lowQualScore : 11111111111111111111111111111 11111111111111111111111111111111111111 1111111111111111
lowQualScore : 1 1 11 11 44444444444 11 444444444 1 22222 44444444 333333333333 55555555555 11 111 00000000000000000000000000000 1 1 1 555555555555 1 11 11 11 44444444 222 333 11 4444 1 2222 33333333333333333333333333333333333333 33333 1 555555555 222 5555555555555555555555555 11111 1111 111 22222222222222222 11111 6666666666666666666666 11 111 111 4444444444444 55555555555555555555555555555555555555 1 5555555555555555555555555555555555 1 55555555555555555555555555555555555555555555555555 33 1 1 22222222 1 1 1 1 1 33333333333333333 11 666666666666666666 11111111111111 11 22 11111111 1 22 1 1 11 88888888888888 22222222 111 44444444444444444444444444 9999999999999999999999999999999999999999 22222222 22222 4444444444444 1 1111111111111111 2222 111 111 2222 222222222 2 111111 11111 111111 11111 333333333333333333333333 111111 11111 11111111
lowQualScore : 2 6 0 8 8 11 11 55555555555 7 88 7 888888888 3 3 77777 6 88888888 666666666666 0 66666666666 9 33 4 777 33333333333333333333333333333 0 0 0 333333333333 0 0 3 33 33 2 33 00000000 333 7 222 22 4444 3 5555 22222222222222222222222222222222222222 7 777 77777 3 333333333 88 333 6666666666666666666666666 44444 5 2222 5 000 77 77 11111111111111111 8888 33333 5 5555555555555555555555 66 77 5 44 5 000 000 1111111111111 8 77 99999999999999999999999999999999999999 0 4444444444444444444444444444444444 3 99 0 2 99999999999999999999999999999999999999999999999999 11 3 1 3 7 55555555 3 3 3 3 3 3 44444444444444444 1 99 888888888888888888 77777777777777 3 6 00 7 22 7 33333333 3 6 2 0 33 5 0 33 3 00000000000000 3 55555555 2 3 333 77777777777777777777777777 2222222222222222222222222222222222222222 99999999 0 22222 0 8 6 0 66 8 0 9 3 7777777777777 3 0 5555555555555555 3 1111 0 2 3 777 444 6666 999999999 8 4 3 2 666666 66666 000000 00000 0 0 222222222222222222222222 2 1 666666 66 11111 66666666
lowQualScore : . . . . . .. .. ........... . .. . ......... . . ..... . ........ ............ . ........... . .. . ... ............................. . . . ............ . . . .. .. . .. ........ ... . ... .. .... . .... ...................................... . ... ..... . ......... .. ... ......................... ..... . .... . ... .. .. ................. .... ..... . ...................... .. .. . .. . ... ... ............. . .. ...................................... . .................................. . .. . . .................................................. .. . . . . ........ . . . . . . ................. . .. .................. .............. . . .. . .. . ........ . . . . .. . . .. . .............. . ........ . . ... .......................... ........................................ ........ . ..... . . . . .. . . . . ............. . . ................ . .... . . . ... ... .... ......... . . . . ...... ..... ...... ..... . . ........................ . . ...... .. ..... ........
lowQualScore : 0 7 6 0 0 00 00 00000000000 3 33 3 000000000 7 3 77777 7 33333333 777777777777 7 00000000000 8 88 0 555 00000000000000000000000000000 0 0 0 888888888888 8 0 2 88 88 5 88 22222222 333 3 333 00 0000 3 0000 55555555555555555555555555555555555555 3 333 77777 3 333333333 33 333 5555555555555555555555555 33333 7 4444 7 000 44 99 00000000000000000 0000 11111 7 5555555555555555555555 11 44 7 66 7 222 000 8888888888888 0 00 77777777777777777777777777777777777777 0 8888888888888888888888888888888888 2 00 0 5 00000000000000000000000000000000000000000000000000 77 3 0 3 3 77777777 3 3 3 3 3 7 33333333333333333 0 33 333333333333333333 00000000000000 7 7 33 3 77 3 00000000 3 7 5 2 88 5 0 88 2 00000000000000 5 22222222 5 5 555 44444444444444444444444444 2222222222222222222222222222222222222222 00000000 8 00000 8 0 0 6 66 0 6 6 2 5555555555555 2 5 0000000000000000 2 2222 2 5 2 555 000 8888 888888888 0 0 8 2 888888 22222 555555 11111 7 8 222222222222222222222222 6 7 000000 11 11111 11111111
consensus : NTGGTTTGAACTTGTACAGTCAAGACTGCCGTAGCGGACCCACTGTATTAAGCGACTCA-CTGTC-AT--AT--GTGACCA--AACAAT--CCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTNTA-TTAA-A---CGACCAC--------CTGTCTGACGCGAA--CC-AACN-ACCGT------GAC--TTTTCGCGACCATTTCGTG--TANT---TTC-----------T--------TG-NA---TTT-TACCTTTA-TTCA-GCGACCGTA-----TAT-TTTCCGATTACA-ACGCGATCCCTA--CTT--TCNATT--TCGATTTC-AAGAGCGTGGTTAATCTA---AGAGTTATC-GCCCCTNAC----ACTTTCGTTTT-GAACGCGCACGCA-TTAACGTATCTGAATGGTAGTGTNATTCTGTATGTTGGTCGATTTGTTGGCATTNTNAA--TT-AGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGT-TTGAAACAA-CG-GCTTT-GTT-NTC-CAA--GGTG-T-GA------------ATTTCGACCG-AGTTTGAGAAT-----TGT-G-GGGTAG--AT-----------AG-GT-GTGAAAAC-CT-GG-TGA-CC-CATTG----TATTC-CNT-----ACAATGGAAAATTAACCT-GACT----GTGACG----CAANATNAGTTTAANACTGTGCTTGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATACG-CGA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCAC-GAAT-AAT-TTTA-AAAGTGTAGANAT----GACC--GG-----ACTAGCAGTTCACTTCAACATAC-A-AT-------GT-ATTACGAGTTGTTGACACATCCAAGCT-AAGAAAGCCGCC-GCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATT-TTGTA-TAAATGGAGAAGCAACACCTCATTACTTTCTTT--CTATCATGAG-AGG--TACTGTAAGTT-----------TANAATTACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATATAA--------TTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGATTTT-AAATATTATTAATTTTGTCTTAC--T-G--------TTAAACCTATACTTGATATTCT-GGCAATGAATTCCAAATGCATGG----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCA-TTTGCTAAAAGCCTTCACTCC--AA--AAA-A--GGCGACCTGTAT------TAAGAGAC-CACCTGTCATATGTGACCTTTTT------TCA--------A-----GTCTCCNATGGAAGG--T---CTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
Reference ( gi|3 ) : TTGGTTTGAACTTATACAGTCAAAACTGCCATAGCGGACCCACTGTATTAAGCGACTCA-CTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATAT----ATT--TTACCTGTA-TTAA-A---CGACCAC--------CTGTCTGACGCGAA--CC-AACGGACCGT------GA---TTTTTGCAACCATTTCGTG--TATT---TTC-----------T--------TG-TA---TTT-TACCTTTA-TTCA-GCGACCATA-----TA--TTTCCGATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAAAGAGCGTGGTTAATCTA---AGAGTTATC-TGCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTA-ATAA-GT-T-----TGAT-GTGTG--TCTG----------AATTTGTTGGCATTCTAAAACTTTAGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTT-ATC-CAA--GGTG-T-GA------------ATTTCGACTG-AGTTTGAGAAT-----TAT-A-GGGT-G--AT-----------AG-GTGGTGAAAAC-CT-GG-TGA-CC-CATTA----TATTC-CCT-----ACAATGGAAAATTAACCT-GACT----GTGACG----CAAAATTAGATAAAGACTGTGCATGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CAA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCAC-GAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTTCACTTCAACATACAAAAT-------GT-ATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAG-AGA--TACTGTAA--------------TAAAATTACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATATAA--------TTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGATTTT-AAACATTATCAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGAT--------CA------TCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCA-TT-GCTGAAAGCTTTCACTCC--AA--AAA-A--GGTGACCTGTAT------TAAGAGAC-CACCTGTCATATGTGACCTTTTT------TCA--------A-----GTCTCCAATGGAAGG--T---CTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|2 : TGGTTTGAACTTATACAGTCAAAACTGCCATAGCGACCCCACTGTATTAAGCGACTCA-CTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTTTAT----ATT--TTACCTGTA-TTAA-A---CGACCAC--------CTGTCTGACGCG-A--CC-AAACGACCGT------GAT--TTTTTGCAACCATTTCGTG--TATT---TTC-----------T--------TGATA----TT-TACCTTTA-TTCA-GCGACCATA-----TAT-TTTCCGATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTC-AAGAGCGTGGTTAATCTA---AGAGTTATC-GCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTATATAACGTATCTGAATGATAGTGTT--TCTGTATGTTGGTCGATTTGTTGGCATTCTAAA--CTTAGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTCTGTGTGG--A-GTCCAT---CC-GA--TA--A---A--CCC-----GAGTTGTTGT-T--TG--TT-TAAC--AAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTT-ATC-CAA--GGTG-T-GA------------ATTTCGACTG-AGTTTGAGAAA-----TAT-A-GGGTAG--AT-----------AG-GTGGTAAAAAC-CT-GG-TGA-CC-CATTA----TATTC-CCT-----ACAATGGAAAATTAACCT-GACT----GTGACG----CAAAATTAGATAAAGACTGTGCATGGG--ACTG--TAAAACTTAGAAAATACTGGATTATATG-CAACCTTTCCT---GAA-CGAGATG-TCGTAAGTTTCAC-GAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTT-ACTTCAACATACAAAAT-------GT-ATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTA-TTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAG-AGA--TACTGTAA--------------TAAAATTACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATGTTTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATATAA--------TTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGATTTT-AAACATTATCAATTTTGTCTTAC--T-G--------TT-AACCCATACTTGAT--------CA------TCCCAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCATTT-GCTGAAAGCTTTCACTCC---A--AAA-A--GGTGACCTGTAT------TAAGAGAC-CACCTGTCATATGTGACCTTTTT------TCA--------A-----GTCTCCAATGGAAGGGTC---CTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|7 : TTGTACAGTCAAGACTGCCGTAGCG-ACCCACTGTATTAAGAGACTCA-CTGTC-AT--AT--GTAACC--------------CCAG-G--TGTTACTCTATATCT--GTT--GTACCTATA-TTGA-A---CAACCAC--------CTGTCTTACGCGA---CC-AACT-ACCAT------GA---TTTTCACGACCTTTTCGTG--TAAT---TTCATTAAAATTCAT--------TA-AA---TTT-TACCTCTA-AACA-ACGACT------------TTGTCGATTACA-ATGCGATTCTTA--CTT--TCGATT--TCGATC-----GAGTTTGACAATTCTG---AGAGTTATCGTACCC-GAC----ACTTTCGTTTTAAAACGCATATGCA-TTA
gi|1 : ATAGGCGACC---TGTATTAAGAGAC-CACCTGTC-AT--AT--GTGACC
gi|1 : tatgagcgactcactgtttaccaattcgtgaccaaacaatcccccaaagttcgtcctatattcacgttgtttacttttggttaacatttcgacacaatctatactatctgagcccaattccgaacgaccatatgttggacattttctgcaacctttcgtagttattcaattctgagtaatatgtgtttatccttttgcttccgcgaccataataattattccagattacagacgcgatccctatacttattccattgttcgattggcgtggttaatctatgcagagtttcgccccttacactttcgttttgaacgcgcacgattaagtttggtggtgattctgattgtggcatttgtaaacttaggatttttaccattatcggacaaacatgtagtaatgtaggacaaagagcttcagaaggtcgtgtggcgaatcataccccagataatacactcctcctcgtgttgctatatagtgaattataactagaatcatgatgagatttctagctgtattgaaacaaatgtgctccagttatccaaagggtgtgatttcgactgatttgggaatctcattagggggtagaataggatgtgaaaactctcggctgaaccacattgagcttattcacctacaatggaaaattaaccttgactcagtgtgaggatgccaaactcagtttagaaagacttagaaacactggattatttgacgacctcctgatgaaatgatcggtagtttcaccgagtgaatctttgtaaagtgtagtaatttaagaccaaggactagcagtcactttcagatattatatttcacgagttattacgagttgttgacacatccaatctaaactgtgtacaatgaatatcatggtttatttaatgtctttcaatgatttgaataaatttccagtataaatggagaagcaacacttcattactttctttctatcatgagaggtactgtaataaaattacaagtatacacatgtaaatagtctttacaatagaataaataaataagaggttaaatataaaaaaaaaatttcaattatgaaacaacatattatattttagatttttaaacattattaattttgtcttactgttaaacctatacttgatcatccaaatgcatgatcattttctcctttgaggctgcattcttgtatataccatttgctaaaagttttcactccaaaaaTGAGCGACTCA-CTGTTTACCAATTCGTGACCA--AACAAT--CCCCCAAAGTTCGT---CCTATATTCACGTTGTTTACTTTTGGTTAACATTTCGAC-ACAATCTATACTATCTGAGCCCAATTCCGAACG-ACCATATGTTGGACATTTTCTGCAACC-TTTCGTAGTTATTCAATTC-----------TGAGTAATATG-TG---TTTATCCTTTTGCTTCC-GCGACCATAATAATTA--TTCCAGATTACAGACGCGATCCCTATACTTATTCCATTGTTCGATT------GGCGTGGTTAATCTATGCAGAGTT-TC-GCCCCTTAC----ACTTTCGTTTT-GAACGCGCACG-A-TTAA-GT-T-----TGGT-G-GTGATTCTG----------A--TTGT-GGCATTTGTAAACTT-AGGATTTTTACCATTATCGGACAAAC-AT---GTAGTAATGTAGGACAAAG-----------AGCTTCAGAAGGTC-GTGTGGCGA-AT-CATACCCCAGA--TA--ATACA-CTCCTCCTCGTGTTGCTATATAGTGAATTATAACTAGAATCATGATGAGATTTCTAGCTGTATTGAAACAAATGTGCTCCAGTT-ATC-CAAAGGGTG-T-GA-------------TTTCGACTG-A-TTTGGGAATCTCATTAG-G-GGGT-AGAAT-----------AG-GATGTGAAAACTCTCGGCTGAACCACATTGAGCTTATTCACCT-----ACAATGGAAAATTAACCTTGACTCAGTGTGAGGATGCCAAACTCAGTTTA-------------------GA--AAGACTTAGAAAC-ACTGGATTATTTGACGA-CCT-CCT---GA--TGAAATGATCGGTAGTTTCACCGAGTGAATCTTTGTAAAGTGTAGTAATTTAAGACCAAGG-----ACTAGCAGT-CACTTTCAGATATTATATTTCACGAGTTATTACGAGTTGTTGACACATCCAATCT-------------------------AAACTGTGTACAATGAATATCATGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAG--------TA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAG-AGG--TACTGTAA--------------TAAAATTACAAGTAT-A--CACATGTAAATAGTCTTTACAATAGAATA-------------------A--------ATAAATAAGA----------GGT-------------T---------A--AATATAAAAAAAAAATTT-------CAATTATGAAAC-AACATATTATATTTTAGATTTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCTATACTTGAT--------CA------TCCAAATGCATGA----TCATTTTCTCCTTTG---AGGCTGCATTC--TTGTAT---------ATACCA-TTTGCTAAAAGTTTTCACTCC--AA--AAA-ATAGGCGACCTGTAT------TAAGAGAC-CACCTGTCATATGTGACCTTTTT------TCA--------A-----GTTTCCAATGGAAAG--T---CTCT--TA-----ATA--------CAGGTTTGACTGTAttttttcaagtttccaatggaaagtctcttaatacaggtttgactgtatc
gi|11 : taTAGGCGAC----CTGTC-AT--AT--GTGACCtc
gi|5 : ttataccatttgctaaaagcattcactccaaaaaACTTCATG--TAAT---TTCCA---------T--------TG-AAAGGTGT-TACCTTTA-TTCAGGCGACTGTAC----TATTTTTTCGAATACA-ACGCG-TTTCTA--CTT--TCGCTT--TGG---TCAAAttttttcaagtctccaatggaaggtctcttaatacaggtttgactg
gi|4 : aTTTGTTAGCTTTATGAA--TCGAGGGTTTT-ACC---------CAAGCTATCAAATAAT---------GAACACATGTTAAAGTTGC-----AGGGTC-GTTTGG--G-GT-GAA---AA-AA--TA--A---A-AAAC-----GAGTTATTG------G------AAC-AAGA---------GA-----------------------G-ATTTT-TTT-CTC-AAA--GGTA-TGGG------------ATTTAACCTATAGTTT-AAAATG----TGC-G-GAGTAG--AT-----------GGAGT-GTGAAATT-CT-AC-T-A-CC---TTG----TTTTT-CGTGATGCACAAAAGTAAA-CAAATT-GCCT----G-GTCG------ACATGAGTTTAATATTGTGCTTGAA--AATAA-TGAAGCTTAGAAA--ACTGAATTATACG-CGA-CTTTCATGTAGAATTAAGGTG-TCCTACGTTTCTA-GAAT-TAT-TTCA-AAGGTGTAGATAT----ACCC--GGTGAGTACTACCAGTTTACTTCAACA----------------T-ATTCCGCGTAGTTGACACATCCAAGTTCAAGAAAGTTGCCAGCATTAATTCAAAA-TCTACACAATGAATCT-----TTCATT--------TTTAAA-------AATACTTTTCCATCATTATTATAGGAAAAGGA-AAGCAACACCTCATCGCTCTATTTTACTATCA-GAGAAGAATTGTTGTGGGTTGTTTTTTTTTTTACAATTGCACGTAT-A------TGTATATTTTCTTTACAATGAATTG-TTT-TATGTTCCGTAGTCA----TCTCAAAAATAAGATTATGAAACTGAT-------------T---------A--AATGTAA--------TTTTTG--ATCAGTCAT-AAACAAACGCATTGTATTATACATTTT-AACTATTACTGATTTTATTTAAC--A-GCTCTAAATCTAAAACTATGTTTGATATTCTAAGCAATGAATTCCAAATGCA--G----TAATTTTCTCCAT------AAC--AATTAC-ATGTATTTCTCTATCACACCA-TT---TGCA--CCTTCACTGCGGAA--AAT-A--GACAACCTGAGT------TAAGAGTC-CACATGTCAAATGTGACTTTTTA------TTATACTCTACA-----TTCTCCAATAGACGG--C---CTCA--TA-----TTA--------AAGGATTGACTATtgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacaggcatgcaggttcagtggaagttaattaacgtacacattaatgttgtttttaataaaatcaaggatccagctcatgaaacgatgtggtttcaaagtggtgaattttgacaaagtttgactgtgcgggtagatcaggtcacgccaggtgtgaaaatctaccacctatgtcagaagagtggaaaattagtaatattgcaatgtaacacagtgcttgggatactgactaaaatttgcccattgcacgtccaaggcttcgt
gi|13 : gtAGCG-----------TAC-----AGGGTC-ATGTGG--A-GT-CAT---CC-CA--TATAA---A-CCCA-----GAGTTGTTGT-T--TG--AT-TAAC-AAAATCAGG----GATC------TG---TGAAACAA-TG-GCTTG-GTT-TTC-tt
gi|14 : gGTG-----------TGC-----AGGGTT-GTATGG--AAGT-CGT---CC-CA--TA--A---A-TCCA-----CAGTTGTTGT-T--TG--TT-TAAC-AAAATC----------C----------TTGAAACAA-CG-GCTTT-GTT-TCC-CAA--GGTga
gi|5 : GCA-----------TGC-----AGGTTC-A-GTGG--AAGT-TAA---TT-AACGTA--C---A-CATT-----AA--TGTTGT-T--T----T-TAAT-AAAATCAAG----GATCC--A--GCTCATGAAACGA-TG-----T-GGT--TT-CAA--AGTGGT-GA------------ATTTTGACAA-AGTTTG---AC-----TGT-GCGGGTAG--ATCAGGTCACGCCAG-GT-GTGAAAAT-CT------A-CC-ACCTA----TG-TC-AGA-----AGAGTGGAAAATTAG--T-AA-T----AT--TG----CAATGT------AACACAGTGCTTGGGATACTGACTAAAATTTtt
gi|17 : aacttcatgtaatttccattgaaaggtgttacctttattcaggcgactgtactattttttcgaatacaacgcgtttctactttcgctttggtcaaatgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacagG-----------TGC-----AGGGTC-GTGTGG--A-AT-CAT---CC-GA--TA--A---ACCCCC-----GAGTTGCTGT-T--TG--TT-TAAC-AAAATCATG----GAgcccattgcacgtccaaggcttcgt
gi|7 : AAACAA-CG-ACTTT-GTCGATTACAA----TG-C-GATTCTTACTTTCGATTTCGATCG-AGTTTGACAAT-----TCTGA-GAGT-T--AT-----------
gi|6 : ttgtacagtcaagactgccgtagcgacccactgtattaagagactcactgtcatatgtaaccccaggtgttactctatatctgttgtacctatattgaacaaccacctgtcttacgcgaccaactaccatgattttcacgaccttttcgtgtaatttcattaaaattcattaaattttacctctCACCT-ACTACTTTTTTTA-CCAACA-GAG-AAG--CATTG-AAGTTT----------TCTATTTACAAATACGATACAATT-----TATGTTTTAGAA---AAT---TTACATG---------CAGACATTTCATAAATACG------------GT-------------TCTTAAACTGAGTAATGTAA--------CTTTT---------TATGAA-------TAATAGATTTGAGATTTT-AACTATTAT---TCTT-TTTTACAATAG--------TTACACC-ATACTTGATATTCTTGATAATGAATTCTAGATATTTGGATATTTATTTTCTC-ATTGTACAAAC--TATTTCTGTATATT--------ACAGTA-TTTGCTAAAGGCCTTTATTTT--AGTTAAT-C--GGTATCTTGTATGCCTATTAATAGAC--ACCTGTCATATGTGACCCCCCCCCCCCACCA--------A-----TTTTCCATTAGGCGG--T---CTCC--CA-----ATA--------CAGGTTTGACTCTACcgtacccgacactttcgttttaaaacgcatatgcatta
gi|12 : atttTGCATG---------CA----TTTCATAAATAAGA----------ATTAATTAAATCTATAT---------A--AATACAA--------TTTTTGTTATGAACTATGAAAC-AATATA----ATT----ATTTT-AAATATTATTAATTTTGTCactgtaatca
gi|11 : TT--------ATACCA-TTTGCTAAAAGCATTCACTCC--AA--AAATA--GGCGACC------------------------TGTCATATGTGACCTTTTT------TCA--------A-----GTCTCCAATGGAAGG--T---CTCT--TA-----ATA--------CAGGTTTGACTG
gi|2 : ACCTGTAT------TAAGAGGA-C-CCTTCCATTGGAGAC-----T------TGA--------AAAAAGGTCACATATGACAGG--TGGTCTCT--TA-----ATA--------CAGGT
gi|1 : tggtttgaacttatacagtcaaaactgccatagcgaccccactgtattaagcgactcactgtcacatgtgaccataaacaattccccccaaagcgttaccctttatattttacctgtattaaacgaccacctgtctgacgcgaccaaacgaccgtgattttttgcaaccatttcgtgtattttcttgatatttacctttattcagcgaccatatattttccgattacaacgcgatccctactttccatttcgatttcaagagcgtggttaatctaagagttatcgcccctaactgtgactttcgttttgaacgcgcacgtatataacgtatctgaatgatagtgtttctgtatgttggtcgatttgttggcattctaaacttaggattttacccaaattatgtaatcagcgtgcagggtctgtgtggagtccatccgataaacccgagttgttgtttgtttaacaaatcatggatcatgtattgaaacaacggctttgttatccaaggtgtgaatttcgactgagtttgagaaatatagggtagataggtggtaaaaacctggtgacccattatattccctacaatggaaaattaacctgactgtgacgcaaaattagataaagactgtgcatgggactgtaaaacttagaaaatactggattatatgcaacctttcctgaacgagatgtcgtaagtttcacgaataattttaaaagtgtagacatgaccggactagtagttacttcaacatacaaaatgtattacgagttgttgacacatccaagctaaagaaagccgcctgcattagttcaaaactgtgtacaatgaatatcgtggtttatttaatgtctttcaatgatttgaataaatttccagcatttttgtataaatggagaagcaacacttcattactttctttctatcatgagagatactgtaataaaattacaagtatatgcacgtgtaaatattctttacaatataatgttttgcatgcatttcataaataagaggttaaatataatttttgttatcaattatgaaacaacatattatattttagattttaaacattatcaattttgtcttactgttaacccatacttgatcatcccaatacatgatcattttctccattgagaccatttagtgtattataccatttgctgaaagctttcactccaaaaaggtgACCTGTAT------TAAGAGAC-T---TTCCAT-TGGAAACTTG----------A--------AAAAAGGTCACATATGACAGG--TGGTCTCT--TA-----ATA--------CAGGTttgactgtactttat
gi|11 : tatgagcgactcactgtttaccaattcgtgaccaaacaatcccccaaagttcgtcctatattcacgttgtttacttttggttaacatttcgacacaatctatactatctgagcccaattccgaacgaccatatgttggacattttctgcaacctttcgtagttattcaattctgagtaatatgtgtttatccttttgcttccgcgaccataataattattccagattacagacgcgatccctatacttattccattgttcgattggcgtggttaatctatgcagagtttcgccccttacactttcgttttgaacgcgcacgattaagtttggtggtgattctgattgtggcatttgtaaacttaggatttttaccattatcggacaaacatgtagtaatgtaggacaaagagcttcagaaggtcgtgtggcgaatcataccccagataatacactcctcctcgtgttgctatatagtgaattataactagaatcatgatgagatttctagctgtattgaaacaaatgtgctccagttatccaaagggtgtgatttcgactgatttgggaatctcattagggggtagaataggatgtgaaaactctcggctgaaccacattgagcttattcacctacaatggaaaattaaccttgactcagtgtgaggatgccaaactcagtttagaaagacttagaaacactggattatttgacgacctcctgatgaaatgatcggtagtttcaccgagtgaatctttgtaaagtgtagtaatttaagaccaaggactagcagtcactttcagatattatatttcacgagttattacgagttgttgacacatccaatctaaactgtgtacaatgaatatcatggtttatttaatgtctttcaatgatttgaataaatttccagtataaatggagaagcaacacttcattactttctttctatcatgagaggtactgtaataaaattacaagtatacacatgtaaatagtctttacaatagaataaataaataagaggttaaatataaaaaaaaaatttcaattatgaaacaacatattatattttagatttttaaacattattaattttgtcttactgttaaacctatacttgatcatccaaatgcatgatcattttctcctttgaggctgcattcttgtatataccatttgctaaaagttttcactccaaaaaataggcgACCTGTAT------TAAGAGAC-Cttgactgtatc
gi|7 : ttataccatttgctaaaagcattcactccaaaaataggcgacctgtcatatgtgaccttttttcaagtctccaatggaaCTGTAT------TAAGAGACTCA-CTGTCATATGTAACCttgactg
gi|15 : ttgtacagtcaagactgccgtagcgacccaAT------TAAGAGAC-CACATGTCATAT-TTACCTTTTT------TCC--------A-----TTCTTCTATGGACGG--T---GTCA--TA-----ATACATGCATGCAGGTTTGACTGTACccaggtgttactctatatctgttgtacctatattgaacaaccacctgtcttacgcgaccaactaccatgattttcacgaccttttcgtgtaatttcattaaaattcattaaattttacctctaaacaacgactttgtcgattacaatgcgattcttactttcgatttcgatcgagtttgacaattctgagagttatcgtacccgacactttcgttttaaaacgcatatgcatta
gi|16 : AT------TAAGAGAC-CAC-TGTCATATTT-ACCTTTTT------TCC--------A-----TTCTTCTATGGACGG--T----TCTAATACATGCATG--------CAGGTTTGACTGTACaa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): GTTCAGAGGAGTGGATAATTAGTCCCATTGAAATGTACACAGTGCTTGGGATTGAATAGAATTTGACATTGACACTCAAATGGCTTCGTACATGGTAATTTGGCAGTCATAATTTTTTTGATGTTGAAATTTTGAAATGACAGGAGATTTTAACTTTTAGCGGGAGGGACGGGAGGGAGTCTCAAAATCAGGAGATTTTATCTCCCGCCGGGAGAATCACATGTATG
Unaligned ( gi|9 ): AGAATGTCTTTTGTTGTGAATTTTGAAATGACAAGAGCTTTGACTTTTAGCAGAAGGATGAGCAGGGGGGGGGGGGGGGGGGGGACTCAAAATTGGGAATTACTATCTCCTGGCCGGACAAGAATCATGCATTATGA
Unaligned ( gi|10 ): TTTTTTTGCTGTTGAATATTTGAAAAAATGACGGGCACAGATTTTAAAACTTTTAGCCGGGAGGGACTGGAGAGGCGGTCTCAAAATCAGGAGATTTTATCTTCCGCCGCGGAGAATCACTATGTATG
Unaligned ( gi|18 ): TCTCCCGCCGGGAGAATCACATGTATGA
Alignments
lowQualScore : 1111111111111111
lowQualScore : 1 22222 33333333333 11 3333 11 1 11111 1 2222222 222 1 11 3333333333 11 11 111 777777777777777777777777777 2222 11 11 11 33333 111 4444 1 1 1 9999999999999999999999999999999999999 11 333 1 1 444444444 111 444444444 22222222222 11111 1 11111 111 555555555555555555555 11 22222 33333333333 1 22222222 22222 222222222 222222222222222 111 11 22 1 1 111 11 1 1 1 1 1 2222 11 22222 1 444444444444444444444 3 3 1 2222222 1 11 1 111 66666666666666 11 111 333333333333333 666666666666666666666666666666666666666 22222222 111 3333333333333 0000000000000000 1111 111 11 22222222 111111 11 111111 111111 11111111 11111 11111111
lowQualScore : 0 0 0 2 55555 99999999999 3 33 3 9999 33 1 0 88888 0 5555555 333 0 11 0000000000 66 2 6 11 1 444 000000000000000000000000000 8 8 8 8 77 3333 8 5 8 8 0 11 11 1 11 44444 777 3 0 1 2222 0 0 0 5555555555555555555555555555555555555 11 1 777 0 0 000000000 3 777 000000000 33333333333 22222 5 66 0 5 888 55 66 999999 66 22222 5 66 000 5 5 33 444444444444444444444 66 5 5 1 99 3 4 11 88 88888 8 0 8 88888888888 8 8 6 8 22222222 8 33333 8 000000000 0 0 8 0 333333333333333 1 222 1 1 44 1 6 11 999 33 2 0 0 3 777 33 0 0 0 0 0 1 1111 33 55555 99 0 999999999999999999999 0 2 00 0 0 2 22 0 3 3 6666666 0 2 99 0 444 0 88888888888888 8 1 8 33 3 1 0 3 666 5 000000000000000 888888888888888888888888888888888888888 44444444 222 6 3 3 6 1 4444444444444 0 6 5555555555555555 0 7777 0 444 11 0 8 44444444 2 111111 55 999999 5 444444 88888888 2 1 3 66 66 22222 88888888
lowQualScore : . . . . ..... ........... . .. . .... .. . . ..... . ....... ... . .. .......... .. . . .. . ... ........................... . . . . .. .... . . . . . .. .. . .. ..... ... . . . .... . . . ..................................... .. . ... . . ......... . ... ......... ........... ..... . .. . . ... .. .. ...... .. ..... . .. ... . . .. ..................... .. . . . .. . . .. .. ..... . . . ........... . . . . ........ . ..... . ......... . . . . ............... . ... . . .. . . .. ... .. . . . . ... .. . . . . . . .... .. ..... .. . ..................... . . .. . . . .. . . . ....... . . .. . ... . .............. . . . .. . . . . ... . ............... ....................................... ........ ... . . . . . ............. . . ................ . .... . ... .. . . ........ . ...... .. ...... . ...... ........ . . . .. .. ..... ........
lowQualScore : 7 7 7 0 00000 55555555555 2 88 2 2222 88 0 0 55555 0 0000000 000 0 00 2222222222 55 0 0 00 0 000 000000000000000000000000000 0 0 0 0 88 6666 0 6 0 0 8 00 00 0 00 00000 555 2 2 0 5555 0 5 0 3333333333333333333333333333333333333 00 0 555 0 0 000000000 2 555 000000000 88888888888 55555 0 99 0 0 888 22 99 666666 44 55555 0 99 222 0 0 44 666666666666666666666 11 7 7 0 22 8 6 00 88 00000 0 8 0 00000000000 0 0 0 0 00000000 0 44444 0 222222222 8 8 0 6 888888888888888 0 000 4 4 66 0 2 00 666 88 0 0 0 2 555 22 0 0 0 0 0 0 2222 88 00000 88 0 555555555555555555555 0 5 55 0 2 5 88 0 2 2 0000000 0 5 00 6 000 8 88888888888888 0 0 0 88 2 0 8 8 888 2 000000000000000 333333333333333333333333333333333333333 22222222 777 7 5 5 7 0 2222222222222 8 8 2222222222222222 8 0000 8 000 00 8 0 22222222 2 000000 88 222222 6 444444 11111111 5 0 0 99 99 55555 11111111
consensus : NTGGTTTGAACTTATACAGTCAAAACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-----ACATGTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACG-ACCGT------GAT-TTTTC-GCAACCATTTCGTG--TATT---TTC-----------T--------TGNA---T-TT-TACCTTTA-TTCA-GCGACCGTA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAT-TAA-GTGTCTGA-TGGTGGTGT--TTCTG---GTTG---GATTTGTTGGCATTC-TAAAC--TT-AGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTAT--TGAAACAA-CG-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACCGA--GTTTGAGAAT-----TATG-GGGTAGA-T-----------AG-G-TGGTGAAAAC-CT-GG-TGA-CC-CATTG----TAT-TC-CCT-----ACAATGGAAAATTAACCT-GACT----GTGACG----CAAAAT--CAGTTTAANACTGTGCNTGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CGA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCAC-GAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGCAGTTCACTT-CA------ACAT---ACAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTA-TTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTT-TTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTT-AAAATTACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGATATTCT---CAATGAATTCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCTTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------ANTCTCCAATGGACGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
Reference ( family-655 ) : NTGGTTTGAACTTGTACAGTCAAGACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-----ATATGTGACCA--AACAAT--CCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTNTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACN-ACCGT------GAC-TTTTC-GCGACCATTTCGTG--TANT---TTC-----------T--------TGNA---T-TT-TACCTTTA-TTCA-GCGACCGTA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCNATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTNAC----ACTTTCGTTTT-GAACGCGCACGCAT-TAACGTATCTGAATGGTAGTGTNATTCTGTATGTTGGTCGATTTGTTGGCATTN-TNAA---TT-AGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGT-T--TGAAACAA-CG-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACCGA--GTTTGAGAAT-----TGTG-GGGTAGA-T-----------AG-G-T-GTGAAAAC-CT-GG-TGA-CC-CATTG----TAT-TC-CNT-----ACAATGGAAAATTAACCT-GACT----GTGACG----CAANAT--NAGTTTAANACTGTGCTTGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATACG-CGA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCAC-GAAT-AAT-TTTA-AAAGTGTAGANAT----GACC--GG-----ACTAGCAGTTCACTT-CA------ACAT---AC--AATGTATTACGAGTTGTTGACACATCCAAGCT-AAGAAAGCCGCC-GCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTA-TTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCA-TT-TTGTA-TAAATGGAGAAGCAACACCTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTT-ANAATTACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAATATTATTAATTTTGTCTTAC--T-G--------TTAAACCTATACTTGATATTCT-GGCAATGAATTCCAAATGCATGG----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCCTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTCTCCNATGGAAGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|1 : TGAGCGACTCACTGTTTACCAATTCGTGACCA--AACAAT--CCCCCAAAGTTCGT---CCTATATTCACGTTGTTTACTTTTGGTTAACATTTCGACACAATCTATACTATCTGAGCCCAATTCCGAACG-ACCATATGTTGGACATTTTCTGCAACC-TTTCGTAGTTATTCAATTC-----------TGAGTAATATGTG---T-TTATCCTTTTGCTTCC-GCGACCATAATAATTATTCCAGATTACAGACGCGATCCCTATACTTATTCCATTGTTCGATT------GGCGTGGTTAATCTATGCAGAGTT-TCGCCCCTTAC----ACTTTCGTTTT-GAACGCGCACG-AT-TAA-GT---T---TGGTGGTG--ATTCTG---ATTG----------TGGCATTTGTAAAC--TT-AGGATTTTTACCATTATCGGACAAAC-AT---GTAGTAATGTAGGACAAAG-----------AGCTTCAGAAGGTC-GTGTGGCGA-AT-CATACCCCAGA--TA--ATACA-CTCCTCCTCGTGTTGCTATATAGTGAATTATAACTAGAATCATGATGAGATTTCTAGCTGTAT--TGAAACAAATGTGCTCCAGTTATCCAAAGGGTGTGA-TTTCGACTGA---TTTGGGAATCTCATTAGG-GGGTAGAAT-----------AG-GAT-GTGAAAACTCTCGGCTGAACCACATTGAGCTTAT-TCACCT-----ACAATGGAAAATTAACCTTGACTCAGTGTGAGGATGCCAAACT--CAGTTTA-------------------GA--AAGACTTAGAAAC-ACTGGATTATTTGACGA-CCT-CCT---GA--TGAAATGATCGGTAGTTTCACCGAGTGAATCTTTGTAAAGTGTAGTAATTTAAGACCAAGG-----ACTAGCAGT-CACTTTCAGATATTATATTTCAC--GAGTTATTACGAGTTGTTGACACATCCAATCT-AA------------------------ACTGTGTACAATGAATATCATGGTTTA-TTTAATGTCTTTCAATGATTTGAATAAATTTCCA---------GTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAA--------------T-AAAATTACAAGTAT-A--CACATGTAAATAGTCTTTACAATAGAATA------A---------------------ATAAATAAGA----------GGT-------------T---------A--AATATAAAAAAAAAATT-------TCAATTATGAAAC-AACATATTATATTTTAGATTTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCTATACTTGAT--------CA------TCCAAATGCATGA----TCATTTTCTCCTTTG---AGGCTGCA-TTC-TTGTA-T--------ATACCATTTGCTAAAAGTTTTCACTCC--AA--AAAATAGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTTTCCAATGGAAAG--TCTCT--TA-----ATA--------CAGGTTTGACTGTA
gi|11 : taTT--------ATACCATTTGCTAAAAGCATTCACTCC--AA--AAAT-AGGCGACCT-----------------------GTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGG--TCTCT--TA-----ATA--------CAGGTTTGACTGtc
gi|12 : TGCATG---------CA----TTTCATAAATAAGA----------ATTAATTAAATCTATAT---------A--AATAC--------AATTTTTGTTATGAACTATGAAAC-AATATA----ATT----A-TTTTAAATATTATTAATTTTGTC
gi|13 : AGCG-----------TAC-----AGGGTC-ATGTGG--A-GT-CAT---CC-CA--TATAA---A-CCCA-----GAGTTGTTGT-T--TG--AT-TAAC-AAAATCAGG----GATC------TG-----TGAAACAA-TG-GCTTG-GTTTTC
gi|14 : gGTG-----------TGC-----AGGGTT-GTATGG--AAGT-CGT---CC-CA--TA--A---A-TCCA-----CAGTTGTTGT-T--TG--TT-TAAC-AAAATC-------------------C-T--TGAAACAA-CG-GCTTT-GTTTCCCAA--GGTga
gi|15 : ATTAAGAGACCACATGTCATAT-TTACCTTTTT------TCC--------ATTCTTCTATGGACGG--TGTCA--TA-----ATACATGCATGCAGGTTTGACTGTACtt
gi|16 : ATTAAGAGACCAC-TGTCATATTT-ACCTTTTT------TCC--------ATTCTTCTATGGACGG--T-TCTAATACATGCATG--------CAGGTTTGACTGTACaa
gi|17 : G-----------TGC-----AGGGTC-GTGTGG--A-AT-CAT---CC-GA--TA--A---ACCCCC-----GAGTTGCTGT-T--TG--TT-TAAC-AAAATCATG----GAaa
gi|2 : TGGTTTGAACTTATACAGTCAAAACTGCCATAGCGACCCCACTGTATTAAGCGACTCACTGTC-----ACATGTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTTTAT----ATT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAC--CA-AACG-ACCGT------GAT-TTTTT-GCAACCATTTCGTG--TATT---TTC-----------T--------TG-A---TATT-TACCTTTA-TTCA-GCGACCATA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTATATAACGTATCTGAATGATAGTGT--TTCTGTATGTTGGTCGATTTGTTGGCATTC-TAAAC--TT-AGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTCTGTGTGG--A-GTCCAT---CC-GA--TA--A---A--CCC-----GAGTTGTTGT-T--TG--TT-TAAC--AAATCATG----GATC---A--TGTAT--TGAAACAA-CG-GCTTT-GTTATCCAA--GGTGTGAATTTCGACTGA--GTTTGAGAAA-----TATA-GGGTAGA-T-----------AG-G-TGGTAAAAAC-CT-GG-TGA-CC-CATTA----TAT-TC-CCT-----ACAATGGAAAATTAACCT-GACT----GTGACG----CAAAAT--TAGATAAAGACTGTGCATGGG--ACTG--TAAAACTTAGAAAATACTGGATTATATG-CAACCTTTCCT---GAA-CGAGATG-TCGTAAGTTTCAC-GAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTT-ACTT-CA------ACAT---ACAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTA-TTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTT-TTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGA---TACTGTAA--------------T-AAAATTACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATGTTTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATCAATTTTGTCTTAC--T-G--------TT-AACCCATACTTGAT--------CA------TCCCAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCATTTGCTGAAAGCTTTCACTCC---A--AAA--AGGTGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGGGTCCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|3 : TGGTTTGAACTTATACAGTCAAAACTGCCATAGCGGACCCACTGTATTAAGCGACTCACTGTC-----ACATGTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATAT----ATT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACGGACCGT------GAT-TTTT--GCAACCATTTCGTG--TATT---TTC-----------T--------TGTA---T-TT-TACCTTTA-TTCA-GCGACCATA-TA-TT-T-CC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAAAGAGCGTGGTTAATCTA---AGAGTTATCTGCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAA-TAA---GTTTGA----T-GTGTG--TCTG----------AATTTGTTGGCATTC-TAAAACTTT-AGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTAT--TGAAACAA-CG-GCTTT-GTTATCCAA--GGTGTGAATTTCGACTGA--GTTTGAGAAT-----TATA-GGGT-GA-T-----------AG-G-TGGTGAAAAC-CT-GG-TGA-CC-CATTA----TAT-TC-CCT-----ACAATGGAAAATTAACCT-GACT----GTGACG----CAAAAT--TAGATAAAGACTGTGCATGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CAA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCAC-GAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTTCACTT-CA------ACAT---ACAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTT-TTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGA---TACTGTAA--------------T-AAAATTACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATCAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGAT--------CA------TCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCA-TTGCTGAAAGCTTTCACTCC--AA--AAA--AGGTGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|4 : tTTTGTTAGCTTTA-TGAA---TCGAGGGTTTT-ACC---------CAAGCTATCAAATAAT---------GAACACATGTTAAAGTTGC-----AGGGTC-GTTTGG--G-GT-GAA---AA-AA--TA--A---A-AAAC-----GAGTTATTG------G------AAC-AAGA---------------------------GA-------G-ATTTT-TTTCTCAAA--GGTATGGGATTTAACCTATAGTTTAA-AATG----TGCG-GAGTAGA-T-----------GGAG-T-GTGAAATT-CT-AC-T-A-CC---TTG----TTT-TT-CGTGATGCACAAAAGTAAAC-AAATT-GCCT----G-GTCG------ACAT--GAGTTTAATATTGTGCTTGAA--AATAA-TGAAGCTTAGAAA--ACTGAATTATACG-CGA-CTTTCATGTAGAATTAAGGTG-TCCTACGTTTCTA-GAAT-TAT-TTCA-AAGGTGTAGATAT----ACCC--GGTGAGTACTACCAGTTTACTT-CA------ACA------------TATTCCGCGTAGTTGACACATCCAAGTTCAAGAAAGTTGCCAGCATTAATTCAAAA-TCTACACAATGAATCT-----TTCA-TT-------TTTAAA-------AATACTTTTCCATCA-TTATTATAGGAAAAGGA-AAGCAACACCTCATCGCTCTATTTTACTATCA-GAGAAGAATTGTTGTGGGTTGTTTTTTTTTTT-ACAATTGCACGTAT-A------TGTATATTTTCTTTACAATGAATTG-TTT-TATGTTCCGTAGTCA----TCTCAAAAATAAGATTATGAAACTGAT-------------T---------A--AATGT--------AATTTTTG--ATCAGTCAT-AAACAAACGCATTGTATTATACA-TTTTAACTATTACTGATTTTATTTAAC--A-GCTCTAAATCTAAAACTATGTTTGATATTCTAAGCAATGAATTCCAAATGCA--G----TAATTTTCTCCAT------AAC--AATTAC-ATGTATTTCTCTATCACACCATTTGC-----ACCTTCACTGCGGAA--AAT--AGACAACCTG------AGTTAAGAGTCCACATGTCAAATGTGACTTTTTA------TTATACTCTACATTCTCCAATAGACGG--CCTCA--TA-----TTA--------AAGGATTGACTAT
gi|5 : gtACTTCATG--TAAT---TTCCA---------T--------TGAAAGGT-GT-TACCTTTA-TTCAGGCGACTGTACTATTT-TTTC-GAATACA-ACGCG-TTTCTA--CTT--TCGCTT--Ttt
gi|5 : aGCA-----------TGC-----AGGTTC-A-GTGG--AAGT-TAA---TT-AACGTA--C---A-CATT-----AA--TGTTGT-T--T----T-TAAT-AAAATCAAG----GATC---C--AGC-TCATGAAACGA-TG-----T-GGTTTCAAA--GTGGTGAATTTTGACAAA--GTTTG---AC-----TGTGCGGGTAGA-TCAGGTCACGCCAG-G-T-GTGAAAAT-CT-A-------C-CACC-----TATGTC-AGA-----AGAGTGGAAAATTA------------------G----TAATATTGCAATGTAACACAGTGCTTGGGATACTGACTAAAATTTggtcaaatgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacaggcatgcaggttcagtggaagttaattaacgtacacattaatgttgtttttaataaaatcaaggatccagctcatgaaacgatgtggtttcaaagtggtgaattttgacaaagtttgactgtgcgggtagatcaggtcacgccaggtgtgaaaatctaccacctatgtcagaagagtggaaaattagtaatattgcaatgtaacacagtgcttgggatactgactaaaatttgcccattgcacgtccaaggcttcgt
gi|6 : aacttcatgtaatttccattgaaaggtgttacctttattcaggcgactgtactattttttcgaatacaacgcgtttctactttcgctttggtcaaatgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacagCACCT-ACTACTTTTTTTA-CCAACA-GAGAAG---CATTG-AAG-----------TTTTCTATTTACAAATACGATACAATT-----TATGTTTTAGAA---AAT---TTACATG---------CAGACATTTCATAAATACG------------GT-------------TCTTAAACTGAGTAATGT--------AACTTTT---------TATGAA-------TAATAGATTTGAGA-TTTTAACTATTATTC-TTTT---TTACAATAG--------TTACACC-ATACTTGATATTCTTGATAATGAATTCTAGATATTTGGATATTTATTTTCTC-ATTGTACAAAC--TATTTCTGTATATT--------ACAGTATTTGCTAAAGGCCTTTATTTT--AGTTAAT--CGGTATCTTGTATGCCTATTAATAGA-CACCTGTCATATGTGACCCCCCCCCCCCACCA--------ATTTTCCATTAGGCGG--TCTCC--CA-----ATA--------CAGGTTTGACTCTACgcccattgcacgtccaaggcttcgt
gi|7 : atttTTGTACAGTCAAGACTGCCGTAGCG-ACCCACTGTATTAAGAGACTCACTGTC-----ATATGTAACC--------------CCAG-G--TGTTACTCTATATCT--GTT--GTACCTATA-TTGA-A---CAAC-CA--C----CTGTCTTACGCGA---CC-AACT-ACCAT------GA--TTTTC-ACGACCTTTTCGTG--TAAT---TTCATTAAAATTCAT--------TAAA---T-TT-TACCTCTA-AACA-ACGAC--------TT-TGTC-GATTACA-ATGCGATTCTTA--CTT--TCGATT--TCGATC-----GAGTTTGACAATTCTG---AGAGTTATCGTACCCGAC----ACTTTCGTTTTAAAACGCATATGCAT-TAactgtaatca
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTTCAGAGGAGTGGATAATTAGTCCCATTGAAATGTACACAGTGCTTGGGATTGAATAGAATTTGACATTGACACTCAAATGGCTTCGTACATGGTAATTTGGCAGTCATAATTTTTTTGATGTTGAAATTTTGAAATGACAGGAGATTTTAACTTTTAGCGGGAGGGACGGGAGGGAGTCTCAAAATCAGGAGATTTTATCTCCCGCCGGGAGAATCACATGTATG
Unaligned ( gi|9 ): AGAATGTCTTTTGTTGTGAATTTTGAAATGACAAGAGCTTTGACTTTTAGCAGAAGGATGAGCAGGGGGGGGGGGGGGGGGGGGACTCAAAATTGGGAATTACTATCTCCTGGCCGGACAAGAATCATGCATTATGA
Unaligned ( gi|10 ): TTTTTTTGCTGTTGAATATTTGAAAAAATGACGGGCACAGATTTTAAAACTTTTAGCCGGGAGGGACTGGAGAGGCGGTCTCAAAATCAGGAGATTTTATCTTCCGCCGCGGAGAATCACTATGTATG
Unaligned ( gi|18 ): TCTCCCGCCGGGAGAATCACATGTATGA
Alignments
lowQualScore : 1 1 11 11 111 11 11 3333 11 1 11111 1 2222222 222 1 1 33333333 11 11 111 777777777777777777777777777 2222 11 11 11 33333 111 2222 1 1 1 555555 111 66666666666 11 11 1 444444444 111 444444444 22222222222 11111 1 11111 111 1111 44444444444 111 22222 4444444444 22222222 22222 22222 1111 22222 111 11111111 22 1 1 111 1 1 1 1 1 1 2222 11 22222 3333333333 11 1 11 1 111 66666666666666 11 111 333333333333333 666666666666666666666666666666666666666 22222222 111 3333333333333 99999999999999999999 1111 111 11 22222222 111111 11 111111 111111 11111111 11111 11111111
lowQualScore : 0 2 0 33 33 555 11 3 33 3 9999 33 0 0 88888 0 5555555 333 0 0 66666666 77 6 11 1 444 000000000000000000000000000 8 8 8 8 77 3333 8 5 8 8 0 11 11 33 44444 777 3 0 1 3333 0 7 0 3 000000 444 77777777777 00 33 0 000000000 3 777 000000000 33333333333 22222 5 66 0 5 888 55 66 999999 66 22222 5 66 000 5 5 33 0000 1 55555555555 66 5 5 1 99 3 555 3 88888 8 0 8 8 8 2222222222 8 22222222 8 33333 8 8 00000 0 0 8 0 7777 5 1 00000 1 222 1 1 44 1 3 44444444 33 0 0 3 777 3 0 0 0 0 0 0 0 1111 33 55555 3 6 6666666666 66666 9 00 3 0 2 22 33 3 8 3 0 2 99 0 444 0 88888888888888 0 8 8 33 3 1 0 3 666 5 000000000000000 888888888888888888888888888888888888888 44444444 222 6 3 3 6 1 4444444444444 0 6 11111111111111111111 0 7777 0 444 11 0 8 44444444 0 111111 55 999999 5 2 444444 88888888 1 2 66 66 22222 88888888
lowQualScore : . . . .. .. ... .. . .. . .... .. . . ..... . ....... ... . . ........ .. . .. . ... ........................... . . . . .. .... . . . . . .. .. .. ..... ... . . . .... . . . . ...... ... ........... .. .. . ......... . ... ......... ........... ..... . .. . . ... .. .. ...... .. ..... . .. ... . . .. .... . ........... .. . . . .. . ... . ..... . . . . . .......... . ........ . ..... . . ..... . . . . .... . . ..... . ... . . .. . . ........ .. . . . ... . . . . . . . . .... .. ..... . . .......... ..... . .. . . . .. .. . . . . . .. . ... . .............. . . . .. . . . . ... . ............... ....................................... ........ ... . . . . . ............. . . .................... . .... . ... .. . . ........ . ...... .. ...... . . ...... ........ . . .. .. ..... ........
lowQualScore : 7 0 0 88 88 555 88 2 88 2 2222 88 2 0 55555 0 0000000 000 0 0 22222222 55 0 00 4 000 000000000000000000000000000 0 0 0 0 88 6666 0 6 0 0 8 00 00 88 00000 555 2 2 2 5555 0 0 0 3 333333 777 00000000000 22 88 0 000000000 2 555 000000000 88888888888 55555 0 99 0 0 888 22 99 666666 44 55555 0 99 222 0 0 44 6666 4 11111111111 11 7 7 0 22 8 666 8 00000 0 8 0 0 0 0000000000 0 00000000 0 44444 0 0 00000 8 8 0 6 0000 6 0 22222 0 444 4 4 66 0 8 66666666 88 0 0 2 555 2 0 0 0 0 0 0 2 2222 88 00000 2 5 5555555555 22222 2 55 5 2 5 88 22 2 8 5 0 5 00 6 000 8 88888888888888 6 0 0 88 2 0 8 8 888 2 000000000000000 333333333333333333333333333333333333333 22222222 777 7 5 5 7 0 2222222222222 8 4 88888888888888888888 8 0000 8 000 00 8 0 22222222 3 000000 88 222222 6 5 444444 11111111 0 5 99 99 55555 11111111
consensus : NTGGTTTGAACTTATACAGTCAAAACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACG-ACCGTG--------ATTTTTCGCAACCATTTCGTG--TATT---TTC-----------T--------TGNA---T-TT-TACCTTTA-TTCA-GCGACCGTA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAT-TAA-GT--CTG-ATGGTGGTGTTTCTG---ATTG----ATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACC--GAGTTTGAGAAT-----TATG-GGGTAGA-T-AG-GT---G------GTGAAAAC-CT-GG-TGA-CC-CATTG----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--CAGTTTAANACTGTGCNTGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CGA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGCAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTTAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGATATTCT---C---AATGAATTCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCTTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------ANTCTCCAATGGACGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
Reference ( family-655 ) : NTGGTTTGAACTTATACAGTCAAAACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACG-ACCGTG--------ATTTTTCGCAACCATTTCGTG--TATT---TTC-----------T--------TGNA---T-TT-TACCTTTA-TTCA-GCGACCGTA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAT-TAA-GTGTCTG-ATGGTGGTGTTTCTG---GTTG---GATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACC--GAGTTTGAGAAT-----TATG-GGGTAGA-T-AG-GT---G------GTGAAAAC-CT-GG-TGA-CC-CATTG----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--CAGTTTAANACTGTGCNTGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CGA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGCAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTTAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGATATTCT---C---AATGAATTCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCTTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------ANTCTCCAATGGACGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|1 : TGAGCGACTCACTGTTTACCAATTCGTGACCA--AACAAT--CCCCCAAAGTTCGT---CCTATATTCACGTTGTTTACTTTTGGTTAACATTTCGACACAATCTATACTATCTGAGCCCAATTCCGAACG-ACCATATGTTGGACATTTTCTGCAACC-TTTCGTAGTTATTCAATTC-----------TGAGTAATATGTG---T-TTATCCTTTTGCTTCC-GCGACCATAATAATTATTCCAGATTACAGACGCGATCCCTATACTTATTCCATTGTTCGATT------GGCGTGGTTAATCTATGCAGAGTT-TCGCCCCTTAC----ACTTTCGTTTT-GAACGCGCACG-AT-TAA-GT---T---TGGTGGTGATTCTG---ATTG----------TGGCATTTGTAAA--CTTAGGATTTTTACCATTATCGGACAAAC-AT---GTAGTAATGTAGGACAAAG-----------AGCTTCAGAAGGTC-GTGTGGCGA-AT-CATACCCCAGA--TA--ATACA-CTCCTCCTCGTGTTGCTATATAGTGAATTATAACTAGAATCATGATGAGATTTCTAGCTGTATTGAAACAAATGTGCTCCAGTTATCCAAAGGGTGTGA-TTTCGACT--GA-TTTGGGAATCTCATTAGG-GGGTAGAAT-AG-GA---T------GTGAAAACTCTCGGCTGAACCACATTGAGCTTAT-TCACCT-----ACAATGGAAAATTAACCTTGACTCAGTGTGAGGATGCCAAACT--CAGTTTA-------------G--A------AAGACTTAGAAAC-ACTGGATTATTTGACGA-C-CTCCT---G-A-TGAAATGATCGGTAGTTTCACCGAGTGAATCTTTGTAAAGTGTAGTAATTTAAGACCAAGG-----ACTAGCAG-TCACTTTCAGATATTATATTTCACGAGTTATTACGAGTTGTTGACACATCCAATCT-------------------------AAACTGTGTACAATGAATATCATGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCA--------GTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAA--------------TAAAATT-ACAAGTAT-A--CACATGTAAATAGTCTTTACAATAGAATA------A---------------------ATAAATAAGA----------GGT-------------T---------A--AATATAAAAAAAAAATT-------TCAATTATGAAAC-AACATATTATATTTTAGATTTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCTATACTTGA-----T---C---A------TCCAAATGCATGA----TCATTTTCTCCTTTG---AGGCTGCA-TTC-TTGTA-T--------ATACCATTTGCTAAAAGTTTTCACTCC--AA--AAAATAGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTTTCCAATGGAAAG--TCTCT--TA-----ATA--------CAGGTTTGACTGTA
gi|11 : taTT--------ATACCATTTGCTAAAAGCATTCACTCC--AA--AAAT-AGGCGACCT-----------------------GTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGG--TCTCT--TA-----ATA--------CAGGTTTGACTGtc
gi|12 : TGCATG---------CA----TTTCATAAATAAGA----------ATTAATTAAATCTATAT---------A--AATAC--------AATTTTTGTTATGAACTATGAAAC-AATATA----ATT----A-TTTTAAATATTATTAATTTTGTC
gi|13 : AGCG-----------TAC-----AGGGTC-ATGTGG--A-GT-CAT---CC-CA--TATAA---A-CCCA-----GAGTTGTTGT-T--TG--AT-TAAC-AAAATCAGG----GATC------TG---TGAAACAA-TG-GCTTG-GTTTTC
gi|14 : gGTG-----------TGC-----AGGGTT-GTATGG--AAGT-CGT---CC-CA--TA--A---A-TCCA-----CAGTTGTTGT-T--TG--TT-TAAC-AAAATC----------C----------TTGAAACAA-CG-GCTTT-GTTTCCCAA--GGTga
gi|15 : ATTAAGAGACCACATGTCATATTT-ACCTTTTT------TCC--------ATTCTTCTATGGACGG--TGTCA--TA-----ATACATGCATGCAGGTTTGACTGTACtt
gi|16 : ATTAAGAGACCAC-TGTCATATTT-ACCTTTTT------TCC--------ATTCTTCTATGGACGG--T-TCTAATACATGCATG--------CAGGTTTGACTGTACaa
gi|17 : G-----------TGC-----AGGGTC-GTGTGG--A-AT-CAT---CC-GA--TA--A---ACCCCC-----GAGTTGCTGT-T--TG--TT-TAAC-AAAATCATG----GAaa
gi|2 : TGGTTTGAACTTATACAGTCAAAACTGCCATAGCGACCCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTTTAT----ATT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAC--CA-AACG-ACCGTG--------ATTTTTTGCAACCATTTCGTG--TATT---TTC-----------T--------TG-A---TATT-TACCTTTA-TTCA-GCGACCATA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTATATAACGTATCTGAATGATAGTGTTTCTGTATGTTGGTCGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTCTGTGTGG--A-GTCCAT---CC-GA--TA--A---A--CCC-----GAGTTGTTGT-T--TG--TT-TAAC--AAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTATCCAA--GGTGTGAATTTCGACT--GAGTTTGAGAAA-----TATA-GGGTAGA-T-AG-GT---G------GTAAAAAC-CT-GG-TGA-CC-CATTA----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--TAGATAAAGACTGTGCATGGG--ACTG--TAAAACTTAGAAAATACTGGATTATATG-CAACCTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTT-ACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGA---TACTGTAA--------------TAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATGTTTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATCAATTTTGTCTTAC--T-G--------TT-AACCCATACTTGA-----T---C---A------TCCCAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCATTTGCTGAAAGCTTTCACTCC---A--AAA--AGGTGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGGGTCCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|3 : TGGTTTGAACTTATACAGTCAAAACTGCCATAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATAT----ATT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACGGACCGTG--------ATTTTT-GCAACCATTTCGTG--TATT---TTC-----------T--------TGTA---T-TT-TACCTTTA-TTCA-GCGACCATA-TA-TT-T-CC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAAAGAGCGTGGTTAATCTA---AGAGTTATCTGCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAA-TAA-GT--TTG-ATG----TGTGTCTG---A-------ATTTGTTGGCATTC-TAAAACTTTAGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTATCCAA--GGTGTGAATTTCGACT--GAGTTTGAGAAT-----TATA-GGGT-GA-T-AG-GT---G------GTGAAAAC-CT-GG-TGA-CC-CATTA----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--TAGATAAAGACTGTGCATGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CAA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGA---TACTGTAA--------------TAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATCAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGAT--------C---A------TCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCATT-GCTGAAAGCTTTCACTCC--AA--AAA--AGGTGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|4 : tTTTGTTAGCTTTA-TGAA--TCGAGGGTTTT-ACC---------CAAGCTATCAAATAAT---------GAACACATGTTAAAGTTGC-----AGGGTC-GTTTGG--G-GT-GAA---AA-AA--TA--A---A-AAAC-----GAGTTATTG------G------AAC-AAGA---------GA-----------------------G-ATTTT-TTTCTCAAA--GGTATGGGATTTAACCTATAGTTT-AAAATG----TGCG-GAGTAGA-T-GGAGT----------GTGAAATT-CT-AC-T-A-CC---TTG----TTT-TT-CGTGATGCACAAAAGTAAA-CAAAT-TGCC----TG-GTCG------ACAT--GAGTTTAATATTGTGCTTGAA--AATAA-TGAAGCTTAGAAA--ACTGAATTATACG-CGA-CTTTCATGTAGAATTAAGGTG-TCCTACGTTTCT-AGAAT-TAT-TTCA-AAGGTGTAGATAT----ACCC--GGTGAGTACTACCAGTTTACTTCAACA-----------------TATTCCGCGTAGTTGACACATCCAAGTTCAAGAAAGTTGCCAGCATTAATTCAAAA-TCTACACAATGAATCT-----TTCATT--------TTTAAA-------AATACTTTTCCATCATTATTATAGGAAAAGGA-AAGCAACACCTCATCGCTCTATTTTACTATCA-GAGAAGAATTGTTGTGGGTTGTTTTTTTTTTTACAATT-GCACGTAT-A------TGTATATTTTCTTTACAATGAATTG-TTT-TATGTTCCGTAGTCA----TCTCAAAAATAAGATTATGAAACTGAT-------------T---------A--AATGT--------AATTTTTG--ATCAGTCAT-AAACAAACGCATTGTATTATACA-TTTTAACTATTACTGATTTTATTTAAC--A-GCTCTAAATCTAAAACTATGTTTGATATTCTAAGC---AATGAATTCCAAATGCA--G----TAATTTTCTCCAT------AAC--AATTAC-ATGTATTTCTCTATCACACCATTTGC-----ACCTTCACTGCGGAA--AAT--AGACAACCTG------AGTTAAGAGTCCACATGTCAAATGTGACTTTTTA------TTATACTCTACATTCTCCAATAGACGG--CCTCA--TA-----TTA--------AAGGATTGACTAT
gi|5 : gtACTTCATG--TAAT---TTCCA---------T--------TGAAAGGT-GT-TACCTTTA-TTCAGGCGACTGTACTATTT-TTTC-GAATACA-ACGCG-TTTCTA--CTT--TCtt
gi|5 : aGCA-----------TGC-----AGGTTC-A-GTGG--AAGT-TAA---TT-AACGTA--C---A-CATT-----AA--TGTTGT-T--T----T-TAAT-AAAATCAAG----GATCC--A--GCTCATGAAACGA-TG-----T-GGTTTCAAA--GTGGTGAATTTTGACA--AAGTTTG---AC-----TGTGCGGGTAGA-TCAG-GTCACGCCAGGTGTGAAAAT-CT-A-------C-CACC-----TATGTC-AGA-----AGAGTGGAAAATTA------------------G----TAATATTGCAATGTAACACAGTGCTTGGGATACTGACTAAAATTTgctttggtcaaatgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacaggcatgcaggttcagtggaagttaattaacgtacacattaatgttgtttttaataaaatcaaggatccagctcatgaaacgatgtggtttcaaagtggtgaattttgacaaagtttgactgtgcgggtagatcaggtcacgccaggtgtgaaaatctaccacctatgtcagaagagtggaaaattagtaatattgcaatgtaacacagtgcttgggatactgactaaaatttgcccattgcacgtccaaggcttcgt
gi|6 : aacttcatgtaatttccattgaaaggtgttacctttattcaggcgactgtactattttttcgaatacaacgcgtttctactttcgctttggtcaaatgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacagCACCT-ACTACTTTTTTTA-CCAACA-GAGAAG---CATTG-AAG-----------TTTTCTATTTACAAATACGATACAATT-----TATGTTTTAGAA---AAT---TTACATG---------CAGACATTTCATAAATACG------------GT-------------TCTTAAACTGAGTAATGT--------AACTTTT---------TATGAA-------TAATAGATTTGAGA-TTTTAACTATTATTC-TTTT---TTACAATAG--------TTACACC-ATACTTGATATTCT---TGATAATGAATTCTAGATATTTGGATATTTATTTTCTC-ATTGTACAAAC--TATTTCTGTATATT--------ACAGTATTTGCTAAAGGCCTTTATTTT--AGTTAAT--CGGTATCTTGTATGCCTATTAATAGA-CACCTGTCATATGTGACCCCCCCCCCCCACCA--------ATTTTCCATTAGGCGG--TCTCC--CA-----ATA--------CAGGTTTGACTCTACgcccattgcacgtccaaggcttcgt
gi|7 : atttTTGTACAGTCAAGACTGCCGTAGCG-ACCCACTGTATTAAGAGACTCACTGTC-AT--AT--GTAACC--------------CCAG-G--TGTTACTCTATATCT--GTT--GTACCTATA-TTGA-A---CAAC-CA--C----CTGTCTTACGCGA---CC-AACT-ACCATG--------ATTTT-CACGACCTTTTCGTG--TAAT---TTCATTAAAATTCAT--------TAAA---T-TT-TACCTCTA-AACA-ACGAC--------TT-TGTC-GATTACA-ATGCGATTCTTA--CTT--TCGATT--TCGATC-----GAGTTTGACAATTCTG---AGAGTTATCGTACCCGAC----ACTTTCGTTTTAAAACGCATATGCAT-TAactgtaatca
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTTCAGAGGAGTGGATAATTAGTCCCATTGAAATGTACACAGTGCTTGGGATTGAATAGAATTTGACATTGACACTCAAATGGCTTCGTACATGGTAATTTGGCAGTCATAATTTTTTTGATGTTGAAATTTTGAAATGACAGGAGATTTTAACTTTTAGCGGGAGGGACGGGAGGGAGTCTCAAAATCAGGAGATTTTATCTCCCGCCGGGAGAATCACATGTATG
Unaligned ( gi|9 ): AGAATGTCTTTTGTTGTGAATTTTGAAATGACAAGAGCTTTGACTTTTAGCAGAAGGATGAGCAGGGGGGGGGGGGGGGGGGGGACTCAAAATTGGGAATTACTATCTCCTGGCCGGACAAGAATCATGCATTATGA
Unaligned ( gi|10 ): TTTTTTTGCTGTTGAATATTTGAAAAAATGACGGGCACAGATTTTAAAACTTTTAGCCGGGAGGGACTGGAGAGGCGGTCTCAAAATCAGGAGATTTTATCTTCCGCCGCGGAGAATCACTATGTATG
Unaligned ( gi|18 ): TCTCCCGCCGGGAGAATCACATGTATGA
Alignments
lowQualScore : 1 1 11 11 111 11 11 3333 11 1 11111 1 2222222 1111 1 1 33333333 1 11 111 777777777777777777777777777 2222 11 11 11 33333 111 2222 1 1 222 3333333 4444444 1111 11 11 1 444444444 111 444444444 22222222222 11111 1 11111 111 1111 44444444444 111 22222 4444444444 22222222 22222 22222 1111 22222 111 11111111 22 1 1 111 1 1 1 1 1 1 2222 11 22222 3333333333 11 1 11 1 111 66666666666666 11 111 333333333333333 666666666666666666666666666666666666666 22222222 111 3333333333333 99999999999999999999 1111 111 11 22222222 111111 11 111111 111111 11111111 11111 11111111
lowQualScore : 0 2 0 33 33 555 11 3 33 3 9999 33 0 0 88888 0 5555555 4444 0 0 66666666 3 0 6 11 1 444 000000000000000000000000000 8 8 8 8 77 3333 8 5 8 8 0 11 11 33 44444 777 3 0 1 3333 0 7 0 333 0 2222222 3333333 7777 00 33 0 000000000 3 777 000000000 33333333333 22222 5 66 0 5 888 55 66 999999 66 22222 5 66 000 5 5 33 0000 1 55555555555 66 5 5 1 99 3 555 3 88888 8 0 8 8 8 2222222222 8 22222222 8 33333 8 8 00000 0 0 8 0 7777 5 1 00000 1 222 1 1 44 1 3 44444444 33 0 0 3 777 3 0 0 0 0 0 0 0 1111 33 55555 3 6 6666666666 66666 9 00 3 0 2 22 33 3 8 3 0 2 99 0 444 0 88888888888888 0 8 8 33 3 1 0 3 666 5 000000000000000 888888888888888888888888888888888888888 44444444 222 6 3 3 6 1 4444444444444 0 6 11111111111111111111 0 7777 0 444 11 0 8 44444444 0 111111 55 999999 5 2 444444 88888888 1 2 66 66 22222 88888888
lowQualScore : . . . .. .. ... .. . .. . .... .. . . ..... . ....... .... . . ........ . . . .. . ... ........................... . . . . .. .... . . . . . .. .. .. ..... ... . . . .... . . . ... . ....... ....... .... .. .. . ......... . ... ......... ........... ..... . .. . . ... .. .. ...... .. ..... . .. ... . . .. .... . ........... .. . . . .. . ... . ..... . . . . . .......... . ........ . ..... . . ..... . . . . .... . . ..... . ... . . .. . . ........ .. . . . ... . . . . . . . . .... .. ..... . . .......... ..... . .. . . . .. .. . . . . . .. . ... . .............. . . . .. . . . . ... . ............... ....................................... ........ ... . . . . . ............. . . .................... . .... . ... .. . . ........ . ...... .. ...... . . ...... ........ . . .. .. ..... ........
lowQualScore : 7 0 0 88 88 555 88 2 88 2 2222 88 2 0 55555 0 0000000 0000 0 0 22222222 2 5 0 00 4 000 000000000000000000000000000 0 0 0 0 88 6666 0 6 0 0 8 00 00 88 00000 555 2 2 2 5555 0 0 0 333 7 7777777 3333333 0000 22 88 0 000000000 2 555 000000000 88888888888 55555 0 99 0 0 888 22 99 666666 44 55555 0 99 222 0 0 44 6666 4 11111111111 11 7 7 0 22 8 666 8 00000 0 8 0 0 0 0000000000 0 00000000 0 44444 0 0 00000 8 8 0 6 0000 6 0 22222 0 444 4 4 66 0 8 66666666 88 0 0 2 555 2 0 0 0 0 0 0 2 2222 88 00000 2 5 5555555555 22222 2 55 5 2 5 88 22 2 8 5 0 5 00 6 000 8 88888888888888 6 0 0 88 2 0 8 8 888 2 000000000000000 333333333333333333333333333333333333333 22222222 777 7 5 5 7 0 2222222222222 8 4 88888888888888888888 8 0000 8 000 00 8 0 22222222 3 000000 88 222222 6 5 444444 11111111 0 5 99 99 55555 11111111
consensus : NTGGTTTGAACTTATACAGTCAAAACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACG-ACCGTG--------ATTTTTCGCAACCATTTCGTG--TATT---TTC-----------T--------TGNA---T-TT-TACCTTTA-TTCA-GCGACCGTA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAT-TAA---GTTTG-ATGGTGGTGTTTC-------TGATCGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACC--GAGTTTGAGAAT-----TATG-GGGTAGA-T-AG-GT---G------GTGAAAAC-CT-GG-TGA-CC-CATTG----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--CAGTTTAANACTGTGCNTGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CGA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGCAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTTAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGATATTCT---C---AATGAATTCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCTTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------ANTCTCCAATGGACGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
Reference ( family-655 ) : NTGGTTTGAACTTATACAGTCAAAACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACG-ACCGTG--------ATTTTTCGCAACCATTTCGTG--TATT---TTC-----------T--------TGNA---T-TT-TACCTTTA-TTCA-GCGACCGTA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAT-TAA---GTCTG-ATGGTGGTGTTTC-------TGATTGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACC--GAGTTTGAGAAT-----TATG-GGGTAGA-T-AG-GT---G------GTGAAAAC-CT-GG-TGA-CC-CATTG----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--CAGTTTAANACTGTGCNTGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CGA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGCAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTTAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGATATTCT---C---AATGAATTCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCTTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------ANTCTCCAATGGACGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|1 : TGAGCGACTCACTGTTTACCAATTCGTGACCA--AACAAT--CCCCCAAAGTTCGT---CCTATATTCACGTTGTTTACTTTTGGTTAACATTTCGACACAATCTATACTATCTGAGCCCAATTCCGAACG-ACCATATGTTGGACATTTTCTGCAACC-TTTCGTAGTTATTCAATTC-----------TGAGTAATATGTG---T-TTATCCTTTTGCTTCC-GCGACCATAATAATTATTCCAGATTACAGACGCGATCCCTATACTTATTCCATTGTTCGATT------GGCGTGGTTAATCTATGCAGAGTT-TCGCCCCTTAC----ACTTTCGTTTT-GAACGCGCACG-AT-TAA---GTTTG----GTGGTGATTC-------TGATTG------TGGCATTTGTAAA--CTTAGGATTTTTACCATTATCGGACAAAC-AT---GTAGTAATGTAGGACAAAG-----------AGCTTCAGAAGGTC-GTGTGGCGA-AT-CATACCCCAGA--TA--ATACA-CTCCTCCTCGTGTTGCTATATAGTGAATTATAACTAGAATCATGATGAGATTTCTAGCTGTATTGAAACAAATGTGCTCCAGTTATCCAAAGGGTGTGA-TTTCGACT--GA-TTTGGGAATCTCATTAGG-GGGTAGAAT-AG-GA---T------GTGAAAACTCTCGGCTGAACCACATTGAGCTTAT-TCACCT-----ACAATGGAAAATTAACCTTGACTCAGTGTGAGGATGCCAAACT--CAGTTTA-------------G--A------AAGACTTAGAAAC-ACTGGATTATTTGACGA-C-CTCCT---G-A-TGAAATGATCGGTAGTTTCACCGAGTGAATCTTTGTAAAGTGTAGTAATTTAAGACCAAGG-----ACTAGCAG-TCACTTTCAGATATTATATTTCACGAGTTATTACGAGTTGTTGACACATCCAATCT-------------------------AAACTGTGTACAATGAATATCATGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCA--------GTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAA--------------TAAAATT-ACAAGTAT-A--CACATGTAAATAGTCTTTACAATAGAATA------A---------------------ATAAATAAGA----------GGT-------------T---------A--AATATAAAAAAAAAATT-------TCAATTATGAAAC-AACATATTATATTTTAGATTTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCTATACTTGA-----T---C---A------TCCAAATGCATGA----TCATTTTCTCCTTTG---AGGCTGCA-TTC-TTGTA-T--------ATACCATTTGCTAAAAGTTTTCACTCC--AA--AAAATAGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTTTCCAATGGAAAG--TCTCT--TA-----ATA--------CAGGTTTGACTGTA
gi|11 : taTT--------ATACCATTTGCTAAAAGCATTCACTCC--AA--AAAT-AGGCGACCT-----------------------GTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGG--TCTCT--TA-----ATA--------CAGGTTTGACTGtc
gi|12 : TGCATG---------CA----TTTCATAAATAAGA----------ATTAATTAAATCTATAT---------A--AATAC--------AATTTTTGTTATGAACTATGAAAC-AATATA----ATT----A-TTTTAAATATTATTAATTTTGTC
gi|13 : AGCG-----------TAC-----AGGGTC-ATGTGG--A-GT-CAT---CC-CA--TATAA---A-CCCA-----GAGTTGTTGT-T--TG--AT-TAAC-AAAATCAGG----GATC------TG---TGAAACAA-TG-GCTTG-GTTTTC
gi|14 : gGTG-----------TGC-----AGGGTT-GTATGG--AAGT-CGT---CC-CA--TA--A---A-TCCA-----CAGTTGTTGT-T--TG--TT-TAAC-AAAATC----------C----------TTGAAACAA-CG-GCTTT-GTTTCCCAA--GGTga
gi|15 : ATTAAGAGACCACATGTCATATTT-ACCTTTTT------TCC--------ATTCTTCTATGGACGG--TGTCA--TA-----ATACATGCATGCAGGTTTGACTGTACtt
gi|16 : ATTAAGAGACCAC-TGTCATATTT-ACCTTTTT------TCC--------ATTCTTCTATGGACGG--T-TCTAATACATGCATG--------CAGGTTTGACTGTACaa
gi|17 : G-----------TGC-----AGGGTC-GTGTGG--A-AT-CAT---CC-GA--TA--A---ACCCCC-----GAGTTGCTGT-T--TG--TT-TAAC-AAAATCATG----GAaa
gi|2 : TGGTTTGAACTTATACAGTCAAAACTGCCATAGCGACCCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTTTAT----ATT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAC--CA-AACG-ACCGTG--------ATTTTTTGCAACCATTTCGTG--TATT---TTC-----------T--------TG-A---TATT-TACCTTTA-TTCA-GCGACCATA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTATATAACGTATCTGAATGATAGTGTTTCTGTATGTTGGTCGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTCTGTGTGG--A-GTCCAT---CC-GA--TA--A---A--CCC-----GAGTTGTTGT-T--TG--TT-TAAC--AAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTATCCAA--GGTGTGAATTTCGACT--GAGTTTGAGAAA-----TATA-GGGTAGA-T-AG-GT---G------GTAAAAAC-CT-GG-TGA-CC-CATTA----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--TAGATAAAGACTGTGCATGGG--ACTG--TAAAACTTAGAAAATACTGGATTATATG-CAACCTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTT-ACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGA---TACTGTAA--------------TAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATGTTTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATCAATTTTGTCTTAC--T-G--------TT-AACCCATACTTGA-----T---C---A------TCCCAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCATTTGCTGAAAGCTTTCACTCC---A--AAA--AGGTGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGGGTCCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|3 : TGGTTTGAACTTATACAGTCAAAACTGCCATAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATAT----ATT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACGGACCGTG--------ATTTTT-GCAACCATTTCGTG--TATT---TTC-----------T--------TGTA---T-TT-TACCTTTA-TTCA-GCGACCATA-TA-TT-T-CC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAAAGAGCGTGGTTAATCTA---AGAGTTATCTGCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAA-TAA---GTTTG-ATG----TGTGTC-------TGA---ATTTGTTGGCATTC-TAAAACTTTAGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTATCCAA--GGTGTGAATTTCGACT--GAGTTTGAGAAT-----TATA-GGGT-GA-T-AG-GT---G------GTGAAAAC-CT-GG-TGA-CC-CATTA----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--TAGATAAAGACTGTGCATGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CAA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGA---TACTGTAA--------------TAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATCAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGAT--------C---A------TCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCATT-GCTGAAAGCTTTCACTCC--AA--AAA--AGGTGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|4 : tTTTGTTAGCTTTA-TGAA--TCGAGGGTTTT-ACC---------CAAGCTATCAAATAAT---------GAACACATGTTAAAGTTGC-----AGGGTC-GTTTGG--G-GT-GAA---AA-AA--TA--A---A-AAAC-----GAGTTATTG------G------AAC-AAGA---------GA-----------------------G-ATTTT-TTTCTCAAA--GGTATGGGATTTAACCTATAGTTT-AAAATG----TGCG-GAGTAGA-T-GGAGT----------GTGAAATT-CT-AC-T-A-CC---TTG----TTT-TT-CGTGATGCACAAAAGTAAA-CAAAT-TGCC----TG-GTCG------ACAT--GAGTTTAATATTGTGCTTGAA--AATAA-TGAAGCTTAGAAA--ACTGAATTATACG-CGA-CTTTCATGTAGAATTAAGGTG-TCCTACGTTTCT-AGAAT-TAT-TTCA-AAGGTGTAGATAT----ACCC--GGTGAGTACTACCAGTTTACTTCAACA-----------------TATTCCGCGTAGTTGACACATCCAAGTTCAAGAAAGTTGCCAGCATTAATTCAAAA-TCTACACAATGAATCT-----TTCATT--------TTTAAA-------AATACTTTTCCATCATTATTATAGGAAAAGGA-AAGCAACACCTCATCGCTCTATTTTACTATCA-GAGAAGAATTGTTGTGGGTTGTTTTTTTTTTTACAATT-GCACGTAT-A------TGTATATTTTCTTTACAATGAATTG-TTT-TATGTTCCGTAGTCA----TCTCAAAAATAAGATTATGAAACTGAT-------------T---------A--AATGT--------AATTTTTG--ATCAGTCAT-AAACAAACGCATTGTATTATACA-TTTTAACTATTACTGATTTTATTTAAC--A-GCTCTAAATCTAAAACTATGTTTGATATTCTAAGC---AATGAATTCCAAATGCA--G----TAATTTTCTCCAT------AAC--AATTAC-ATGTATTTCTCTATCACACCATTTGC-----ACCTTCACTGCGGAA--AAT--AGACAACCTG------AGTTAAGAGTCCACATGTCAAATGTGACTTTTTA------TTATACTCTACATTCTCCAATAGACGG--CCTCA--TA-----TTA--------AAGGATTGACTAT
gi|5 : gtACTTCATG--TAAT---TTCCA---------T--------TGAAAGGT-GT-TACCTTTA-TTCAGGCGACTGTACTATTT-TTTC-GAATACA-ACGCG-TTTCTA--CTT--TCtt
gi|5 : aGCA-----------TGC-----AGGTTC-A-GTGG--AAGT-TAA---TT-AACGTA--C---A-CATT-----AA--TGTTGT-T--T----T-TAAT-AAAATCAAG----GATCC--A--GCTCATGAAACGA-TG-----T-GGTTTCAAA--GTGGTGAATTTTGACA--AAGTTTG---AC-----TGTGCGGGTAGA-TCAG-GTCACGCCAGGTGTGAAAAT-CT-A-------C-CACC-----TATGTC-AGA-----AGAGTGGAAAATTA------------------G----TAATATTGCAATGTAACACAGTGCTTGGGATACTGACTAAAATTTgctttggtcaaatgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacaggcatgcaggttcagtggaagttaattaacgtacacattaatgttgtttttaataaaatcaaggatccagctcatgaaacgatgtggtttcaaagtggtgaattttgacaaagtttgactgtgcgggtagatcaggtcacgccaggtgtgaaaatctaccacctatgtcagaagagtggaaaattagtaatattgcaatgtaacacagtgcttgggatactgactaaaatttgcccattgcacgtccaaggcttcgt
gi|6 : aacttcatgtaatttccattgaaaggtgttacctttattcaggcgactgtactattttttcgaatacaacgcgtttctactttcgctttggtcaaatgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacagCACCT-ACTACTTTTTTTA-CCAACA-GAGAAG---CATTG-AAG-----------TTTTCTATTTACAAATACGATACAATT-----TATGTTTTAGAA---AAT---TTACATG---------CAGACATTTCATAAATACG------------GT-------------TCTTAAACTGAGTAATGT--------AACTTTT---------TATGAA-------TAATAGATTTGAGA-TTTTAACTATTATTC-TTTT---TTACAATAG--------TTACACC-ATACTTGATATTCT---TGATAATGAATTCTAGATATTTGGATATTTATTTTCTC-ATTGTACAAAC--TATTTCTGTATATT--------ACAGTATTTGCTAAAGGCCTTTATTTT--AGTTAAT--CGGTATCTTGTATGCCTATTAATAGA-CACCTGTCATATGTGACCCCCCCCCCCCACCA--------ATTTTCCATTAGGCGG--TCTCC--CA-----ATA--------CAGGTTTGACTCTACgcccattgcacgtccaaggcttcgt
gi|7 : atttTTGTACAGTCAAGACTGCCGTAGCG-ACCCACTGTATTAAGAGACTCACTGTC-AT--AT--GTAACC--------------CCAG-G--TGTTACTCTATATCT--GTT--GTACCTATA-TTGA-A---CAAC-CA--C----CTGTCTTACGCG-A--CC-AACT-ACCATG--------A-TTTTCACGACCTTTTCGTG--TAAT---TTCATTAAAATTCAT--------TAAA---T-TT-TACCTCTA-AACA-ACGAC--------TT-TGTC-GATTACA-ATGCGATTCTTA--CTT--TCGATT--TCGATC-----GAGTTTGACAATTCTG---AGAGTTATCGTACCCGAC----ACTTTCGTTTTAAAACGCATATGCAT-TAactgtaatca
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTTCAGAGGAGTGGATAATTAGTCCCATTGAAATGTACACAGTGCTTGGGATTGAATAGAATTTGACATTGACACTCAAATGGCTTCGTACATGGTAATTTGGCAGTCATAATTTTTTTGATGTTGAAATTTTGAAATGACAGGAGATTTTAACTTTTAGCGGGAGGGACGGGAGGGAGTCTCAAAATCAGGAGATTTTATCTCCCGCCGGGAGAATCACATGTATG
Unaligned ( gi|9 ): AGAATGTCTTTTGTTGTGAATTTTGAAATGACAAGAGCTTTGACTTTTAGCAGAAGGATGAGCAGGGGGGGGGGGGGGGGGGGGACTCAAAATTGGGAATTACTATCTCCTGGCCGGACAAGAATCATGCATTATGA
Unaligned ( gi|10 ): TTTTTTTGCTGTTGAATATTTGAAAAAATGACGGGCACAGATTTTAAAACTTTTAGCCGGGAGGGACTGGAGAGGCGGTCTCAAAATCAGGAGATTTTATCTTCCGCCGCGGAGAATCACTATGTATG
Unaligned ( gi|18 ): TCTCCCGCCGGGAGAATCACATGTATGA
Alignments
lowQualScore : 1 1 11 11 111 11 11 3333 11 1 11111 1 2222222 1111 1 1 33333333 1 11 111 777777777777777777777777777 2222 11 11 11 33333 111 2222 1 1 222 3333333 4444444 1111 11 11 1 444444444 111 444444444 22222222222 11111 1 11111 111 1111 44444444444 111 22222 4444444444 22222222 22222 22222 1111 22222 111 11111111 22 1 1 111 1 1 1 1 1 1 2222 11 22222 3333333333 11 1 11 1 111 66666666666666 11 111 333333333333333 666666666666666666666666666666666666666 22222222 111 3333333333333 99999999999999999999 1111 111 11 22222222 111111 11 111111 111111 11111111 11111 11111111
lowQualScore : 0 2 0 33 33 555 11 3 33 3 9999 33 0 0 88888 0 5555555 4444 0 0 66666666 3 0 6 11 1 444 000000000000000000000000000 8 8 8 8 77 3333 8 5 8 8 0 11 11 33 44444 777 3 0 1 3333 0 7 0 333 2222222 3333333 6666 00 33 0 000000000 3 777 000000000 33333333333 22222 5 66 0 5 888 55 66 999999 66 22222 5 66 000 5 5 33 0000 1 55555555555 66 5 5 1 99 3 555 3 88888 8 0 8 8 8 2222222222 8 22222222 8 33333 8 8 00000 0 0 8 0 7777 5 1 00000 1 222 1 1 44 1 3 44444444 33 0 0 3 777 3 0 0 0 0 0 0 0 1111 33 55555 3 6 6666666666 66666 9 00 3 0 2 22 33 3 8 3 0 2 99 0 444 0 88888888888888 0 8 8 33 3 1 0 3 666 5 000000000000000 888888888888888888888888888888888888888 44444444 222 6 3 3 6 1 4444444444444 0 6 11111111111111111111 0 7777 0 444 11 0 8 44444444 0 111111 55 999999 5 2 444444 88888888 1 2 66 66 22222 88888888
lowQualScore : . . . .. .. ... .. . .. . .... .. . . ..... . ....... .... . . ........ . . . .. . ... ........................... . . . . .. .... . . . . . .. .. .. ..... ... . . . .... . . . ... ....... ....... .... .. .. . ......... . ... ......... ........... ..... . .. . . ... .. .. ...... .. ..... . .. ... . . .. .... . ........... .. . . . .. . ... . ..... . . . . . .......... . ........ . ..... . . ..... . . . . .... . . ..... . ... . . .. . . ........ .. . . . ... . . . . . . . . .... .. ..... . . .......... ..... . .. . . . .. .. . . . . . .. . ... . .............. . . . .. . . . . ... . ............... ....................................... ........ ... . . . . . ............. . . .................... . .... . ... .. . . ........ . ...... .. ...... . . ...... ........ . . .. .. ..... ........
lowQualScore : 7 0 0 88 88 555 88 2 88 2 2222 88 2 0 55555 0 0000000 0000 0 0 22222222 2 5 0 00 4 000 000000000000000000000000000 0 0 0 0 88 6666 0 6 0 0 8 00 00 88 00000 555 2 2 2 5555 0 0 0 333 7777777 3333333 7777 22 88 0 000000000 2 555 000000000 88888888888 55555 0 99 0 0 888 22 99 666666 44 55555 0 99 222 0 0 44 6666 4 11111111111 11 7 7 0 22 8 666 8 00000 0 8 0 0 0 0000000000 0 00000000 0 44444 0 0 00000 8 8 0 6 0000 6 0 22222 0 444 4 4 66 0 8 66666666 88 0 0 2 555 2 0 0 0 0 0 0 2 2222 88 00000 2 5 5555555555 22222 2 55 5 2 5 88 22 2 8 5 0 5 00 6 000 8 88888888888888 6 0 0 88 2 0 8 8 888 2 000000000000000 333333333333333333333333333333333333333 22222222 777 7 5 5 7 0 2222222222222 8 4 88888888888888888888 8 0000 8 000 00 8 0 22222222 3 000000 88 222222 6 5 444444 11111111 0 5 99 99 55555 11111111
consensus : NTGGTTTGAACTTATACAGTCAAAACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACG-ACCGTG--------ATTTTTCGCAACCATTTCGTG--TATT---TTC-----------T--------TGNA---T-TT-TACCTTTA-TTCA-GCGACCGTA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAT-TAA---GTTTG-ATGGTGGTGTTTC-------TGATCGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACC--GAGTTTGAGAAT-----TATG-GGGTAGA-T-AG-GT---G------GTGAAAAC-CT-GG-TGA-CC-CATTG----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--CAGTTTAANACTGTGCNTGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CGA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGCAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTTAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGATATTCT---C---AATGAATTCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCTTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------ANTCTCCAATGGACGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
Reference ( family-655 ) : NTGGTTTGAACTTATACAGTCAAAACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACG-ACCGTG--------ATTTTTCGCAACCATTTCGTG--TATT---TTC-----------T--------TGNA---T-TT-TACCTTTA-TTCA-GCGACCGTA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAT-TAA---GTTTG-ATGGTGGTGTTTC-------TGATCGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACC--GAGTTTGAGAAT-----TATG-GGGTAGA-T-AG-GT---G------GTGAAAAC-CT-GG-TGA-CC-CATTG----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--CAGTTTAANACTGTGCNTGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CGA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGCAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTTAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGATATTCT---C---AATGAATTCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCTTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------ANTCTCCAATGGACGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|1 : TGAGCGACTCACTGTTTACCAATTCGTGACCA--AACAAT--CCCCCAAAGTTCGT---CCTATATTCACGTTGTTTACTTTTGGTTAACATTTCGACACAATCTATACTATCTGAGCCCAATTCCGAACG-ACCATATGTTGGACATTTTCTGCAACC-TTTCGTAGTTATTCAATTC-----------TGAGTAATATGTG---T-TTATCCTTTTGCTTCC-GCGACCATAATAATTATTCCAGATTACAGACGCGATCCCTATACTTATTCCATTGTTCGATT------GGCGTGGTTAATCTATGCAGAGTT-TCGCCCCTTAC----ACTTTCGTTTT-GAACGCGCACG-AT-TAA---GTTTG----GTGGTGATTC-------TGATTG------TGGCATTTGTAAA--CTTAGGATTTTTACCATTATCGGACAAAC-AT---GTAGTAATGTAGGACAAAG-----------AGCTTCAGAAGGTC-GTGTGGCGA-AT-CATACCCCAGA--TA--ATACA-CTCCTCCTCGTGTTGCTATATAGTGAATTATAACTAGAATCATGATGAGATTTCTAGCTGTATTGAAACAAATGTGCTCCAGTTATCCAAAGGGTGTGA-TTTCGACT--GA-TTTGGGAATCTCATTAGG-GGGTAGAAT-AG-GA---T------GTGAAAACTCTCGGCTGAACCACATTGAGCTTAT-TCACCT-----ACAATGGAAAATTAACCTTGACTCAGTGTGAGGATGCCAAACT--CAGTTTA-------------G--A------AAGACTTAGAAAC-ACTGGATTATTTGACGA-C-CTCCT---G-A-TGAAATGATCGGTAGTTTCACCGAGTGAATCTTTGTAAAGTGTAGTAATTTAAGACCAAGG-----ACTAGCAG-TCACTTTCAGATATTATATTTCACGAGTTATTACGAGTTGTTGACACATCCAATCT-------------------------AAACTGTGTACAATGAATATCATGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCA--------GTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAA--------------TAAAATT-ACAAGTAT-A--CACATGTAAATAGTCTTTACAATAGAATA------A---------------------ATAAATAAGA----------GGT-------------T---------A--AATATAAAAAAAAAATT-------TCAATTATGAAAC-AACATATTATATTTTAGATTTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCTATACTTGA-----T---C---A------TCCAAATGCATGA----TCATTTTCTCCTTTG---AGGCTGCA-TTC-TTGTA-T--------ATACCATTTGCTAAAAGTTTTCACTCC--AA--AAAATAGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTTTCCAATGGAAAG--TCTCT--TA-----ATA--------CAGGTTTGACTGTA
gi|11 : taTT--------ATACCATTTGCTAAAAGCATTCACTCC--AA--AAAT-AGGCGACCT-----------------------GTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGG--TCTCT--TA-----ATA--------CAGGTTTGACTGtc
gi|12 : TGCATG---------CA----TTTCATAAATAAGA----------ATTAATTAAATCTATAT---------A--AATAC--------AATTTTTGTTATGAACTATGAAAC-AATATA----ATT----A-TTTTAAATATTATTAATTTTGTC
gi|13 : AGCG-----------TAC-----AGGGTC-ATGTGG--A-GT-CAT---CC-CA--TATAA---A-CCCA-----GAGTTGTTGT-T--TG--AT-TAAC-AAAATCAGG----GATC------TG---TGAAACAA-TG-GCTTG-GTTTTC
gi|14 : gGTG-----------TGC-----AGGGTT-GTATGG--AAGT-CGT---CC-CA--TA--A---A-TCCA-----CAGTTGTTGT-T--TG--TT-TAAC-AAAATC----------C----------TTGAAACAA-CG-GCTTT-GTTTCCCAA--GGTga
gi|15 : ATTAAGAGACCACATGTCATATTT-ACCTTTTT------TCC--------ATTCTTCTATGGACGG--TGTCA--TA-----ATACATGCATGCAGGTTTGACTGTACtt
gi|16 : ATTAAGAGACCAC-TGTCATATTT-ACCTTTTT------TCC--------ATTCTTCTATGGACGG--T-TCTAATACATGCATG--------CAGGTTTGACTGTACaa
gi|17 : G-----------TGC-----AGGGTC-GTGTGG--A-AT-CAT---CC-GA--TA--A---ACCCCC-----GAGTTGCTGT-T--TG--TT-TAAC-AAAATCATG----GAaa
gi|2 : TGGTTTGAACTTATACAGTCAAAACTGCCATAGCGACCCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTTTAT----ATT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAC--CA-AACG-ACCGTG--------ATTTTTTGCAACCATTTCGTG--TATT---TTC-----------T--------TG-A---TATT-TACCTTTA-TTCA-GCGACCATA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTATATAACGTATCTGAATGATAGTGTTTCTGTATGTTGGTCGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTCTGTGTGG--A-GTCCAT---CC-GA--TA--A---A--CCC-----GAGTTGTTGT-T--TG--TT-TAAC--AAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTATCCAA--GGTGTGAATTTCGACT--GAGTTTGAGAAA-----TATA-GGGTAGA-T-AG-GT---G------GTAAAAAC-CT-GG-TGA-CC-CATTA----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--TAGATAAAGACTGTGCATGGG--ACTG--TAAAACTTAGAAAATACTGGATTATATG-CAACCTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTT-ACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGA---TACTGTAA--------------TAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATGTTTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATCAATTTTGTCTTAC--T-G--------TT-AACCCATACTTGA-----T---C---A------TCCCAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCATTTGCTGAAAGCTTTCACTCC---A--AAA--AGGTGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGGGTCCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|3 : TGGTTTGAACTTATACAGTCAAAACTGCCATAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATAT----ATT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACGGACCGTG--------ATTTTT-GCAACCATTTCGTG--TATT---TTC-----------T--------TGTA---T-TT-TACCTTTA-TTCA-GCGACCATA-TA-TT-T-CC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAAAGAGCGTGGTTAATCTA---AGAGTTATCTGCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAA-TAA---GTTTG-ATG----TGTGTC-------TGA---ATTTGTTGGCATTC-TAAAACTTTAGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTATCCAA--GGTGTGAATTTCGACT--GAGTTTGAGAAT-----TATA-GGGT-GA-T-AG-GT---G------GTGAAAAC-CT-GG-TGA-CC-CATTA----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--TAGATAAAGACTGTGCATGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CAA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGA---TACTGTAA--------------TAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATCAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGAT--------C---A------TCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCATT-GCTGAAAGCTTTCACTCC--AA--AAA--AGGTGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|4 : tTTTGTTAGCTTTA-TGAA--TCGAGGGTTTT-ACC---------CAAGCTATCAAATAAT---------GAACACATGTTAAAGTTGC-----AGGGTC-GTTTGG--G-GT-GAA---AA-AA--TA--A---A-AAAC-----GAGTTATTG------G------AAC-AAGA---------GA-----------------------G-ATTTT-TTTCTCAAA--GGTATGGGATTTAACCTATAGTTT-AAAATG----TGCG-GAGTAGA-T-GGAGT----------GTGAAATT-CT-AC-T-A-CC---TTG----TTT-TT-CGTGATGCACAAAAGTAAA-CAAAT-TGCC----TG-GTCG------ACAT--GAGTTTAATATTGTGCTTGAA--AATAA-TGAAGCTTAGAAA--ACTGAATTATACG-CGA-CTTTCATGTAGAATTAAGGTG-TCCTACGTTTCT-AGAAT-TAT-TTCA-AAGGTGTAGATAT----ACCC--GGTGAGTACTACCAGTTTACTTCAACA-----------------TATTCCGCGTAGTTGACACATCCAAGTTCAAGAAAGTTGCCAGCATTAATTCAAAA-TCTACACAATGAATCT-----TTCATT--------TTTAAA-------AATACTTTTCCATCATTATTATAGGAAAAGGA-AAGCAACACCTCATCGCTCTATTTTACTATCA-GAGAAGAATTGTTGTGGGTTGTTTTTTTTTTTACAATT-GCACGTAT-A------TGTATATTTTCTTTACAATGAATTG-TTT-TATGTTCCGTAGTCA----TCTCAAAAATAAGATTATGAAACTGAT-------------T---------A--AATGT--------AATTTTTG--ATCAGTCAT-AAACAAACGCATTGTATTATACA-TTTTAACTATTACTGATTTTATTTAAC--A-GCTCTAAATCTAAAACTATGTTTGATATTCTAAGC---AATGAATTCCAAATGCA--G----TAATTTTCTCCAT------AAC--AATTAC-ATGTATTTCTCTATCACACCATTTGC-----ACCTTCACTGCGGAA--AAT--AGACAACCTG------AGTTAAGAGTCCACATGTCAAATGTGACTTTTTA------TTATACTCTACATTCTCCAATAGACGG--CCTCA--TA-----TTA--------AAGGATTGACTAT
gi|5 : gtACTTCATG--TAAT---TTCCA---------T--------TGAAAGGT-GT-TACCTTTA-TTCAGGCGACTGTACTATTT-TTTC-GAATACA-ACGCG-TTTCTA--CTT--TCtt
gi|5 : aGCA-----------TGC-----AGGTTC-A-GTGG--AAGT-TAA---TT-AACGTA--C---A-CATT-----AA--TGTTGT-T--T----T-TAAT-AAAATCAAG----GATCC--A--GCTCATGAAACGA-TG-----T-GGTTTCAAA--GTGGTGAATTTTGACA--AAGTTTG---AC-----TGTGCGGGTAGA-TCAG-GTCACGCCAGGTGTGAAAAT-CT-A-------C-CACC-----TATGTC-AGA-----AGAGTGGAAAATTA------------------G----TAATATTGCAATGTAACACAGTGCTTGGGATACTGACTAAAATTTgctttggtcaaatgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacaggcatgcaggttcagtggaagttaattaacgtacacattaatgttgtttttaataaaatcaaggatccagctcatgaaacgatgtggtttcaaagtggtgaattttgacaaagtttgactgtgcgggtagatcaggtcacgccaggtgtgaaaatctaccacctatgtcagaagagtggaaaattagtaatattgcaatgtaacacagtgcttgggatactgactaaaatttgcccattgcacgtccaaggcttcgt
gi|6 : aacttcatgtaatttccattgaaaggtgttacctttattcaggcgactgtactattttttcgaatacaacgcgtttctactttcgctttggtcaaatgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacagCACCT-ACTACTTTTTTTA-CCAACA-GAGAAG---CATTG-AAG-----------TTTTCTATTTACAAATACGATACAATT-----TATGTTTTAGAA---AAT---TTACATG---------CAGACATTTCATAAATACG------------GT-------------TCTTAAACTGAGTAATGT--------AACTTTT---------TATGAA-------TAATAGATTTGAGA-TTTTAACTATTATTC-TTTT---TTACAATAG--------TTACACC-ATACTTGATATTCT---TGATAATGAATTCTAGATATTTGGATATTTATTTTCTC-ATTGTACAAAC--TATTTCTGTATATT--------ACAGTATTTGCTAAAGGCCTTTATTTT--AGTTAAT--CGGTATCTTGTATGCCTATTAATAGA-CACCTGTCATATGTGACCCCCCCCCCCCACCA--------ATTTTCCATTAGGCGG--TCTCC--CA-----ATA--------CAGGTTTGACTCTACgcccattgcacgtccaaggcttcgt
gi|7 : atttTTGTACAGTCAAGACTGCCGTAGCG-ACCCACTGTATTAAGAGACTCACTGTC-AT--AT--GTAACC--------------CCAG-G--TGTTACTCTATATCT--GTT--GTACCTATA-TTGA-A---CAAC-CA--C----CTGTCTTACGCG-A--CC-AACT-ACCATG--------A-TTTTCACGACCTTTTCGTG--TAAT---TTCATTAAAATTCAT--------TAAA---T-TT-TACCTCTA-AACA-ACGAC--------TT-TGTC-GATTACA-ATGCGATTCTTA--CTT--TCGATT--TCGATC-----GAGTTTGACAATTCTG---AGAGTTATCGTACCCGAC----ACTTTCGTTTTAAAACGCATATGCAT-TAactgtaatca
blockSeqs : G . . . ATA TC A . T CT . . A . C AC . G . T T A . T . ATTAAAATTCATTAAA A . . G CA CTAT . T . . . . . TCAAA . A A TGTG A T A CGT AATGATA TGTATGT TCGA C AC . . T CAA . CATGTTAAAGT . T . A C . C CG TAA CC . . . A . . AG . T CAGCTCA T . . T . A CTA A G C . C A CACGCCAGGT . GGTGA . A G . GATGC . . T A C A TGC A A AG T A ATACTGAC AT . C T GTA A T . . . . . . . TGAGT T C TA AAATG A T C CG TT T G T G G TA T AAT GTTGTTTTTTTTTT T G TG G A T GTT G TTCCGTAGTCA ATTAATTAAATCTATATA . GTT A T T . G AGCTCTAAAT C TATTCTAAGCAATGAAT ATAT TAC . T TCTCTATC GGAA T TATGCC A G CCCCCA TACTCTAC G A GT AA CATGC CATGCATG
blockSeqs : . . . . ATA TC A . T . . . A . C AA . . . T C A . T . CATTGAAAGG . . . . CA TA . T . . . . . TCAA . A A TGTG . T . . ATG . A C . . . T . . . . . . A . . C . A C . . . T . . AT . T ATGTAT C . . T . A T A . . . . . G . GGTGA . A . . . . . T A C A T A A AG T A ACTGA . . . T . A . . . . . . . . . T T TA AAATG A T C CG T T G T . G A T . GTT . . TG G A T GT G CAGACA TTATGAAACTGATTA . GTT . T T . G AATAG C TATTCTTGATAATGAAT . . . . . AGTT . . C G . . T C . . . .
blockSeqs : . . . . . . . T . . . A . C A . . . . . A . A . TTGTA . . . . TG TA . G . . . . . . . A G . . C . A . . . T . . . . . . . . . G . A T . . . T . . AT . T ATGTAT C . . A . G T A . . . . . G . ACTA . G . . . . . . T T C T T T AT T T AATAA . . . T . A . . . . . . . . . T . . . C A . . . . T A . . . . . . . . TA T T A GT G CA GTTCTTAAACTGAGT . GTT . T A . G TG T TCA . . . . . AA . . C G . . T C . . . .
blockSeqs : T . A . TTGA . . . . . . . . . . . . . . . . . . . G . A C . . . T . . AT . T TG C . . A . A A . . . . . . . . A . . . . . . . . . . T G T T AC A T ACTG . . . . . . . . . . . A CA GGTTA . G . A T . A TG . TCA . . . . . AA . . A G . . G A . . . .
blockSeqs : . . . . . . . G . A A . . . T . . AA . . T T . . C . . CA GGTTA . . . . . . . . A . . C G . . G A . . . .
blockSeqs : . . . . . . . A . A C . . . . . . . . . . . . . T . . . . T C . . . .
blockSeqs : . . . . . . . A . C . . . . . . . . . . . . . T C . . . .
blockSeqCons : ** *** TTGA*********************** TA** ** ** ***** ** *** G* A***** ***** ** T** **** ATGTT****** C* ** ***** GTA***** A**** **** C**** AN ACTGA*** TG GT* CA************* GTTTTAAACCGGTTA************************ ******** GTT TCA***************** ** **
originalCons : NTGGTTTGAACTTATACAGTCAAAACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACG-ACCGTG--------ATTTTTCGCAACCATTTCGTG--TATT---TTC-----------T--------TGNA---T-TT-TACCTTTA-TTCA-GCGACCGTA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAT-TAA---GTTTG-ATGGTGGTGTTTC-------TGATCGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTATTGAAACAA-CG-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACC--GAGTTTGAGAAT-----TATG-GGGTAGA-T-AG-GT---G------GTGAAAAC-CT-GG-TGA-CC-CATTG----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--CAGTTTAANACTGTGCNTGGG--ACTGA-TAAAACTTAGAAA--ACTGGATTATATG-CGA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGCAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTTAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGA----------GGT-------------T---------A--AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGATATTCT---C---AATGAATTCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCTTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------ANTCTCCAATGGACGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
finalCons : NTGGTTTGAACTTATACAGTCAAAACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACG-ACCGTG--------ATTTTTCGCAACCATTTCGTG--TATT---TTCTTGA-----------------------T-TT-TACCTTTA-TTCA-GCGACCGTATA--TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAT-TAA---GTTTG-ATGGTGGTGTTTC-------TGATCGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GT-CAT---CCG-A--TAA-----A-CCCC-----GAGTTGTTGT-T--TGT--T-TAAC-AAAATCATG----GATCATGTT------TGAAACAAC-G-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACC--GAGTTTGAGAAT-----TATG-GGGTAGA-T-AG-GT---G------GTGAAAAC-CTGTA-----CC-CATTA----TAT-TC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACGC----AAAAT--CAGTTTAANACTGTGCNTGGGACTGA---TAAAACTTAGAAA--ACTGGATTATATG-CGA-CTTTCCT---GAA-CGAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGCAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTT-AATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTTAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATGT-TTGCATGCA-------------TTTCATAAATAAGAGTTTTAAACCGGTTA------------------------AATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGATCA-----------------TCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCTTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------ANTCTCCAATGGACGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTTCAGAGGAGTGGATAATTAGTCCCATTGAAATGTACACAGTGCTTGGGATTGAATAGAATTTGACATTGACACTCAAATGGCTTCGTACATGGTAATTTGGCAGTCATAATTTTTTTGATGTTGAAATTTTGAAATGACAGGAGATTTTAACTTTTAGCGGGAGGGACGGGAGGGAGTCTCAAAATCAGGAGATTTTATCTCCCGCCGGGAGAATCACATGTATG
Unaligned ( gi|9 ): AGAATGTCTTTTGTTGTGAATTTTGAAATGACAAGAGCTTTGACTTTTAGCAGAAGGATGAGCAGGGGGGGGGGGGGGGGGGGGACTCAAAATTGGGAATTACTATCTCCTGGCCGGACAAGAATCATGCATTATGA
Unaligned ( gi|10 ): TTTTTTTGCTGTTGAATATTTGAAAAAATGACGGGCACAGATTTTAAAACTTTTAGCCGGGAGGGACTGGAGAGGCGGTCTCAAAATCAGGAGATTTTATCTTCCGCCGCGGAGAATCACTATGTATG
Unaligned ( gi|18 ): TCTCCCGCCGGGAGAATCACATGTATGA
Alignments
lowQualScore : 1 1 11 11 111 11 11 3333 11 1 11111 1 2222222 1111 1 1 33333333 1 11 111 8888888888888888888888888888888 11 2222 11 11 11 33333 111 2222 1 1 222 3333333 555555555555 11 11 1 444444444 111 444444444 22222222222 11111 1 111111 111 555555555555555555555 11 222222222 33333333333 1 444444444444 111 1111 22222 1111 22222 111 11111111 1111 1 11 2222 1 1 1 1 1 1 2222 11 22222 444444444444444 1 1 11 1 111 66666666666666 11 111 333333333333333 88888888888888 22222222 111 3333333333333 8888888888888888 1111 111 11 22222222 111111 11 111111 111111 11111111 11111 11111111
lowQualScore : 0 2 0 33 33 555 11 3 33 3 9999 33 0 0 88888 0 5555555 4444 0 0 66666666 3 0 6 11 1 444 4444444444444444444444444444444 8 11 8 77 3333 8 5 8 8 0 11 11 33 44444 777 3 0 1 3333 0 7 0 333 2222222 666666666666 00 33 0 000000000 3 777 000000000 33333333333 22222 5 66 0 5 888 55 66 999999 5 777777 5 66 000 5 5 33 444444444444444444444 66 5 5 1 99 3 4 11 888888888 8 0 8 88888888888 8 0 888888888888 333 7777 0 8 00000 0 0 8 0 7777 5 1 00000 1 222 1 1 44 1 3 44444444 4444 0 33 0000 0 0 0 0 0 0 0 1111 33 55555 3 6 222222222222222 9 00 3 0 2 22 0 3 3 8 3 0 2 99 0 444 0 88888888888888 0 8 8 33 3 1 0 3 666 5 000000000000000 00000000000000 6 44444444 222 6 3 3 6 1 4444444444444 0 6 8888888888888888 0 7777 0 444 11 0 8 44444444 0 111111 55 999999 5 2 444444 88888888 1 2 66 66 22222 88888888
lowQualScore : . . . .. .. ... .. . .. . .... .. . . ..... . ....... .... . . ........ . . . .. . ... ............................... . .. . .. .... . . . . . .. .. .. ..... ... . . . .... . . . ... ....... ............ .. .. . ......... . ... ......... ........... ..... . .. . . ... .. .. ...... . ...... . .. ... . . .. ..................... .. . . . .. . . .. ......... . . . ........... . . ............ ... .... . . ..... . . . . .... . . ..... . ... . . .. . . ........ .... . .. .... . . . . . . . .... .. ..... . . ............... . .. . . . .. . . . . . . . .. . ... . .............. . . . .. . . . . ... . ............... .............. . ........ ... . . . . . ............. . . ................ . .... . ... .. . . ........ . ...... .. ...... . . ...... ........ . . .. .. ..... ........
lowQualScore : 7 0 0 88 88 555 88 2 88 2 2222 88 2 0 55555 0 0000000 0000 0 0 22222222 2 5 0 00 4 000 4444444444444444444444444444444 0 00 0 88 6666 0 6 0 0 8 00 00 88 00000 555 2 2 2 5555 0 0 0 333 7777777 000000000000 22 88 0 000000000 2 555 000000000 88888888888 55555 0 99 0 0 888 22 99 666666 0 000000 0 99 222 0 0 44 666666666666666666666 11 7 7 0 22 8 6 00 888888888 0 8 0 00000000000 0 0 222222222222 666 0000 8 0 00000 8 8 0 6 0000 6 0 22222 0 444 4 4 66 0 8 66666666 8888 0 22 8888 0 0 0 0 0 0 2 2222 88 00000 2 5 000000000000000 2 55 5 2 5 88 0 2 2 8 5 0 5 00 6 000 8 88888888888888 6 0 0 88 2 0 8 8 888 2 000000000000000 88888888888888 7 22222222 777 7 5 5 7 0 2222222222222 8 4 2222222222222222 8 0000 8 000 00 8 0 22222222 3 000000 88 222222 6 5 444444 11111111 0 5 99 99 55555 11111111
consensus : NTGGTTTGAACTTATACAGTCAAAACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACG-ACCGTG--------ATTTTTCGCAACCATTTCGTG--TATT---TTC--T---T-----------G-A----TA----TTTA-CCTTT--ATTCA-GCGACCGTA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAT-TAA---GTTTGA-TGGTGGTGTTTCTG-------ATCGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GTC-AT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTAT--TGAAACAA-CG-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACCGA--GTTTGAGAAT-----TATG-GGGTAGA-T-----------AG-GTGGTGAAAAC------CTGGTGACC-CATTA----TATTC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--CAGTTTAANACTGTGCNTGGG--ACTGA-TAAAACTTAGAAA-A--CTGGATTATATG-CGAC-TTTCCTG---AAC-GAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGCAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTA-TTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTTAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGA-T---T-AAACCG-GT-TAAATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGATATTCT---CAATGAATTCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCTTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------ANTCTCCAATGGACGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
Reference ( family-655 ) : NTGGTTTGAACTTATACAGTCAAAACTGCCGTAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATATCC--GTT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACG-ACCGTG--------ATTTTTCGCAACCATTTCGTG--TATT---TTC--T---T-----------G-A----T-----TTTA-CCTTT--ATTCA-GCGACCGTA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAT-TAA---GTTTGA-TGGTGGTGTTTCTG-------ATCGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAACTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GTC-AT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGT-T--TGAAACAA-CG-GCTTT-GTTNTCCAA--GGTGTGAATTTCGACCGA--GTTTGAGAAT-----TATG-GGGTAGA-T-----------AG-GTGGTGAAAAC------CTG-T-ACC-CATTA----TATTC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--CAGTTTAANACTGTGCNTGGG--ACTGA-TAAAACTTAGAAA-A--CTGGATTATATG-CGAC-TTTCCTG---AAC-GAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGCAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTA-TTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAAG-----------TTTAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATANAATG-TTTGCATG---------CA----TTTCATAAATAAGAGTT--TTAAACCG-GT-TAAATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGAT--------CA------TCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTC-GTGTATT--------ATACCATTTGCTAAAAGCTTTCACTCC--AA--AAA--AGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------ANTCTCCAATGGACGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|1 : TGAGCGACTCACTGTTTACCAATTCGTGACCA--AACAAT--CCCCCAAAGTTCGT---CCTATATTCACGTTGTTTACTTTTGGTTAACATTTCGACACAATCTATACTATCTGAGCCCAATTCCGAACG-ACCATATGTTGGACATTTTCTGCAACC-TTTCGTAGTTATTCAATTC--TGAGT-----------A-A----TATGTGTTTATCCTTTTGCTTCC-GCGACCATAATAATTATTCCAGATTACAGACGCGATCCCTATACTTATTCCATTGTTCGATT------GGCGTGGTTAATCTATGCAGAGTT-TCGCCCCTTAC----ACTTTCGTTTT-GAACGCGCACG-AT-TAA---GTTTG----GTGGTGATTCTG-------ATTG------TGGCATTTGTAAA--CTTAGGATTTTTACCATTATCGGACAAAC-AT---GTAGTAATGTAGGACAAAG-----------AGCTTCAGAAGGTC-GTGTGGCGA-ATC-ATACCCCAGA--TA--ATACA-CTCCTCCTCGTGTTGCTATATAGTGAATTATAACTAGAATCATGATGAGATTTCTAGCTGTAT--TGAAACAAATGTGCTCCAGTTATCCAAAGGGTGTGA-TTTCGACTGA---TTTGGGAATCTCATTAGG-GGGTAGAAT-----------AG-GATGTGAAAACTCTCGGCTG-A-ACCACATTGAGCTTATTCACCT-----ACAATGGAAAATTAACCTTGACTCAGTGTGAGGATGCCAAACT--CAGTTTA-------------G--A------AAGACTTAGAAACA--CTGGATTATTTGACGAC--CTCCTG----AT-GAAATGATCGGTAGTTTCACCGAGTGAATCTTTGTAAAGTGTAGTAATTTAAGACCAAGG-----ACTAGCAG-TCACTTTCAGATATTATATTTCACGAGTTATTACGAGTTGTTGACACATCCAATCT-------------------------AAACTGTGTACAATGAATATCATGGTTTA-TTTAATGTCTTTCAATGATTTGAATAAATTTCCA--------GTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGG---TACTGTAA--------------TAAAATT-ACAAGTAT-A--CACATGTAAATAGTCTTTACAATAGAATA------A---------------------ATAAATAAGA------------G-GT-TAAATATAAAAAAAAAATT-------TCAATTATGAAAC-AACATATTATATTTTAGATTTTTAAACATTATTAATTTTGTCTTAC--T-G--------TTAAACCTATACTTGAT--------CA------TCCAAATGCATGA----TCATTTTCTCCTTTG---AGGCTGCA-TTC-TTGTA-T--------ATACCATTTGCTAAAAGTTTTCACTCC--AA--AAAATAGGCGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTTTCCAATGGAAAG--TCTCT--TA-----ATA--------CAGGTTTGACTGTA
gi|11 : taTT--------ATACCATTTGCTAAAAGCATTCACTCC--AA--AAAT-AGGCGACCT-----------------------GTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGG--TCTCT--TA-----ATA--------CAGGTTTGACTGtc
gi|12 : TGCATG---------CA----TTTCATAAATAAGAATTAATTAAATCT-ATATAAATAC--------AATTTTTGTTATGAACTATGAAAC-AATATA----ATT----A-TTTTAAATATTATTAATTTTGTC
gi|13 : AGCG-----------TAC-----AGGGTC-ATGTGG--A-GTC-AT---CC-CA--TATAA---A-CCCA-----GAGTTGTTGT-T--TG--AT-TAAC-AAAATCAGG----GATC------TG-----TGAAACAA-TG-GCTTG-GTTTTC
gi|14 : gGTG-----------TGC-----AGGGTT-GTATGG--AAGTC-GT---CC-CA--TA--A---A-TCCA-----CAGTTGTTGT-T--TG--TT-TAAC-AAAATC-------------------C-T--TGAAACAA-CG-GCTTT-GTTTCCCAA--GGTga
gi|15 : ATTAAGAGACCACATGTCATATTT-ACCTTTTT------TCC--------ATTCTTCTATGGACGG--TGTCA--TA-----ATACATGCATGCAGGTTTGACTGTACtt
gi|16 : ATTAAGAGACCAC-TGTCATATTT-ACCTTTTT------TCC--------ATTCTTCTATGGACGG--T-TCTAATACATGCATG--------CAGGTTTGACTGTACaa
gi|17 : G-----------TGC-----AGGGTC-GTGTGG--A-ATC-AT---CC-GA--TA--A---ACCCCC-----GAGTTGCTGT-T--TG--TT-TAAC-AAAATCATG----GAaa
gi|2 : TGGTTTGAACTTATACAGTCAAAACTGCCATAGCGACCCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTTTAT----ATT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAC--CA-AACG-ACCGTG--------ATTTTTTGCAACCATTTCGTG--TATT---TTC--T---T-----------G-A----TA----TTTA-CCTTT--ATTCA-GCGACCATA-TA-TT-TTCC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAA-GAGCGTGGTTAATCTA---AGAGTTATCGCCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTATATAACGTATCTGAATGATAGTGTTTCTGTATGTTGGTCGATTTGTTGGCATTC-TAAA--CTTAGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTCTGTGTGG--A-GTCCAT---CC-GA--TA--A---A-CCC------GAGTTGTTGT-T--TG--TT-TAAC-AAA-TCATG----GATC---A--TGTAT--TGAAACAA-CG-GCTTT-GTTATCCAA--GGTGTGAATTTCGACTGA--GTTTGAGAAA-----TATA-GGGTAGA-T-----------AG-GTGGTAAAAAC------CTGGTGACC-CATTA----TATTC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--TAGATAAAGACTGTGCATGGG--ACTG--TAAAACTTAGAAA-ATACTGGATTATATG-CAACCTTTCCTG---AAC-GAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTT-ACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTA-TTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGA---TACTGTAA--------------TAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATGTTTTGCATG---------CA----TTTCATAAATAAGA------------G-GT-TAAATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATCAATTTTGTCTTAC--T-G--------TT-AACCCATACTTGAT--------CA------TCCCAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCATTTGCTGAAAGCTTTCACTCC---A--AAA--AGGTGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGGGTCCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|3 : TGGTTTGAACTTATACAGTCAAAACTGCCATAGCGGACCCACTGTATTAAGCGACTCACTGTC-AC--AT--GTGACCATAAACAATTCCCCCCAAAG--CGTTACCCTATAT----ATT--TTACCTGTA-TTAA-A---CGAC-CA--C----CTGTCTGACGCGAA--CC-AACGGACCGTG--------ATTTTT-GCAACCATTTCGTG--TATT---TTC--T---T-----------GTA----T-----TTTA-CCTTT--ATTCA-GCGACCATA-TA-TT-T-CC-GATTACA-ACGCGATCCCTA--CTT--TCCATT--TCGATTTCAAAGAGCGTGGTTAATCTA---AGAGTTATCTGCCCTAACTGTGACTTTCGTTTT-GAACGCGCACGTAA-TAA---GTTTGA-TG----TGTGTCTG-------A---ATTTGTTGGCATTC-TAAAACTTTAGGATTTT-ACC---------CAAATTAT---GTAAT---------CAGCG-----------TGC-----AGGGTC-GTGTGG--A-GTC-AT---CC-GA--TA--A---A-CCCC-----GAGTTGTTGT-T--TG--TT-TAAC-AAAATCATG----GATC---A--TGTAT--TGAAACAA-CG-GCTTT-GTTATCCAA--GGTGTGAATTTCGACTGA--GTTTGAGAAT-----TATA-GGGT-GA-T-----------AG-GTGGTGAAAAC------CTGGTGACC-CATTA----TATTC-CCT-----ACAATGGAAAATTAACC-TGAC----TGTGACG----CAAAAT--TAGATAAAGACTGTGCATGGG--ACTGA-TAAAACTTAGAAA-A--CTGGATTATATG-CAAC-TTTCCTG---AAC-GAGATG-TCGTAAGTTTCA-CGAAT-AAT-TTTA-AAAGTGTAGACAT----GACC--GG-----ACTAGTAGTTCACTTCAACATA--------CAAAATGTATTACGAGTTGTTGACACATCCAAGCTAAAGAAAGCCGCCTGCATTAGTTCAAAACTGTGTACAATGAATATCGTGGTTTATTTTAATGTCTTTCAATGATTTGAATAAATTTCCAGCATTTTTGTA-TAAATGGAGAAGCAACACTTCATTACTTTCTTT--CTATCATGAGAGA---TACTGTAA--------------TAAAATT-ACAAGTAT-ATGCACGTGTAAATATTCTTTACAATATAATG-TTTGCATG---------CA----TTTCATAAATAAGA------------G-GT-TAAATAT--------AATTTTTGTTATCAATTATGAAAC-AACATATTATATTTTAGA-TTTTAAACATTATCAATTTTGTCTTAC--T-G--------TTAAACCCATACTTGAT--------CA------TCCAAATACATGA----TCATTTTCTCCATTG---AGAC--CATTTA-GTGTATT--------ATACCA-TTGCTGAAAGCTTTCACTCC--AA--AAA--AGGTGACCTG------TATTAAGAGACCACCTGTCATATGTGACCTTTTT------TCA--------AGTCTCCAATGGAAGG--TCTCT--TA-----ATA--------CAGGTTTGACTGTACTTTAT
gi|4 : tTTTGTTAGCTTTA-TGAA--TCGAGGGTTTT-ACC---------CAAGCTATCAAATAAT---------GAACACATGTTAAAGTTGC-----AGGGTC-GTTTGG--G-GTG-AA---AA-AA--TA--A---A-AAAC-----GAGTTATTG------G------AAC-AAGA---------------------------GA-------G-ATTTT-TTTCTCAAA--GGTATGGGATTTAACCTATAGTTTAA-AATG----TGCG-GAGTAGA-T-----------GGAGTG-TGAAATT------CTACT-ACC---TTG----TTTTT-CGTGATGCACAAAAGTAAAC-AAAT-TGCC----TG-GTCG------ACAT--GAGTTTAATATTGTGCTTGAA--AATAA-TGAAGCTTAGAAA-A--CTGAATTATACG-CGAC-TTTCATGTAGAATTAAGGTG-TCCTACGTTTCT-AGAAT-TAT-TTCA-AAGGTGTAGATAT----ACCC--GGTGAGTACTACCAGTTTACTTCAACATA-----------------TTCCGCGTAGTTGACACATCCAAGTTCAAGAAAGTTGCCAGCATTAATTCAAAA-TCTACACAATGAATCT-----TTCA-TT-------TTTAAA-------AATACTTTTCCATCATTATTATAGGAAAAGGA-AAGCAACACCTCATCGCTCTATTTTACTATCA-GAGAAGAATTGTTGTGGGTTGTTTTTTTTTTTACAATT-GCACGTAT-A------TGTATATTTTCTTTACAATGAATTG-TTT-TATGTTCCGTAGTCA----TCTCAAAAATAAGATTA--TGAAACTG-AT-TAAATGT--------AATTTTTG--ATCAGTCAT-AAACAAACGCATTGTATTATACA-TTTTAACTATTACTGATTTTATTTAAC--A-GCTCTAAATCTAAAACTATGTTTGATATTCTAAGCAATGAATTCCAAATGCA--G----TAATTTTCTCCAT------AAC--AATTAC-ATGTATTTCTCTATCACACCATTTGC-----ACCTTCACTGCGGAA--AAT--AGACAACCTG------AGTTAAGAGTCCACATGTCAAATGTGACTTTTTA------TTATACTCTACATTCTCCAATAGACGG--CCTCA--TA-----TTA--------AAGGATTGACTAT
gi|5 : gtACTTCATG--TAAT---TTCCAT---T-----------G-AAAGGT-----GTTA-CCTTT--ATTCAGGCGACTGTACTATTT-TTTC-GAATACA-ACGCG-TTTCTA--CTT--TCtt
gi|5 : aGCA-----------TGC-----AGGTTC-A-GTGG--AAGTT-AA---TT-AACGTA--C---A-CATT-----AA--TGTTGT-T--T----T-TAAT-AAAATCAAG----GATC---C--AGC-TCATGAAACGA-TG-----T-GGTTTCAAA--GTGGTGAATTTTGACAAA--GTTTGA---C-----TGTGCGGGTAGA-TCAGGTCACGCCAG-GTG-TGAAAAT------CT----ACC-ACCTA----TGT-C-AGA-----AGAGTGGAAAATTA------------------G----TAATATTGCAATGTAACACAGTGCTTGGGATACTGACTAAAATTTgctttggtcaaatgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacaggcatgcaggttcagtggaagttaattaacgtacacattaatgttgtttttaataaaatcaaggatccagctcatgaaacgatgtggtttcaaagtggtgaattttgacaaagtttgactgtgcgggtagatcaggtcacgccaggtgtgaaaatctaccacctatgtcagaagagtggaaaattagtaatattgcaatgtaacacagtgcttgggatactgactaaaatttgcccattgcacgtccaaggcttcgt
gi|6 : aacttcatgtaatttccattgaaaggtgttacctttattcaggcgactgtactattttttcgaatacaacgcgtttctactttcgctttggtcaaatgtgatagttccttccctttagtaatacatccgatgtgacctaggctaagcaatatctttaataaacaagtacagCACCT-ACTACTTTTTTTA-CCAACA-GAGAAG---CATTG-AAG-----------TTTTCTATTTACAAATACGATACAATT-----TATGTTTTAGAA---AAT---TTACATG---------CAGACATTTCATAAATACGGTTC--TTAAACTGAGT---AATGT--------AACTTTT---------TATGAA-------TAATAGATTTGAGA-TTTTAACTATTATTC-TTTT---TTACAATAG--------TTACACC-ATACTTGATATTCTTGATAATGAATTCTAGATATTTGGATATTTATTTTCTC-ATTGTACAAAC--TATTTCTGTATATT--------ACAGTATTTGCTAAAGGCCTTTATTTT--AGTTAAT--CGGTATCTTGTATGCCTATTAATAGA-CACCTGTCATATGTGACCCCCCCCCCCCACCA--------ATTTTCCATTAGGCGG--TCTCC--CA-----ATA--------CAGGTTTGACTCTACgcccattgcacgtccaaggcttcgt
gi|7 : atttTTGTACAGTCAAGACTGCCGTAGCG-ACCCACTGTATTAAGAGACTCACTGTC-AT--AT--GTAACC--------------CCAG-G--TGTTACTCTATATCT--GTT--GTACCTATA-TTGA-A---CAAC-CA--C----CTGTCTTACGCG-A--CC-AACT-ACCATG--------A-TTTTCACGACCTTTTCGTG--TAAT---TTCA-T---TAAAATTCATTAA-A----T-----TTTA-CCTCT--AAACA-ACGAC--------TT-TGTC-GATTACA-ATGCGATTCTTA--CTT--TCGATT--TCGATC-----GAGTTTGACAATTCTG---AGAGTTATCGTACCCGAC----ACTTTCGTTTTAAAACGCATATGCAT-TAactgtaatca
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTTCAGAGGAGTGGATAATTAGTCCCATTGAAATGTACACAGTGCTTGGGATTGAATAGAATTTGACATTGACACTCAAATGGCTTCGTACATGGTAATTTGGCAGTCATAATTTTTTTGATGTTGAAATTTTGAAATGACAGGAGATTTTAACTTTTAGCGGGAGGGACGGGAGGGAGTCTCAAAATCAGGAGATTTTATCTCCCGCCGGGAGAATCACATGTATG
Unaligned ( gi|9 ): AGAATGTCTTTTGTTGTGAATTTTGAAATGACAAGAGCTTTGACTTTTAGCAGAAGGATGAGCAGGGGGGGGGGGGGGGGGGGGACTCAAAATTGGGAATTACTATCTCCTGGCCGGACAAGAATCATGCATTATGA
Unaligned ( gi|10 ): TTTTTTTGCTGTTGAATATTTGAAAAAATGACGGGCACAGATTTTAAAACTTTTAGCCGGGAGGGACTGGAGAGGCGGTCTCAAAATCAGGAGATTTTATCTTCCGCCGCGGAGAATCACTATGTATG
Unaligned ( gi|18 ): TCTCCCGCCGGGAGAATCACATGTATGA