--TGATTCACTGAGATTGGCCAA-C-----TTTGTCTAATGGAACGT----GAGAT--ataataataaaataaaaaacttgctgaaaacgtttcctcaaaatctgtaaaaacgaagtgcaaccctctatcccccctttcccttgttcctgaaaatttgagaaaaaacacagttcgagtgtttaatagttttacacagcaaaaatattgagcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|3 : taatttaaagataatctaaaaattaagttgaattttatcttagcgatatcattcgttattttaaattaaaaacatcaaacaaA-AAT-GA-TCA-----TTTTAA---G--ATA---GG-TTTGC----AGGTTCGTTTCAAAT-GGTAAAGATCGACCA--AAA--ATA--GC-GTT-G-ATGGAGACAC------TCA---AAGTTCAACAC-C-----TG--TT---CAAAACG-----GAAGT--A-CAAGACTTGATAGTCA---GAGTCAG-T-AA-A--AA-----AA-----ATTC-C---A-A-AAA---TGCGTT--GAAAATGGGATA-G--TA-ATAA-TG-T-ATT-TGTTTTAT-----CTGAA-A---GGG------CA--TTT-T-TTAGATAG---GTT---A-GTGAGTTCGTTTCAAT--------GGT-AAC-GACCATCAACC--CCCCCC-CCCCCAAAAAAAAA---CCCC-ATC-A-A---AA--T-C----------A----AA------G-------TCTGTC--AGAAA-GG------G-AAATAT---G-GGACTGACCCTAG----A-AATTAATTTCAAATCAA-A------AAA---A---AC-----GAG-TGA----AATT--GATAGCATTG----AAT-------TT-A-T-------AG---------T--T-T----TG---AG----------------------GTTCTTTCCCA-T-GGT--AAAC-G-A-TCAACGAA-------A------C----A----ACATAGC--TTTG-----AGTGGAGACATC-A-AA--ATT-ATAA-----A----------AAC--C---TGCC--AAAACAGAAGCTATA--------GGCTGAATTCAGAGCAATTAA-------------------AAAA-A-ATTAC-AAT----AATT--G---AAATAGT---A--GTATTGTATTTG-TT----TT----A-TCT--GG---A-----AA--GGCAT-T----TT--TTTTTT---A--TG-GTTCGTGAGTTTGTTTCCAT-GGTA-ACG---G-CCATATAAA--T------AT----A-C---CCT-T--CCTAA---AAAC-A---CCATG-ATATT--C----------A--------A--AGC--C---TGTC-AAAG-GG---AA--GTTA---A-A-A-TTGGTA-TGTGAGAGT--AA-TT----TAA----AA-----A-AT----C----TG--A-AAA-----TAA-TT-----GGA-AA--TTAT----GTAGC-A-TATCTATT--------CGT--T--------TT-----AAAA-CAT-----------A-AA--A-A-G-A--AAGAGT--T--A-TTT----AG---ATAT--TGT-TCAGATAGAAGTTCGTTTCCGAGTGCGCC-A-CGATAG-C-GCAAT---A---GGCGCTATATTTCC-TTGCTGATGA-AC---AT-C-ATGAATT-CACTGAGATGGGCCA--C-----TGTC-TCAAA-C--G---AAC-CG--T--AGGATTGGAT---A-TAA---TA--GC--AAATTTT--T--A--A----AAA--A-GTC---A--A-ATAA----TTG---AAGT--A-ACA--T--G-A------TAGCA-------A--TATT-ATT--T---T--A-T---C--A-G-AC-G-G-----G----T-GGTT---T-TT-C-A-G-CTA-GTT---T----TAGT-----GAGTTCGTTATCCAT-G-GTA-A-C-GCATAATCAAA-TA-ATGTC-A-----TTGCCG-A-ACG----CG--A----AATT-G-TCATT---TAAAACCTTGTC--AAA-AGAG--C--T-AAG---G--GACTTGACACCAAAAGAAA-T-AA-A--ACA-AAAGAAATTCT-T-TAA----ACCAA-TCAGA-GCGG-A------A-TA--A-CA-----GA-------A-T-TT-TT----TTGTT-CT-G--CGAG---AAGA--G---TACTT--TT-T-AGGTTA----CA--C-GC-ACGGAAT-CGTTT-C-CCACGAAACA-ATAAT-AAtggaatgttagcgaattttattgaaaaagtcaaaaattgagtacctggatcgcatgaatattttattcagaaatgggtgatgtttcagctgttgttgtttttagagttgttttcatgcgtcaagataatgaaatctatgtcattgccaggacgacctgaatggtattcaaatgtaaagaagcattgagggatgacacagggaaataaatgaggcggagaactaaatatgtttatattttttgttttagcagtagaaaagtacttttttgatacctgtagggatcatttcatggtgatacatagataaataaaagaaccggttgcagaaaagcttcaataggaccattagtggatattcccgaaacctgatcaaaaacagaaagttgaaacacgcttacgacgcctccaaccttgtctttttttttttgcgcttgaatctaaagcaatgagaagagaaaaaaacatttcgggtgtttgttcatgttatacgcaggccaatattcgccgcgtaatcttgtgtatgaactcgttgcgtttattatctccagtgaacgaggagttatttcattcattcgggtttgtaggctgtctttctacacgcatcagacgaatatgaataacccatgtttcaccgaaattattttgcggtatttatcactgacatttaacagaagtaat
gi|6 : atatttcaagaTT---T--ATC---GG-TAAAT----GAGTTTGTTTCCA-T-GATAA---C-GACCATAAACC-ATT--CC-CTA-C-CTACAAACATCATAATTCACTGAAATTGAGCAC-C-----TC--TCAAACAAAGCATA---GGGTTC-A-CA-----------TC---AGAGT-AA-T--A-A--AA-----AT-----ATCT-T---AGA-A-----TG-ACT--GAAA------TAGGT-TA-A--A-TGAT-ACT-TAATTTAT-----CAGAA-A---ACGA----TTA--TTT-T-T-AGATAG---GTT---T-GCAGGTTCGTTTC--CAA------AGT-AAC-GATCTCCAAAC--GCGTGC-TT----GATGGAGA---C----ATCAA-A---AT--T-C----------A----AA------A-------CCTGTCA-A--AA-CG------G-ATGTGC---A-AGACTGAT--GTC----A-GAGT-AATTAAAA--AA-ATTT--AAAA---AT--AC-----T---TGA----AATA--GATAGTATTG----TATTTG--TTTT-A-TC-TGAAATA-GG-CATCTT--T-T----TT---AGA-TA-GGTT-AA-----TG--AGTTTGTTTCCA-T-AGTA-A--C-G-A--CATC--A-------A------A----CAA--CC----C--CCT------A----AAACATC-A-AA--ATCTA--------A----------AGC--C---TGTC--AAAAGGAAAA-TATG-----G--GACTGACCCTAGAATGATTAA----TCAAA--T-C-----AACA-A-A---CGAGT--GAAATT--G----AT-------A--GCATTGGCTTTA-TTTGAGT-----A-C----AG---T-----AA--G-----T----CT--TTATTT---AGATAAATTTGTGAGTTTGTTTCCAT-GGTG-ACG---A-CCATCA-AA--C------AT----ACC---C-T-T--CATGG---AAAC-A---TCATA-AT--T--C----------A--------A--AAT--C---TGTCTTAAC-AG---AA--GAAT---A-AGA-CTG--A-TGC-AAAGT--A--AT----TAA----AA-----T-AT----T----ATG-A-AAA-----TAC-TT-----AAA-AT--aa
gi|7 : T----GAGTTCGTTTCCA-T-GGTAA---A-GATAATTAAAT-ATG--GCATTG-C-C--GAAG-ACGA-AATGTATTCAAA------AC-C-----TG--TCAAA-AGAGCAT----GAGGG--A-C------------------GACT-GA-C-AC-C--AA-----A------ATCT-A---A-A-AA----TG-AGC--GAAA------TAGA--TA-A--AATTTT-ATT-TGTTTTAT-----CAACA-A---A-AG----TAC--TTT-T-T-----AG---GTTAGAT-GTAGGATCGTTTC--CACGAAAAAAAT-AATAAATAATAAAAT--A---AC-TT----GCTGAAAA---C----GT--C-A---TTCCT-C----------A----GA------A-------TCTGTC--A--AA-a
gi|17 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgAAAC-ATA--CC-CTA-C-CTGGAAATGACATAATCCACTGAAATTGA-----------------------AGTGT----GAGGTTCA-CA-----------T-A--AGAAT-AA-T-AA-A--AA-----AA-----AACT-T---T-ATA-----TG-TCT--GAAA-------AGGGTTA-A--A-AGAT-ACC-TAATTTAT-----AAAAAGA---ATAA----G-A--TT------AGAAAG---GTT---C-ACGGGTTCGTTTC--C--------a
gi|8 : GACCA------------TCAAACATAACCTACCTGAAAC--A-C-------------CA--AATTT-AC-T-GA-A--AATGACCACCTCTCATCT-T---A-A-A-----TG-ACTTGAAAA------TAGT--TA-A--A-T--T-ACT-TAATTTAT-----CAGAA-A---AGGA----TTA--TTT-----AGATAG-----T---T-GCAGGTTCGTTCC--A--------TGT-AAC-GATCACCAAAA--ACGCGC-TT----GATGGAGA---C----ATCAA-G---AT--T-C----------A----AA------A-------CTTGTC--A--AAGCG------G-AAGTTC---A-AGACTGAT--GTC----A-GAGT-AATTAATA--AA-ATGT--AAAA---AT--AC-----C---TGA----AATA--GATAGTATTG----TAATTG--TTTT-A-a
gi|2 : ggataaatgtatgggactcaatcagagtaattaaaatgtctgaaaatgagtgaaaatgggtagcactggaagtattgtttacagaaatggacattttaatagtatgtgagttcgtttccatgtaacgA-----------TCA---GAGT-AA-T-TA-A--AA-----TT-----TTCT-A---A-A-AA----TG-AGT--GAAAA-----TGGG--TA-G--ACTGG--ATT-TGTTTTGA-----CAGAA-ATGGACA------TA--TTT-T-T-ATA--G---GTT---C-GTGAGTTCGTTTC--CAT------GGT-AAC-AACCCATAAAC--ATCCTC-CC------TGGAAA---C----AC--A-ATA-AT--T-C----------ACTG-AA------ATTGACCTCCTCTC--A--AA-CAAAGCGTG-GGGTTC---A-C-ATCAGT------------AGTAA--TAAAA--TATATCT--TAAA---ATG-AC-----T----AA----AATA--GGTT--AATG----TA----------------------------A--TT--T-T----TT---AGA-TA-GGTT--------TGC-AGGTTGTTTCCA-T-GGT--AA-C-G-ATCCA-C--A-------A------AAA--C----GC----G--CTTG-----ATGG-GGACATC-A-AA--TTT-A--------ATAAAAAAAAAAAC--C----GTC--AAATCGAAGA--ACA-----A--GACTGATGTCAGAGTAATTAA----AA-AT--T-C-----TAAA-A-A---T-ACTTAA-AATA--G----AT-------A--GTATGGTATTTG-TT----T-------T----AT---TCTGAAAA--G-----G----CA--TTTTTA---AAATAGGTTAATGAGTTTGTTTCCAT-GGTA--CGAACG-CCA----AA--C------AT----AAC---C-T-T--GCTGG---AGAC-A---TCATA-AT--T--T----------ACTGAG---ATTGGC--CACATGTCTAAAC-GG---AACCGTA----G-G-A-TTGATA-TA--ATAGC--AATTT----TAA----AA-----A-GT----A--------A-AAA-----TGA-T-------AACAT--GGATA---G---C-A-TAAT-ATT--------TAT--T--------TT-----AT---CA--------------AA--A-A-G-G--G----T--GA-T-TTT----CA---GC-TA-GTT-TTG--TG--AGCTCGTTTCC-AT---GT--A---G--A-C-GA--T---AATCAAT---ATGT--CA-TTGCCG--AAGACGAAAT---GTAT--T-CA---AAA----CC---------TGTC-A--AA------G-AGCATG--A--GGGACTG-AC---ACCAA---AA--GA--A--------A--A--A----AAA--T-CTG---A--A-A-AT----T-----GAG-----GCG--A--A-A------TAG-A-T----AG--AATTTATTTGT---T--T-T---AGCG-A-AA-A-G-----A----T-AC-T---T-TT-T-A-----A-GTTA--C----ATGT-----AGGATCGTT-TCCAC-G---A-A-C-A-ATAAAAAAA-A--A----AAAC---TTGCTG-A-A-A----CG----------TCG-T-TCCT--CAAAACC-TGTC-AAAA-AAA
gi|13 : ggatgtatgggacttca-----------TCC--AGAGT-A--T-AA-A--AT------T-----GTCT-CTGAA-A-A-----TG-AGT--GAAA------T--G--TC-G--G-TAGC-ACT-GGATTTTTTTTGACAGAA-A---TGGA----ACA--TTT-T-T-TGAT-G---GTG---C-GTGAGTTCGTTCC--ATA------GGT-AAC-GACCATCAAAC--ATACCC-Tgtgcaaccctctaagtcccccccaccccctgtgcctgaaaatttgagaaaaaacaagttcggatttttaaatagttatacgcagcaaaaaatattgagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcctactcagacggatatgaataacccctcgttcaacagaaattatactttgcggtattatcacatgaatatttctacagaataataaatactgtacagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagtctcagacatttttctctgtcacatacatgtgtaataaaaacaaatccaaca
gi|7 : ttattggactcagcac--AGAGT-AA-T-TA-A--AA-----AT------TCTAA---A-A-A-----TG-ATT--CAAA------TATA--TA-G--A-ACATCATT-CGTTTTAA-----CATAA-A---A-AA----GGA--TTC-T-T-TTAAAGATAGTT---TAATGGGTTCGCTTC--CAT------GGT-AAC-GAACGCCAAACATATACCC-TT----GCTGGAGAGATC----AT----A---AT--T-C----------A----actctggaaacaccataattcactgaaattgaccaccttctcaaaaagccgggggtcacatcagcagattaataa
gi|18 : ttggtgtg--AGAGT-AA-TTAA-A--AA-----AT------TCT-A---A-A-AAAAAATA-ATT--GAAA------TATA--TAGA--A-TAGC-ATT-CGTTTCAA-----CGGAA-A---A-AGGATTTTT--TTT-T-T-AGATAA---GTT---C-GTGAGTTCGTTTC--CAT------GGT-AActgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgtgagttcgtttccatggtaaagataattaaatatggcattgccgaagacgaaatgtattcaaaacctgtcaaaagagcatgagggacgactgacaccaaaatctaaaaatgagcgaaatagataaaattttatttgttttatcaacaaaagtactttttaggttagatgtaggatcgtttccacgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|15 : cA-A--AA-----AT------TCT-A---A-A-AA----TG-AGA--GAAA------TAAA--TA-GC-A-TTGT-ATT-CATTTTAA-----CGGAA-T---TTG------CA--TTT-TGT-AGGTAG---ATT---C-GTGAGTTCGTTCC--CAT------GTT-AAC-GAAAATCAAAC--ATACCC-TT----CCTGGAGA---C----AT--G-G---AT--T-C----------
gi|21 : aaggatgcgtgaggctgacaataaagttactgtagttc--GAAA------TAGA--TA-GT-A-TTGT-ATT-TGTTTTTT-----CAGAA-A---A-AG----GCAT-TTT-T-T-AGATTG---GTT---T-ATGTGTTCATTTC--CAT------GGT-AAT-GACCATCAAAC--Atctgaaatt
gi|22 : --TA-A--A-TGAT-ACT-TAATTTAT-----CAAAT-A---ATGA----TCA--TTT-T-T-AGATAG---ATT---T-TCAGGTTTGTTTC--CAT------GGT-AAC-GATCCCCAAAA--ACGCGC-TT----GATGGtacctatcctgaa
gi|4 : atataggtT-----CTGAA-A---AAAG----GCA--TTT-T-T-AAATAG---GTT---A-ATGAGTTTGTTCCA-T--------GGT-AAC-GACCATC-AAC--ACACCC-T---------AAAA---C----ATCAA-A---AT--TCC----------A----AA------G-------CCTGTCAAA--AA-AG------GTAAATAT---ACG-ACTGAC--CCT----A-GAAT-AATCAATC--AA-ATC---AAAA---A---ACGA---G---TGA----AATT--GTTAGCATTG----AA-------TTT-A-TT-TGAGTAC-AG-CAAGTC--TAT----TA---AAA-TA-ATTT-G------TG--AGTTCGTTTCAA-T-GGTAAA--C-G-A--TATC--A-------AATATGTC----A----TT----G--CCGAAGACGA----AAATAT-----A--TTC-A--------A----------AA---C---TGTC--AAAAGAGGCA-TTTG-----G--AACTGACACCAAAAGAATAAA----AA-AA--T-C-----TAAA-A-A---TGAGC--G-AAATAGG---TAG-------A--ATTTTCA--TTG-TT----C-----G-C----AGAAAA-----AA--G-----TAC--TT--TTATAT---TGACA---TCGTAGATTCGTTTCCAC-GGTA-ATA---A-TAATA--AA---------ATAAAAA-A---C-T-T--GCTGA---AAAC-GTTTCC--------T--C----------A--------A--AAT--C---TGTA-AAAA-CG---AA--GTGC---A-A-
gi|7 : AG---TTT---T-GTGAGTTCGTTTC--CAT------GGT-AAA-GATAATTAAAT--ATG-GCATT----GCCGAAGA---C----GA--A-ATGTAT--T-C----------A----AA------A-------CCTGTC--A--AA-AG---------AGCA----------TGAG---GG----ACGACTGA--CACCA--AA-ATCT--AAAA---ATGAGC----------GA----AATA--GATAAAATTT----TATTTG--TTTT-A-TC--AACAAA-AG-TA--CT--T-T----T--------TA-GGTTAGA-----TGTAGGATCGTTTCCA-C-Gccctctatcccccctttcccttgttcctgaaaatttgagaaaaaacacagttcgagtgtttaatagttttacacagcaaaaatattgagcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|6 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctGTTTGTTTC--CAT------GAT-AAC-GACCATAAACC--ATTCCC-TA----CCTACAAA---C----ATC-ATA---AT--T-C----------ACTGAAATTGAGCA-------CCTCTC--A--AA-CA--------AAGCAT---A-G----GGT--TCACATCA-GAGTAA--TAAAA--AT-ATCT--TAGA---ATG-AC-----T----GA----AATA--GGTTAAATGA----TACTTA--ATTT-A-TC-AGAAAAC-G---A--TTATT-T----TT---AGA-TA-GGTT-TG-----CA--GGTTCGTTTCCA-A-AGTA-A--C-G-A-TCTCC--A-------A------A----C----GCGT--G--CTTG-----ATGG-AGACATCAA-AA--TTC-A--------A----------AAC--C---TGTC--AAAACGG--A-TGTG-----CAAGACTGATGTCAGAGTAATTAA----AA-AAATT-T-----AAAA-ATA---C--TT--G-AAAT--A---GAT-------A--GTATTGTATTTGTTT----T-----A-TCTGAAA---T-----AG--GCA---T----CT--TT-TTT---AGATAGGTTAATGAGTTTGTTTCCAT-AGTA-ACG---A--CATC--AA---------AC----A-A---C-C-C--CCT-A---AAAC-A---TCAAA-AT--C--T----------A--------A--AGC--C---TGTC-AAAA-GG---AA---------A-A-------TA-TG--GGACT--GACCC----TAG----AATGATTA-ATCAAAT----CA--ACAAA-----CGA-GT-----GAA-AT-----T----G-----A-TAGC-ATT--------GGC--T--------TTATTTGAG---TAC-----------A-GT--A-A-G-T--C----T--T--TATTT----AG-----ATA-AAT-TTG--TG--AGTTTGTTTCC-A-TG-GTG-A-CGA--C-C-AT--C---A---AAC---ATAC--CC-TTCATG--GAAAC---AT-C-ATAA--T----TCAAA------A--TC----TGTCTT--AA-C--A-G-AAG-AA--T--AAGACTG-AT---G-CAA----A--GT--A----AT--T-----A----AAA--T-ATT---ATGA-A-AA----T-----aaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|9 : tttatcggtaaatga--T-C----------A----AA------A-------CCTGTC--A--AA-GC------G-AAGTGC---A-A-acttaaaata
gi|24 : ctgaaaacgccattccG------G-ATGTATG--A-A-ACTGAC--ATC----A-GAGT-AATTAAAA--AA-TTCT--GAAA---A----------TGAGTGA----AATG--GATAGCACTG----AATTTATTTTTT-A-AC-AGAAATT-GA-CA--TT--T-T----ccctctaacacttgccccgtatgcctgaaaatttcagaaaaaatacagtccgggtgtttaatagctatacgcaggaaaaatattgagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcaccctatagctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcatggaatatttctacataaataataagtactgtacaggactgtctgtaaaaacaatatggctttgatgaaacataaaga
gi|20 : a---A-G-ACTGAT--TTC----A-AAGTAA--TAAAA--AT-ATCTTGAAAA---T---AC-----T---GGA----AATA--TATAGTATTG----TATTTG--TTTT-A-TA-TGAAAA------------------------------A-GGTT-AA-----TG--AGTTCGTTTCCA-T-GGT--
gi|7 : acaataG----A-GAGTAA-TTAAAA--AT--TCT--AAAA---ATG-A------T---TCA----AATA--TATAGAACAT----CATTCG--TTTT-A-ACATAAAAAA-GG--A--TT--C-T----TTTAAAGA-TA-GTTT-AA-----TG--GGTTCGCTTCCA-T-GGTA-A--C-G-A-ACGCC--AAACATATA------C----C----CT----T--GCTG-----G----AGAGATC-ATAA--TTC-A--------
gi|8 : ttggtgt----A-GAGTAA-TTAAAA--TG--TCT--GAAA---ATG-AG-----T---GAA----AATG--GGTAGCACTGGAAGTATT-G--TTT--A--C-AGAAATG-GA-CA--TT--T-T----------AA-TA-GTAT-G------TG--AGTTCGTTTCCA-T-GTA--A--C-GGA-CCATC--A-------A------A----CATAACC----TA-CCTG-----A----AA-CACC-A-AA--TTT-A------------------------C---TG----AAAA----------------T--GACCACCTCTC--ATC-TTAA----AT-GA--C-T-----TGAA-A-A---T-AGT--------------TAA-------A--TTACTTAATTTA-T-------------C----AG---A-----AA--A-----G----GA--TTATTT---AGATAG--TTGCAGGTTCGTT-CCAT-G-TA-ACG---A-TCACC--AA--A------A-----A-CGCGC-T-T--GATGG---AGAC-A---TCAAG-AT--T--C----------A--------A--AAC--T---TGTC-AAAGCGG---AA--GTTC---A-AGA-CTGATG-TC--AGAGT--A--AT----TAAT---AA-----A-AT----G----TA--A-AAA-----TAC-CT-----GAA-AT--AGATA---G---T-ATTGTA-ATT---------GT--T--------TT-----Actgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgtgagttcgtttccatggtaaagataattaaatatggcattgccgaagacgaaatgtattcaaaacctgtcaaaagagcatgagggacgactgacaccaaaatctaaaaatgagcgaaatagataaaattttatttgttttatcaacaaaagtactttttaggttagatgtaggatcgtttccacgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|18 : ggataaatgtatgggactcaatc----A-GAGTAA-TTAAAA--AA-TTCT--AAAA---A---AAAATAAT---TGA----AATA--TATAGAATAG----CATTCG--TTTC-A-AC-GGAAAAA-GG--A--TT--T-TTTTTTT---AGA-TA-AGTT-CG-----TG--AGTTCGTTTCCA-T-GGT--A--
gi|15 : cAGTTCAAA--AA-TTCT--AAAA---A--------------TGAGAGAAATA--AATAGCATTG----TATTCA--TTTT-A-AC--GGAATT-TG-CA--TT--T-T----GT---AGG-TA-GATT-CG-----TG--AGTTCGTTCCCA-T-GTTA-A--C-G-A-AAATC--AAACAT--A------C----C----CT----T--CCTG-----G----AGACATa
gi|13 : aaggatgcgtgaggctgacaataaagttactgtTCT--GAAA---A----------TGAGTGA----AATGTCGGTAGCACTG----GATTTT--TTTT-G-AC-AGAAATG-GAACA--TT--T-T----TT----GA-T--GGTG-CG-----TG--AGTTCGTT-CCA-TAGGT--AA-C-G-A-CCATC--AAACAT--A------C----C----CTA---C--TCTG-----G----AAACACC-ATAA--TTC-A--------ggattctctgaaatt
gi|21 : ttattggactcagcactccagagtataaaattgtcGA----AATA--GATAGTATTG----TATTTG--TTTT-T-TC-AGAAAAA-GG-CA--TT--T-T----TT---AGA-TT-GGTT-TA-----TG--TGTTCATTTCCA-T-GGTA-A--T-G-A-CCATC--A-------A------ctgaaattgaccaccttctcaaaaagccgggggtcacatcagcagattaataa
gi|22 : ATA--GGTTAAATGA----TACTTA--ATTT-A-TC-AAATAAT-GATCA--TT--T-T-----T---AGA-TA-GATT-TT-----CA--GGTTTGTTTCCA-T-GGT--A------A-CGAT----------------------------------C--CCCA-----A----AAACacatacctatcctgaa
gi|16 : atG----TATTCA--TTTTCA-TG--GAAAAG-GG-CA--TT--T-C----TA---ACA-TTTGGTT-CA-----TG--AGTTCATTTCCA-T-GGTA-A--C-A-A-ACATC--A-------A------gcgcttgatgg
gi|4 : tagtaccgg-TC-TGAAAAAAGG-CA--TT--T-T----T----AAA-TA-GGTT-AA-----TG--AGTTTGTT-CCA-T-GGT--AA-C-G-A-CCATC--A-------A------C----A----CA----C--CCT------A----AAACATC-A-AAATTCC-A--------A----------AGC--C---TGTCAAAAAAGGTAAA-TATA-----C--GACTGACCCTAGAATAATCAA----TCAAA--T-C-----AAAA-A-A---CGAGT--GAAATT--G---T-T-------A--GCATTGAATTTA-TTTGAGT-----A-C----AG---C-----AA--G-----T----C----TATTA---AAATAA-TTTGTGAGTTCGTTTCAAT-GGTA-AAC---G-ATATCA-AA--T------AT----G-T---CAT-T--GCCGA---AGACGA---AAATATAT--T--C----------A--------A--AA---C---TGTC--AAA-AG---AG--GCATTTGG-A-A-CTGACACCA--AAAGA--A--------TAA----AA-----A-AA----T----CTA-A-AAA-----TGA-GC-----GAA-A----TAG----G---T-A-GAAT-TTT--------CAT--TG-------TT-----CG---CAG-----------A-AA--A-A-A-GT-A----C--T--T-TT----------ATATT-GACATCG--TA--GATTCGTTTCC-A-CG-GT--A-actataaccttgctggattcattgaaattgaccatgcatttgtctaaaatgaagtgtgggactagtataagagcat
gi|5 : GAAAAG-GA-GA--TT--T-A----TT---AGAATA-GGAT-CAC----TG--AGTTCGTTTCAACT-GGT--A--ataataataaaataaaaaacttgctgaaaacgtttcctcaaaatctgtaaaaacgaagtgcaaccctctatcccccctttcccttgttcctgaaaatttgagaaaaaacacagttcgagtgtttaatagttttacacagcaaaaatattgagcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|17 : taatttaaagataatctaaaaattaagttgaattttatcttagcgatatcattcgttattttaaattaaaaacatcaaacaaaca----TT---AGA-AA-GGTT-CA-----CG--GGTTCGTTTCCA-aagagtaattttgctgagaacattgattcactgagattggccaactttgtctaatggaacgtgagattggaatgttagcgaattttattgaaaaagtcaaaaattgagtacctggatcgcatgaatattttattcagaaatgggtgatgtttcagctgttgttgtttttagagttgttttcatgcgtcaagataatgaaatctatgtcattgccaggacgacctgaatggtattcaaatgtaaagaagcattgagggatgacacagggaaataaatgaggcggagaactaaatatgtttatattttttgttttagcagtagaaaagtacttttttgatacctgtagggatcatttcatggtgatacatagataaataaaagaaccggttgcagaaaagcttcaataggaccattagtggatattcccgaaacctgatcaaaaacagaaagttgaaacacgcttacgacgcctccaaccttgtctttttttttttgcgcttgaatctaaagcaatgagaagagaaaaaaacatttcgggtgtttgttcatgttatacgcaggccaatattcgccgcgtaatcttgtgtatgaactcgttgcgtttattatctccagtgaacgaggagttatttcattcattcgggtttgtaggctgtctttctacacgcatcagacgaatatgaataacccatgtttcaccgaaattattttgcggtatttatcactgacatttaacagaagtaat
gi|7 : aaacataccctacctggaaatgacataatccactgaaattgaagtgtgaggttcacataagaataataaaaaaaaactttatatgtctgaaaagggttaaaagatacctaatttataaaaagaataaga---AGC-TA-GTTT-TG-----TG--AGTTCGTTTCCA-T-GGT--A--AAG-A-TAATT--A-------AATATGGC----A----TT----G--CCGA-----AGACGAAATGT-----A--TTC-A--------A----------AAC--C---TGTC--AAAAGAG----CATGAGGGAC--GACTGAC---------ACCAA-------AA--T-C-----TAAA-A-A---TGAGC--G-AAATAGA---TAA-------A----ATTTTATTTG-TT----TTATCAA-C----AA---------AA--G-----TA---CT--T--TTT---AGGTTAG-ATGTAGGATCGTTTCCAC-GAAA-AAA---A-TAATA--AA--TAATAAAAT----A-A---C-T-T--GCTGA---AAAC-G---TCATT-CC--T--C----------A--------G--AAT--C---TGTC-AAAA-
gi|6 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-TC-GGTA-AA-----TG--AGTTTGTTTCCA-T-GAT--AA-C-G-A-CCATA--A-------A------C----CATT-CC----CTACCTA-----C----AAACATC-ATAA--TTC-ACTGAAATTG----------AGCACC---TCTC--AAACA--AAG-CATA-----G--GGTTCACATCAGAGTAATAAAAATATC-----T-T-----AGAATG-A---C---T--G-AAAT--AGGTTAA-------ATGATACTTAATTTA-T-------------C----AG---A-----AA--A-----C----GA--TTATTTTT-AGATAGGTTTGCAGGTTCGTTTCCAA-AGTA-ACG---A-TCTCC--AA---------AC----G-C---G-T-G--CTTGATGGAGAC-A---TCAAA-AT--T--C----------A--------A--AAC--C---TGTC-AAAA-CG---GAT-GTGC---A-AGA-CTGATG-TC--AGAGT--A--AT----TAA----AA-----A-AA----T----TT--A-AAAA----TAC-TT-----GAA-AT--AGATA---G---T-A-TTGT-ATT--------TGT--T--------TT-----AT---C-T-----------G-AA--ATA-G-GC-A----T--C--T-TTT----TT---AGATA-GGT-TAA--TG--AGTTTGTTTCC-AT-A-GT--AACGA----C-AT--C---A---AAC---A-AC--CC-C--CTA--AA-AC---AT-C-AAAA--T-C--TAAA----GCC---------TGTC-A--AA-A--G-G-AAAATA--T--GGGACTG-ACCCTA-GAA---TG------A----TTAAT--C--A----AA------TC---A--ACA-AA----C-----GAGT--G-AAA--TT-G-A------TAGCA-T----TG--GCTTTATT--TGAGT--A-C---A--G-T-AA-G-----------------T---C-TT-T-A-T-TTA-GATAAAT----TTGT-----GAGTTTGTT-TCCAT-G-GTG-A-C-G-ACCATCAAA-C--ATACCCT-----TCATGG-A-A-A----CA--T----CA-T-A---ATT---CAAAATC-TGTCTTAAC-AGAA-------GAA---TAAGAC-TGATGC--AAAGTAATT-AA-A--A-T-A---------T-TATGA----A--AA-T--
gi|26 : tttA-----G----AAATAT-----A--TTC-A--------A----------AAC--C---TGTC--AAAAGAG-CA-TTTG-----T--GACTGACACCAAAAGAATAAA----AA-AA--T-C-----TAAA-acttaaaata
gi|24 : gaGGATG-TATG-----A--AACTGACATCAGAGTAATTAA----AA-AA--TTC-----TGAA-A-A---TGAGT--G-AAAT--G---GAT-------A--GCACTGAATTTA-TT----T-----
gi|18 : aGAGTAATTAA----AA-AA--T-TCTAAAAAAA-A-A---T-AATT-G-AAAT--A---TAT-------A--GAATAGCATTCG-TT----TCA---A-C----GG---A-----AA--AAGGATT----TT--TTTTTT---AGATAAGTTCGTGAGTTCGTTTCCAT-GGTA-Atttaacagaaattgacatttt
gi|15 : ca--T-C-----TAAA-A-A---TGAGA--G-AAAT--A---AAT-------A--GCATTGTATTCA-TT----TTA---A-C----GG----------A--A-----T----TT--GCATTTTGTAGGTAGATTCGTGAGTTCGTTCCCAT-GTTA-ACG---A-AAATCA-AA--C------AT----ACC---C-T-T--CCTGG---AGAC-A---
gi|13 : aaggatgcgtgaggctgacaataaagttactgtagttcaaaaatAA-A-A---TGAGT--G-AAAT--G---TCGGT-----A--GCACTGGATTTT-TT----TTG---A-C----AG---------AA--A-----TGGAACA--TTTTTT---GA-TG-GTGCGTGAGTTCG-TTCCATAGGTA-ACG---A-CCATCA-AA--C------AT----A-C---C-C-TACTCTGG---AAAC-A---CCATA-AT--T--C----------A--------tggattctctgaaatt
gi|21 : ttattggactcagcactccagagtataaaattgtctctg-------A--GTATTGTATTTG-TT----TTTTC-A-G----AA---A-----AA--G-----G----CA--TTTTTT---AGATTGGTTTATGTGTTCATTTCCAT-GGTA-ATG---A-CCATCA-AA--C------AT----A-C---C-TAT--CCTGA---Actgaaattgaccaccttctcaaaaagccgggggtcacatcagcagattaataa
gi|22 : gaaatagatAATTTA-TC----------A------AA---T-----AATGA-----T----CA--TT-TTT---AGATAGATTTTCAGGTTTGTTTCCAT-GGTA-ACG---A-TCCCC--AA--
gi|2 : atataggttaaatgatacttG---T-----AA--------------T--TT-TTT---AGATAGGTTTGC-AGGTTGTTTCCAT-GGTA-ACG---ATCCACA--AA--A------AC----G-CG--C-T-T--GATGG---GGAC-A---TCA-A-AT--T--TAATAAAAAAAA--------A--AAC--C----GTC-AAAT-CG---AA--GAAC---A-AGA-CTGATG-TC--AGAGT--A--AT----T-A----AA-----A-AT----T----CTA-A-AAA-----TAC-TT-----AAA-AT--AGATA---G---T-A-TGGT-ATT--------TGT--T--------TT-----AT---TCT-----------G-AA--A-A-G-G--C----A--T--T-TTT----AA---A-ATA-GGT-TAA--TG--AGTTTGTTTCC-A-TG-GT--A-CGA--A-C-GC--C---A---AAC---ATAA--CC-TTGCTG--GAGAC---AT-C-ATAAT-T-TACTGAGATTGGCCA--CA----TGTC-TA-AA-C--G-G-AAC-CG--T--AGGATTG-AT---A-TAA---TA--GCA-A----TT--T--T--A----AAA--A-GT----A--A-A-AA----T-----GA-T--A-ACAT-G--G-A------TAGCA-T----AA--TATTTATT--T---T--A-TC--A--A-A-AA-G-G-----G----T-GA-T---T-TT-C-A-G-CTA-G-T---T----TTGT-----GAGCTCGTT-TCCAT---GTAGA-C-G-ATAATC-AA-T--ATGTC-A-----TTGCCGAA-G-A----CG--A----AA-T-G-T-ATT---CAAAACC-TGTC-AAAG-AGCA------TGAG---G--GAC-TGACACCAAAAG-AA---AA-A--A-A-A---------T-C-TGA----A--AATT--GAGGC-GAA------A-TA-GA-TA-----GA-------A-T-TTA-T----TTGTT-TTAG--C-GA---AAAG--A---TACTT--TT-TAA-GTTA----CA--T-GT-A-GGA-T-CGTTT-C--CA-CGAACA-ATAA-----AAAAAAAAA----ACTTGCTG--AA-ACG-----TC-----------------GTTCCTCAAA-A---CCTG--------TCAAAAA----AAGT-G-CAACCCTCTAAGTC-C--------------CCCCCACC-CCCTGT--------------G--CCTGAA--------AATTTGAGAAAAAA----CA-AGTTCGGATTTTTAA---ATAG-TTATACGCA-G--CAAAAAATATTGAGaaacgcgcttgatgg
gi|4 : ggatgtatgggacttcaatcagagtaattaaaattttctaaaaatgagtgaaaatgggtagactggatttgttttgacagaaatggacatatttttataggttcgtgagttcgtttccatggtaacaacccataaacatcctccctggaaacacaataattcactgaaattgacctcctctcaaacaaagcgtggggttcacatcagtagtaataaaatatatcttaaaatgactaaaataggttaatTTT---AAATAGGTTAATGAGTTTGTT-CCAT-GGTA-ACG---A-CCATC--AA--C------AC----A-C---C-C-T------A---AAAC-A---TCAAA-AT--TC-C----------A--------A--AGC--C---TGTC-AAAA-AAGGTAA--ATAT---ACG-A-CTGACC-CT--AGAATA-A--TC----AAT----CA-----A-AT----C----AA--A-AAA-----CGA-GT-----GAA-ATTGTTA-----G---C-A-TTGA-ATT--------TAT--T--------TG-----AG---TAC-----------A-GC--A-A-G---------T--C--T-ATT----AA---A-ATA--AT-TTG--TG--AGTTCGTTTCA-A-TG-GT--A---A--A-C-GA--TATCA---AAT---ATGT--CA-TTGCCG--AAGAC---G----AAAA--T------ATATT---CA--AAAC--TGTC----AA-A--A-G-AGG-CATTT--GGAACTG-AC---ACCAA---AA--GA--A----TA--A--A--A----AAA--T-CT----A--A-A-AA----T-----GAGCGAA-ATA--G--G--------TAG--------AA--TTTTCATTG-T---T--CGC---A--GAA-AA-A-A-----G----T-A--C---T-TT-T-A----TA---T---TGACATCGT-----AGATTCGTT-TCCAC-G-GTA-A-T-A-ATAATAAAA-T--AAAAAAC-----TTGCTG-A------------A----AA-C-G-T--TTCCTCAAAATC-TGTA-AAAA-CGAA--G--Tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcctactcagacggatatgaataacccctcgttcaacagaaattatactttgcggtattatcacatgaatatttctacagaataataaatactgtacagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagtctcagacatttttctctgtcacatacatgtgtaataaaaacaaatccaaca
gi|16 : tctgaaaaaaggcattGTTCATGAGTTCATTTCCAT-GGTA-ACA---A-ACATC--AAACT------ATA---A-C---C-T-T--GCTGG---ATTC-A---TTGAA-AT--TGAC----------C--------A--TGCATT---TGTCTAAAA-TG---AA--GTGTG--G-G-A-CTAGTA-TA--AGAGC--A--Tgcaaccctctatcccccctttcccttgttcctgaaaatttgagaaaaaacacagttcgagtgtttaatagttttacacagcaaaaatattgagcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|7 : tagtaccgggtattcattttcatggaaaagggcatttctaacatttgTTTGTGAGTTCGTTTCCAT-GGTA-AAG---A-TAATTA-AA--T------ATG---G-C---A-T-T--GCCGA---AGAC-G---AAATGTAT--T--C----------A--------A--AAC--C---TGTC-AAAA------GA--GCAT---G-A-----------G--GGACG--A---C----TGACACCAA-----A-AT----C----TA--A-AAA-----TGA-GC-----GAA-AT--AGATA---A---A-A-TTTT-ATT--------TGT--T--------TT-----AT---CAA-----------C-AA--A-A-G-T--A----C--T--T-TTT----AG---GT-TA-GAT---G--TA--GGATCGTTTCC-A
gi|6 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagtTGAGTTTGTTTCCAT-GATA-ACG---A-CCATA--AA--CC-----AT----T-C---C-C-TA-CCTAC---AAAC-A---TCATA-AT--T--C----------ACTGAAATTG--AGCACC---TCTC-AAAC-A----AA--GCAT---A-G-GGTTCACA-TC--AGAGT--A---A----TAA----AA-----ATAT----C----TT--A-GAA-----TGA-CT-----GAA-AT----AG----G---TTA-AATG-ATA--------CTTAAT--------TT-----AT---CA------------G-AA--A-A-C-G--A----T--TATT-TTT----AG---A--TA-GGT-TTG--CA--GGTTCGTTTCC-AA-A-GT--AACGA--T-C-TC--C---A---AAC---GCGT--GC-TTGATG--GAGAC---AT-C-AAAA--TTCA---AAA----CC---------TGTC-A--AAAC--G-G-ATG-TG--C--AAGACTG-AT---G-TCA---GA--GT--A----AT--T--A--A----AAAAAT--TT---A--A-A-AA----TACTT-GA----A-ATA--G----A------TAGTA-T----TG--TATTTGTT--T---TATC-T---G--A-A-AT-A-G-----G----C-A--TCTTT-TT-T-A-G-ATA-GGT---T----A-AT-----GAGTTTGTT-TCCAT-A-GTA-A-C-G-AC-ATCAAA--------CAA-----CCCCCT-A-A-AACATCA--A----AA-T-C-T--------AAAGCC-TGTC-AAAA-GGAA--A--ATATG---G--GAC-TGACCCTAGAAT-GA-T-TA-ATCA-A-A---------T-C-AAC----A--AA-C--GA-GT-G-A------A-ATTGA-TA-----GC-------A-T-TGGCT----TTATT-TGAGTAC-AG---TAAG-------TCTTTATT-T-A-GATA----AATTT-GTGA-GT--T-TGTTTCC-ATG-GTGAC----GAC-CATCAAACATAC----CCTTCATGG-AA-ACA-----TC-----------------AT---------A---AT----------TCAAAAcgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|9 : tttatcggtaaaCTGA---AAAC-G---CCATT-CC--T--C----------A--------A--AAC--C---TGTC-AAAG-CG---AA--GTGC---A-A-tctgtcttaacagaagaataagactgatgcaaagtaattaaaatattatgaaaatacttaaaata
gi|8 : AT---A-A-A-T--GTA-TG--GGACTCAA--TCAGAGTAATT--AA-----A-ATG---T----CTG-A-AAA-----TGA-GT-----GAA-A-----AT----G---G-G-TAGC-ACTGGAAGTATTGT--T--------T------------AC-----------A-GA--A-ATG-G--A----C--A--T-TTT----AA------TA-G-T-ATG--TG--AGTTCGTTTCC-AT---GTA-A-CGG--ACC-AT--C---A---AAC---ATAA--CC--TACCT--GAAAC---AC-C-AAAT--T-TACTGAAAATGACCA--ccctctaacacttgccccgtatgcctgaaaatttcagaaaaaatacagtccgggtgtttaatagctatacgcaggaaaaatattgagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcaccctatagctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcatggaatatttctacataaataataagtactgtacaggactgtctgtaaaaacaatatggctttgatgaaacataaaga
gi|7 : gg-TTGGTG-TG--AGAGT--A--AT----TAA----AA-----A--T----T----CT--A-AAAA----TGA-TT-----CAA-AT--ATATA---G---A-A-CATC-ATT--------CGT--T--------TT-----AA---CAT-----------A-AA--A-AAG-G--A----T--TC-T-TTT----AA---AGATA-GTT-TAA--TG--GGTTCGCTTCC-AT-G-GT--AACGA--A-C-GC--C---A---AACAT-ATAC--CC-TTGCTG--GAGAG---AT-C-ATAAT-T-CACTGAGATTGGCCcctctcatcttaaatgacttgaaaatagttaaattacttaatttatcagaaaaggattatttagatagttgcaggttcgttccatgtaacgatcaccaaaaacgcgcttgatggagacatcaagattcaaaacttgtcaaagcggaagttcaagactgatgtcagagtaattaataaaatgtaaaaatacctgaaatagatagtattgtaattgtttta
gi|13 : GAGT--A--T------------AA-----A-AT----TGTCTCTG-A-AAA-----TGA-GT-----GAA-ATGTCGGTA---G---C-A-CTGG-ATT--------TTT--T--------TT-----GA---CAG-----------A-AATGG-A-A-C--A----T--T--T-TTT----GA------T--GGT-GCG--TG--AGTTCG-TTCC-ATAG-GTA-A-CGA--C-C-AT--C---A---AAC---ATAC--CCTACTCTG--GAAAC---AC-C-ATAAT-T-CACTGAAATTGACCA--cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgtgagttcgtttccatggtaaagataattaaatatggcattgccgaagacgaaatgtattcaaaacctgtcaaaagagcatgagggacgactgacaccaaaatctaaaaatgagcgaaatagataaaattttatttgttttatcaacaaaagtactttttaggttagatgtaggatcgtttccacgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|18 : ttattggactcagcactccaGAGT--A--AT----TAA----AA-----A-AT----T----CT--A-AAAAAAAATAA-TT-----GAA-AT--ATATA---G---A-A-TAGC-ATT--------CGT--T--------TC-----AA---CGG-----------A-AA--A-A-G-G--A----T--T--T-TTTTTTTAG---A--TA-AGT-TCG--TG--AGTTCGTTTCC-A-TG-GT--A-ccttctcaaaaagccgggggtcacatcagcagattaataa
gi|15 : caGT--A--GT----TCA----AA-----A-AT----T----CT--A-AAAA----TGA-GA-----GAA-AT--AAATA---G---C-A-TTGT-ATT--------CAT--T--------TT-----AA---CGG-----------A-AT--T-T-G-C--A----T--T--T-TGT----AG---G--TA-GAT-TCG--TG--AGTTCGTTCCC-AT---GTTAA-CGA--A-A-AT--C---A---AAC---ATAC--CC-TTCCTG--GAGAC---ATGG-AT----T-CTCTGAAATTa
gi|5 : aaggatgcgtgaggctgacaataaagttact--A--TT----TAA----AG-----ATAA----T----CT--A-AAAAT---TAAGTT-----GAA-TT--TTATCTTAG---CGA-TATC-ATT--------CGT--TATTTTAAATT-----AAAAACATCAAACAAACAGA-AA--A-G-GAG--A----T--T--T-ATT----AG---A-ATA-GGA-TCAC-TG--AGTTCGTTTCA-ACTG-GT--A------------------A---AGA---GTAA--TT-TTGCTG--AGAAC---AT-TGAT----T-CACTGAGATTGGCCAACTT----TGTC-T--AA-T--G-G-AAC--G--T--GAGATTG-GA---A-TGT---TA--GCGAA----TT--T--T--ATTGAAAA--A-GTC---A--A-A-AA----TT----GAGT--A-CCT--G--G-A------TCGCA-TG---AA--TATTT-TA--T---T--C-----A--G-A-AATG-G-----G----T-GA-TG--T-TT-C-A-G-CT--GTT---G----TTGTTTTTAGAGTT-GTT-TTCAT-GCGTC-A-A-G-ATAATGAAA-TCTATGTCA------TTGCCA-G-G-A----CG--ACCTGAA-T-GGT-ATT---CAAA----TGT----AA-AGAAGCA--TTGAG---G--GA--TGACAC-AGGGA-AA-T-AA-A---------------------------------T--GA-G--G-C------G-GAGAACTA-----AATATGTTTA-TATT-TT----TTGTT-TTAG--C-AGTAGAAAA--G---TACTT--TT-T-T-GATA----CC--T-GT-A-GGGAT-CATTT-C-ATG-GTGATACATA---GATAAATAAAAGAACCGGTTGCAGAAAA-GCT-----TCAATAGGACCATTAGTGGAT---------ATTCCC-GAAACCTGATCAAAAACAGAAAGTTG-AAACACGCTTA--CGA--------------CGCCTCCAACCTTGTCTTTTTTTTTTTGCG--CTTGAATCTAAAGCAATGAGAAGAGAAAAAA--ACATTTCGGGTGTTT-GTTCAT-G-TTATACGCAGG--C---CAATATT
gi|20 : taA----AA-----A-ATA---T----CTTGA-AAA-----TAC-TG-----GAA-AT--ATATA---G---T-A-TTGT-ATT--------TGT--T--------TT-----A----TATG----------A-AA--A-A-G-G----------------TT----AA------------------TG--AGTTCGTTTCC-A-TG-GT--cgccgcgtaatcttgtgtatgaactcgttgcgtttattatctccagtgaacgaggagttatttcattcattcgggtttgtaggctgtctttctacacgcatcagacgaatatgaataacccatgtttcaccgaaattattttgcggtatttatcactgacatttaacagaagtaat
gi|8 : acaataagactgatttcaaagtaat----T----CT--T-AAA-----TGACTT-----GAA-A---ATAG----T---T-A-AATT-ACT--------TAA--T--------TT-----AT---CA------------G-AA--A-A-G-G--A----T--T--A-TTT----AG---ATA----GT-T-G--CA--GGTTCGTT-CC-AT---GT--AACGA--T-C-AC--C---A---AAA---ACGC--GC-TTGATG--GAGAC---AT-C-A------------AGATT---CA--AAACT-TGTC-A--AAGC--G-G-AA---G--TTCAAGACTG-AT---G-TCA---GA--GT--A----AT--TAAT--A----AAA--T-GT----A--A-A-AATACCT-----GA----A-ATA-----G-A------TAGTA-T----TG--TAATTGTT--T---T--
gi|21 : ggataaatgtatgggactcaatcagagtaattaaaatgtctgaaaatgagtgaaaatgggtagcactggaagtattgtttacagaaatggacattttaatagtatgtgagttcgtttccatgtaacggaccatcaaacataacctacctgaaacaccaaatttactgaaaatgaccacctctca-ATT--------TGT--T--------TT-----TT---CAG-----------A-AA--A-A-G-GC-A----T--T--T-TTT----AG---A--TT-GGT-TTA--TG--TGTTCATTTCC-AT-G-GT--AATGA--C-C-AT--C---A---AAC---ATAC--CT-ATCCTG--AAa
gi|16 : gaaatagatagtattgt-ATT--------CAT--T--------TT----------CAT-----------GGAA--A-A-G-GGCA----T--T--T-CT------A---ACATTTGGT-TCA--TG--AGTTCATTTCC-A-TG-GTA-A-CAA--A-C-AT--C---A---AACT--ATAA--CC-TTGCTG--GAT----------------T-CATTGAAATTGACCA--TGCATTTGTC-T--AA-A--ATG-AAG-TG--T--GGGACTA-GT---A-TAA---GA--GC--A----T
gi|22 : tagtaccgggt--T--------TT-----AT---CA------------A-AT--A-A-T-G--A----TCAT--T-TTT----AG---A--TA-GAT-TTT--CA--GGTTTGTTTCC-A-TG-GTA-A-CGA--T-C-CC--C---A---AAA---ACGC--GC-TTGATG--G
gi|4 : atataggttaaatgatacttaa-----------A-AA--A-A-G-G--C----A--T--T-TTT----AA---A--TA-GGT-TAA--TG--AGTTTGTT-CC-AT-G-GT--AACGA--C-C-A---T---C---AAC---ACAC--CC-----TA--AA-AC---AT-C-AAAA--T-TCC--AAA---GCC---------TGTC-A--AA-AAAG-GTAAA-TA--T--ACGACTG-ACCCTA-GAA---TA------A----TCAAT--C--A----AA------TC---A--A-A-AAA---C-----GAGT--G-AAA--TT-G-T------TAGCA-T----TG--AATTTATT--TGAGT--A-C---A--G-C-AA-G------------T-C--T---A-TT-A-A-A-ATA-ATT---T------GT-----GAGTTCGTT-TCAAT-G-GTA-AAC-G-ATA-TCAAA-T--ATGTCA------TTGCCG-AAG-A----CG--A----AAAT-A-T-ATT---CAAAAC--TGTC-AAAAGAGGC--A--TTTGG------AAC-TGACACCAAAAG-AA-T-AA-A--A-A-AA--------T-C-TAA----A--AA-T--GA-GC-G-A------AATAGG--TA-----GA-------A-T----TT----TCATTGTTCG--C-AG---AAAAAAG---TACTT--TTAT-A-TTGA----CA--TCGT-A-GA--TTCGTTT-CCACG-GTAATA-ATAAT-AAAATAAAAAA------CTTGCTGA-AA-ACGTTTCCTC-----------------AA---------AAT-CT-G--------T-AAAAACG--AAGT-G-CAACCCTCTAT--C-C--------------CCCCTTTC-CCTTGT--------------T--CCTGAA--------AATTTGAGAAAAAA----CACAGTTCGAGTGTTT-A---ATAGTTTT-ACACA-G--CAA-AAATATTGAGCAA------
gi|7 : tctgaTA-GTT-TTG--TG--AGTTCGTTTCC-A-TG-GT--A-AAG--A-TAAT--T---A---AAT---ATGG--CA-TTGCCG--AAGACGAAAT---GTAT--T-CA---AAA----CC---------TGTC----AA-A--A-G-AGC-AT--G--AGGGACG-AC-----TGA---CA--CC--A-------------------AAA--T-CT----A--A-A-AA----T-----GAGC--G-AAAT-A--G-A------TAAAA-T----TT--TATTTGTT--T---T--A-TC--A--A-C-AA-A-A-----G----T-AC-T---T-TT-T-AGG-TTA-G----------ATGT-----AGGATCGTT-TCCAC-G-AAA-A-A-A-ATAAT-AAA-T--A-ATAAAATAACTTGCTG-A------------A----AA-C-G-TCATTCCTCAGAATC-TGTC-AAAA-acnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|17 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagc---A---AAC---ATAC--CCTAC-CTG--GAAAT---GA-C-ATAA--TCCACTGAAATTG
gi|27 : --G-G-AAC-CG--T--AGGATTG-AC---A-AAA---TA--GC--A----AT--T--TAAA----AAA--A-GAC---A--A-A-AA----T-----GAAT--A-Aaagtgtgaggttcacataagaataataaaaaaaaactttatatgtctgaaaagggttaaaagatacctaatttataaaaagaataagattagaaaggttcacgggttcgtttcca
gi|15 : -CG--T--GAGGCTG-AC---AATAAAGTTACTGT--A----GT--T--C--A----AAA--A-TTCT--A--A-A-AA----T-----GAGA--G-AAAT-A--A-A------TAGCA-T----TG--TATTCATT--T---T-------------A-AC-G-GAATTTG----C-A--T---T-TTGT-A-G-GTA-GAT---T----C-GT-----GAGTTCGTT-CCCAT-G-TTA-A-C-G-AAAATCAAA-C--ATaatgg
gi|24 : aaggatgACTG-AC---A-TCA---GA--GT--A----AT--T--A--A----AAA--A-TTCT--G--A-A-AA----T-----GAGT--G-AAAT-G--G-A------TAGCACT----GA---ATTTATT--T---T--T-TAACA--G-A-AA-acccttcctggagacatggattctctgaaatt
gi|18 : aggatgtatgaa--A----TT--C--T--A----AAA----------A--A-A-AA----T-----AATT--G-AAA--T--ATA------TAGAA-T----AG--CATTCGTT--T---CAAC-G---G--A-A-AA-A-G-----GATTTT-T--T---T-TT-T-A-G-ATAAGTT---C------GT-----GAGTTCGTT-TCCAT-G-GTA-A-ttgacatttt
gi|20 : cagagtaattaaaaa--A----TT--T--C--A----AAG--T-AAT---A--A-A-AA----TATCTTGAAA--ATACT--G--G-AAATATATAGTA-T----TG--TATTTGTT--T---T--A-T---AT-G-A-AA-A-A-----G----------------------G-TTA-AT------------------GAGTTCGTT-TCCAT-G-GT
gi|8 : acaataagactg--T--T--A----AAA--T-GTCT--G--A-A-AA----T-----GAGT--G-AAAATG--G-G------TAGCA-CTGGAAG--TATT-GTT--T---A--C-----A--G-A-AATG-G-----A----C-A--T---T-TT-A-A----TA-GTA---T------GT-----GAGTTCGTT-TCCAT---GTA-A-CGG-ACCATCAAA-C--AT
gi|13 : ggataaatgtatgggactcaatcagagtaa--A----AAA--TTGTCTCTG--A-A-AA----T-----GAGT--G-AAAT-GTCG-G------TAGCA-C----TG--GATTTTTT--T---TGAC-----A--G-A-AA-T-G-----GAA--C-A--T---T-TT-T-T-G-ATG-GTG---C------GT-----GAGTTCG-T-TCCATAG-GTA-A-C-G-ACCATCAAA-C--ATaacctacctgaaacaccaaatttactgaaaatgaccacctctcatcttaaatgacttgaaaatagttaaattacttaatttatcagaaaaggattatttagatagttgcaggttcgttccatgtaacgatcaccaaaaacgcgcttgatggagacatcaagattcaaaacttgtcaaagcggaagttcaagactgatgtcagagtaattaataaaatgtaaaaatacctgaaatagatagtattgtaattgtttta
gi|22 : ttattggactcagcactccagagtat-ATA--G--G-T------TAA-A-T----GA--TACTTAAT--T---T--A-TC--A--A-ATAA-T-G-----A----TCA--T---T-TT-T-A-G-ATA-GAT---T----TT-C-----AGGTTTGTT-TCCAT-G-GTA-A-C-G-ATCCCCAAA-accctactctggaaacaccataattcactgaaattgaccaccttctcaaaaagccgggggtcacatcagcagattaataa
gi|21 : at--G-A------TAGTA-T----TG--TATTTGTT--T---T--T-TC--A--G-A-AA-AAG-----G----C-A--T---T-TT-TTA-GATTG-GTT---T----ATGT-----G--TTCATT-TCCAT-G-GTA-A-T-G-ACCATCAAA-C--ATaacgcgcttgatgg
gi|8 : gaaata-A------TAGT--T----AAATTACTTAAT--T---T--A-TC--A--G-A-AA-A-G-----G------A--T---TATT-T-A-G-ATA-GTT----------GC-----AGGTTCGTT--CCAT-G--TA-A-C-G-ATCACCAAA-A--ACG-CGC-----TTGATGGA-G-A----CATCA----AG-------ATT---CAAAACT-TGTC-AAAG-CGGA--AGTTCAA-------GAC-TGATGTCAGAGT-AATT-AATA--A-A-A---------T-G-TAA----A--AA-T---A-CC------------TGAAA-TA-----G--------A-TAGTATTGTAATTGTT-TTAacctatcctgaa
gi|16 : ggataaatgtatgggactcaatcagagtaattaaaatgtctgaaaatgagtgaaaatgggtagcactggaagtattgtttacagaaatggacattttaatagtatgtgagttcgtttccatgtaacggaccatcaaacataacctacctgaaacaccaaatttactgaaaatgaccacctctcatcttaaatgacttgaaa--TATTCATT--T---T--CAT---G--G-A-AAAG-G-----G----C-A--T---T-TC-T-A-A-C-A-TTTGG-T----TCAT-----GAGTTCATT-TCCAT-G-GTA-A-C-A-AACATCAAACT--AT
gi|7 : tagtaccggg-A-G-CTA-GTT---T----T-GT-----GAGTTCGTT-TCCAT-G-GTA-A-A-G-ATAATTAAA-T--ATGGC-A-----TTGCCGAA-G-A----CG--A----AA-T-G-T-ATT---CAAAACC-TGTC-AAAA-GAGC--A--T-GAGGGAC--GAC-TGACACC--------------A--A-A-A---------T-C-TAA----A--AA-T--GA-GC-GAA------A-TA-GA-TA-----AA-------A-TTTTA-T----TTGTT-TTAT--C-AAC--AAAA--G---TACTT--TT-T-AGGTTA----GA--T-GT-A-GGA-T-CGTTTCC-ACG-AAAAAA-ATAATAAATAATAAAATA----ACTTGCTGA-AA-ACG-----TC-----------------AT---------T---CC----------TCAGAAaaccttgctggattcattgaaattgaccatgcatttgtctaaaatgaagtgtgggactagtataagagcat
gi|26 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-G-A----AG--A----AA-T-A-T-ATT---CAAAACC-TGTC-AAAAGAGCA--T--TTG-----T--GAC-TGACACCAAAAG-AA-TAAA-A--A-A-A---------T-C-TAA----A--tctgtcaaaa
gi|8 : --GAC-TCA-ATCAGAGT-AA-T-TA-A--A-ATG---------T-C-TGA----A--AA-T--GA-GT-G-AAAATGGG-TAGCACTG-----GA-------AGTATTGTT----T--------A--C-AG---AAAT--G---GACAT--TT-T-A-ATAG----TA--T-GTGA-GT--T-CGTTT-C--CATGTAAC
gi|24 : ggataaatgtatggAC-TGACATCAGAGT-AA-TTAA-A--A-A-A---------TTC-TGA----A--AA-T--GA-GT-G-A------A-ATGGA-TAGCACTGA-------A-T-TTATT-------TT-TTAA--C-AG---AAAggaccatcaaacataacctacctgaaacaccaaatttactgaaaatgaccacctctcatcttaaatgacttgaaaatagttaaattacttaatttatcagaaaaggattatttagatagttgcaggttcgttccatgtaacgatcaccaaaaacgcgcttgatggagacatcaagattcaaaacttgtcaaagcggaagttcaagactgatgtcagagtaattaataaaatgtaaaaatacctgaaatagatagtattgtaattgtttta
gi|18 : aggatgtatgaaCAGAGT-AA-TTAA-A--A-A-A---------TTC-TAAAAAAA--AA-T--AA-TT-GAA------A-TA-TA-TA-----GA-------A-TAGCA-T----TCGTT-TCAA--C-GGAA-AAAG--GATTTTTTT--TT-T-A-GATAAGTTCG--T-G--A-GT--T-CGTTTCC-ATG-GTAAttgacatttt
gi|12 : GCTGA-AAGACG-----TC-----------------ATTCCTCAGAAA---CCTG--------TCAAAAAAG--AAAT-GCCAACTCTCGTA--C-ACCGCCTCCCTCCCCCCCCCCCC-CCTTGT--------------GGCCCTGAA--------AATTTGAAGAAAAAA---CACAGTTCGGGTGTT------ATAG-CTATAC-CA-G--CAA-AAATATTGAGCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAC-CTAGCTCAGACGGAATA
gi|9 : ttgCTGA-AA-ACG-----CC-----------------ATTCCTCAAA-A---CCTG--------TCAAAG-CG--AAGT-G-CAACCCTCTAA--C-A--------------CT--TGCC-CCGTAT--------------G--CCTGAA--------AATTTCAGAAAAAA----TACAGTCCGGGTGTTT-A---ATAG-CTATACGCA-GGAA---AAATATTGAGCAA------attatatgaataacccctcgt
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AAAAATCCCTCGTTTCCAAAGAAATTATACTTTGCGCTATTTAGCACTGTACAATATTTTTACAGAAATAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTTGGCATGCAGATTTCGGACATTCAGCGTCATTTTCCCTGTCACAAACATGTGTAATGAAAATCCAAGACAAATTTAAGTGACAAGCGC
Unaligned ( gi|11 ): TACTTTGCGGTATTTATCACTGAATATTTCTACAAAAATAATAATACTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCCGGCCTGTAAATTTCGGAAATTCTGCATGATTTTCCGCTGTCACATACATGTGTAATAAATAAAAAATCCAACACAATTTAGTGGCAAACGCAACGTTACACGATGT
Unaligned ( gi|14 ): ACACGTATCGCCTTACTGCCGAAAATAAACCGTTCTGGAAAATCAAGTCCGGCATGTAGATTCGTACATGTTCCTGCCTGTGACTTTTTCCCTGTCACATACATGTGTAATAAAAACAAATTCCCACCACAAATTGAAAGGGCTCTAAAGTGGCAAGCGCAACGTACAACCGAGATGTT
Unaligned ( gi|23 ): AGATTTCAGACATTTCCCTGTCACATACATGTATAATAAATACAAATTTAAGCGGCAAGAGCAACGTGCACGATGCTCTCTCTCTCTCTCTCTCTCTCT
Unaligned ( gi|25 ): ACCTCTCATATCCACAGAAATGATACTTTGCGGTATTTATCACTGAATATCGTTACAGAAATAATAAATTCTATACA
Alignments
lowQualScore : 11 11 22222222 11111 111 111 1 1111 22222 1 4444444444444444 1 11 22222222222222 333 1111 1 1 3333333 11 1 1111 1 2 111 2222222222 2222 333333333333333333333 1111 11 444444444444444 11 11111 22222 111111 22222222222 2222222 1 22 111 1 11 3333333333 333333 111 1 22222 2222 222 1111 2 2 222222222222 22 3333333333 22222 1111111 2222222 1111 11 11 11 11 111 11 333333 11111 11 2 2 1111 22222222 111 11 222222222 222 1 22222 222 111 11 11 111 111 4444444444444444444 1111 4444444444444444 44444444444444444 22222222 11111 111 11111 8888888888888888888888888888888888888888888888888888888888888888888888 1
lowQualScore : 66 11 1 99999999 6 99 1 888 77 5 9999 1 77 22222 666 000 1 5 5 1 5 5 1 5 2222 4 5 00000 8888 3 1 1 3 6 4444444444444444 99 11 0 1 0 888 11 6 55555555555555 3 44 5 222 0000 6 1 4 0 1 1 2 44 0 0 2222222 22 0 4444 0 1 4 77 1 6 99 6 3 000 5 6 55 1111111111 99 3 3333 3 8 888888888888888888888 3 7777 3 33 4 999999999999999 777 8 1 3 66 8 44444 55 3 8 88888 3 999999 33333333333 1 6666666 6 333 77 2 9 8 8 77 1 8 8 8 333 9 0 11 5555555555 0 1 0 0 8 55 0 777777 2 555 1 1 1 7 00000 1 5 77 3 77 77 888 66 5 1111 5 000 3333 66 5 5 0 5 0 3 5 111111111111 77 5 5 2 55 1 1 0 0 3333333333 66666 6 5 6 3 1 5 6666666 1 2222222 888 2222 55 00 5 33 3 1 1 88 777 3 111 1 99 8 222222 8 1 7 3 66666 6 6 888 6 55 3 0 5 5 2222 5 5 5 5 0 5 77777777 44 000 5 888888 22 5 5 222222222 77 9999 6 000 9 3 1 88888 6 3 6 777 0 6 555 6 55 3 33 222 1 6 99 8 8 444 5 5 4444444444444444444 9999 5 5 99 99 6 99 4444444444444444 1 6 22222222222222222 44444444 55555 111 55555 1 88 8 7777777777777777777777777777777777777777777777777777777777777777777777 3 6
lowQualScore : .. .. . ........ . .. . ... .. . .... . .. ..... ... ... . . . . . . . . .... . . ..... .... . . . . . ................ .. .. . . . ... .. . .............. . .. . ... .... . . . . . . . .. . . ....... .. . .... . . . .. . . .. . . ... . . .. .......... .. . .... . . ..................... . .... . .. . ............... ... . . . .. . ..... .. . . ..... . ...... ........... . ....... . ... .. . . . . .. . . . . ... . . .. .......... . . . . . .. . ...... . ... . . . . ..... . . .. . .. .. ... .. . .... . ... .... .. . . . . . . . ............ .. . . . .. . . . . .......... ..... . . . . . . ....... . ....... ... .... .. .. . .. . . . .. ... . ... . .. . ...... . . . . ..... . . ... . .. . . . . .... . . . . . . ........ .. ... . ...... .. . . ......... .. .... . ... . . . ..... . . . ... . . ... . .. . .. ... . . .. . . ... . . ................... .... . . .. .. . .. ................ . . ................. ........ ..... ... ..... . .. . ...................................................................... . .
lowQualScore : 88 00 7 22222222 7 22 0 999 99 7 7777 7 22 55555 000 000 9 7 7 4 7 0 0 0 0000 3 7 00000 6666 2 0 0 3 7 3333333333333333 22 66 8 0 6 222 00 7 00000000000000 5 33 2 777 8888 7 0 8 7 7 0 8 00 0 0 5555555 55 0 8888 0 2 0 88 0 7 22 7 5 777 7 6 88 0000000000 77 3 3333 2 0 444444444444444444444 2 0000 2 88 0 000000000000000 000 0 0 8 44 0 22222 44 2 0 88888 2 222222 44444444444 0 0000000 0 222 22 8 6 0 0 00 4 0 0 0 000 6 6 00 0000000000 8 8 8 8 0 00 8 222222 8 444 0 7 4 1 00000 4 7 99 3 77 77 999 77 0 2222 0 555 2222 99 1 0 4 0 0 0 7 111111111111 99 3 7 3 00 4 7 1 7 3333333333 00000 7 7 6 7 4 7 9999999 0 4444444 999 1111 00 00 7 66 0 4 0 11 555 2 777 0 00 0 888888 2 0 3 5 77777 7 7 333 7 88 7 0 7 7 1111 7 7 7 7 7 7 44444444 44 000 7 777777 99 7 7 999999999 99 3333 7 888 2 5 0 55555 7 2 7 555 7 7 333 7 88 5 33 888 0 7 88 0 0 000 7 7 3333333333333333333 4444 7 7 22 22 7 22 8888888888888888 0 7 55555555555555555 22222222 00000 777 88888 0 88 0 0000000000000000000000000000000000000000000000000000000000000000000000 3 7
consensus : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAA-TG--GGTAGCACTGG--A--T-TCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----TCTCAAACAAAGCGTGGGGNT-A-CA-----------TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-AA--ATG--ATACTTAATTTATCAGAAAANGATCAT--T-TTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTTGATGGAGA-------CATC-AA-ATTCAAAACCTGTC-A--AA-CGGAAGTACGAGACTGATNTCAGAGT-AATTAAA--AAAATCT-AAAAATACT--TGAAA-TAGATAGTATTGTATTTGTTTTATCTGAAAAGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGT-AA-CGACC-ATC--A-----AC--C--CC----CCCTGA----AAACATCAA--ANTC-AC-GAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACNTCAG-AGTAATTAA-AAA-ATCTNAAAACGAGTG-AAAT-GNATAGCATTGGA--T-TTGTT----T-AC--GGTAA--G---TCTTTATTTAGATAGGTTTGTGAGTTTGTTTCCATGGTAAC-GA-CCATCA-AACAT-AC-C-TTCC-TGAAAACACCATAAT--TC----------AAAGCCTGTC-AAANNGAAGNACAAGACTGGTGTG--AGAGTAATTAAAAAATTCT-AAAA-----TAA-TTGAAA--TATATAG-NATAT-CATTCGTTTTAA--CA-NAAAAAG-GA----TT-TTTTAGA-ATAGGTTCG--TG--AGTTCGTTTCC-A-TG-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATC-ATAAT-TCACTGAGATTGGC--C--A----TGTC--N--AA-CGG-AACCGTAGGATTG-AC------ATAATAGC--A----TTT--NA----AAAA-GTC-AAA-AAT--GAGTAACATGGATAGCATNATATTTATTT---TAT--AGAAA-GGGTGA--T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTC-ATTGCCGAAG-ACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGAGNA--ATTGAGG---GAC-TGACACC-AAAAGAAT-AAA-A-AA---------TCTAAA--AA-T--GA-GC-GAAATA-GATAGAAT-TTATTTTGTT-TTAGC-AG---AAAAGTACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA---AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
Reference ( family-683 ) : TGTATGGGACTCAN-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAA-TG--GATAGCACTGN--A--T-TCG--TTTTGACAGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTNC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----TCTCAAACAAAGCGTGGAGNT-A-CA-----------TCA--AG--AGTAATAAAAAATATCTNAAAATG-ANT--GAAA-TAGG--T-AG--ATG--GTATTTGNTTTATCAGAAAAGG--CAT--T-TTT-AGATAGGTTCGCGGGTTCGTTTCCATGGTAACGACCATCAAACACGCCCTTGCTGGAGA-------CATC-AA-ATTCAAAACCTGTC-A--AA-CGGAAGTACAA-ACTGACGTNAGAGT-AATTAAA--AAAATCT-AAAAATACT--TGAAA-TAGATAGNATTGTATTTGTTTTATCNGAAAANGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGT-A--CGACC-ATC--A-----AC--C--CC----CCCTGA----AAACATCAA--ATTC-A---AAA-------CCTGTCAAAAGGGAAA-TATGNGACTGACGCCAG-AGTAATTAA-ANA-ATCNAAAAACGAGTG-AAAT-GTANAGCATTGNA--T-TTGTT----T-AC--AGNAA--G---TCTTT-TTTAGATAGGTTCGTGAGTTCGTTTCCATGGTAAC-GA-CCATC--AACAT-AC-C-TTGC-TGAAGACATCATAAT--TC----------AAAACCTGTC-AAAANGAAGCGCGA-ACTGATATN--AGAGTANTTAAAAAATTCT-AAAA-----TGA-TTGAAA--TANATAG-NATAN-TATTCGTTTTAN--CA-NAAAAAG-GA----TT-TTTTAGA-ATAGGTTCG--TG--AGTTCGTTTCC-ATTG-GT-ACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATC-ATAA--TCACTGAAATTGGC--C--A----TGTC--N--AA-CGG-AANCGTGGGACTG-AC------ATAANAGC--A----TTT--NA----AAAT-GTC-AAA-AAT--GAGTGANA-GGATAGCATNGTATTTATTT---TNT--AGAAA-GGGT-A--T-TTTTAGNTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTCAATTGCCG-AG-ACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAA-AGAA--ATTGAGG---GAC-TGACACC-AGAGNAAT-AAA-A-AA---------TCTAAA--AA-T--GA-GC-G-AATAGGATAGAATATTATTTTGTT-TTAGC-AG---AAAGGTACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTNC-CCCTTGT--------------G--CCTGAA--------AATTTGAGAA---AAAAA---CACAGTTCGGGTGTTT-A---ATAGTTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAC-CTAGCTCAGACGGAATA
gi|1 : TGTATGGGACTCAG-AT--CAGAGTAAATAAAAA-AATGCTCTGAAAATGAGTGAAA-TG--GGTAGCACTGG--A--T-TTG--TTTTGACAGAAATGG-ATA-----TTTTTT-GATA---GGTAAATGAGTTCGTTTCCA-T-GGTAACCGACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----TCTCAAACAAAGCGTAGAAAT-A-CA-----------TCA--AG--AGTAATAAAAAATATCTTAAA-TG-ACT--GAAA-TACG--T-AA--ATG--ATACTTAATTTATCAGAAAATAATCAT--T-TTT-AGAAAGGTTTGCAGGTTCGTTCCC--GGTAACGATCACCAAACACGCGCTTGATAGAGA-------CAT--AA-ATTCAAAACCTGTC-A--AA-CGGAAGTACAA-ACTGATTGGAGAGTAAATTAAA--AAAATCT-AAAAA-ACT--TGAAA-TAGATTGTATTGTATTTGTTTTATCTGAAAAGGGCA--T-TTTTTAGATAGGTTGATGAGTTCGTTTCCATGGT-A--CGACC-ATC--A-----AC--C--CC----CCCTAA----AAACATCAA--ATTC-A---AAG-------CCTGTCAAAAGGGAAA-TATGTGACTGACCCTGG-AATAATTAA-TCA-ATCAAAAAAC-AGTG-AATT-GTAAAGCATTGAA--T-TTATT----T-AC--AGTAA--G---TCTTTATTTAAATAAGTTTGTGAGTTTGTTTCCATGGTAAC-GG-CCATC--AATAT-AC-C-TTCC-TAAAAACACCATAAT--TC----------AAAGCCTGTC-AAAAAGAAGTATAA-ATTGGTATG--GGAGTATCTAAAAAATTCT-AAAA-----TAA-TTGAAA--TCTAT-G-CATAT-CATTCGTTTTAG--CA-TAAAAAG-GA----TT-TTTTAAACATAGGTTCG--TG--AGTTCGTTTCC-ATTG-GT-ACGAACGC-TAA--------AC--ATACCCATGCTG--GATACATC-ATAA--TCACTGAGATTGGC--CATA----TGTC--T--AA-CGG-AACCGTAGGATTG-AC------ATAATAGC--A----TTT--CA----AAAT-GTC-AAA-AAT--GAGTAACA-GGATAGCATAATATTTATTT---TCT--AGAAA-GGGT-G--T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTCAATTGCCG-AG-ACG-A----AA-TG-T-ATTACAAAACC-TGTCAAAA-AGAA--ATCGAGC---GAC-TGACACC-AGAAGAAT-AAA-A-AA---------TCTAAA--AA-T--GA-GC-G-AGTAGGATAGAATATTATTTTGTT-TTAGC-AG---AAAGGTTCTTTT-T-A-GTTACAT-GTA--GG-TCGTTT--CACAGTAACA-ATAAT-GATAAA-A-AAAAGGC---TTGCTGAAA-A-CGTC-------------------AT----------A-CC-G-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTAAGGA---AAAAAAACCACAGTTCGGGTGTTT-A---ATAGCTA-ACGCAGC---AAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACTCTAGCTCAGATGGAATA
gi|12 : GCTGAAAGA-CGTC-------------------ATTCCTC-AGAAA-CCTG-TCAAAAAA-GAAA--TGCCAACTCTCGTA--C-ACCGCCTCCCTCCCCCCCCCCC-CCCTTGT--------------GGCCCTGAA--------AATTTGAAGA---AAAAA---CACAGTTCGGGTGTT------ATAGCTATAC-CAGC-AAAAATATTGAG-CAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAC-CTAGCTCAGACGGAATA
gi|13 : ttgTATTGGACTCAGCACTCCAGAGTA--TAAAATTGTC--TCTGAAAATGAGTGAAA-TGTCGGTAGCACTGG--A--T-TTT--TTTTGACAGAAATGGAACA-----TTTTTT-GAT----GGTGCGTGAGTTCG-TTCCA-TAGGTAAC-GACC-ATCAAAC-ATACCCTACTCTGGAAACACCATAATTCACTGAAATTGACCAC-CT----TCTCAA--AAAGCCGGGGGTC-A-CA-----------TCAGCAG--ATTAATAAattatatgaataacccctcgt
gi|15 : tGTAGTTCAAAA-ATT---CTAAAAATGAGAGAAA-TA--AATAGCATTGT--A--T-TCA--TTTTAACGGAATTTG--CA-----TTTTGTAGGTA---GATTCGTGAGTTCGTTCCCA-T-GTTAAC-GAAA-ATCAAAC-ATACCCTTC-CTGGAGACAT--GGATTCTCTGAAATT
gi|16 : aaggatgcgtgaggctgacaataaagttactTAGTACCGGGTA--T-TCA--TTTTCATGGAAAAGG-GCA-----TTTCT--AACATTTGGTTCATGAGTTCATTTCCA-T-GGTAAC-AAAC-ATCAAACTATAACCTTG-CTGG----------ATTCATTGAAATTGACCATGCATTTGTCTAAAATGAAGTGTGGGACT-AGTA-----------T-A--AG--AGCA
gi|17 : AAAC-ATACCCTAC-CTGGAAATGACATAATCCACTGAAATTGA---------------------AGTGTGAGGTTCA-CA-----------T-A--AG--AATAATAAAAAAAAACTTTATATG-TCT--GAAA--AGGGTT-AA--AAG--ATACCTAATTTAT---AAAAAG--AATAAG-ATT-AGAAAGGTTCACGGGTTCGTTTCCAt
gi|18 : --AGAGTAATTAAAAAATTCT-AAAAAAAAATAA-TTGAAA--TATATAG-AATAG-CATTCGTTTCAA--CG-GAAAAAG-GATTTTTT-TTTTAG--ATAAGTTCG--TG--AGTTCGTTTCC-A-TG-GT-A
gi|19 : cTGTATGGGACTCAG-AT--CAGAGTAATTAAAAC--TT--TCTGAAAATGAGTGAAA-TG--GGTAGCACTGG--A--T-TTG--TTTTGACAGAAATGG-ACATCTATTTTTTT-GATA---AGTTCa
gi|2 : TCAGAGT-AATTAAA--ATTTTCT-AAAAATGAG--TGAAAATGGGTAG-ACTGGATTTGTTTTGACAGAAATGGACA--TATTTTTA--TAGGTTCGTGAGTTCGTTTCCATGGT-AA-CAACCCATA--A-----ACATC--CT----CCCTGG----AAACA-CAATAATTC-ACTGAAATTGACCTCCTCTCAAACA--AAG-CGTGGGGTTCACATCAGTAGTAATAAA-ATATATCTTAAAATGACTA-AAAT-----AG-------------GTT----A-AT---GTAA--------TTT-TTTAGATAGGTTTGCAGGTT-GTTTCCATGGTAAC-GATCCACA--AAAAC-GCGC-TTGA-TGGGGACATCA-AAT--TTAATAAAAAAAAAAACC-GTC-AAATCGAAGAACAAGACTGATGTC--AGAGTAATT-AAAAATTCTAAAAA-----TAC-TTAAAA--TAGATAG-TATGG-TATTTGTTTTAT--TC-TGAAAAG-GC----AT-TTTTAAA-ATAGGTTAA--TG--AGTTTGTTTCC-A-TG-GT-ACGAACGC-CAA--------AC--ATAACCTTGCTG--GAGACATC-ATAAT-TTACTGAGATTGGCCAC--A----TGTCT-A--AA-CGG-AACCGTAGGATTG-AT------ATAATAGCA-A----TTT--TA----AAAA-GT--AAA-AAT--GA-TAACATGGATAGCATAATATTTATTT---TATC-AAAAA-GGGTGA--T-TTTCAGCTAG-TTTTGT-----GAGCTCGTT-TCCAT--GT-AGACG-ATAATC-AAT--ATGTC-ATTGCCGAAG-ACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAG-AGCA----TGAGG---GAC-TGACACC-AAAAGAA--AAA-A-AA---------TCTGAA--AATT--GAGGC-GAAATA-GATAGAAT-TTA-TTTGTT-TTAGC-GA---AAAGATACTTTT-TAA-GTTACAT-GTA--GGATCGTTT-CCACG--AACA-ATAA-----AAA-A-AAAAAAC---TTGCTG-AA-A-CGTC-------------------GTTCCTCAA--AA-CCTG-TCAAAAA---AAG--TG-CAACCCTCTAAGTC-C--------------CCCCCAC-CCCCTGT--------------G--CCTGAA--------AATTTGAG-A---AAAAA---CA-AGTTCGGATTTTTAA---ATAGTTATACGCAGCAAAAAATATTGAGANNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC-CTA-CTCAGACGGA
gi|20 : ggatgtatgggacttcaaAG-ACTGATTTCAAAGT-AAT-AAA--AATATCTTGAAAATACT--GGAAA-TATATAGTATTGTATTTGTTTTATATGAAAA------------------AGGTTAATGAGTTCGTTTCCATGGT-tatgaataacccctcgttcaacagaaattatactttgcggtattatcacatgaatatttctacagaataataaatactgtacagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagtctcagacatttttctctgtcacatacatgtgtaataaaaacaaatccaaca
gi|21 : acaataGAAA-TAGATAGTATTGTATTTGTTTTTTCAGAAAAAGGCA--T-TTTTTAGATTGGTTTATGTGTTCATTTCCATGGTAA--TGACC-ATC--AAACATAC--C--TA----TCCTGA----A
gi|22 : A-TAGG--TTAA--ATG--ATACTTAATTTATCAAATAATGATCAT--T-TTT-AGATAGATTTTCAGGTTTGTTTCCATGGTAACGATCCCCAAAAACGCGCTTGATGG
gi|24 : atTGTATGAAACTGAC-AT--CAGAGTAATTAAAAA-ATT---CTGAAAATGAGTGAAA-TG--GATAGCACTGA--A--T-TTATTTTTTAACAGAAATTG-ACA-----TTTT
gi|26 : aggaG-AAG-A----AA-TA-T-ATT-CAAAACC-TGTCAAAAGAGCA--TTT--GT---GAC-TGACACC-AAAAGAATAAAA-A-AA---------TCTAAA--
gi|27 : GG-AACCGTAGGATTG-AC------AAAATAGC--AA---TTT--AA----AAAAAGAC-AAA-AAT--GAATAAAA-
gi|3 : AAATGA-TCA-----TTTTAA-GATA---GGTTTGCAGGTTCGTTTCAAAT-GGTAAA-GATCGACCAAAA-ATAGCGTTG-ATGGAGACAC------TCA---AAGTTCAACAC-C-----TGTT---CAAAACG--GAAGT-A-CAAGACTTGATAGTCAG-AGTCAGTAA-AAAAAAT-TCCAAAAATGCGTT--GAAAATGGGA-T-AGTAATAATGTATTTGTTTTATCTGAAAGGG--CAT--T-TTTTAGATAGGTTAGTGAGTTCGTTTCAATGGTAACGACCATCAACCCCCCCCCCCCCAAAAAAAAACCCCATC-AA-AATCAAAGTCTGTC-AGAAA-GGGAAATATGGGACTGACCCTAGA---AATTAATTTCAAATCA-AAAAAAACGAGTGAAA-TTGATAGCATTGAAT-----TTAT-----------A--G-TTTTGAG------------GTTCTTTCCCATGGT-AAACGATC-AACGAA-----AC--A--ACATAGCTTTGAGTGGAGACATCAA--AATT-ATAAAAA-------CCTGCCAAAACAGAAGCTATAGG-CTGAATTCAG-AGCAATTAA-AAA-AAATTACAATAATTG-AAATAGTA--GTATTGTA--T-TTGTT----TTATCTGGAAA--GGCATTTTT-TTTTTAT-GGTTCGTGAGTTTGTTTCCATGGTAAC-GG-CCATATAAATAT-AC-CCTTCC-TAAAAACACCATGATATTC----------AAAGCCTGTC-AAAGGGAAGTTAAA-ATTGGTATGTGAGAGTAATTTAAAAAATCTGAAAA-----TAA-TTGGAAATTATGTAG-CATATCTATTCGTTTTAAAACA-TAAAAAG-AAAGAGTT-ATTTAGATAT-TGTTCAGATAGAAGTTCGTTTCCGAGTGCGCCACGATAGCGCAATAGGCGCTAT--ATTTCCTTGCTGATGA-ACATC-ATGAATTCACTGAGATGGGC--C--AC---TGTC--TCAAA-CG--AACCGTAGGATTGGAT------ATAATAGC--AAATTTTT--AA----AAAA-GTC-AAATAATTGAAGTAACA-TGATAGCA--ATATT-ATTT---TAT--CAGAC-GGGT-GGTT-TTTCAGCTAGTTTTAGT-----GAGTTCGTTATCCATG-GT-A-ACGCATAATCAAATA-ATGTC-ATTGCCG-AACGCG-A----AATTG-TCATT-TAAAACCTTGTCAAAA---GA--GCTAAGG---GACTTGACACCAAAAGAAAT-AAA-ACAAAAGAAATTCTTTAAACCAA-TCAGA-GCGG-AATA--ACAGAAT-TT-TTTTGTT-CT-GCGAG---AAGAGTACTTTT-T-AGGTTACAC-GCACGGAATCGTTTCCCACGA-AACA-ATAAT-AAtgg
gi|4 : atatttcaagaAAAAAG-GC----AT-TTTTA-A-ATAGGTTAA--TG--AGTTTG-TTCC-A-TG-GTAACGACCAT-C-A--------AC--ACACCCT-------AAAACATC-AAAA--TTCC--AAA---GC--C-------TGTCAAA--AA-AGGTAAATATACGACTG-ACCCTAGAATAAT--C--A----ATC--AA----A-----TCAAAA-AAC--GAGTGAAATTGTTAGCATTGAATTTATTTGAGTAC--AGCAA-GTCT-A-----TTAAAATAA--TTTGT-----GAGTTCGTT-TCAATG-GTAA-ACG-AT-ATCAAAT--ATGTC-ATTGCCGAAG-ACGAA----AA-TA-T-ATT-CAAAA-C-TGTCAAAAGAGGC--ATTT-GG---AAC-TGACACC-AAAAGAATAAAA-A-AA---------TCTAAA--AA-T--GA-GC-GAAATAGG-TAGAAT----TTTCATTGTTCGC-AGAA-AAAAGTACTTTTAT-A-TTGACATCGTA--GATTCGTTT-CCACGGT---A-ATAAT-AATAAA-ATAAAAAAC---TTGCTGAAA-A-CGT---------------------TTCCTCAA--AA-TCTG-T-AAAAAC-GAAG--TG-CAACCCTCTAT--C-C--------------CCCCTTT-CCCTTGT--------------T--CCTGAA--------AATTTGAG-A---AAAAA---CACAGTTCGAGTGTTT-A---ATAGTTTTACACAGC-AAAAATATTGAG-CAA------aa
gi|5 : tctgaAA--CA-GAAAAGGAGA----TT-TATTAGA-ATAGGATCAC-TG--AGTTCGTTTCA-ACTG-GT-A---------AA--------GA--GTAATTTTGCTG--AGAACATTGAT----TCACTGAGATTGGC--C--AACTTTGTC--T--AA-TGG-AA-CGTGAGATTG-GA------ATGTTAGCGAA----TTT--TATTGAAAAA-GTC-AAA-AATT-GAGTACCT-GGATCGCATGA-AT--ATTT---TATTCAGAAATGGGTGA--TGTTTCAGCT-GTTGTTGTTTTTAGAGTT-GTT-TTCATGCGT-C-AAG-ATAATGAAATCTATGTCA-TTGCCA-GG-ACG-ACCTGAA-TGGT-ATT-CAAA----TGT---AA-AGAAGCATTGAGG---GA--TGACAC--AGGGAAAT-AAATG-AG---------GCGGAG--AA-C--TA------AATATGTTT--ATATT-TTTTGTT-TTAGC-AGTAGAAAAGTACTTTT-T-T-GATACCT-GTAG-GGATCATTT--CATGGTGATACATA---GATAAATA-AAAGAACCGGTTGCAGAAA-AGCTTCAATAGGACCATTAGTGGATATTCCCG-A--AA-CCTGATCAAAAACAGAAAGTTG-AAACACGCTTA--CGA--------------CGCCTCCAACCTTGTCTTTTTTTTTTTGCG--CTTGAATCTAAAGCAA--TGAGAAGAGAAAAA---AACATTTCGGGTGTTT-GTTCAT-GTTATACGCAGacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|6 : taatttaaagataatctaaaaattaagttgaattttatcttagcgatatcattcgttattttaaattaaaaacatcaaacaTGAGTTTGTTTCCA-T-GATAAC-GACC-ATAAACC-ATTCCCTAC-CTACAAACATCATAATTCACTGAAATTGAGCAC-C-----TCTCAAACAAAGCATAGGGTTCA-CA-----------TC---AG--AGTAAT-AAAAATATCTTAGAATG-ACT--GAAA-TAGGT-T-AA--ATG--ATACTTAATTTATCAGAAAACGATTAT--T-TTT-AGATAGGTTTGCAGGTTCGTTTCCAAAGTAACGATCTCCAAACGCGTGCTTGATGGAGA-------CATCAAA-ATTCAAAACCTGTCAA--AA-CGGATGTGCAAGACTGATGTCAGAGT-AATTAAA--AAAATTT-AAAAATACT--TGAAA-TAGATAGTATTGTATTTGTTTTATCTGAAATAGGCATCT-TTTTTAGATAGGTTAATGAGTTTGTTTCCATAGTAA--CGA-C-ATC--A-----AA--CAACC----CCCT-A----AAACATCAA--AATCTA---AAG-------CCTGTCAAAAGGAAAA-TATGGGACTGACCCTAG-AATGATTAATCAA-ATCAACAAACGAGTG-AAAT-TGATAGCATTGGC--T-TTATTTGAGT-AC--AGTAA--G---TCTTTATTTAGATAAATTTGTGAGTTTGTTTCCATGGTGAC-GA-CCATCA-AACAT-AC-C-CTTCATGGAAACATCATAAT--TC----------AAAATCTGTCTTAACAGAAGAATAAGACTGATG-C--AAAGTAATTAAAATATTATGAAAA-----TAC-TTAAAA--TAgccaatattcgccgcgtaatcttgtgtatgaactcgttgcgtttattatctccagtgaacgaggagttatttcattcattcgggtttgtaggctgtctttctacacgcatcagacgaatatgaataacccatgtttcaccgaaattattttgcggtatttatcactgacatttaacagaagtaat
gi|7 : tttatcggtaaaTGGTGTG--AGAGTAATTAAAAA-TTCT-AAAAA----TGA-TTCAAA--TATATAG-AACAT-CATTCGTTTTAA--CATAAAAAAG-GA----TTCTTTTAAAGATAGTTTAA--TG--GGTTCGCTTCC-A-TG-GTAACGAACGC-CAA--------ACATATACCCTTGCTG--GAGAGATC-ATAAT-TCACTGAGATTGGC--C--
gi|7 : tAGCTAGTTTT-GT-----GAGTTCGTT-TCCATG-GT-A-AAG-ATAATTAAAT--ATGGC-ATTGCCGAAG-ACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGAGCA----TGAGGGACGAC-TGACACC------------A-A-AA---------TCTAAA--AA-T--GA-GC-GAAATA-GATAAAATTTTA-TTTGTT-TTATC-AAC--AAAAGTACTTTT-T-AGGTTAGAT-GTA--GGATCGTTT-CCACGAAAAAA-ATAATAAATAAT-A-AAATAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-AG-AA-TCTG-TCAAAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgtgagttcgtttccatggtaaagataattaaatatggcattgccgaagacgaaatgtattcaaaacctgtcaaaagagcatgagggacgactgacaccaaaatctaaaaatgagcgaaatagataaaattttatttgttttatcaacaaaagtactttttaggttagatgtaggatcgtttccacgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|8 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTATGGGACTCA--AT--CAGAGTAATTAAAA---TG--TCTGAAAATGAGTGAAAATG--GGTAGCACTGG--AAGTATTG--TTT--ACAGAAATGG-ACA-----TTTT---AATA---G-TATGTGAGTTCGTTTCCA-T--GTAACGGACC-ATCAAAC-ATAACCTAC-CT-GAAACACCA-AATTTACTGAAAATGACCAC-C-----TCTCA
gi|8 : ggataaa-TATGGGACTCA-ATCAG-AGTAATTAA-AAT-GTCTGAAAATGAGTGAAAAT-GGGTAGCACTGGAAGTATTGTT----T-AC--AGAAATGG---ACATT-TT--AATA-GTATGTGAGTTCGTTTCCAT-GTAACGGA-CCATCA-AACATAAC-C-TACC-TGAA-ACACCA-AAT--TT----------A----CTG---AAAATGA----CCA-CCTCTCAT---------CTTAA------------A-----TGACTTGAAA-----ATAGTTAAAT-TACTTAATTTAT--CA-G-AAAAG-GA----TT-ATTTAG--ATAG--TTG--CA--GGTTCG-TTCC-AT---GTAACGATCAC-CAA--------AA--ACGCGCTTGATG--GAGACATC-AAGAT-TCA---AAACT-------------TGTC--A--AAGCGG-AAGTTCAAGACTG-AT------GTCAGAGT--A----ATTAATA----AAAT-GT--AAA-AAT--ACCTGAAATAGATAGTATTGTAATTGTTT---Ttcttaaatgacttgaaaatagttaaattacttaatttatcagaaaaggattatttagatagttgcaggttcgttccatgtaacgatcaccaaaaacgcgcttgatggagacatcaagattcaaaacttgtcaaagcggaagttcaagactgatgtcagagtaattaataaaatgtaaaaatacctgaaatagatagtattgtaattgtttta
gi|8 : ggataaatgATCTTAAA-TG-ACTTGAAAA-TAGT--T-AA--AT----TACTTAATTTATCAGAAAAGG---AT--TATTT-AGATAG--TTGCAGGTTCGTT-CCATG-TAACGATCACCAAAAACGCGCTTGATGGAGA-------CATC-AAGATTCAAAACTTGTC-A--AAGCGGAAGTTCAAGACTGATGTCAGAGT-AATTAAT--AAAATGT-AAAAATACC--TGAAA-TAGATAGTATTGTAATTGTTTTAa
gi|9 : ggataaatgtatgggactcaatcagagtaattaaaatgtctgaaaatgagtgaaaatgggtagcactggaagtattgtttacagaaatggacattttaatagtatgtgagttcgtttccatgtaacggaccatcaaacataacctacctgaaacaccaaatttactgaaaatgaccacctctcCTGAAA-A-CGCC-------------------ATTCCTC-A--AAACCTG-TCAAAG-C-GAAG--TG-CAACCCTCTAA--C-A--------------CT--TGC-CCCGTAT--------------G--CCTGAA--------AATTTCAGAA---AAAA----TACAGTCCGGGTGTTT-A---ATAGCTATACGCAGG-AAAAATATTGAG-CAA------
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAAATCCCTCGTTTCCAAAGAAATTATACTTTGCGCTATTTAGCACTGTACAATATTTTTACAGAAATAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTTGGCATGCAGATTTCGGACATTCAGCGTCATTTTCCCTGTCACAAACATGTGTAATGAAAATCCAAGACAAATTTAAGTGACAAGCGC
Unaligned ( gi|11 ): TACTTTGCGGTATTTATCACTGAATATTTCTACAAAAATAATAATACTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCCGGCCTGTAAATTTCGGAAATTCTGCATGATTTTCCGCTGTCACATACATGTGTAATAAATAAAAAATCCAACACAATTTAGTGGCAAACGCAACGTTACACGATGT
Unaligned ( gi|14 ): ACACGTATCGCCTTACTGCCGAAAATAAACCGTTCTGGAAAATCAAGTCCGGCATGTAGATTCGTACATGTTCCTGCCTGTGACTTTTTCCCTGTCACATACATGTGTAATAAAAACAAATTCCCACCACAAATTGAAAGGGCTCTAAAGTGGCAAGCGCAACGTACAACCGAGATGTT
Unaligned ( gi|23 ): AGATTTCAGACATTTCCCTGTCACATACATGTATAATAAATACAAATTTAAGCGGCAAGAGCAACGTGCACGATGCTCTCTCTCTCTCTCTCTCTCTCT
Unaligned ( gi|25 ): ACCTCTCATATCCACAGAAATGATACTTTGCGGTATTTATCACTGAATATCGTTACAGAAATAATAAATTCTATACA
Alignments
lowQualScore : 11 11 22222222 11111 111 111 1 1111 2222222 11111 222222222222 1 11 22 1111 111 11 1 1111 1 111 111111111 333333333333333333333 1111 11 55555555555555 11111 2222 111111 2222222222222 11111 111 111 1111 3333333333 1 2 11111 111 55555555555555555555555555555555 2222 222 11111 222222222222 22222222222 1111 1111111 2222222 1111 11 111 11 2222 11111 11 1111 1 1111 111 11 222222222 1111 222222 111 111 11 11 111 111 4444444444444444444 1111 4444444444444444 44444444444444444 22222222 1 111 11111 8888888888888888888888888888888888888888888888888888888888888888888888 1
lowQualScore : 33 11 1 99999999 6 99 77 77 5 9999 3 77 22222 666 000 1 5 5 1 5 5 0 5 2222 4 5 0000000 77777 1 555555555555 99 11 0 0 8 11 6 22 6 99 1 99 1 6 1 0 1 1 1 7777 777 22 0 4444 0 1 1 6 99 6 3 000 5 0 66 999999999 99 3 88 3 8 888888888888888888888 3 7777 3 33 1 00000000000000 777 8 3 66 8 44444 22 3 8 1111 3 888888 5555555555555 44444 6 22 0 3 333 88 22 888 8 6 5555 5555555555 0 1 0 0 8 22 0 2222 8 99 0 9 66 0 99999 5 66 000 66 5 22222222222222222222222222222222 5 1111 5 111 5 33333 66 66 5 666 0 11 5 999999999999 77 5 5 1 0 0 55555555555 99 77 1111 5 33 77 5 6666666 2222222 66 2222 5 5 5 33 3 0 3 3 3 3 111 99 8 5555 7 66666 6 6 6 6 6 55 6 2222 1 5 5 5 66 1 9999 44 000 5 1 5 44 5 888888888 77 6 99 6 6 3333 77 6 6 888888 3 6 888 99 6 6 555 6 55 3 33 222 1 6 99 8 8 444 5 5 4444444444444444444 9999 5 5 99 99 6 99 4444444444444444 1 6 22222222222222222 44444444 2 6 111 55555 1 88 8 7777777777777777777777777777777777777777777777777777777777777777777777 0 3 6
lowQualScore : .. .. . ........ . .. .. .. . .... . .. ..... ... ... . . . . . . . . .... . . ....... ..... . ............ .. .. . . . .. . .. . .. . .. . . . . . . . .... ... .. . .... . . . . .. . . ... . . .. ......... .. . .. . . ..................... . .... . .. . .............. ... . . .. . ..... .. . . .... . ...... ............. ..... . .. . . ... .. .. ... . . .... .......... . . . . . .. . .... . .. . . .. . ..... . .. ... .. . ................................ . .... . ... . ..... .. .. . ... . .. . ............ .. . . . . . ........... .. .. .... . .. .. . ....... ....... .. .... . . . .. . . . . . . ... .. . .... . ..... . . . . . .. . .... . . . . .. . .... .. ... . . . .. . ......... .. . .. . . .... .. . . ...... . . ... .. . . ... . .. . .. ... . . .. . . ... . . ................... .... . . .. .. . .. ................ . . ................. ........ . . ... ..... . .. . ...................................................................... . . .
lowQualScore : 00 00 7 22222222 7 22 99 99 7 7777 4 22 55555 000 000 9 7 7 4 7 0 8 0 0000 3 7 1111111 55555 0 888888888888 22 66 8 6 0 00 7 55 7 22 0 22 0 7 0 7 7 0 0 0000 555 55 0 8888 0 4 0 7 22 7 5 777 7 1 22 333333333 77 3 88 2 0 444444444444444444444 2 0000 2 88 0 55555555555555 000 0 8 00 0 22222 44 2 0 6666 2 666666 2222222222222 88888 0 88 8 2 000 88 22 000 0 8 6666 0000000000 8 4 8 8 0 00 8 2222 2 22 8 8 99 0 44444 0 99 000 77 7 44444444444444444444444444444444 0 2222 0 666 0 22222 99 99 0 222 1 77 7 444444444444 99 3 7 4 1 7 66666666666 22 77 4444 7 77 99 7 9999999 4444444 77 1111 7 7 7 66 0 7 0 3 5 5 777 00 0 4444 5 77777 7 7 7 7 7 88 7 1111 4 7 7 7 44 4 3333 44 000 7 4 7 11 7 666666666 99 7 22 7 7 3333 77 7 7 000000 2 7 333 22 7 7 333 7 88 5 33 888 0 7 88 0 0 000 7 7 3333333333333333333 4444 7 7 22 22 7 22 8888888888888888 0 7 55555555555555555 22222222 0 7 777 88888 0 88 0 0000000000000000000000000000000000000000000000000000000000000000000000 7 3 7
consensus : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAA-TG--GGTAGCACTGG--A--T-TCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGTGGGGTTC-A-CA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-A--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATC-AA-ATTCAAAACCTGTC-A--AA-CGGAAGTACGAGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACT--TGAAA-TAGATAGTATTGTATTTGTTTTATCTGAAAAGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CGACC-ATC--A-----AC--C--CC----CCCTGA----AAACATCAA--ANTCAT-AAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACNTCAG-AGTAATTAA-AAA-ATCTNAAAACGAGTGAAA-TGGATAGCATTGGA--T-TTGTT----T-AC--GGTAAGTC--TTTATTTAGATAGGTTTGTGAGTTTGTTTCCATGGTAACG-A-CCAT-CAAACAT-ACC-CTTCCTGGAAACACCATA--ATTC----------AAAGCCTGTC-AAANNGAAGNATAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCTGAAAA-----TAA-TTGAAA--TATAT---AGC-ATATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAGA-ATA-GGTTC--G-T--GAGTTCGTTTCC--A-T-G-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--CA----T--G--TC-AAA-C--GG-AACCGT--AGGATT-GAC------ATAATAGC--A----TTT-AA----AAAAGT-CAAA-AA-T--GAGTAACATGGATAGCATNATATTTATTT---TAT--AGAAA-GGGTGA-T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GTA-A-CG-ATAATCAAAT--ATGTC-ATTGCCGAAGACGA----AA-TG-T-ATT-CAAAACC-TGTCAAAAGAGCAATTGAGG---GAC-TGACACCAAAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAA--G-TACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
Reference ( family-683 ) : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAA-TG--GGTAGCACTGG--A--T-TCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CA-AAGCGTGGGGNT--A-CA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-A--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATC-AA-ATTCAAAACCTGTC-A--AA-CGGAAGTACGAGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACT--TGAAA-TAGATAGTATTGTATTTGTTTTATCTGAAAAGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CGACC-ATC--A-----AC--C--CC----CCCTGA----AAACATCAA--ANTCAC-GAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACNTCAG-AGTAATTAA-AAA-ATCTNAAAACGAGTGAAA-TGNATAGCATTGGA--T-TTGTT----T-AC--GGTAAGTC--TTTATTTAGATAGGTTTGTGAGTTTGTTTCCATGGTAACG-A-CCAT-CAAACAT-A-C-CTTCCTGAAAACACCATA--ATTC----------AAAGCCTGTC-AAANNGAAGNACAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCT-AAAA-----TAA-TTGAAA--TATAT---AGN-ATATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAGA-ATA-GGTTC--G-T--GAGTTCGTTTCC--A-T-G-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--CA----T--G--TC-NAA-C--GG-AACCGT--AGGATT-GAC------ATAATAGC--A----TTT-NA----AAAAGT-CAAA-AA-T--GAGTAACATGGATAGCATNATATTTATTT---TAT--AGAAA-GGGTGA-T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GTA-A-CG-ATAATCAAAT--ATGTC-ATTGCCGAAGACGA----AA-TG-T-ATT-CAAAACC-TGTCAAAAGAGNAATTGAGG---GAC-TGACACCAAAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAA--G-TACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
gi|1 : TGTATGGGACTCAG-AT--CAGAGTAAATAAAAA-AATGCTCTGAAAATGAGTGAAA-TG--GGTAGCACTGG--A--T-TTG--TTTTGACAGAAATGG-ATA-----TTTTTT-GATA---GGTAAATGAGTTCGTTTCCA-T-GGTAACCGACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CA-AAGCGTAGAAAT--A-CA-TCA--AG--AGTAATAAAAAATATCTTAAA-TG-ACT--GAAA-TACG--T-A--AATGAT--ACTTAATTTATCAGAAAATAATCATTTTT-AGAAAGGTTTGCAGGTTCGTTCCC--GGTAACGATCACCAAACACGCGCTT----GATAGAGAC---AT--AA-ATTCAAAACCTGTC-A--AA-CGGAAGTACAA-ACTGATTGGAGAGTAAATTAAA--AAAATCT-AAAAA-ACT--TGAAA-TAGATTGTATTGTATTTGTTTTATCTGAAAAGGGCA--T-TTTTTAGATAGGTTGATGAGTTCGTTTCCATGGTA--CGACC-ATC--A-----AC--C--CC----CCCTAA----AAACATCAA--ATTCA---AAG-------CCTGTCAAAAGGGAAA-TATGTGACTGACCCTGG-AATAATTAA-TCA-ATCAAAAAAC-AGTGAAT-TGTAAAGCATTGAA--T-TTATT----T-AC--AGTAAGTC--TTTATTTAAATAAGTTTGTGAGTTTGTTTCCATGGTAACG-G-CCAT-CAA-TAT-A-C-CTTCCTAAAAACACCATA--ATTC----------AAAGCCTGTC-AAAAAGAAGTATAA-ATTGG--TATGGGAGTATCTAAAAAAT--TCT-AAAA-----TAA-TTGAAA--TCTAT----GC-ATATC-ATTCGTT--------TT--AG--------------CA-TAAAAAG-GA----TT-TTTTAAACATA-GGTTC--G-T--GAGTTCGTTTCC--A-TTG-GTA-CGAACGC-TAA--------AC--ATACCCATGCTG--GATACATCAT-AAT-CACTGAGATTGGC--CA----TATG--TC-TAA-C--GG-AACCGT--AGGATT-GAC------ATAATAGC--A----TTT-CA----AAATGT-CAAA-AA-T--GAGTAACA-GGATAGCATAATATTTATTT---TCT--AGAAA-GGGTG--T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GTA-A-CG-ATAATCAAAT--ATGTCAATTGCCG-AGACGA----AA-TG-T-ATTACAAAACC-TGTCAAAA-AGAAATCGAGC---GAC-TGACACCAGAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG----AGTAGGATA-GAATATTAT----TTTGTTTTAGC-AG---AAAG--G-TTCTTTT-T-A-GTTACAT-GTA--GG-TCGTTT--CACAGTAACA-ATAAT-GATAAA-A-AAAAGGC---TTGCTGAAA-A-CGTC-------------------AT----------A-CC-G-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTAAGGA-AAAAAAACCACAGTTCGGGTGTTT-A---ATAGCTA-ACGCAGC---AAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACTCTAGCTCAGATGGAATA
gi|12 : GCTGAAAGA-CGTC-------------------ATTCCTC-AGAAA-CCTG-TCAAAAAA-GAAA--TGCCAACTCTCGTA--C-ACCGCCTCCCTCCCCCCCCCCC-CCCTTGT--------------GGCCCTGAA--------AATTTGAAGA-AAAAA---CACAGTTCGGGTGTT------ATAGCTATAC-CAGC-AAAAATATTGAG-CAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAC-CTAGCTCAGACGGAATA
gi|13 : ttgTATTGGACTCAGCACTCCAGAGTA--TAAAATTGTC--TCTGAAAATGAGTGAAA-TGTCGGTAGCACTGG--A--T-TTT--TTTTGACAGAAATGGAACA-----TTTTTT-GAT----GGTGCGTGAGTTCG-TTCCA-TAGGTAAC-GACC-ATCAAAC-ATACCCTACTCTGGAAACACCATAATTCACTGAAATTGACCAC-CT----T-CTCAA---A-AAGCCGGGGGTC--A-CA-TCAGCAG--ATTAATAAattatatgaataacccctcgt
gi|15 : tGTAGTTCAAAA-ATT---CTAAAAATGAGAGAAA-TA--AATAGCATTGT--A--T-TCA--TTTTAACGGAATTTG--CA-----TTTTGTAGGTA---GATTCGTGAGTTCGTTCCCA-T-GTTAAC-GAAA-ATCAAAC-ATACCCTTC-CTGGAGACAT--GGATTCTCTGAAATT
gi|16 : aaggatgcgtgaggctgacaataaagttactTAGTACCGGGTA--T-TCA--TTTTCATGGAAAAGG-GCA-----TTTCT--AACATTTGGTTCATGAGTTCATTTCCA-T-GGTAAC-AAAC-ATCAAACTATAACCTTG-CTGG----------ATTCATTGAAATTGACCATGCATTTGT-CTAAAA-TG-AAGTGTGGGACT--AGTA-T-A--AG--AGCA
gi|17 : AAAC-ATACCCTAC-CTGGAAATGACATAATCCACTGAAATTGA------------------------AGTGTGAGGTTC-A-CA-T-A--AG--AATAATAAAAAAAAACTTTATATG-TCT--GAAA--AGGGTT-A--AAAGAT--ACCTAATTTAT---AAAAAGAATAAGATT-AGAAAGGTTCACGGGTTCGTTTCCAt
gi|18 : AGAGTAATTAAAAAAT--TCT-AAAAAAAAATAA-TTGAAA--TATAT---AGA-ATAGC-ATTCGTT--------TC--AA--------------CG-GAAAAAG-GATTTTTT-TTTTAG--ATA-AGTTC--G-T--GAGTTCGTTTCC--A-T-G-GTAA
gi|19 : cTGTATGGGACTCAG-AT--CAGAGTAATTAAAAC--TT--TCTGAAAATGAGTGAAA-TG--GGTAGCACTGG--A--T-TTG--TTTTGACAGAAATGG-ACATCTATTTTTTT-GATA---AGTTC
gi|2 : GGATGTATGGGACTTCAATCAGAGTAA-TTAAA--ATTTTCT-AAAAATGAG--TGAAAATGGGTAG-ACTGGATTTGTTTTGACAGAAATGGACA--TATTTTTA--TAGGTTCGTGAGTTCGTTTCCATGGTAA-CAACCCATA--A-----ACATC--CT----CCCTGG----AAACA-CAATAATTCACTGAAATTGACCTCCTCTCAAACA--AAG-CGTGGGGTTCACATCAGTAGTAATAAA-ATATATCTTAAAATGACTAAAA-T----AG-------------GTT----A-AT--G-TAA-----TTT-TTTAGATAGGTTTGC-AGGTTGTTTCCATGGTAACG-ATCCA--CAAAAAC-G-CGCTTGATGGGGACATCA-A--ATTTAATAAAAAAAAAAACC-GTC-AAATCGAAGAACAAGACTGA--TGTCAGAGTAATT-AAAAAT--TCTAAAAA-----TAC-TTAAAA--TAGAT---AGT-ATGGT-ATTTGTT--------TT--AT--------------TC-TGAAAAG-GC----AT-TTTTAAA-ATA-GGTTA--A-T--GAGTTTGTTTCC--A-T-G-GT-ACGAACGC-CAA--------AC--ATAACCTTGCTG--GAGACATCAT-AATTTACTGAGATTGGCCACA----T--G--TCTAAA-C--GG-AACCGT--AGGATT-GAT------ATAATAGCA-A----TTT-TA----AAAAGT--AAA-AA-T--GA-TAACATGGATAGCATAATATTTATTT---TATC-AAAAA-GGGTGA-T-TTTCAGCTAG-TTTTGT-----GAGCTCGTT-TCCAT--GTAGA-CG-ATAATC-AAT--ATGTC-ATTGCCGAAGACGA----AA-TG-T-ATT-CAAAACC-TGTC-AAAGAGCA--TGAGG---GAC-TGACACCAAAAG-AA--AAAA-AA---------TCTGAA--AATT--GAGG-CG---AAATA-GATA-GAAT-TTA-----TTTGTTTTAGC--G---AAAA--GATACTTTT-TAA-GTTACAT-GTA--GGATCGTTT-CCACG--AACA-ATAA-----AAA-A-AAAAAAC---TTGCTG-AA-A-CGTC-------------------GTTCCTCAA--AA-CCTG-TCAAAAA---AAG--TG-CAACCCTCTAAGTC-C--------------CCCCCAC-CCCCTGT--------------G--CCTGAA--------AATTTGA-GA-AAAAA---CA-AGTTCGGATTTTTAA---ATAGTTATACGCAGCAAAAAATATTGAGANNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC-CTA-CTCAGACGGA
gi|20 : AGACTGATTTCAAAGTAA-T-AAA--AATATCTTGAAAATACT--GGAAA-TATATAGTATTGTATTTGTTTTATATGAAAA------------------AGGTTAATGAGTTCGTTTCCATGGTtatgaataacccctcgttcaacagaaattatactttgcggtattatcacatgaatatttctacagaataataaatactgtacagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagtctcagacatttttctctgtcacatacatgtgtaataaaaacaaatccaaca
gi|21 : acaataGAAA-TAGATAGTATTGTATTTGTTTTTTCAGAAAAAGGCA--T-TTTTTAGATTGGTTTATGTGTTCATTTCCATGGTAA-TGACC-ATC--AAACATAC--C--TA----TCCTGA----A
gi|22 : A-TAGG--TTA--AATGAT--ACTTAATTTATCAAATAATGATCATTTTT-AGATAGATTTTCAGGTTTGTTTCCATGGTAACGATCCCCAAAAACGCGCTT----GATGG
gi|24 : atTGTATGAAACTGAC-AT--CAGAGTAATTAAAAA-ATT---CTGAAAATGAGTGAAA-TG--GATAGCACTGA--A--T-TTATTTTTTAACAGAAATTG-ACA-----TTTT
gi|26 : aggaGAAGA----AA-TA-T-ATT-CAAAACC-TGTCAAAAGAGCATTT--GT---GAC-TGACACCAAAAG-AATAAAAA-AA---------TCTAAA--
gi|27 : --GG-AACCGT--AGGATT-GAC------AAAATAGCA-A----TTTAAA----AAAAGA-CAAA-AA-T--GAATAAAATGG
gi|3 : TTTCAAGAAAATGA-TCA-----TTTTAA-GATA---GGTTTGCAGGTTCGTTTCAAAT-GGTAAA-GATCGACCAAAA-ATAGCGTTG-ATGGAGACAC------TCA---AAGTTCAACAC-C-----TGTTCAAAACGGAAGTACAAGACTTGA-TAGTCAG-AGTCAGTAA-AAAAAAT-TCCAAAAATGCGTT--GAAAATGGGA-T-AGTAATAATGTATTTGTTTTATCTGAAAGGG--CATTTTTTAGATAGGTTAGTGAGTTCGTTTCAATGGTAACGACCATCAACCCCCCCCCCCCCAAAAAAAAACCCCATC-AA-AATCAAAGTCTGTC-AGAAA-GGGAAATATGGGACTGACCCTAGA--AA-TTAATTTCAAATCA-AAAAAAACGAGTGAAA-TTGATAGCATTGAATT-----TAT------AG--------TTTTGAG------------GTTCTTTCCCATGGTAAACGATC-AACGAA-----AC--A--ACATAGCTTTGAGTGGAGACATCAA--AATTAT-AAAAA------CCTGCCAAAACAGAAGCTATAGG-CTGAATTCAG-AGCAATTAA-AAA-AAATTACAATAATTGAAA-TAG-TAGTATTGTA--T-TTGTT----TTATCTGGAAAGGCATTTTTTTTTTAT-GGTTCGTGAGTTTGTTTCCATGGTAACG-G-CCATATAAATAT-ACC-CTTCCTAAAAACACCATGATATTC----------AAAGCCTGTC-AAAGGGAAGT-TAAAATTGGTATGTGAGAGTAATTTAAAAAA--TCTGAAAA-----TAA-TTGGAAATTATGT---AGC-ATATCTATTCGTT--------TTAAAA--------------CA-TAAAAAG-AAAGAGTT-ATTTAG--ATATTGTTCAGA-TAGAAGTTCGTTTCCGAG-T-GCGCCACGATAGCGCAATAGGCGCTAT--ATTTCCTTGCTGATGA-ACATCATGAATTCACTGAGATGGGC--CAC---T--GTCTC-AAA-C---G-AACCGT--AGGATTGGAT------ATAATAGC--AAATTTTT-AA----AAAAGT-CAAATAA-TTGAAGTAACAT-GATAGCA--ATA-TTATTT---TAT--CAGAC-GGGTGGTT-TTTCAGCTAGTTTTAGT-----GAGTTCGTTATCCATG-GTA-A-CGCATAATCAAATA-ATGTC-ATTGCCGAACGCGA----AATTG-TCATT-TAAAACCTTGTCAAAAGAGC---TAAGG---GACTTGACACCAAAAGAAAT-AAAACAAAAGAAATTCTTTAAACCAA-TCAGA-G-CG---GAATA--ACA-GAAT-TT-T----TTTGTTCT-GCGAG---AAGA--G-TACTTTT-T-AGGTTACAC-GCACGGAATCGTTTCCCACGA-AACA-ATAAT-AA
gi|4 : ataAAAAAG-GC----AT-TTTTA-A-ATA-GGTTA--A-T--GAGTTTGTT-CC--A-T-G-GTAACGACCAT-CAA---------C--ACACCCT-------AAAACATCAA-AATTC-C--AAA---GC--C-----T--G--TC-AAA-AAAGGTAAATAT--ACGACT-GACCCTAGAATAAT--C--A----ATC-AA----A----T-CAAA-AAAC--GAGTGAAATTGTTAGCATTGAATTTATTTGAGTAC--AGCAA-GTCTA-----TTAAAATAATTT--GT-----GAGTTCGTT-TCAATG-GTA-AACG-ATA-TCAAAT--ATGTC-ATTGCCGAAGACGA----AAATA-T-ATT-CAAAAC--TGTCAAAAGAGGCATTT-GG---AAC-TGACACCAAAAG-AAT-AAAA-AAA--------TCTAAA--AA-T--GA-G-CG---AAATA-GGTA-GAAT-TTTC----ATTGTTC--GC-AG---AAAAAAG-TACTTTTAT-A-TTGACATCGTA--GATTCGTTT-CCACGGT---A-ATAAT-AATAAA-ATAAAAAAC---TTGCTGAAA-A-CGT---------------------TTCCTCAA--AA-TCTG-T-AAAAAC-GAAG--TG-CAACCCTCTAT--C-C--------------CCCCTTT-CCCTTGT--------------T--CCTGAA--------AATTTGA-GA-AAAAA---CACAGTTCGAGTGTTT-A---ATAGTTTTACACAGC-AAAAATATTGAG-CAA------aa
gi|5 : tctgaTAATTTAAAGATAATCT-AAAAAT---TAAGTTGAAT--TTTATCTTAGCGATATC-ATTCGTTATTTTAAATT--AAAAACATCAAACAAACA-GAAAAGGAGA----TT-TATTAGA-ATA-GGATC--ACT--GAGTTCGTTTCA--ACT-G-GTAAAGAG--------------------TAATTTTGCTG--AGAACAT--T-GATTCACTGAGATTGGC--CAACTTT--G--TC-TAA-T--GG-AAC-GT--GAGATT-GGA------ATGTTAGCGAA----TTT-TATTGAAAAAGT-CAAA-AA-TT-GAGTACC-TGGATCGCATGA-AT--ATTT---TATTCAGAAATGGGTGA-TGTTTCAGCT-GTTGTTGTTTTTAGAGTT-GTT-TTCATGCGTC-A-AG-ATAATGAAATCTATGTC-ATTGCC-AGGACGACCTGAA-TGGT-ATT-CAAA----TGT--AAAGAAGCATTGAGG---GA--TGACAC----AG-GG-----A-AA---------T----A--AA-T--GA-GGCGGAGAACTA-AATATG--T-TTATATTTTTTGTTTTAGC-AGTAGAAAA--G-TACTTTT-T-T-GATACCT-GTAG-GGATCATTT--CATGGTGATACATA---GATAAATA-AAAGAACCGGTTGCAGAAA-AGCTTCAATAGGACCATTAGTGGATATTCCCG-A--AA-CCTGATCAAAAACAGAAAGTTG-AAACACGCTTA--CGA--------------CGCCTCCAACCTTGTCTTTTTTTTTTTGCG--CTTGAATCTAAAGCAATGAGAAGAGAAAAA---AACATTTCGGGTGTTT-GTTCAT-GTTATACGCAGacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|6 : TGAGTTTGTTTCCA-T-GATAAC-GACC-ATAAACC-ATTCCCTAC-CTACAAACATCATAATTCACTGAAATTGAGCAC-C-----T-CTCAAA-CA-AAGCATAGGGTTC-A-CA-TC---AG--AGTAAT-AAAAATATCTTAGAATG-ACT--GAAA-TAGGT-T-A--AATGAT--ACTTAATTTATCAGAAAACGATTATTTTT-AGATAGGTTTGCAGGTTCGTTTCCAAAGTAACGATCTCCAAACGCGTGCTT----GATGGAGAC---ATCAAA-ATTCAAAACCTGTCAA--AA-CGGATGTGCAAGACTGATGTCAGAGTAA-TTAAA--AAAATTT-AAAAATACT--TGAAA-TAGATAGTATTGTATTTGTTTTATCTGAAATAGGCATCT-TTTTTAGATAGGTTAATGAGTTTGTTTCCATAGTAA-CGA-C-ATC--A-----AA--CAACC----CCCT-A----AAACATCAA--AATC-T-AAAG-------CCTGTCAAAAGGAAAA-TATGGGACTGACCCTAG-AATGATTAATCAA-ATCAACAAACGAGTGAAA-TTGATAGCATTGGC--T-TTATTTGAGT-AC--AGTAAGTC--TTTATTTAGATAAATTTGTGAGTTTGTTTCCATGGTGACG-A-CCAT-CAAACAT-ACC-CTTCATGGAAACATCATA--ATTC----------AAAATCTGTCTTAACAGAAGAATAAGACTGA--TGC-AAAGTAATTAAAATAT--TATGAAAA-----TAC-TTAAAA--TAgccaatattcgccgcgtaatcttgtgtatgaactcgttgcgtttattatctccagtgaacgaggagttatttcattcattcgggtttgtaggctgtctttctacacgcatcagacgaatatgaataacccatgtttcaccgaaattattttgcggtatttatcactgacatttaacagaagtaat
gi|7 : tttatcggtaaaTGG--TGTGAGAGTAATT-AAAAAT--TCTAAAAA-----TGA-TTCAAA--TATAT---AGA-ACATC-ATTCGTT--------TT--AA--------------CATAAAAAAG-GA----TTCTTTTAAAGATA-GTTTA--A-T--GGGTTCGCTTCC--A-T-G-GTAACGAACGC-CAA--------ACATATACCCTTGCTG--GAGAGATCAT-AATTCACTGAGATTGGC--C
gi|7 : tAGCTAGTTTT-GT-----GAGTTCGTT-TCCATG-GTA-A-AG-ATAATTAAAT--ATGGC-ATTGCCGAAGACGA----AA-TG-T-ATT-CAAAACC-TGTCAAAAGAGCA--TGAGGGACGAC-TGACACC------------AA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-AAAT-TTTA----TTTGTTTTATC-AAC--AAAA--G-TACTTTT-T-AGGTTAGAT-GTA--GGATCGTTT-CCACGAAAAAA-ATAATAAATAAT-A-AAATAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-AG-AA-TCTG-TCAAAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgtgagttcgtttccatggtaaagataattaaatatggcattgccgaagacgaaatgtattcaaaacctgtcaaaagagcatgagggacgactgacaccaaaatctaaaaatgagcgaaatagataaaattttatttgttttatcaacaaaagtactttttaggttagatgtaggatcgtttccacgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|8 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTATGGGACTCA--AT--CAGAGTAATTAAAA---TG--TCTGAAAATGAGTGAAAATG--GGTAGCACTGG--AAGTATTG--TTT--ACAGAAATGG-ACA-----TTTT---AATA---G-TATGTGAGTTCGTTTCCA-T--GTAACGGACC-ATCAAAC-ATAACCTAC-CT-GAAACACCA-AATTTACTGAAAATGACCAC-C-----T-CTCA
gi|8 : ggataaaG-TATGGGACTCA-ATCAG-AGTAATTAA-AAT-GTCTGAAAATGAGTGAAAATGGGTAGCACTGGAAGTATTGTT----T-AC--AG-AAATG--GACATTTTAATAG-TATGTGAGTTCGTTTCCATG-TAACGGA-CCAT-CAAACATAA-C-CTACCTG-AAACACCA-A--ATTT----------A----CTG---AAAATG-ACCAC----CTCT--CAT-------CTTAAATGAC--TTG-AAAA-----TAG-TTAAAT--TACTT---AAT-TTATC-A--------------------------------------GAAAAG-GA----TT-ATTTAG--ATA-G--TT--G-C--AGGTTCG-TTCC--A-T---GTAACGATCAC-CAA--------AA--ACGCGCTTGATG--GAGACATCAA-GATTCA---AAACT-----------T--G--TC-AAAGC--GG-AA--GTTCAAGACT-GAT------GTCAGAGT--A----ATT-AA----TAAAATGTAAA-AA-T--ACCTGAAATAGATAGTATTGTAATTGTTT---TAtcttaaatgacttgaaaatagttaaattacttaatttatcagaaaaggattatttagatagttgcaggttcgttccatgtaacgatcaccaaaaacgcgcttgatggagacatcaagattcaaaacttgtcaaagcggaagttcaagactgatgtcagagtaattaataaaatgtaaaaatacctgaaatagatagtattgtaattgtttta
gi|8 : ggataaatATCTTAAA-TG-ACTTGAAAA-TAGT--T-A--AAT--T--ACTTAATTTATCAGAAAAGGATTATTT---AGATAG--TTGCAGGTTCGTT-CCATG-TAACGATCACCAAAAACGCGCTT----GATGGAGAC---ATC-AAGATTCAAAACTTGTC-A--AAGCGGAAGTTCAAGACTGATGTCAGAGTAA-TTAAT--AAAATGT-AAAAATACC--TGAAA-TAGATAGTATTGTAATTGTTTTA
gi|9 : ggataaatgtatgggactcaatcagagtaattaaaatgtctgaaaatgagtgaaaatgggtagcactggaagtattgtttacagaaatggacattttaatagtatgtgagttcgtttccatgtaacggaccatcaaacataacctacctgaaacaccaaatttactgaaaatgaccacctctcCTGAAA-A-CGCC-------------------ATTCCTC-A--AAACCTG-TCAAAG-C-GAAG--TG-CAACCCTCTAA--C-A--------------CT--TGC-CCCGTAT--------------G--CCTGAA--------AATTTCAG-A-AAAAA---TACAGTCCGGGTGTTT-A---ATAGCTATACGCAGG-AAAAATATTGAG-CAA------
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAAATCCCTCGTTTCCAAAGAAATTATACTTTGCGCTATTTAGCACTGTACAATATTTTTACAGAAATAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTTGGCATGCAGATTTCGGACATTCAGCGTCATTTTCCCTGTCACAAACATGTGTAATGAAAATCCAAGACAAATTTAAGTGACAAGCGC
Unaligned ( gi|11 ): TACTTTGCGGTATTTATCACTGAATATTTCTACAAAAATAATAATACTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCCGGCCTGTAAATTTCGGAAATTCTGCATGATTTTCCGCTGTCACATACATGTGTAATAAATAAAAAATCCAACACAATTTAGTGGCAAACGCAACGTTACACGATGT
Unaligned ( gi|14 ): ACACGTATCGCCTTACTGCCGAAAATAAACCGTTCTGGAAAATCAAGTCCGGCATGTAGATTCGTACATGTTCCTGCCTGTGACTTTTTCCCTGTCACATACATGTGTAATAAAAACAAATTCCCACCACAAATTGAAAGGGCTCTAAAGTGGCAAGCGCAACGTACAACCGAGATGTT
Unaligned ( gi|23 ): AGATTTCAGACATTTCCCTGTCACATACATGTATAATAAATACAAATTTAAGCGGCAAGAGCAACGTGCACGATGCTCTCTCTCTCTCTCTCTCTCTCT
Unaligned ( gi|25 ): ACCTCTCATATCCACAGAAATGATACTTTGCGGTATTTATCACTGAATATCGTTACAGAAATAATAAATTCTATACA
Alignments
lowQualScore : 11 11 22222222 11111 111 111 1 1111 2222222 2222 11 1 11 2222222 1111 111 111 11 2 111 1 1111 11 4444444444444444444444444 1111 11 55555555555555 11111111 11 1111 1 44444444444444444444444444444 11111 11 1111 3333333333 1111 111 4444444444444444444444444444 2222 222 11111 2222222222222222 3333333333333333 111111 333333 11111 11 111 11 2222 11111 11 1111 22 111 11 222222222 1111 222222 222 111 11 11 111 111 4444444444444444444 1111 4444444444444444 44444444444444444 22222222 1 111 11111 8888888888888888888888888888888888888888888888888888888888888888888888 1
lowQualScore : 33 11 1 99999999 6 99 77 77 5 9999 3 77 22222 666 000 1 5 5 1 5 5 0 5 2222 4 5 0000000 2222 3 88 6 6 6 55 99 0 3 0 0 8 11 6 0000000 1 99 1 6 1 0 1 1 1 7777 777 2 111 33 0 1 44 5 77 22 5 1 111 0 0 0000 3 888 6666 33 88888 0 3 6 6 6 2222222222222222222222222 1 4444 0 3 11 1 00000000000000 3 66666666 5 3 5 1 3 8 1 11 8888 22 3 99999999999999999999999999999 1 99999 6 0 3 3 0 8 11 77 5 4444 5555555555 0 8 22 8 77 3 99 6 3 66 6 0000 66 1 66 000 77 5 5 0000000000000000000000000000 77 5 4444 5 000 5 55555 77 0 77 5 5 5 1 33 6666666666666666 1 99 7 6 99 0000000000000000 6 1 6 999999 222222 77777 6 6 55 1 2 44 6 11 444 99 8 5555 7 3 66666 6 6 888 6 55 6 5 2222 5 5 5 5 0 5 5 44 6 000 5 1 5 99 5 222222222 77 6 99 6 6 3333 77 6 6 888888 3 6 777 6 6 555 6 55 3 33 222 1 6 99 8 8 444 5 5 4444444444444444444 9999 5 5 99 99 6 99 4444444444444444 1 6 22222222222222222 44444444 2 6 111 55555 1 88 8 7777777777777777777777777777777777777777777777777777777777777777777777 0 3 6
lowQualScore : .. .. . ........ . .. .. .. . .... . .. ..... ... ... . . . . . . . . .... . . ....... .... . .. . . . .. .. . . . . . .. . ....... . .. . . . . . . . .... ... . ... .. . . .. . .. .. . . ... . . .... . ... .... .. ..... . . . . . ......................... . .... . . .. . .............. . ........ . . . . . . . .. .... .. . ............................. . ..... . . . . . . .. .. . .... .......... . . .. . .. . .. . . .. . .... .. . .. ... .. . . ............................ .. . .... . ... . ..... .. . .. . . . . .. ................ . .. . . .. ................ . . . ...... ...... ..... . . .. . . .. . .. ... .. . .... . . ..... . . ... . .. . . .... . . . . . . . .. . ... . . . .. . ......... .. . .. . . .... .. . . ...... . . ... . . ... . .. . .. ... . . .. . . ... . . ................... .... . . .. .. . .. ................ . . ................. ........ . . ... ..... . .. . ...................................................................... . . .
lowQualScore : 00 00 7 22222222 7 22 99 99 7 7777 4 22 55555 000 000 9 7 7 4 7 0 8 0 0000 3 7 1111111 2222 7 55 7 7 7 88 22 8 2 8 6 0 00 7 3333333 0 22 0 7 0 7 7 0 0 0000 555 5 000 88 0 4 99 7 99 33 7 7 333 0 9 6666 2 000 3333 66 44444 7 0 7 7 7 7777777777777777777777777 0 2222 8 8 00 0 00000000000000 8 44444444 0 8 0 0 8 0 4 00 0000 44 2 66666666666666666666666666666 4 66666 0 8 2 2 8 0 88 22 0 0000 0000000000 8 0 00 0 00 2 22 7 6 99 2 6666 99 9 99 000 44 7 7 7777777777777777777777777777 77 7 3333 7 444 7 77777 99 1 99 7 7 7 4 55 8888888888888888 0 22 8 7 22 2222222222222222 7 0 7 222222 777777 77777 7 7 88 0 5 66 0 66 000 00 0 4444 3 5 77777 7 7 333 7 88 7 7 1111 7 7 7 7 7 7 7 11 6 000 7 4 7 99 7 999999999 99 7 22 7 7 3333 77 7 7 000000 2 7 555 7 7 333 7 88 5 33 888 0 7 88 0 0 000 7 7 3333333333333333333 4444 7 7 22 22 7 22 8888888888888888 0 7 55555555555555555 22222222 0 7 777 88888 0 88 0 0000000000000000000000000000000000000000000000000000000000000000000000 7 3 7
consensus : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAA-TG--GGTAGCACTGG--A--T-TCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGCGGGG-NTCACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-A--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATCAA-A-TTCAAAACCTGTCA--AAGCGGAAGTACGGGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACN--TGAAA-TAGATAGTATTG----TATTTGTTTTATCNGAAANGGGCAT--TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-A-CCATC--A-----AC--C----CC----C-CCTGA----AAACATCA--AATTCA-TAAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACCTCAG-AGTAAT--TAA-A-AAATCTNAAAACGAGTGAAATAGATAGCATTGAATTTATTT----AC--GGTAAGNC--TTTATTTAGATAGGTTTGCGAGTTTGTTTCCATGGTAACGA-CCAT-CAAANACGCCCTTCATGGAAACATCATA--ATTC----------AAAACCTGTC-AAANNG-AAGTATAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCTAAAAA----T--ANTTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAGA-ATA-GGTTC--G-T--GAGTTCGTTTCC--A-T-G-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--CA----T--G--TC--AAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATAATATTTATTT---TAT--AGAAA-GGGTGA-T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCA-TTGAGG---GAC-TGACACCAAAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
Reference ( family-683 ) : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAA-TG--GGTAGCACTGG--A--T-TCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGTGGGG-TTCACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-A--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATCAA-A-TTCAAAACCTGTCA--AA-CGGAAGTACGAGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACT--TGAAA-TAGATAGTATTG----TATTTGTTTTATCTGAAAAGGGCAT--TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-A-CCATC--A-----AC--C----CC----C-CCTGA----AAACATCA--AANTCA-TAAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACNTCAG-AGTAAT--TAA-A-AAATCTNAAAACGAGTGAAATGGATAGCATTGGATTTGTTT----AC--GGTAAGTC--TTTATTTAGATAGGTTTGTGAGTTTGTTTCCATGGTAACGA-CCAT-CAAACATACCCTTCCTGGAAACACCATA--ATTC----------AAAGCCTGTC-AAANNG-AAGNATAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCTGAAAA----T--AATTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAGA-ATA-GGTTC--G-T--GAGTTCGTTTCC--A-T-G-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--CA----T--G--TC--AAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATNATATTTATTT---TAT--AGAAA-GGGTGA-T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCAATTGAGG---GAC-TGACACCAAAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
gi|1 : TGTATGGGACTCAG-AT--CAGAGTAAATAAAAA-AATGCTCTGAAAATGAGTGAAA-TG--GGTAGCACTGG--A--T-TTG--TTTTGACAGAAATGG-ATA-----TTTTTT-GATA---GGTAAATGAGTTCGTTTCCA-T-GGTAACCGACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CA-AAGCGTAGAA-AT-ACA-TCA--AG--AGTAATAAAAAATATCTTAAA-TG-ACT--GAAA-TACG--T-A--AATGAT--ACTTAATTTATCAGAAAATAATCATTTTT-AGAAAGGTTTGCAGGTTCGTTCCC--GGTAACGATCACCAAACACGCGCTT----GATAGAGAC---AT-AA-A-TTCAAAACCTGTCA--AA-CGGAAGTACAA-ACTGATTGGAGAGTAAATTAAA--AAAATCT-AAAAA-ACT--TGAAA-TAGATTGTATTG----TATTTGTTTTATCTGAAAAGGGCAT--TTTTTAGATAGGTTGATGAGTTCGTTTCCATGGTA--CG-A-CCATC--A-----AC--C----CC----C-CCTAA----AAACATCA--AATTCA---AAG-------CCTGTCAAAAGGGAAA-TATGTGACTGACCCTGG-AATAAT--TAA-T-CAATCAAAAAAC-AGTGAATTGTAAAGCATTGAATTTATTT----AC--AGTAAGTC--TTTATTTAAATAAGTTTGTGAGTTTGTTTCCATGGTAACGG-CCAT-CAA-TATACC-TTCCTAAAAACACCATA--ATTC----------AAAGCCTGTC-AAAAAG-AAGTATAA-ATTGG--TATGGGAGTATCTAAAAAAT--TCT-AAAA----T--AATTGAAA--TCTAT----GC-A-TATC-ATTCGTT--------TT--AG--------------CA-TAAAAAG-GA----TT-TTTTAAACATA-GGTTC--G-T--GAGTTCGTTTCC--A-TTG-GTA-CGAACGC-TAA--------AC--ATACCCATGCTG--GATACATCAT-AAT-CACTGAGATTGGC--CA----TATG--TC--TAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-C---AAAATGTC-AAA-AAT--GAGTAACA-GGATAGCATAATATTTATTT---TCT--AGAAA-GGGTG--T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTCAATTGCCG-AGACG-A----AA-TG-T-ATTACAAAACC-TGTCAAAA-A-GAAATCGAGC---GAC-TGACACCAGAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG----AGTAGGATA-GAATATTAT----TTTGTTTTAGC-AG---AAAGG-TTCTTTT-T-A-GTTACAT-GTA--GG-TCGTTT--CACAGTAACA-ATAAT-GATAAA-A-AAAAGGC---TTGCTGAAA-A-CGTC-------------------AT----------A-CC-G-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTAAGGA-AAAAAAACCACAGTTCGGGTGTTT-A---ATAGCTA-ACGCAGC---AAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACTCTAGCTCAGATGGAATA
gi|12 : GCTGAAAGA-CGTC-------------------ATTCCTC-AGAAA-CCTG-TCAAAAAA-GAAA--TGCCAACTCTCGTA--C-ACCGCCTCCCTCCCCCCCCCCC-CCCTTGT--------------GGCCCTGAA--------AATTTGAAGA-AAAAA---CACAGTTCGGGTGTT------ATAGCTATAC-CAGC-AAAAATATTGAG-CAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAC-CTAGCTCAGACGGAATA
gi|13 : ttgTATTGGACTCAGCACTCCAGAGTA--TAAAATTGTC--TCTGAAAATGAGTGAAA-TGTCGGTAGCACTGG--A--T-TTT--TTTTGACAGAAATGGAACA-----TTTTTT-GAT----GGTGCGTGAGTTCG-TTCCA-TAGGTAAC-GACC-ATCAAAC-ATACCCTACTCTGGAAACACCATAATTCACTGAAATTGACCAC-CT----T-CTCAAA----AAGC-CGGGG-GTCACA-TCAGCAG--ATTAATAAattatatgaataacccctcgt
gi|15 : tGTAGTTCAAAA-ATT---CTAAAAATGAGAGAAA-TA--AATAGCATTGT--A--T-TCA--TTTTAACGGAATTTG--CA-----TTTTGTAGGTA---GATTCGTGAGTTCGTTCCCA-T-GTTAAC-GAAA-ATCAAAC-ATACCCTTC-CTGGAGACAT--GGATTCTCTGAAATT
gi|16 : aaggatgcgtgaggctgacaataaagttactTAGTACCGGGTA--T-TCA--TTTTCATGGAAAAGG-GCA-----TTTCT--AACATTTGGTTCATGAGTTCATTTCCA-T-GGTAAC-AAAC-ATCAAACTATAACCTTG-CTGG----------ATTCATTGAAATTGACCATGCATTTGT-CTAAAA-TG-AAGTGTGGGA-CTAGTA-T-A--AG--AGCA
gi|17 : AAAC-ATACCCTAC-CTGGAAATGACATAATCCACTGAAATTGA------------------------AGTGTGAGG-TTCACA-T-A--AG--AATAATAAAAAAAAACTTTATATG-TCT--GAAA--AGGGTT-A--AAAGAT--ACCTAATTTAT---AAAAAGAATAAGATT-AGAAAGGTTCACGGGTTCGTTTCCAt
gi|18 : AGAGTAATTAAAAAAT--TCTAAAAAAAAAT--AATTGAAA--TATAT---AGA-A-TAGC-ATTCGTT--------TC--AA--------------CG-GAAAAAG-GATTTTTT-TTTTAG--ATA-AGTTC--G-T--GAGTTCGTTTCC--A-T-G-GTAA
gi|19 : cTGTATGGGACTCAG-AT--CAGAGTAATTAAAAC--TT--TCTGAAAATGAGTGAAA-TG--GGTAGCACTGG--A--T-TTG--TTTTGACAGAAATGG-ACATCTATTTTTTT-GATA---AGTTC
gi|2 : GGATGTATGGGACTTCAATCAGAGTAA-TTAAA--ATTTTCT-AAAAATGAG--TGAAAATGGGTAG-ACTG----GATTTGTTTTGACAGAAATGGACATA-TTTTTA--TAGGTTCGTGAGTTCGTTTCCATGGTAA-CA-ACCCATA--A-----ACATC----CT----C-CCTGG----AAACA-CAATAATTCACTGAAATTGACCTCCTCTCAAA--CAAAG-CGTGGGGTTCACATCAGTAGTAAT--AAA-ATATATCTTAAAATGACTAAAATAG--------------GTTA----AT---GTAA-----TTT-TTTAGATAGGTTTGC-AGGTTGTTTCCATGGTAACGATCCA--CAAAAACGCGCTTGATGGGGACATCA-A--ATTTAATAAAAAAAAAAACC-GTC-AAATCG-AAGAACAAGACTGA--TGTCAGAGTAATT-AAAAAT--TCTAAAAA----T--ACTTAAAA--TAGAT---AGT-A-TGGT-ATTTGTT--------TT--AT--------------TC-TGAAAAG-GC----AT-TTTTAAA-ATA-GGTTA--A-T--GAGTTTGTTTCC--A-T-G-GT-ACGAACGC-CAA--------AC--ATAACCTTGCTG--GAGACATCAT-AATTTACTGAGATTGGCCACA----T--G--TCT-AAACGG-AACCGTAGGATT-GAT------ATAATAGCAA----TTT-T---AAAAAGT--AAA-AAT--GA-TAACATGGATAGCATAATATTTATTT---TATC-AAAAA-GGGTGA-T-TTTCAGCTAG-TTTTGT-----GAGCTCGTT-TCCAT--GT-AGACG-ATAATC-AAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTC-AAAGA-GCA--TGAGG---GAC-TGACACCAAAAG-AA--AAAA-AA---------TCTGAA--AATT--GAGG-CG---AAATA-GATA-GAAT-TTA-----TTTGTTTTAGC--G---AAAAGATACTTTT-TAA-GTTACAT-GTA--GGATCGTTT-CCACG--AACA-ATAA-----AAA-A-AAAAAAC---TTGCTG-AA-A-CGTC-------------------GTTCCTCAA--AA-CCTG-TCAAAAA---AAG--TG-CAACCCTCTAAGTC-C--------------CCCCCAC-CCCCTGT--------------G--CCTGAA--------AATTTGA-GA-AAAAA---CA-AGTTCGGATTTTTAA---ATAGTTATACGCAGCAAAAAATATTGAGANNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC-CTA-CTCAGACGGA
gi|20 : AGACTGATTTCAAAGTAA-T-AAA--AATATCTTGAAAATACT--GGAAA-TATATAGTATTG----TATTTGTTTTATATGAAAA-----------------AGGTTAATGAGTTCGTTTCCATGGTtatgaataacccctcgttcaacagaaattatactttgcggtattatcacatgaatatttctacagaataataaatactgtacagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagtctcagacatttttctctgtcacatacatgtgtaataaaaacaaatccaaca
gi|21 : acaataGAAA-TAGATAGTATTG----TATTTGTTTTTTCAGAAAAAGGCAT--TTTTTAGATTGGTTTATGTGTTCATTTCCATGGTAA-TG-A-CCATC--AAACATAC--C----TA----T-CCTGA----A
gi|22 : A-TAGG--TTA--AATGAT--ACTTAATTTATCAAATAATGATCATTTTT-AGATAGATTTTCAGGTTTGTTTCCATGGTAACGATCCCCAAAAACGCGCTT----GATGG
gi|24 : atTGTATGAAACTGAC-AT--CAGAGTAATTAAAAA-ATT---CTGAAAATGAGTGAAA-TG--GATAGCACTGA--A--T-TTATTTTTTAACAGAAATTG-ACA-----TTTT
gi|26 : aggaGAAG-A----AA-TA-T-ATT-CAAAACC-TGTCAAAAGA-GCATTT--GT---GAC-TGACACCAAAAG-AATAAAAA-AA---------TCTAAA--
gi|27 : GG-AACCGTAGGATT-GAC------AAAATAGCAA----TTTAA---AAAAAGAC-AAA-AAT--GAATAAAATGG
gi|3 : TTTCAAGAAAATGA-TCA-----TTTTAA-GATA---GGTTTGCAGGTTCGTTTCAAAT-GGTAAA-GATCGACCAAAA-ATAGCGTTG-ATGGAGACAC------TCA---AAGTTCAACAC-C-----TGTTCAAAACGGAAGTACAAGACTTGATAGTCAG-AGTCAGTAA-AAAAAAT-TCCAAAAATGCGTT--GAAAATGGGA-T-AGTAATAATGTATTTGTTTTATCTGAAAGGG--CATTTTTTAGATAGGTTAGTGAGTTCGTTTCAATGGTAACGACCATCAACCCCCCCCCCCCCAAAAAAAAACCCCATCAA-A-ATCAAAGTCTGTCAGAAA-GGGAAATATGGGACTGACCCTAGA--AA-TTAATTTCAAATCA-AAAAAAACGAGTGAAA-TTGATAGCATTG----AATT-----TAT------AG-------TTTTGAG------------GTTCTTTCCCATGGTAAACG-A-TCAACGAA-----AC--A----ACATAGC-TTTGAGTGGAGACATCA--AAATTA-TAAAAA------CCTGCCAAAACAGAAGCTATAGG-CTGAATTCAG-AGCAAT--TAA-A-AAAAATTACAATAATTGAAATAG-TAGTATTGTATTTGTTTT---ATCTGGAAAGGCATTTTTTTTTTAT-GGTTCGTGAGTTTGTTTCCATGGTAACGG-CCATATAAATATACCCTTCCTAAAAACACCATGATATTC----------AAAGCCTGTC-AAAGGG-AAGT-TAAAATTGGTATGTGAGAGTAATTTAAAAAA--TCTGAAAA----T--AATTGGAAATTATGT---AGC-A-TATCTATTCGTT--------TTAAAA--------------CA-TAAAAAG-AAAGAGTT-ATTTAG--ATATTGTTCAGA-TAGAAGTTCGTTTCCGAG-T-GCGCCACGATAGCGCAATAGGCGCTAT--ATTTCCTTGCTGATGA-ACATCATGAATTCACTGAGATGGGC--CAC---T--GTCTC--AAAC-G-AACCGTAGGATTGGAT------ATAATAGC-AAATTTTT-A---AAAAAGTC-AAATAATTGAAGTAACAT-GATAGCA--ATA-TTATTT---TAT--CAGAC-GGGTGGTT-TTTCAGCTAGTTTTAGT-----GAGTTCGTTATCCATG-GT-A-ACGCATAATCAAATA-ATGTC-ATTGCCGAACGCG-A----AATTG-TCATT-TAAAACCTTGTCAAAAGA-GC---TAAGG---GACTTGACACCAAAAGAAAT-AAAACAAAAGAAATTCTTTAAACCAA-TCAGA-G-CG---GAATA--ACA-GAAT-TT-T----TTTGTTCT-GCGAG---AAGAG-TACTTTT-T-AGGTTACAC-GCACGGAATCGTTTCCCACGA-AACA-ATAAT-AA
gi|4 : ataAAAAAG-GC----AT-TTTTA-A-ATA-GGTTA--A-T--GAGTTTG-TTCC--A-T-G-GTAACGACCAT-C-A--------AC--ACACCCT-------AAAACATCAA-AATTC-C--AAA---GC--C-----T--G--TCAAAAAAGGTAAATATACGACT-GACCCTAGAATAAT--C-A----ATC-A---AA----TCAAAA-AAC--GAGTGAAATTGTTAGCATTGAATTTATTTGAGTAC--AGCAA-GTCTA-----TTAAAATAA--TTTGT-----GAGTTCGTT-TCAATG-GTAA-ACG-AT-ATCAAAT--ATGTC-ATTGCCGAAGACGAA----AA-TA-T-ATT-CAAAA-C-TGTCAAAAGAGGCATTT--GG---AAC-TGACACCAAAAG-AATAAAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GGTA-GAAT-TTTC----ATTGTTC--GC-AGAA-AAAAG-TACTTTTAT-A-TTGACATCGTA--GATTCGTTT-CCACGGT---A-ATAAT-AATAAA-ATAAAAAAC---TTGCTGAAA-A-CGT---------------------TTCCTCAA--AA-TCTG-T-AAAAAC-GAAG--TG-CAACCCTCTAT--C-C--------------CCCCTTT-CCCTTGT--------------T--CCTGAA--------AATTTGA-GA-AAAAA---CACAGTTCGAGTGTTT-A---ATAGTTTTACACAGC-AAAAATATTGAG-CAA------aa
gi|5 : tctgaTAATTTAAAGATAATCTAAAAA----TTAAGTTGAAT--TTTATCTTAGCGA-TATC-ATTCGTTATTTTAAATT--AAAAACATCAAACAAACA-GAAAAGGAGA----TT-TATTAGA-ATA-GGATC--ACT--GAGTTCGTTTCA--ACT-G-GTAAAGAG--------------------TAATTTTGCTG--AGAACAT--T-GATTCACTGAGATTGGC--CAACTTT--G--TC--TAATGG-AAC-GTGAGATT-GGA------ATGTTAGC-GAAT-TTT-ATTGAAAAAGTC-AAA-AATT-GAGTACC-TGGATCGCATGA-AT--ATTT---TATTCAGAAATGGGTGA-TGTTTCAGCT-GTTGTTGTTTTTAGAGTT-GTT-TTCATGCGT-C-AAG-ATAATGAAATCTATGTC-ATTGCC-AGGACG-ACCTGAA-TGGT-ATT-CAAA----TGT-AAAGAA-GCA-TTGAGG---GA--TGACAC----AG-GG-----A-AA---------T----A--AA-T--GA-GGCGGAGAACTA-AATATG--T-TTATATTTTTTGTTTTAGC-AGTAGAAAAG-TACTTTT-T-T-GATACCT-GTAG-GGATCATTT--CATGGTGATACATA---GATAAATA-AAAGAACCGGTTGCAGAAA-AGCTTCAATAGGACCATTAGTGGATATTCCCG-A--AA-CCTGATCAAAAACAGAAAGTTG-AAACACGCTTA--CGA--------------CGCCTCCAACCTTGTCTTTTTTTTTTTGCG--CTTGAATCTAAAGCAATGAGAAGAGAAAAA---AACATTTCGGGTGTTT-GTTCAT-GTTATACGCAGacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|6 : TGAGTTTGTTTCCA-T-GATAAC-GACC-ATAAACC-ATTCCCTAC-CTACAAACATCATAATTCACTGAAATTGAGCAC-C-----T-CTCAAA-CA-AAGCATAGGG-TTCACA-TCA---G--AGTAATAAAAA-TATCTTAGAATG-ACT--GAAA-TAGG--TTA--AATGAT--ACTTAATTTATCAGAAAACGATTATTTTT-AGATAGGTTTGCAGGTTCGTTTCCAAAGTAACGATCTCCAAACGCGTGCTT----GATGGAGAC---ATCAA-AATTCAAAACCTGTCA--AAACGGATGTGCAAGACTGATGTCAGAGTAA-TTAAA--AAAATTT-AAAAATACT--TGAAA-TAGATAGTATTG----TATTTGTTTTATCTGAAATAGGCATCTTTTTTAGATAGGTTAATGAGTTTGTTTCCATAGTAA-CG-A-C-ATC--A-----AA--CAA--CC----C-CCT-A----AAACATCA--AAATC--TAAAG-------CCTGTCAAAAGGAAAA-TATGGGACTGACCCTAG-AATGAT--TAATC-AAATCAACAAACGAGTGAAATTGATAGCATTGGCTTTATTTGAGTAC--AGTAAGTC--TTTATTTAGATAAATTTGTGAGTTTGTTTCCATGGTGACGA-CCAT-CAAACATACCCTTCATGGAAACATCATA--ATTC----------AAAATCTGTCTTAACAG-AAGAATAAGACTGA--TGC-AAAGTAATTAAAATAT--TATGAAAA----T--ACTTAAAA--TAgccaatattcgccgcgtaatcttgtgtatgaactcgttgcgtttattatctccagtgaacgaggagttatttcattcattcgggtttgtaggctgtctttctacacgcatcagacgaatatgaataacccatgtttcaccgaaattattttgcggtatttatcactgacatttaacagaagtaat
gi|7 : tttatcggtaaaTGG--TGTGAGAGTAATTAAAAA-T--TCTAAAAA----T--GATTCAAA--TATAT---AGA-A-CATC-ATTCGTT--------TT--AA--------------CATAAAAAAG-GA----TTCTTTTAAAGATA-GTTTA--A-T--GGGTTCGCTTCC--A-T-G-GTAACGAACGC-CAA--------ACATATACCCTTGCTG--GAGAGATCAT-AATTCACTGAGATTGGC--C
gi|7 : tAGCTAGTTTT-GT-----GAGTTCGTT-TCCATG-GT-A-AAG-ATAATTAAAT--ATGGC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCA--TGAGGGACGAC-TGACACC------------AA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-AAAT-TTTA----TTTGTTTTATC-AAC--AAAAG-TACTTTT-T-AGGTTAGAT-GTA--GGATCGTTT-CCACGAAAAAA-ATAATAAATAAT-A-AAATAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-AG-AA-TCTG-TCAAAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgtgagttcgtttccatggtaaagataattaaatatggcattgccgaagacgaaatgtattcaaaacctgtcaaaagagcatgagggacgactgacaccaaaatctaaaaatgagcgaaatagataaaattttatttgttttatcaacaaaagtactttttaggttagatgtaggatcgtttccacgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|8 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTATGGGACTCA--AT--CAGAGTAATTAAAA---TG--TCTGAAAATGAGTGAAAATG--GGTAGCACTGG--AAGTATTG--TTT--ACAGAAATGG-ACA-----TTTT---AATA---G-TATGTGAGTTCGTTTCCA-T--GTAACGGACC-ATCAAAC-ATAACCTAC-CT-GAAACACCA-AATTTACTGAAAATGACCAC-C-----T-CTCA
gi|8 : ggataaaGTATGGGACTCA-ATCAGAGTAA-TTAAA--ATG-TCT-GAAAATGAG--TGAAAATGGGTAGCACTGGAAGTATT-GTTT-A-CAGAAATGGACAT--TTT---AATAG-TATGTGAGTTCGTTTCCATG-TAA-CGGA-CCATC--A-----AA--CATAACC----TACCTGA----AA-CACCA--AATTTA--------------CTG---AAA--------ATG--ACC-ACCTC-----TCATCTTAA-A-TGACTTGAAAAT-AGTTAAAT------TACTTAATTTAT-------C--AGAAAAGG--ATTATTTAGATAG--TTGCAGGTTCGTT-CCATG-TAACGA-TCAC-CAAAAACGCGCTTGATGGAGACATCAAG--ATTC----------AAAACTTGTC-AAAGCGGAAGTTCAAGACTGA--TGTCAGAGTAATTAATAAAA--TGTAAAAA----T--ACCTGAAA--TAGAT---AGT-ATTGTA-ATT-GTT--------TT--Atcttaaatgacttgaaaatagttaaattacttaatttatcagaaaaggattatttagatagttgcaggttcgttccatgtaacgatcaccaaaaacgcgcttgatggagacatcaagattcaaaacttgtcaaagcggaagttcaagactgatgtcagagtaattaataaaatgtaaaaatacctgaaatagatagtattgtaattgtttta
gi|8 : ggataaatATCTTAAA-TG-ACTTGAAAA-TAGT--T-A--AAT--T--ACTTAATTTATCAGAAAAGGATTATTT---AGATAG--TTGCAGGTTCGTT-CCATG-TAACGATCACCAAAAACGCGCTT----GATGGAGAC---ATCAAGA-TTCAAAACTTGTCA--AAGCGGAAGTTCAAGACTGATGTCAGAGTAA-TTAAT--AAAATGT-AAAAATACC--TGAAA-TAGATAGTATTG----TAATTGTTTTA
gi|9 : ggataaatgtatgggactcaatcagagtaattaaaatgtctgaaaatgagtgaaaatgggtagcactggaagtattgtttacagaaatggacattttaatagtatgtgagttcgtttccatgtaacggaccatcaaacataacctacctgaaacaccaaatttactgaaaatgaccacctctcCTGAAA-A-CGCC-------------------ATTCCTC-A--AAACCTG-TCAAAG-C-GAAG--TG-CAACCCTCTAA--C-A--------------CT--TGC-CCCGTAT--------------G--CCTGAA--------AATTTCAG-A-AAAAA---TACAGTCCGGGTGTTT-A---ATAGCTATACGCAGG-AAAAATATTGAG-CAA------
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAAATCCCTCGTTTCCAAAGAAATTATACTTTGCGCTATTTAGCACTGTACAATATTTTTACAGAAATAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTTGGCATGCAGATTTCGGACATTCAGCGTCATTTTCCCTGTCACAAACATGTGTAATGAAAATCCAAGACAAATTTAAGTGACAAGCGC
Unaligned ( gi|11 ): TACTTTGCGGTATTTATCACTGAATATTTCTACAAAAATAATAATACTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCCGGCCTGTAAATTTCGGAAATTCTGCATGATTTTCCGCTGTCACATACATGTGTAATAAATAAAAAATCCAACACAATTTAGTGGCAAACGCAACGTTACACGATGT
Unaligned ( gi|14 ): ACACGTATCGCCTTACTGCCGAAAATAAACCGTTCTGGAAAATCAAGTCCGGCATGTAGATTCGTACATGTTCCTGCCTGTGACTTTTTCCCTGTCACATACATGTGTAATAAAAACAAATTCCCACCACAAATTGAAAGGGCTCTAAAGTGGCAAGCGCAACGTACAACCGAGATGTT
Unaligned ( gi|23 ): AGATTTCAGACATTTCCCTGTCACATACATGTATAATAAATACAAATTTAAGCGGCAAGAGCAACGTGCACGATGCTCTCTCTCTCTCTCTCTCTCTCT
Unaligned ( gi|25 ): ACCTCTCATATCCACAGAAATGATACTTTGCGGTATTTATCACTGAATATCGTTACAGAAATAATAAATTCTATACA
Alignments
lowQualScore : 1 11 22222222 11 1111 11111 11 111 1111 222222222 2222 11 11 1 11 2222222 1111 111 111 11 1111 1111 4444444444444444444444444 1111 11 55555555555555 11111111 11 1111 1 2222222 444444444444 11111 11 1111 3333333333 1111 111 4444444444444444444444444444 2222 222 11111 1111 2222222222222222 3333333 11 222 111111 333333 11111 11 111 11 2222 11111 11 1111 111 11 222222222 1111 222222 222 111 11 11 111 111 4444444444444444444 1111 4444444444444444 44444444444444444 22222222 1 111 11111 8888888888888888888888888888888888888888888888888888888888888888888888 1
lowQualScore : 0 33 44 44444444 11 99 2222 1 99 44444 00 111 6 6 6 1 6 5 2 5 2222 6 555555555 2222 44 1 11 6 6 55 99 0 3 0 0 8 11 6 0000000 1 99 1 6 1 0 1 1 1 7777 777 2 111 33 99 1 44 5 77 22 5 1 888 5 5 0 0000 0 555 88 1 1111 88888 0 3 6 6 77 2222222222222222222222222 1 4444 0 3 11 1 00000000000000 3 66666666 5 3 5 3 8 1 11 8888 22 3 5555555 0 0 555555555555 1 88888 6 0 3 3 0 8 11 8 1 77 0 4444 5555555555 0 8 22 8 77 3 99 6 3 2 66 0 0000 66 1 66 000 77 5 5 0000000000000000000000000000 77 5 4444 5 000 5 55555 77 0 2222 5 8 33 6666666666666666 1 99 7 6 99 5555555 11 000 6 1 6 999999 222222 77777 6 6 55 1 2 0 6 11 444 99 8 5555 7 3 66666 6 6 888 6 55 6 5 2222 5 5 5 5 0 5 5 8 5 000 5 1 5 99 5 222222222 77 6 99 6 6 3333 77 6 6 888888 3 6 777 6 6 555 6 55 3 33 222 1 6 99 8 8 444 5 5 4444444444444444444 9999 5 5 99 99 6 99 4444444444444444 1 6 22222222222222222 44444444 2 6 111 55555 1 88 8 7777777777777777777777777777777777777777777777777777777777777777777777 0 3 6
lowQualScore : . .. .. ........ .. .. .... . .. ..... .. ... . . . . . . . . .... . ......... .... .. . .. . . .. .. . . . . . .. . ....... . .. . . . . . . . .... ... . ... .. .. . .. . .. .. . . ... . . . .... . ... .. . .... ..... . . . . .. ......................... . .... . . .. . .............. . ........ . . . . . . .. .... .. . ....... . . ............ . ..... . . . . . . .. . . .. . .... .......... . . .. . .. . .. . . . .. . .... .. . .. ... .. . . ............................ .. . .... . ... . ..... .. . .... . . .. ................ . .. . . .. ....... .. ... . . . ...... ...... ..... . . .. . . . . .. ... .. . .... . . ..... . . ... . .. . . .... . . . . . . . . . ... . . . .. . ......... .. . .. . . .... .. . . ...... . . ... . . ... . .. . .. ... . . .. . . ... . . ................... .... . . .. .. . .. ................ . . ................. ........ . . ... ..... . .. . ...................................................................... . . .
lowQualScore : 0 88 88 66666666 00 22 0000 7 66 33333 22 777 7 7 7 0 7 7 1 7 1111 7 888888888 2222 33 0 88 7 7 88 22 8 2 8 6 0 00 7 3333333 0 22 0 7 0 7 7 0 0 0000 555 5 000 88 00 4 99 7 99 33 7 7 999 0 0 9 6666 1 444 33 7 4444 44444 7 0 7 7 77 7777777777777777777777777 0 2222 8 8 00 4 00000000000000 8 44444444 0 8 0 8 0 4 00 0000 44 2 6666666 8 8 666666666666 4 00000 0 8 2 2 8 0 88 0 0 88 6 0000 0000000000 8 0 00 0 44 2 22 7 6 2 99 9 6666 99 0 99 000 44 7 7 7777777777777777777777777777 77 7 3333 7 444 7 77777 99 1 4444 7 4 55 8888888888888888 0 22 8 7 22 0000000 00 444 7 0 7 222222 777777 77777 7 7 88 0 5 8 0 66 000 00 0 4444 3 5 77777 7 7 333 7 88 7 7 1111 7 7 7 7 7 7 7 4 0 000 7 4 7 99 7 999999999 99 7 22 7 7 3333 77 7 7 000000 2 7 555 7 7 333 7 88 5 33 888 0 7 88 0 0 000 7 7 3333333333333333333 4444 7 7 22 22 7 22 8888888888888888 0 7 55555555555555555 22222222 0 7 777 88888 0 88 0 0000000000000000000000000000000000000000000000000000000000000000000000 7 3 7
consensus : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTNC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGCGGGGNTC-ACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-A--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATCAA-A-TTCAAAACCTGTCA--AAGCGGAAGTACGGGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACN--TG-AAA-TAGATAGTATTG----TATTTGTTTTATCNGAAANGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-A-CCATC--A-----AC--C----CC----C-CCTGA----AAACATCA--AATTCA-TAAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACCTCAG-AGTAAT--TAA-A-AAATCTNAAAACGAGTGAAATAGATAGCATTGAATTTATT----T-AC--GGTAAGNC--TTTATTTAGATAGGTTTGCGAGTTTGTTTCCATGGTAACGA-CCAT-CAA-ANACGCCCTTCATGGAAACATCATA--ATTC----------AAAACCTGTC-AAANNG-AAGTATAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCTAAAAA----T--ANTTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAGA-ATA-GGTTC--G-T--GAGTTCGTTTCC--A-TG-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--C--A----TG--TC--AAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATAATATTTATTT---TAT--AGAAA-GGGTGA-T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCATTGAGG---GAC-TGACACCAAAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
Reference ( family-683 ) : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGCGGGGNTC-ACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-A--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATCAA-A-TTCAAAACCTGTCA--AAGCGGAAGTACGGGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACN--TG-AAA-TAGATAGTATTG----TATTTGTTTTATCNGAAANGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-A-CCATC--A-----AC--C----CC----C-CCTGA----AAACATCA--AATTCA-TAAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACCTCAG-AGTAAT--TAA-A-AAATCTNAAAACGAGTGAAATAGATAGCATTGAATTTATT----T-AC--GGTAAGNC--TTTATTTAGATAGGTTTGCGAGTTTGTTTCCATGGTAACGA-CCAT-CAA-ANACGCCCTTCATGGAAACATCATA--ATTC----------AAAACCTGTC-AAANNG-AAGTATAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCTAAAAA----T--ANTTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAGA-ATA-GGTTC--G-T--GAGTTCGTTTCC--A-TG-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--C--A----TG--TC--AAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATAATATTTATTT---TAT--AGAAA-GGGTGA-T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCATTGAGG---GAC-TGACACCAAAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
gi|1 : TGTATGGGACTCAG-AT--CAGAGTAAATAAAAA-AATGCTCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTTG--TTTTGACAGAAATGG-ATA-----TTTTTT-GATA---GGTAAATGAGTTCGTTTCCA-T-GGTAACCGACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CA-AAGCGTAGAAAT--ACA-TCA--AG--AGTAATAAAAAATATCTTAAA-TG-ACT--GAAA-TACG--T-A--AATGAT--ACTTAATTTATCAGAAAATAATCATTTTT-AGAAAGGTTTGCAGGTTCGTTCCC--GGTAACGATCACCAAACACGCGCTT----GATAGAGAC---AT-AA-A-TTCAAAACCTGTCA--AA-CGGAAGTACAA-ACTGATTGGAGAGTAAATTAAA--AAAATCT-AAAAA-ACT--TG-AAA-TAGATTGTATTG----TATTTGTTTTATCTGAAAAGGGCA--T-TTTTTAGATAGGTTGATGAGTTCGTTTCCATGGT-A-CG-A-CCATC--A-----AC--C----CC----C-CCTAA----AAACATCA--AATTC---AAAG-------CCTGTCAAAAGGGAAA-TATGTGACTGACCCTGG-AATAAT--TAA-T-CAATCAAAAAAC-AGTGAATTGTAAAGCATTGAATTTATT----T-AC--AGTAAGTC--TTTATTTAAATAAGTTTGTGAGTTTGTTTCCATGGTAACGG-CCAT-CAATATA---CCTTCCTAAAAACACCATA--ATTC----------AAAGCCTGTC-AAAAAG-AAGTATAA-ATTGG--TATGGGAGTATCTAAAAAAT--TCT-AAAA----T--AATTGAAA--TCTAT----GC-A-TATC-ATTCGTT--------TT--AG--------------CA-TAAAAAG-GA----TT-TTTTAAACATA-GGTTC--G-T--GAGTTCGTTTCC--ATTG-GT-ACGAACGC-TAA--------AC--ATACCCATGCTG--GATACATCAT-AA-TCACTGAGATTGGC--CATA----TG--TC--TAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-C---AAAATGTC-AAA-AAT--GAGTAACA-GGATAGCATAATATTTATTT---TCT--AGAAA-GGGTG--T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTCAATTGCCG-AGACG-A----AA-TG-T-ATTACAAAACC-TGTCAAAAAG-AAATCGAGC---GAC-TGACACCAGAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG----AGTAGGATA-GAATATTAT----TTTGTTTTAGC-AG---AAAGG-TTCTTTT-T-A-GTTACAT-GTA--GG-TCGTTT--CACAGTAACA-ATAAT-GATAAA-A-AAAAGGC---TTGCTGAAA-A-CGTC-------------------AT----------A-CC-G-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTAAGGA-AAAAAAACCACAGTTCGGGTGTTT-A---ATAGCTA-ACGCAGC---AAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACTCTAGCTCAGATGGAATA
gi|12 : GCTGAAAGA-CGTC-------------------ATTCCTC-AGAAA-CCTG-TCAAAAAA-GAAA--TGCCAACTCTCGTA--C-ACCGCCTCCCTCCCCCCCCCCC-CCCTTGT--------------GGCCCTGAA--------AATTTGAAGA-AAAAA---CACAGTTCGGGTGTT------ATAGCTATAC-CAGC-AAAAATATTGAG-CAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAC-CTAGCTCAGACGGAATA
gi|13 : ttgTATTGGACTCAGCACTCCAGAGTA--TAAAATTGTC--TCTGAAAATGAGTGAAATGTCGGTAGCACTGG--ATTTT--TTTTGACAGAAATGGAACA-----TTTTTT-GAT----GGTGCGTGAGTTCG-TTCCA-TAGGTAAC-GACC-ATCAAAC-ATACCCTACTCTGGAAACACCATAATTCACTGAAATTGACCAC-CT----T-CTCAAA----AAGC-CGGGGGTC-ACA-TCAGCAG--ATTAATAAattatatgaataacccctcgt
gi|15 : tGTAGTTCAAAA-ATT---CTAAAAATGAGAGAAATA--AATAGCATTGT--ATTCA--TTTTAACGGAATTTG--CA-----TTTTGTAGGTA---GATTCGTGAGTTCGTTCCCA-T-GTTAAC-GAAA-ATCAAAC-ATACCCTTC-CTGGAGACAT--GGATTCTCTGAAATT
gi|16 : aaggatgcgtgaggctgacaataaagttactTAGTACCGGGTATTCA--TTTTCATGGAAAAGG-GCA-----TTTCT--AACATTTGGTTCATGAGTTCATTTCCA-T-GGTAAC-AAAC-ATCAAACTATAACCTTG-CTGG----------ATTCATTGAAATTGACCATGCATTTGT-CTAAAA-TG-AAGTGTGGGACTA-GTA-T-A--AG--AGCA
gi|17 : AAAC-ATACCCTAC-CTGGAAATGACATAATCCACTGAAATTGA------------------------AGTGTGAGGTTC-ACA-T-A--AG--AATAATAAAAAAAAACTTTATATG-TCT--GAAA--AGGGTT-A--AAAGAT--ACCTAATTTAT---AAAAAGAATAAGATT-AGAAAGGTTCACGGGTTCGTTTCCAt
gi|18 : AGAGTAATTAAAAAAT--TCTAAAAAAAAAT--AATTGAAA--TATAT---AGA-A-TAGC-ATTCGTT--------TC--AA--------------CG-GAAAAAG-GATTTTTT-TTTTAG--ATA-AGTTC--G-T--GAGTTCGTTTCC--A-TG-GTAA
gi|19 : cTGTATGGGACTCAG-AT--CAGAGTAATTAAAAC--TT--TCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTTG--TTTTGACAGAAATGG-ACATCTATTTTTTT-GATA---AGTTC
gi|2 : GGATGTATGGGACTTCAATCAGAGTAA-TTAAA--ATTTTCT-AAAAATGAG--TGAAAA-TGGGTAG-ACTG----GATTTGTTTTGACAGAAATGGACA--TATTTTT--ATAGGTTCGTGAGTTCGTTTCCATGGTAA-CA-ACCCATA--A-----ACATC----CT----C-CCTGG----AAACA-CAATAATTCACTGAAATTGACCTCCTCTCAAA--CAAAG-CGTGGGGTTCACATCAGTAGTAAT--AAA-ATATATCTTAAAATGACTAAAATAGGT----T--AAT----------------GTAA-----TTT-TTTAGATAGGTTTGC-AGGTTGTTTCCATGGTAACGATCCA--CAA-AAACGCGCTTGATGGGGACATCA-A--ATTTAATAAAAAAAAAAACC-GTC-AAATCG-AAGAACAAGACTGA--TGTCAGAGTAATT-AAAAAT--TCTAAAAA----T--ACTTAAAA--TAGAT---AGT-A-TGGT-ATTTGTT--------TT--AT--------------TC-TGAAAAG-GC----AT-TTTTAAA-ATA-GGTTA--A-T--GAGTTTGTTTCC--A-TG-GT-ACGAACGC-CAA--------AC--ATAACCTTGCTG--GAGACATCAT-AATTTACTGAGATTGGCCAC--A----TG--TCT-AAACGG-AACCGTAGGATT-GAT------ATAATAGCAA----TTT-T---AAAAAGT--AAA-AAT--GA-TAACATGGATAGCATAATATTTATTT---TATC-AAAAA-GGGTGA-T-TTTCAGCTAG-TTTTGT-----GAGCTCGTT-TCCAT--GT-AGACG-ATAATC-AAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTC-AAAGA-GCA-TGAGG---GAC-TGACACCAAAAG-AA--AAAA-AA---------TCTGAA--AATT--GAGG-CG---AAATA-GATA-GAAT-TTA-----TTTGTTTTAGC--G---AAAAGATACTTTT-TAA-GTTACAT-GTA--GGATCGTTT-CCACG--AACA-ATAA-----AAA-A-AAAAAAC---TTGCTG-AA-A-CGTC-------------------GTTCCTCAA--AA-CCTG-TCAAAAA---AAG--TG-CAACCCTCTAAGTC-C--------------CCCCCAC-CCCCTGT--------------G--CCTGAA--------AATTTGA-GA-AAAAA---CA-AGTTCGGATTTTTAA---ATAGTTATACGCAGCAAAAAATATTGAGANNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC-CTA-CTCAGACGGA
gi|20 : GACTGATTTCAAAGTAA-T-AAA--AATATCTTGAAAATACT--GG-AAA-TATATAGTATTG----TATTTGTTTTATATGAAAA------------------AGGTTAATGAGTTCGTTTCCATGGTtatgaataacccctcgttcaacagaaattatactttgcggtattatcacatgaatatttctacagaataataaatactgtacagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagtctcagacatttttctctgtcacatacatgtgtaataaaaacaaatccaaca
gi|21 : acaataaG-AAA-TAGATAGTATTG----TATTTGTTTTTTCAGAAAAAGGCA--T-TTTTTAGATTGGTTTATGTGTTCATTTCCATGGTAA-TG-A-CCATC--AAACATAC--C----TA----T-CCTGA----A
gi|22 : A-TAGG--TTA--AATGAT--ACTTAATTTATCAAATAATGATCATTTTT-AGATAGATTTTCAGGTTTGTTTCCATGGTAACGATCCCCAAAAACGCGCTT----GATGG
gi|24 : atTGTATGAAACTGAC-AT--CAGAGTAATTAAAAA-ATT---CTGAAAATGAGTGAAATG--GATAGCACTGA--ATTTATTTTTTAACAGAAATTG-ACA-----TTTT
gi|26 : aggaGAAG-A----AA-TA-T-ATT-CAAAACC-TGTCAAAAGA-GCATTT-GT---GAC-TGACACCAAAAG-AATAAAAA-AA---------TCTAAA--
gi|27 : GG-AACCGTAGGATT-GAC------AAAATAGCAA----TTTAA---AAAAAGAC-AAA-AAT--GAATAAAATGG
gi|3 : TTTCAAGAAAATGA-TCA-----TTTTAA-GATA---GGTTTGCAGGTTCGTTTCAAAT-GGTAAA-GATCGACCAAAA-ATAGCGTTG-ATGGAGACAC------TCA---AAGTTCAACAC-C-----TGTTCAAAACGGAAGTACAAGACTTGATAGTCAG-AGTCAGTAA-AAAAAAT-TCCAAAAATGCGTT--GAAAATGGGA-T-AGTAATAATGTATTTGTTTTATCTGAAAGGG--CATTTTTTAGATAGGTTAGTGAGTTCGTTTCAATGGTAACGACCATCAACCCCCCCCCCCCCAAAAAAAAACCCCATCAA-A-ATCAAAGTCTGTCAGAAAG-GGAAATATGGGACTGACCCTAGA--AA-TTAATTTCAAATCA-AAAAAAACGAGTG-AAA-TTGATAGCATTG----AAT-----TTAT-----------A--G-TTTTGAG------------GTTCTTTCCCATGGTAAACG-A-TCAACGAA-----AC--A----ACATAGC-TTTGAGTGGAGACATCA--AAATTA-TAAAAA------CCTGCCAAAACAGAAGCTATAGG-CTGAATTCAG-AGCAAT--TAA-A-AAAAATTACAATAATTGAAATAG-TAGTATTGTATTTGTT----TTATCTGGAAAGGCATTTTTTTTTTAT-GGTTCGTGAGTTTGTTTCCATGGTAACGG-CCATATAA-ATATACCCTTCCTAAAAACACCATGATATTC----------AAAGCCTGTC-AAAGGG-AAGT-TAAAATTGGTATGTGAGAGTAATTTAAAAAA--TCTGAAAA----T--AATTGGAAATTATGT---AGC-A-TATCTATTCGTT--------TTAAAA--------------CA-TAAAAAG-AAAGAGTT-ATTTAG--ATATTGTTCAGA-TAGAAGTTCGTTTCCGAG-TGCGCCACGATAGCGCAATAGGCGCTAT--ATTTCCTTGCTGATGA-ACATCATGAATTCACTGAGATGGGC--C--AC---TGTCTC--AAAC-G-AACCGTAGGATTGGAT------ATAATAGC-AAATTTTT-A---AAAAAGTC-AAATAATTGAAGTAACAT-GATAGC--AATA-TTATTT---TAT--CAGAC-GGGTGGTT-TTTCAGCTAGTTTTAGT-----GAGTTCGTTATCCATG-GT-A-ACGCATAATCAAATA-ATGTC-ATTGCCGAACGCG-A----AATTG-TCATT-TAAAACCTTGTCAAAAGA-GC--TAAGG---GACTTGACACCAAAAGAAAT-AAAACAAAAGAAATTCTTTAAACCAA-TCAGA-G-CG---GAATA--ACA-GAAT-TT-T----TTTGTTCT-GCGAG---AAGAG-TACTTTT-T-AGGTTACAC-GCACGGAATCGTTTCCCACGA-AACA-ATAAT-AA
gi|4 : ataAAAAAG-GC----AT-TTTTA-A-ATA-GGTTA--A-T--GAGTTTG-TTCC--A-TG-GTAACGACCAT-C-A--------AC--ACACCCT-------AAAACATCAA-AATTC-C--AAA---GC--C-------TG--TCAAAAAAGGTAAATATACGACT-GACCCTAGAATAAT--C-A----ATC-A---AA----TCAAAA-AAC--GAGTGAAATTGTTAGCATTGAATTTATTTGAGTAC--AGCAA-GTCTA-----TTAAAATAA--TTTGT-----GAGTTCGTT-TCAATG-GTAA-ACG-AT-ATCAAAT--ATGTC-ATTGCCGAAGACGAA----AA-TA-T-ATT-CAAAA-C-TGTCAAAAGAGGCATTT-GG---AAC-TGACACCAAAAG-AATAAAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GGTA-GAAT-TTTC----ATTGTTC--GC-AGAA-AAAAG-TACTTTTAT-A-TTGACATCGTA--GATTCGTTT-CCACGGT---A-ATAAT-AATAAA-ATAAAAAAC---TTGCTGAAA-A-CGT---------------------TTCCTCAA--AA-TCTG-T-AAAAAC-GAAG--TG-CAACCCTCTAT--C-C--------------CCCCTTT-CCCTTGT--------------T--CCTGAA--------AATTTGA-GA-AAAAA---CACAGTTCGAGTGTTT-A---ATAGTTTTACACAGC-AAAAATATTGAG-CAA------aa
gi|5 : tctgaTAATTTAAAGATAATCTAAAAA----TTAAGTTGAAT--TTTATCTTAGCGA-TATC-ATTCGTTATTTTAAATT--AAAAACATCAAACAAACA-GAAAAGGAGA----TT-TATTAGA-ATA-GGATC--ACT--GAGTTCGTTTCA--ACTG-GTAAAGAG--------------------TAATTTTGCTG--AGAACAT--T-GATTCACTGAGATTGGC--C--AACTTTG--TC--TAATGG-AAC-GTGAGATT-GGA------ATGTTAGC-GAAT-TTT-ATTGAAAAAGTC-AAA-AATT-GAGTACC-TGGATCGCATGA-AT--ATTT---TATTCAGAAATGGGTGA-TGTTTCAGCT-GTTGTTGTTTTTAGAGTT-GTT-TTCATGCGT-C-AAG-ATAATGAAATCTATGTC-ATTGCC-AGGACG-ACCTGAA-TGGT-ATT-CAAA----TGT-AAAGAA-GCATTGAGG---GA--TGACAC----AG-GG-----A-AA---------T----A--AA-T--GA-GGCGGAGAACTA-AATATG--T-TTATATTTTTTGTTTTAGC-AGTAGAAAAG-TACTTTT-T-T-GATACCT-GTAG-GGATCATTT--CATGGTGATACATA---GATAAATA-AAAGAACCGGTTGCAGAAA-AGCTTCAATAGGACCATTAGTGGATATTCCCG-A--AA-CCTGATCAAAAACAGAAAGTTG-AAACACGCTTA--CGA--------------CGCCTCCAACCTTGTCTTTTTTTTTTTGCG--CTTGAATCTAAAGCAATGAGAAGAGAAAAA---AACATTTCGGGTGTTT-GTTCAT-GTTATACGCAGacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|6 : TGAGTTTGTTTCCA-T-GATAAC-GACC-ATAAACC-ATTCCCTAC-CTACAAACATCATAATTCACTGAAATTGAGCAC-C-----T-CTCAAA-CA-AAGCATAGGGTTC-ACA-TCA---G--AGTAATAAAAA-TATCTTAGAATG-ACT--GAAA-TAGG--TTA--AATGAT--ACTTAATTTATCAGAAAACGATTATTTTT-AGATAGGTTTGCAGGTTCGTTTCCAAAGTAACGATCTCCAAACGCGTGCTT----GATGGAGAC---ATCAA-AATTCAAAACCTGTCA--AAACGGATGTGCAAGACTGATGTCAGAGTAA-TTAAA--AAAATTT-AAAAATACT--TG-AAA-TAGATAGTATTG----TATTTGTTTTATCTGAAATAGGCATCT-TTTTTAGATAGGTTAATGAGTTTGTTTCCATAGTAA-CG-A--CATC--A-----AA--CAA--CC----C-CCT-A----AAACATCA--AAATC--TAAAG-------CCTGTCAAAAGGAAAA-TATGGGACTGACCCTAG-AATGAT--TAATC-AAATCAACAAACGAGTGAAATTGATAGCATTGGCTTTATTTGAGT-AC--AGTAAGTC--TTTATTTAGATAAATTTGTGAGTTTGTTTCCATGGTGACGA-CCAT-CAA-ACATACCCTTCATGGAAACATCATA--ATTC----------AAAATCTGTCTTAACAG-AAGAATAAGACTGA--TGC-AAAGTAATTAAAATAT--TATGAAAA----T--ACTTAAAA--TAgccaatattcgccgcgtaatcttgtgtatgaactcgttgcgtttattatctccagtgaacgaggagttatttcattcattcgggtttgtaggctgtctttctacacgcatcagacgaatatgaataacccatgtttcaccgaaattattttgcggtatttatcactgacatttaacagaagtaat
gi|7 : tttatcggtaaaTGG--TGTGAGAGTAATTAAAA-AT--TCTAAAAA----T--GATTCAAA--TATAT---AGA-A-CATC-ATTCGTT--------TT--AA--------------CATAAAAAAG-GA----TTCTTTTAAAGATA-GTTTA--A-T--GGGTTCGCTTCC--A-TG-GTAACGAACGC-CAA--------ACATATACCCTTGCTG--GAGAGATCAT-AATTCACTGAGATTGGC--C--
gi|7 : tAGCTAGTTTT-GT-----GAGTTCGTT-TCCATG-GT-A-AAG-ATAATTAAAT--ATGGC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCA-TGAGGGACGAC-TGACACC------------AA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-AAAT-TTTA----TTTGTTTTATC-AAC--AAAAG-TACTTTT-T-AGGTTAGAT-GTA--GGATCGTTT-CCACGAAAAAA-ATAATAAATAAT-A-AAATAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-AG-AA-TCTG-TCAAAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgtgagttcgtttccatggtaaagataattaaatatggcattgccgaagacgaaatgtattcaaaacctgtcaaaagagcatgagggacgactgacaccaaaatctaaaaatgagcgaaatagataaaattttatttgttttatcaacaaaagtactttttaggttagatgtaggatcgtttccacgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|8 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTATGGGACTCA-ATCAGAGTAA-TTAAA--ATG-TCT-GAAAATGAG--TG-AAAATGGGTAGCACTGGAAGTATT-GTTT-A-CAGAAATGGACA--T-TTT---AATAG-TATGTGAGTTCGTTTCCATG-TAA-CGGA-CCATC--A-----AA--CATAACC----TACCTGA----AA-CACCA--AATTTA--------------CTG---AAA--------ATG--ACC-ACCTC-----TCATCTTAA-A-TGACTTGAAAAT-AGTTAAAT------TACTTAATTTAT--------C--AGAAAAGG--ATTATTTAGATAG--TTGCAGGTTCGTT-CCATG-TAACGA-TCAC-CAA-AAACGCGCTTGATGGAGACATCAAG--ATTC----------AAAACTTGTC-AAAGCGGAAGTTCAAGACTGA--TGTCAGAGTAATTAATAAAA--TGTAAAAA----T--ACCTGAAA--TAGAT---AGT-ATTGTA-ATT-GTT--------TT--A
gi|8 : ggataaatATCTTAAA-TG-ACTTGAAAA-TAGT--T-A--AAT--T--ACTTAATTTATCAGAAAAGGATTATTT---AGATAG--TTGCAGGTTCGTT-CCATG-TAACGATCACCAAAAACGCGCTT----GATGGAGAC---ATCAAGA-TTCAAAACTTGTCA--AAGCGGAAGTTCAAGACTGATGTCAGAGTAA-TTAAT--AAAATGT-AAAAATACC--TG-AAA-TAGATAGTATTG----TAATTGTTTTA
gi|9 : ggataaatgtatgggactcaatcagagtaattaaaatgtctgaaaatgagtgaaaatgggtagcactggaagtattgtttacagaaatggacattttaatagtatgtgagttcgtttccatgtaacggaccatcaaacataacctacctgaaacaccaaatttactgaaaatgaccacctctcCTGAAA-A-CGCC-------------------ATTCCTC-A--AAACCTG-TCAAAG-C-GAAG--TG-CAACCCTCTAA--C-A--------------CT--TGC-CCCGTAT--------------G--CCTGAA--------AATTTCAG-A-AAAAA---TACAGTCCGGGTGTTT-A---ATAGCTATACGCAGG-AAAAATATTGAG-CAA------
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAAATCCCTCGTTTCCAAAGAAATTATACTTTGCGCTATTTAGCACTGTACAATATTTTTACAGAAATAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTTGGCATGCAGATTTCGGACATTCAGCGTCATTTTCCCTGTCACAAACATGTGTAATGAAAATCCAAGACAAATTTAAGTGACAAGCGC
Unaligned ( gi|11 ): TACTTTGCGGTATTTATCACTGAATATTTCTACAAAAATAATAATACTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCCGGCCTGTAAATTTCGGAAATTCTGCATGATTTTCCGCTGTCACATACATGTGTAATAAATAAAAAATCCAACACAATTTAGTGGCAAACGCAACGTTACACGATGT
Unaligned ( gi|14 ): ACACGTATCGCCTTACTGCCGAAAATAAACCGTTCTGGAAAATCAAGTCCGGCATGTAGATTCGTACATGTTCCTGCCTGTGACTTTTTCCCTGTCACATACATGTGTAATAAAAACAAATTCCCACCACAAATTGAAAGGGCTCTAAAGTGGCAAGCGCAACGTACAACCGAGATGTT
Unaligned ( gi|23 ): AGATTTCAGACATTTCCCTGTCACATACATGTATAATAAATACAAATTTAAGCGGCAAGAGCAACGTGCACGATGCTCTCTCTCTCTCTCTCTCTCTCT
Unaligned ( gi|25 ): ACCTCTCATATCCACAGAAATGATACTTTGCGGTATTTATCACTGAATATCGTTACAGAAATAATAAATTCTATACA
Alignments
lowQualScore : 1 11 22222222 11 1111 11111 11 111 1111 222222222 2222 11 11 1 11 2222222 1111 111 111 11 1111 1111 4444444444444444444444444 1111 11 55555555555555 11111111 11 1111 1 2222222 444444444444 11111 11 1111 3333333333 111 1111 111 4444444444444444444444444444 2222 222 11111 1111 2222222222222222 3333333 11 222 111111 333333 11111 11 111 11 2222 11111 11 1111 111 11 222222222 1111 222222 222 111 11 11 111 111 4444444444444444444 1111 4444444444444444 44444444444444444 22222222 1 111 11111 8888888888888888888888888888888888888888888888888888888888888888888888 1
lowQualScore : 0 33 44 44444444 11 99 2222 1 99 44444 00 111 6 6 6 1 6 5 1 5 2222 6 555555555 2222 44 1 11 6 6 55 99 0 3 0 0 8 11 6 0000000 1 99 1 6 1 0 1 1 1 7777 777 2 111 33 99 1 44 5 77 22 5 1 888 5 5 0 0000 0 555 88 1 1111 88888 0 3 6 6 77 2222222222222222222222222 1 4444 0 3 11 1 00000000000000 3 66666666 5 3 5 3 8 1 11 8888 22 3 5555555 0 0 555555555555 1 88888 6 0 3 3 0 8 11 8 1 77 0 4444 5555555555 0 8 000 77 3 99 6 3 2 66 0 0000 66 1 66 000 77 5 5 0000000000000000000000000000 77 5 4444 5 000 5 55555 77 0 2222 5 8 33 6666666666666666 1 99 7 6 99 5555555 11 000 6 1 6 999999 222222 77777 6 6 55 1 2 0 6 11 444 99 8 5555 7 3 66666 6 6 888 6 55 6 5 2222 5 5 5 5 0 5 5 8 5 000 5 1 5 99 5 222222222 77 6 99 6 6 3333 77 6 6 888888 3 6 777 6 6 555 6 55 3 33 222 1 6 99 8 8 444 5 5 4444444444444444444 9999 5 5 99 99 6 99 4444444444444444 1 6 22222222222222222 44444444 2 6 111 55555 1 88 8 7777777777777777777777777777777777777777777777777777777777777777777777 0 3 6
lowQualScore : . .. .. ........ .. .. .... . .. ..... .. ... . . . . . . . . .... . ......... .... .. . .. . . .. .. . . . . . .. . ....... . .. . . . . . . . .... ... . ... .. .. . .. . .. .. . . ... . . . .... . ... .. . .... ..... . . . . .. ......................... . .... . . .. . .............. . ........ . . . . . . .. .... .. . ....... . . ............ . ..... . . . . . . .. . . .. . .... .......... . . ... .. . .. . . . .. . .... .. . .. ... .. . . ............................ .. . .... . ... . ..... .. . .... . . .. ................ . .. . . .. ....... .. ... . . . ...... ...... ..... . . .. . . . . .. ... .. . .... . . ..... . . ... . .. . . .... . . . . . . . . . ... . . . .. . ......... .. . .. . . .... .. . . ...... . . ... . . ... . .. . .. ... . . .. . . ... . . ................... .... . . .. .. . .. ................ . . ................. ........ . . ... ..... . .. . ...................................................................... . . .
lowQualScore : 0 88 88 66666666 00 22 0000 7 66 33333 22 777 7 7 7 0 7 7 0 7 1111 7 888888888 2222 33 0 88 7 7 88 22 8 2 8 6 0 00 7 3333333 0 22 0 7 0 7 7 0 0 0000 555 5 000 88 00 4 99 7 99 33 7 7 999 0 0 9 6666 1 444 33 7 4444 44444 7 0 7 7 77 7777777777777777777777777 0 2222 8 8 00 4 00000000000000 8 44444444 0 8 0 8 0 4 00 0000 44 2 6666666 8 8 666666666666 4 00000 0 8 2 2 8 0 88 0 0 88 6 0000 0000000000 8 0 000 44 2 22 7 6 2 99 9 6666 99 0 99 000 44 7 7 7777777777777777777777777777 77 7 3333 7 444 7 77777 99 1 4444 7 4 55 8888888888888888 0 22 8 7 22 0000000 00 444 7 0 7 222222 777777 77777 7 7 88 0 5 8 0 66 000 00 0 4444 3 5 77777 7 7 333 7 88 7 7 1111 7 7 7 7 7 7 7 4 0 000 7 4 7 99 7 999999999 99 7 22 7 7 3333 77 7 7 000000 2 7 555 7 7 333 7 88 5 33 888 0 7 88 0 0 000 7 7 3333333333333333333 4444 7 7 22 22 7 22 8888888888888888 0 7 55555555555555555 22222222 0 7 777 88888 0 88 0 0000000000000000000000000000000000000000000000000000000000000000000000 7 3 7
consensus : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTNC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGCGGGGNTC-ACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-A--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATCAA-A-TTCAAAACCTGTCA--AAGCGGAAGTACGGGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACN--TG-AAA-TAGATAGTATTG----TATTTGTTTTATCNGAAANGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-A-CCATC--A-----AC--C----CC----C-CCTGA----AAACATCA--AATTCA-TAAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACCTCAG-AGTAAT--TAA-A-AAATCTNAAAACGAGTGAAATAGATAGCATTGAATTTATT----T-AC--GGTAAGNC--TTTATTTAGATAGGTTTGCGAGTTTGTTTCCATGGTAACGA-CCAT-CAA-ANACGCCCTTCATGGAAACATCATA--ATTC----------AAAACCTGTC-AAA-CGGAAGTATAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCTAAAAA----T--ANTTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAGA-ATA-GGTTC--G-T--GAGTTCGTTTCC--A-TG-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--C--A----TG--TC--AAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATAATATTTATTT---TAT--AGAAA-GGGTGA-T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCATTGAGG---GAC-TGACACCAAAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
Reference ( family-683 ) : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTNC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGCGGGGNTC-ACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-A--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATCAA-A-TTCAAAACCTGTCA--AAGCGGAAGTACGGGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACN--TG-AAA-TAGATAGTATTG----TATTTGTTTTATCNGAAANGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-A-CCATC--A-----AC--C----CC----C-CCTGA----AAACATCA--AATTCA-TAAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACCTCAG-AGTAAT--TAA-A-AAATCTNAAAACGAGTGAAATAGATAGCATTGAATTTATT----T-AC--GGTAAGNC--TTTATTTAGATAGGTTTGCGAGTTTGTTTCCATGGTAACGA-CCAT-CAA-ANACGCCCTTCATGGAAACATCATA--ATTC----------AAAACCTGTC-AAA-NNGAAGTATAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCTAAAAA----T--ANTTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAGA-ATA-GGTTC--G-T--GAGTTCGTTTCC--A-TG-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--C--A----TG--TC--AAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATAATATTTATTT---TAT--AGAAA-GGGTGA-T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCATTGAGG---GAC-TGACACCAAAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
gi|1 : TGTATGGGACTCAG-AT--CAGAGTAAATAAAAA-AATGCTCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTTG--TTTTGACAGAAATGG-ATA-----TTTTTT-GATA---GGTAAATGAGTTCGTTTCCA-T-GGTAACCGACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CA-AAGCGTAGAAAT--ACA-TCA--AG--AGTAATAAAAAATATCTTAAA-TG-ACT--GAAA-TACG--T-A--AATGAT--ACTTAATTTATCAGAAAATAATCATTTTT-AGAAAGGTTTGCAGGTTCGTTCCC--GGTAACGATCACCAAACACGCGCTT----GATAGAGAC---AT-AA-A-TTCAAAACCTGTCA--AA-CGGAAGTACAA-ACTGATTGGAGAGTAAATTAAA--AAAATCT-AAAAA-ACT--TG-AAA-TAGATTGTATTG----TATTTGTTTTATCTGAAAAGGGCA--T-TTTTTAGATAGGTTGATGAGTTCGTTTCCATGGT-A-CG-A-CCATC--A-----AC--C----CC----C-CCTAA----AAACATCA--AATTC---AAAG-------CCTGTCAAAAGGGAAA-TATGTGACTGACCCTGG-AATAAT--TAA-T-CAATCAAAAAAC-AGTGAATTGTAAAGCATTGAATTTATT----T-AC--AGTAAGTC--TTTATTTAAATAAGTTTGTGAGTTTGTTTCCATGGTAACGG-CCAT-CAATATA---CCTTCCTAAAAACACCATA--ATTC----------AAAGCCTGTC-AAA-AAGAAGTATAA-ATTGG--TATGGGAGTATCTAAAAAAT--TCT-AAAA----T--AATTGAAA--TCTAT----GC-A-TATC-ATTCGTT--------TT--AG--------------CA-TAAAAAG-GA----TT-TTTTAAACATA-GGTTC--G-T--GAGTTCGTTTCC--ATTG-GT-ACGAACGC-TAA--------AC--ATACCCATGCTG--GATACATCAT-AA-TCACTGAGATTGGC--CATA----TG--TC--TAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-C---AAAATGTC-AAA-AAT--GAGTAACA-GGATAGCATAATATTTATTT---TCT--AGAAA-GGGTG--T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTCAATTGCCG-AGACG-A----AA-TG-T-ATTACAAAACC-TGTCAAAAAG-AAATCGAGC---GAC-TGACACCAGAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG----AGTAGGATA-GAATATTAT----TTTGTTTTAGC-AG---AAAGG-TTCTTTT-T-A-GTTACAT-GTA--GG-TCGTTT--CACAGTAACA-ATAAT-GATAAA-A-AAAAGGC---TTGCTGAAA-A-CGTC-------------------AT----------A-CC-G-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTAAGGA-AAAAAAACCACAGTTCGGGTGTTT-A---ATAGCTA-ACGCAGC---AAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACTCTAGCTCAGATGGAATA
gi|12 : GCTGAAAGA-CGTC-------------------ATTCCTC-AGAAA-CCTG-TCAAAAAA-GAAA--TGCCAACTCTCGTA--C-ACCGCCTCCCTCCCCCCCCCCC-CCCTTGT--------------GGCCCTGAA--------AATTTGAAGA-AAAAA---CACAGTTCGGGTGTT------ATAGCTATAC-CAGC-AAAAATATTGAG-CAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAC-CTAGCTCAGACGGAATA
gi|13 : ttgTATTGGACTCAGCACTCCAGAGTA--TAAAATTGTC--TCTGAAAATGAGTGAAATGTCGGTAGCACTGG--ATTTT--TTTTGACAGAAATGGAACA-----TTTTTT-GAT----GGTGCGTGAGTTCG-TTCCA-TAGGTAAC-GACC-ATCAAAC-ATACCCTACTCTGGAAACACCATAATTCACTGAAATTGACCAC-CT----T-CTCAAA----AAGC-CGGGGGTC-ACA-TCAGCAG--ATTAATAAattatatgaataacccctcgt
gi|15 : tGTAGTTCAAAA-ATT---CTAAAAATGAGAGAAATA--AATAGCATTGT--ATTCA--TTTTAACGGAATTTG--CA-----TTTTGTAGGTA---GATTCGTGAGTTCGTTCCCA-T-GTTAAC-GAAA-ATCAAAC-ATACCCTTC-CTGGAGACAT--GGATTCTCTGAAATT
gi|16 : aaggatgcgtgaggctgacaataaagttactTAGTACCGGGTATTCA--TTTTCATGGAAAAGG-GCA-----TTTCT--AACATTTGGTTCATGAGTTCATTTCCA-T-GGTAAC-AAAC-ATCAAACTATAACCTTG-CTGG----------ATTCATTGAAATTGACCATGCATTTGT-CTAAAA-TG-AAGTGTGGGACTA-GTA-T-A--AG--AGCA
gi|17 : AAAC-ATACCCTAC-CTGGAAATGACATAATCCACTGAAATTGA------------------------AGTGTGAGGTTC-ACA-T-A--AG--AATAATAAAAAAAAACTTTATATG-TCT--GAAA--AGGGTT-A--AAAGAT--ACCTAATTTAT---AAAAAGAATAAGATT-AGAAAGGTTCACGGGTTCGTTTCCAt
gi|18 : AGAGTAATTAAAAAAT--TCTAAAAAAAAAT--AATTGAAA--TATAT---AGA-A-TAGC-ATTCGTT--------TC--AA--------------CG-GAAAAAG-GATTTTTT-TTTTAG--ATA-AGTTC--G-T--GAGTTCGTTTCC--A-TG-GTAA
gi|19 : cTGTATGGGACTCAG-AT--CAGAGTAATTAAAAC--TT--TCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTTG--TTTTGACAGAAATGG-ACATCTATTTTTTT-GATA---AGTTC
gi|2 : GGATGTATGGGACTTCAATCAGAGTAA-TTAAA--ATTTTCT-AAAAATGAG--TGAAAA-TGGGTAG-ACTG----GATTTGTTTTGACAGAAATGGACA--TATTTTT--ATAGGTTCGTGAGTTCGTTTCCATGGTAA-CA-ACCCATA--A-----ACATC----CT----C-CCTGG----AAACA-CAATAATTCACTGAAATTGACCTCCTCTCAAA--CAAAG-CGTGGGGTTCACATCAGTAGTAAT--AAA-ATATATCTTAAAATGACTAAAATAGGT----T--AAT----------------GTAA-----TTT-TTTAGATAGGTTTGC-AGGTTGTTTCCATGGTAACGATCCA--CAA-AAACGCGCTTGATGGGGACATCA-A--ATTTAATAAAAAAAAAAACC-GTC-AAA-TCGAAGAACAAGACTGA--TGTCAGAGTAATT-AAAAAT--TCTAAAAA----T--ACTTAAAA--TAGAT---AGT-A-TGGT-ATTTGTT--------TT--AT--------------TC-TGAAAAG-GC----AT-TTTTAAA-ATA-GGTTA--A-T--GAGTTTGTTTCC--A-TG-GT-ACGAACGC-CAA--------AC--ATAACCTTGCTG--GAGACATCAT-AATTTACTGAGATTGGCCAC--A----TG--TCT-AAACGG-AACCGTAGGATT-GAT------ATAATAGCAA----TTT-T---AAAAAGT--AAA-AAT--GA-TAACATGGATAGCATAATATTTATTT---TATC-AAAAA-GGGTGA-T-TTTCAGCTAG-TTTTGT-----GAGCTCGTT-TCCAT--GT-AGACG-ATAATC-AAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTC-AAAGA-GCA-TGAGG---GAC-TGACACCAAAAG-AA--AAAA-AA---------TCTGAA--AATT--GAGG-CG---AAATA-GATA-GAAT-TTA-----TTTGTTTTAGC--G---AAAAGATACTTTT-TAA-GTTACAT-GTA--GGATCGTTT-CCACG--AACA-ATAA-----AAA-A-AAAAAAC---TTGCTG-AA-A-CGTC-------------------GTTCCTCAA--AA-CCTG-TCAAAAA---AAG--TG-CAACCCTCTAAGTC-C--------------CCCCCAC-CCCCTGT--------------G--CCTGAA--------AATTTGA-GA-AAAAA---CA-AGTTCGGATTTTTAA---ATAGTTATACGCAGCAAAAAATATTGAGANNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC-CTA-CTCAGACGGA
gi|20 : GACTGATTTCAAAGTAA-T-AAA--AATATCTTGAAAATACT--GG-AAA-TATATAGTATTG----TATTTGTTTTATATGAAAA------------------AGGTTAATGAGTTCGTTTCCATGGTtatgaataacccctcgttcaacagaaattatactttgcggtattatcacatgaatatttctacagaataataaatactgtacagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagtctcagacatttttctctgtcacatacatgtgtaataaaaacaaatccaaca
gi|21 : acaataaG-AAA-TAGATAGTATTG----TATTTGTTTTTTCAGAAAAAGGCA--T-TTTTTAGATTGGTTTATGTGTTCATTTCCATGGTAA-TG-A-CCATC--AAACATAC--C----TA----T-CCTGA----A
gi|22 : A-TAGG--TTA--AATGAT--ACTTAATTTATCAAATAATGATCATTTTT-AGATAGATTTTCAGGTTTGTTTCCATGGTAACGATCCCCAAAAACGCGCTT----GATGG
gi|24 : atTGTATGAAACTGAC-AT--CAGAGTAATTAAAAA-ATT---CTGAAAATGAGTGAAATG--GATAGCACTGA--ATTTATTTTTTAACAGAAATTG-ACA-----TTTT
gi|26 : aggaGAAG-A----AA-TA-T-ATT-CAAAACC-TGTCAAAAGA-GCATTT-GT---GAC-TGACACCAAAAG-AATAAAAA-AA---------TCTAAA--
gi|27 : GG-AACCGTAGGATT-GAC------AAAATAGCAA----TTTAA---AAAAAGAC-AAA-AAT--GAATAAAATGG
gi|3 : TTTCAAGAAAATGA-TCA-----TTTTAA-GATA---GGTTTGCAGGTTCGTTTCAAAT-GGTAAA-GATCGACCAAAA-ATAGCGTTG-ATGGAGACAC------TCA---AAGTTCAACAC-C-----TGTTCAAAACGGAAGTACAAGACTTGATAGTCAG-AGTCAGTAA-AAAAAAT-TCCAAAAATGCGTT--GAAAATGGGA-T-AGTAATAATGTATTTGTTTTATCTGAAAGGG--CATTTTTTAGATAGGTTAGTGAGTTCGTTTCAATGGTAACGACCATCAACCCCCCCCCCCCCAAAAAAAAACCCCATCAA-A-ATCAAAGTCTGTCAGAAAG-GGAAATATGGGACTGACCCTAGA--AA-TTAATTTCAAATCA-AAAAAAACGAGTG-AAA-TTGATAGCATTG----AAT-----TTAT-----------A--G-TTTTGAG------------GTTCTTTCCCATGGTAAACG-A-TCAACGAA-----AC--A----ACATAGC-TTTGAGTGGAGACATCA--AAATTA-TAAAAA------CCTGCCAAAACAGAAGCTATAGG-CTGAATTCAG-AGCAAT--TAA-A-AAAAATTACAATAATTGAAATAG-TAGTATTGTATTTGTT----TTATCTGGAAAGGCATTTTTTTTTTAT-GGTTCGTGAGTTTGTTTCCATGGTAACGG-CCATATAA-ATATACCCTTCCTAAAAACACCATGATATTC----------AAAGCCTGTC-AAA-GGGAAGT-TAAAATTGGTATGTGAGAGTAATTTAAAAAA--TCTGAAAA----T--AATTGGAAATTATGT---AGC-A-TATCTATTCGTT--------TTAAAA--------------CA-TAAAAAG-AAAGAGTT-ATTTAG--ATATTGTTCAGA-TAGAAGTTCGTTTCCGAG-TGCGCCACGATAGCGCAATAGGCGCTAT--ATTTCCTTGCTGATGA-ACATCATGAATTCACTGAGATGGGC--C--AC---TGTCTC--AAAC-G-AACCGTAGGATTGGAT------ATAATAGC-AAATTTTT-A---AAAAAGTC-AAATAATTGAAGTAACAT-GATAGC--AATA-TTATTT---TAT--CAGAC-GGGTGGTT-TTTCAGCTAGTTTTAGT-----GAGTTCGTTATCCATG-GT-A-ACGCATAATCAAATA-ATGTC-ATTGCCGAACGCG-A----AATTG-TCATT-TAAAACCTTGTCAAAAGA-GC--TAAGG---GACTTGACACCAAAAGAAAT-AAAACAAAAGAAATTCTTTAAACCAA-TCAGA-G-CG---GAATA--ACA-GAAT-TT-T----TTTGTTCT-GCGAG---AAGAG-TACTTTT-T-AGGTTACAC-GCACGGAATCGTTTCCCACGA-AACA-ATAAT-AA
gi|4 : ataAAAAAG-GC----AT-TTTTA-A-ATA-GGTTA--A-T--GAGTTTG-TTCC--A-TG-GTAACGACCAT-C-A--------AC--ACACCCT-------AAAACATCAA-AATTC-C--AAA---GC--C-------TG--TCAAAAAAGGTAAATATACGACT-GACCCTAGAATAAT--C-A----ATC-A---AA----TCAAAA-AAC--GAGTGAAATTGTTAGCATTGAATTTATTTGAGTAC--AGCAA-GTCTA-----TTAAAATAA--TTTGT-----GAGTTCGTT-TCAATG-GTAA-ACG-AT-ATCAAAT--ATGTC-ATTGCCGAAGACGAA----AA-TA-T-ATT-CAAAA-C-TGTCAAAAGAGGCATTT-GG---AAC-TGACACCAAAAG-AATAAAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GGTA-GAAT-TTTC----ATTGTTC--GC-AGAA-AAAAG-TACTTTTAT-A-TTGACATCGTA--GATTCGTTT-CCACGGT---A-ATAAT-AATAAA-ATAAAAAAC---TTGCTGAAA-A-CGT---------------------TTCCTCAA--AA-TCTG-T-AAAAAC-GAAG--TG-CAACCCTCTAT--C-C--------------CCCCTTT-CCCTTGT--------------T--CCTGAA--------AATTTGA-GA-AAAAA---CACAGTTCGAGTGTTT-A---ATAGTTTTACACAGC-AAAAATATTGAG-CAA------aa
gi|5 : tctgaTAATTTAAAGATAATCTAAAAA----TTAAGTTGAAT--TTTATCTTAGCGA-TATC-ATTCGTTATTTTAAATT--AAAAACATCAAACAAACA-GAAAAGGAGA----TT-TATTAGA-ATA-GGATC--ACT--GAGTTCGTTTCA--ACTG-GTAAAGAG--------------------TAATTTTGCTG--AGAACAT--T-GATTCACTGAGATTGGC--C--AACTTTG--TC--TAATGG-AAC-GTGAGATT-GGA------ATGTTAGC-GAAT-TTT-ATTGAAAAAGTC-AAA-AATT-GAGTACC-TGGATCGCATGA-AT--ATTT---TATTCAGAAATGGGTGA-TGTTTCAGCT-GTTGTTGTTTTTAGAGTT-GTT-TTCATGCGT-C-AAG-ATAATGAAATCTATGTC-ATTGCC-AGGACG-ACCTGAA-TGGT-ATT-CAAA----TGT-AAAGAA-GCATTGAGG---GA--TGACAC----AG-GG-----A-AA---------T----A--AA-T--GA-GGCGGAGAACTA-AATATG--T-TTATATTTTTTGTTTTAGC-AGTAGAAAAG-TACTTTT-T-T-GATACCT-GTAG-GGATCATTT--CATGGTGATACATA---GATAAATA-AAAGAACCGGTTGCAGAAA-AGCTTCAATAGGACCATTAGTGGATATTCCCG-A--AA-CCTGATCAAAAACAGAAAGTTG-AAACACGCTTA--CGA--------------CGCCTCCAACCTTGTCTTTTTTTTTTTGCG--CTTGAATCTAAAGCAATGAGAAGAGAAAAA---AACATTTCGGGTGTTT-GTTCAT-GTTATACGCAGacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|6 : TGAGTTTGTTTCCA-T-GATAAC-GACC-ATAAACC-ATTCCCTAC-CTACAAACATCATAATTCACTGAAATTGAGCAC-C-----T-CTCAAA-CA-AAGCATAGGGTTC-ACA-TCA---G--AGTAATAAAAA-TATCTTAGAATG-ACT--GAAA-TAGG--TTA--AATGAT--ACTTAATTTATCAGAAAACGATTATTTTT-AGATAGGTTTGCAGGTTCGTTTCCAAAGTAACGATCTCCAAACGCGTGCTT----GATGGAGAC---ATCAA-AATTCAAAACCTGTCA--AAACGGATGTGCAAGACTGATGTCAGAGTAA-TTAAA--AAAATTT-AAAAATACT--TG-AAA-TAGATAGTATTG----TATTTGTTTTATCTGAAATAGGCATCT-TTTTTAGATAGGTTAATGAGTTTGTTTCCATAGTAA-CG-A--CATC--A-----AA--CAA--CC----C-CCT-A----AAACATCA--AAATC--TAAAG-------CCTGTCAAAAGGAAAA-TATGGGACTGACCCTAG-AATGAT--TAATC-AAATCAACAAACGAGTGAAATTGATAGCATTGGCTTTATTTGAGT-AC--AGTAAGTC--TTTATTTAGATAAATTTGTGAGTTTGTTTCCATGGTGACGA-CCAT-CAA-ACATACCCTTCATGGAAACATCATA--ATTC----------AAAATCTGTCTTAA-CAGAAGAATAAGACTGA--TGC-AAAGTAATTAAAATAT--TATGAAAA----T--ACTTAAAA--TAgccaatattcgccgcgtaatcttgtgtatgaactcgttgcgtttattatctccagtgaacgaggagttatttcattcattcgggtttgtaggctgtctttctacacgcatcagacgaatatgaataacccatgtttcaccgaaattattttgcggtatttatcactgacatttaacagaagtaat
gi|7 : tttatcggtaaaTGG--TGTGAGAGTAATTAAAA-AT--TCTAAAAA----T--GATTCAAA--TATAT---AGA-A-CATC-ATTCGTT--------TT--AA--------------CATAAAAAAG-GA----TTCTTTTAAAGATA-GTTTA--A-T--GGGTTCGCTTCC--A-TG-GTAACGAACGC-CAA--------ACATATACCCTTGCTG--GAGAGATCAT-AATTCACTGAGATTGGC--C--
gi|7 : tAGCTAGTTTT-GT-----GAGTTCGTT-TCCATG-GT-A-AAG-ATAATTAAAT--ATGGC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCA-TGAGGGACGAC-TGACACC------------AA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-AAAT-TTTA----TTTGTTTTATC-AAC--AAAAG-TACTTTT-T-AGGTTAGAT-GTA--GGATCGTTT-CCACGAAAAAA-ATAATAAATAAT-A-AAATAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-AG-AA-TCTG-TCAAAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgtgagttcgtttccatggtaaagataattaaatatggcattgccgaagacgaaatgtattcaaaacctgtcaaaagagcatgagggacgactgacaccaaaatctaaaaatgagcgaaatagataaaattttatttgttttatcaacaaaagtactttttaggttagatgtaggatcgtttccacgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|8 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTATGGGACTCA-ATCAGAGTAA-TTAAA--ATG-TCT-GAAAATGAG--TG-AAAATGGGTAGCACTGGAAGTATT-GTTT-A-CAGAAATGGACA--T-TTT---AATAG-TATGTGAGTTCGTTTCCATG-TAA-CGGA-CCATC--A-----AA--CATAACC----TACCTGA----AA-CACCA--AATTTA--------------CTG---AAA--------ATG--ACC-ACCTC-----TCATCTTAA-A-TGACTTGAAAAT-AGTTAAAT------TACTTAATTTAT--------C--AGAAAAGG--ATTATTTAGATAG--TTGCAGGTTCGTT-CCATG-TAACGA-TCAC-CAA-AAACGCGCTTGATGGAGACATCAAG--ATTC----------AAAACTTGTC-AAAGCGGAAGTTCAAGACTGA--TGTCAGAGTAATTAATAAAA--TGTAAAAA----T--ACCTGAAA--TAGAT---AGT-ATTGTA-ATT-GTT--------TT--A
gi|8 : ggataaatATCTTAAA-TG-ACTTGAAAA-TAGT--T-A--AAT--T--ACTTAATTTATCAGAAAAGGATTATTT---AGATAG--TTGCAGGTTCGTT-CCATG-TAACGATCACCAAAAACGCGCTT----GATGGAGAC---ATCAAGA-TTCAAAACTTGTCA--AAGCGGAAGTTCAAGACTGATGTCAGAGTAA-TTAAT--AAAATGT-AAAAATACC--TG-AAA-TAGATAGTATTG----TAATTGTTTTA
gi|9 : ggataaatgtatgggactcaatcagagtaattaaaatgtctgaaaatgagtgaaaatgggtagcactggaagtattgtttacagaaatggacattttaatagtatgtgagttcgtttccatgtaacggaccatcaaacataacctacctgaaacaccaaatttactgaaaatgaccacctctcCTGAAA-A-CGCC-------------------ATTCCTC-A--AAACCTG-TCAAAG-C-GAAG--TG-CAACCCTCTAA--C-A--------------CT--TGC-CCCGTAT--------------G--CCTGAA--------AATTTCAG-A-AAAAA---TACAGTCCGGGTGTTT-A---ATAGCTATACGCAGG-AAAAATATTGAG-CAA------
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAAATCCCTCGTTTCCAAAGAAATTATACTTTGCGCTATTTAGCACTGTACAATATTTTTACAGAAATAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTTGGCATGCAGATTTCGGACATTCAGCGTCATTTTCCCTGTCACAAACATGTGTAATGAAAATCCAAGACAAATTTAAGTGACAAGCGC
Unaligned ( gi|11 ): TACTTTGCGGTATTTATCACTGAATATTTCTACAAAAATAATAATACTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCCGGCCTGTAAATTTCGGAAATTCTGCATGATTTTCCGCTGTCACATACATGTGTAATAAATAAAAAATCCAACACAATTTAGTGGCAAACGCAACGTTACACGATGT
Unaligned ( gi|14 ): ACACGTATCGCCTTACTGCCGAAAATAAACCGTTCTGGAAAATCAAGTCCGGCATGTAGATTCGTACATGTTCCTGCCTGTGACTTTTTCCCTGTCACATACATGTGTAATAAAAACAAATTCCCACCACAAATTGAAAGGGCTCTAAAGTGGCAAGCGCAACGTACAACCGAGATGTT
Unaligned ( gi|23 ): AGATTTCAGACATTTCCCTGTCACATACATGTATAATAAATACAAATTTAAGCGGCAAGAGCAACGTGCACGATGCTCTCTCTCTCTCTCTCTCTCTCT
Unaligned ( gi|25 ): ACCTCTCATATCCACAGAAATGATACTTTGCGGTATTTATCACTGAATATCGTTACAGAAATAATAAATTCTATACA
Alignments
lowQualScore : 1 11 22222222 11 1111 11111 11 111 1111 222222222 2222 11 11 1 11 2222222 1111 111 111 11 1111 1111 4444444444444444444444444 1111 11 55555555555555 11111111 11 1111 1 2222222 444444444444 11111 11 1111 3333333333 111 1111 111 4444444444444444444444444444 2222 222 11111 1111 2222222222222222 3333333 11 222 111111 333333 11111 11 111 11 2222 11111 11 1111 111 11 222222222 1111 222222 222 111 11 11 111 111 4444444444444444444 1111 4444444444444444 44444444444444444 22222222 1 111 11111 8888888888888888888888888888888888888888888888888888888888888888888888 1
lowQualScore : 0 33 44 44444444 11 99 2222 1 99 44444 00 111 6 6 6 1 6 5 1 5 2222 6 555555555 2222 44 1 11 6 6 55 99 0 3 0 0 8 11 6 0000000 1 99 1 6 1 0 1 1 1 7777 777 2 111 33 99 1 44 5 77 22 5 1 888 5 5 0 0000 0 555 88 1 1111 88888 0 3 6 6 77 2222222222222222222222222 1 4444 0 3 11 1 00000000000000 3 66666666 5 3 5 3 8 1 11 8888 22 3 5555555 0 0 555555555555 1 88888 6 0 3 3 0 8 11 8 1 77 0 4444 5555555555 0 8 222 77 3 99 6 3 2 66 0 0000 66 1 66 000 77 5 5 0000000000000000000000000000 77 5 4444 5 000 5 55555 77 0 2222 5 8 33 6666666666666666 1 99 7 6 99 5555555 11 000 6 1 6 999999 222222 77777 6 6 55 1 2 0 6 11 444 99 8 5555 7 3 66666 6 6 888 6 55 6 5 2222 5 5 5 5 0 5 5 8 5 000 5 1 5 99 5 222222222 77 6 99 6 6 3333 77 6 6 888888 3 6 777 6 6 555 6 55 3 33 222 1 6 99 8 8 444 5 5 4444444444444444444 9999 5 5 99 99 6 99 4444444444444444 1 6 22222222222222222 44444444 2 6 111 55555 1 88 8 7777777777777777777777777777777777777777777777777777777777777777777777 0 3 6
lowQualScore : . .. .. ........ .. .. .... . .. ..... .. ... . . . . . . . . .... . ......... .... .. . .. . . .. .. . . . . . .. . ....... . .. . . . . . . . .... ... . ... .. .. . .. . .. .. . . ... . . . .... . ... .. . .... ..... . . . . .. ......................... . .... . . .. . .............. . ........ . . . . . . .. .... .. . ....... . . ............ . ..... . . . . . . .. . . .. . .... .......... . . ... .. . .. . . . .. . .... .. . .. ... .. . . ............................ .. . .... . ... . ..... .. . .... . . .. ................ . .. . . .. ....... .. ... . . . ...... ...... ..... . . .. . . . . .. ... .. . .... . . ..... . . ... . .. . . .... . . . . . . . . . ... . . . .. . ......... .. . .. . . .... .. . . ...... . . ... . . ... . .. . .. ... . . .. . . ... . . ................... .... . . .. .. . .. ................ . . ................. ........ . . ... ..... . .. . ...................................................................... . . .
lowQualScore : 0 88 88 66666666 00 22 0000 7 66 33333 22 777 7 7 7 0 7 7 0 7 1111 7 888888888 2222 33 0 88 7 7 88 22 8 2 8 6 0 00 7 3333333 0 22 0 7 0 7 7 0 0 0000 555 5 000 88 00 4 99 7 99 33 7 7 999 0 0 9 6666 1 444 33 7 4444 44444 7 0 7 7 77 7777777777777777777777777 0 2222 8 8 00 4 00000000000000 8 44444444 0 8 0 8 0 4 00 0000 44 2 6666666 8 8 666666666666 4 00000 0 8 2 2 8 0 88 0 0 88 6 0000 0000000000 8 0 666 44 2 22 7 6 2 99 9 6666 99 0 99 000 44 7 7 7777777777777777777777777777 77 7 3333 7 444 7 77777 99 1 4444 7 4 55 8888888888888888 0 22 8 7 22 0000000 00 444 7 0 7 222222 777777 77777 7 7 88 0 5 8 0 66 000 00 0 4444 3 5 77777 7 7 333 7 88 7 7 1111 7 7 7 7 7 7 7 4 0 000 7 4 7 99 7 999999999 99 7 22 7 7 3333 77 7 7 000000 2 7 555 7 7 333 7 88 5 33 888 0 7 88 0 0 000 7 7 3333333333333333333 4444 7 7 22 22 7 22 8888888888888888 0 7 55555555555555555 22222222 0 7 777 88888 0 88 0 0000000000000000000000000000000000000000000000000000000000000000000000 7 3 7
consensus : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTNC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGCGGGGNTC-ACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-A--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATCAA-A-TTCAAAACCTGTCA--AAGCGGAAGTACGGGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACN--TG-AAA-TAGATAGTATTG----TATTTGTTTTATCNGAAANGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-A-CCATC--A-----AC--C----CC----C-CCTGA----AAACATCA--AATTCA-TAAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACCTCAG-AGTAAT--TAA-A-AAATCTNAAAACGAGTGAAATAGATAGCATTGAATTTATT----T-AC--GGTAAGNC--TTTATTTAGATAGGTTTGCGAGTTTGTTTCCATGGTAACGA-CCAT-CAA-ANACGCCCTTCATGGAAACATCATA--ATTC----------AAAACCTGTC-AAA-CGGAAGTATAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCTAAAAA----T--ANTTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAGA-ATA-GGTTC--G-T--GAGTTCGTTTCC--A-TG-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--C--A----TG--TC--AAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATAATATTTATTT---TAT--AGAAA-GGGTGA-T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCATTGAGG---GAC-TGACACCAAAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
Reference ( family-683 ) : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTNC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGCGGGGNTC-ACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-A--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATCAA-A-TTCAAAACCTGTCA--AAGCGGAAGTACGGGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACN--TG-AAA-TAGATAGTATTG----TATTTGTTTTATCNGAAANGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-A-CCATC--A-----AC--C----CC----C-CCTGA----AAACATCA--AATTCA-TAAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACCTCAG-AGTAAT--TAA-A-AAATCTNAAAACGAGTGAAATAGATAGCATTGAATTTATT----T-AC--GGTAAGNC--TTTATTTAGATAGGTTTGCGAGTTTGTTTCCATGGTAACGA-CCAT-CAA-ANACGCCCTTCATGGAAACATCATA--ATTC----------AAAACCTGTC-AAA-CGGAAGTATAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCTAAAAA----T--ANTTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAGA-ATA-GGTTC--G-T--GAGTTCGTTTCC--A-TG-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--C--A----TG--TC--AAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATAATATTTATTT---TAT--AGAAA-GGGTGA-T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCATTGAGG---GAC-TGACACCAAAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
gi|1 : TGTATGGGACTCAG-AT--CAGAGTAAATAAAAA-AATGCTCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTTG--TTTTGACAGAAATGG-ATA-----TTTTTT-GATA---GGTAAATGAGTTCGTTTCCA-T-GGTAACCGACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CA-AAGCGTAGAAAT--ACA-TCA--AG--AGTAATAAAAAATATCTTAAA-TG-ACT--GAAA-TACG--T-A--AATGAT--ACTTAATTTATCAGAAAATAATCATTTTT-AGAAAGGTTTGCAGGTTCGTTCCC--GGTAACGATCACCAAACACGCGCTT----GATAGAGAC---AT-AA-A-TTCAAAACCTGTCA--AA-CGGAAGTACAA-ACTGATTGGAGAGTAAATTAAA--AAAATCT-AAAAA-ACT--TG-AAA-TAGATTGTATTG----TATTTGTTTTATCTGAAAAGGGCA--T-TTTTTAGATAGGTTGATGAGTTCGTTTCCATGGT-A-CG-A-CCATC--A-----AC--C----CC----C-CCTAA----AAACATCA--AATTC---AAAG-------CCTGTCAAAAGGGAAA-TATGTGACTGACCCTGG-AATAAT--TAA-T-CAATCAAAAAAC-AGTGAATTGTAAAGCATTGAATTTATT----T-AC--AGTAAGTC--TTTATTTAAATAAGTTTGTGAGTTTGTTTCCATGGTAACGG-CCAT-CAATATA---CCTTCCTAAAAACACCATA--ATTC----------AAAGCCTGTC-AAA-AAGAAGTATAA-ATTGG--TATGGGAGTATCTAAAAAAT--TCT-AAAA----T--AATTGAAA--TCTAT----GC-A-TATC-ATTCGTT--------TT--AG--------------CA-TAAAAAG-GA----TT-TTTTAAACATA-GGTTC--G-T--GAGTTCGTTTCC--ATTG-GT-ACGAACGC-TAA--------AC--ATACCCATGCTG--GATACATCAT-AA-TCACTGAGATTGGC--CATA----TG--TC--TAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-C---AAAATGTC-AAA-AAT--GAGTAACA-GGATAGCATAATATTTATTT---TCT--AGAAA-GGGTG--T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTCAATTGCCG-AGACG-A----AA-TG-T-ATTACAAAACC-TGTCAAAAAG-AAATCGAGC---GAC-TGACACCAGAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG----AGTAGGATA-GAATATTAT----TTTGTTTTAGC-AG---AAAGG-TTCTTTT-T-A-GTTACAT-GTA--GG-TCGTTT--CACAGTAACA-ATAAT-GATAAA-A-AAAAGGC---TTGCTGAAA-A-CGTC-------------------AT----------A-CC-G-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTAAGGA-AAAAAAACCACAGTTCGGGTGTTT-A---ATAGCTA-ACGCAGC---AAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACTCTAGCTCAGATGGAATA
gi|12 : GCTGAAAGA-CGTC-------------------ATTCCTC-AGAAA-CCTG-TCAAAAAA-GAAA--TGCCAACTCTCGTA--C-ACCGCCTCCCTCCCCCCCCCCC-CCCTTGT--------------GGCCCTGAA--------AATTTGAAGA-AAAAA---CACAGTTCGGGTGTT------ATAGCTATAC-CAGC-AAAAATATTGAG-CAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAC-CTAGCTCAGACGGAATA
gi|13 : ttgTATTGGACTCAGCACTCCAGAGTA--TAAAATTGTC--TCTGAAAATGAGTGAAATGTCGGTAGCACTGG--ATTTT--TTTTGACAGAAATGGAACA-----TTTTTT-GAT----GGTGCGTGAGTTCG-TTCCA-TAGGTAAC-GACC-ATCAAAC-ATACCCTACTCTGGAAACACCATAATTCACTGAAATTGACCAC-CT----T-CTCAAA----AAGC-CGGGGGTC-ACA-TCAGCAG--ATTAATAAattatatgaataacccctcgt
gi|15 : tGTAGTTCAAAA-ATT---CTAAAAATGAGAGAAATA--AATAGCATTGT--ATTCA--TTTTAACGGAATTTG--CA-----TTTTGTAGGTA---GATTCGTGAGTTCGTTCCCA-T-GTTAAC-GAAA-ATCAAAC-ATACCCTTC-CTGGAGACAT--GGATTCTCTGAAATT
gi|16 : aaggatgcgtgaggctgacaataaagttactTAGTACCGGGTATTCA--TTTTCATGGAAAAGG-GCA-----TTTCT--AACATTTGGTTCATGAGTTCATTTCCA-T-GGTAAC-AAAC-ATCAAACTATAACCTTG-CTGG----------ATTCATTGAAATTGACCATGCATTTGT-CTAAAA-TG-AAGTGTGGGACTA-GTA-T-A--AG--AGCA
gi|17 : AAAC-ATACCCTAC-CTGGAAATGACATAATCCACTGAAATTGA------------------------AGTGTGAGGTTC-ACA-T-A--AG--AATAATAAAAAAAAACTTTATATG-TCT--GAAA--AGGGTT-A--AAAGAT--ACCTAATTTAT---AAAAAGAATAAGATT-AGAAAGGTTCACGGGTTCGTTTCCAt
gi|18 : AGAGTAATTAAAAAAT--TCTAAAAAAAAAT--AATTGAAA--TATAT---AGA-A-TAGC-ATTCGTT--------TC--AA--------------CG-GAAAAAG-GATTTTTT-TTTTAG--ATA-AGTTC--G-T--GAGTTCGTTTCC--A-TG-GTAA
gi|19 : cTGTATGGGACTCAG-AT--CAGAGTAATTAAAAC--TT--TCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTTG--TTTTGACAGAAATGG-ACATCTATTTTTTT-GATA---AGTTC
gi|2 : GGATGTATGGGACTTCAATCAGAGTAA-TTAAA--ATTTTCT-AAAAATGAG--TGAAAA-TGGGTAG-ACTG----GATTTGTTTTGACAGAAATGGACA--TATTTTT--ATAGGTTCGTGAGTTCGTTTCCATGGTAA-CA-ACCCATA--A-----ACATC----CT----C-CCTGG----AAACA-CAATAATTCACTGAAATTGACCTCCTCTCAAA--CAAAG-CGTGGGGTTCACATCAGTAGTAAT--AAA-ATATATCTTAAAATGACTAAAATAGGT----T--AAT----------------GTAA-----TTT-TTTAGATAGGTTTGC-AGGTTGTTTCCATGGTAACGATCCA--CAA-AAACGCGCTTGATGGGGACATCA-A--ATTTAATAAAAAAAAAAACC-GTC-AAA-TCGAAGAACAAGACTGA--TGTCAGAGTAATT-AAAAAT--TCTAAAAA----T--ACTTAAAA--TAGAT---AGT-A-TGGT-ATTTGTT--------TT--AT--------------TC-TGAAAAG-GC----AT-TTTTAAA-ATA-GGTTA--A-T--GAGTTTGTTTCC--A-TG-GT-ACGAACGC-CAA--------AC--ATAACCTTGCTG--GAGACATCAT-AATTTACTGAGATTGGCCAC--A----TG--TCT-AAACGG-AACCGTAGGATT-GAT------ATAATAGCAA----TTT-T---AAAAAGT--AAA-AAT--GA-TAACATGGATAGCATAATATTTATTT---TATC-AAAAA-GGGTGA-T-TTTCAGCTAG-TTTTGT-----GAGCTCGTT-TCCAT--GT-AGACG-ATAATC-AAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTC-AAAGA-GCA-TGAGG---GAC-TGACACCAAAAG-AA--AAAA-AA---------TCTGAA--AATT--GAGG-CG---AAATA-GATA-GAAT-TTA-----TTTGTTTTAGC--G---AAAAGATACTTTT-TAA-GTTACAT-GTA--GGATCGTTT-CCACG--AACA-ATAA-----AAA-A-AAAAAAC---TTGCTG-AA-A-CGTC-------------------GTTCCTCAA--AA-CCTG-TCAAAAA---AAG--TG-CAACCCTCTAAGTC-C--------------CCCCCAC-CCCCTGT--------------G--CCTGAA--------AATTTGA-GA-AAAAA---CA-AGTTCGGATTTTTAA---ATAGTTATACGCAGCAAAAAATATTGAGANNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC-CTA-CTCAGACGGA
gi|20 : GACTGATTTCAAAGTAA-T-AAA--AATATCTTGAAAATACT--GG-AAA-TATATAGTATTG----TATTTGTTTTATATGAAAA------------------AGGTTAATGAGTTCGTTTCCATGGTtatgaataacccctcgttcaacagaaattatactttgcggtattatcacatgaatatttctacagaataataaatactgtacagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagtctcagacatttttctctgtcacatacatgtgtaataaaaacaaatccaaca
gi|21 : acaataaG-AAA-TAGATAGTATTG----TATTTGTTTTTTCAGAAAAAGGCA--T-TTTTTAGATTGGTTTATGTGTTCATTTCCATGGTAA-TG-A-CCATC--AAACATAC--C----TA----T-CCTGA----A
gi|22 : A-TAGG--TTA--AATGAT--ACTTAATTTATCAAATAATGATCATTTTT-AGATAGATTTTCAGGTTTGTTTCCATGGTAACGATCCCCAAAAACGCGCTT----GATGG
gi|24 : atTGTATGAAACTGAC-AT--CAGAGTAATTAAAAA-ATT---CTGAAAATGAGTGAAATG--GATAGCACTGA--ATTTATTTTTTAACAGAAATTG-ACA-----TTTT
gi|26 : aggaGAAG-A----AA-TA-T-ATT-CAAAACC-TGTCAAAAGA-GCATTT-GT---GAC-TGACACCAAAAG-AATAAAAA-AA---------TCTAAA--
gi|27 : GG-AACCGTAGGATT-GAC------AAAATAGCAA----TTTAA---AAAAAGAC-AAA-AAT--GAATAAAATGG
gi|3 : TTTCAAGAAAATGA-TCA-----TTTTAA-GATA---GGTTTGCAGGTTCGTTTCAAAT-GGTAAA-GATCGACCAAAA-ATAGCGTTG-ATGGAGACAC------TCA---AAGTTCAACAC-C-----TGTTCAAAACGGAAGTACAAGACTTGATAGTCAG-AGTCAGTAA-AAAAAAT-TCCAAAAATGCGTT--GAAAATGGGA-T-AGTAATAATGTATTTGTTTTATCTGAAAGGG--CATTTTTTAGATAGGTTAGTGAGTTCGTTTCAATGGTAACGACCATCAACCCCCCCCCCCCCAAAAAAAAACCCCATCAA-A-ATCAAAGTCTGTCAGAAAG-GGAAATATGGGACTGACCCTAGA--AA-TTAATTTCAAATCA-AAAAAAACGAGTG-AAA-TTGATAGCATTG----AAT-----TTAT-----------A--G-TTTTGAG------------GTTCTTTCCCATGGTAAACG-A-TCAACGAA-----AC--A----ACATAGC-TTTGAGTGGAGACATCA--AAATTA-TAAAAA------CCTGCCAAAACAGAAGCTATAGG-CTGAATTCAG-AGCAAT--TAA-A-AAAAATTACAATAATTGAAATAG-TAGTATTGTATTTGTT----TTATCTGGAAAGGCATTTTTTTTTTAT-GGTTCGTGAGTTTGTTTCCATGGTAACGG-CCATATAA-ATATACCCTTCCTAAAAACACCATGATATTC----------AAAGCCTGTC-AAA-GGGAAGT-TAAAATTGGTATGTGAGAGTAATTTAAAAAA--TCTGAAAA----T--AATTGGAAATTATGT---AGC-A-TATCTATTCGTT--------TTAAAA--------------CA-TAAAAAG-AAAGAGTT-ATTTAG--ATATTGTTCAGA-TAGAAGTTCGTTTCCGAG-TGCGCCACGATAGCGCAATAGGCGCTAT--ATTTCCTTGCTGATGA-ACATCATGAATTCACTGAGATGGGC--C--AC---TGTCTC--AAAC-G-AACCGTAGGATTGGAT------ATAATAGC-AAATTTTT-A---AAAAAGTC-AAATAATTGAAGTAACAT-GATAGC--AATA-TTATTT---TAT--CAGAC-GGGTGGTT-TTTCAGCTAGTTTTAGT-----GAGTTCGTTATCCATG-GT-A-ACGCATAATCAAATA-ATGTC-ATTGCCGAACGCG-A----AATTG-TCATT-TAAAACCTTGTCAAAAGA-GC--TAAGG---GACTTGACACCAAAAGAAAT-AAAACAAAAGAAATTCTTTAAACCAA-TCAGA-G-CG---GAATA--ACA-GAAT-TT-T----TTTGTTCT-GCGAG---AAGAG-TACTTTT-T-AGGTTACAC-GCACGGAATCGTTTCCCACGA-AACA-ATAAT-AA
gi|4 : ataAAAAAG-GC----AT-TTTTA-A-ATA-GGTTA--A-T--GAGTTTG-TTCC--A-TG-GTAACGACCAT-C-A--------AC--ACACCCT-------AAAACATCAA-AATTC-C--AAA---GC--C-------TG--TCAAAAAAGGTAAATATACGACT-GACCCTAGAATAAT--C-A----ATC-A---AA----TCAAAA-AAC--GAGTGAAATTGTTAGCATTGAATTTATTTGAGTAC--AGCAA-GTCTA-----TTAAAATAA--TTTGT-----GAGTTCGTT-TCAATG-GTAA-ACG-AT-ATCAAAT--ATGTC-ATTGCCGAAGACGAA----AA-TA-T-ATT-CAAAA-C-TGTCAAAAGAGGCATTT-GG---AAC-TGACACCAAAAG-AATAAAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GGTA-GAAT-TTTC----ATTGTTC--GC-AGAA-AAAAG-TACTTTTAT-A-TTGACATCGTA--GATTCGTTT-CCACGGT---A-ATAAT-AATAAA-ATAAAAAAC---TTGCTGAAA-A-CGT---------------------TTCCTCAA--AA-TCTG-T-AAAAAC-GAAG--TG-CAACCCTCTAT--C-C--------------CCCCTTT-CCCTTGT--------------T--CCTGAA--------AATTTGA-GA-AAAAA---CACAGTTCGAGTGTTT-A---ATAGTTTTACACAGC-AAAAATATTGAG-CAA------aa
gi|5 : tctgaTAATTTAAAGATAATCTAAAAA----TTAAGTTGAAT--TTTATCTTAGCGA-TATC-ATTCGTTATTTTAAATT--AAAAACATCAAACAAACA-GAAAAGGAGA----TT-TATTAGA-ATA-GGATC--ACT--GAGTTCGTTTCA--ACTG-GTAAAGAG--------------------TAATTTTGCTG--AGAACAT--T-GATTCACTGAGATTGGC--C--AACTTTG--TC--TAATGG-AAC-GTGAGATT-GGA------ATGTTAGC-GAAT-TTT-ATTGAAAAAGTC-AAA-AATT-GAGTACC-TGGATCGCATGA-AT--ATTT---TATTCAGAAATGGGTGA-TGTTTCAGCT-GTTGTTGTTTTTAGAGTT-GTT-TTCATGCGT-C-AAG-ATAATGAAATCTATGTC-ATTGCC-AGGACG-ACCTGAA-TGGT-ATT-CAAA----TGT-AAAGAA-GCATTGAGG---GA--TGACAC----AG-GG-----A-AA---------T----A--AA-T--GA-GGCGGAGAACTA-AATATG--T-TTATATTTTTTGTTTTAGC-AGTAGAAAAG-TACTTTT-T-T-GATACCT-GTAG-GGATCATTT--CATGGTGATACATA---GATAAATA-AAAGAACCGGTTGCAGAAA-AGCTTCAATAGGACCATTAGTGGATATTCCCG-A--AA-CCTGATCAAAAACAGAAAGTTG-AAACACGCTTA--CGA--------------CGCCTCCAACCTTGTCTTTTTTTTTTTGCG--CTTGAATCTAAAGCAATGAGAAGAGAAAAA---AACATTTCGGGTGTTT-GTTCAT-GTTATACGCAGacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|6 : TGAGTTTGTTTCCA-T-GATAAC-GACC-ATAAACC-ATTCCCTAC-CTACAAACATCATAATTCACTGAAATTGAGCAC-C-----T-CTCAAA-CA-AAGCATAGGGTTC-ACA-TCA---G--AGTAATAAAAA-TATCTTAGAATG-ACT--GAAA-TAGG--TTA--AATGAT--ACTTAATTTATCAGAAAACGATTATTTTT-AGATAGGTTTGCAGGTTCGTTTCCAAAGTAACGATCTCCAAACGCGTGCTT----GATGGAGAC---ATCAA-AATTCAAAACCTGTCA--AAACGGATGTGCAAGACTGATGTCAGAGTAA-TTAAA--AAAATTT-AAAAATACT--TG-AAA-TAGATAGTATTG----TATTTGTTTTATCTGAAATAGGCATCT-TTTTTAGATAGGTTAATGAGTTTGTTTCCATAGTAA-CG-A--CATC--A-----AA--CAA--CC----C-CCT-A----AAACATCA--AAATC--TAAAG-------CCTGTCAAAAGGAAAA-TATGGGACTGACCCTAG-AATGAT--TAATC-AAATCAACAAACGAGTGAAATTGATAGCATTGGCTTTATTTGAGT-AC--AGTAAGTC--TTTATTTAGATAAATTTGTGAGTTTGTTTCCATGGTGACGA-CCAT-CAA-ACATACCCTTCATGGAAACATCATA--ATTC----------AAAATCTGTCTTAA-CAGAAGAATAAGACTGA--TGC-AAAGTAATTAAAATAT--TATGAAAA----T--ACTTAAAA--TAgccaatattcgccgcgtaatcttgtgtatgaactcgttgcgtttattatctccagtgaacgaggagttatttcattcattcgggtttgtaggctgtctttctacacgcatcagacgaatatgaataacccatgtttcaccgaaattattttgcggtatttatcactgacatttaacagaagtaat
gi|7 : tttatcggtaaaTGG--TGTGAGAGTAATTAAAA-AT--TCTAAAAA----T--GATTCAAA--TATAT---AGA-A-CATC-ATTCGTT--------TT--AA--------------CATAAAAAAG-GA----TTCTTTTAAAGATA-GTTTA--A-T--GGGTTCGCTTCC--A-TG-GTAACGAACGC-CAA--------ACATATACCCTTGCTG--GAGAGATCAT-AATTCACTGAGATTGGC--C--
gi|7 : tAGCTAGTTTT-GT-----GAGTTCGTT-TCCATG-GT-A-AAG-ATAATTAAAT--ATGGC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCA-TGAGGGACGAC-TGACACC------------AA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-AAAT-TTTA----TTTGTTTTATC-AAC--AAAAG-TACTTTT-T-AGGTTAGAT-GTA--GGATCGTTT-CCACGAAAAAA-ATAATAAATAAT-A-AAATAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-AG-AA-TCTG-TCAAAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgtgagttcgtttccatggtaaagataattaaatatggcattgccgaagacgaaatgtattcaaaacctgtcaaaagagcatgagggacgactgacaccaaaatctaaaaatgagcgaaatagataaaattttatttgttttatcaacaaaagtactttttaggttagatgtaggatcgtttccacgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|8 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTATGGGACTCA-ATCAGAGTAA-TTAAA--ATG-TCT-GAAAATGAG--TG-AAAATGGGTAGCACTGGAAGTATT-GTTT-A-CAGAAATGGACA--T-TTT---AATAG-TATGTGAGTTCGTTTCCATG-TAA-CGGA-CCATC--A-----AA--CATAACC----TACCTGA----AA-CACCA--AATTTA--------------CTG---AAA--------ATG--ACC-ACCTC-----TCATCTTAA-A-TGACTTGAAAAT-AGTTAAAT------TACTTAATTTAT--------C--AGAAAAGG--ATTATTTAGATAG--TTGCAGGTTCGTT-CCATG-TAACGA-TCAC-CAA-AAACGCGCTTGATGGAGACATCAAG--ATTC----------AAAACTTGTC-AAAGCGGAAGTTCAAGACTGA--TGTCAGAGTAATTAATAAAA--TGTAAAAA----T--ACCTGAAA--TAGAT---AGT-ATTGTA-ATT-GTT--------TT--A
gi|8 : ggataaatATCTTAAA-TG-ACTTGAAAA-TAGT--T-A--AAT--T--ACTTAATTTATCAGAAAAGGATTATTT---AGATAG--TTGCAGGTTCGTT-CCATG-TAACGATCACCAAAAACGCGCTT----GATGGAGAC---ATCAAGA-TTCAAAACTTGTCA--AAGCGGAAGTTCAAGACTGATGTCAGAGTAA-TTAAT--AAAATGT-AAAAATACC--TG-AAA-TAGATAGTATTG----TAATTGTTTTA
gi|9 : ggataaatgtatgggactcaatcagagtaattaaaatgtctgaaaatgagtgaaaatgggtagcactggaagtattgtttacagaaatggacattttaatagtatgtgagttcgtttccatgtaacggaccatcaaacataacctacctgaaacaccaaatttactgaaaatgaccacctctcCTGAAA-A-CGCC-------------------ATTCCTC-A--AAACCTG-TCAAAG-C-GAAG--TG-CAACCCTCTAA--C-A--------------CT--TGC-CCCGTAT--------------G--CCTGAA--------AATTTCAG-A-AAAAA---TACAGTCCGGGTGTTT-A---ATAGCTATACGCAGG-AAAAATATTGAG-CAA------
blockSeqs : C TC GT TTGTCT TC GT TATT G AA TCTAT TA TTT A A . C G T A T CCAT C GCATTTGT ACGG GT G TG G C GC TC A A C TG A ATAGT G GT A T G T T C CCCA CCC C AA GA AC T AA . TT TT T T GAG A A GAAG ACA TG A TCT TTAGA C A G CC GAAACAACATAGC G GTGG T AT T ACTGAAATTGACCT T ACAGAAGC G G C A T G CT ATA TT G TGATAGC TTGAGTACA T GGCAT T G G T TA . A CG TGAT AATAAAAAAA T GCG AA G TA C A A AA AAAA TA A AT CTT CG T T ATTTTAAATTAAAAACATCAAACAAA TA A TTTT C AAG T CAGA AG GAG C A AC GCAATAGGCGCTAT A AT G G CA AACTT TC AAA T C G CCTAGA AAATT ATTG A T TG A G T TT GAG TC T GTT T T TTTTA A C AG C CT . A CCTG T G C . T G T A GAC T A A TA C AAGAAATTC CC T CA G G GAGA G T . ATATTT A G TAG A A AA C CG A CC GTG C C TA T T CGG G G AATAGGACCATTAGTGGAT AGA A A CA GT C GT ACCGCCTCCCTCCCC C A CTTTTTTTTTTTGCG TCTAAAGC A G . GTTC G AA A ACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . G
blockSeqs : . . AT AATT . . TT A G . T . . . . A . . T . ACAT C CTT TG GT C C . C G . A A . . . GTTA G . T . A T T A . . C GA . GC A TT . . TA . T G . . . TAT AA G TA TTAGA A . . C AAACATACCTAT G . T . A ATAAAAA C AGGAAAA G A G A . G . TCA TT A AGTAGT TTTATCTG A GTC A G G . T . T TA TA . . TC AA A . G T A . . . C . . A . . TTAAAA G . AGAG . AA . CAC . AC . C TA CAAACAT T . A . . AC . TA . C . . GAAT AA . . T G G T TT . C . ATG T A . . . AA . A . . . . . . . . . T A . . A . TA . . . . . . . A G . . TC A . AA . . AG . G A C AAA C . T . . . . . . AA . . A . . . GA A . GGC . A . . AA A A . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . .
blockSeqs : . . AT CTTT . . CA C A . T . . . . A . . T . TCAT A CTG CA AC T A . C . . . A . . . TTA A . G . G T A T . . C A . G T CC . . AA . A T . . . TCA TA G T TGAG T . . T AAACATAACCTA G . C . A TAAAG T CAAAG G A G A . A . AA AA G AGGT CA T AGG A A A . C . C TA AG . . GG TT G . G T A . . . A . . T . . TCAA T . . . GA . CG . A . A CC CAAAC C . A . . A . A . C . . AA T . . . G T A T . . . AT T T . . . A . . . . . . . . . . . T A . . A . T . . . . . . . G A . . TA A . C . . AG . . T C AA T . T . . . . . . AA . . C . . . C T . G . G . . A G A .
blockSeqs : . AATT . . CA G A . A . . . . T . . A . TG G CT . AT C C . . . . . . . . TTA G . C . G T T A . A TG . . AA . T T . . . TCT TG A G TTA A . . C AACATCCTC G . . . T A . A . . . . . . . AT TG . T . A . . . . . . . A CG A . . CA T G . C A G . . . G . . C . . TTAT T . . . G . AA . A . A AC CAAC A . G . . . . T . T . . AA A . . . G G . T . . . . . T . . . C . . . . . . . . . . . . A . . A . . . . . . . . . A G . . A . . . . . A . . A C GT A . . . . . . . . AG . . C . . . C C . T . . . . A G A .
blockSeqs : . TG A T . . . . . . C . . T . C . . . C T C . . . . . TA . . G . . . TG . . AA . T G . . . CA A . T AA T . . . AAACAACCC . . . . A T . . . C . . A . . TTAA G . . . G . AA . A . A G . C . . . . . . . . A A . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . A . . . T . . . . . T . . A . A . . . . . . A . . . . . . A G . G . . . . . .
blockSeqs : C . . . A . . A . . G . T C . . . T . . . . . A A . . . A . . T . . . . . A . AA . A . . . . . . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . C .
blockSeqCons : AATT**** CT******* C* TTA**** AAACATAACCTA************* CGAA********** AAGN**** ACA* GGT**** CG********** CG A** A*** CAAAC*********** A****** AAAT** GT** TA A*** G* AG* C* AA** *** A*
originalCons : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAA-ATT--TCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTNC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGCGGGGNTC-ACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGG--T-A--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATCAA-A-TTCAAAACCTGTCA--AAGCGGAAGTACGGGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACN--TG-AAA-TAGATAGTATTG----TATTTGTTTTATCNGAAANGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-A-CCATC--A-----AC--C----CC----C-CCTGA----AAACATCA--AATTCA-TAAAG-------CCTGTCAAAAGGGAAG-TATGGGACTGACCTCAG-AGTAAT--TAA-A-AAATCTNAAAACGAGTGAAATAGATAGCATTGAATTTATT----T-AC--GGTAAGNC--TTTATTTAGATAGGTTTGCGAGTTTGTTTCCATGGTAACGA-CCAT-CAA-ANACGCCCTTCATGGAAACATCATA--ATTC----------AAAACCTGTC-AAA-CGGAAGTATAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCTAAAAA----T--ANTTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAGA-ATA-GGTTC--G-T--GAGTTCGTTTCC--A-TG-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--C--A----TG--TC--AAACGG-AACCGTAGGATT-GAC------ATAATAGC-A----TTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATAATATTTATTT---TAT--AGAAA-GGGTGA-T-TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCATTGAGG---GAC-TGACACCAAAAG-AAT-AAAA-AA---------TCTAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTT-T-A-GTTACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTC-A--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
finalCons : TGTATGGGACTCAG-AT--CAGAGTAATTAAAAAATT----CTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTNC-CTGGAAACACCATAATTCACTGAAATTGACCACCT-------CTCAAA-CG-AAGCGCGGGGNTC-ACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACT--GAAA-TAGGTTA----AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATCAA-A-TTCAAAACCTGTCA--AAGCGGAAGTACGGGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACN--TG-AAA-TAGATAGTATTG----TATTTGTTTTATCNGAAANGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-A-CCATCAAACATAACCTA-------------CCTGA----AAACATCA--AATTCCGAA----------CCTGTCAAAAAGN----TATGGGACTGACCTCAG-AGTAAT--TAAACA-AATCTNAAAACGAGTGAAATGGT----ATTGAATTTATCG----------GTAAGNC--TTTATTTAGATAGGTTTGCGAGTTTGTTTCCATGGTAACGA-CCAT-CAA-ANACGCCCTTCATGGAAACATCATA--ATTC----------AAAACCTGTC-AAA-CGGAAGTATAAGACTGG--TGTGAGAGTAATTAAAAAAT--TCTAAAAA----T--ANTTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TT--AA--------------CA-NAAAAAG-GA----TT-TTTTAA--ATA-GGTTC--G-T--GAGTTCGTTTCCA---TG-GTAACGANCGCCAAAC-----------ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--CA------TG--TC--AAACGG-AACCGTAGGATT-GAC------ATAATAGCAAAT--TTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATAATATTTATTT---TAT--AGAAA-GGGTGGT--TTTCAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--ATGTC-ATTGCCGAAGACG-A----AA-TG-T-ATT-CAAAACC-TGTCAAAAGA-GCATTGAGG---GAC-TGACACCAAAAG-AATAAAAA-AA---------TCTAAA--AA-T--GA-G-CGA---AATAG-ATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTT-TAG-GTTACAT-GTA--GGATCGTTTC-CACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTCAA--AA-CCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGCA-AAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAAATCCCTCGTTTCCAAAGAAATTATACTTTGCGCTATTTAGCACTGTACAATATTTTTACAGAAATAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTTGGCATGCAGATTTCGGACATTCAGCGTCATTTTCCCTGTCACAAACATGTGTAATGAAAATCCAAGACAAATTTAAGTGACAAGCGC
Unaligned ( gi|11 ): TACTTTGCGGTATTTATCACTGAATATTTCTACAAAAATAATAATACTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCCGGCCTGTAAATTTCGGAAATTCTGCATGATTTTCCGCTGTCACATACATGTGTAATAAATAAAAAATCCAACACAATTTAGTGGCAAACGCAACGTTACACGATGT
Unaligned ( gi|14 ): ACACGTATCGCCTTACTGCCGAAAATAAACCGTTCTGGAAAATCAAGTCCGGCATGTAGATTCGTACATGTTCCTGCCTGTGACTTTTTCCCTGTCACATACATGTGTAATAAAAACAAATTCCCACCACAAATTGAAAGGGCTCTAAAGTGGCAAGCGCAACGTACAACCGAGATGTT
Unaligned ( gi|23 ): AGATTTCAGACATTTCCCTGTCACATACATGTATAATAAATACAAATTTAAGCGGCAAGAGCAACGTGCACGATGCTCTCTCTCTCTCTCTCTCTCTCT
Unaligned ( gi|25 ): ACCTCTCATATCCACAGAAATGATACTTTGCGGTATTTATCACTGAATATCGTTACAGAAATAATAAATTCTATACA
Alignments
lowQualScore : 1 11 2222222 11 1111 11111 11 111 1111 222222222 2222 11 11 11 11 11 2222 2222222 111111 111 1 1111 1111 222 11 2222222 11 77777777777777777777777777777777777 11 1 777777777777777777777777777777777777777777 11111 11 11 3333333333 111 1111 111 22222222 44444444444444 222222 1111 1111 11 2222222222222222 3333333 333 111 1 22222 11 111 11 1111 11111 1111 111 1111 111111 111 1111 222222 222 11 11 111 111 4444444444444444444 4444444444444444 44444444444444444 22222222 1 111 11111 8888888888888888888888888888888888888888888888888888888888888888888888 1
lowQualScore : 0 33 44 5555555 11 99 2222 1 99 44444 00 111 6 6 6 1 6 5 1 5 2222 6 555555555 2222 44 1 11 6 6 55 99 0 3 3 3 11 8 0 11 11 1 1 11 8 1 44 3 0 1111 5555555 999999 4 77 6 999999 6 3 000 1 2 2222 1 555 88 1 1111 88888 0 3 6 6 1 6 1 000 33 0000000 0 3 11 8 33333333333333333333333333333333333 5 3 5 3 8 1 11 666 8888 3 222222222222222222222222222222222222222222 1 88888 6 0 3 3 0 8 11 8 1 77 0 6 11 5555555555 0 8 222 77 3 99 6 3 2 66 0 0000 66 1 66 000 77 5 5 00000000 88888888888888 77 5 444444 5 6666 5 5555 77 0 99 5 8 33 6666666666666666 1 99 7 6 99 5555555 111 6 1 6 111 3 55555 6 6 55 1 44 6 66 444 99 8 3333 8 7 3 66666 6 6 888 6 99 6 6 5 2222 666 5 5 0 5 5 8 5 000 5 1 3333 666666 000 77 6 99 6 6 3333 77 6 6 888888 3 6 777 6 5 6 6 55 3 33 222 1 6 99 8 8 444 5 5 4444444444444444444 1 5 5 99 99 6 99 4444444444444444 1 6 22222222222222222 44444444 2 6 111 55555 1 88 8 7777777777777777777777777777777777777777777777777777777777777777777777 0 3 6
lowQualScore : . .. .. ....... .. .. .... . .. ..... .. ... . . . . . . . . .... . ......... .... .. . .. . . .. .. . . . . .. . . .. .. . . .. . . .. . . .... ....... ...... . .. . ...... . . ... . . .... . ... .. . .... ..... . . . . . . . ... .. ....... . . .. . ................................... . . . . . . .. ... .... . .......................................... . ..... . . . . . . .. . . .. . . .. .......... . . ... .. . .. . . . .. . .... .. . .. ... .. . . ........ .............. .. . ...... . .... . .... .. . .. . . .. ................ . .. . . .. ....... ... . . . ... . ..... . . .. . .. . .. ... .. . .... . . . ..... . . ... . .. . . . .... ... . . . . . . . ... . . .... ...... ... .. . .. . . .... .. . . ...... . . ... . . . . .. . .. ... . . .. . . ... . . ................... . . . .. .. . .. ................ . . ................. ........ . . ... ..... . .. . ...................................................................... . . .
lowQualScore : 0 88 88 2222222 00 22 0000 7 66 33333 22 777 7 7 7 0 7 7 0 7 1111 7 888888888 2222 33 0 88 7 7 88 22 8 2 2 2 22 0 8 00 00 0 0 88 0 4 33 5 8 2222 3333333 000000 0 00 7 555555 7 5 222 4 3 1111 4 444 33 7 4444 44444 7 0 7 7 0 7 7 222 88 2222222 8 8 00 0 44444444444444444444444444444444444 0 8 0 8 0 4 00 666 2222 2 444444444444444444444444444444444444444444 4 00000 0 8 2 2 8 0 88 0 0 88 6 0 00 0000000000 8 0 666 44 2 22 7 6 2 99 9 6666 99 0 99 000 44 7 7 77777777 33333333333333 77 7 444444 7 7777 7 7777 99 1 33 7 4 55 8888888888888888 0 22 8 7 22 0000000 444 7 0 7 777 8 55555 7 7 88 0 88 0 44 000 00 0 4444 0 3 5 77777 7 7 333 7 22 7 7 7 1111 000 7 7 7 7 7 4 0 000 7 4 3333 444444 000 99 7 22 7 7 3333 77 7 7 000000 2 7 555 7 2 7 7 88 5 33 888 0 7 88 0 0 000 7 7 3333333333333333333 4 7 7 22 22 7 22 8888888888888888 0 7 55555555555555555 22222222 0 7 777 88888 0 88 0 0000000000000000000000000000000000000000000000000000000000000000000000 7 3 7
consensus : TGTATGGGACTCAG-AT--CAGAGTAATTAAAA--AA---TTCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTNC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGCGGGGNTC-ACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACTGAAA-TAGGTTA--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTCGCGGGTTCGTTTCCATGGTAACGATCNCCAAACGCGCGCTC----GATGGAGAC---ATC-AAATTCAAAACCTGTCA--AAGCGGANGTACGGGACTGATNTCAGAGTAA-TTAAA--AANATCT-AAAAATACN--TGAAA-TAGATAGTATTG----TATTTGTTTTATCNGAAANGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-ACC-ATCAAACATAACCTA-CCT------GAAAACATCAA--A-TTC--TAAAA-------CCTGTCAAA-A----AG-AAATATGGGACTGACCTCAG-AGTAAT--TAAACAAATCTNAAAACGAGTGAA----ATA----GCA---TTGAATTT-----ATTT-----C-AGTAAGNC--TTTATTTAGATAGGTTTGCGAGTTTGTTTCCATGGTAACGA-CCAT-CAA-ANACGCCCTTCATGGAAACATCATAAT--TC----------AAAACCTGTC-AAA-CGGAAGTATAAGACTGGT--GTGAGAGTAATTAAAAAAT--TCTAAAAA----T--ANTTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TTAA--------------CA-NAAAAAG-G-A----TT-TTTTA-A--ATAG-GTTCG--TG--AGTTCGTTTCCA--TG-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--C--A----TGTCT-AAACGG-AACCGTAGGATTG-AC---ATAATAGCGAATTTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATAATATTTATTT---TAT--AGAAA-GGGTGGT-TTT-CAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--A-TGTC-ATTGCCGAAGACG-A----AAT-G-T-ATT-CAAAACCT-GTCAAAAGA-GCATTGAGG---GACT-GACACCAAAAGAA-TAAAA------AAATC---TAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTTTAGGTT-ACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTCA-AAACCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
Reference ( family-683 ) : TGTATGGGACTCAG-AT--CAGAGTAATTAAAA--AA---TTCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTCG--TTTTGACGGAAATGG-ACA-----TTTTTT-GATA---GGTTCGTGAGTTCGTTTCCA-T-GGTAAC-GACC-ATCAAAC-ATACCCTNC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CG-AAGCGCGGGGNTC-ACA-TCA--AG--AGTAATAAAAAATATCTTAAAATG-ACTGAAA-TAGGTTA--AATGAT--ACTTAATTTATCAGAAAANGATCATTTTT-AGATAGGTTTGCGGGTTCGTTTCCATGGTAACGATCACCAAACACGCGCTT----GATGGAGAC---ATC-AAATTCAAAACCTGTCA--AAGCGGAAGTACGGGACTGATNTCAGAGTAA-TTAAA--AAAATCT-AAAAATACN--TGAAA-TAGATAGTATTG----TATTTGTTTTATCNGAAANGGGCA--T-TTTTTAGATAGGTTNATGAGTTCGTTTCCATGGTAA-CG-ACC-ATCAAACATAACCTA-CCT------GAAAACATCAA--A-TTC--CGAA--------CCTGTCAAA-A----AG---NTATGGGACTGACCTCAG-AGTAAT--TAAACAAATCTNAAAACGAGTGAA----ATG----GTA---TTGAATTT-----AT-------C-GGTAAGNC--TTTATTTAGATAGGTTTGCGAGTTTGTTTCCATGGTAACGA-CCAT-CAA-ANACGCCCTTCATGGAAACATCATAAT--TC----------AAAACCTGTC-AAA-CGGAAGTATAAGACTGGT--GTGAGAGTAATTAAAAAAT--TCTAAAAA----T--ANTTGAAA--TATAT---AGC-A-TATC-ATTCGTT--------TTAA--------------CA-NAAAAAG-G-A----TT-TTTTA-A--ATAG-GTTCG--TG--AGTTCGTTTCCA--TG-GTAACGANCGC-CAA--------AC--ATACCCTTGCTG--GAGACATCAT-AATTCACTGAGATTGGC--C--A----TGTC--AAACGG-AACCGTAGGATTG-AC---ATAATAGCAAATTTT-A---AAAAAGTC-AAA-AAT--GAGTAACATGGATAGCATAATATTTATTT---TAT--AGAAA-GGGTGGT-TTT-CAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--A-TGTC-ATTGCCGAAGACG-A----AAT-G-T-ATT-CAAAACCT-GTCAAAAGA-GCATTGAGG---GACT-GACACCAAAAGAA-TAAAA------AAATC---TAAA--AA-T--GA-G-CG---AAATA-GATA-GAAT-TTAT----TTTGTTTTAGC-AG---AAAAG-TACTTTTTAGGTT-ACAT-GTA--GGATCGTTT-CCACGGTAACA-ATAAT-AATAAA-A-AAAAAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTCA-AAACCTG-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTGAGGA-AAAAA---CACAGTTCGGGTGTTT-A---ATAGCTATACGCAGC-AAAAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGC-CTAGCTCAGACGGAATA
gi|1 : TGTATGGGACTCAG-AT--CAGAGTAAATAAAA--AAATGCTCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTTG--TTTTGACAGAAATGG-ATA-----TTTTTT-GATA---GGTAAATGAGTTCGTTTCCA-T-GGTAACCGACC-ATCAAAC-ATACCCTAC-CTGGAAACACCATAATTCACTGAAATTGACCAC-C-----T-CTCAAA-CA-AAGCGTAGAAAT--ACA-TCA--AG--AGTAATAAAAAATATCTTAAA-TG-ACTGAAA-TACGT-A--AATGAT--ACTTAATTTATCAGAAAATAATCATTTTT-AGAAAGGTTTGCAGGTTCGTTCCC--GGTAACGATCACCAAACACGCGCTT----GATAGAGAC---AT--AAATTCAAAACCTGTCA--AA-CGGAAGTACAA-ACTGATTGGAGAGTAAATTAAA--AAAATCT-AAAAA-ACT--TGAAA-TAGATTGTATTG----TATTTGTTTTATCTGAAAAGGGCA--T-TTTTTAGATAGGTTGATGAGTTCGTTTCCATGGT-A-CG-ACC-ATC-AAC----CCCC-CCT------AAAAACATCAA--A-TTC--AAAG--------CCTGTCAAA-A----GGGAAATATGTGACTGACCCTGG-AATAAT--TAATC-AATCAAAAAAC-AGTGAA----TTGTAAAGCA---TTGAATTT-----ATTTA----C-AGTAAGTC--TTTATTTAAATAAGTTTGTGAGTTTGTTTCCATGGTAACGG-CCAT-CAATATA---CCTTCCTAAAAACACCATAAT--TC----------AAAGCCTGTC-AAA-AAGAAGTATAA-ATTGGT--ATGGGAGTATCTAAAAAAT--TCT-AAAA----T--AATTGAAA--TCTAT----GC-A-TATC-ATTCGTT--------TTAG--------------CA-TAAAAAG-G-A----TT-TTTTA-AACATAG-GTTCG--TG--AGTTCGTTTCCAT-TG-GT-ACGAACGC-TAA--------AC--ATACCCATGCTG--GATACATCAT-AA-TCACTGAGATTGGC--CATA----TGTC--TAACGG-AACCGTAGGATTG-AC---ATAATAGCA---TTT-C---AAAATGTC-AAA-AAT--GAGTAACA-GGATAGCATAATATTTATTT---TCT--AGAAA-GGGT-GT-TTT-CAGCTAGTTTTTGT-----GAGTTCGTT-TCCATG-GT-A-ACG-ATAATCAAAT--A-TGTCAATTGCCG-AGACG-A----AAT-G-T-ATTACAAAACCT-GTCAAAAAG-AAATCGAGC---GACT-GACACCAGAAGAA-T-AAA------AAATC---TAAA--AA-T--GA-G-CG----AGTAGGATA-GAATATTAT----TTTGTTTTAGC-AG---AAAGG-TTCTTTTTA-GTT-ACAT-GTA--GG-TCGTTT--CACAGTAACA-ATAAT-GATAAA-A-AAAAGGC---TTGCTGAAA-A-CGTC-------------------AT---------ACC-G-TCAAAAAC-GAAG--TG-CAACCCTCTAA--C-A--------------CCCCTCC-CCCTTGT--------------G--CCTGAA--------AATTTAAGGA-AAAAAAACCACAGTTCGGGTGTTT-A---ATAGCTA-ACGCAGC---AAATATTGAG-CAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACTCTAGCTCAGATGGAATA
gi|12 : GCTGAAAGA-CGTC-------------------ATTCCTCAGAAACCTG-TCAAAAAA-GAAA--TGCCAACTCTCGTA--C-ACCGCCTCCCTCCCCCCCCCCC-CCCTTGT--------------GGCCCTGAA--------AATTTGAAGA-AAAAA---CACAGTTCGGGTGTT------ATAGCTATAC-CAGC-AAAAATATTGAG-CAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAC-CTAGCTCAGACGGAATA
gi|13 : ttgTATTGGACTCAGCACTCCAGAGTA--TAAAATTGT---CTCTGAAAATGAGTGAAATGTCGGTAGCACTGG--ATTTT--TTTTGACAGAAATGGAACA-----TTTTTT-GAT----GGTGCGTGAGTTCG-TTCCA-TAGGTAAC-GACC-ATCAAAC-ATACCCTACTCTGGAAACACCATAATTCACTGAAATTGACCAC-CT----T-CTCAAA----AAGC-CGGGGGTC-ACA-TCAGCAG--ATTAATAAattatatgaataacccctcgt
gi|15 : tGTAGTTCAAA--AA---TTCTAAAAATGAGAGAAATA--AATAGCATTGT--ATTCA--TTTTAACGGAATTTG--CA-----TTTTGTAGGTA---GATTCGTGAGTTCGTTCCCA-T-GTTAAC-GAAA-ATCAAAC-ATACCCTTC-CTGGAGACAT--GGATTCTCTGAAATT
gi|16 : aaggatgcgtgaggctgacaataaagttactTAGTACCGGGTATTCA--TTTTCATGGAAAAGG-GCA-----TTTCT--AACATTTGGTTCATGAGTTCATTTCCA-T-GGTAAC-AAAC-ATCAAACTATAACCTTG-CTGG----------ATTCATTGAAATTGACCATGCATTTGT-CTAAAA-TG-AAGTGTGGGACTA-GTA-T-A--AG--AGCA
gi|17 : AAAC-ATACCCTAC-CTGGAAATGACATAATCCACTGAAATTGA------------------------AGTGTGAGGTTC-ACA-T-A--AG--AATAATAAAAAAAAACTTTATATG-TCTGAAA-AGGGTTA--AAAGAT--ACCTAATTTAT---AAAAAGAATAAGATT-AGAAAGGTTCACGGGTTCGTTTCCAt
gi|18 : AGAGTAATTAAAAAAT--TCTAAAAAAAAAT--AATTGAAA--TATAT---AGA-A-TAGC-ATTCGTT--------TCAA--------------CG-GAAAAAG-G-ATTTTTT-TTTTA-G--ATAA-GTTCG--TG--AGTTCGTTTCCA--TG-GTAA
gi|19 : cTGTATGGGACTCAG-AT--CAGAGTAATTAAAA--CT---TTCTGAAAATGAGTGAAATG--GGTAGCACTGG--ATTTG--TTTTGACAGAAATGG-ACATCTATTTTTTT-GATA---AGTTC
gi|2 : GGATGTATGGGACTTCAATCAGAGTAA-TTAAA--ATTTTCT-AAAAATGAG--TGAAAATGGGTAG-ACTG----GATTTGTTTTGACAGAAATGGACA--TATTTTTA--TAGGTTCGTGAGTTCGTTTCCATGGTAA-CA-ACCCAT-AAACAT--CCTC-CCT------GGAAACA-CAATAA-TTCACTGAAATTGACCTCCTCTCAAACA----AA---GCGTGGGGTTCACATCAGTAGTAAT--AAAATATATCTTAAAATGACTAAA----ATA----G-G---TT-AAT-------------------GTAA-----TTT-TTTAGATAGGTTTGC-AGGTTGTTTCCATGGTAACGATCCA--CAA-AAACGCGCTTGATGGGGACATCA-AAT--TTAATAAAAAAAAAAACC-GTC-AAA-TCGAAGAACAAGACTGAT--GTCAGAGTAATT-AAAAAT--TCTAAAAA----T--ACTTAAAA--TAGAT---AGT-A-TGGT-ATTTGTT--------TTAT--------------TC-TGAAAAG-GCA----TT-TTTAA-A--ATAG-GTTAA--TG--AGTTTGTTTCCA--TG-GT-ACGAACGC-CAA--------AC--ATAACCTTGCTG--GAGACATCAT-AATTTACTGAGATTGGCCAC--A----TGTCT-AAACGG-AACCGTAGGATTG-AT---ATAATAGC-AATTTT-----AAAAAGT--AAA-AAT--GA-TAACATGGATAGCATAATATTTATTT---TATC-AAAAA-GGGTGAT-TTT-CAGCTAG-TTTTGT-----GAGCTCGTT-TCCAT--GT-AGACG-ATAATC-AAT--A-TGTC-ATTGCCGAAGACG-A----AAT-G-T-ATT-CAAAACCT-GTC-AAAGA-GCA-TGAGG---GACT-GACACCAAAAGA---AAAA------AAATC---TGAA--AATT--GAGG-CG---AAATA-GATA-GAAT-TTA-----TTTGTTTTAGC--G---AAAAGATACTTTTTAAGTT-ACAT-GTA--GGATCGTTT-CCACG--AACA-ATAA-----AAA-A-AAAAAAC---TTGCTG-AA-A-CGTC-------------------GTTCCTCA-AAACCTG-TCAAAAA---AAG--TG-CAACCCTCTAAGTC-C--------------CCCCCAC-CCCCTGT--------------G--CCTGAA--------AATTTGA-GA-AAAAA---CA-AGTTCGGATTTTTAA---ATAGTTATACGCAGCAAAAAATATTGAGANNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC-CTA-CTCAGACGGA
gi|20 : GACTGATTTCAAAGTAA-T-AAA--AATATCTTGAAAATACT--GGAAA-TATATAGTATTG----TATTTGTTTTATATGAAAA------------------AGGTTAATGAGTTCGTTTCCATGGTtatgaataacccctcgttcaacagaaattatactttgcggtattatcacatgaatatttctacagaataataaatactgtacagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagtctcagacatttttctctgtcacatacatgtgtaataaaaacaaatccaaca
gi|21 : acaataaGAAA-TAGATAGTATTG----TATTTGTTTTTTCAGAAAAAGGCA--T-TTTTTAGATTGGTTTATGTGTTCATTTCCATGGTAA-TG-ACC-ATCAAACAT-ACCTATCCT------GAA
gi|22 : A-TAGGTTA--AATGAT--ACTTAATTTATCAAATAATGATCATTTTT-AGATAGATTTTCAGGTTTGTTTCCATGGTAACGATCCCCAAAAACGCGCTT----GATGG
gi|24 : atTGTATGAAACTGAC-AT--CAGAGTAATTAAAA--AA---TTCTGAAAATGAGTGAAATG--GATAGCACTGA--ATTTATTTTTTAACAGAAATTG-ACA-----TTTT
gi|26 : aggaGAAG-A----AAT-A-T-ATT-CAAAACCT-GTCAAAAGA-GCATTT-GT---GACT-GACACCAAAAGAA-TAAAA------AAATC---TAAA--
gi|27 : GG-AACCGTAGGATTG-AC---AAAATAGC-AATTTA-A---AAAAAGAC-AAA-AAT--GAATAAAATGG
gi|3 : TTTCAAGAAAATGA-TCA-----TTTTAA-GATA---GGTTTGCAGGTTCGTTTCAAAT-GGTAAA-GATCGACCAAAA-ATAGCGTTG-ATGGAGACAC------TCA---AAGTTCAACAC-C-----TGTTCAAAACGGAAGTACAAGACTTGATAGTCAG-AGTCAGTAA-AAAAAAT-TCCAAAAATGCGTTGAAAATGGGATAGTAATAATGTATTTGTTTTATCTGAAAGGG--CATTTTTTAGATAGGTTAGTGAGTTCGTTTCAATGGTAACGACCATCAACCCCCCCCCCCCCAAAAAAAAACCCCATC-AAAATCAAAGTCTGTCAGAAAG-GGAAATATGGGACTGACCCTAGA--AA-TTAATTTCAAATCA-AAAAAAACGAGTGAAA-TTGATAGCATTG----AAT-----TTAT-----------A--G-TTTTGAG------------GTTCTTTCCCATGGTAAACG-ATC-AACGAA-ACAACATA-GCTTTGAGTGGAGACATCAA--AATTA--TAAAAA------CCTGCCAAA-ACAGAAG---CTATAGG-CTGAATTCAG-AGCAAT--TAAAAAAA-ATTACAATAATTGAA----ATA----GTAGTATTGTATTTGTTTTAT-------CTGGAAAGGCATTTTTTTTTTAT-GGTTCGTGAGTTTGTTTCCATGGTAACGG-CCATATAA-ATATACCCTTCCTAAAAACACCATGATATTC----------AAAGCCTGTC-AAA-GGGAAGT-TAAAATTGGTATGTGAGAGTAATTTAAAAAA--TCTGAAAA----T--AATTGGAAATTATGT---AGC-A-TATCTATTCGTT--------TTAAAA------------CA-TAAAAAG-A-AAGAGTT-ATTTA-G--ATATTGTTCAGATAGAAGTTCGTTTCCGAGTGCGCCACGATAGCGCAATAGGCGCTAT--ATTTCCTTGCTGATGA-ACATCATGAATTCACTGAGATGGGC--C--AC---TGTCTCAAACG--AACCGTAGGATTGGAT---ATAATAGCAAATTTTTA---AAAAAGTC-AAATAATTGAAGTAACATG-ATAGCA--ATATT-ATTT---TAT--CAGAC-GGGTGGT-TTTTCAGCTAGTTTTAGT-----GAGTTCGTTATCCATG-GT-A-ACGCATAATCAAAT--AATGTC-ATTGCCGAACGCG-A----AATTG-TCATT-TAAAACCTTGTCAAAAGA-GC--TAAGG---GACTTGACACCAAAAGAAATAAAACAAAAGAAATTCTTTAAACCAA-TCAGA-G-CG---GAATA--ACA-GAAT-TT-T----TTTGTTCT-GCGAG---AAGAG-TACTTTTTAGGTT-ACAC-GCACGGAATCGTTTCCCACGA-AACA-ATAAT-AA
gi|4 : ataAAAAAG-G-C----AT-TTTTA-A--ATAG-GTTAA--TG--AGTTTG-TTCCA--TG-GTAACGACCAT-C-A--------AC--ACACCCT-------AAAACATCAA-AATTC-C--AAA---GC--C-------TGTCAAAAAAGGTAAATATACGACTG-ACCCTAGAATAATCAATC----------AAATCAAAA-AAC--GAGTGAAATTGTTAGCATTGAATTTATTTGAGTAC--AGCAA-GTCTA----TT-AAAATAA--TTTGT-----GAGTTCGTT-TCAATG-GTAA-ACG-AT-ATCAAAT--A-TGTC-ATTGCCGAAGACGAA----AAT-A-T-ATT-CAAAA-CT-GTCAAAAGAGGCATTT-GG---AACT-GACACCAAAAGAA-TAAAA------AAATC---TAAA--AA-T--GA-G-CG---AAATA-GGTA-GAAT-TTTC----ATTGTTC--GC-AGAA-AAAAG-TAC-TTTTATATTGACATCGTA--GATTCGTTT-CCACGGT---A-ATAAT-AATAAA-ATAAAAAAC---TTGCTGAAA-A-CGT---------------------TTCCTCA-AAATCTG-T-AAAAAC-GAAG--TG-CAACCCTCTAT--C-C--------------CCCCTTT-CCCTTGT--------------T--CCTGAA--------AATTTGA-GA-AAAAA---CACAGTTCGAGTGTTT-A---ATAGTTTTACACAGC-AAAAATATTGAG-CAA------aa
gi|5 : tctgaTAATTTAAAGATAATCTAAAAA----TTAAGTTGAAT--TTTATCTTAGCGA-TATC-ATTCGTTATTTTAAATTAAAAACATCAAACAAACA-GAAAAGGAG-A----TT-TATTAGA--ATAG-GATCAC-TG--AGTTCGTTTCAAC-TG-GTAAAGAG--------------------TAATTTTGCTG--AGAACAT--T-GATTCACTGAGATTGGC--C--AACTTTGTC--TAATGG-AAC-GTGAGATTG-GA---ATGTTAGCGAATTTT-ATTGAAAAAGTC-AAA-AATT-GAGTACC-TGGATCGCATGA-AT--ATTT---TATTCAGAAATGGGTGATGTTT-CAGCT-GTTGTTGTTTTTAGAGTT-GTT-TTCATGCGT-C-AAG-ATAATGAAATCTA-TGTC-ATTGCC-AGGACG-ACCTGAAT-GGT-ATT-CAAA---T-GT-AAAGAA-GCATTGAGG---GA-T-GACAC----------AGGG------AAAT-------A--AA-T--GA-GGCGGAGAACTA-AATATG--T-TTATATTTTTTGTTTTAGC-AGTAGAAAAG-TACTTTTTTGA-T-ACCT-GTAG-GGATCATTT--CATGGTGATACATA---GATAAATA-AAAGAACCGGTTGCAGAAA-AGCTTCAATAGGACCATTAGTGGATATTCC-CG-AAACCTGATCAAAAACAGAAAGTTG-AAACACGCTTA--CGA--------------CGCCTCCAACCTTGTCTTTTTTTTTTTGCG--CTTGAATCTAAAGCAATGAGAAGAGAAAAA---AACATTTCGGGTGTTT-GTTCAT-GTTATACGCAGacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccctagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactttgcggtatttatcactgactattttcacagtataataaaaatactgtacagcgctgtcttaaaacaataatctttgaaacaagaaaaattcatctcatcctctaaaattgaagtaacatacgcaagtcgcttactgcgaaataaacgtgggaatcaagtcccggtatgtagatttcggacattccatgtcacatacatgtgtaataaaaaacaatccacacaaatttaaagtggcaagcgcaacgtaca
gi|6 : TGAGTTTGTTTCCA-T-GATAAC-GACC-ATAAACC-ATTCCCTAC-CTACAAACATCATAATTCACTGAAATTGAGCAC-C-----T-CTCAAA-CA-AAGCATAGGGTTC-ACA-TCA---G--AGTAATAAAA-ATATCTTAGAATG-ACTGAAA-TAGGTTA--AATGAT--ACTTAATTTATCAGAAAACGATTATTTTT-AGATAGGTTTGCAGGTTCGTTTCCAAAGTAACGATCTCCAAACGCGTGCTT----GATGGAGAC---ATCAAAATTCAAAACCTGTCA--AAACGGATGTGCAAGACTGATGTCAGAGTAA-TTAAA--AAAATTT-AAAAATACT--TGAAA-TAGATAGTATTG----TATTTGTTTTATCTGAAATAGGCATCT-TTTTTAGATAGGTTAATGAGTTTGTTTCCATAGTAA-CG-A-C-ATCAAAC--AACCC--CCT-------AAAACATCAA--A-ATC--TAAAG-------CCTGTCAAA-A----GGAAAATATGGGACTGACCCTAG-AATGAT--TAATCAAATCAACAAACGAGTGAAATTGATA----GCA---TTGGCTTT-----ATTTGAGTAC-AGTAAGTC--TTTATTTAGATAAATTTGTGAGTTTGTTTCCATGGTGACGA-CCAT-CAA-ACATACCCTTCATGGAAACATCATAAT--TC----------AAAATCTGTCTTAA-CAGAAGAATAAGACTGAT--GC-AAAGTAATTAAAATAT--TATGAAAA----T--ACTTAAAA--TAgccaatattcgccgcgtaatcttgtgtatgaactcgttgcgtttattatctccagtgaacgaggagttatttcattcattcgggtttgtaggctgtctttctacacgcatcagacgaatatgaataacccatgtttcaccgaaattattttgcggtatttatcactgacatttaacagaagtaat
gi|7 : tttatcggtaaaTGGT--GTGAGAGTAATTAAAA-AT--TCTAAAAA----T--GATTCAAA--TATAT---AGA-A-CATC-ATTCGTT--------TTAA--------------CATAAAAAAG-G-A----TTCTTTTA-AAGATAG-TTTAA--TG--GGTTCGCTTCCA--TG-GTAACGAACGC-CAA--------ACATATACCCTTGCTG--GAGAGATCAT-AATTCACTGAGATTGGC--C--
gi|7 : tAGCTAGTTTT-GT-----GAGTTCGTT-TCCATG-GT-A-AAG-ATAATTAAAT--A-TGGC-ATTGCCGAAGACG-A----AAT-G-T-ATT-CAAAACCT-GTCAAAAGA-GCA-TGAGGGACGACT-GACACC------------A------AAATC---TAAA--AA-T--GA-G-CG---AAATA-GATA-AAAT-TTTA----TTTGTTTTATC-AAC--AAAAG-TACTTTTTAGGTT-AGAT-GTA--GGATCGTTT-CCACGAAAAAA-ATAATAAATAAT-A-AAATAAC---TTGCTGAAA-A-CGTC-------------------ATTCCTCA-GAATCTG-TCAAAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctagttttgtgagttcgtttccatggtaaagataattaaatatggcattgccgaagacgaaatgtattcaaaacctgtcaaaagagcatgagggacgactgacaccaaaatctaaaaatgagcgaaatagataaaattttatttgttttatcaacaaaagtactttttaggttagatgtaggatcgtttccacgaaaaaaataataaataataaaataacttgctgaaaacgtcattcctcagaatctgtcaaaa
gi|8 : ttggtgtgagagtaattaaaaattctaaaaatgattcaaatatatagaacatcattcgttttaacataaaaaaggattcttttaaagatagtttaatgggttcgcttccatggtaacgaacgccaaacatatacccttgctggagagatcataattcactgagattggcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTATGGGACTCA-ATCAGAGTAA-TTAAA--ATG-TCT-GAAAATGAG--TGAAAATGGGTAGCACTGGAAGTATT-GTTT-A-CAGAAATGGACA--T-TTT---AATAG-TATGTGAGTTCGTTTCCATG-TAA-CGGACC-ATCAAACATAACCTA-CCT------GAAA-CACCAA--A-TTT-----A--------C-TG----A-A----A------ATG--ACC-ACCTC-----TCATCTTAAATGACT-TGAAAAT-AGTTAA----AT------TA---CTTAATTT-----AT-------C-AGAAAAGG--ATTATTTAGATAG--TTGCAGGTTCGTT-CCATG-TAACGA-TCAC-CAA-AAACGCGCTTGATGGAGACATCAAGAT--TC----------AAAACTTGTC-AAAGCGGAAGTTCAAGACTGAT--GTCAGAGTAATTAATAAAA--TGTAAAAA----T--ACCTGAAA--TAGAT---AGT-ATTGTA-ATT-GTT--------TTA
gi|9 : ggataaatCTGAAA-A-CGCC-------------------ATTCCTCA-AAACCTG-TCAAAG-C-GAAG--TG-CAACCCTCTAA--C-A--------------CT--TGC-CCCGTAT--------------G--CCTGAA--------AATTTCAG-A-AAAAA---TACAGTCCGGGTGTTT-A---ATAGCTATACGCAGG-AAAAATATTGAG-CAA------
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAAATCCCTCGTTTCCAAAGAAATTATACTTTGCGCTATTTAGCACTGTACAATATTTTTACAGAAATAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTTGGCATGCAGATTTCGGACATTCAGCGTCATTTTCCCTGTCACAAACATGTGTAATGAAAATCCAAGACAAATTTAAGTGACAAGCGC
Unaligned ( gi|11 ): TACTTTGCGGTATTTATCACTGAATATTTCTACAAAAATAATAATACTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCCGGCCTGTAAATTTCGGAAATTCTGCATGATTTTCCGCTGTCACATACATGTGTAATAAATAAAAAATCCAACACAATTTAGTGGCAAACGCAACGTTACACGATGT
Unaligned ( gi|14 ): ACACGTATCGCCTTACTGCCGAAAATAAACCGTTCTGGAAAATCAAGTCCGGCATGTAGATTCGTACATGTTCCTGCCTGTGACTTTTTCCCTGTCACATACATGTGTAATAAAAACAAATTCCCACCACAAATTGAAAGGGCTCTAAAGTGGCAAGCGCAACGTACAACCGAGATGTT
Unaligned ( gi|23 ): AGATTTCAGACATTTCCCTGTCACATACATGTATAATAAATACAAATTTAAGCGGCAAGAGCAACGTGCACGATGCTCTCTCTCTCTCTCTCTCTCTCT
Unaligned ( gi|25 ): ACCTCTCATATCCACAGAAATGATACTTTGCGGTATTTATCACTGAATATCGTTACAGAAATAATAAATTCTATACA