lowQualScore : 1111111111111111111111111111111111111111111111111111111 111111111111111
lowQualScore : 1 1111 1 1 22222 111 11 11 1 1 333333 22222 333 444 44444444444444444444444444444 22 1111 1 33 2 1111111 555555555555 4444444444 22 333333333 8888888 2 1 111111 1 1111111 1 7777777777777777777777777777777777777777777777777777777 1111 333 2222 111 33333 2222 111 1111 111111111111111 5555555 222 2222 111 11 1 1 2222 11111 111 3333 2 333 222 1 333 11 1 1 1111 2222 1 1 33333333 3333 1 2222222222 1 1 11 1 111
lowQualScore : 3 6 99 9999 9 6 3 22222 111 00 55 3 99 99 7 6 6 7 0 555555 0 66 77 77 99999 111 666 000 33 33 2 7 2 2 55555555555555555555555555555 333 333 4 2 2 555 2 3 44 2 2222 5 999 11 5 888 6 8 4444444 6 6 0 6 6 6 444444444444 1111111111 99 0 0 777777777 9999999 0 0 8 6 8 5 7 5 99 111111 6 99 6 6 3 3 0 5 8888888 0 99 6 6 1111111111111111111111111111111111111111111111111111111 6 4444 3 444 3 7 2222 6 222 6 00000 5 777 4 66 1111 0 5 6 6 6 6 6 666 3333 888888888888888 1 8 0 8 8 8 0 8 8 2222222 8 8 0 1 222 99 6666 000 99 9999 77 2 5 8 6 0 6 3333 5 88888 666 99 3333 6 1 444 777 2 0 666 33 0 0 5555 1 8888 6 6 5 7 7 7 3 88888888 1 8888 3 88 4444444444 7 3 3 44 3 7 666
lowQualScore : . . .. .... . . . ..... ... .. .. . .. .. . . . . . ...... . .. .. .. ..... ... ... ... .. .. . . . . ............................. ... ... . . . ... . . .. . .... . ... .. . ... . . ....... . . . . . . ............ .......... .. . . ......... ....... . . . . . . . . .. ...... . .. . . . . . . ....... . .. . . ....................................................... . .... . ... . . .... . ... . ..... . ... . .. .... . . . . . . . ... .... ............... . . . . . . . . . ....... . . . . ... .. .... ... .. .... .. . . . . . . .... . ..... ... .. .... . . ... ... . . ... .. . . .... . .... . . . . . . . ........ . .... . .. .......... . . . .. . . ...
lowQualScore : 3 7 22 7777 2 7 3 55555 777 22 88 3 22 22 3 7 7 7 1 777777 6 77 99 99 44444 555 555 666 22 22 4 1 4 4 00000000000000000000000000000 777 777 2 1 1 888 1 1 33 5 1111 0 444 00 7 000 0 6 4444444 7 7 3 7 7 7 222222222222 8888888888 44 8 8 888888888 0000000 8 4 0 6 0 7 3 5 22 888888 7 22 7 7 5 2 8 0 6666666 0 22 7 7 0000000000000000000000000000000000000000000000000000000 0 2222 0 555 5 3 2222 7 333 7 33333 0 888 4 11 0000 4 0 0 7 7 7 7 000 8888 888888888888888 0 0 8 0 0 0 8 0 0 2222222 0 6 8 0 000 22 3333 777 22 3333 11 1 7 8 7 8 7 5555 7 99999 777 22 3333 0 6 222 555 5 0 555 88 0 0 5555 2 2222 5 5 0 3 3 3 3 33333333 0 3333 3 33 0000000000 3 3 3 77 3 3 777
consensus : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTC---TCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGGC-ATAGAAAATACA-AAAAAAAAAAATTCA--CTTT--GAGG-C-TGATTT-TTAAACT---GGT--C--C--CC-GTT-GAT-TTG-TG-CT-A-AA-A-CA-AA------G-A---AGAGAGA--CGAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGATCTCN---AACAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAGAAACACA-----T-TTTAGTGTA-G-GTAAA-C-AAC-TT-----------GTGACATGCAG-ACA-GAAGACACTCTCTAGTACTTTGTTTCTT-AATT--AATTCAGT--AC---TTTGTTTTCTTAA-TTCAAGGTGA-AAAAGATGAATTGTAAATTAAAAAGT--C---A--GTGA-A--TTT-GCATAA-TGAGCTTGCCTTATGATATTG-ACAAGCTTTTGGCTGAAATTAGA--C-TTG-TTGCTGGTTTGATAA-----------CA-------------AGAA-AT---------T---C--------TACATTAT----TTTTATNTGC-AATGAATAAGTTTTTTG--NTAA-GAC--TTTTT-GCAGTTAT---GAAAGAAAT-GTAACTAG---C-TTGAT--AT-A--AACAGCTTTGCCG-ACCACAACATA-TT-GAA-CTTC-AGGCAA-G-TTT--GCCCACAATA-------TATAGT--TTTTTGTCT-TATGC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAAT--TAGAT-AATATG-TGAAAAAG--ACT--A-CACGATTC-TAANGA-CGGAGTAAACAAAACCAG-TTC-TTTAGCTATGA-CGTC---ATAATT-GA--TATGACTT--NNAATGACGTTTGANTGTACA-TGTGACGA-CATC-CATGGA--TGTA-CTTTA-GC--CATATTG--TAGGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----TAA-TGATTAATAC---GAGTATT-ACATGTTCCTTT-AA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
Reference ( gi|3 ) : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGGACAT-ATACTTGACCTA-CAACTTC---ACAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGGCCATAGAAAATACACAAAAAAAAAAATTCA--CTTT--GA-G-T-TGATTTATTAAACT---GG---C--C--CC-ATT-GAT-TTG-TG-TT-A-AA-A-CA-AA------G-A---AGAGAGA--CAAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGATCTCT---AACAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAAAAAC-CA-----T-TTTAGTGTA-G-GTAAA-C-AAC-T------------GTGACATGCAG-ACA-GA---CACTCTTAAGTACTTTGTTTCTT-A-TT--A-TTCAGTGGACG-ATTTGTTTTCTTAA-TTCATGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--C---A--GTGA-A--TTT-GCATAA-TAAGCTTGCCTTATGATATTG-ATAAGGTTTTGGGTGAAATTAGA--C-TTG-TTGCTGGTTTGATAA-----------TA-------------AGA-------------T---C--------TATATTAT----TTTTATTTGC-CTTGAATAAGTTTTTTG--CTAA-GAC--TTTTT-GCAGTTAT---AGAAGAAAT-GTAACTAG---C-TTGAT--ATAA--AACAGCTTTGCCG-ACCACAACACA-TT-GAA-CTTC-AGGCAA-G-TTT--GTCCACAATATTATTTTTATAG---TTTTTGTCT-TATGC-AT-AA-GGCATT-AGGGGCTTAC-ACTTCGATCATT-ATATGTACAATATTTT---TCAATTCAAT--TAGCT-AATATG-TGAAAAAG--ACT--A-CATGATTG-TAATGA-CGGAGTGAACAAAACCAG-TGC-TTGAGGTATGA-CGCT---ATAAAT-GA--TATGACTT--GAAATGGCGATTGACGGTACA-GGTGACGA-CAT--GATGGA--TGTA-CTTTA-GC--TATATT---TAGGGATCTTAGAGAAAGAAAACTTGAATGAAAGAAACAAGGATAAT-AAATAAA----TAAATAATTAATAG---GAGTATT-ACATATTCTTTTTAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|6 : TCTTTAC-TTTTGTT-GG--AAAAA----GAAGCACAT-ATACTTGACCTAACAACTTC---TCAAAAAGATTAATAACAAAT-GCGACTCA--AGAATATTTCCTTTTACAAG-AGGCAATGAGAAATACAAAAAAAATAAAAT-CA--CTTT--GA-G-GATGATTT--TAAACT---GGT--C--C--CC-ATTTGAT-TTG-TG-CT-A-AA-AACA-AA------G-AGAGAGAGAGA--CAAA---AGTC-A-A-CAA---G--TACCAGTTTAATGC-TGAT-TCTCAAAACAA-TTAT-TTCCCTTACT-GAAAC-TCTTTTAAGT-TAGAAACACA-----T-TTTAGTGTA-G-GCAAA-C-AAC-TT-----------GTGACATGCAGCATAAGA---CACTCTCTAGTACTTTGTTTCTT-AATT--AATTCAGT--AC---TTTGTTTT-TTAA-TTCAAGGTGA-AAAAGATGAATTGTAAATTAAAA-GT--C---A--GTGA-A--TTT-GCACAA-TGAGCTTGCTTTATGATATTG-ACAAGCTTTTGGCTGAAATTGGA--C-TTG-TTGCTGGTTTGATAA-----------CAAGAAAATTTCTGTAGA-------------T---C--------TACATTAT----TTTTATGTGC-AATGAATAAATTTTTTG--ATAA-GAC--TTTTT-GCAGTTATGAAAAAAAAAAT-GTAACTAG---C-TTGAT--AT-A--AACAACTTTGCCG-A
gi|2 : aacattttagggctgattttcagtaaaaattgcaaataattacccccttttctgcttgtattttaaaagaatgtggttgaggaattgTCTTTACCTTTTGTTATGGTAAAAAA--TGAAC-ACAT-A-ACTTGACCTAACAACTTCTCAAAAAAA---TTA-TACC-AAT-G--ACTCACAAGAA-ATATC-TTATACAAG-ATGCAAAAGAAAATACA-AAAAAAATAAA-TCAGCCTTTTCGA-G-C-TGATT--TTAAACTTTCTC---C--C--CC-ATG-TAA-TTG-TG-CTAA-AA-A-CA-AAACTAATG-A---GAAGAAA--CAAGACAAGTC-ACA-AAA---AC-TACCAGTTTA-TG-CTGATCCAA---AACAA-TTATGCCCCCTTAC-TGAAACTTCTTTTAA---TAGAAAT-CACATAGT-TCTAGT-TA-G-GCAAACC-AAC-T-------------T-ACATGCAGCATA-AA---CACTCC---ATAC--TG---CTTAA-TT--A-ATCAGT--AC---TTTG-TTTCTTAATTTCAAGGTGACAAAAAATGAATT---AATT--AAAGTCCC---AACATGATA--TTT-GCACAA-T-AGC-TGC--TAT-ATATTACATA--CTTTTGGCTGAAATTTGA--CTTTG-T--CTCCTTTGATAACAAAAAATTTCTG-------------AAA-------------T---C--------TACATTATTATATTTTATGTGCACATAAATAAATTATCTGAATAAA-GAC----TTT-GCAGTTATGACAAAAAAAATAATGACTAG---C-TTGATAAATAA--At
gi|9 : ccactgatatatcttaaggacccaaaaaaattttgctggaaacggtagtttgatactcactacatcagttacattttgttttcttcaagtaggcctaactagtattaaaatacatcctatataaaaataacttctcctagctcgttgtcagctggaaacaccagtcaaataaagcaaaatacataaagatagacccgacagaaaatagcccactgaacacatttcttaacaaccataaacaatcatacaccttcacttctttaaaaaaaagtcacattatgggaattttttttctaaatcattaacaccatatggttaacttcgcctttttgaatgtttaacagataaaaagaacaattttagcgatttcacagtaaaaagtccgcccaacaataaacccccttcttgctatttaacaagaattgtgaaaattTCTTT-C-GTTTGTT-TG--AAAAAAAATGAAGCACATTATACTTGGACCA-CAACTTC---A--AAA---TTA-TAG--AAT-G--GCTCA--AGAA-ATTTC-TTTTATAAG-AGGC-ATAGAAAATACAAAACAAAAAAAAATCA--CTTT--GAGG-C-TGATT--TTAAACT---GG---C--CCTCC-ATT-GA--TTG-TT-CT-ATAA-A-CA-AA------G-----AGAGAAA--CAAG---AG-C-A-A-CA----GG-TACCAGTTTA-Tc
gi|8 : aacactgattatctgtaagaccaaaatttactggaatgagaatgtgatatctcctacaagtaattttttcttcaaagatgcctatttagtattaaaataagttgtatataaaaaattatatgtttctagctgttcatggaaaacaccagtcaaataaagcaaaacataaaatagaggccccacaggaaaatagcccactgggaaaaattgctaaagctctagacattacacttcaactttttagaaaaaaggttcggatgttatgggagttttttttaaaaacttagatgttttgatattgtatcaaaaagaacattttagggctgattttcagctaataatggcaaattaatacccccatttctgcttgtattttaaaaaaatgaatCTTTAC-TTTTGTT-TG--AAAAAA---AAAGCACAT-ATACTTGACCTA-CATCTTC---TCAAAA---TTA-AAG--AATGG--GCTCA--ATAATATTTC-TTTAATAAG-AGGCCATAG-AAATAC------AAATAAATTCA--CTTT--GAGG-C-TGATTTTAGAAACT---GGTT-C--C--CC-ATT-GAT-TTG-TG-CT-A-----------------------------A--CAAA---AGTC-A-A-CAG---GG-TACCAGTTTA-TG-TTGATCTCA---AACAAGTTAT-GTCCCCTAC-TGAAAC-TCTTTTAAGT-TAGAAACACA-----T-tgct
gi|5 : cactgataatcagtaaggaccaaacttttctggaaatgggatggttgatattctcctacaagtaattttttcttcaagtatatctatttaggattaaaataagtgttgtatatgaaaattatatacctagctgttgtcatggaaacaccagtcaaataaagcatatcatgaaaatttaggccccacaggaaaatagcccactggaaacatttctaaatgcactagatgtacacttcactttttaaaaaaacgttcggatgtatggggaatttttttaaaacatagatgtttaagattgtatcaaaaagaacatttaagggctaattttcagtaaaaatgacaaataattacccccctttctgcttgtattgtaaaaaaaagtcttgatgaattgTAT-TTTTGTT-TG--AAAAAA--TGAAGCACAC-ATACGTGACCTA-CAACTTC---TCAAAA---TTA-TAG--AATTG--GCTCA--AGAATATTTC-TTTTATGAG-AGGCTATAGAAAATAC-CAAAAAATG---TTCA--CTTT--AA-GGC-TGATTT--TAAACT---GGTC-C--C--CC-ATT-GAT-TTG-TG-CT-A-AA-A----AT------A-A---AGAGAGA--CAAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGC-TAATATCA---AACAACTTAT-TTCCCTTACT-GGAAC-TCTTTTAAGT-TAGAAATATA-----T-TTTAGTGTA-G-GAAAA-C-AAC-TT-----------GTGACATGCAG--CA-GAAGACACTCTCTAGTACTTTCTTTCTT-T-CTTAA-TTCAGT--AC---TTTGTTT-CTTAA-TCCATGGTGA-AAAGGATGAATTGTGAAT-AAAAAGT--C---A--GTGA-A--TTT-GCATAA-TGAGCTTGCCTTATGATATTG-ACAAGCTTTTGGCTGAAATTAAA--C-TTC-TTGCTGATTTGATAA-----------CAAGAAAATTTCAGTAGA-------------T---C--------TACATTAT----TTTTATTTGC-AATGAATAAG-----TG--------------TTT-GCAGTTAT---GAAAGAAAT-GTAACTAG---C-TGGAT--AT-A--AACAGCTTTGCCG-ACCACAACATA-TT-GAA-CTTC-AGGCAA-T-TTT--GCCCACAGTG-------TATAGT--TTTTTGTCT-TATGC-AT-AA-GGCATT-AGGGG
gi|1 : ataattacaccctttttctccttatatttttaaaaaaaatgtctgaggaatgTACGTTTTGTT-TG--AAAAA---TGAAGCACAT-ATG------------ATTTC---TCAAA----TTA--AG--AAT-G--GGCTA--GAAATATTTC-TTTTATAAGTAGGT-ATGGAAAATATA-----AAAAAGAT--A--CTTT--GA-GGT-TGAATTTTGAAACG---GG---T--C--CC--CT-GATATTG-TGCTT-A-AA-A-CA-AA------G-A----GAGAGA---AAG---AGTC-A-AACAG---GGATTCCAGTTTA-TGGCTGATCTCT---AACAAGTTAT-T-CCCTTACT-GAAAC-TTTTTC---TGTAGAACC-CA-----TGTTTAG-GTATG-GTAAA-CCAAC-TT-----------GTGACATGCAG-A-A-GA---CACTCTCTAATA-TTTGTTTTTA-A-----A-TTAACT---CGTATTTGTTT-CTTAA-TTCAAGGTGA-AAAGGATGAATTGT-AATT--AAAGT--CAGAA--GTGG-AATTTT-GCATAAGTGAA-TTG-CTTATGATATTG-G-AAGCTTTTGGGCTGAATTATATTC-TTGTTTGCTGGTTTGATAA-----------CA-------------AGAACAT---------T---CAGGTAGATTACATTAT----TTTTATTTGC-AATGAATAGGTTTTTTG--CTAAGGACAGTTTTTGGCAGTT-T---GAAAGAAGT-GTAACTAG---C-TTGAT--AT-A--AACAG-TTTGCCG-ATCACTAAATA-TT-GAATCTTC-AGGCAG-T-TTT--G-CCACAATA-------TACA-----------CG-TATAG-AT-AAGGGCATTAAGGGGCTTAC-ACT----TCATT-GTATGT-TAATATTTT---TT-TTTCATT--GAG----ATA----GGATAAT--ACT--A--ATGATTC-TAATAATCGGAGT-AACAAAACCAGTTGCTTTTAGCTATGA--GTC---ATAATT-GA--TATGACTT--CAA
gi|20 : actgattaatctgtaacgaagccacatttgctggaaatgggatgtttgatatctccttaaaggtagatttttttttcaagttgcgatttagtattaagaataagagtgtaatataataaatttaatcctagctgttgtaatggaaactacagtcaaacaaagcaaaacataaaatagcccccaaggaaaatagcaaatggaaacattatgctagaagaatgcactaatagcatacactgactttttaaaaaaaaaagttcggatggtatgggaattttttttataaaagttagatgttttacagattgtagtcaaaaaagaaacattttagagtcattttcagtgaagataagcaaaataattacaccctttttctgcctgtactttaaaaaaaatgtcggaggaatttgATAGAAAATACA-----AAAAAAGTTCA--CTTT--GAGG-C-TGATTT-TT-AACT---GGTC-C--C--CC-ATT-GAT-TTG-TG-CTAA-AA-A-CA-AA------G-----AGAGAGA--t
gi|18 : gacattttttttatttctggtataactgtgttaaaTTAAACTT--GA---C--C--CCTATT-GAT-TTG-TG-CTAA-AA-A-CA-AT------G-----AGAGAGA--CAAG---AATC-A-T-C-G---GG-TACCAGTTTA-TG-CTGATCTAT---AACAAGTTAT-TTCCCTTAC-TGAAAC-TCTTTTAAGT-t
gi|8 : aattTAAACT---GGTA-C--C--CT-GTT-GAC-TTT-TG-TT-A-GC-A-CA-AA------------------------------TC-A-A-TGG---GG-AACCAGTTTaattatcagttaattttattt
gi|27 : cactgataatcagtaaggaccaaacttttctggaaatgggatggttgatattctcctacaagtaattttttcttcaagtatatctatttaggattaaaataagtgttgtatatgaaaattatatacctagctgttgtcatggaaacaccagtcaaataaagcatatcatgaaaatttaggccccacaggaaaatagcccactggaaacatttctaaatgcactagatgtacacttcactttttaaaaaaacgttcggatgtatggggaatttttttaaaacatagatgtttaagattgtatcaaaaagaacatttaagggctaattttcagtaaaaatgacaaataattacccccctttctgcttgtattgtaaaaaaaagtcttgatgaattgctttacttttgtttgaaaaaaaaagcacatatacttgacctacatcttctcaaaattaaagaatgggctcaataatatttctttaataagaggccatagaaatacaaataaattcactttgaggctgattttagTAAACT---GGTA-C--C--CC-GTT-GAT-TTGGTA-CT-A-CACA-CA-AACTC---G-A---GAAAAG---CGAG---AGCC-A-A-CAG---GG-TATCAGTTTA-tgttgatctcaaacaagttatgtcccctactgaaactcttttaagttagaaacacat
gi|30 : cAACT---GGTACC--C--CC-ATT-GAT-TGG-TG-CT-A-CACG-CA-AACTT---G-A----GAGAAG--CGAG---AGCC-A-A-CAG---GA-TACCAGTTTA-a
gi|34 : tAACT---GATA-C--C--CC-GTT-GAT-TTG-TG-CT------A-CACGA------G-A---AGCGAG-----------GTC-A-A-CAGA--GG-TACCAGTTTA-
gi|31 : AACT---GG---CACC--CT-GTT-GAT-TGT-TG-CT-A-CACA-CA-AA------C-G---AGATAGAAGTGAG---AGCC-A-A-CAG---GG-TACCAGTTT
gi|29 : AACT---GGATAC--C--TC-GTTTGAT-TGG-TGCTT-ACAA-G-TG-GG------GTG---AGAGAAA--CGAG---AGTCGA-A-CAG---GT-TACCAGTTT
gi|28 : AACT---GGATAC--C--TC-GTTTGAT-TGG-TGCTT-ACAA-G-TG-GG------GTG---AGAGAAA--CGAG---AGTCGA-A-CAG---GT-TACCAGTTT
gi|41 : AACT---GGTA-C--C--CC-ATT-GAT-TGG-TG-CT-ACAC-A-CA-AA------
gi|36 : tACT---GGTA-C--C--CC-ACT-GAT-TGG-TG-CT----------------------------------CGAG---AGGC-A-A-CAG---GG-TACCAGTc
gi|38 : ---AGAGAAG--TGAG---AGCC-A-A-CAGCCTGG-TACCAGTTTA-T
gi|42 : actcgGAGA--CACG---AGTC-A-A-CAG---GG-TACCAGTTTA-TACag
gi|31 : --CAAC---AATC-A-A-CAG---GG-TGCCAGTT
gi|27 : ---AATC-A-A-CGG---GG-TACCAGTTTA-ctacacacaaacgagatagaagtgagagccaacagggtaccagttt
gi|4 : cT---AACAA--TAT-T-CCCTTACT-GAAAC--CTTTTAA-T-TAGAAACACA-----T-TC--ATGTA-GAGTAAA-C-AAC-TTGTGACCCAAGTGTGACATGCAG--CA-GAAGACACTCTCTAGTACTTTGTTTCTT-AATT--AATTCAGT--AC---TTTGTTT-CTTAA-TTCATGGTGA-AAAAGATGAATTGTAA-TTAAAA--T--C---A--GTGA-A--TTTTGCATAA-TGAGCT-GCCTT----TATTA-ACAACTTTTTGGCTGAAATTAGA--C-TTG-TTGCTGGTTTGATAA-----------CA-------------AGAAAATTTCAG----TGAAC--------TACATTAT----TTTAATT-GC-AATGAATAAGTTTTT-G--CAAA-GAC--TTTT--GCAGTTA--------------GTAACTAG---C-TTGAT--ATAATTAACAGCTT-GCCG-ACCACAACATAATT-GAA-CTTC-AGGCAA-GGTTT--GCCCACAATAT-ATT-----AG---TATTTGTCT-TATGC-AT-AG-GGCATT-AGGGGCTTACGACTTC----ATTGATATGTACAA-ATATT---TCAATTCAAT--TAGAT-AA-ATG-TGAAAAAG--ACT--A-CATGATTC-TAATGA-CGGAGT-AACAAAACCAG-TTC-TT-ATCTATGA-CGTC---ATAATT-GA--TATAAATTTCAAAATGACGTTTGATG-TACA-TGTGAC----AT--CATGGA--TGTCTCTTTG-GC--C-TATTA--TAGG-ATCTTAGAGAAAGAAAACTGGAGTGAAAGAAACAAGGATAAT-AAATAAA----TCAATGATTAATAC---GAGTAAT-ACA-GTTC-TTTAAA---CTTTAGACA-TTCAT-ACT-TT-TTCTG-CGA-TCTGA-G-GGCAGTAAtggtactacacacaaactcgagaaaagcgagagccaacagggtatcagtttaa
gi|37 : AGAAACACA-----G-TTTAATGTA-A-GTAAA-C-AACTT------------GTGACATGCAG--CA-Gctgaggcctagcggctag
gi|11 : TGTAAATTAAAA-GT--C---A--GTGA-A--TTT-GCATTA-TTAGCTTG
gi|11 : ATTAG---C-TTG-TTGCTGGTTTCATAA-----------CA-------------AGAAAATATCTCTACAT---C--------TACATTAT----TTTTATGTGC-AATGAGTACGATTTT-G--ATAA-GAC--TTTCT-GCAGTTAT---GAAAGAAAT-ATAACTAG---C-TTGAT--ATAA--A-CAGCTTTGCCG-AACACAACATA-TT-GAA-CTTC-AGGCAA-G-TTT--GCCCACAATAC-------ATAA---TTTTTGTCC-TATGC-AT-AG-GATATT-AGGGGCTTAC-ACTTC----ATT-ATATGTGCAATATTTT---TCAATTAATT--TACAT-AATATG-TGAAAAAG--ACC--A-CACGATTC-TAAAGA-CGGAGTAAAGAAAACCAG-TTC-TCTAGCTATGA-CGTC---ATAATT-GA--TATGACTT--TCAATGACGTTTGAttgctggtttcataacaagaaaatatctctacatctacattatttttatgtgcaatgagtacgattttgataagactttctgcagttatgaaagaaatataactagcttgatataaacagctttgccgaacacaacatattgaacttcaggcaagtttgcccacaatacataatttttgtcctatgcataggatattaggggcttacacttcattatatgtgcaatatttttcaattaatttacataatatgtgaaaaagaccacacgattctaaagacggagtaaagaaaaccagttctctagctatgacgtcataattgatatgactttcaatgacgtttga
gi|32 : tgtaaattaaaagtcagtgaatttgcattCAGTTAT---GAGAGAAAT-GTAACTAG---C-TTGAT--TTTT--ATTAGCTTTGCCG-ACCACAACATA-TT-GAA-CTTC-
gi|15 : AAT-GTAACTAG---C-TTGAT--AT-A--AACAACTTTGCCG-A
gi|14 : TAACTAGAGTCGTTGAT--A-----AACCACTTTGCCGGACCACAACATA-TTGGAA-CTTCAAGGCAAGG-TTTGAGCCCAAGATA----CGTTATAGTTTTTTTTGTCTATA-GCGATAAA-GGC----AGTGGCTTAC-ACT----TCATT-TTATGTCGAATATGTTATGTCAATCTAATGATAG----ATATGTTGATACAGTTGTC--ATCATG-TTGCTAATGA-CTGAGTttctaaagacggggtaaacaaaaccagttctttagctatgacgtcataattgatatgactttcaatgacgtttgaatgtacatgtgacgacatcatggatgtactttagctatattcagagatcttagagaaagaaaactggaatgaaaga
gi|17 : TAC-ATTTC-ATC-TT-ATATGTACAATATTTTT--TCAATTCAAT--TAGAT-AATATG-CGAAAAAG--ACT--A-CACGATTC-TAATGA-CGGAGTAAACAAAACCAG-TGT-TTTAGCTATGA-CGTC---ATAA
gi|15 : AATGTAAC--TAGCTTGATAT-----AAACA--ACTTTG-C-CGATTC-TAAAGA-CGGGGTAAACAAAACCAG-TTC-TTTAGCTATGA-CGTC---ATAATT-GA--TATGACTT--TCAATGACGTTTGAATGTACA-TGTGACGA-CAT--CATGGA--TGTA-CTTTA-GC--TATATT---CAGAGATCTTAGAGAAAGAAAACTGGAATGAAAGAtagggcgagaaagtttcgaagttac
gi|16 : GATTC-TAAAGA-CGGA---AACAAA-CCA--T-C-TTTACCTATTA-CACCGTCATAACTTGA--TATGACTT--TCAATAACG-TCAAT--TACACTGTGACGA-CATC-CATGCAACTAAA-CTTTA-GCCTCATAAT---GCAGAATCTTAGA-AAAGAAA
gi|7 : gataaataaacaaacccgtcccTATGATCGGT----CAAATTGAATTATGACTTTCAAAATGACGTTTGAATGTACA-T-TGACGAACATCAAATGGA--TGTA-CTTTAAGC--TATACTGTATAGGGACCTTAAGAAAAGAAAACTGGAA-GAAAGAAACAAGGA-AATAAAATCAA----TA---AATTAATAC---GAGTATTAACATATTCCTTATAAAACCTTTAGACATTTCATAACTGTTA-TCTG-CGATTCTGAGG-GGCAGTA
gi|10 : GAAACAAGGATA-T-AAATAAAATCACAATTGATTAATACCTTGAGTATT-ACATGTTCTTAT-AA---CTTTATACATTTCAT-ACT-TTATTCTGTCGATTTTGA-GAGGCAGGAActgaggccttatgcggctagtccatttgaactagcctcccctccgggtcccaccccaatatacccagaaaatggtctattcataaagttattggcaaagaatcagtcaaaatttgatatgcacgtatcgaactgaacgtcaaaatgtgaagaaattgcaaaaacaaaaatccaacaaccaaccaactcgcttaaatacctatactagtatgacggatggcctgtacacacacccccctcttttaagtaagtgttaataagatacattttttgcatagatacatttatattcgattgtgtgcttatatcatgttgctaatggactgcgctataacaagtgtttttttatgcgatttaaagtgagaacaacacagataaatcagtggaaataattttgacatccttgtagtcttttagtctcctagttatgtgatttcgacacacctaattagcat
13 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ACACTGATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTTGATATTCTCCTACAAATATTTTTGTCTTCAAGTATGCCTATAGACTCTATTCACGCGTCGGCCATAAAAATACGAAAACGAGGCTGCCTATTTAGTATTAAAATAAGTTGTATATACAAATTATATTCCTAGCTGTTGTCATGGAAACACCAGTCAAATAAAGCAAAACATGAAAATATAGGCCCCACAGGAAAATAGCCCACTGGAAACATTTCTAAATGCACTAGACATACACTTCACTATTTAAAAAAAAGTTTGGATGTATCGGGATTTTTTTTAAAAACTTAGATGTTTATTAAAGATTGTATAAAAAAGAACATTT
Unaligned ( gi|13 ): TTGTTGGAAATTGGGATGTTTGATATTCTCTTCAAAGAATTTTTCTTCAAGTATGCTATTTAGTATTAAAAATAAGTTGTCATATAAAAATTATATTCCTCAGCTGTTTGTCATGGAAACACCAGTCAAAGTAAAGCAAAACATGAAAAATATAGGCCCCACAGGAAAATGTCTGCACAGGAGACAATTTCTAATCAAGACATAACACTTCATTTTTAAAAATAAAAGTTGGATGTATGGGGATTTTTTTTAAAACTTAGATGTTTTAAGATGTATCAAAAAGAACAGTTTTTAAGGGCTGATTTCAGTAAAAATGCAAATACCGTACACCCCTTTTTCTTGCTTGTATTAAAAAAAGATTCTGAG
Unaligned ( gi|19 ): ACACTTCACTTTTTAAAAAAAAGTTCGGATATATGGGGATTGTTTTTTAAACCTAGATGTTTAAGATTGTATAAAAAAAGAACATTTTAGGGATGATTTTCAGTAAAAATGGCAAATAA
Unaligned ( gi|21 ): ACACTGATTATCTTTAAGGACCAAAATTTGCTGGAAACGGGATGTTTGATATTCTCCTACAAGTAATTTTTTTTCTTCAAGTATGCCTATTTAGTATTAAAATAAGTCGTATATAAA
Unaligned ( gi|22 ): TATTAGAATAAGTTGTATATAAAAATTATATTCATAGATGTCATGGAAACACCAATCAAATAAAGCAAACTTTGAAAATGTAGGCCCCACAGGAAAAGAGCCTACTG
Unaligned ( gi|23 ): AACACTGCTATATCTGTAAGCCAAATTGCTGGAAATTGGGAGTTTGATATTCTCCTTCAAGTAATTTTTTCTTCAAGTTAGCCTATTTAGTATTAAAATAAGTTGT
Unaligned ( gi|24 ): AACACTGATTATAAGGACCAAAATTTGCTGGAATTGGAATGTTTGATATTCTTCTACAAGTATTTTTTTCGCAAGTATGCCCATTTAGTAATTTAAAATAAGT
Unaligned ( gi|25 ): ATTTCTAAAAGCACTAGACATACACTTCACTTTTAAAAACATTCGGATGTATGGAGATTTTTTAAAAAAAAACTTAGATGTTTAAGATTGTATC
Unaligned ( gi|26 ): TGGCTCGAGAAATAGTGTTTTCACTACACTTGAAAATACAGATAGGATAAAACCGGTGATTCCGGAATATGGGCAATACTAACCTATA
Unaligned ( gi|33 ): GGCCTTAATAAAATTTAGTGAAATCGTTTATATAAATACTTGCAAATTCTTTTATCAGTCTT
Unaligned ( gi|35 ): CTCCGTGAAGCGTAAAGTGGTACCCCGTTGTTGGCTGCTACACCAA
Unaligned ( gi|39 ): TATATGTTGATGTGCTGTATGATATTTTATGTTTGCAAATAT
Unaligned ( gi|40 ): TGCGATTTAGAGAGCAGTAACTGAGGCCTAGCGGCTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 1 1111 1 222 11 1 1 111111 11 2222 4444444444444444444444444 11 1 22 111 1 22222222222 2222 1 111111 11 1111111111111111111111111111111111111111 1111 1111 111 111 1111 1 3333333 2222 3333 111 1 111 2 11 1111 222222 1 333333 111 111 1 11 1 111 1 1 1 1 1
lowQualScore : 1 5 77 4444 5 1 1 000 77 33 1 77 77 5 5 5 5 0 5 5 55 5 888888 66 66 5 4 44 2 8888 2 66 7 2 2 2 3333333333333333333333333 33 444 4 2 2 666 2 3 99 5 1 5 1 666 44 5 5 5 5 3 333 5 5 1 77777777777 8888 1 3 99 99 7 7 6 4 6 3 5 77 000000 5 33 5 3 5 9 2 1 1 6 77 5 5 8888888888888888888888888888888888888888 2222 6 5 8 6666 5 666 5 777 4 777 4 4444 99999 4 5 5 5 5 3 99 1 3333333 6 1111 3 5 6 6 6 6 6 6 3333 6 5 888 3 6 3 6 99 6 1 5 0 77 555 5 77 9999 99 8 8 8 0 8 11 8 8 1111 222222 3 3 3 3 0 666666 333 777 0 3 22 0 777 3 0 0 66 0 3 0 0
lowQualScore : . . .. .... . . . ... .. .. . .. .. . . . . . . . .. . ...... .. .. . . .. . .... . .. . . . . ......................... .. ... . . . ... . . .. . . . . ... .. . . . . . ... . . . ........... .... . . .. .. . . . . . . . .. ...... . .. . . . . . . . . .. . . ........................................ .... . . . .... . ... . ... . ... . .... ..... . . . . . . .. . ....... . .... . . . . . . . . .... . . ... . . . . .. . . . . .. ... . .. .... .. . . . . . .. . . .... ...... . . . . . ...... ... ... . . .. . ... . . . .. . . . .
lowQualScore : 4 7 99 3333 7 4 7 000 44 66 4 99 99 0 7 7 7 0 0 0 11 0 666666 99 99 0 4 55 4 0000 4 22 1 4 4 4 0000000000000000000000000 11 111 7 4 4 555 4 1 33 7 0 0 9 000 99 0 6 0 0 2 888 7 7 4 11111111111 9999 0 5 22 22 3 3 7 0 7 6 4 99 111111 7 66 7 0 0 3 5 0 0 7 99 7 7 1111111111111111111111111111111111111111 1111 6 7 7 1111 7 333 7 555 4 000 0 0000 33333 4 7 7 7 7 3 22 0 3333333 7 5555 2 7 7 7 7 7 7 7 8888 7 7 333 2 7 2 7 22 7 0 0 6 99 666 0 99 9999 22 8 0 0 0 0 00 0 0 4444 222222 2 2 2 2 0 000000 555 555 0 2 00 0 555 2 0 0 55 0 2 0 0
consensus : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA-AAAANAAATTCA--CTTT--GAGGCTGA-TTT-T-TAAACT-GG-TA-CC-CC-GTT-G-AT-TTG-TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAGA---GTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCNAA-CAAGTTAT-TTCCCTTACTTGAAACT-CTTTTAAGT-TAGAAA-CACAT---TTTAGTGTA-G-GTAAAC-AACTTGTGAC-----------ATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCANGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAA-A-------TTTC-G-A--T--------C--------TACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTT--TCAA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
Reference ( family-664 ) : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA-AAAAAAAATTCA--CTTT--GAGGCTGA-TTT-T-TAAACT-GG-T--CC-CC-GTT-G-AT-TTG-TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAGA---GTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCNAA-CAAGTTAT-TTCCCTTACTTGAAACT-CTTTTAAGT-TAGAAA-CACAT---TTTAGTGTA-G-GTAAAC-AACTTGTGAC-----------ATGCAGACAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCAAGGTGA-AAAAGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAG-AA-A-------T---------T--------C--------TACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAANGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTT--NNAA--TGACGTTTGANTGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--CATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-CTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|1 : TACGTTTTGTT-TG--AAAAA---TGAAGCACAT-ATG------------ATTTCTCAAA----TTA--AG--AAT-G--GGCTA--GAAATATTTC-TTTTATAAGTAGG-T-A-TG-GAAAATATA-AAA-AAGA------TA--CTTT--GAGGTTGAATTT-T-GAAACG-GG-T--CC-CC---T-G-ATATTG-TGCTTA-AA-A-CAAA------G-A----GAGAGA---AAGA---GTC-A-AACAG---GGATTCCAGTTTA-TGGCTGAT-CTCTAA-CAAGTTAT-T-CCCTTACT-GAAACT-TTTTC---TGTAGAAC-C-CATG--TTTAG-GTATG-GTAAACCAACTTGTGAC-----------ATGCAGA----AGACACTCTCTAATA-TTTGTTTTTAAATTAACTC-GT--A---TTTGTTT-CTTAA-TTCAAGGTGA-AAAGGATGAATTGTAA-TTAAA--GT--CA--GAAGTGG-AATTTTGCATAAGTGAA-TTGC-TTATGATATTGG-AAGCTTTTGGGCTGAA-TTATATTCTTGTTTG-CTGGTTTGATAACAAG-AACA-------T---------T--------CAGGTAGATTACATTAT----TTTTATTTGCA-ATGAATAGGTTTTTTG-CT-AAGGACAGTTTTTGGCAGTT-TG---AAAGAAGT-GTAACTAG---C-TTGAT----AT-A---AACAG-TTTGCCG-ATCACTAAAT-ATT-GAATCTTC-AGGCAG-TTTT--G-CCACAATA-------TA-CA-----------CGTAT-AG-AT-AAGGGCATTAAGGGGCTTAC-ACT----TCATT-GTATGT-TAATATTTT---TT-TTTCATTGAGATA-GGAT-------AAT--ACTA--ATGATTCTAATAATCGGAGT-AACAAAACCAGTTGCTTTTAGCTATGA----GTCATAA-TTGA--TATGACTT--CAA
gi|10 : actgattaatctgtaacgaagccacatttgctggaaatgggatgtttgatatctccttaaaggtagatttttttttcaagttgcgatttagtattaagaataagagtgtaatataataaatttaatcctagctgttgtaatggaaactacagtcaaacaaagcaaaacataaaatagcccccaaggaaaatagcaaatggaaacattatgctagaagaatgcactaatagcatacactgactttttaaaaaaaaaagttcggatggtatgggaattttttttataaaagttagatgttttacagattgtagtcaaaaaagaaacattttagagtcattttcagtgaagataagcaaaataattacaccctttttctgcctgtactttaaaaaaaatgtcggaggaatttgGAAACAAGGATA-T-AAATAAAATCAC-AATTGATTAATACCTTGAGTATT-ACATGTTC-TTA-TAA---CTTTATACATTTCAT-ACT-TTATTCTGTCGATTTTGA-GAGGCAGGAAt
gi|11 : TGTAAATTAAAA-GT--CA--G---TGA-A--TTTGCATTA-TTAGCTTGctgagccttagggcggtattccagtttttgaactacgccatacccatgggtcccagcccataatacccatgggatggtctatgtcaataaaattatttggcaaaaaatctatatgaaaaaattttgatatgcacgtatcgaactgaaacgtcaaattgaaaatgctattataaacaaaatcacaacaaaccaactcgctaaatacctggctatactagtatacggatggctgtaacaacccccccctcctcttttaagtaagtggttaaaataagcatataatttttcatagtacagtatatgtgattttagctattactcattcctaatgatggcgcatcgaataaaagtgtggatacacacagaataaatcattgaaaatatttttacatcttgtgtttagtcccttagaaatgtgatttgacacctaattaac
gi|11 : ATTAG---CTTGTT-G-CTGGTTTCATAACAAG-AA-AATATCTCTACA------T--------C--------TACATTAT----TTTTATGTGCA-ATGAGTACGATTTT-G-AT-AA-GAC--TTTCT-GCAGTTATG---AAAGAAAT-ATAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-AACACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------CA-TAA--TTTTT-GTCCTAT-GC-AT-AG-GATATT-AGGGGCTTAC-ACTTC----ATT-ATATGTGCAATATTTT---TCAATTAATTTACATA-ATATG-TGAAAAAG--ACCA-CACGATTCTAAAGA-CGGAGTAAAGAAAACCAGTT--CTCTAGCTATGAC---GTCATAA-TTGA--TATGACTT--TCAA--TGACGTTTGAttgctggtttcataacaagaaaatatctctacatctacattatttttatgtgcaatgagtacgattttgataagactttctgcagttatgaaagaaatataactagcttgatataaacagctttgccgaacacaacatattgaacttcaggcaagtttgcccacaatacataatttttgtcctatgcataggatattaggggcttacacttcattatatgtgcaatatttttcaattaatttacataatatgtgaaaaagaccacacgattctaaagacggagtaaagaaaaccagttctctagctatgacgtcataattgatatgactttcaatgacgtttga
gi|14 : tgtaaattaaaagtcagtgaatttgcattTAACTAGAGTCGTTGAT----A------AACCACTTTGCCGGACCACAACAT-ATTGGAA-CTTCAAGGCAAGGTTTGAGCCCAAGATACGT----TA-TAGTTTTTTTTGTC-TATAGCGATAAA-GGC----AGTGGCTTAC-ACT----TCATT-TTATGTCGAATATGTTATGTCAATCTAAT--GATAGATATGTTGATACAGTTGTCATCATGTTGCTAATGA-CTGAGT
gi|15 : AAT-GTAACTAG---C-TTGAT----AT-A---AACAACTTTGCCG-A
gi|15 : CGATTCTAAAGA-CGGGGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTT--TCAA--TGACGTTTGAATGTACA-TGTGACGA-CAT-CA-TGGA--TGTA-CTTTA-GC--TATATT-CA--GAGATCTTAGAGAAAGAAAACTGGAATGAAAGAttctaaagacggggtaaacaaaaccagttctttagctatgacgtcataattgatatgactttcaatgacgtttgaatgtacatgtgacgacatcatggatgtactttagctatattcagagatcttagagaaagaaaactggaatgaaaga
gi|16 : aatgtaactagcttgatataaacaactttgcCGATTCTAAAGA-CGGA---AACAAA-CCA--T--CTTTACCTATTACACCGTCATAACTTGA--TATGACTT--TCAA--TAACGTC--AAT-TACACTGTGACGA-CATCCA-TGCAACTAAA-CTTTA-GCCTCATAATGCA---GAATCTTAGA-AAAGAAA
gi|17 : gataaataaacaaacccgtccTAC-ATTTCA-TC-TT-ATATGTACAATATTTTT--TCAATTCAATTAGATA-ATATG-CGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTG--TTTTAGCTATGAC---GTCATAA-T
gi|18 : TT-T-TAAACTTGA-C--CC-CT-ATT-G-AT-TTG-TGCTAA-AA-A-CAAT------G-----AGAGAGA--CAAGA---ATC-A-T-C-G---GG-TACCAGTTTA-TG-CTGAT-CTATAA-CAAGTTAT-TTCCCTTAC-TGAAACT-CTTTTAAGT-agggcgagaaagtttcgaagttac
gi|2 : aaTCTTTACCTTTTGTTATGGTAAAAAA--TGAA-CACAT-A-ACTTGACCTAACAACTTCTCAAAAAAATTA-TACC-AAT-G--ACTCACAAGAA-ATATC-TTATACAAG-ATG-C-A-AAAGAAAATACA-AAA-AAAATAAAT-CAGCCTTTTCGAG-CTGA-TTT-T--AAACT-TTCT--CC-CC-CAT-GTAA-TTG-TGCT-A-AA-AACAAAACTAATG-A---GAAGAAA--CAAGACAAGTC-ACA-AAA---AC-TACCAGTTTA-TGC-TGAT-CCAAAA-CAA-TTATGCCCCCTTACT-GAAACTTCTTTTAA---TAGAAATCACATAGTTCTAGT-TA-G-GCAAACCAACTT---AC-----------ATGCAG-CATAA-ACACTCC---ATACT--G---CTTAATTAAT-CAGT--AC--TTTG-TTTCTTAATTTCAAGGTGACAAAAAATGAATT---AATT--AAAGTCCCAACA---TGATA--TTTGCACAA-T-AGC-TGC--TAT-ATATT-ACATACTTTTGG-CTGAAATTTGA--CT--TT-GTCTCCTTTGATAACAAA-AA-A-------TTTCTGAAA-T--------C--------TACATTATTATATTTTATGTGCACATAAATAAATTATCTGAATAAA-GAC----TTT-GCAGTTATGACAAAAAAAATAATGACTAG---C-TTGATAA--AT-A---AACaattatcagttaattttattt
gi|20 : ccactgatatatcttaaggacccaaaaaaattttgctggaaacggtagtttgatactcactacatcagttacattttgttttcttcaagtaggcctaactagtattaaaatacatcctatataaaaataacttctcctagctcgttgtcagctggaaacaccagtcaaataaagcaaaatacataaagatagacccgacagaaaatagcccactgaacacatttcttaacaaccataaacaatcatacaccttcacttctttaaaaaaaagtcacattatgggaattttttttctaaatcattaacaccatatggttaacttcgcctttttgaatgtttaacagataaaaagaacaattttagcgatttcacagtaaaaagtccgcccaacaataaacccccttcttgctatttaacaagaattgtgaaaatt-A-TA-GAAAATACA-AAA-AAAG----TTCA--CTTT--GAGGCTGA-TTT-T-T-AACT-GG-TC-CC-CC-ATT-G-AT-TTG-TGCTAA-AA-A-CAAA------G-----AGAGAGA--
gi|27 : gacattttttttatttctggtataactgtgttaaa-TAAACT-GG-TA-CC-CC-GTT-G-AT-TTGGTACT-A-CACA-CAAACTC---G-A---GAAAAG---CGAGA---GCC-A-A-CAG---GG-TATCAGTTTA-t
gi|28 : cAACT-GGATA-CC-TC-GTTTG-AT-TGG-TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAGA---GTCGA-A-CAG---GT-TACCAGTTTa
gi|29 : AACT-GGATA-CC-TC-GTTTG-AT-TGG-TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAGA---GTCGA-A-CAG---GT-TACCAGTTT
gi|3 : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGGACAT-ATACTTGACCTA-CAACTTCACAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-CCA-TA-GAAAATACACAAA-AAAAAAAATTCA--CTTT--GA-GTTGA-TTTAT-TAAACT-GG----CC-CC-ATT-G-AT-TTG-TGTT-A-AA-A-CAAA------G-A---AGAGAGA--CAAGA---GTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCTAA-CAAGTTAT-TTCCCTTACTTGAAACT-CTTTTAAGT-TAAAAA-C-CAT---TTTAGTGTA-G-GTAAAC-AAC-TGTGAC-----------ATGCAGAC---AGACACTCTTAAGTACTTTGTTTCTT-ATT-ATTCAGTGGACGATTTGTTTTCTTAA-TTCATGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TAAGCTTGCCTTATGATATTGATAAGGTTTTGG-GTGAAATTAGA--CTTGTT-G-CTGGTTTGATAATAAG-A--------------------T--------C--------TATATTAT----TTTTATTTGCC-TTGAATAAGTTTTTTG-CT-AA-GAC--TTTTT-GCAGTTATA---GAAGAAAT-GTAACTAG---C-TTGAT----ATAA---AACAGCTTTGCCG-ACCACAACAC-ATT-GAA-CTTC-AGGCAA-GTTT--GTCCACAATATTATTTTTA-TAG---TTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTCGATCATT-ATATGTACAATATTTT---TCAATTCAATTAGCTA-ATATG-TGAAAAAG--ACTA-CATGATTGTAATGA-CGGAGTGAACAAAACCAGTG--CTTGAGGTATGAC---GCTATAA-ATGA--TATGACTT--GAAA--TGGCGATTGACGGTACA-GGTGACGA-CAT-GA-TGGA--TGTA-CTTTA-GC--TATATT-TA--GGGATCTTAGAGAAAGAAAACTTGAATGAAAGAAACAAGGATAAT-AAATAAA----TAAAT-AATTAATAG---GAGTATT-ACATATTCTTTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|30 : AACT-GG-TACCC-CC-ATT-G-AT-TGG-TGCT-A-CACG-CAAACTT---G-A----GAGAAG--CGAGA---GCC-A-A-CAG---GA-TACCAGTTTA-
gi|31 : tAACT-GG-CA-CC-CT-GTT-G-AT-TGT-TGCT-A-CACA-CAAA------C-G---AGATAGAAGTGAGA---GCC-A-A-CAG---GG-TACCAGTTT
gi|32 : CAGTTATG---AGAGAAAT-GTAACTAG---C-TTGATTTTTAT-------TAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-
gi|34 : AACT-GA-TA-CC-CC-GTT-G-AT-TTG-TGCT------A-C-----------A---CGAGAAG--CGAG----GTC-A-A-CAGA--GG-TACCAGTTTA-
gi|36 : ACT-GG-TA-CC-CC-ACT-G-AT-TGG-TGCT---------------------------------CGAGA---GGC-A-A-CAG---GG-TACCAGT
gi|37 : AGAAA-CACAG---TTTAATGTA-A-GTAAAC-AACTTGTGAC-----------ATGCAG-CAG
gi|38 : ---AGAGAAG--TGAGA---GCC-A-A-CAGCCTGG-TACCAGTTTA-T
gi|4 : actcgAA-CAA--TAT-T-CCCTTACT-GAAAC--CTTTTAA-T-TAGAAA-CACAT---TC--ATGTA-GAGTAAAC-AACTTGTGACCCAAGTGTGACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTG-TTTCTTAA-TTCATGGTGA-AAAAGATGAATTGT-AATTAAAA--T--CA--G---TGA-AT-TTTGCATAA-TGAGC-TGCCTT----TATTAACAACTTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAA-A-------T---------TTCAGTGAAC--------TACATTAT----TTTAAT-TGCA-ATGAATAAG-TTTTTG-CA-AA-GAC---TTTT-GCAGTTA--------------GTAACTAG---C-TTGAT----AT-AATTAACAGC-TTGCCG-ACCACAACATAATT-GAA-CTTC-AGGCAAGGTTT--GCCCACAATA-------TATTAG---TATTTGTCTTAT-GC-AT-AG-GGCATT-AGGGGCTTACGACT----TCATTGATATGTACAA-ATATT---TCAATTCAATTAGATA-A-ATG-TGAAAAAG--ACTA-CATGATTCTAATGA-CGGAGT-AACAAAACCAGTT--C-TTATCTATGAC---GTCATAA-TTGA--TATAAATTTCAAAA--TGACGTTTGA-TGTACA-TGT---GA-CAT-CA-TGGA--TGTCTCTTTG-GC--C-TATTATA---GGATCTTAGAGAAAGAAAACTGGAGTGAAAGAAACAAGGATAAT-AAATAAA----TCAAT-GATTAATAC---GAGTAAT-ACA-GTTC-TTT-AAA---CTTTAGACA-TTCAT-ACT-TT-TTCTG-CGA-TCTGA-G-GGCAGTAAag
gi|41 : tAACT-GG-TA-CC-CC-ATT-G-AT-TGG-TGCT-ACAC-A-CAAA------ctgaggcctagcggctag
gi|42 : tGAGA--CACGA---GTC-A-A-CAG---GG-TACCAGTTTA-TACc
gi|5 : TAT-TTTTGTT-TG--AAAAAA--TGAAGCACAC-ATACGTGACCTA-CAACTTCTCAAAA---TTA-TAG--AATTG--GCTCA--AGAATATTTC-TTTTATGAG-AGG-CTA-TA-GAAAATACC-AAA-AAATG---TTCA--CTTT--AAGGCTGA-TTT-T--AAACT-GG-T--CC-CCCATT-G-AT-TTG-TGCT-A-AA-A---AT------A-A---AGAGAGA--CAAGA---GTC-A-A-CAG---GG-TACCAGTTTA-TGC-TAAT-ATCAAA-CAACTTAT-TTCCCTTACT-GGAACT-CTTTTAAGT-TAGAAA-TATAT---TTTAGTGTA-G-GAAAAC-AACTTGTGAC-----------ATGCAG-CAGAAGACACTCTCTAGTACTTTCTTTCTTTCTTAATTCAGT--AC--TTTGTTT-CTTAA-TCCATGGTGA-AAAGGATGAATTGTGAAT-AAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAAA--CTTCTT-G-CTGATTTGATAACAAGAAA-A-------TTTCAGTAGAT--------C--------TACATTAT----TTTTATTTGCA-ATGAATAAG-----TG--------------TTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TGGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-TTTT--GCCCACAGTG-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGG
gi|6 : ataattacaccctttttctccttatatttttaaaaaaaatgtctgaggaatgTCTTTAC-TTTTGTT-GG--AAAAA----GAAGCACAT-ATACTTGACCTAACAACTTCTCAAAAAGATTAATAACAAAT-GCGACTCA--AGAATATTTCCTTTTACAAG-AGG-C-AATG-AGAAATACA-AAA-AAAATAAAATCA--CTTT--GAGGATGA-TTT-T--AAACT-GG-T--CC-CC-ATTTG-AT-TTG-TGCT-A-AA-AACAAA------G-AGAGAGAGAGA--CAAAA---GTC-A-A-CAA---G--TACCAGTTTAATGC-TGATTCTCAAAACAA-TTAT-TTCCCTTACT-GAAACT-CTTTTAAGT-TAGAAA-CACAT---TTTAGTGTA-G-GCAAAC-AACTTGTGAC-----------ATGCAG-CATAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTT-TTAA-TTCAAGGTGA-AAAAGATGAATTGTAAATTAAAA-GT--CA--G---TGA-A--TTTGCACAA-TGAGCTTGCTTTATGATATTGACAAGCTTTTGG-CTGAAATTGGA--CTTGTT-G-CTGGTTTGATAACAAGAAA-A-------TTTCTGTAGAT--------C--------TACATTAT----TTTTATGTGCA-ATGAATAAATTTTTTG-AT-AA-GAC--TTTTT-GCAGTTATGAAAAAAAAAAT-GTAACTAG---C-TTGAT----AT-A---AACAACTTTGCCG-A
gi|7 : aacattttagggctgattttcagtaaaaattgcaaataattacccccttttctgcttgtattttaaaagaatgtggttgaggaattgTATGATCG-GTCA-AA-TTGAATTATGACTT--TCAAAATGACGTTTGAATGTACA-T-TGACGAACATCAAATGGA--TGTA-CTTTAAGC--TATACTGTATAGGGACCTTAAGAAAAGAAAACTGGAA-GAAAGAAACAAGGA-AATAAAATCAA----T-AA---ATTAATAC---GAGTATTAACATATTC-CTTATAAAACCTTTAGACATTTCATAACTGTTA-TCTG-CGATTCTGAGG-GGCAGTAt
gi|8 : CTTTAC-TTTTGTT-TG--AAAAAA---AAAGCACAT-ATACTTGACCTA-CATCTTCTCAAAA---TTA-AAG--AATGG--GCTCA--ATAATATTTC-TTTAATAAG-AGGCC-A-TA-G-AAATAC-------AAATAAATTCA--CTTT--GAGGCTGA-TTT-TAGAAACT-GGTT--CC-CC-ATT-G-AT-TTG-TGCT----A-A-CAAA-------------------------A---GTC-A-A-CAG---GG-TACCAGTTTA-TG-TTGAT-CTCAAA-CAAGTTAT-GTCCCCTAC-TGAAACT-CTTTTAAGT-TAGAAA-CACAT---ctgaggccttatgcggctagtccatttgaactagcctcccctccgggtcccaccccaatatacccagaaaatggtctattcataaagttattggcaaagaatcagtcaaaatttgatatgcacgtatcgaactgaacgtcaaaatgtgaagaaattgcaaaaacaaaaatccaacaaccaaccaactcgcttaaatacctatactagtatgacggatggcctgtacacacacccccctcttttaagtaagtgttaataagatacattttttgcatagatacatttatattcgattgtgtgcttatatcatgttgctaatggactgcgctataacaagtgtttttttatgcgatttaaagtgagaacaacacagataaatcagtggaaataattttgacatccttgtagtcttttagtctcctagttatgtgatttcgacacacctaattagcat
gi|9 : cactgataatcagtaaggaccaaacttttctggaaatgggatggttgatattctcctacaagtaattttttcttcaagtatatctatttaggattaaaataagtgttgtatatgaaaattatatacctagctgttgtcatggaaacaccagtcaaataaagcatatcatgaaaatttaggccccacaggaaaatagcccactggaaacatttctaaatgcactagatgtacacttcactttttaaaaaaacgttcggatgtatggggaatttttttaaaacatagatgtttaagattgtatcaaaaagaacatttaagggctaattttcagtaaaaatgacaaataattacccccctttctgcttgtattgtaaaaaaaagtcttgatgaattgTCTTT-C-GTTTGTT-TG--AAAAAAAATGAAGCACATTATACTTGGACCA-CAACTTC--AAAA---TTA-TAG--AAT-G--GCTCA--AGAA-ATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAACAAAAAAAAATCA--CTTT--GAGGCTGA--TT-T-TAAACT-GG-C--CCTCC-ATT-G-A--TTG-TTCT-ATAA-A-CAAA------G-----AGAGAAA--CAAGA---G-C-A-A-CA----GG-TACCAGTTTA-T
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACACTGATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTTGATATTCTCCTACAAATATTTTTGTCTTCAAGTATGCCTATAGACTCTATTCACGCGTCGGCCATAAAAATACGAAAACGAGGCTGCCTATTTAGTATTAAAATAAGTTGTATATACAAATTATATTCCTAGCTGTTGTCATGGAAACACCAGTCAAATAAAGCAAAACATGAAAATATAGGCCCCACAGGAAAATAGCCCACTGGAAACATTTCTAAATGCACTAGACATACACTTCACTATTTAAAAAAAAGTTTGGATGTATCGGGATTTTTTTTAAAAACTTAGATGTTTATTAAAGATTGTATAAAAAAGAACATTT
Unaligned ( gi|13 ): TTGTTGGAAATTGGGATGTTTGATATTCTCTTCAAAGAATTTTTCTTCAAGTATGCTATTTAGTATTAAAAATAAGTTGTCATATAAAAATTATATTCCTCAGCTGTTTGTCATGGAAACACCAGTCAAAGTAAAGCAAAACATGAAAAATATAGGCCCCACAGGAAAATGTCTGCACAGGAGACAATTTCTAATCAAGACATAACACTTCATTTTTAAAAATAAAAGTTGGATGTATGGGGATTTTTTTTAAAACTTAGATGTTTTAAGATGTATCAAAAAGAACAGTTTTTAAGGGCTGATTTCAGTAAAAATGCAAATACCGTACACCCCTTTTTCTTGCTTGTATTAAAAAAAGATTCTGAG
Unaligned ( gi|19 ): ACACTTCACTTTTTAAAAAAAAGTTCGGATATATGGGGATTGTTTTTTAAACCTAGATGTTTAAGATTGTATAAAAAAAGAACATTTTAGGGATGATTTTCAGTAAAAATGGCAAATAA
Unaligned ( gi|21 ): ACACTGATTATCTTTAAGGACCAAAATTTGCTGGAAACGGGATGTTTGATATTCTCCTACAAGTAATTTTTTTTCTTCAAGTATGCCTATTTAGTATTAAAATAAGTCGTATATAAA
Unaligned ( gi|22 ): TATTAGAATAAGTTGTATATAAAAATTATATTCATAGATGTCATGGAAACACCAATCAAATAAAGCAAACTTTGAAAATGTAGGCCCCACAGGAAAAGAGCCTACTG
Unaligned ( gi|23 ): AACACTGCTATATCTGTAAGCCAAATTGCTGGAAATTGGGAGTTTGATATTCTCCTTCAAGTAATTTTTTCTTCAAGTTAGCCTATTTAGTATTAAAATAAGTTGT
Unaligned ( gi|24 ): AACACTGATTATAAGGACCAAAATTTGCTGGAATTGGAATGTTTGATATTCTTCTACAAGTATTTTTTTCGCAAGTATGCCCATTTAGTAATTTAAAATAAGT
Unaligned ( gi|25 ): ATTTCTAAAAGCACTAGACATACACTTCACTTTTAAAAACATTCGGATGTATGGAGATTTTTTAAAAAAAAACTTAGATGTTTAAGATTGTATC
Unaligned ( gi|26 ): TGGCTCGAGAAATAGTGTTTTCACTACACTTGAAAATACAGATAGGATAAAACCGGTGATTCCGGAATATGGGCAATACTAACCTATA
Unaligned ( gi|33 ): GGCCTTAATAAAATTTAGTGAAATCGTTTATATAAATACTTGCAAATTCTTTTATCAGTCTT
Unaligned ( gi|35 ): CTCCGTGAAGCGTAAAGTGGTACCCCGTTGTTGGCTGCTACACCAA
Unaligned ( gi|39 ): TATATGTTGATGTGCTGTATGATATTTTATGTTTGCAAATAT
Unaligned ( gi|40 ): TGCGATTTAGAGAGCAGTAACTGAGGCCTAGCGGCTA
Alignments
lowQualScore : 1 1111 1 222 11 1 1 11 444444444444444444444444 11 1 22 111 22222222222 1 222 11 555555555555555 1111 1111 111 111 1111 1 3333333 2222 3333 111 1 111 2 11 11 222222 1 333333 111 111 1 1 1 111 1 1 1 1 1
lowQualScore : 1 5 77 4444 5 1 1 000 77 33 1 77 77 5 5 5 1 5 5 5 55 5 999999 66 66 5 4 22 777 77 4 2 55 111111111111111111111111 33 444 7 2 666 2 2 88 5 66 1 5 44 5 5 5 5 0 333 5 5 5 5 77777777777 5 0 1 3 99 99 7 7 6 1 6 0 5 8 000 5 5 33 5 3 1 2 1 1 6 77 5 5 4 666666666666666 2222 6 5 1 1 2222 5 666 5 777 4 777 4 4444 99999 4 5 5 5 5 3 99 1 3333333 6 1111 3 5 6 6 6 6 6 6 3333 6 5 888 3 6 3 6 99 6 0 5 0 77 555 5 77 77 77 8 8 0 8 11 8 8 11 0 222222 3 3 3 3 0 666666 333 777 0 3 0 0 777 3 0 0 66 0 3 0 0
lowQualScore : . . .. .... . . . ... .. .. . .. .. . . . . . . . .. . ...... .. .. . . .. ... .. . . .. ........................ .. ... . . ... . . .. . .. . . .. . . . . . ... . . . . ........... . . . . .. .. . . . . . . . . ... . . .. . . . . . . . .. . . . ............... .... . . . . .... . ... . ... . ... . .... ..... . . . . . . .. . ....... . .... . . . . . . . . .... . . ... . . . . .. . . . . .. ... . .. .. .. . . . . .. . . .. . ...... . . . . . ...... ... ... . . . . ... . . . .. . . . .
lowQualScore : 4 7 99 3333 7 4 7 000 44 66 4 99 99 0 7 7 4 0 0 0 11 0 888888 99 99 0 4 44 999 55 4 2 33 888888888888888888888888 11 111 1 4 555 4 5 44 7 77 9 0 99 0 6 0 0 1 888 7 7 7 7 11111111111 7 7 0 5 22 22 3 3 7 0 7 6 0 4 000 7 7 66 7 0 0 5 0 0 7 99 7 7 3 000000000000000 1111 6 7 7 4 6666 7 333 7 555 4 000 0 0000 33333 4 7 7 7 7 3 22 0 3333333 7 5555 2 7 7 7 7 7 7 7 8888 7 7 333 2 7 2 7 22 7 8 0 6 99 666 0 99 99 99 0 0 0 0 00 0 0 00 8 222222 2 2 2 2 0 000000 555 555 0 2 0 0 555 2 0 0 55 0 2 0 0
consensus : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA-AAAATAAATTCA--CTTT--GAGGCTGA-TTT-T-TAAACTGG-TACCCC-GTT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAGA---GTC-A-ACAG---GG-TACCAGTTT-ATGCCTGA-TCTC-NAACAAGTTAT-TTCCCTTACTTGAAACT-CTTTTAAGT-TAGAAA-CACAT---TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAATT-CANGGTGA-AAAGGATGAATTGTAAATTAAAAAGTC---A-GTGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTT-GGCTGAAATTAGA--CTTG-TTG-CTGGTTTGATAACAAGAAAATT----TC-GT-G----ATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
Reference ( family-664 ) : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA-AAAANAAATTCA--CTTT--GAGGCTGA-TTT-T-TAAACTGG-TACCCC-GTT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAGA---GTC-A-ACAG---GG-TACCAGTTT-ATGCCTGA-TCTC-NAACAAGTTAT-TTCCCTTACTTGAAACT-CTTTTAAGT-TAGAAA-CACAT---TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAATT-CANGGTGA-AAAGGATGAATTGTAAATTAAAAAGTC---A-GTGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTT-GGCTGAAATTAGA--CTTG-TTG-CTGGTTTGATAACAAGAAAATT----TC----G----ATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|1 : TACGTTTTGTT-TG--AAAAA---TGAAGCACAT-ATG------------ATTTCTCAAA----TTA--AG--AAT-G--GGCTA--GAAATATTTC-TTTTATAAGTAGG-T-A-TG-GAAAATATA-AAA-AAGATA--------CTTT--GAGGTTGAATTT-T-GAAACGGG-T-CCCC---T-GATATTG--TGCTTA-AA-A-CAAA------G-----AGAGAGA---AAGA---GTCAA-ACAG---GGATTCCAGTTT-ATGGCTGA-TCTC-TAACAAGTTA--TTCCCTTAC-TGAAACT-TTTTC---TGTAG-AA-CCCATG--TTTAG-GTATG-GTAAACC-AACTTGTG-----------ACAT---G-CAGAAGACACTCTCTAATA-TTTGTTTTTAAATTAACTC-GT--A---TTTG-TTTCTTAATT-CAAGGTGA-AAAGGATGAATTGT-AATT--AAAGTCAGAA-GTGG-AATTTTGCATAAGTGAA-TTG-CTTATGATATTGG-AAGCTTTTGGGCTG-AATTATATTCTTGTTTG-CTGGTTTGATAACAAGAACATTCAGGTA----G----AT-TACATTAT----TTTTATTTGCA-ATGAATAGGTTTTTTG-CT-AAGGACAGTTTTTGGCAGTT-TG---AAAGAAGT-GTAACTAG---C-TTGAT----AT-A---AACAG-TTTGCCG-ATCACTAAAT-ATT-GAATCTTC-AGGCAG-TTTT--G-CCACAATA-------TA-CA-----------CGTAT-AG-AT-AAGGGCATTAAGGGGCTTAC-ACT----TCATT-GTATGT-TAATATTTT---TT-TTTCATTGAGATA-GGAT-------AAT--ACTA--ATGATTCTAATAATCGGAGT-AACAAAACCAGTTGCTTTTAGCTATGA----GTCATAA-TTGA--TATGAC-TTC--AA--T
gi|10 : actgattaatctgtaacgaagccacatttgctggaaatgggatgtttgatatctccttaaaggtagatttttttttcaagttgcgatttagtattaagaataagagtgtaatataataaatttaatcctagctgttgtaatggaaactacagtcaaacaaagcaaaacataaaatagcccccaaggaaaatagcaaatggaaacattatgctagaagaatgcactaatagcatacactgactttttaaaaaaaaaagttcggatggtatgggaattttttttataaaagttagatgttttacagattgtagtcaaaaaagaaacattttagagtcattttcagtgaagataagcaaaataattacaccctttttctgcctgtactttaaaaaaaatgtcggaggaatttgGAAACAAGGATA-T-AAATAAAATCAC-AATTGATTAATACCTTGAGTATT-ACATGTTC-TTA-TAA---CTTTATACATTTCAT-ACT-TTATTCTGTCGATTTTGA-GAGGCAGGAA
gi|11 : TGTAAATTAAAA-GTC---A-GTGA-A--TTTGCATTA-TTAGCTTGctgagccttagggcggtattccagtttttgaactacgccatacccatgggtcccagcccataatacccatgggatggtctatgtcaataaaattatttggcaaaaaatctatatgaaaaaattttgatatgcacgtatcgaactgaaacgtcaaattgaaaatgctattataaacaaaatcacaacaaaccaactcgctaaatacctggctatactagtatacggatggctgtaacaacccccccctcctcttttaagtaagtggttaaaataagcatataatttttcatagtacagtatatgtgattttagctattactcattcctaatgatggcgcatcgaataaaagtgtggatacacacagaataaatcattgaaaatatttttacatcttgtgtttagtcccttagaaatgtgatttgacacctaattaac
gi|11 : ATTAG---CTTG-TTG-CTGGTTTCATAACAAGAAAATA----TC----TCTACATCTACATTAT----TTTTATGTGCA-ATGAGTACGATTTT-G-AT-AA-GAC--TTTCT-GCAGTTATG---AAAGAAAT-ATAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-AACACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------CA-TAA--TTTTT-GTCCTAT-GC-AT-AG-GATATT-AGGGGCTTAC-ACTTC----ATT-ATATGTGCAATATTTT---TCAATTAATTTACATA-ATATG-TGAAAAAG--ACCA-CACGATTCTAAAGA-CGGAGTAAAGAAAACCAGTT--CTCTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAttgctggtttcataacaagaaaatatctctacatctacattatttttatgtgcaatgagtacgattttgataagactttctgcagttatgaaagaaatataactagcttgatataaacagctttgccgaacacaacatattgaacttcaggcaagtttgcccacaatacataatttttgtcctatgcataggatattaggggcttacacttcattatatgtgcaatatttttcaattaatttacataatatgtgaaaaagaccacacgattctaaagacggagtaaagaaaaccagttctctagctatgacgtcataattgatatgactttcaatgacgtttga
gi|14 : tgtaaattaaaagtcagtgaatttgcattTAACTAGAGTCGTTGAT----A------AACCACTTTGCCGGACCACAACAT-ATTGGAA-CTTCAAGGCAAGGTTTGAGCCCAAGATACGT----TA-TAGTTTTTTTTGTC-TATAGCGATAAA-GGC----AGTGGCTTAC-ACT----TCATT-TTATGTCGAATATGTTATGTCAATCTAAT--GATAGATATGTTGATACAGTTGTCATCATGTTGCTAATGA-CTGAGT
gi|15 : AAT-GTAACTAG---C-TTGAT----AT-A---AACAACTTTGCCG-A
gi|15 : CGATTCTAAAGA-CGGGGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CAT-CA-TGGA--TGTA-CTTTA-GC--TATATT-CA--GAGATCTTAGAGAAAGAAAACTGGAATGAAAGAttctaaagacggggtaaacaaaaccagttctttagctatgacgtcataattgatatgactttcaatgacgtttgaatgtacatgtgacgacatcatggatgtactttagctatattcagagatcttagagaaagaaaactggaatgaaaga
gi|16 : aatgtaactagcttgatataaacaactttgcCGATTCTAAAGA-CGGA---AACAAA-CCA--T--CTTTACCTATTACACCGTCATAACTTGA--TATGACTTTC--AA--TAACGTC--AAT-TACACTGTGACGA-CATCCA-TGCAACTAAA-CTTTA-GCCTCATAATGCA---GAATCTTAGA-AAAGAAA
gi|17 : gataaataaacaaacccgtccTAC-ATTTCA-TC-TT-ATATGTACAATATTTTT--TCAATTCAATTAGATA-ATATG-CGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTG--TTTTAGCTATGAC---GTCATAA-T
gi|18 : TT-T-TAAACTTG--ACCCCTATT-GAT-TTG--TGCTAA-AA-A-CAAT------G-----AGAGAGA--CAAGA---ATC-A-TC-G---GG-TACCAGTTT-ATG-CTGA-TCTA-TAACAAGTTAT-TTCCCTTAC-TGAAACT-CTTTTAAGT-agggcgagaaagtttcgaagttac
gi|2 : aaTCTTTACCTTTTGTTATGGTAAAAAA--TGAA-CACAT-A-ACTTGACCTAACAACTTCTCAAAAAAATTA-TACC-AAT-G--ACTCACAAGAA-ATATC-TTATACAAG-ATG-C-A-AAAGAAAATACA-AAA-AAAATAAAT-CAGCCTTTTCGAG-CTGA-TTT-T--AAACTTTCTCCCCC-ATG-TAA-TTG--TGCT-A-AA-AACAAAACTAATG-A---GAAGAAA--CAAGACAAGTC-ACAAAA---AC-TACCAGTTT-ATGC-TGA-TCCA-AAACAA-TTATGCCCCCTTACT-GAAACTTCTTTTAA---TAGAAATCACATAGTTCTAGT-TA-G-GCAAA-CCAACTT--------------ACATGCAG-CATAA-ACACTCC---ATACT--G---CTTAATTAAT-CAGT--AC--TTTGTTT-CTTAATTTCAAGGTGACAAAAAATGAATT---AATTAAA--GTCCCAACATGATA--TTTGCACAA-T-AGCT-GC--TAT-ATATT-ACATACTTTT-GGCTGAAATTTGA--CT---TTGTCTCCTTTGATAACAA-AAAATT----TCTGA-A----ATCTACATTATTATATTTTATGTGCACATAAATAAATTATCTGAATAAA-GAC----TTT-GCAGTTATGACAAAAAAAATAATGACTAG---C-TTGATAA--AT-A---AACaattatcagttaattttattt
gi|20 : ccactgatatatcttaaggacccaaaaaaattttgctggaaacggtagtttgatactcactacatcagttacattttgttttcttcaagtaggcctaactagtattaaaatacatcctatataaaaataacttctcctagctcgttgtcagctggaaacaccagtcaaataaagcaaaatacataaagatagacccgacagaaaatagcccactgaacacatttcttaacaaccataaacaatcatacaccttcacttctttaaaaaaaagtcacattatgggaattttttttctaaatcattaacaccatatggttaacttcgcctttttgaatgtttaacagataaaaagaacaattttagcgatttcacagtaaaaagtccgcccaacaataaacccccttcttgctatttaacaagaattgtgaaaatt-A-TA-GAAAATACA-AAA-AAAG----TTCA--CTTT--GAGGCTGA-TTT-T-T-AACTGG-TCCCCC-ATT-GAT-TTG--TGCTAA-AA-A-CAAA------G-----AGAGAGA--
gi|27 : gacattttttttatttctggtataactgtgttaaa-TAAACTGG-TACCCC-GTT-GAT-TTGG-TACT-A-CACA-CAAACTC---G-A---GAAAAG---CGAGA---GCC-A-ACAG---GG-TATCAGTTT-At
gi|28 : cAACTGGATACCTC-GTTTGAT-TGG--TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAGA---GTCGA-ACAG---GT-TACCAGTTT-a
gi|29 : AACTGGATACCTC-GTTTGAT-TGG--TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAGA---GTCGA-ACAG---GT-TACCAGTTT-
gi|3 : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGGACAT-ATACTTGACCTA-CAACTTCACAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGGCC-A-TA-GAAAATACACAAA-AAAAAAAATTCA--CTTT--GA-GTTGA-TTTAT-TAAACTGG---CCCC-ATT-GAT-TTG--TGTT-A-AA-A-CAAA------G-A---AGAGAGA--CAAGA---GTC-A-ACAG---GG-TACCAGTTT-ATGCCTGA-TCTC-TAACAAGTTAT-TTCCCTTACTTGAAACT-CTTTTAAGT-TAAAAA-C-CAT---TTTAGTGTA-G-GTAAA-C-AAC-TGTG-----------ACATGCAGAC---AGACACTCTTAAGTACTTTGTTTCTT-ATT-ATTCAGTGGACGATTTGTTTTCTTAATT-CATGGTGA-AAAGGATGAATTGTAAATTAAAAAGTC---A-GTGA-A--TTTGCATAA-TAAGCTTGCCTTATGATATTGATAAGGTTTT-GGGTGAAATTAGA--CTTG-TTG-CTGGTTTGATAATAA-----------------G----ATCTATATTAT----TTTTATTTGCC-TTGAATAAGTTTTTTG-CT-AA-GAC--TTTTT-GCAGTTATA---GAAGAAAT-GTAACTAG---C-TTGAT----ATAA---AACAGCTTTGCCG-ACCACAACAC-ATT-GAA-CTTC-AGGCAA-GTTT--GTCCACAATATTATTTTTA-TAG---TTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTCGATCATT-ATATGTACAATATTTT---TCAATTCAATTAGCTA-ATATG-TGAAAAAG--ACTA-CATGATTGTAATGA-CGGAGTGAACAAAACCAGTG--CTTGAGGTATGAC---GCTATAA-ATGA--TATGACTTGA--AA--TGGCGATTGACGGTACA-GGTGACGA-CAT-GA-TGGA--TGTA-CTTTA-GC--TATATT-TA--GGGATCTTAGAGAAAGAAAACTTGAATGAAAGAAACAAGGATAAT-AAATAAA----TAAAT-AATTAATAG---GAGTATT-ACATATTCTTTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|30 : AACTGG-TACCCCCATT-GAT-TGG--TGCT-A-CACG-CAAACTT---G-A----GAGAAG--CGAGA---GCC-A-ACAG---GA-TACCAGTTT-A
gi|31 : tAACTGG-CACCCT-GTT-GAT-TGT--TGCT-A-CACA-CAAA------C-G---AGATAGAAGTGAGA---GCC-A-ACAG---GG-TACCAGTTT-
gi|32 : CAGTTATG---AGAGAAAT-GTAACTAG---C-TTGATTTTTAT-------TAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-
gi|34 : AACTGA-TACCCC-GTT-GAT-TTG--TGCT------A-C-----------A---CGAGAAG--CGAG----GTC-A-ACAGA--GG-TACCAGTTT-A
gi|35 : -TAAAGTGG-TACCCC-GTT-G---TTGGCTGCT-A-CA-C-CAA
gi|36 : ctccgtgaagcgACTGG-TACCCC-ACT-GAT-TGG--TGCT---------------------------------CGAGA---GGC-A-ACAG---GG-TACCAGT
gi|37 : AGAAA-CACAG---TTTAATGTA-A-GTAAA-C-AACTTGTG-----------ACATGCAG-CAG
gi|38 : ---AGAGAAG--TGAGA---GCC-A-ACAGCCTGG-TACCAGTTT-AT
gi|4 : actcgAACAA--TAT-T-CCCTTACT-GAAAC--CTTTTAA-T-TAGAAA-CACAT---TC--ATGTA-GAGTAAA-C-AACTTGTGACCCAAGTGTGACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTG-TTTCTTAATT-CATGGTGA-AAAAGATGAATTGT-AATTAAAA--TC---A-GTGA-AT-TTTGCATAA-TGAGC-TGCCTT----TATTAACAACTTTTT-GGCTGAAATTAGA--CTTG-TTG-CTGGTTTGATAACAAGAAAATT----TCAGT-G----AACTACATTAT----TTTAAT-TGCA-ATGAATAAG-TTTTTG-CA-AA-GAC---TTTT-GCAGTTA--------------GTAACTAG---C-TTGAT----AT-AATTAACAGC-TTGCCG-ACCACAACATAATT-GAA-CTTC-AGGCAAGGTTT--GCCCACAATA-------TATTAG---TATTTGTCTTAT-GC-AT-AG-GGCATT-AGGGGCTTACGACT----TCATTGATATGTACAA-ATATT---TCAATTCAATTAGATA-A-ATG-TGAAAAAG--ACTA-CATGATTCTAATGA-CGGAGT-AACAAAACCAGTT--C-TTATCTATGAC---GTCATAA-TTGA--TATAAATTTCAAAA--TGACGTTTG-ATGTACA-TGT---GA-CAT-CA-TGGA--TGTCTCTTTG-GC--C-TATTATA---GGATCTTAGAGAAAGAAAACTGGAGTGAAAGAAACAAGGATAAT-AAATAAA----TCAAT-GATTAATAC---GAGTAAT-ACA-GTTC-TTT-AAA---CTTTAGACA-TTCAT-ACT-TT-TTCTG-CGA-TCTGA-G-GGCAGTAAag
gi|41 : tAACTGG-TACCCC-ATT-GAT-TGG--TGCT-ACAC-A-CAAA------ctgaggcctagcggctag
gi|42 : tGAGA--CACGA---GTC-A-ACAG---GG-TACCAGTTT-ATACc
gi|5 : TAT-TTTTGTT-TG--AAAAAA--TGAAGCACAC-ATACGTGACCTA-CAACTTCTCAAAA---TTA-TAG--AATTG--GCTCA--AGAATATTTC-TTTTATGAG-AGG-CTA-TA-GAAAATACC-AAA-AAATG---TTCA--CTTT--AAGGCTGA-TTT-T--AAACTGG-TCCCCC-ATT-GAT-TTG--TGCT-A-AA-A---AT------A-A---AGAGAGA--CAAGA---GTC-A-ACAG---GG-TACCAGTTT-ATGC-TAA-TATC-AAACAACTTAT-TTCCCTTACT-GGAACT-CTTTTAAGT-TAGAAA-TATAT---TTTAGTGTA-G-GAAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTCTTTCTTTCTTAATTCAGT--AC--TTTGTTT-CTTAATC-CATGGTGA-AAAGGATGAATTGTGAAT-AAAAAGTC---A-GTGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTT-GGCTGAAATTAAA--CTTC-TTG-CTGATTTGATAACAAGAAAATT----TCAGTAG----ATCTACATTAT----TTTTATTTGCA-ATGAATAAGT-------------G------TTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TGGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-TTTT--GCCCACAGTG-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGG
gi|6 : ataattacaccctttttctccttatatttttaaaaaaaatgtctgaggaatgTCTTTAC-TTTTGTT-GG--AAAAA----GAAGCACAT-ATACTTGACCTAACAACTTCTCAAAAAGATTAATAACAAAT-GCGACTCA--AGAATATTTCCTTTTACAAG-AGG-C-AATG-AGAAATACA-AAA-AAAATAAAATCA--CTTT--GAGGATGA-TTT-T--AAACTGG-TCCCCA-TTT-GAT-TTG--TGCT-A-AA-AACAAA------G-AGAGAGAGAGA--CAAAA---GTC-A-ACAA---G--TACCAGTTTAATG-CTGATTCTCAAAACAA-TTAT-TTCCCTTAC-TGAAACT-CTTTTAAGT-TAGAAA-CACAT---TTTAGTGTA-G-GCAAA-C-AACTTGTG-----------ACATGCAG-CATAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTT-TTAATT-CAAGGTGA-AAAAGATGAATTGTAAATT-AAAAGTC---A-GTGA-A--TTTGCACAA-TGAGCTTGCTTTATGATATTGACAAGCTTTT-GGCTGAAATTGGA--CTTG-TTG-CTGGTTTGATAACAAGAAAATT----TCTGTAG----ATCTACATTAT----TTTTATGTGCA-ATGAATAAATTTTTTG-AT-AA-GAC--TTTTT-GCAGTTATGAAAAAAAAAAT-GTAACTAG---C-TTGAT----AT-A---AACAACTTTGCCG-A
gi|7 : aacattttagggctgattttcagtaaaaattgcaaataattacccccttttctgcttgtattttaaaagaatgtggttgaggaattgTATGATCG-GTCA-AA-TTGAATTATGACTTTC--AAAATGACGTTTGAATGTACA-T-TGACGAACATCAAATGGA--TGTA-CTTTAAGC--TATACTGTATAGGGACCTTAAGAAAAGAAAACTGGAA-GAAAGAAACAAGGA-AATAAAATCAA----T-AA---ATTAATAC---GAGTATTAACATATTC-CTTATAAAACCTTTAGACATTTCATAACTGTTA-TCTG-CGATTCTGAGG-GGCAGTAt
gi|8 : CTTTAC-TTTTGTT-TG--AAAAAA---AAAGCACAT-ATACTTGACCTA-CATCTTCTCAAAA---TTA-AAG--AATGG--GCTCA--ATAATATTTC-TTTAATAAG-AGGCC-A-TA-G-AAATAC-------AAATAAATTCA--CTTT--GAGGCTGA-TTT-TAGAAACTGG-TTCCCC-ATT-GAT-TTG--TGCT----A-A-CAAA-------------------------A---GTC-A-ACAG---GG-TACCAGTTT-ATG-TTGA-TCTC-AAACAAGTTAT-GTCCCCTAC-TGAAACT-CTTTTAAGT-TAGAAA-CACAT---ctgaggccttatgcggctagtccatttgaactagcctcccctccgggtcccaccccaatatacccagaaaatggtctattcataaagttattggcaaagaatcagtcaaaatttgatatgcacgtatcgaactgaacgtcaaaatgtgaagaaattgcaaaaacaaaaatccaacaaccaaccaactcgcttaaatacctatactagtatgacggatggcctgtacacacacccccctcttttaagtaagtgttaataagatacattttttgcatagatacatttatattcgattgtgtgcttatatcatgttgctaatggactgcgctataacaagtgtttttttatgcgatttaaagtgagaacaacacagataaatcagtggaaataattttgacatccttgtagtcttttagtctcctagttatgtgatttcgacacacctaattagcat
gi|9 : cactgataatcagtaaggaccaaacttttctggaaatgggatggttgatattctcctacaagtaattttttcttcaagtatatctatttaggattaaaataagtgttgtatatgaaaattatatacctagctgttgtcatggaaacaccagtcaaataaagcatatcatgaaaatttaggccccacaggaaaatagcccactggaaacatttctaaatgcactagatgtacacttcactttttaaaaaaacgttcggatgtatggggaatttttttaaaacatagatgtttaagattgtatcaaaaagaacatttaagggctaattttcagtaaaaatgacaaataattacccccctttctgcttgtattgtaaaaaaaagtcttgatgaattgTCTTT-C-GTTTGTT-TG--AAAAAAAATGAAGCACATTATACTTGGACCA-CAACTTC--AAAA---TTA-TAG--AAT-G--GCTCA--AGAA-ATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAACAAAAAAAAATCA--CTTT--GAGGCTGA--TT-T-TAAACTGG-CCCTCC-ATT-GA--TTG--TTCT-ATAA-A-CAAA------G-----AGAGAAA--CAAGA---G-C-A-ACA----GG-TACCAGTTT-AT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACACTGATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTTGATATTCTCCTACAAATATTTTTGTCTTCAAGTATGCCTATAGACTCTATTCACGCGTCGGCCATAAAAATACGAAAACGAGGCTGCCTATTTAGTATTAAAATAAGTTGTATATACAAATTATATTCCTAGCTGTTGTCATGGAAACACCAGTCAAATAAAGCAAAACATGAAAATATAGGCCCCACAGGAAAATAGCCCACTGGAAACATTTCTAAATGCACTAGACATACACTTCACTATTTAAAAAAAAGTTTGGATGTATCGGGATTTTTTTTAAAAACTTAGATGTTTATTAAAGATTGTATAAAAAAGAACATTT
Unaligned ( gi|13 ): TTGTTGGAAATTGGGATGTTTGATATTCTCTTCAAAGAATTTTTCTTCAAGTATGCTATTTAGTATTAAAAATAAGTTGTCATATAAAAATTATATTCCTCAGCTGTTTGTCATGGAAACACCAGTCAAAGTAAAGCAAAACATGAAAAATATAGGCCCCACAGGAAAATGTCTGCACAGGAGACAATTTCTAATCAAGACATAACACTTCATTTTTAAAAATAAAAGTTGGATGTATGGGGATTTTTTTTAAAACTTAGATGTTTTAAGATGTATCAAAAAGAACAGTTTTTAAGGGCTGATTTCAGTAAAAATGCAAATACCGTACACCCCTTTTTCTTGCTTGTATTAAAAAAAGATTCTGAG
Unaligned ( gi|19 ): ACACTTCACTTTTTAAAAAAAAGTTCGGATATATGGGGATTGTTTTTTAAACCTAGATGTTTAAGATTGTATAAAAAAAGAACATTTTAGGGATGATTTTCAGTAAAAATGGCAAATAA
Unaligned ( gi|21 ): ACACTGATTATCTTTAAGGACCAAAATTTGCTGGAAACGGGATGTTTGATATTCTCCTACAAGTAATTTTTTTTCTTCAAGTATGCCTATTTAGTATTAAAATAAGTCGTATATAAA
Unaligned ( gi|22 ): TATTAGAATAAGTTGTATATAAAAATTATATTCATAGATGTCATGGAAACACCAATCAAATAAAGCAAACTTTGAAAATGTAGGCCCCACAGGAAAAGAGCCTACTG
Unaligned ( gi|23 ): AACACTGCTATATCTGTAAGCCAAATTGCTGGAAATTGGGAGTTTGATATTCTCCTTCAAGTAATTTTTTCTTCAAGTTAGCCTATTTAGTATTAAAATAAGTTGT
Unaligned ( gi|24 ): AACACTGATTATAAGGACCAAAATTTGCTGGAATTGGAATGTTTGATATTCTTCTACAAGTATTTTTTTCGCAAGTATGCCCATTTAGTAATTTAAAATAAGT
Unaligned ( gi|25 ): ATTTCTAAAAGCACTAGACATACACTTCACTTTTAAAAACATTCGGATGTATGGAGATTTTTTAAAAAAAAACTTAGATGTTTAAGATTGTATC
Unaligned ( gi|26 ): TGGCTCGAGAAATAGTGTTTTCACTACACTTGAAAATACAGATAGGATAAAACCGGTGATTCCGGAATATGGGCAATACTAACCTATA
Unaligned ( gi|33 ): GGCCTTAATAAAATTTAGTGAAATCGTTTATATAAATACTTGCAAATTCTTTTATCAGTCTT
Unaligned ( gi|39 ): TATATGTTGATGTGCTGTATGATATTTTATGTTTGCAAATAT
Unaligned ( gi|40 ): TGCGATTTAGAGAGCAGTAACTGAGGCCTAGCGGCTA
Alignments
lowQualScore : 1 1111 1 222 11 1 1 11 444444444444444444444444 11 1 22 111 22222222222 1 1 222 11 555555555 1111 1111 111 111 1111 1 3333333 2222 3333 111 1 111 2 11 11 222222 1 333333 111 111 1 1 1 111 1 1 1 1 1
lowQualScore : 1 5 77 4444 5 1 1 000 77 33 1 77 77 5 5 5 1 5 5 5 55 5 9999 66 66 5 4 22 777 77 4 2 55 111111111111111111111111 33 444 7 2 666 2 2 88 5 66 1 5 44 5 5 5 5 0 333 5 5 5 5 77777777777 5 0 1 3 99 99 5 6 1 6 0 5 8 000 5 5 33 5 3 1 2 1 1 6 77 5 5 4 1 222222222 2222 6 5 8 6666 5 666 5 777 4 777 4 4444 99999 4 5 5 5 5 3 99 1 3333333 6 1111 3 5 6 6 6 6 6 6 3333 6 5 888 3 6 3 6 99 6 0 5 0 77 555 5 77 77 77 8 8 0 8 11 8 8 11 0 222222 3 3 3 3 0 666666 333 777 0 3 0 0 777 3 0 0 66 0 3 0 0
lowQualScore : . . .. .... . . . ... .. .. . .. .. . . . . . . . .. . .... .. .. . . .. ... .. . . .. ........................ .. ... . . ... . . .. . .. . . .. . . . . . ... . . . . ........... . . . . .. .. . . . . . . . ... . . .. . . . . . . . .. . . . . ......... .... . . . .... . ... . ... . ... . .... ..... . . . . . . .. . ....... . .... . . . . . . . . .... . . ... . . . . .. . . . . .. ... . .. .. .. . . . . .. . . .. . ...... . . . . . ...... ... ... . . . . ... . . . .. . . . .
lowQualScore : 4 7 99 3333 7 4 7 000 44 66 4 99 99 0 7 7 4 0 0 0 11 0 9999 99 99 0 4 44 999 55 4 2 33 888888888888888888888888 11 111 1 4 555 4 5 44 7 77 9 0 99 0 6 0 0 1 888 7 7 7 7 11111111111 7 7 0 5 22 22 5 7 0 7 6 0 4 000 7 7 66 7 0 0 5 0 0 7 99 7 7 3 4 444444444 1111 6 7 7 1111 7 333 7 555 4 000 0 0000 33333 4 7 7 7 7 3 22 0 3333333 7 5555 2 7 7 7 7 7 7 7 8888 7 7 333 2 7 2 7 22 7 8 0 6 99 666 0 99 99 99 0 0 0 0 00 0 0 00 8 222222 2 2 2 2 0 000000 555 555 0 2 0 0 555 2 0 0 55 0 2 0 0
consensus : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA-AAAATAAATTCA--CTTT--GAGGCTGA-TTT-T-TAAACTGG-TACCCC-GTT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAGA---GTC-A-ACAG---GG-TACCAGTTT-ATGCCTGA-TCTC-NAACAAGTTAT-TTCCCTTACTTGAAACT-CTTTTAAGT-TAGAAA-CACAT---TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAATT-CANGGTGA-AAAGGATGAATTGTAAATTAAAAAGTC---A-GTGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTT-GGCTGAAATTAGA--CTT-G-TTGCTGGTTTGATAACAAGAAAATTTCA-G-TAG--ATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
Reference ( family-664 ) : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA-AAAATAAATTCA--CTTT--GAGGCTGA-TTT-T-TAAACTGG-TACCCC-GTT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAGA---GTC-A-ACAG---GG-TACCAGTTT-ATGCCTGA-TCTC-NAACAAGTTAT-TTCCCTTACTTGAAACT-CTTTTAAGT-TAGAAA-CACAT---TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAATT-CANGGTGA-AAAGGATGAATTGTAAATTAAAAAGTC---A-GTGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTT-GGCTGAAATTAGA--CTT-G-TTGCTGGTTTGATAACAAGAAAATTTC--G-T-G--ATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|1 : TACGTTTTGTT-TG--AAAAA---TGAAGCACAT-ATG------------ATTTCTCAAA----TTA--AG--AAT-G--GGCTA--GAAATATTTC-TTTTATAAGTAGG-T-A-TG-GAAAATATA-AAA-AAGATA--------CTTT--GAGGTTGAATTT-T-GAAACGGG-T-CCCC---T-GATATTG--TGCTTA-AA-A-CAAA------G-----AGAGAGA---AAGA---GTCAA-ACAG---GGATTCCAGTTT-ATGGCTGA-TCTC-TAACAAGTTA--TTCCCTTAC-TGAAACT-TTTTC---TGTAG-AA-CCCATG--TTTAG-GTATG-GTAAACC-AACTTGTG-----------ACAT---G-CAGAAGACACTCTCTAATA-TTTGTTTTTAAATTAACTC-GT--A---TTTG-TTTCTTAATT-CAAGGTGA-AAAGGATGAATTGT-AATT--AAAGTCAGAA-GTGG-AATTTTGCATAAGTGAA-TTG-CTTATGATATTGG-AAGCTTTTGGGCTG-AATTATATTCTT-GTTTGCTGGTTTGATAACAAGAACA-TTCAGG-TAG--AT-TACATTAT----TTTTATTTGCA-ATGAATAGGTTTTTTG-CT-AAGGACAGTTTTTGGCAGTT-TG---AAAGAAGT-GTAACTAG---C-TTGAT----AT-A---AACAG-TTTGCCG-ATCACTAAAT-ATT-GAATCTTC-AGGCAG-TTTT--G-CCACAATA-------TA-CA-----------CGTAT-AG-AT-AAGGGCATTAAGGGGCTTAC-ACT----TCATT-GTATGT-TAATATTTT---TT-TTTCATTGAGATA-GGAT-------AAT--ACTA--ATGATTCTAATAATCGGAGT-AACAAAACCAGTTGCTTTTAGCTATGA----GTCATAA-TTGA--TATGAC-TTC--AA--T
gi|10 : actgattaatctgtaacgaagccacatttgctggaaatgggatgtttgatatctccttaaaggtagatttttttttcaagttgcgatttagtattaagaataagagtgtaatataataaatttaatcctagctgttgtaatggaaactacagtcaaacaaagcaaaacataaaatagcccccaaggaaaatagcaaatggaaacattatgctagaagaatgcactaatagcatacactgactttttaaaaaaaaaagttcggatggtatgggaattttttttataaaagttagatgttttacagattgtagtcaaaaaagaaacattttagagtcattttcagtgaagataagcaaaataattacaccctttttctgcctgtactttaaaaaaaatgtcggaggaatttgGAAACAAGGATA-T-AAATAAAATCAC-AATTGATTAATACCTTGAGTATT-ACATGTTC-TTA-TAA---CTTTATACATTTCAT-ACT-TTATTCTGTCGATTTTGA-GAGGCAGGAA
gi|11 : TGTAAATTAAAA-GTC---A-GTGA-A--TTTGCATTA-TTAGCTTGctgagccttagggcggtattccagtttttgaactacgccatacccatgggtcccagcccataatacccatgggatggtctatgtcaataaaattatttggcaaaaaatctatatgaaaaaattttgatatgcacgtatcgaactgaaacgtcaaattgaaaatgctattataaacaaaatcacaacaaaccaactcgctaaatacctggctatactagtatacggatggctgtaacaacccccccctcctcttttaagtaagtggttaaaataagcatataatttttcatagtacagtatatgtgattttagctattactcattcctaatgatggcgcatcgaataaaagtgtggatacacacagaataaatcattgaaaatatttttacatcttgtgtttagtcccttagaaatgtgatttgacacctaattaac
gi|11 : ATTAG---CTT-G-TTGCTGGTTTCATAACAAGAAAATATC--TCT-AC-ATCTACATTAT----TTTTATGTGCA-ATGAGTACGATTTT-G-AT-AA-GAC--TTTCT-GCAGTTATG---AAAGAAAT-ATAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-AACACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------CA-TAA--TTTTT-GTCCTAT-GC-AT-AG-GATATT-AGGGGCTTAC-ACTTC----ATT-ATATGTGCAATATTTT---TCAATTAATTTACATA-ATATG-TGAAAAAG--ACCA-CACGATTCTAAAGA-CGGAGTAAAGAAAACCAGTT--CTCTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAttgctggtttcataacaagaaaatatctctacatctacattatttttatgtgcaatgagtacgattttgataagactttctgcagttatgaaagaaatataactagcttgatataaacagctttgccgaacacaacatattgaacttcaggcaagtttgcccacaatacataatttttgtcctatgcataggatattaggggcttacacttcattatatgtgcaatatttttcaattaatttacataatatgtgaaaaagaccacacgattctaaagacggagtaaagaaaaccagttctctagctatgacgtcataattgatatgactttcaatgacgtttga
gi|14 : tgtaaattaaaagtcagtgaatttgcattTAACTAGAGTCGTTGAT----A------AACCACTTTGCCGGACCACAACAT-ATTGGAA-CTTCAAGGCAAGGTTTGAGCCCAAGATACGT----TA-TAGTTTTTTTTGTC-TATAGCGATAAA-GGC----AGTGGCTTAC-ACT----TCATT-TTATGTCGAATATGTTATGTCAATCTAAT--GATAGATATGTTGATACAGTTGTCATCATGTTGCTAATGA-CTGAGT
gi|15 : AAT-GTAACTAG---C-TTGAT----AT-A---AACAACTTTGCCG-A
gi|15 : CGATTCTAAAGA-CGGGGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CAT-CA-TGGA--TGTA-CTTTA-GC--TATATT-CA--GAGATCTTAGAGAAAGAAAACTGGAATGAAAGAttctaaagacggggtaaacaaaaccagttctttagctatgacgtcataattgatatgactttcaatgacgtttgaatgtacatgtgacgacatcatggatgtactttagctatattcagagatcttagagaaagaaaactggaatgaaaga
gi|16 : aatgtaactagcttgatataaacaactttgcCGATTCTAAAGA-CGGA---AACAAA-CCA--T--CTTTACCTATTACACCGTCATAACTTGA--TATGACTTTC--AA--TAACGTC--AAT-TACACTGTGACGA-CATCCA-TGCAACTAAA-CTTTA-GCCTCATAATGCA---GAATCTTAGA-AAAGAAA
gi|17 : gataaataaacaaacccgtccTAC-ATTTCA-TC-TT-ATATGTACAATATTTTT--TCAATTCAATTAGATA-ATATG-CGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTG--TTTTAGCTATGAC---GTCATAA-T
gi|18 : TT-T-TAAACTTG--ACCCCTATT-GAT-TTG--TGCTAA-AA-A-CAAT------G-----AGAGAGA--CAAGA---ATC-A-TC-G---GG-TACCAGTTT-ATG-CTGA-TCTA-TAACAAGTTAT-TTCCCTTAC-TGAAACT-CTTTTAAGT-agggcgagaaagtttcgaagttac
gi|2 : aaTCTTTACCTTTTGTTATGGTAAAAAA--TGAA-CACAT-A-ACTTGACCTAACAACTTCTCAAAAAAATTA-TACC-AAT-G--ACTCACAAGAA-ATATC-TTATACAAG-ATG-C-A-AAAGAAAATACA-AAA-AAAATAAAT-CAGCCTTTTCGAG-CTGA-TTT-T--AAACTTTCTCCCCC-ATG-TAA-TTG--TGCT-A-AA-AACAAAACTAATG-A---GAAGAAA--CAAGACAAGTC-ACAAAA---AC-TACCAGTTT-ATGC-TGA-TCCA-AAACAA-TTATGCCCCCTTACT-GAAACTTCTTTTAA---TAGAAATCACATAGTTCTAGT-TA-G-GCAAA-CCAACTT--------------ACATGCAG-CATAA-ACACTCC---ATACT--G---CTTAATTAAT-CAGT--AC--TTTGTTT-CTTAATTTCAAGGTGACAAAAAATGAATT---AATTAAA--GTCCCAACATGATA--TTTGCACAA-T-AGCT-GC--TAT-ATATT-ACATACTTTT-GGCTGAAATTTGA--CTTTG-T--CTCCTTTGATAACAA-AAAATTTC----T-GAAATCTACATTATTATATTTTATGTGCACATAAATAAATTATCTGAATAAA-GAC----TTT-GCAGTTATGACAAAAAAAATAATGACTAG---C-TTGATAA--AT-A---AACaattatcagttaattttattt
gi|20 : ccactgatatatcttaaggacccaaaaaaattttgctggaaacggtagtttgatactcactacatcagttacattttgttttcttcaagtaggcctaactagtattaaaatacatcctatataaaaataacttctcctagctcgttgtcagctggaaacaccagtcaaataaagcaaaatacataaagatagacccgacagaaaatagcccactgaacacatttcttaacaaccataaacaatcatacaccttcacttctttaaaaaaaagtcacattatgggaattttttttctaaatcattaacaccatatggttaacttcgcctttttgaatgtttaacagataaaaagaacaattttagcgatttcacagtaaaaagtccgcccaacaataaacccccttcttgctatttaacaagaattgtgaaaatt-A-TA-GAAAATACA-AAA-AAAGT----TCA--CTTT--GAGGCTGA-TTT-T-T-AACTGG-TCCCCC-ATT-GAT-TTG--TGCTAA-AA-A-CAAA------G-----AGAGAGA--
gi|27 : gacattttttttatttctggtataactgtgttaaa-TAAACTGG-TACCCC-GTT-GAT-TTGG-TACT-A-CACA-CAAACTC---G-A---GAAAAG---CGAGA---GCC-A-ACAG---GG-TATCAGTTT-At
gi|28 : cAACTGGATACCTC-GTTTGAT-TGG--TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAGA---GTCGA-ACAG---GT-TACCAGTTT-a
gi|29 : AACTGGATACCTC-GTTTGAT-TGG--TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAGA---GTCGA-ACAG---GT-TACCAGTTT-
gi|3 : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGGACAT-ATACTTGACCTA-CAACTTCACAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGGCC-A-TA-GAAAATACACAAA-AAAAAAAATTCA--CTTT--GA-GTTGA-TTTAT-TAAACTGG---CCCC-ATT-GAT-TTG--TGTT-A-AA-A-CAAA------G-A---AGAGAGA--CAAGA---GTC-A-ACAG---GG-TACCAGTTT-ATGCCTGA-TCTC-TAACAAGTTAT-TTCCCTTACTTGAAACT-CTTTTAAGT-TAAAAA-C-CAT---TTTAGTGTA-G-GTAAA-C-AAC-TGTG-----------ACATGCAGAC---AGACACTCTTAAGTACTTTGTTTCTT-ATT-ATTCAGTGGACGATTTGTTTTCTTAATT-CATGGTGA-AAAGGATGAATTGTAAATTAAAAAGTC---A-GTGA-A--TTTGCATAA-TAAGCTTGCCTTATGATATTGATAAGGTTTT-GGGTGAAATTAGA--CTT-G-TTGCTGGTTTGATAATAA---------------G--ATCTATATTAT----TTTTATTTGCC-TTGAATAAGTTTTTTG-CT-AA-GAC--TTTTT-GCAGTTATA---GAAGAAAT-GTAACTAG---C-TTGAT----ATAA---AACAGCTTTGCCG-ACCACAACAC-ATT-GAA-CTTC-AGGCAA-GTTT--GTCCACAATATTATTTTTA-TAG---TTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTCGATCATT-ATATGTACAATATTTT---TCAATTCAATTAGCTA-ATATG-TGAAAAAG--ACTA-CATGATTGTAATGA-CGGAGTGAACAAAACCAGTG--CTTGAGGTATGAC---GCTATAA-ATGA--TATGACTTGA--AA--TGGCGATTGACGGTACA-GGTGACGA-CAT-GA-TGGA--TGTA-CTTTA-GC--TATATT-TA--GGGATCTTAGAGAAAGAAAACTTGAATGAAAGAAACAAGGATAAT-AAATAAA----TAAAT-AATTAATAG---GAGTATT-ACATATTCTTTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|30 : AACTGG-TACCCCCATT-GAT-TGG--TGCT-A-CACG-CAAACTT---G-A----GAGAAG--CGAGA---GCC-A-ACAG---GA-TACCAGTTT-A
gi|31 : tAACTGG-CACCCT-GTT-GAT-TGT--TGCT-A-CACA-CAAA------C-G---AGATAGAAGTGAGA---GCC-A-ACAG---GG-TACCAGTTT-
gi|32 : CAGTTATG---AGAGAAAT-GTAACTAG---C-TTGATTTTTAT-------TAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-
gi|34 : AACTGA-TACCCC-GTT-GAT-TTG--TGCT------A-C-----------A---CGAGAAG--CGAG----GTC-A-ACAGA--GG-TACCAGTTT-A
gi|35 : -TAAAGTGG-TACCCC-GTT-G---TTGGCTGCT-A-CA-C-CAA
gi|36 : ctccgtgaagcgACTGG-TACCCC-ACT-GAT-TGG--TGCT---------------------------------CGAGA---GGC-A-ACAG---GG-TACCAGT
gi|37 : AGAAA-CACAG---TTTAATGTA-A-GTAAA-C-AACTTGTG-----------ACATGCAG-CAG
gi|38 : ---AGAGAAG--TGAGA---GCC-A-ACAGCCTGG-TACCAGTTT-AT
gi|4 : actcgAACAA--TAT-T-CCCTTACT-GAAAC--CTTTTAA-T-TAGAAA-CACAT---TC--ATGTA-GAGTAAA-C-AACTTGTGACCCAAGTGTGACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTG-TTTCTTAATT-CATGGTGA-AAAAGATGAATTGT-AATTAAAA--TC---A-GTGA-AT-TTTGCATAA-TGAGC-TGCCTT----TATTAACAACTTTTT-GGCTGAAATTAGA--CTT-G-TTGCTGGTTTGATAACAAGAAAATTTCA-G-T-G--AACTACATTAT----TTTAAT-TGCA-ATGAATAAG-TTTTTG-CA-AA-GAC---TTTT-GCAGTTA--------------GTAACTAG---C-TTGAT----AT-AATTAACAGC-TTGCCG-ACCACAACATAATT-GAA-CTTC-AGGCAAGGTTT--GCCCACAATA-------TATTAG---TATTTGTCTTAT-GC-AT-AG-GGCATT-AGGGGCTTACGACT----TCATTGATATGTACAA-ATATT---TCAATTCAATTAGATA-A-ATG-TGAAAAAG--ACTA-CATGATTCTAATGA-CGGAGT-AACAAAACCAGTT--C-TTATCTATGAC---GTCATAA-TTGA--TATAAATTTCAAAA--TGACGTTTG-ATGTACA-TGT---GA-CAT-CA-TGGA--TGTCTCTTTG-GC--C-TATTATA---GGATCTTAGAGAAAGAAAACTGGAGTGAAAGAAACAAGGATAAT-AAATAAA----TCAAT-GATTAATAC---GAGTAAT-ACA-GTTC-TTT-AAA---CTTTAGACA-TTCAT-ACT-TT-TTCTG-CGA-TCTGA-G-GGCAGTAAag
gi|41 : tAACTGG-TACCCC-ATT-GAT-TGG--TGCT-ACAC-A-CAAA------ctgaggcctagcggctag
gi|42 : tGAGA--CACGA---GTC-A-ACAG---GG-TACCAGTTT-ATACc
gi|5 : TAT-TTTTGTT-TG--AAAAAA--TGAAGCACAC-ATACGTGACCTA-CAACTTCTCAAAA---TTA-TAG--AATTG--GCTCA--AGAATATTTC-TTTTATGAG-AGG-CTA-TA-GAAAATACC-AAA-AAA-TG--TTCA--CTTT--AAGGCTGA-TTT-T--AAACTGG-TCCCCC-ATT-GAT-TTG--TGCT-A-AA-A---AT------A-A---AGAGAGA--CAAGA---GTC-A-ACAG---GG-TACCAGTTT-ATGC-TAA-TATC-AAACAACTTAT-TTCCCTTACT-GGAACT-CTTTTAAGT-TAGAAA-TATAT---TTTAGTGTA-G-GAAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTCTTTCTTTCTTAATTCAGT--AC--TTTG-TTTCTTAATC-CATGGTGA-AAAGGATGAATTGTGAA-TAAAAAGTC---A-GTGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTT-GGCTGAAATTAAA--CTT-C-TTGCTGATTTGATAACAAGAAAATTTCA-G-TAG--ATCTACATTAT----TTTTATTTGCA-ATGAATAAG-----TG--------------TTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TGGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-TTTT--GCCCACAGTG-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGG
gi|6 : ataattacaccctttttctccttatatttttaaaaaaaatgtctgaggaatgTCTTTAC-TTTTGTT-GG--AAAAA----GAAGCACAT-ATACTTGACCTAACAACTTCTCAAAAAGATTAATAACAAAT-GCGACTCA--AGAATATTTCCTTTTACAAG-AGG-C-AATG-AGAAATACA-AAA-AAAATAAAATCA--CTTT--GAGGATGA-TTT-T--AAACTGG-TCCCCA-TTT-GAT-TTG--TGCT-A-AA-AACAAA------G-AGAGAGAGAGA--CAAAA---GTC-A-ACAA---G--TACCAGTTTAATG-CTGATTCTCAAAACAA-TTAT-TTCCCTTAC-TGAAACT-CTTTTAAGT-TAGAAA-CACAT---TTTAGTGTA-G-GCAAA-C-AACTTGTG-----------ACATGCAG-CATAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTT-TTAATT-CAAGGTGA-AAAAGATGAATTGTAAATT-AAAAGTC---A-GTGA-A--TTTGCACAA-TGAGCTTGCTTTATGATATTGACAAGCTTTT-GGCTGAAATTGGA--CTT-G-TTGCTGGTTTGATAACAAGAAAATTTCT-G-TAG--ATCTACATTAT----TTTTATGTGCA-ATGAATAAATTTTTTG-AT-AA-GAC--TTTTT-GCAGTTATGAAAAAAAAAAT-GTAACTAG---C-TTGAT----AT-A---AACAACTTTGCCG-A
gi|7 : aacattttagggctgattttcagtaaaaattgcaaataattacccccttttctgcttgtattttaaaagaatgtggttgaggaattgTATGATCG-GTCA-AA-TTGAATTATGACTTTC--AAAATGACGTTTGAATGTACA-T-TGACGAACATCAAATGGA--TGTA-CTTTAAGC--TATACTGTATAGGGACCTTAAGAAAAGAAAACTGGAA-GAAAGAAACAAGGA-AATAAAATCAA----T-AA---ATTAATAC---GAGTATTAACATATTC-CTTATAAAACCTTTAGACATTTCATAACTGTTA-TCTG-CGATTCTGAGG-GGCAGTAt
gi|8 : CTTTAC-TTTTGTT-TG--AAAAAA---AAAGCACAT-ATACTTGACCTA-CATCTTCTCAAAA---TTA-AAG--AATGG--GCTCA--ATAATATTTC-TTTAATAAG-AGGCC-A-TA-G-AAATAC-------AAATAAATTCA--CTTT--GAGGCTGA-TTT-TAGAAACTGG-TTCCCC-ATT-GAT-TTG--TGCT----A-A-CAAA-------------------------A---GTC-A-ACAG---GG-TACCAGTTT-ATG-TTGA-TCTC-AAACAAGTTAT-GTCCCCTAC-TGAAACT-CTTTTAAGT-TAGAAA-CACAT---ctgaggccttatgcggctagtccatttgaactagcctcccctccgggtcccaccccaatatacccagaaaatggtctattcataaagttattggcaaagaatcagtcaaaatttgatatgcacgtatcgaactgaacgtcaaaatgtgaagaaattgcaaaaacaaaaatccaacaaccaaccaactcgcttaaatacctatactagtatgacggatggcctgtacacacacccccctcttttaagtaagtgttaataagatacattttttgcatagatacatttatattcgattgtgtgcttatatcatgttgctaatggactgcgctataacaagtgtttttttatgcgatttaaagtgagaacaacacagataaatcagtggaaataattttgacatccttgtagtcttttagtctcctagttatgtgatttcgacacacctaattagcat
gi|9 : cactgataatcagtaaggaccaaacttttctggaaatgggatggttgatattctcctacaagtaattttttcttcaagtatatctatttaggattaaaataagtgttgtatatgaaaattatatacctagctgttgtcatggaaacaccagtcaaataaagcatatcatgaaaatttaggccccacaggaaaatagcccactggaaacatttctaaatgcactagatgtacacttcactttttaaaaaaacgttcggatgtatggggaatttttttaaaacatagatgtttaagattgtatcaaaaagaacatttaagggctaattttcagtaaaaatgacaaataattacccccctttctgcttgtattgtaaaaaaaagtcttgatgaattgTCTTT-C-GTTTGTT-TG--AAAAAAAATGAAGCACATTATACTTGGACCA-CAACTTC--AAAA---TTA-TAG--AAT-G--GCTCA--AGAA-ATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAACAAAAAAAAATCA--CTTT--GAGGCTGA--TT-T-TAAACTGG-CCCTCC-ATT-GA--TTG--TTCT-ATAA-A-CAAA------G-----AGAGAAA--CAAGA---G-C-A-ACA----GG-TACCAGTTT-AT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACACTGATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTTGATATTCTCCTACAAATATTTTTGTCTTCAAGTATGCCTATAGACTCTATTCACGCGTCGGCCATAAAAATACGAAAACGAGGCTGCCTATTTAGTATTAAAATAAGTTGTATATACAAATTATATTCCTAGCTGTTGTCATGGAAACACCAGTCAAATAAAGCAAAACATGAAAATATAGGCCCCACAGGAAAATAGCCCACTGGAAACATTTCTAAATGCACTAGACATACACTTCACTATTTAAAAAAAAGTTTGGATGTATCGGGATTTTTTTTAAAAACTTAGATGTTTATTAAAGATTGTATAAAAAAGAACATTT
Unaligned ( gi|13 ): TTGTTGGAAATTGGGATGTTTGATATTCTCTTCAAAGAATTTTTCTTCAAGTATGCTATTTAGTATTAAAAATAAGTTGTCATATAAAAATTATATTCCTCAGCTGTTTGTCATGGAAACACCAGTCAAAGTAAAGCAAAACATGAAAAATATAGGCCCCACAGGAAAATGTCTGCACAGGAGACAATTTCTAATCAAGACATAACACTTCATTTTTAAAAATAAAAGTTGGATGTATGGGGATTTTTTTTAAAACTTAGATGTTTTAAGATGTATCAAAAAGAACAGTTTTTAAGGGCTGATTTCAGTAAAAATGCAAATACCGTACACCCCTTTTTCTTGCTTGTATTAAAAAAAGATTCTGAG
Unaligned ( gi|19 ): ACACTTCACTTTTTAAAAAAAAGTTCGGATATATGGGGATTGTTTTTTAAACCTAGATGTTTAAGATTGTATAAAAAAAGAACATTTTAGGGATGATTTTCAGTAAAAATGGCAAATAA
Unaligned ( gi|21 ): ACACTGATTATCTTTAAGGACCAAAATTTGCTGGAAACGGGATGTTTGATATTCTCCTACAAGTAATTTTTTTTCTTCAAGTATGCCTATTTAGTATTAAAATAAGTCGTATATAAA
Unaligned ( gi|22 ): TATTAGAATAAGTTGTATATAAAAATTATATTCATAGATGTCATGGAAACACCAATCAAATAAAGCAAACTTTGAAAATGTAGGCCCCACAGGAAAAGAGCCTACTG
Unaligned ( gi|23 ): AACACTGCTATATCTGTAAGCCAAATTGCTGGAAATTGGGAGTTTGATATTCTCCTTCAAGTAATTTTTTCTTCAAGTTAGCCTATTTAGTATTAAAATAAGTTGT
Unaligned ( gi|24 ): AACACTGATTATAAGGACCAAAATTTGCTGGAATTGGAATGTTTGATATTCTTCTACAAGTATTTTTTTCGCAAGTATGCCCATTTAGTAATTTAAAATAAGT
Unaligned ( gi|25 ): ATTTCTAAAAGCACTAGACATACACTTCACTTTTAAAAACATTCGGATGTATGGAGATTTTTTAAAAAAAAACTTAGATGTTTAAGATTGTATC
Unaligned ( gi|26 ): TGGCTCGAGAAATAGTGTTTTCACTACACTTGAAAATACAGATAGGATAAAACCGGTGATTCCGGAATATGGGCAATACTAACCTATA
Unaligned ( gi|33 ): GGCCTTAATAAAATTTAGTGAAATCGTTTATATAAATACTTGCAAATTCTTTTATCAGTCTT
Unaligned ( gi|39 ): TATATGTTGATGTGCTGTATGATATTTTATGTTTGCAAATAT
Unaligned ( gi|40 ): TGCGATTTAGAGAGCAGTAACTGAGGCCTAGCGGCTA
Alignments
lowQualScore : 1 1111 1 222 11 1 1 111 4444444444444444444444444 11 1 22 22222222222 1 1 111 11 1111 1111 111 111 1111 1 22222222222 1111 1 3333 111 1 111 2 11 11 222222 1 333333 111 111 1 1 1 111 1 1 1 1 1
lowQualScore : 1 5 77 4444 5 1 1 000 77 33 1 77 77 5 5 5 5 0 5 5 55 5 555 66 66 88 4 77 2 555 77 4 2 55 1111111111111111111111111 33 444 4 2 2 666 2 3 88 5 1 5 1 666 44 5 5 5 5 3 888 5 5 5 5 5 77777777777 5 0 2 1 3 1 99 99 7 7 6 1 6 0 5 2 77 000 77 5 33 5 3 5 1 2 1 1 6 77 5 5 7777 2222 6 5 8 6666 5 666 5 777 4 777 4 4444 777 4 4 5 5 5 5 3 99 1 66666666666 6 3333 1 5 6 6 6 6 6 6 3333 6 5 888 3 6 3 6 99 6 0 5 0 77 555 5 77 77 77 8 8 0 8 11 8 8 11 0 222222 3 3 3 3 0 666666 333 777 0 3 0 0 777 3 0 0 66 0 3 0 0
lowQualScore : . . .. .... . . . ... .. .. . .. .. . . . . . . . .. . ... .. .. .. . .. . ... .. . . .. ......................... .. ... . . . ... . . .. . . . . ... .. . . . . . ... . . . . . ........... . . . . . . .. .. . . . . . . . . .. ... .. . .. . . . . . . . . .. . . .... .... . . . .... . ... . ... . ... . .... ... . . . . . . . .. . ........... . .... . . . . . . . . .... . . ... . . . . .. . . . . .. ... . .. .. .. . . . . .. . . .. . ...... . . . . . ...... ... ... . . . . ... . . . .. . . . .
lowQualScore : 4 7 99 3333 7 4 7 000 44 66 4 99 99 0 7 7 7 0 0 0 11 0 999 99 99 22 4 99 2 777 55 4 2 33 5555555555555555555555555 11 111 7 4 4 555 4 1 44 7 0 0 9 000 99 0 6 0 0 2 888 0 7 7 7 7 11111111111 7 7 5 0 2 7 22 22 3 3 7 0 7 6 0 0 99 000 99 7 66 7 0 0 0 5 0 0 7 99 7 7 7777 1111 6 7 7 1111 7 333 7 555 4 000 0 0000 000 0 4 7 7 7 7 3 22 0 88888888888 7 3333 3 7 7 7 7 7 7 7 8888 7 7 333 2 7 2 7 22 7 8 0 6 99 666 0 99 99 99 0 0 0 0 00 0 0 00 8 222222 2 2 2 2 0 000000 555 555 0 2 0 0 555 2 0 0 55 0 2 0 0
consensus : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA-AAAATAAA-TCA--CTTT--GAGGCTGA-TTT-T-TAAAC-TGG-TACCCC-GTT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCNAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCANGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--C---A--GTGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTT-GGCTGAAATTAGA--CTTG-TTG-CTGGTTTGATAACAAGAAAATTTCNGTAGATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----ATA---AA-CAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA---T-------A-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
Reference ( family-664 ) : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA-AAAATAAATTCA--CTTT--GAGGCTGA-TTT-T-TAAAC-TGG-TACCCC-GTT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCNAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCANGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--C---A--GTGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTT-GGCTGAAATTAGA--CTTG-TTG-CTGGTTTGATAACAAGAAAATTTCAGTAGATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----ATA---AA-CAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA---T-------A-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|1 : TACGTTTTGTT-TG--AAAAA---TGAAGCACAT-ATG------------ATTTCTCAAA----TTA--AG--AAT-G--GGCTA--GAAATATTTC-TTTTATAAGTAGG-T-A-TG-GAAAATATA-AAA-AAGATA--------CTTT--GAGGTTGAATTT-T-GAAAC-GGG-T-CCCC---T-GATATTG--TGCTTA-AA-A-CAAA------G-A----GAGAGA---AAG---AGTC-A-AACAG---GGATTCCAGTTTA-TGGCTGAT-CTCTAA-CAAGTTAT-T-CCCTTACT-GAAAC-TTTTTC---TGTAGAAC-C-CA---TGTTTAG-GTATG-GTAAA-CCAACTTGTG-----------ACATGCAG----AAGACACTCTCTAATA-TTTGTTTTTAAATTAACTC-GT--A---TTTGTTT-CTTAA-TTCAAGGTGA-AAAGGATGAATTGT-AATT--AAAGT--CAGAA--GTGG-AATTTTGCATAAGTGAA-TTG-CTTATGATATTGG-AAGCTTTTGGGCTG-AATTATATTCTTGTTTG-CTGGTTTGATAACAAGAACATTCAGGTAGAT-TACATTAT----TTTTATTTGCA-ATGAATAGGTTTTTTG-CT-AAGGACAGTTTTTGGCAGTT-TG---AAAGAAGT-GTAACTAG---C-TTGAT----ATA---AA-CAG-TTTGCCG-ATCACTAAAT-ATT-GAATCTTC-AGGCAG-TTTT--G-CCACAATA---T-------A-CA-----------CGTAT-AG-AT-AAGGGCATTAAGGGGCTTAC-ACT----TCATT-GTATGT-TAATATTTT---TT-TTTCATTGAGATA-GGAT-------AAT--ACTA--ATGATTCTAATAATCGGAGT-AACAAAACCAGTTGCTTTTAGCTATGA----GTCATAA-TTGA--TATGAC-TTC--AA--T
gi|10 : actgattaatctgtaacgaagccacatttgctggaaatgggatgtttgatatctccttaaaggtagatttttttttcaagttgcgatttagtattaagaataagagtgtaatataataaatttaatcctagctgttgtaatggaaactacagtcaaacaaagcaaaacataaaatagcccccaaggaaaatagcaaatggaaacattatgctagaagaatgcactaatagcatacactgactttttaaaaaaaaaagttcggatggtatgggaattttttttataaaagttagatgttttacagattgtagtcaaaaaagaaacattttagagtcattttcagtgaagataagcaaaataattacaccctttttctgcctgtactttaaaaaaaatgtcggaggaatttgGAAACAAGGATA-T-AAATAAAATCAC-AATTGATTAATACCTTGAGTATT-ACATGTTC-TTA-TAA---CTTTATACATTTCAT-ACT-TTATTCTGTCGATTTTGA-GAGGCAGGAA
gi|11 : TGTAAATTAAAA-GT--C---A--GTGA-A--TTTGCATTA-TTAGCTTGctgagccttagggcggtattccagtttttgaactacgccatacccatgggtcccagcccataatacccatgggatggtctatgtcaataaaattatttggcaaaaaatctatatgaaaaaattttgatatgcacgtatcgaactgaaacgtcaaattgaaaatgctattataaacaaaatcacaacaaaccaactcgctaaatacctggctatactagtatacggatggctgtaacaacccccccctcctcttttaagtaagtggttaaaataagcatataatttttcatagtacagtatatgtgattttagctattactcattcctaatgatggcgcatcgaataaaagtgtggatacacacagaataaatcattgaaaatatttttacatcttgtgtttagtcccttagaaatgtgatttgacacctaattaac
gi|11 : ATTAG---CTTG-TTG-CTGGTTTCATAACAAGAAAATATCTCTACATCTACATTAT----TTTTATGTGCA-ATGAGTACGATTTT-G-AT-AA-GAC--TTTCT-GCAGTTATG---AAAGAAAT-ATAACTAG---C-TTGAT----ATA---AA-CAGCTTTGCCG-AACACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA---C-------A-TAA--TTTTT-GTCCTAT-GC-AT-AG-GATATT-AGGGGCTTAC-ACTTC----ATT-ATATGTGCAATATTTT---TCAATTAATTTACATA-ATATG-TGAAAAAG--ACCA-CACGATTCTAAAGA-CGGAGTAAAGAAAACCAGTT--CTCTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAttgctggtttcataacaagaaaatatctctacatctacattatttttatgtgcaatgagtacgattttgataagactttctgcagttatgaaagaaatataactagcttgatataaacagctttgccgaacacaacatattgaacttcaggcaagtttgcccacaatacataatttttgtcctatgcataggatattaggggcttacacttcattatatgtgcaatatttttcaattaatttacataatatgtgaaaaagaccacacgattctaaagacggagtaaagaaaaccagttctctagctatgacgtcataattgatatgactttcaatgacgtttga
gi|14 : tgtaaattaaaagtcagtgaatttgcattTAACTAGAGTCGTTGAT----A-----AA-CCACTTTGCCGGACCACAACAT-ATTGGAA-CTTCAAGGCAAGGTTTGAGCCCAAGATACGTT-------A-TAGTTTTTTTTGTC-TATAGCGATAAA-GGC----AGTGGCTTAC-ACT----TCATT-TTATGTCGAATATGTTATGTCAATCTAAT--GATAGATATGTTGATACAGTTGTCATCATGTTGCTAATGA-CTGAGT
gi|15 : AAT-GTAACTAG---C-TTGAT----ATA---AA-CAACTTTGCCG-A
gi|15 : CGATTCTAAAGA-CGGGGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CAT-CA-TGGA--TGTA-CTTTA-GC--TATATT-CA--GAGATCTTAGAGAAAGAAAACTGGAATGAAAGAttctaaagacggggtaaacaaaaccagttctttagctatgacgtcataattgatatgactttcaatgacgtttgaatgtacatgtgacgacatcatggatgtactttagctatattcagagatcttagagaaagaaaactggaatgaaaga
gi|16 : aatgtaactagcttgatataaacaactttgcCGATTCTAAAGA-CGGA---AACAAA-CCA--T--CTTTACCTATTACACCGTCATAACTTGA--TATGACTTTC--AA--TAACGTC--AAT-TACACTGTGACGA-CATCCA-TGCAACTAAA-CTTTA-GCCTCATAATGCA---GAATCTTAGA-AAAGAAA
gi|17 : gataaataaacaaacccgtccTAC-ATTTCA-TC-TT-ATATGTACAATATTTTT--TCAATTCAATTAGATA-ATATG-CGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTG--TTTTAGCTATGAC---GTCATAA-T
gi|18 : TT-T-TAAAC-TTG--ACCCCTATT-GAT-TTG--TGCTAA-AA-A-CAAT------G-----AGAGAGA--CAAG---AATC-A-T-C-G---GG-TACCAGTTTA-TG-CTGAT-CTATAA-CAAGTTAT-TTCCCTTAC-TGAAAC-TCTTTTAAGT-agggcgagaaagtttcgaagttac
gi|2 : aaTCTTTACCTTTTGTTATGGTAAAAAA--TGAA-CACAT-A-ACTTGACCTAACAACTTCTCAAAAAAATTA-TACC-AAT-G--ACTCACAAGAA-ATATC-TTATACAAG-ATG-C-A-AAAGAAAATACA-AAA-AAAATAAA-TCAGCCTTTTCGA-GCTGA--TT-T-TAAACTTTC-TCCCCC-ATG-TAA-TTG--TGCTAA-AA-A-CAAAACTAATG-A---GAAGAAA--CAAGACAAGTC-ACA-AAA---AC-TACCAGTTTA-TG-CTGAT-CCAAAA-CAA-TTATGCCCCCTTAC-TGAAACTTCTTTTAA---TAGAAATCACATAGT-TCTAGT-TA-G-GCAAACC-AACTT--------------ACATGCAG-CATAA-ACACTCC---ATAC--TG---CTTAATTAA-TCAGT--AC--TTTG-TTTCTTAATTTCAAGGTGACAAAAAATGAATT---AATT--AAAGTCCC---AACATGATA--TTTGCACAA-T-AGC-TGC--TAT-ATATT-ACATACTTTT-GGCTGAAATTTGA--CT---TTGTCTCCTTTGATAACAA-AAAATTTCTG-AAATCTACATTATTATATTTTATGTGCACATAAATAAATTATCTGAATAAA-GAC----TTT-GCAGTTATGACAAAAAAAATAATGACTAG---C-TTGATAA--ATA---AA-Caattatcagttaattttattt
gi|20 : ccactgatatatcttaaggacccaaaaaaattttgctggaaacggtagtttgatactcactacatcagttacattttgttttcttcaagtaggcctaactagtattaaaatacatcctatataaaaataacttctcctagctcgttgtcagctggaaacaccagtcaaataaagcaaaatacataaagatagacccgacagaaaatagcccactgaacacatttcttaacaaccataaacaatcatacaccttcacttctttaaaaaaaagtcacattatgggaattttttttctaaatcattaacaccatatggttaacttcgcctttttgaatgtttaacagataaaaagaacaattttagcgatttcacagtaaaaagtccgcccaacaataaacccccttcttgctatttaacaagaattgtgaaaatt-A-TA-GAAAATACA-AAA-AAAGT----TCA--CTTT--GAGGCTGA-TTT-T-T-AAC-TGG-TCCCCC-ATT-GAT-TTG--TGCTAA-AA-A-CAAA------G-----AGAGAGA--
gi|27 : gacattttttttatttctggtataactgtgttaaa-TAAAC-TGG-TACCCC-GTT-GAT-TTGG-TACT-A-CACA-CAAACTC---G-A---GAAAAG---CGAG---AGCC-A-A-CAG---GG-TATCAGTTTA-t
gi|28 : cAAC-TGGATACCTC-GTTTGAT-TGG--TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAG---AGTCGA-A-CAG---GT-TACCAGTTTa
gi|29 : AAC-TGGATACCTC-GTTTGAT-TGG--TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAG---AGTCGA-A-CAG---GT-TACCAGTTT
gi|3 : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGGACAT-ATACTTGACCTA-CAACTTCACAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-CCA-TA-GAAAATACACAAA-AAAAAAAATTCA--CTTT--GAG-TTGA-TTTAT-TAAAC-TGG---CCCC-ATT-GAT-TTG--TGTT-A-AA-A-CAAA------G-A---AGAGAGA--CAAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCTAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAAAAA-C-CA---T-TTTAGTGTA-G-GTAAA-C-AACT-GTG-----------ACATGCAGACAGA---CACTCTTAAGTACTTTGTTTCTTA-TTA-TTCAGTGGACGATTTGTTTTCTTAA-TTCATGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--C---A--GTGA-A--TTTGCATAA-TAAGCTTGCCTTATGATATTGATAAGGTTTT-GGGTGAAATTAGA--CTTG-TTG-CTGGTTTGATAATAAGA-------------TCTATATTAT----TTTTATTTGCC-TTGAATAAGTTTTTTG-CT-AA-GAC--TTTTT-GCAGTTATA---GAAGAAAT-GTAACTAG---C-TTGAT----ATA---AAACAGCTTTGCCG-ACCACAACAC-ATT-GAA-CTTC-AGGCAA-GTTT--GTCCACAATA---TTATTTTTA-TAG--TTTTT-GTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTCGATCATT-ATATGTACAATATTTT---TCAATTCAATTAGCTA-ATATG-TGAAAAAG--ACTA-CATGATTGTAATGA-CGGAGTGAACAAAACCAGTG--CTTGAGGTATGAC---GCTATAA-ATGA--TATGACTTGA--AA--TGGCGATTGACGGTACA-GGTGACGA-CAT-GA-TGGA--TGTA-CTTTA-GC--TATATT-TA--GGGATCTTAGAGAAAGAAAACTTGAATGAAAGAAACAAGGATAAT-AAATAAA----TAAAT-AATTAATAG---GAGTATT-ACATATTCTTTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|30 : AAC-TGG-TACCCCCATT-GAT-TGG--TGCT-A-CACG-CAAACTT---G-A----GAGAAG--CGAG---AGCC-A-A-CAG---GA-TACCAGTTTA-
gi|31 : tAAC-TGG-CACCCT-GTT-GAT-TGT--TGCT-A-CACA-CAAA------C-G---AGATAGAAGTGAG---AGCC-A-A-CAG---GG-TACCAGTTT
gi|32 : CAGTTATG---AGAGAAAT-GTAACTAG---C-TTGATTTTTAT-------TAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-
gi|34 : AAC-TGA-TACCCC-GTT-GAT-TTG--TGCT------A-C-----------A---CGAGAAG--CGAG----GTC-A-A-CAGA--GG-TACCAGTTTA-
gi|35 : -TAAAG-TGG-TACCCC-GTT-G---TTGGCTGCT-A-CA-C-CAA
gi|36 : ctccgtgaagcgAC-TGG-TACCCC-ACT-GAT-TGG--TGCT---------------------------------CGAG---AGGC-A-A-CAG---GG-TACCAGT
gi|37 : AGAAA-CACA---G-TTTAATGTA-A-GTAAA-C-AACTTGTG-----------ACATGCAG-CAG
gi|38 : ---AGAGAAG--TGAG---AGCC-A-A-CAGCCTGG-TACCAGTTTA-T
gi|4 : actcgAA-CAA--TAT-T-CCCTTACT-GAAAC--CTTTTAA-T-TAGAAA-CACA---T-TC--ATGTA-GAGTAAA-C-AACTTGTGACCCAAGTGTGACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTG-TTTCTTAA-TTCATGGTGA-AAAAGATGAATTGT-AATTAAAA--T--C---A--GTGA-AT-TTTGCATAA-TGAGC-TGCCTT----TATTAACAACTTTTT-GGCTGAAATTAGA--CTTG-TTG-CTGGTTTGATAACAAGAAAATTTCAGT-GAACTACATTAT----TTTAAT-TGCA-ATGAATAAG-TTTTTG-CA-AA-GAC---TTTT-GCAGTTA--------------GTAACTAG---C-TTGAT----ATAATTAA-CAGC-TTGCCG-ACCACAACATAATT-GAA-CTTC-AGGCAAGGTTT--GCCCACAATA---T-------ATTAG---TATTTGTCTTAT-GC-AT-AG-GGCATT-AGGGGCTTACGACT----TCATTGATATGTACAA-ATATT---TCAATTCAATTAGATA-A-ATG-TGAAAAAG--ACTA-CATGATTCTAATGA-CGGAGT-AACAAAACCAGTT--C-TTATCTATGAC---GTCATAA-TTGA--TATAAATTTCAAAA--TGACGTTTG-ATGTACA-TGT---GA-CAT-CA-TGGA--TGTCTCTTTG-GC--C-TATTATA---GGATCTTAGAGAAAGAAAACTGGAGTGAAAGAAACAAGGATAAT-AAATAAA----TCAAT-GATTAATAC---GAGTAAT-ACA-GTTC-TTT-AAA---CTTTAGACA-TTCAT-ACT-TT-TTCTG-CGA-TCTGA-G-GGCAGTAAag
gi|41 : tAAC-TGG-TACCCC-ATT-GAT-TGG--TGCT-ACAC-A-CAAA------ctgaggcctagcggctag
gi|42 : tGAGA--CACG---AGTC-A-A-CAG---GG-TACCAGTTTA-TACc
gi|5 : TAT-TTTTGTT-TG--AAAAAA--TGAAGCACAC-ATACGTGACCTA-CAACTTCTCAAAA---TTA-TAG--AATTG--GCTCA--AGAATATTTC-TTTTATGAG-AGG-CTA-TA-GAAAATACC-AAA-AAA-TG--TTCA--CTTT--AAGGCTGA-TTT-T--AAAC-TGG-TCCCCC-ATT-GAT-TTG--TGCT-A-AA-A---AT------A-A---AGAGAGA--CAAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGC-TAAT-ATCAAA-CAACTTAT-TTCCCTTACT-GGAAC-TCTTTTAAGT-TAGAAA-TATA---T-TTTAGTGTA-G-GAAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTCTTTCTTTCTTAATTCAGT--AC--TTTGTTT-CTTAA-TCCATGGTGA-AAAGGATGAATTGTGAAT-AAAAAGT--C---A--GTGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTT-GGCTGAAATTAAA--CTTC-TTG-CTGATTTGATAACAAGAAAATTTCAGTAGATCTACATTAT----TTTTATTTGCA-ATGAATAAG-----TG--------------TTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TGGAT----ATA---AA-CAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-TTTT--GCCCACAGTG---T-------A-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGG
gi|6 : ataattacaccctttttctccttatatttttaaaaaaaatgtctgaggaatgTCTTTAC-TTTTGTT-GG--AAAAA----GAAGCACAT-ATACTTGACCTAACAACTTCTCAAAAAGATTAATAACAAAT-GCGACTCA--AGAATATTTCCTTTTACAAG-AGG-C-AATG-AGAAATACA-AAA-AAAATAAAATCA--CTTT--GAGGATGA-TTT-T--AAAC-TGG-TCCCCA-TTT-GAT-TTG--TGCT-A-AA-AACAAA------G-AGAGAGAGAGA--CAAA---AGTC-A-A-CAA---G--TACCAGTTTAATGC-TGATTCTCAAAACAA-TTAT-TTCCCTTACT-GAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GCAAA-C-AACTTGTG-----------ACATGCAG-CATAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTT-TTAA-TTCAAGGTGA-AAAAGATGAATTGTAAATTAAAA-GT--C---A--GTGA-A--TTTGCACAA-TGAGCTTGCTTTATGATATTGACAAGCTTTT-GGCTGAAATTGGA--CTTG-TTG-CTGGTTTGATAACAAGAAAATTTCTGTAGATCTACATTAT----TTTTATGTGCA-ATGAATAAATTTTTTG-AT-AA-GAC--TTTTT-GCAGTTATGAAAAAAAAAAT-GTAACTAG---C-TTGAT----ATA---AA-CAACTTTGCCG-A
gi|7 : aacattttagggctgattttcagtaaaaattgcaaataattacccccttttctgcttgtattttaaaagaatgtggttgaggaattgTATGATCG-GTCA-AA-TTGAATTATGACTTTC--AAAATGACGTTTGAATGTACA-T-TGACGAACATCAAATGGA--TGTA-CTTTAAGC--TATACTGTATAGGGACCTTAAGAAAAGAAAACTGGAA-GAAAGAAACAAGGA-AATAAAATCAA----T-AA---ATTAATAC---GAGTATTAACATATTC-CTTATAAAACCTTTAGACATTTCATAACTGTTA-TCTG-CGATTCTGAGG-GGCAGTAt
gi|8 : CTTTAC-TTTTGTT-TG--AAAAAA---AAAGCACAT-ATACTTGACCTA-CATCTTCTCAAAA---TTA-AAG--AATGG--GCTCA--ATAATATTTC-TTTAATAAG-AGGCC-A-TA-G-AAATAC-------AAATAAATTCA--CTTT--GAGGCTGA-TTT-TAGAAAC-TGG-TTCCCC-ATT-GAT-TTG--TGCT----A-A-CAAA----------------------------AGTC-A-A-CAG---GG-TACCAGTTTA-TG-TTGAT-CTCAAA-CAAGTTAT-GTCCCCTAC-TGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-ctgaggccttatgcggctagtccatttgaactagcctcccctccgggtcccaccccaatatacccagaaaatggtctattcataaagttattggcaaagaatcagtcaaaatttgatatgcacgtatcgaactgaacgtcaaaatgtgaagaaattgcaaaaacaaaaatccaacaaccaaccaactcgcttaaatacctatactagtatgacggatggcctgtacacacacccccctcttttaagtaagtgttaataagatacattttttgcatagatacatttatattcgattgtgtgcttatatcatgttgctaatggactgcgctataacaagtgtttttttatgcgatttaaagtgagaacaacacagataaatcagtggaaataattttgacatccttgtagtcttttagtctcctagttatgtgatttcgacacacctaattagcat
gi|9 : cactgataatcagtaaggaccaaacttttctggaaatgggatggttgatattctcctacaagtaattttttcttcaagtatatctatttaggattaaaataagtgttgtatatgaaaattatatacctagctgttgtcatggaaacaccagtcaaataaagcatatcatgaaaatttaggccccacaggaaaatagcccactggaaacatttctaaatgcactagatgtacacttcactttttaaaaaaacgttcggatgtatggggaatttttttaaaacatagatgtttaagattgtatcaaaaagaacatttaagggctaattttcagtaaaaatgacaaataattacccccctttctgcttgtattgtaaaaaaaagtcttgatgaattgTCTTT-C-GTTTGTT-TG--AAAAAAAATGAAGCACATTATACTTGGACCA-CAACTTC--AAAA---TTA-TAG--AAT-G--GCTCA--AGAA-ATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAACAAAAAAAAATCA--CTTT--GAGGCTGA--TT-T-TAAAC-TGG-CCCTCC-ATT-GA--TTG--TTCT-ATAA-A-CAAA------G-----AGAGAAA--CAAG---AG-C-A-A-CA----GG-TACCAGTTTA-T
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACACTGATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTTGATATTCTCCTACAAATATTTTTGTCTTCAAGTATGCCTATAGACTCTATTCACGCGTCGGCCATAAAAATACGAAAACGAGGCTGCCTATTTAGTATTAAAATAAGTTGTATATACAAATTATATTCCTAGCTGTTGTCATGGAAACACCAGTCAAATAAAGCAAAACATGAAAATATAGGCCCCACAGGAAAATAGCCCACTGGAAACATTTCTAAATGCACTAGACATACACTTCACTATTTAAAAAAAAGTTTGGATGTATCGGGATTTTTTTTAAAAACTTAGATGTTTATTAAAGATTGTATAAAAAAGAACATTT
Unaligned ( gi|13 ): TTGTTGGAAATTGGGATGTTTGATATTCTCTTCAAAGAATTTTTCTTCAAGTATGCTATTTAGTATTAAAAATAAGTTGTCATATAAAAATTATATTCCTCAGCTGTTTGTCATGGAAACACCAGTCAAAGTAAAGCAAAACATGAAAAATATAGGCCCCACAGGAAAATGTCTGCACAGGAGACAATTTCTAATCAAGACATAACACTTCATTTTTAAAAATAAAAGTTGGATGTATGGGGATTTTTTTTAAAACTTAGATGTTTTAAGATGTATCAAAAAGAACAGTTTTTAAGGGCTGATTTCAGTAAAAATGCAAATACCGTACACCCCTTTTTCTTGCTTGTATTAAAAAAAGATTCTGAG
Unaligned ( gi|19 ): ACACTTCACTTTTTAAAAAAAAGTTCGGATATATGGGGATTGTTTTTTAAACCTAGATGTTTAAGATTGTATAAAAAAAGAACATTTTAGGGATGATTTTCAGTAAAAATGGCAAATAA
Unaligned ( gi|21 ): ACACTGATTATCTTTAAGGACCAAAATTTGCTGGAAACGGGATGTTTGATATTCTCCTACAAGTAATTTTTTTTCTTCAAGTATGCCTATTTAGTATTAAAATAAGTCGTATATAAA
Unaligned ( gi|22 ): TATTAGAATAAGTTGTATATAAAAATTATATTCATAGATGTCATGGAAACACCAATCAAATAAAGCAAACTTTGAAAATGTAGGCCCCACAGGAAAAGAGCCTACTG
Unaligned ( gi|23 ): AACACTGCTATATCTGTAAGCCAAATTGCTGGAAATTGGGAGTTTGATATTCTCCTTCAAGTAATTTTTTCTTCAAGTTAGCCTATTTAGTATTAAAATAAGTTGT
Unaligned ( gi|24 ): AACACTGATTATAAGGACCAAAATTTGCTGGAATTGGAATGTTTGATATTCTTCTACAAGTATTTTTTTCGCAAGTATGCCCATTTAGTAATTTAAAATAAGT
Unaligned ( gi|25 ): ATTTCTAAAAGCACTAGACATACACTTCACTTTTAAAAACATTCGGATGTATGGAGATTTTTTAAAAAAAAACTTAGATGTTTAAGATTGTATC
Unaligned ( gi|26 ): TGGCTCGAGAAATAGTGTTTTCACTACACTTGAAAATACAGATAGGATAAAACCGGTGATTCCGGAATATGGGCAATACTAACCTATA
Unaligned ( gi|33 ): GGCCTTAATAAAATTTAGTGAAATCGTTTATATAAATACTTGCAAATTCTTTTATCAGTCTT
Unaligned ( gi|39 ): TATATGTTGATGTGCTGTATGATATTTTATGTTTGCAAATAT
Unaligned ( gi|40 ): TGCGATTTAGAGAGCAGTAACTGAGGCCTAGCGGCTA
Alignments
lowQualScore : 1 1111 1 222 11 1 1 1111 4444444444444444444444444 11 1 22 22222222222 1 111111 11 1111 1111 111 111 1111 1 22222222222 1111 1 3333 111 1 111 2 11 11 222222 1 333333 111 111 1 1 1 111 1 1 1 1 1
lowQualScore : 1 5 77 4444 5 1 1 000 77 33 1 77 77 5 5 5 5 0 5 5 55 66 5 6666 5 66 66 88 4 77 2 555 77 4 2 55 1111111111111111111111111 33 444 4 2 2 666 2 3 88 5 1 5 1 666 44 5 5 5 5 3 888 5 5 5 5 5 77777777777 5 0 2 1 3 1 99 99 7 7 6 1 6 3 5 77 000000 5 33 5 3 5 9 2 1 1 6 77 5 5 3333 2222 6 5 8 6666 5 666 5 777 4 777 4 4444 777 4 4 5 5 5 5 3 99 1 66666666666 6 3333 1 5 6 6 6 6 6 6 3333 6 5 888 3 6 3 6 99 6 0 5 0 77 555 5 77 77 77 8 8 0 8 11 8 8 11 0 222222 3 3 3 3 0 666666 333 777 0 3 0 0 777 3 0 0 66 0 3 0 0
lowQualScore : . . .. .... . . . ... .. .. . .. .. . . . . . . . .. .. . .... . .. .. .. . .. . ... .. . . .. ......................... .. ... . . . ... . . .. . . . . ... .. . . . . . ... . . . . . ........... . . . . . . .. .. . . . . . . . .. ...... . .. . . . . . . . . .. . . .... .... . . . .... . ... . ... . ... . .... ... . . . . . . . .. . ........... . .... . . . . . . . . .... . . ... . . . . .. . . . . .. ... . .. .. .. . . . . .. . . .. . ...... . . . . . ...... ... ... . . . . ... . . . .. . . . .
lowQualScore : 4 7 99 3333 7 4 7 000 44 66 4 99 99 0 7 7 7 0 0 0 11 99 0 4444 0 99 99 22 4 99 2 777 55 4 2 33 5555555555555555555555555 11 111 7 4 4 555 4 1 44 7 0 0 9 000 99 0 6 0 0 2 888 0 7 7 7 7 11111111111 7 7 5 0 2 7 22 22 3 3 7 0 7 6 4 99 111111 7 66 7 0 0 3 5 0 0 7 99 7 7 0000 1111 6 7 7 1111 7 333 7 555 4 000 0 0000 000 0 4 7 7 7 7 3 22 0 88888888888 7 3333 3 7 7 7 7 7 7 7 8888 7 7 333 2 7 2 7 22 7 8 0 6 99 666 0 99 99 99 0 0 0 0 00 0 0 00 8 222222 2 2 2 2 0 000000 555 555 0 2 0 0 555 2 0 0 55 0 2 0 0
consensus : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA--AAA-ATAAA-T-CA--CTTT--GAGGCTGA-TTT-T-TAAAC-TGG-TACCCC-GTT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCNAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCANGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCNGTAGATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----ATA---AA-CAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA---T-------A-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
Reference ( family-664 ) : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA--AAA-ATAAA-T-CA--CTTT--GAGGCTGA-TTT-T-TAAAC-TGG-TACCCC-GTT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCNAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCANGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCNGTAGATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----ATA---AA-CAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA---T-------A-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|1 : TACGTTTTGTT-TG--AAAAA---TGAAGCACAT-ATG------------ATTTCTCAAA----TTA--AG--AAT-G--GGCTA--GAAATATTTC-TTTTATAAGTAGG-T-A-TG-GAAAATATA-AAA--AAG-ATA---------CTTT--GAGGTTGAATTT-T-GAAAC-GGG-T-CCCC---T-GATATTG--TGCTTA-AA-A-CAAA------G-A----GAGAGA---AAG---AGTC-A-AACAG---GGATTCCAGTTTA-TGGCTGAT-CTCTAA-CAAGTTAT-T-CCCTTACT-GAAAC-TTTTTC---TGTAGAAC-C-CA---TGTTTAG-GTATG-GTAAA-CCAACTTGTG-----------ACATGCAG----AAGACACTCTCTAATA-TTTGTTTTTAAATTAACTC-GT--A---TTTGTTT-CTTAA-TTCAAGGTGA-AAAGGATGAATTGTAA-TTAAA--GT--CA--GAAGTGG-AATTTTGCATAAGTGAA-TTGC-TTATGATATTGG-AAGCTTTTGGGCTGAA-TTATATTCTTGTTTG-CTGGTTTGATAACAAGAACATTCAGGTAGAT-TACATTAT----TTTTATTTGCA-ATGAATAGGTTTTTTG-CT-AAGGACAGTTTTTGGCAGTT-TG---AAAGAAGT-GTAACTAG---C-TTGAT----ATA---AA-CAG-TTTGCCG-ATCACTAAAT-ATT-GAATCTTC-AGGCAG-TTTT--G-CCACAATA---T-------A-CA-----------CGTAT-AG-AT-AAGGGCATTAAGGGGCTTAC-ACT----TCATT-GTATGT-TAATATTTT---TT-TTTCATTGAGATA-GGAT-------AAT--ACTA--ATGATTCTAATAATCGGAGT-AACAAAACCAGTTGCTTTTAGCTATGA----GTCATAA-TTGA--TATGAC-TTC--AA--T
gi|10 : actgattaatctgtaacgaagccacatttgctggaaatgggatgtttgatatctccttaaaggtagatttttttttcaagttgcgatttagtattaagaataagagtgtaatataataaatttaatcctagctgttgtaatggaaactacagtcaaacaaagcaaaacataaaatagcccccaaggaaaatagcaaatggaaacattatgctagaagaatgcactaatagcatacactgactttttaaaaaaaaaagttcggatggtatgggaattttttttataaaagttagatgttttacagattgtagtcaaaaaagaaacattttagagtcattttcagtgaagataagcaaaataattacaccctttttctgcctgtactttaaaaaaaatgtcggaggaatttgGAAACAAGGATA-T-AAATAAAATCAC-AATTGATTAATACCTTGAGTATT-ACATGTTC-TTA-TAA---CTTTATACATTTCAT-ACT-TTATTCTGTCGATTTTGA-GAGGCAGGAA
gi|11 : TGTAAATTAAAA-GT--CA--G---TGA-A--TTTGCATTA-TTAGCTTGctgagccttagggcggtattccagtttttgaactacgccatacccatgggtcccagcccataatacccatgggatggtctatgtcaataaaattatttggcaaaaaatctatatgaaaaaattttgatatgcacgtatcgaactgaaacgtcaaattgaaaatgctattataaacaaaatcacaacaaaccaactcgctaaatacctggctatactagtatacggatggctgtaacaacccccccctcctcttttaagtaagtggttaaaataagcatataatttttcatagtacagtatatgtgattttagctattactcattcctaatgatggcgcatcgaataaaagtgtggatacacacagaataaatcattgaaaatatttttacatcttgtgtttagtcccttagaaatgtgatttgacacctaattaac
gi|11 : ATTAG---CTTGTT-G-CTGGTTTCATAACAAGAAAATATCTCTACATCTACATTAT----TTTTATGTGCA-ATGAGTACGATTTT-G-AT-AA-GAC--TTTCT-GCAGTTATG---AAAGAAAT-ATAACTAG---C-TTGAT----ATA---AA-CAGCTTTGCCG-AACACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA---C-------A-TAA--TTTTT-GTCCTAT-GC-AT-AG-GATATT-AGGGGCTTAC-ACTTC----ATT-ATATGTGCAATATTTT---TCAATTAATTTACATA-ATATG-TGAAAAAG--ACCA-CACGATTCTAAAGA-CGGAGTAAAGAAAACCAGTT--CTCTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAttgctggtttcataacaagaaaatatctctacatctacattatttttatgtgcaatgagtacgattttgataagactttctgcagttatgaaagaaatataactagcttgatataaacagctttgccgaacacaacatattgaacttcaggcaagtttgcccacaatacataatttttgtcctatgcataggatattaggggcttacacttcattatatgtgcaatatttttcaattaatttacataatatgtgaaaaagaccacacgattctaaagacggagtaaagaaaaccagttctctagctatgacgtcataattgatatgactttcaatgacgtttga
gi|14 : tgtaaattaaaagtcagtgaatttgcattTAACTAGAGTCGTTGAT----A-----AA-CCACTTTGCCGGACCACAACAT-ATTGGAA-CTTCAAGGCAAGGTTTGAGCCCAAGATACGTT-------A-TAGTTTTTTTTGTC-TATAGCGATAAA-GGC----AGTGGCTTAC-ACT----TCATT-TTATGTCGAATATGTTATGTCAATCTAAT--GATAGATATGTTGATACAGTTGTCATCATGTTGCTAATGA-CTGAGT
gi|15 : AAT-GTAACTAG---C-TTGAT----ATA---AA-CAACTTTGCCG-A
gi|15 : CGATTCTAAAGA-CGGGGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CAT-CA-TGGA--TGTA-CTTTA-GC--TATATT-CA--GAGATCTTAGAGAAAGAAAACTGGAATGAAAGAttctaaagacggggtaaacaaaaccagttctttagctatgacgtcataattgatatgactttcaatgacgtttgaatgtacatgtgacgacatcatggatgtactttagctatattcagagatcttagagaaagaaaactggaatgaaaga
gi|16 : aatgtaactagcttgatataaacaactttgcCGATTCTAAAGA-CGGA---AACAAA-CCA--T--CTTTACCTATTACACCGTCATAACTTGA--TATGACTTTC--AA--TAACGTC--AAT-TACACTGTGACGA-CATCCA-TGCAACTAAA-CTTTA-GCCTCATAATGCA---GAATCTTAGA-AAAGAAA
gi|17 : gataaataaacaaacccgtccTAC-ATTTCA-TC-TT-ATATGTACAATATTTTT--TCAATTCAATTAGATA-ATATG-CGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTG--TTTTAGCTATGAC---GTCATAA-T
gi|18 : TT-T-TAAAC-TTG--ACCCCTATT-GAT-TTG--TGCTAA-AA-A-CAAT------G-----AGAGAGA--CAAG---AATC-A-T-C-G---GG-TACCAGTTTA-TG-CTGAT-CTATAA-CAAGTTAT-TTCCCTTAC-TGAAAC-TCTTTTAAGT-agggcgagaaagtttcgaagttac
gi|2 : aaTCTTTACCTTTTGTTATGGTAAAAAA--TGAA-CACAT-A-ACTTGACCTAACAACTTCTCAAAAAAATTA-TACC-AAT-G--ACTCACAAGAA-ATATC-TTATACAAG-ATG-C-A-AAAGAAAATACA-AAA--AAA-ATAAA-T-CAGCCTTTTCGA-GCTGA--TT-T-TAAACTTTC-TCCCCC-ATG-TAA-TTG--TGCTAA-AA-A-CAAAACTAATG-A---GAAGAAA--CAAGACAAGTC-ACA-AAA---AC-TACCAGTTTA-TG-CTGAT-CCAAAA-CAA-TTATGCCCCCTTAC-TGAAACTTCTTTTAA---TAGAAATCACATAGT-TCTAGT-TA-G-GCAAACC-AACTT--------------ACATGCAG-CATAA-ACACTCC---ATAC--TG---CTTAATTAA-TCAGT--AC--TTTG-TTTCTTAATTTCAAGGTGACAAAAAATGAATT---AATT--AAAGTCCCAACA---TGATA--TTTGCACAA-T-AGC-TGC--TAT-ATATT-ACATACTTTTGG-CTGAAATTTGA--CT--TT-GTCTCCTTTGATAACAA-AAAATTTCTG-AAATCTACATTATTATATTTTATGTGCACATAAATAAATTATCTGAATAAA-GAC----TTT-GCAGTTATGACAAAAAAAATAATGACTAG---C-TTGATAA--ATA---AA-Caattatcagttaattttattt
gi|20 : ccactgatatatcttaaggacccaaaaaaattttgctggaaacggtagtttgatactcactacatcagttacattttgttttcttcaagtaggcctaactagtattaaaatacatcctatataaaaataacttctcctagctcgttgtcagctggaaacaccagtcaaataaagcaaaatacataaagatagacccgacagaaaatagcccactgaacacatttcttaacaaccataaacaatcatacaccttcacttctttaaaaaaaagtcacattatgggaattttttttctaaatcattaacaccatatggttaacttcgcctttttgaatgtttaacagataaaaagaacaattttagcgatttcacagtaaaaagtccgcccaacaataaacccccttcttgctatttaacaagaattgtgaaaatt-A-TA-GAAAATACA-AAA--AAA-GT----T-CA--CTTT--GAGGCTGA-TTT-T-TAA-C-TGG-TCCCCC-ATT-GAT-TTG--TGCTAA-AA-A-CAAA------G-----AGAGAGA--
gi|27 : gacattttttttatttctggtataactgtgttaaa-TAAAC-TGG-TACCCC-GTT-GAT-TTGG-TACT-A-CACA-CAAACTC---G-A---GAAAAG---CGAG---AGCC-A-A-CAG---GG-TATCAGTTTA-t
gi|28 : cAAC-TGGATACCTC-GTTTGAT-TGG--TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAG---AGTCGA-A-CAG---GT-TACCAGTTTa
gi|29 : AAC-TGGATACCTC-GTTTGAT-TGG--TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAG---AGTCGA-A-CAG---GT-TACCAGTTT
gi|3 : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGGACAT-ATACTTGACCTA-CAACTTCACAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-CCA-TA-GAAAATACACAAA--AAA-AAAAA-TTCA--CTTT--GAG-TTGA-TTTAT-TAAAC-TGG---CCCC-ATT-GAT-TTG--TGTT-A-AA-A-CAAA------G-A---AGAGAGA--CAAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCTAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAAAAA-C-CA---T-TTTAGTGTA-G-GTAAA-C-AACT-GTG-----------ACATGCAGACAGA---CACTCTTAAGTACTTTGTTTCTTA-TTA-TTCAGTGGACGATTTGTTTTCTTAA-TTCATGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TAAGCTTGCCTTATGATATTGATAAGGTTTTGG-GTGAAATTAGA--CTTGTT-G-CTGGTTTGATAATAAGA-------------TCTATATTAT----TTTTATTTGCC-TTGAATAAGTTTTTTG-CT-AA-GAC--TTTTT-GCAGTTATA---GAAGAAAT-GTAACTAG---C-TTGAT----ATA---AAACAGCTTTGCCG-ACCACAACAC-ATT-GAA-CTTC-AGGCAA-GTTT--GTCCACAATA---TTATTTTTA-TAG--TTTTT-GTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTCGATCATT-ATATGTACAATATTTT---TCAATTCAATTAGCTA-ATATG-TGAAAAAG--ACTA-CATGATTGTAATGA-CGGAGTGAACAAAACCAGTG--CTTGAGGTATGAC---GCTATAA-ATGA--TATGACTTGA--AA--TGGCGATTGACGGTACA-GGTGACGA-CAT-GA-TGGA--TGTA-CTTTA-GC--TATATT-TA--GGGATCTTAGAGAAAGAAAACTTGAATGAAAGAAACAAGGATAAT-AAATAAA----TAAAT-AATTAATAG---GAGTATT-ACATATTCTTTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|30 : AAC-TGG-TACCCCCATT-GAT-TGG--TGCT-A-CACG-CAAACTT---G-A----GAGAAG--CGAG---AGCC-A-A-CAG---GA-TACCAGTTTA-
gi|31 : tAAC-TGG-CACCCT-GTT-GAT-TGT--TGCT-A-CACA-CAAA------C-G---AGATAGAAGTGAG---AGCC-A-A-CAG---GG-TACCAGTTT
gi|32 : CAGTTATG---AGAGAAAT-GTAACTAG---C-TTGATTTTTAT-------TAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-
gi|34 : AAC-TGA-TACCCC-GTT-GAT-TTG--TGCT------A-C-----------A---CGAGAAG--CGAG----GTC-A-A-CAGA--GG-TACCAGTTTA-
gi|35 : -TAAAG-TGG-TACCCC-GTT-G---TTGGCTGCT-A-CA-C-CAA
gi|36 : ctccgtgaagcgAC-TGG-TACCCC-ACT-GAT-TGG--TGCT---------------------------------CGAG---AGGC-A-A-CAG---GG-TACCAGT
gi|37 : AGAAA-CACA---G-TTTAATGTA-A-GTAAA-C-AACTTGTG-----------ACATGCAG-CAG
gi|38 : ---AGAGAAG--TGAG---AGCC-A-A-CAGCCTGG-TACCAGTTTA-T
gi|4 : actcgAA-CAA--TAT-T-CCCTTACT-GAAAC--CTTTTAA-T-TAGAAA-CACA---T-TC--ATGTA-GAGTAAA-C-AACTTGTGACCCAAGTGTGACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTG-TTTCTTAA-TTCATGGTGA-AAAAGATGAATTGT-AATTAAAA--T--CA--G---TGA-AT-TTTGCATAA-TGAGC-TGCCTT----TATTAACAACTTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCAGT-GAACTACATTAT----TTTAAT-TGCA-ATGAATAAG-TTTTTG-CA-AA-GAC---TTTT-GCAGTTA--------------GTAACTAG---C-TTGAT----ATAATTAA-CAGC-TTGCCG-ACCACAACATAATT-GAA-CTTC-AGGCAAGGTTT--GCCCACAATA---T-------ATTAG---TATTTGTCTTAT-GC-AT-AG-GGCATT-AGGGGCTTACGACT----TCATTGATATGTACAA-ATATT---TCAATTCAATTAGATA-A-ATG-TGAAAAAG--ACTA-CATGATTCTAATGA-CGGAGT-AACAAAACCAGTT--C-TTATCTATGAC---GTCATAA-TTGA--TATAAATTTCAAAA--TGACGTTTG-ATGTACA-TGT---GA-CAT-CA-TGGA--TGTCTCTTTG-GC--C-TATTATA---GGATCTTAGAGAAAGAAAACTGGAGTGAAAGAAACAAGGATAAT-AAATAAA----TCAAT-GATTAATAC---GAGTAAT-ACA-GTTC-TTT-AAA---CTTTAGACA-TTCAT-ACT-TT-TTCTG-CGA-TCTGA-G-GGCAGTAAag
gi|41 : tAAC-TGG-TACCCC-ATT-GAT-TGG--TGCT-ACAC-A-CAAA------ctgaggcctagcggctag
gi|42 : tGAGA--CACG---AGTC-A-A-CAG---GG-TACCAGTTTA-TACc
gi|5 : TAT-TTTTGTT-TG--AAAAAA--TGAAGCACAC-ATACGTGACCTA-CAACTTCTCAAAA---TTA-TAG--AATTG--GCTCA--AGAATATTTC-TTTTATGAG-AGG-CTA-TA-GAAAATACC-AAA--AAATGT----T-CA--CTTT--AAGGCTGA-TTT-T--AAAC-TGG-TCCCCC-ATT-GAT-TTG--TGCT-A-AA-A---AT------A-A---AGAGAGA--CAAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGC-TAAT-ATCAAA-CAACTTAT-TTCCCTTACT-GGAAC-TCTTTTAAGT-TAGAAA-TATA---T-TTTAGTGTA-G-GAAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTCTTTCTTTCTTAATTCAGT--AC--TTTGTTT-CTTAA-TCCATGGTGA-AAAGGATGAATTGTGAAT-AAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAAA--CTTCTT-G-CTGATTTGATAACAAGAAAATTTCAGTAGATCTACATTAT----TTTTATTTGCA-ATGAATAAG-----TG--------------TTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TGGAT----ATA---AA-CAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-TTTT--GCCCACAGTG---T-------A-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGG
gi|6 : ataattacaccctttttctccttatatttttaaaaaaaatgtctgaggaatgTCTTTAC-TTTTGTT-GG--AAAAA----GAAGCACAT-ATACTTGACCTAACAACTTCTCAAAAAGATTAATAACAAAT-GCGACTCA--AGAATATTTCCTTTTACAAG-AGG-C-AATG-AGAAATACA-AAA--AAA-ATAAAAT-CA--CTTT--GAGGATGA-TTT-T--AAAC-TGG-TCCCCA-TTT-GAT-TTG--TGCT-A-AA-AACAAA------G-AGAGAGAGAGA--CAAA---AGTC-A-A-CAA---G--TACCAGTTTAATGC-TGATTCTCAAAACAA-TTAT-TTCCCTTACT-GAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GCAAA-C-AACTTGTG-----------ACATGCAG-CATAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTT-TTAA-TTCAAGGTGA-AAAAGATGAATTGTAAATTAAAA-GT--CA--G---TGA-A--TTTGCACAA-TGAGCTTGCTTTATGATATTGACAAGCTTTTGG-CTGAAATTGGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCTGTAGATCTACATTAT----TTTTATGTGCA-ATGAATAAATTTTTTG-AT-AA-GAC--TTTTT-GCAGTTATGAAAAAAAAAAT-GTAACTAG---C-TTGAT----ATA---AA-CAACTTTGCCG-A
gi|7 : aacattttagggctgattttcagtaaaaattgcaaataattacccccttttctgcttgtattttaaaagaatgtggttgaggaattgTATGATCG-GTCA-AA-TTGAATTATGACTTTC--AAAATGACGTTTGAATGTACA-T-TGACGAACATCAAATGGA--TGTA-CTTTAAGC--TATACTGTATAGGGACCTTAAGAAAAGAAAACTGGAA-GAAAGAAACAAGGA-AATAAAATCAA----T-AA---ATTAATAC---GAGTATTAACATATTC-CTTATAAAACCTTTAGACATTTCATAACTGTTA-TCTG-CGATTCTGAGG-GGCAGTAt
gi|8 : CTTTAC-TTTTGTT-TG--AAAAAA---AAAGCACAT-ATACTTGACCTA-CATCTTCTCAAAA---TTA-AAG--AATGG--GCTCA--ATAATATTTC-TTTAATAAG-AGGCC-A-TA-G-AAATAC--------AA-ATAAATT-CA--CTTT--GAGGCTGA-TTT-TAGAAAC-TGG-TTCCCC-ATT-GAT-TTG--TGCT----A-A-CAAA----------------------------AGTC-A-A-CAG---GG-TACCAGTTTA-TG-TTGAT-CTCAAA-CAAGTTAT-GTCCCCTAC-TGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-ctgaggccttatgcggctagtccatttgaactagcctcccctccgggtcccaccccaatatacccagaaaatggtctattcataaagttattggcaaagaatcagtcaaaatttgatatgcacgtatcgaactgaacgtcaaaatgtgaagaaattgcaaaaacaaaaatccaacaaccaaccaactcgcttaaatacctatactagtatgacggatggcctgtacacacacccccctcttttaagtaagtgttaataagatacattttttgcatagatacatttatattcgattgtgtgcttatatcatgttgctaatggactgcgctataacaagtgtttttttatgcgatttaaagtgagaacaacacagataaatcagtggaaataattttgacatccttgtagtcttttagtctcctagttatgtgatttcgacacacctaattagcat
gi|9 : cactgataatcagtaaggaccaaacttttctggaaatgggatggttgatattctcctacaagtaattttttcttcaagtatatctatttaggattaaaataagtgttgtatatgaaaattatatacctagctgttgtcatggaaacaccagtcaaataaagcatatcatgaaaatttaggccccacaggaaaatagcccactggaaacatttctaaatgcactagatgtacacttcactttttaaaaaaacgttcggatgtatggggaatttttttaaaacatagatgtttaagattgtatcaaaaagaacatttaagggctaattttcagtaaaaatgacaaataattacccccctttctgcttgtattgtaaaaaaaagtcttgatgaattgTCTTT-C-GTTTGTT-TG--AAAAAAAATGAAGCACATTATACTTGGACCA-CAACTTC--AAAA---TTA-TAG--AAT-G--GCTCA--AGAA-ATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAACAAAA-AAAAA-T-CA--CTTT--GAGGCTGA--TT-T-TAAAC-TGG-CCCTCC-ATT-GA--TTG--TTCT-ATAA-A-CAAA------G-----AGAGAAA--CAAG---AG-C-A-A-CA----GG-TACCAGTTTA-T
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACACTGATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTTGATATTCTCCTACAAATATTTTTGTCTTCAAGTATGCCTATAGACTCTATTCACGCGTCGGCCATAAAAATACGAAAACGAGGCTGCCTATTTAGTATTAAAATAAGTTGTATATACAAATTATATTCCTAGCTGTTGTCATGGAAACACCAGTCAAATAAAGCAAAACATGAAAATATAGGCCCCACAGGAAAATAGCCCACTGGAAACATTTCTAAATGCACTAGACATACACTTCACTATTTAAAAAAAAGTTTGGATGTATCGGGATTTTTTTTAAAAACTTAGATGTTTATTAAAGATTGTATAAAAAAGAACATTT
Unaligned ( gi|13 ): TTGTTGGAAATTGGGATGTTTGATATTCTCTTCAAAGAATTTTTCTTCAAGTATGCTATTTAGTATTAAAAATAAGTTGTCATATAAAAATTATATTCCTCAGCTGTTTGTCATGGAAACACCAGTCAAAGTAAAGCAAAACATGAAAAATATAGGCCCCACAGGAAAATGTCTGCACAGGAGACAATTTCTAATCAAGACATAACACTTCATTTTTAAAAATAAAAGTTGGATGTATGGGGATTTTTTTTAAAACTTAGATGTTTTAAGATGTATCAAAAAGAACAGTTTTTAAGGGCTGATTTCAGTAAAAATGCAAATACCGTACACCCCTTTTTCTTGCTTGTATTAAAAAAAGATTCTGAG
Unaligned ( gi|19 ): ACACTTCACTTTTTAAAAAAAAGTTCGGATATATGGGGATTGTTTTTTAAACCTAGATGTTTAAGATTGTATAAAAAAAGAACATTTTAGGGATGATTTTCAGTAAAAATGGCAAATAA
Unaligned ( gi|21 ): ACACTGATTATCTTTAAGGACCAAAATTTGCTGGAAACGGGATGTTTGATATTCTCCTACAAGTAATTTTTTTTCTTCAAGTATGCCTATTTAGTATTAAAATAAGTCGTATATAAA
Unaligned ( gi|22 ): TATTAGAATAAGTTGTATATAAAAATTATATTCATAGATGTCATGGAAACACCAATCAAATAAAGCAAACTTTGAAAATGTAGGCCCCACAGGAAAAGAGCCTACTG
Unaligned ( gi|23 ): AACACTGCTATATCTGTAAGCCAAATTGCTGGAAATTGGGAGTTTGATATTCTCCTTCAAGTAATTTTTTCTTCAAGTTAGCCTATTTAGTATTAAAATAAGTTGT
Unaligned ( gi|24 ): AACACTGATTATAAGGACCAAAATTTGCTGGAATTGGAATGTTTGATATTCTTCTACAAGTATTTTTTTCGCAAGTATGCCCATTTAGTAATTTAAAATAAGT
Unaligned ( gi|25 ): ATTTCTAAAAGCACTAGACATACACTTCACTTTTAAAAACATTCGGATGTATGGAGATTTTTTAAAAAAAAACTTAGATGTTTAAGATTGTATC
Unaligned ( gi|26 ): TGGCTCGAGAAATAGTGTTTTCACTACACTTGAAAATACAGATAGGATAAAACCGGTGATTCCGGAATATGGGCAATACTAACCTATA
Unaligned ( gi|33 ): GGCCTTAATAAAATTTAGTGAAATCGTTTATATAAATACTTGCAAATTCTTTTATCAGTCTT
Unaligned ( gi|39 ): TATATGTTGATGTGCTGTATGATATTTTATGTTTGCAAATAT
Unaligned ( gi|40 ): TGCGATTTAGAGAGCAGTAACTGAGGCCTAGCGGCTA
Alignments
lowQualScore : 1 1111 1 222 11 1 1 1111 4444444444444444444444444 11 1 22 22222222222 1 111111 11 1111 1111 111 111 1111 1 22222222222 1111 1 3333 111 1 111 2 11 11 222222 1 333333 111 111 1 1 1 111 1 1 1 1 1
lowQualScore : 1 5 77 4444 5 1 1 000 77 33 1 77 77 5 5 5 5 0 5 5 55 66 5 6666 5 66 66 88 4 77 2 555 77 4 2 55 1111111111111111111111111 33 444 4 2 2 666 2 3 88 5 1 5 1 666 44 5 5 5 5 3 888 5 5 5 5 5 77777777777 5 0 2 1 3 1 99 99 7 7 6 1 6 3 5 77 000000 5 33 5 3 5 9 2 1 1 6 77 5 5 3333 2222 6 5 8 6666 5 666 5 777 4 777 4 4444 777 4 4 5 5 5 5 3 99 1 66666666666 6 3333 1 5 6 6 6 6 6 6 3333 6 5 888 3 6 3 6 99 6 0 5 0 77 555 5 77 77 77 8 8 0 8 11 8 8 11 0 222222 3 3 3 3 0 666666 333 777 0 3 0 0 777 3 0 0 66 0 3 0 0
lowQualScore : . . .. .... . . . ... .. .. . .. .. . . . . . . . .. .. . .... . .. .. .. . .. . ... .. . . .. ......................... .. ... . . . ... . . .. . . . . ... .. . . . . . ... . . . . . ........... . . . . . . .. .. . . . . . . . .. ...... . .. . . . . . . . . .. . . .... .... . . . .... . ... . ... . ... . .... ... . . . . . . . .. . ........... . .... . . . . . . . . .... . . ... . . . . .. . . . . .. ... . .. .. .. . . . . .. . . .. . ...... . . . . . ...... ... ... . . . . ... . . . .. . . . .
lowQualScore : 4 7 99 3333 7 4 7 000 44 66 4 99 99 0 7 7 7 0 0 0 11 99 0 4444 0 99 99 22 4 99 2 777 55 4 2 33 5555555555555555555555555 11 111 7 4 4 555 4 1 44 7 0 0 9 000 99 0 6 0 0 2 888 0 7 7 7 7 11111111111 7 7 5 0 2 7 22 22 3 3 7 0 7 6 4 99 111111 7 66 7 0 0 3 5 0 0 7 99 7 7 0000 1111 6 7 7 1111 7 333 7 555 4 000 0 0000 000 0 4 7 7 7 7 3 22 0 88888888888 7 3333 3 7 7 7 7 7 7 7 8888 7 7 333 2 7 2 7 22 7 8 0 6 99 666 0 99 99 99 0 0 0 0 00 0 0 00 8 222222 2 2 2 2 0 000000 555 555 0 2 0 0 555 2 0 0 55 0 2 0 0
consensus : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA--AAA-ATAAA-T-CA--CTTT--GAGGCTGA-TTT-T-TAAAC-TGG-TACCCC-GTT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCNAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCANGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCNGTAGATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----ATA---AA-CAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA---T-------A-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
Reference ( family-664 ) : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA--AAA-ATAAA-T-CA--CTTT--GAGGCTGA-TTT-T-TAAAC-TGG-TACCCC-GTT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCNAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCANGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCNGTAGATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----ATA---AA-CAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA---T-------A-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|1 : TACGTTTTGTT-TG--AAAAA---TGAAGCACAT-ATG------------ATTTCTCAAA----TTA--AG--AAT-G--GGCTA--GAAATATTTC-TTTTATAAGTAGG-T-A-TG-GAAAATATA-AAA--AAG-ATA---------CTTT--GAGGTTGAATTT-T-GAAAC-GGG-T-CCCC---T-GATATTG--TGCTTA-AA-A-CAAA------G-A----GAGAGA---AAG---AGTC-A-AACAG---GGATTCCAGTTTA-TGGCTGAT-CTCTAA-CAAGTTAT-T-CCCTTACT-GAAAC-TTTTTC---TGTAGAAC-C-CA---TGTTTAG-GTATG-GTAAA-CCAACTTGTG-----------ACATGCAG----AAGACACTCTCTAATA-TTTGTTTTTAAATTAACTC-GT--A---TTTGTTT-CTTAA-TTCAAGGTGA-AAAGGATGAATTGTAA-TTAAA--GT--CA--GAAGTGG-AATTTTGCATAAGTGAA-TTGC-TTATGATATTGG-AAGCTTTTGGGCTGAA-TTATATTCTTGTTTG-CTGGTTTGATAACAAGAACATTCAGGTAGAT-TACATTAT----TTTTATTTGCA-ATGAATAGGTTTTTTG-CT-AAGGACAGTTTTTGGCAGTT-TG---AAAGAAGT-GTAACTAG---C-TTGAT----ATA---AA-CAG-TTTGCCG-ATCACTAAAT-ATT-GAATCTTC-AGGCAG-TTTT--G-CCACAATA---T-------A-CA-----------CGTAT-AG-AT-AAGGGCATTAAGGGGCTTAC-ACT----TCATT-GTATGT-TAATATTTT---TT-TTTCATTGAGATA-GGAT-------AAT--ACTA--ATGATTCTAATAATCGGAGT-AACAAAACCAGTTGCTTTTAGCTATGA----GTCATAA-TTGA--TATGAC-TTC--AA--T
gi|10 : actgattaatctgtaacgaagccacatttgctggaaatgggatgtttgatatctccttaaaggtagatttttttttcaagttgcgatttagtattaagaataagagtgtaatataataaatttaatcctagctgttgtaatggaaactacagtcaaacaaagcaaaacataaaatagcccccaaggaaaatagcaaatggaaacattatgctagaagaatgcactaatagcatacactgactttttaaaaaaaaaagttcggatggtatgggaattttttttataaaagttagatgttttacagattgtagtcaaaaaagaaacattttagagtcattttcagtgaagataagcaaaataattacaccctttttctgcctgtactttaaaaaaaatgtcggaggaatttgGAAACAAGGATA-T-AAATAAAATCAC-AATTGATTAATACCTTGAGTATT-ACATGTTC-TTA-TAA---CTTTATACATTTCAT-ACT-TTATTCTGTCGATTTTGA-GAGGCAGGAA
gi|11 : TGTAAATTAAAA-GT--CA--G---TGA-A--TTTGCATTA-TTAGCTTGctgagccttagggcggtattccagtttttgaactacgccatacccatgggtcccagcccataatacccatgggatggtctatgtcaataaaattatttggcaaaaaatctatatgaaaaaattttgatatgcacgtatcgaactgaaacgtcaaattgaaaatgctattataaacaaaatcacaacaaaccaactcgctaaatacctggctatactagtatacggatggctgtaacaacccccccctcctcttttaagtaagtggttaaaataagcatataatttttcatagtacagtatatgtgattttagctattactcattcctaatgatggcgcatcgaataaaagtgtggatacacacagaataaatcattgaaaatatttttacatcttgtgtttagtcccttagaaatgtgatttgacacctaattaac
gi|11 : ATTAG---CTTGTT-G-CTGGTTTCATAACAAGAAAATATCTCTACATCTACATTAT----TTTTATGTGCA-ATGAGTACGATTTT-G-AT-AA-GAC--TTTCT-GCAGTTATG---AAAGAAAT-ATAACTAG---C-TTGAT----ATA---AA-CAGCTTTGCCG-AACACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA---C-------A-TAA--TTTTT-GTCCTAT-GC-AT-AG-GATATT-AGGGGCTTAC-ACTTC----ATT-ATATGTGCAATATTTT---TCAATTAATTTACATA-ATATG-TGAAAAAG--ACCA-CACGATTCTAAAGA-CGGAGTAAAGAAAACCAGTT--CTCTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAttgctggtttcataacaagaaaatatctctacatctacattatttttatgtgcaatgagtacgattttgataagactttctgcagttatgaaagaaatataactagcttgatataaacagctttgccgaacacaacatattgaacttcaggcaagtttgcccacaatacataatttttgtcctatgcataggatattaggggcttacacttcattatatgtgcaatatttttcaattaatttacataatatgtgaaaaagaccacacgattctaaagacggagtaaagaaaaccagttctctagctatgacgtcataattgatatgactttcaatgacgtttga
gi|14 : tgtaaattaaaagtcagtgaatttgcattTAACTAGAGTCGTTGAT----A-----AA-CCACTTTGCCGGACCACAACAT-ATTGGAA-CTTCAAGGCAAGGTTTGAGCCCAAGATACGTT-------A-TAGTTTTTTTTGTC-TATAGCGATAAA-GGC----AGTGGCTTAC-ACT----TCATT-TTATGTCGAATATGTTATGTCAATCTAAT--GATAGATATGTTGATACAGTTGTCATCATGTTGCTAATGA-CTGAGT
gi|15 : AAT-GTAACTAG---C-TTGAT----ATA---AA-CAACTTTGCCG-A
gi|15 : CGATTCTAAAGA-CGGGGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CAT-CA-TGGA--TGTA-CTTTA-GC--TATATT-CA--GAGATCTTAGAGAAAGAAAACTGGAATGAAAGAttctaaagacggggtaaacaaaaccagttctttagctatgacgtcataattgatatgactttcaatgacgtttgaatgtacatgtgacgacatcatggatgtactttagctatattcagagatcttagagaaagaaaactggaatgaaaga
gi|16 : aatgtaactagcttgatataaacaactttgcCGATTCTAAAGA-CGGA---AACAAA-CCA--T--CTTTACCTATTACACCGTCATAACTTGA--TATGACTTTC--AA--TAACGTC--AAT-TACACTGTGACGA-CATCCA-TGCAACTAAA-CTTTA-GCCTCATAATGCA---GAATCTTAGA-AAAGAAA
gi|17 : gataaataaacaaacccgtccTAC-ATTTCA-TC-TT-ATATGTACAATATTTTT--TCAATTCAATTAGATA-ATATG-CGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTG--TTTTAGCTATGAC---GTCATAA-T
gi|18 : TT-T-TAAAC-TTG--ACCCCTATT-GAT-TTG--TGCTAA-AA-A-CAAT------G-----AGAGAGA--CAAG---AATC-A-T-C-G---GG-TACCAGTTTA-TG-CTGAT-CTATAA-CAAGTTAT-TTCCCTTAC-TGAAAC-TCTTTTAAGT-agggcgagaaagtttcgaagttac
gi|2 : aaTCTTTACCTTTTGTTATGGTAAAAAA--TGAA-CACAT-A-ACTTGACCTAACAACTTCTCAAAAAAATTA-TACC-AAT-G--ACTCACAAGAA-ATATC-TTATACAAG-ATG-C-A-AAAGAAAATACA-AAA--AAA-ATAAA-T-CAGCCTTTTCGA-GCTGA--TT-T-TAAACTTTC-TCCCCC-ATG-TAA-TTG--TGCTAA-AA-A-CAAAACTAATG-A---GAAGAAA--CAAGACAAGTC-ACA-AAA---AC-TACCAGTTTA-TG-CTGAT-CCAAAA-CAA-TTATGCCCCCTTAC-TGAAACTTCTTTTAA---TAGAAATCACATAGT-TCTAGT-TA-G-GCAAACC-AACTT--------------ACATGCAG-CATAA-ACACTCC---ATAC--TG---CTTAATTAA-TCAGT--AC--TTTG-TTTCTTAATTTCAAGGTGACAAAAAATGAATT---AATT--AAAGTCCCAACA---TGATA--TTTGCACAA-T-AGC-TGC--TAT-ATATT-ACATACTTTTGG-CTGAAATTTGA--CT--TT-GTCTCCTTTGATAACAA-AAAATTTCTG-AAATCTACATTATTATATTTTATGTGCACATAAATAAATTATCTGAATAAA-GAC----TTT-GCAGTTATGACAAAAAAAATAATGACTAG---C-TTGATAA--ATA---AA-Caattatcagttaattttattt
gi|20 : ccactgatatatcttaaggacccaaaaaaattttgctggaaacggtagtttgatactcactacatcagttacattttgttttcttcaagtaggcctaactagtattaaaatacatcctatataaaaataacttctcctagctcgttgtcagctggaaacaccagtcaaataaagcaaaatacataaagatagacccgacagaaaatagcccactgaacacatttcttaacaaccataaacaatcatacaccttcacttctttaaaaaaaagtcacattatgggaattttttttctaaatcattaacaccatatggttaacttcgcctttttgaatgtttaacagataaaaagaacaattttagcgatttcacagtaaaaagtccgcccaacaataaacccccttcttgctatttaacaagaattgtgaaaatt-A-TA-GAAAATACA-AAA--AAA-GT----T-CA--CTTT--GAGGCTGA-TTT-T-TAA-C-TGG-TCCCCC-ATT-GAT-TTG--TGCTAA-AA-A-CAAA------G-----AGAGAGA--
gi|27 : gacattttttttatttctggtataactgtgttaaa-TAAAC-TGG-TACCCC-GTT-GAT-TTGG-TACT-A-CACA-CAAACTC---G-A---GAAAAG---CGAG---AGCC-A-A-CAG---GG-TATCAGTTTA-t
gi|28 : cAAC-TGGATACCTC-GTTTGAT-TGG--TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAG---AGTCGA-A-CAG---GT-TACCAGTTTa
gi|29 : AAC-TGGATACCTC-GTTTGAT-TGG--TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAG---AGTCGA-A-CAG---GT-TACCAGTTT
gi|3 : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGGACAT-ATACTTGACCTA-CAACTTCACAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-CCA-TA-GAAAATACACAAA--AAA-AAAAA-TTCA--CTTT--GAG-TTGA-TTTAT-TAAAC-TGG---CCCC-ATT-GAT-TTG--TGTT-A-AA-A-CAAA------G-A---AGAGAGA--CAAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCTAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAAAAA-C-CA---T-TTTAGTGTA-G-GTAAA-C-AACT-GTG-----------ACATGCAGACAGA---CACTCTTAAGTACTTTGTTTCTTA-TTA-TTCAGTGGACGATTTGTTTTCTTAA-TTCATGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TAAGCTTGCCTTATGATATTGATAAGGTTTTGG-GTGAAATTAGA--CTTGTT-G-CTGGTTTGATAATAAGA-------------TCTATATTAT----TTTTATTTGCC-TTGAATAAGTTTTTTG-CT-AA-GAC--TTTTT-GCAGTTATA---GAAGAAAT-GTAACTAG---C-TTGAT----ATA---AAACAGCTTTGCCG-ACCACAACAC-ATT-GAA-CTTC-AGGCAA-GTTT--GTCCACAATA---TTATTTTTA-TAG--TTTTT-GTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTCGATCATT-ATATGTACAATATTTT---TCAATTCAATTAGCTA-ATATG-TGAAAAAG--ACTA-CATGATTGTAATGA-CGGAGTGAACAAAACCAGTG--CTTGAGGTATGAC---GCTATAA-ATGA--TATGACTTGA--AA--TGGCGATTGACGGTACA-GGTGACGA-CAT-GA-TGGA--TGTA-CTTTA-GC--TATATT-TA--GGGATCTTAGAGAAAGAAAACTTGAATGAAAGAAACAAGGATAAT-AAATAAA----TAAAT-AATTAATAG---GAGTATT-ACATATTCTTTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|30 : AAC-TGG-TACCCCCATT-GAT-TGG--TGCT-A-CACG-CAAACTT---G-A----GAGAAG--CGAG---AGCC-A-A-CAG---GA-TACCAGTTTA-
gi|31 : tAAC-TGG-CACCCT-GTT-GAT-TGT--TGCT-A-CACA-CAAA------C-G---AGATAGAAGTGAG---AGCC-A-A-CAG---GG-TACCAGTTT
gi|32 : CAGTTATG---AGAGAAAT-GTAACTAG---C-TTGATTTTTAT-------TAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-
gi|34 : AAC-TGA-TACCCC-GTT-GAT-TTG--TGCT------A-C-----------A---CGAGAAG--CGAG----GTC-A-A-CAGA--GG-TACCAGTTTA-
gi|35 : -TAAAG-TGG-TACCCC-GTT-G---TTGGCTGCT-A-CA-C-CAA
gi|36 : ctccgtgaagcgAC-TGG-TACCCC-ACT-GAT-TGG--TGCT---------------------------------CGAG---AGGC-A-A-CAG---GG-TACCAGT
gi|37 : AGAAA-CACA---G-TTTAATGTA-A-GTAAA-C-AACTTGTG-----------ACATGCAG-CAG
gi|38 : ---AGAGAAG--TGAG---AGCC-A-A-CAGCCTGG-TACCAGTTTA-T
gi|4 : actcgAA-CAA--TAT-T-CCCTTACT-GAAAC--CTTTTAA-T-TAGAAA-CACA---T-TC--ATGTA-GAGTAAA-C-AACTTGTGACCCAAGTGTGACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTG-TTTCTTAA-TTCATGGTGA-AAAAGATGAATTGT-AATTAAAA--T--CA--G---TGA-AT-TTTGCATAA-TGAGC-TGCCTT----TATTAACAACTTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCAGT-GAACTACATTAT----TTTAAT-TGCA-ATGAATAAG-TTTTTG-CA-AA-GAC---TTTT-GCAGTTA--------------GTAACTAG---C-TTGAT----ATAATTAA-CAGC-TTGCCG-ACCACAACATAATT-GAA-CTTC-AGGCAAGGTTT--GCCCACAATA---T-------ATTAG---TATTTGTCTTAT-GC-AT-AG-GGCATT-AGGGGCTTACGACT----TCATTGATATGTACAA-ATATT---TCAATTCAATTAGATA-A-ATG-TGAAAAAG--ACTA-CATGATTCTAATGA-CGGAGT-AACAAAACCAGTT--C-TTATCTATGAC---GTCATAA-TTGA--TATAAATTTCAAAA--TGACGTTTG-ATGTACA-TGT---GA-CAT-CA-TGGA--TGTCTCTTTG-GC--C-TATTATA---GGATCTTAGAGAAAGAAAACTGGAGTGAAAGAAACAAGGATAAT-AAATAAA----TCAAT-GATTAATAC---GAGTAAT-ACA-GTTC-TTT-AAA---CTTTAGACA-TTCAT-ACT-TT-TTCTG-CGA-TCTGA-G-GGCAGTAAag
gi|41 : tAAC-TGG-TACCCC-ATT-GAT-TGG--TGCT-ACAC-A-CAAA------ctgaggcctagcggctag
gi|42 : tGAGA--CACG---AGTC-A-A-CAG---GG-TACCAGTTTA-TACc
gi|5 : TAT-TTTTGTT-TG--AAAAAA--TGAAGCACAC-ATACGTGACCTA-CAACTTCTCAAAA---TTA-TAG--AATTG--GCTCA--AGAATATTTC-TTTTATGAG-AGG-CTA-TA-GAAAATACC-AAA--AAATGT----T-CA--CTTT--AAGGCTGA-TTT-T--AAAC-TGG-TCCCCC-ATT-GAT-TTG--TGCT-A-AA-A---AT------A-A---AGAGAGA--CAAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGC-TAAT-ATCAAA-CAACTTAT-TTCCCTTACT-GGAAC-TCTTTTAAGT-TAGAAA-TATA---T-TTTAGTGTA-G-GAAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTCTTTCTTTCTTAATTCAGT--AC--TTTGTTT-CTTAA-TCCATGGTGA-AAAGGATGAATTGTGAAT-AAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAAA--CTTCTT-G-CTGATTTGATAACAAGAAAATTTCAGTAGATCTACATTAT----TTTTATTTGCA-ATGAATAAG-----TG--------------TTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TGGAT----ATA---AA-CAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-TTTT--GCCCACAGTG---T-------A-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGG
gi|6 : ataattacaccctttttctccttatatttttaaaaaaaatgtctgaggaatgTCTTTAC-TTTTGTT-GG--AAAAA----GAAGCACAT-ATACTTGACCTAACAACTTCTCAAAAAGATTAATAACAAAT-GCGACTCA--AGAATATTTCCTTTTACAAG-AGG-C-AATG-AGAAATACA-AAA--AAA-ATAAAAT-CA--CTTT--GAGGATGA-TTT-T--AAAC-TGG-TCCCCA-TTT-GAT-TTG--TGCT-A-AA-AACAAA------G-AGAGAGAGAGA--CAAA---AGTC-A-A-CAA---G--TACCAGTTTAATGC-TGATTCTCAAAACAA-TTAT-TTCCCTTACT-GAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GCAAA-C-AACTTGTG-----------ACATGCAG-CATAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTT-TTAA-TTCAAGGTGA-AAAAGATGAATTGTAAATTAAAA-GT--CA--G---TGA-A--TTTGCACAA-TGAGCTTGCTTTATGATATTGACAAGCTTTTGG-CTGAAATTGGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCTGTAGATCTACATTAT----TTTTATGTGCA-ATGAATAAATTTTTTG-AT-AA-GAC--TTTTT-GCAGTTATGAAAAAAAAAAT-GTAACTAG---C-TTGAT----ATA---AA-CAACTTTGCCG-A
gi|7 : aacattttagggctgattttcagtaaaaattgcaaataattacccccttttctgcttgtattttaaaagaatgtggttgaggaattgTATGATCG-GTCA-AA-TTGAATTATGACTTTC--AAAATGACGTTTGAATGTACA-T-TGACGAACATCAAATGGA--TGTA-CTTTAAGC--TATACTGTATAGGGACCTTAAGAAAAGAAAACTGGAA-GAAAGAAACAAGGA-AATAAAATCAA----T-AA---ATTAATAC---GAGTATTAACATATTC-CTTATAAAACCTTTAGACATTTCATAACTGTTA-TCTG-CGATTCTGAGG-GGCAGTAt
gi|8 : CTTTAC-TTTTGTT-TG--AAAAAA---AAAGCACAT-ATACTTGACCTA-CATCTTCTCAAAA---TTA-AAG--AATGG--GCTCA--ATAATATTTC-TTTAATAAG-AGGCC-A-TA-G-AAATAC--------AA-ATAAATT-CA--CTTT--GAGGCTGA-TTT-TAGAAAC-TGG-TTCCCC-ATT-GAT-TTG--TGCT----A-A-CAAA----------------------------AGTC-A-A-CAG---GG-TACCAGTTTA-TG-TTGAT-CTCAAA-CAAGTTAT-GTCCCCTAC-TGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-ctgaggccttatgcggctagtccatttgaactagcctcccctccgggtcccaccccaatatacccagaaaatggtctattcataaagttattggcaaagaatcagtcaaaatttgatatgcacgtatcgaactgaacgtcaaaatgtgaagaaattgcaaaaacaaaaatccaacaaccaaccaactcgcttaaatacctatactagtatgacggatggcctgtacacacacccccctcttttaagtaagtgttaataagatacattttttgcatagatacatttatattcgattgtgtgcttatatcatgttgctaatggactgcgctataacaagtgtttttttatgcgatttaaagtgagaacaacacagataaatcagtggaaataattttgacatccttgtagtcttttagtctcctagttatgtgatttcgacacacctaattagcat
gi|9 : cactgataatcagtaaggaccaaacttttctggaaatgggatggttgatattctcctacaagtaattttttcttcaagtatatctatttaggattaaaataagtgttgtatatgaaaattatatacctagctgttgtcatggaaacaccagtcaaataaagcatatcatgaaaatttaggccccacaggaaaatagcccactggaaacatttctaaatgcactagatgtacacttcactttttaaaaaaacgttcggatgtatggggaatttttttaaaacatagatgtttaagattgtatcaaaaagaacatttaagggctaattttcagtaaaaatgacaaataattacccccctttctgcttgtattgtaaaaaaaagtcttgatgaattgTCTTT-C-GTTTGTT-TG--AAAAAAAATGAAGCACATTATACTTGGACCA-CAACTTC--AAAA---TTA-TAG--AAT-G--GCTCA--AGAA-ATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAACAAAA-AAAAA-T-CA--CTTT--GAGGCTGA--TT-T-TAAAC-TGG-CCCTCC-ATT-GA--TTG--TTCT-ATAA-A-CAAA------G-----AGAGAAA--CAAG---AG-C-A-A-CA----GG-TACCAGTTTA-T
blockSeqs : C A GT AAAT T A T AAA AT CA T CG CA T C . C C A A AC CA T AAAA T GC TC T A AG T ATA TA T . GC AAAAACAAAACTAATGAG AG ACA G C . CCT . A CC T T A G GCC TT T G . T A TAG . . A C . ACCCAAGTGTG A G T A T GG GA T T T A C A A CC ACA T T . T T C G G C . . . T TCTA TATA G C A AATA . T . ACA A AGT G TTTT ATT A G A G . A G GA C TTATTTTT T GTTT T C A G A . . G TCGA G G ATG T G T T TT T . A . ACC C AT AA AA C A C A AC T A CT GTATAG G T T A A TA TA . A T T A AAC T A G AT . T G .
blockSeqs : . . . AT . A A AGA T C G . . T . . . T . . A . . AAAT . . . T . T . ATA CA T . G ACACACAAACTCGAG . . G . . A . . C . A . G TT T . G . . A . . . . . . . . G C A T . . T T . T . A A . G . . . A T C G A T . . . . AGTA . G . T AT . T . AAA . . . AA . . . . . . . G . C CGTT . AT T T . . . . . . TCA . C T T . T . . . . A . CG . . . . . . C . . . . . GCA G T T A . TC TG . . T . . . T . . T . T . .
blockSeqs : . . . AT . . T . T . . . . T . . . . . . A . . AAA . . . T . T . TC A . . . AAAAACAAAGAGAGA . . . . . . . . C . T . C TT T . G . . A . . . . . . . . G C C T . . T T . T . G A . G . . . G T C G G C . . . . TGTA . T . T CT . T . . . . . . . . . . . . . . . T C . GT T T . . . . . . TC . A . T . T . . . . A . . . . . . . . . . . . . . TAG A . . A . T . . . . . . . . . . A . . . .
blockSeqs : . . . AT . . T . T . . . . T . . . . . . C . . AAA . . . T . T . TC A . . . TACAAGTGGGGTGA . . . . . . . . C . A . G TT T . G . . A . . . . . . . . . C A T . . . T . T . A . . G . . . G T T . G C . . . . TGA . T . T CA . . . . . . . . . . . . . . . . . C T . GT . T . . . . . . . . A . T . T . . . . G . . . . . . . . . . . . . . ATA .
blockSeqs : . . . A . . T . A . . . . . . . . . . . A . . AAA . . . T . T . TA G . . . TACAAGTGGGGTGA . . . . . . . . C . A . . TT T . G . . A . . . . . . . . . . . . . . . . . A . . . . G . . . G . . . . C . . . . AGT . G . . AT . . . . . . . . . . . . . . . . . C T . G . . . . . . . . . . A . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . T . . . . . . . . . . . A . . . . . . . . T . TA G . . . ACACGCAAACTTGA . . . . . . . . T . A . . GT T . . . . A . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . CA G . . . ACACACAAACGA . . . . . . . . . . T T . . . . . . . . . . . . . . . . . .
blockSeqs : . T . TA A . . . AAAAACAATGA . . . . . . . . . . . . . . .
blockSeqs : . . TA G . . . AAAAACAAAGA . . . . . . . . . . . . .
blockSeqs : . . TA G . . . AAAACAAAGAA . . . . . . . .
blockSeqs : . TA G . . . ATAAACAAAGA . . . . . . . .
blockSeqs : . TC A . . . AAAAATAAA . . . . . . . .
blockSeqs : . TC A . . . AACAAA . . . . . . .
blockSeqs : . TT A . . . ACAC . . . . . . .
blockSeqs : . CC T . . . . . . . . . . .
blockSeqs : . A A . . . . . . . . . .
blockSeqs : . . A . . . .
blockSeqCons : AT** T* AAA* T* TN* G* C* TT* G***** ** ** T** GT** **
originalCons : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA--AAA-ATAAA-T-CA--CTTT--GAGGCTGA-TTT-T-TAAAC-TGG-TACCCC-GTT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGCCTGAT-CTCNAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCANGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCNGTAGATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----ATA---AA-CAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA---T-------A-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
finalCons : TCTTTAC-TTTTGTT-TG--AAAAAAT--GAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTAT-AG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA--AAA-ATAAA-T-CA--CTTT--GAGGCTGAT-TT-T-TAAAC-TGGTN-CCCCG-TT-GAT-TTG--TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAG---AGTC-A-A-CAG---GG-TACCAGTTTA-TGC-TGAT-CTCNAA-CAAGTTATTT-CCCTTACTTGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCANGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CAG-----TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCNGTAGATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GACT--TTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----ATA---AA-CAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA---T-------A-TAGT--TTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACACTGATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTTGATATTCTCCTACAAATATTTTTGTCTTCAAGTATGCCTATAGACTCTATTCACGCGTCGGCCATAAAAATACGAAAACGAGGCTGCCTATTTAGTATTAAAATAAGTTGTATATACAAATTATATTCCTAGCTGTTGTCATGGAAACACCAGTCAAATAAAGCAAAACATGAAAATATAGGCCCCACAGGAAAATAGCCCACTGGAAACATTTCTAAATGCACTAGACATACACTTCACTATTTAAAAAAAAGTTTGGATGTATCGGGATTTTTTTTAAAAACTTAGATGTTTATTAAAGATTGTATAAAAAAGAACATTT
Unaligned ( gi|13 ): TTGTTGGAAATTGGGATGTTTGATATTCTCTTCAAAGAATTTTTCTTCAAGTATGCTATTTAGTATTAAAAATAAGTTGTCATATAAAAATTATATTCCTCAGCTGTTTGTCATGGAAACACCAGTCAAAGTAAAGCAAAACATGAAAAATATAGGCCCCACAGGAAAATGTCTGCACAGGAGACAATTTCTAATCAAGACATAACACTTCATTTTTAAAAATAAAAGTTGGATGTATGGGGATTTTTTTTAAAACTTAGATGTTTTAAGATGTATCAAAAAGAACAGTTTTTAAGGGCTGATTTCAGTAAAAATGCAAATACCGTACACCCCTTTTTCTTGCTTGTATTAAAAAAAGATTCTGAG
Unaligned ( gi|19 ): ACACTTCACTTTTTAAAAAAAAGTTCGGATATATGGGGATTGTTTTTTAAACCTAGATGTTTAAGATTGTATAAAAAAAGAACATTTTAGGGATGATTTTCAGTAAAAATGGCAAATAA
Unaligned ( gi|21 ): ACACTGATTATCTTTAAGGACCAAAATTTGCTGGAAACGGGATGTTTGATATTCTCCTACAAGTAATTTTTTTTCTTCAAGTATGCCTATTTAGTATTAAAATAAGTCGTATATAAA
Unaligned ( gi|22 ): TATTAGAATAAGTTGTATATAAAAATTATATTCATAGATGTCATGGAAACACCAATCAAATAAAGCAAACTTTGAAAATGTAGGCCCCACAGGAAAAGAGCCTACTG
Unaligned ( gi|23 ): AACACTGCTATATCTGTAAGCCAAATTGCTGGAAATTGGGAGTTTGATATTCTCCTTCAAGTAATTTTTTCTTCAAGTTAGCCTATTTAGTATTAAAATAAGTTGT
Unaligned ( gi|24 ): AACACTGATTATAAGGACCAAAATTTGCTGGAATTGGAATGTTTGATATTCTTCTACAAGTATTTTTTTCGCAAGTATGCCCATTTAGTAATTTAAAATAAGT
Unaligned ( gi|25 ): ATTTCTAAAAGCACTAGACATACACTTCACTTTTAAAAACATTCGGATGTATGGAGATTTTTTAAAAAAAAACTTAGATGTTTAAGATTGTATC
Unaligned ( gi|26 ): TGGCTCGAGAAATAGTGTTTTCACTACACTTGAAAATACAGATAGGATAAAACCGGTGATTCCGGAATATGGGCAATACTAACCTATA
Unaligned ( gi|33 ): GGCCTTAATAAAATTTAGTGAAATCGTTTATATAAATACTTGCAAATTCTTTTATCAGTCTT
Unaligned ( gi|39 ): TATATGTTGATGTGCTGTATGATATTTTATGTTTGCAAATAT
Unaligned ( gi|40 ): TGCGATTTAGAGAGCAGTAACTGAGGCCTAGCGGCTA
Alignments
lowQualScore : 1 1111 1 222 11 1 1 1111 11 4444444444444444444444444 1 22 22222222222 1 111111 11 1111 1111 111 111 1111 1 3333333 2222 3333 111 1 111 2 11 11 222222 1 333333 111 111 1 1 1 111 1 1 1 1 1
lowQualScore : 1 5 77 4444 5 1 1 000 77 33 1 77 77 5 5 5 5 0 5 5 55 66 5 6666 5 66 66 2 5 4 44 7 1 44 4 2 2 2222222222222222222222222 33 444 4 2 2 666 2 5 4 4 5 1 5 1 666 44 5 5 5 5 3 888 5 5 5 5 5 77777777777 8888 1 3 1 99 99 7 7 6 1 6 3 5 77 000000 5 33 5 3 5 9 2 1 1 6 77 5 5 0 3 1 2222 6 5 1 1 2222 5 666 5 777 4 777 4 4444 99999 4 5 5 5 5 3 99 1 3333333 6 1111 3 5 6 6 6 6 6 6 3333 6 5 888 3 6 3 6 99 6 0 5 0 77 555 5 77 77 77 8 8 0 8 11 8 8 11 0 222222 3 3 3 3 0 666666 333 777 0 3 0 0 777 3 0 0 66 0 3 0 0
lowQualScore : . . .. .... . . . ... .. .. . .. .. . . . . . . . .. .. . .... . .. .. . . . .. . . .. . . . ......................... .. ... . . . ... . . . . . . . . ... .. . . . . . ... . . . . . ........... .... . . . .. .. . . . . . . . .. ...... . .. . . . . . . . . .. . . . . . .... . . . . .... . ... . ... . ... . .... ..... . . . . . . .. . ....... . .... . . . . . . . . .... . . ... . . . . .. . . . . .. ... . .. .. .. . . . . .. . . .. . ...... . . . . . ...... ... ... . . . . ... . . . .. . . . .
lowQualScore : 4 7 99 3333 7 4 7 000 44 66 4 99 99 0 7 7 7 0 0 0 11 99 0 4444 0 99 99 5 0 4 55 1 8 77 7 4 4 9999999999999999999999999 11 111 4 2 2 111 2 7 0 0 7 0 0 9 000 99 0 6 0 0 2 888 0 7 7 7 7 11111111111 6666 0 5 7 22 22 3 3 7 0 7 6 4 99 111111 7 66 7 0 0 3 5 0 0 7 99 7 7 7 0 4 1111 6 7 7 4 6666 7 333 7 555 4 000 0 0000 33333 4 7 7 7 7 3 22 0 3333333 7 5555 2 7 7 7 7 7 7 7 8888 7 7 333 2 7 2 7 22 7 8 0 6 99 666 0 99 99 99 0 0 0 0 00 0 0 00 8 222222 2 2 2 2 0 000000 555 555 0 2 0 0 555 2 0 0 55 0 2 0 0
consensus : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA--AAA-ATAAA-T-CA--CTTT--GAGGCTGA-TTT-T-TAAACTGG-TNCCCC-GTT-GAT-TTG-TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAGA---GTC-A-A-CAG---GG-TACCAGTTTA-TG-C-TGAT-CTCNAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCANGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCNGTAGATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
Reference ( family-664 ) : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGCACAT-ATACTTGACCTA-CAACTTCTCAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAA--AAA-ATAAA-T-CA--CTTT--GAGGCTGA-TTT-T-TAAACTGG-TNCCCC-GTT-GAT-TTG-TGCT-A-AA-A-CAAA------G-A---AGAGAGA--CGAGA---GTC-A-A-CAG---GG-TACCAGTTTA-TG-C-TGAT-CTCNAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GTAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTTCTTAA-TTCANGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCNGTAGATCTACATTAT----TTTTATNTGCA-ATGAATAAGTTTTTTG-NT-AA-GAC--TTTTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTC--TCATT-ATATGTACAATATTTT---TCAATTCAATTAGATA-ATATG-TGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CATCCA-TGGA--TGTA-CTTTA-GC--TATATTGTA--GGGATCTTAGAGAAAGAAAACTGGAATGAAAGAAACAAGGATAAT-AAATAAA----T-AAT-GATTAATAC---GAGTATT-ACATGTTC-TTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|1 : TACGTTTTGTT-TG--AAAAA---TGAAGCACAT-ATG------------ATTTCTCAAA----TTA--AG--AAT-G--GGCTA--GAAATATTTC-TTTTATAAGTAGG-T-A-TG-GAAAATATA-AAA--AAG-ATA---------CTTT--GAGGTTGAATTT-T-GAAACGGG-TCCCC----T-GATATTG-TGCTTA-AA-A-CAAA------G-A----GAGAGA---AAGA---GTC-A-AACAG---GGATTCCAGTTTA-TGGC-TGAT-CTCTAA-CAAGTTAT-T-CCCTTACT-GAAAC-TTTTTC---TGTAGAAC-C-CA---TGTTTAG-GTATG-GTAAA-CCAACTTGTG-----------ACATGCAG----AAGACACTCTCTAATA-TTTGTTTTTAAATTAACTC-GT--A---TTTGTTT-CTTAA-TTCAAGGTGA-AAAGGATGAATTGTAA-TTAAA--GT--CA--GAAGTGG-AATTTTGCATAAGTGAA-TTGC-TTATGATATTGG-AAGCTTTTGGGCTGAA-TTATATTCTTGTTTG-CTGGTTTGATAACAAGAACATTCAGGTAGAT-TACATTAT----TTTTATTTGCA-ATGAATAGGTTTTTTG-CT-AAGGACAGTTTTTGGCAGTT-TG---AAAGAAGT-GTAACTAG---C-TTGAT----AT-A---AACAG-TTTGCCG-ATCACTAAAT-ATT-GAATCTTC-AGGCAG-TTTT--G-CCACAATA-------TA-CA-----------CGTAT-AG-AT-AAGGGCATTAAGGGGCTTAC-ACT----TCATT-GTATGT-TAATATTTT---TT-TTTCATTGAGATA-GGAT-------AAT--ACTA--ATGATTCTAATAATCGGAGT-AACAAAACCAGTTGCTTTTAGCTATGA----GTCATAA-TTGA--TATGAC-TTC--AA--T
gi|10 : actgattaatctgtaacgaagccacatttgctggaaatgggatgtttgatatctccttaaaggtagatttttttttcaagttgcgatttagtattaagaataagagtgtaatataataaatttaatcctagctgttgtaatggaaactacagtcaaacaaagcaaaacataaaatagcccccaaggaaaatagcaaatggaaacattatgctagaagaatgcactaatagcatacactgactttttaaaaaaaaaagttcggatggtatgggaattttttttataaaagttagatgttttacagattgtagtcaaaaaagaaacattttagagtcattttcagtgaagataagcaaaataattacaccctttttctgcctgtactttaaaaaaaatgtcggaggaatttgGAAACAAGGATA-T-AAATAAAATCAC-AATTGATTAATACCTTGAGTATT-ACATGTTC-TTA-TAA---CTTTATACATTTCAT-ACT-TTATTCTGTCGATTTTGA-GAGGCAGGAA
gi|11 : TGTAAATTAAAA-GT--CA--G---TGA-A--TTTGCATTA-TTAGCTTGctgagccttagggcggtattccagtttttgaactacgccatacccatgggtcccagcccataatacccatgggatggtctatgtcaataaaattatttggcaaaaaatctatatgaaaaaattttgatatgcacgtatcgaactgaaacgtcaaattgaaaatgctattataaacaaaatcacaacaaaccaactcgctaaatacctggctatactagtatacggatggctgtaacaacccccccctcctcttttaagtaagtggttaaaataagcatataatttttcatagtacagtatatgtgattttagctattactcattcctaatgatggcgcatcgaataaaagtgtggatacacacagaataaatcattgaaaatatttttacatcttgtgtttagtcccttagaaatgtgatttgacacctaattaac
gi|11 : ATTAG---CTTGTT-G-CTGGTTTCATAACAAGAAAATATCTCTACATCTACATTAT----TTTTATGTGCA-ATGAGTACGATTTT-G-AT-AA-GAC--TTTCT-GCAGTTATG---AAAGAAAT-ATAACTAG---C-TTGAT----AT-A---AACAGCTTTGCCG-AACACAACAT-ATT-GAA-CTTC-AGGCAA-GTTT--GCCCACAATA-------CA-TAA--TTTTT-GTCCTAT-GC-AT-AG-GATATT-AGGGGCTTAC-ACTTC----ATT-ATATGTGCAATATTTT---TCAATTAATTTACATA-ATATG-TGAAAAAG--ACCA-CACGATTCTAAAGA-CGGAGTAAAGAAAACCAGTT--CTCTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAttgctggtttcataacaagaaaatatctctacatctacattatttttatgtgcaatgagtacgattttgataagactttctgcagttatgaaagaaatataactagcttgatataaacagctttgccgaacacaacatattgaacttcaggcaagtttgcccacaatacataatttttgtcctatgcataggatattaggggcttacacttcattatatgtgcaatatttttcaattaatttacataatatgtgaaaaagaccacacgattctaaagacggagtaaagaaaaccagttctctagctatgacgtcataattgatatgactttcaatgacgtttga
gi|14 : tgtaaattaaaagtcagtgaatttgcattTAACTAGAGTCGTTGAT----A------AACCACTTTGCCGGACCACAACAT-ATTGGAA-CTTCAAGGCAAGGTTTGAGCCCAAGATACGT----TA-TAGTTTTTTTTGTC-TATAGCGATAAA-GGC----AGTGGCTTAC-ACT----TCATT-TTATGTCGAATATGTTATGTCAATCTAAT--GATAGATATGTTGATACAGTTGTCATCATGTTGCTAATGA-CTGAGT
gi|15 : AAT-GTAACTAG---C-TTGAT----AT-A---AACAACTTTGCCG-A
gi|15 : CGATTCTAAAGA-CGGGGTAAACAAAACCAGTT--CTTTAGCTATGAC---GTCATAA-TTGA--TATGACTTTC--AA--TGACGTTTGAATGTACA-TGTGACGA-CAT-CA-TGGA--TGTA-CTTTA-GC--TATATT-CA--GAGATCTTAGAGAAAGAAAACTGGAATGAAAGAttctaaagacggggtaaacaaaaccagttctttagctatgacgtcataattgatatgactttcaatgacgtttgaatgtacatgtgacgacatcatggatgtactttagctatattcagagatcttagagaaagaaaactggaatgaaaga
gi|16 : aatgtaactagcttgatataaacaactttgcCGATTCTAAAGA-CGGA---AACAAA-CCA--T--CTTTACCTATTACACCGTCATAACTTGA--TATGACTTTC--AA--TAACGTC--AAT-TACACTGTGACGA-CATCCA-TGCAACTAAA-CTTTA-GCCTCATAATGCA---GAATCTTAGA-AAAGAAA
gi|17 : gataaataaacaaacccgtccTAC-ATTTCA-TC-TT-ATATGTACAATATTTTT--TCAATTCAATTAGATA-ATATG-CGAAAAAG--ACTA-CACGATTCTAATGA-CGGAGTAAACAAAACCAGTG--TTTTAGCTATGAC---GTCATAA-T
gi|18 : TT-T-TAAACTTG-ACCCCT-ATT-GAT-TTG-TGCT-A-AA-AACAAT------G-A----GAGAGA--CAAGA---ATC-A-T-C-G---GG-TACCAGTTTA-TG-C-TGAT-CTATAA-CAAGTTAT-TTCCCTTAC-TGAAAC-TCTTTTAAGT-agggcgagaaagtttcgaagttac
gi|2 : aaTCTTTACCTTTTGTTATGGTAAAAAA--TGAA-CACAT-A-ACTTGACCTAACAACTTCTCAAAAAAATTA-TACC-AAT-G--ACTCACAAGAA-ATATC-TTATACAAG-ATG-C-A-AAAGAAAATACA-AAA--AAA-ATAAA-T-CAGCCTTTTCGAG-CTGA-TTT-T--AAACTTTCTCCCCC-ATG-TAA-TTG-TGCT-A-AA-AACAAAACTAATG-A---GAAGAAA--CAAGACAAGTC-ACA-AAA---AC-TACCAGTTTA-TG-C-TGAT-CCAAAA-CAA-TTATGCCCCCTTAC-TGAAACTTCTTTTAA---TAGAAATCACATAGT-TCTAGT-TA-G-GCAAACC-AACTT--------------ACATGCAG-CATAA-ACACTCC---ATAC--TG---CTTAATTAA-TCAGT--AC--TTTG-TTTCTTAATTTCAAGGTGACAAAAAATGAATT---AATT--AAAGTCCCAACA---TGATA--TTTGCACAA-T-AGC-TGC--TAT-ATATT-ACATACTTTTGG-CTGAAATTTGA--CT--TT-GTCTCCTTTGATAACAA-AAAATTTCTG-AAATCTACATTATTATATTTTATGTGCACATAAATAAATTATCTGAATAAA-GAC----TTT-GCAGTTATGACAAAAAAAATAATGACTAG---C-TTGATAA--AT-A---AACaattatcagttaattttattt
gi|20 : ccactgatatatcttaaggacccaaaaaaattttgctggaaacggtagtttgatactcactacatcagttacattttgttttcttcaagtaggcctaactagtattaaaatacatcctatataaaaataacttctcctagctcgttgtcagctggaaacaccagtcaaataaagcaaaatacataaagatagacccgacagaaaatagcccactgaacacatttcttaacaaccataaacaatcatacaccttcacttctttaaaaaaaagtcacattatgggaattttttttctaaatcattaacaccatatggttaacttcgcctttttgaatgtttaacagataaaaagaacaattttagcgatttcacagtaaaaagtccgcccaacaataaacccccttcttgctatttaacaagaattgtgaaaatt-A-TA-GAAAATACA-AAA--AAA-GT----T-CA--CTTT--GAGGCTGA-TTT-T-TAA-CTGG-TCCCCC-ATT-GAT-TTG-TGCTAA-AA-A-CAAA------G-----AGAGAGA--
gi|27 : gacattttttttatttctggtataactgtgttaaa-TAAACTGG-TACCCC-GTT-GAT-TTGGTACT-A-CACA-CAAACTC---G-A---GAAAAG---CGAGA---GCC-A-A-CAG---GG-TATCAGTTTA-t
gi|28 : cAACTGGATACCTC-GTTTGAT-TGG-TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAGA---GTCGA-A-CAG---GT-TACCAGTTTa
gi|29 : AACTGGATACCTC-GTTTGAT-TGG-TGCTTACAA-G-TGGG------GTG---AGAGAAA--CGAGA---GTCGA-A-CAG---GT-TACCAGTTT
gi|3 : TCTTTAC-TTTTGTT-TG--AAAAAA--TGAAGGACAT-ATACTTGACCTA-CAACTTCACAAAA---TTA-TAG--AAT-G--GCTCA--AGAATATTTC-TTTTATAAG-AGG-CCA-TA-GAAAATACACAAA--AAA-AAAAA-TTCA--CTTT--GAG-TTGA-TTTAT-TAAACTGG---CCCC-ATT-GAT-TTG-TGTT-A-AA-A-CAAA------G-A---AGAGAGA--CAAGA---GTC-A-A-CAG---GG-TACCAGTTTA-TG-CCTGAT-CTCTAA-CAAGTTAT-TTCCCTTACTTGAAAC-TCTTTTAAGT-TAAAAA-C-CA---T-TTTAGTGTA-G-GTAAA-C-AACT-GTG-----------ACATGCAGAC---AGACACTCTTAAGTACTTTGTTTCTT-ATT-ATTCAGTGGACGATTTGTTTTCTTAA-TTCATGGTGA-AAAGGATGAATTGTAAATTAAAAAGT--CA--G---TGA-A--TTTGCATAA-TAAGCTTGCCTTATGATATTGATAAGGTTTTGG-GTGAAATTAGA--CTTGTT-G-CTGGTTTGATAATA-------------AGATCTATATTAT----TTTTATTTGCC-TTGAATAAGTTTTTTG-CT-AA-GAC--TTTTT-GCAGTTATA---GAAGAAAT-GTAACTAG---C-TTGAT----ATAA---AACAGCTTTGCCG-ACCACAACAC-ATT-GAA-CTTC-AGGCAA-GTTT--GTCCACAATATTATTTTTA-TAG---TTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGGCTTAC-ACTTCGATCATT-ATATGTACAATATTTT---TCAATTCAATTAGCTA-ATATG-TGAAAAAG--ACTA-CATGATTGTAATGA-CGGAGTGAACAAAACCAGTG--CTTGAGGTATGAC---GCTATAA-ATGA--TATGACTTGA--AA--TGGCGATTGACGGTACA-GGTGACGA-CAT-GA-TGGA--TGTA-CTTTA-GC--TATATT-TA--GGGATCTTAGAGAAAGAAAACTTGAATGAAAGAAACAAGGATAAT-AAATAAA----TAAAT-AATTAATAG---GAGTATT-ACATATTCTTTT-TAA---CTTTAGACATTTCAT-ACT-TTATTCTG-CGATTCTGA-G-GGCAGTAA
gi|30 : AACTGG-TACCCCCATT-GAT-TGG-TGCT-A-CACG-CAAACTT---G-A----GAGAAG--CGAGA---GCC-A-A-CAG---GA-TACCAGTTTA-
gi|31 : tAACTGG-CACCCT-GTT-GAT-TGT-TGCT-A-CACA-CAAA------C-G---AGATAGAAGTGAGA---GCC-A-A-CAG---GG-TACCAGTTT
gi|32 : CAGTTATG---AGAGAAAT-GTAACTAG---C-TTGATTTTTAT-------TAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-
gi|34 : AACTGA-TACCCC-GTT-GAT-TTG-TGCT------A-C-----------A---CGAGAAG--CGAG----GTC-A-A-CAGA--GG-TACCAGTTTA-
gi|35 : C-A-A-CGG---GG-TACCACTTTA-CG-C-T
gi|36 : ctccgtgaACTGG-TACCCC-ACT-GAT-TGG-TGCT---------------------------------CGAGA---GGC-A-A-CAG---GG-TACCAGTttggctgctacaccaa
gi|37 : AGAAA-CACA---G-TTTAATGTA-A-GTAAA-C-AACTTGTG-----------ACATGCAG-CAG
gi|38 : ---AGAGAAG--TGAGA---GCC-A-A-CAGCCTGG-TACCAGTTTA-T
gi|4 : actcgAA-CAA--TAT-T-CCCTTACT-GAAAC--CTTTTAA-T-TAGAAA-CACA---T-TC--ATGTA-GAGTAAA-C-AACTTGTGACCCAAGTGTGACATGCAG-CAGAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTG-TTTCTTAA-TTCATGGTGA-AAAAGATGAATTGT-AATTAAAA--T--CA--G---TGA-AT-TTTGCATAA-TGAGC-TGCCTT----TATTAACAACTTTTTGG-CTGAAATTAGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCAGT-GAACTACATTAT----TTTAAT-TGCA-ATGAATAAG-TTTTTG-CA-AA-GAC---TTTT-GCAGTTA--------------GTAACTAG---C-TTGAT----AT-AATTAACAGC-TTGCCG-ACCACAACATAATT-GAA-CTTC-AGGCAAGGTTT--GCCCACAATA-------TATTAG---TATTTGTCTTAT-GC-AT-AG-GGCATT-AGGGGCTTACGACT----TCATTGATATGTACAA-ATATT---TCAATTCAATTAGATA-A-ATG-TGAAAAAG--ACTA-CATGATTCTAATGA-CGGAGT-AACAAAACCAGTT--C-TTATCTATGAC---GTCATAA-TTGA--TATAAATTTCAAAA--TGACGTTTG-ATGTACA-TGT---GA-CAT-CA-TGGA--TGTCTCTTTG-GC--C-TATTATA---GGATCTTAGAGAAAGAAAACTGGAGTGAAAGAAACAAGGATAAT-AAATAAA----TCAAT-GATTAATAC---GAGTAAT-ACA-GTTC-TTT-AAA---CTTTAGACA-TTCAT-ACT-TT-TTCTG-CGA-TCTGA-G-GGCAGTAAag
gi|41 : tAACTGG-TACCCC-ATT-GAT-TGG-TGCT-ACAC-A-CAAA------ctgaggcctagcggctag
gi|42 : tGAGA--CACGA---GTC-A-A-CAG---GG-TACCAGTTTA-TA-C-c
gi|5 : TAT-TTTTGTT-TG--AAAAAA--TGAAGCACAC-ATACGTGACCTA-CAACTTCTCAAAA---TTA-TAG--AATTG--GCTCA--AGAATATTTC-TTTTATGAG-AGG-CTA-TA-GAAAATACC-AAA--AAATGT----T-CA--CTTT--AAGGCTGA-TTT-T--AAACTGG-TCCCCC-ATT-GAT-TTG-TGCT-A-AA-A---AT------A-A---AGAGAGA--CAAGA---GTC-A-A-CAG---GG-TACCAGTTTA-TG-C-TAAT-ATCAAA-CAACTTAT-TTCCCTTACT-GGAAC-TCTTTTAAGT-TAGAAA-TATA---T-TTTAGTGTA-G-GAAAA-C-AACTTGTG-----------ACATGCAG-CAGAAGACACTCTCTAGTACTTTCTTTCTTTCTTAATTCAGT--AC--TTTGTTT-CTTAA-TCCATGGTGA-AAAGGATGAATTGTGAAT-AAAAAGT--CA--G---TGA-A--TTTGCATAA-TGAGCTTGCCTTATGATATTGACAAGCTTTTGG-CTGAAATTAAA--CTTCTT-G-CTGATTTGATAACAAGAAAATTTCAGTAGATCTACATTAT----TTTTATTTGCA-ATGAATAAGT-------------G------TTT-GCAGTTATG---AAAGAAAT-GTAACTAG---C-TGGAT----AT-A---AACAGCTTTGCCG-ACCACAACAT-ATT-GAA-CTTC-AGGCAA-TTTT--GCCCACAGTG-------TA-TAG--TTTTTTGTCTTAT-GC-AT-AA-GGCATT-AGGGG
gi|6 : ataattacaccctttttctccttatatttttaaaaaaaatgtctgaggaatgTCTTTAC-TTTTGTT-GG--AAAAA----GAAGCACAT-ATACTTGACCTAACAACTTCTCAAAAAGATTAATAACAAAT-GCGACTCA--AGAATATTTCCTTTTACAAG-AGG-C-AATG-AGAAATACA-AAA--AAA-ATAAAAT-CA--CTTT--GAGGATGA-TTT-T--AAACTGG-TCCCCA-TTT-GAT-TTG-TGCT-A-AA-AACAAA------G-AGAGAGAGAGA--CAAAA---GTC-A-A-CAA---G--TACCAGTTTAATG-C-TGATTCTCAAAACAA-TTAT-TTCCCTTACT-GAAAC-TCTTTTAAGT-TAGAAA-CACA---T-TTTAGTGTA-G-GCAAA-C-AACTTGTG-----------ACATGCAG-CATAAGACACTCTCTAGTACTTTGTTTCTTAATTAATTCAGT--AC--TTTGTTTT-TTAA-TTCAAGGTGA-AAAAGATGAATTGTAAATTAAAA-GT--CA--G---TGA-A--TTTGCACAA-TGAGCTTGCTTTATGATATTGACAAGCTTTTGG-CTGAAATTGGA--CTTGTT-G-CTGGTTTGATAACAAGAAAATTTCTGTAGATCTACATTAT----TTTTATGTGCA-ATGAATAAATTTTTTG-AT-AA-GAC--TTTTT-GCAGTTATGAAAAAAAAAAT-GTAACTAG---C-TTGAT----AT-A---AACAACTTTGCCG-A
gi|7 : aacattttagggctgattttcagtaaaaattgcaaataattacccccttttctgcttgtattttaaaagaatgtggttgaggaattgTATGATCG-GTCA-AA-TTGAATTATGACTTTC--AAAATGACGTTTGAATGTACA-T-TGACGAACATCAAATGGA--TGTA-CTTTAAGC--TATACTGTATAGGGACCTTAAGAAAAGAAAACTGGAA-GAAAGAAACAAGGA-AATAAAATCAA----T-AA---ATTAATAC---GAGTATTAACATATTC-CTTATAAAACCTTTAGACATTTCATAACTGTTA-TCTG-CGATTCTGAGG-GGCAGTAt
gi|8 : CTTTAC-TTTTGTT-TG--AAAAAA---AAAGCACAT-ATACTTGACCTA-CATCTTCTCAAAA---TTA-AAG--AATGG--GCTCA--ATAATATTTC-TTTAATAAG-AGGCC-A-TA-G-AAATAC--------AA-ATAAATT-CA--CTTT--GAGGCTGA-TTT-TAGAAACTGG-TTCCCC-ATT-GAT-TTG-TGCT----A-A-CAAA-------------------------A---GTC-A-A-CAG---GG-TACCAGTTTA-TG-T-TGAT-CTCAAA-CAAGTTAT-GTCCCCTAC-TGAAAC-TCTTTTAAGT-TAGAAA-CACA---T-ctgaggccttatgcggctagtccatttgaactagcctcccctccgggtcccaccccaatatacccagaaaatggtctattcataaagttattggcaaagaatcagtcaaaatttgatatgcacgtatcgaactgaacgtcaaaatgtgaagaaattgcaaaaacaaaaatccaacaaccaaccaactcgcttaaatacctatactagtatgacggatggcctgtacacacacccccctcttttaagtaagtgttaataagatacattttttgcatagatacatttatattcgattgtgtgcttatatcatgttgctaatggactgcgctataacaagtgtttttttatgcgatttaaagtgagaacaacacagataaatcagtggaaataattttgacatccttgtagtcttttagtctcctagttatgtgatttcgacacacctaattagcat
gi|9 : cactgataatcagtaaggaccaaacttttctggaaatgggatggttgatattctcctacaagtaattttttcttcaagtatatctatttaggattaaaataagtgttgtatatgaaaattatatacctagctgttgtcatggaaacaccagtcaaataaagcatatcatgaaaatttaggccccacaggaaaatagcccactggaaacatttctaaatgcactagatgtacacttcactttttaaaaaaacgttcggatgtatggggaatttttttaaaacatagatgtttaagattgtatcaaaaagaacatttaagggctaattttcagtaaaaatgacaaataattacccccctttctgcttgtattgtaaaaaaaagtcttgatgaattgTCTTT-C-GTTTGTT-TG--AAAAAAAATGAAGCACATTATACTTGGACCA-CAACTTC--AAAA---TTA-TAG--AAT-G--GCTCA--AGAA-ATTTC-TTTTATAAG-AGG-C-A-TA-GAAAATACA-AAACAAAA-AAAAA-T-CA--CTTT--GAGGCTGA--TT-T-TAAACTGG-CCCTCC-ATT-GA--TTG-TTCT-ATAA-A-CAAA------G-----AGAGAAA--CAAGA---G-C-A-A-CA----GG-TACCAGTTTATTG-C-T
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACACTGATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTTGATATTCTCCTACAAATATTTTTGTCTTCAAGTATGCCTATAGACTCTATTCACGCGTCGGCCATAAAAATACGAAAACGAGGCTGCCTATTTAGTATTAAAATAAGTTGTATATACAAATTATATTCCTAGCTGTTGTCATGGAAACACCAGTCAAATAAAGCAAAACATGAAAATATAGGCCCCACAGGAAAATAGCCCACTGGAAACATTTCTAAATGCACTAGACATACACTTCACTATTTAAAAAAAAGTTTGGATGTATCGGGATTTTTTTTAAAAACTTAGATGTTTATTAAAGATTGTATAAAAAAGAACATTT
Unaligned ( gi|13 ): TTGTTGGAAATTGGGATGTTTGATATTCTCTTCAAAGAATTTTTCTTCAAGTATGCTATTTAGTATTAAAAATAAGTTGTCATATAAAAATTATATTCCTCAGCTGTTTGTCATGGAAACACCAGTCAAAGTAAAGCAAAACATGAAAAATATAGGCCCCACAGGAAAATGTCTGCACAGGAGACAATTTCTAATCAAGACATAACACTTCATTTTTAAAAATAAAAGTTGGATGTATGGGGATTTTTTTTAAAACTTAGATGTTTTAAGATGTATCAAAAAGAACAGTTTTTAAGGGCTGATTTCAGTAAAAATGCAAATACCGTACACCCCTTTTTCTTGCTTGTATTAAAAAAAGATTCTGAG
Unaligned ( gi|19 ): ACACTTCACTTTTTAAAAAAAAGTTCGGATATATGGGGATTGTTTTTTAAACCTAGATGTTTAAGATTGTATAAAAAAAGAACATTTTAGGGATGATTTTCAGTAAAAATGGCAAATAA
Unaligned ( gi|21 ): ACACTGATTATCTTTAAGGACCAAAATTTGCTGGAAACGGGATGTTTGATATTCTCCTACAAGTAATTTTTTTTCTTCAAGTATGCCTATTTAGTATTAAAATAAGTCGTATATAAA
Unaligned ( gi|22 ): TATTAGAATAAGTTGTATATAAAAATTATATTCATAGATGTCATGGAAACACCAATCAAATAAAGCAAACTTTGAAAATGTAGGCCCCACAGGAAAAGAGCCTACTG
Unaligned ( gi|23 ): AACACTGCTATATCTGTAAGCCAAATTGCTGGAAATTGGGAGTTTGATATTCTCCTTCAAGTAATTTTTTCTTCAAGTTAGCCTATTTAGTATTAAAATAAGTTGT
Unaligned ( gi|24 ): AACACTGATTATAAGGACCAAAATTTGCTGGAATTGGAATGTTTGATATTCTTCTACAAGTATTTTTTTCGCAAGTATGCCCATTTAGTAATTTAAAATAAGT
Unaligned ( gi|25 ): ATTTCTAAAAGCACTAGACATACACTTCACTTTTAAAAACATTCGGATGTATGGAGATTTTTTAAAAAAAAACTTAGATGTTTAAGATTGTATC
Unaligned ( gi|26 ): TGGCTCGAGAAATAGTGTTTTCACTACACTTGAAAATACAGATAGGATAAAACCGGTGATTCCGGAATATGGGCAATACTAACCTATA
Unaligned ( gi|33 ): GGCCTTAATAAAATTTAGTGAAATCGTTTATATAAATACTTGCAAATTCTTTTATCAGTCTT
Unaligned ( gi|39 ): TATATGTTGATGTGCTGTATGATATTTTATGTTTGCAAATAT
Unaligned ( gi|40 ): TGCGATTTAGAGAGCAGTAACTGAGGCCTAGCGGCTA