lowQualScore : 111111111111
lowQualScore : 2 3333 2 44 22 2 1 1 2 1 22 1 333 11 2 777777777777777777777777 22222222 11 1 222 22222 2222 22222 1111 11 222222 44444444444444 1 22222 2 1 1 555555555555555555555555555555555 11111 33 111 1 111111111 33333333333333333 222 111111111111 11 11111 44444444444444 77777777777777777777777777777777777777777777777 2 222222 999999999999999999999999999999 1111 1 222222222 111111 333333333333 111 55555555555555555555555555555555555 11 1 44444444 11 111111 222 11111111 222222 111 11 2 22 22222 22222 44444444444 2 11 222 33333333333333333333333 11 1 1
lowQualScore : 2 0 4 4 0000 0 22 77 2 2 0 2 5 5 0 3 55 7 3 666 88 6 3 6 777777777777777777777777 99999999 11 3 88 6 6 0 111 00000 3333 00000 0 7777 66 333333 0 0 6 6 11111111111111 0 2 99999 0 0 8 8 6 77 333333333333333333333333333333333 99 22222 3 99 7 111 6 7 99 1 3 3 222222222 1 6 6 33333333333333333 8 0 8 222 8 555555555555 2 6 6 6 1 00 6 99 99 6 77777 77777777777777 5 5 1 77 22222222222222222222222222222222222222222222222 4 5 5 5 222222 4 3 66 5 5 999999999999999999999999999999 4 5 2222 555 8 1 2 0 66 5 5 0 0 5 5 66 99 5 5 000000000 5 666666 5 77 0 5 1 0 5 999999999999 000 5 11111111111111111111111111111111111 3 5 6 55 6 5 6 6 2 6 6 6 6 6 6 44444444 55 999999 6 6 6 333 6 6 6 99999999 3 999999 444 88 0 88 8 8 4 22 8 8 1 8 00000 0 00000 8 3 55555555555 6 4 00 99 666 6 99 6 3 6 99 55555555555555555555555 33 0 0
lowQualScore : . . . . .... . .. .. . . . . . . . . .. . . ... .. . . . ........................ ........ .. . .. . . . ... ..... .... ..... . .... .. ...... . . . . .............. . . ..... . . . . . .. ................................. .. ..... . .. . ... . . .. . . . ......... . . . ................. . . . ... . ............ . . . . . .. . .. .. . ..... .............. . . . .. ............................................... . . . . ...... . . .. . . .............................. . . .... ... . . . . .. . . . . . . .. .. . . ......... . ...... . .. . . . . . ............ ... . ................................... . . . .. . . . . . . . . . . . ........ .. ...... . . . ... . . . ........ . ...... ... .. . .. . . . .. . . . . ..... . ..... . . ........... . . .. .. ... . .. . . . .. ....................... .. . .
lowQualScore : 5 0 0 0 0000 0 55 55 5 5 0 5 5 0 0 3 33 3 3 777 33 0 7 7 333333333333333333333333 00000000 00 2 88 6 0 8 666 00000 2222 00000 8 0000 44 000000 8 8 7 7 00000000000000 0 5 00000 0 0 0 0 0 99 222222222222222222222222222222222 22 55555 2 55 8 777 7 2 22 0 3 2 000000000 7 0 7 44444444444444444 0 8 0 000 0 222222222222 5 7 7 7 0 88 7 22 22 7 77777 33333333333333 7 7 3 99 11111111111111111111111111111111111111111111111 4 0 9 7 111111 9 0 44 7 7 999999999999999999999999999999 3 7 1111 999 4 4 1 4 99 0 0 2 0 0 0 99 00 0 0 999999999 7 000000 7 99 7 7 7 7 7 777777777777 999 7 55555555555555555555555555555555555 2 7 7 88 7 0 7 7 2 7 7 7 7 7 7 33333333 88 222222 7 7 7 555 7 7 7 33333333 5 222222 222 88 8 00 0 0 0 44 0 0 0 0 00000 8 00000 0 8 88888888888 7 5 77 22 555 7 22 7 7 7 22 00000000000000000000000 88 0 0
consensus : GGGCCNTAACCNTCTAATCTCAGCCTCANACNTTTTTTGAATAACCGA-GCTTGAAAGATTTGTTATGTNANCAATCNTTTACAATCTGTTCTAATTGTGACGA-CAAAT-CTTTTAT-GCTGATTTTAATTTGATGGG---AGCTT--GAAACAGATTTC-TTACGGACTAAAGAT----------T-GC-ATT-GGAC-TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAAAATATA--TACAATT-----TTACG-T--ATGG-----CAGTA----TATTTATCTTTTATAT------AAATATAGAATATATTTCATC-AA-TTACAT-TANT-GA---T--GA-ATTATTTNATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTTTAGCA--TATA---TGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--TA-ATC--AAA-GACATG-GAAA-CGN-GCCAGT-AATTA-A-TA----T-TTTACATTGGAAGTT-ATATTT-ACT-AAGGTGCTAA-TTCAAGAT-TN-TGTATTGTA--C-AA-G---TCA------T-------AC-TTTG-TATAA--AT-G-ACC-------A-TT-CATCG-T-----------------ACGCTTTATT-CAATA-CTNGC-A------CCTAGCA-CCTGCC-ATA-ATTA-TG-GCA-----TG--T-TAT-ATA-T-AGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AAACA--TGAATAAA-A-ATGTA--------TC-T-----CGCA-GTCA--TGT-AATGTGCT-ACTTTCC-A--T---AT--GAT-C-CTG-TCCT---CN-ATATTCC---AA---A-----T-G-----CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGCG-TTTCGT-C-T-GCA-TTA-A-T---ACA--AGT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGATAAATTCC-A-AAT--GATCA-TATCTTGAAAACGCC-CCAA-C-ATGAAAAATGT-CAAA-CAAC-CGC-----CGTTTA-----C-CTTTATT-TTTTTTNTACACAC-TTTCAA-AAN-ATCAT--AGTGT-N-GA-AA--AATCCCCAGA-G--GGG---------GGA-GGTA-----NTGTGTTACTGG--C-CC-ACGGTCT
Reference ( gi|3 ) : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTGTTTTGAA-AACCGAAGCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTTTAT-GCTGATTTTAATTTGATGGG---AGCTT--GGAACAGATTTCTTTACGGACTAAAGAT----------T-GC-AT--GGA--TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAATATGTATA--TACAATT-----TTACG-T--ATGG-----CAGTA----TATTTATCGTTTATAT------AAATATAGAATATATTTCATC-AA-TTACAT-TATT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTTTAGCACGTATA---TGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATCAA-TGGGCCTCCA--TA-ATC--AAA-GA-ATG-GAAA-CGA-GCCAGT-AATTG-A-TAGGCCTATTTACATTGGAAGTT-ATATTT-ACT-AAAGTGCTAA-TTCAAGAT-TG-TGTATTATA--C-AA-G---TCA------T-------AC-TTTG-TATAA--A--A-ACC-------A-TT-CATCG-T-----------------ACA-TTTATTCCAATA-CTAGC-A------CTTAGCA-CCTGCC-ATA-ATTAATG-ACA-----TGGCT-TAT-ATA-T-AGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AAACA--TGAATAAA-A-ATGTA--------TC-T-----CGCA-GTCA--TGT-AATGTGCT-ACTTTCC-A--T---TT--GAT-C-CTG-TCCT---TA-ATACGCC---AA---A-----T-G-----CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AACAGCTA-TTGCG-TTCCGT-C-T-GCA-TTA-A-T---A----AGT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TGATAC-TGAATTT-GCCA-AAAA------T-TGATAAATTT--A-GAT--GATCA-TATCTTGAAAACGCG-CCAA-C-AT-AAATATGT-CAAA-CAAC-CGT-----CGTTTA-----C-CTTTATTTTTTTTTTTACACAC-TTTCAAGAAA-ATCAT--AGTGT-T-GA-AA--AATCCCCAGA-G--GGG---------GGA-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|1 : GGACCATA-CCTTCTAATCTCAGCCTCATACTTTTTTTGAA-AACCGA--TTTGAAAGATTT--TATGTAACCA-TCGTTTACAATCTGTTCTAATTGT-ACGAACAAATATTTTTAT-GCTGATTTTAATTTGATGGG---AGCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GC-ATTTGGACCTTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAGATAAAATATGTATA----CAATT-----TTACGCT--ATGG-----CAGTG----TATTTATAATTTATAT------AAATATAGAATAT-TTTCATC-AAATTACATATAGA-GA---T--GA-ATTATTTCATTGTTTT--CT-GTA-TG-TCCCAT-TTCTCTAACAAAACTAAATATTACATG----T----AT--------T------CAT--ATTTCC--C--CTATTTTAGC--TTATA---TGC-TCCA--GA--GTCCACAAGCGTTGCTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCAA-TA-AT---AAA-AA-ATG-GAAAACGA-GCCAGT-AATTG-A-TA----T-TTTAC-TTGGACGTT-ATATTTTACT-AAAGTGCTAAATTCAAGAT-TT-TGTATTATA--C-AAAG---TCA------T-------AC-TTTGGTATAA--ATAATACC-------A-TT-CATCG-T-----------------ACA-CCT-TTACAATA-CTAGC-AA-----TTTAACA-CCTGCCCATA-ATTACT--ACA-----TGGCT-----ATA-T-AGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T--GCAAGGG-C-AAACA--TGATTAGA-A-AAGTA--------TC-T-----CGCA-GTCA--TGT-AAT-TGCT-ACTTTCC-A--T---AT--GAA-T-CTG-TCTC---CT-ATATTCC---AA---A-----TCG-----CTCATCGATGTCCTTTCTGC-AATACTCTCTT-AAAAGCTA-TTGCG-TTCCGT-C-T-GCA-TTA-A-TA--A----AGTA-AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGATAAATTC--ATAAT--GATCA-TATCTTGAAAACGCC-CCAA-C-ATAAAAAATGT-CAAA-CAAC-CGT-----CGTTTA-----C-CTTTA---TTTTTTACATACAC-TTTCAA-AAA-ATCAT--AGTGT-T-GA-AA--AAT-CCCAGG-G--GGG---------GGG-G
gi|4 : agatctatactttcctcaatacttaatttggtttcaatcaattaatatatgtaaaattgtatatacaaccaagcaatggaaagtgtgcgtttctgaataacaatacatcctttactatccttgGGGCTCTAACCATTTAATCTCAGCTTCAAA-ATTTTTTGAATAACTGA-GCTTGAAAGATTTGTTATGTCAGCAATCCTTT-CAAT-TGTTCTAATTGTGACGA-CAAAT--TTTTAT-GCTGATTTTTATTTTATGGGA--AGCTT--GAAACAGATTTC-TTACGGACTAAAGAT----------TGGCAAT--GGGT-TTTTTTTCTACG--------TCACATAAA--GT-AT-AG--AAATAAAATA-GTATA---ACAATT-----TTACG-T--ATGG-----C-GTA----TATTTATCTTTTATAT------AAATATAG-ATATATTTCATA-AA-TTACAT---TT-GA---T--GATATTATTTAATTGTTTTGTCTGGTATTG-T-TCATAT-CTCTG-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATT-----A--CTATTTT-GCAT-TATA---TGC-TC--AAGA--GTCCAT-AGCGTT-CTTTTTGCTGAT---T-ATATTATACATTAA-TGGG-CTCCA--C--ATCATAAA-GA-ATG-G-AA-CG--GCCAGT-AATTA-AGTA--C---TTTA-ATT-GAAGTT-ATATTT-ACT-AAG--GCTAA--TCAAGAT-TG-TATATTATC--C-AA-G---TCA------T-------AC-TTTA-TATAATTA--A-ATTGGTCTGAA-CTACATCG-TTGTTTTTCAGACTATCCAC--TTTATT-CAAT---TAG--A------CATAGCA-ATTG-C-ATG-AT------ACA-----TG--T-TATAATATT-AGGTG-GTGGAATA-AGAGTTTTGGGAATGTAAAGT--CAA-T-GACAAGGG-CAAAACA--TG-ATAAA-A-ATGTA--------TCTT-----CGCA-GTCA--T-T-AATGTGCT-ATATTCC-A--TACACTCGGAT-C-CAGCTCCT---T
gi|2 : aggcttatacttcctcaatactgtaatgtttgtttcaatcattaatatgtgtaaatccataaattgacataaatgcaatggaaagtatgcgtttcggaatacaataatgtttgtactatccttGA-CAAGT-CTTT-ATAGCTGATTTTAATTTGATGAGTTAGGCTTATGAAACAGAGTGC--------CTAAA-ATGTTTTTCTTAT-GC-ATT-GGA--CTTTATG-TACGATAATCGTTAACATAAAATGTCATCAGGAAAATAAAAAAGAAACAGCTATAATTAATTGTTACGAT--ATGGGCAAGCACTAATATTATTTATCTTTTATAT------AAATATAGAATATATTTCATC-AA-ATTCAT-AAAT-GAAATTAAGA-ATTATTCAGTTGTTTT-TAT-ATAATGGTCCCAT-T-CTCTATCTG--CTAAATA-----T-----T----AT--------TCTGTATTATTCATTTCT--CATCTATTT--GCAGCTATAATTTAT-CCCAACGAACGTCCACGAGCGTT-CCCTTGGCTGATGTGTGA---TACGCATTAA-TGA-CCTCTAAGTACATC--AAC----ATGCGAAA-CAA-GCCAGTTAATTA-A-TA----T-TTCAGATTGGAAGTT-ATATTA-ACTTAGAGTGCTAA-TTCAAGATATG-TGTATTATAGTC-AA-AGATTCA------T-------ACACTTG-TATAA--AT-A-ACC-------AGTTACATCG-C-----------------AC--CTTACTACA-TAGCTTGC-GAAGCCTTTTATCATCCCACC-ATA-CGTAGTG-GCAATCAATGA-T-TAT-A-----AGGTACG----ATA-C-AGTTTTGGAACTGAATGGTAGCAA-TTGGCAA-GG-C-AA-CAACCGAGGAGA-A-ATGTA--------TC-T-----CGCAAGTCAAATCT-ATTCTGCT-ACTTTCCTG--T---TC--TCT-CTCTA-TTCT---CA-AAATGCT---AA---A-----T-------CT----GATGTC-----TGC-AA-AA-CTCT--AAAAGCTA-TTGCG-TTCCGT-CCT-GCAGTTA-A-T---ACA--GGT--AATTATGTTGCTAA-TATG-GAACACAGTAAGGT-T-ATAC-TGAATTT-GCCA-AAAAAATAATC-TGATATCTTTC-A-AATTAAATCA-TATCTTGAAA-CGCC-CCAA-CCAT-AGAAATGTGCAAA-CATT-CGCGTGCGTGTTTGTGAGCC-CCTTATTCTGTGTCG-ACACCT-TTCCAAAAAT-ATCATTGAGTGTGTAGAGAA--AATCCCCAGA-GAGGGGGTTTGGGGAGGA-GGGACGTGTATGTGTTACTGGAACGCC-ACGGTctctctaaatttccta
gi|10 : TTCTATG--------TAACATAAA--GTCATCAG-AAATTAAAAAAAAT-TA--TGCAATG-----TTACG-A--ATGG-----CAGTA----TATTTAT-ATATATATTTTTAAAAATATAGAATATATTTCATCAAA-TTACA
gi|12 : TCTATG--------TAACATAAA--GTTATCAG-AAAATTAAAAAAATATA--TACAATT-----TTACG-TAAATGG-----CACTA----TATTTATCTTTTTTAT------AAATATAGATTATATTTCATC-AA-
gi|14 : TTCCTC-AA-TTACAT-TATTTGA---TT-AA-ATTATTTCATTGTTAT-T---ATA-TA-CCCCAT-T-CTCTA-CAG--C
gi|9 : CCCAT-T-CCCTA-CAG--CTAAATC----AT-----T----AT--------T------CAT--AGTTCC--C--CTAGTTTAGCAC-T-TA---TGC-TCCAAAGA--GTCCACGAACGTT-CATTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--
gi|6 : --CTAAATA----AT-----G----ATAAATGGCAT------TAT--ATTTCC--C---TATTTTAGCA--TTTA---TGC-TCCAA-GA--ATCCATGCACTTT-CTTTT-GCTGAT---T-A---TATA-ATTAA-TGGGCCTCCA--TA--TT--AAA-GACATG-GAAG-CCT-GC-AGT-AATTA-A-CA----T-TTTACATTGGAAGTT-ATATTT-ACT-AAGGTGTTAA-CTCAA-AT-TC-TGTATTGTA--CAAA-G---TCATACATGT-------AC-TTTG-TAGAA--ATTG-AC----------TT-CATCT-T-----------------ACGCTTTATT-CAATA-CTTGC-A------CCTAGCA-CCTGCC-ATA-ATT-----GCA-----TG----TA--------AGCTA-G----GTC-A-A----TGGCAAGGCA------CAA-A-TGAAA------AAAAA--TGA--AAA-A-ATTT---------TC-T------GCA-GTC---TGTAAATGTGCT-ACTTTCC-A--T---ATAAGAT-A-CTG-TCTTC--TATATATTCT---AA---ATGTATT-G-----CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGTA-TTTCGTCC-T-GCA-TTA-A-TACAA----AGT--AA-------GC-GG-TATG-GAACACAGTAATGG-CTATAC-TGAATTT-GCC--AAAA------T-TGATAAATTC--A-AAT--GATCA-TATCTTGAAAACGCGCCCAA-C-ATGAAAT-TGT-CAAA-CACA-TGC-----CGTTTA-----C-CTTTA-----TTTTTTACACAC-TTTCA--AAA-ATCAT--A-TGTAA-GA-AA--AATCCCTAGAGG--GGG---------GGA-GGT------TTGTGTTACTGG--C-CC-ATGGTattactgcatgtaataaagttaactga
gi|5 : --CTAAATA----ATGATAATGGCAAT--------T------TAT--ATTTCCACC--CTATTTTAGCA-ATTTA---TGCCTCCAAAGC--ATCCATGCACTTTTCTTTTTGCTGAT---T-A---TAT-CATTAAATGGGCTCACA--TA-CTT--AAATGACATG-GAAG-CCCTGCCAGT-AATTACA-T-------TTTACATTGGAA-TT-ATATTT-ACT-AAGGTGTTAA-CTCAAGAT-TC-TGTATTGTA--C-AAAG---TCA------TCACATGTAC-TTTG-TAGAA--AT-G-ACC---------TT-CATCT-T-----------------ACGCTTTAT--CAATA-CTTGCCA------CCTAGCA-CCTGCC-A---AT-AATGTGCA-----TG--------------------------TA-A-GGCT-----------AGGT--CAA-T-G-CAA-GG-C-ACAAA--TGAAAAAATA-ATATGAAGAATTTTC-T-----TGCA-GTCA--TGT-A-TGTGCTTACTTTCCCACCT---AT--GAT-A-CTG-TTCT---TCTATATGTCTATAATGTA-----TTG-----CTCATCGATGTCCTTTCTGC-AA-A--CTCTTTAAAAGCTG-TTGTAATTTCGT-C-T-GCA-TTA-AAT---ACAA-AGT--AAT------GC-GG-TATGCGAACACAGTAATGGCTTATAC-TGAATTT-GCCA-AAA-------T-TGATAAAATTCAA-GAT--GATCAATATCTTGAAAACGCC-CCAAAC-ATGAAAT-TGT-CAAAACAAC-TGC-----CGTTTA-----CACTTTATTTTTT-----AC-CACCTTTCAAAAAAGATCAT--AGTGA-A-GA-AA--AATCCT-AGA-G--GGG---------GGGCGGTA-----TTGTGTTACTGG--C-CCGATGGTCT
gi|7 : TTTGCAT-GGAAGTTTATATTT-ACC-TAGGTGTTAA-TTCAAGAT-TGCTGTACTGTA--C-AA-G---TCA------TACATGTAAC-TTTG-T-TAG--A--A-ATT-------ACTT-CATCGTT-----------------ACGCTTTATT-CAATA-CTTGC-A------CCTA-CA--CTGCC-ATAGATT-CTG--CA-----TGTAT-TCT-ATG---AG--A-G----ATGTA-AGCT-----------AGGT--CAATT-GGCAA-GGCC-ACAAA--TAAAAAAA-G-ATA-A--------TC-TTGGAATGCA-GTCA--TG--AAAGTGGC-A-TTTTC-A--TA--AT--GATAC-TTG-CCTTCTATA-GTTC-CT---AA---A-----T-GTATTTTTCA-CGATGTCCTTTCTGCAAA-A--CTCTT-AAAAGCTGCTTGTA-TTTCGT-C-TAGCT-TTGCA-T---ACAAGAGTAAAAT------GC-GGTTATG-GAACACAGTAAGGC-T-ATACTTGAATTTGGCCAGAAAA------TATGATAAA--------AT----TC----------AAACGCC-CCAA-C-AT-AAAATTGT-CAAA-CAACTTGT-----CG-TTA-----C-C-TTA-----TTTTTTACACAC-TTTCAA-AAT-ATCAT--AGTGT-C-AG-AACCAAT-CCTAGA-G--
gi|15 : ttaacat-------AC-TTTG-TAGAA--ATTG-ACC-------G-TT-CATCG-C-----------------ACGCTTTATT-CAATA-C
gi|8 : TATTC-AATA-CTAGC-A------CATAGCA-CCTGCC-ATG-ATCA-----CA-----TGGCTATAT-ATA-TTAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GACAA-GG-C-AAACA--TGAATAAA-AAATGTA--------TC-T-----CGCA-GTCA--TGT-AATGTGCT-ACTTTCC-A--T---AT--GAT-C-CTG-TCCT---CT-ATATTCC---AA---A-----T-G-----CTCATCGATGTCCATTCTGC-ct
gi|16 : GAATGTAAGGT--CAA-T-GGCAG-GG-C-AAACA--TGATTAGA-A-A
gi|11 : TGTCCTTTCTGC-AA-A--CTATT-AAAAGCTA-TTGCG-T------C-T-GCA-TTA-A-T---A----AGT--AAT------AC-AG-TATG-GAACTCAGTAAGGG-TTATAC-TGAATTC-GCCA-AAAA------T-TGATAAATT
gi|13 : CACAC-TTTCAA-AAT-ATCAT--AGTGT-A-GA-AA--A-TCCCCAGA-G--GGG---------TGA-GGCA-----ATGTGTTACTGG--C-CC-ACGGTCT
Alignments
lowQualScore : 2 22 2 22 33 2 2 1 11 1 222 11 2 44444444 11 11 22222222 11111111 1111 11111 1111 11111 111111 222222 11111 1 1 333333333333333333333333333333333 222 111 1 111 111 1111111111 1 111 1111 11111 333333333333333 1 3333333333333333333333 333333333333333333 111 555555555555555555555555555555555555555555 33333333 11111 11111 1111 44444 1111 11111 11 111111 111111 11 22 11111 11111 3333 11 1111 1 222222222 2222222 11
lowQualScore : 0 11 3 1 1 44 3 00 00 1 1 3 1 7 6 3 0 66 0 3 777 33 0 2 66666666 33 66 44444444 99 1 6 3 77777777 99 6 7777 66666 4444 66666 5 5 333333 444444 8 1 77777 6 8 6 6 3 66 777777777777777777777777777777777 77 99999 5 111 2 000 5 4 77 1 1 000 5 000 0 5 9999999999 6 5 6 6 555 6 5 2222 5 0 5 5 5 88 5 66 77 99999 222222222222222 0 3 1111111111111111111111 222222222222222222 5 4 4 1 5 333 0 888 1 5 5 5 999999999999999999999999999999999999999999 5 5 9 0 1 1 66 4 4 4 4 8 4 66 2 4 4 0 00000000 5 22222 5 5 66 55 5 9999 5 99999 55 5 2 5 1 4444 5 5 5 22222 5 5 5 5 5 1111 5 5 0 5 5 5 5 5 5 55555 5 33 666666 5 5 5 4 5 5 5 5 666666 5 5 5 88 99 6 6 6 6 55 4 6 6 6 66666 66666 6 1 6 3333 5 55 5 6 77 4444 5 77 1 5 77 666666666 6 1111111 11 8 8
lowQualScore : . .. . . . .. . .. .. . . . . . . . . .. . . ... .. . . ........ .. .. ........ .. . . . ........ .. . .... ..... .... ..... . . ...... ...... . . ..... . . . . . .. ................................. .. ..... . ... . ... . . .. . . ... . ... . . .......... . . . . ... . . .... . . . . . .. . .. .. ..... ............... . . ...................... .................. . . . . . ... . ... . . . . .......................................... . . . . . . .. . . . . . . .. . . . . ........ . ..... . . .. .. . .... . ..... .. . . . . .... . . . ..... . . . . . .... . . . . . . . . . ..... . .. ...... . . . . . . . . ...... . . . .. .. . . . . .. . . . . ..... ..... . . . .... . .. . . .. .... . .. . . .. ......... . ....... .. . .
lowQualScore : 7 77 7 0 0 33 7 00 33 0 0 7 0 3 7 3 0 55 0 2 555 88 0 5 22222222 22 55 22222222 22 0 7 5 00000000 22 7 8888 77777 2222 77777 7 7 000000 000000 0 0 66666 0 0 7 7 3 99 999999999999999999999999999999999 99 33333 7 000 1 000 7 9 99 4 4 000 7 000 1 7 9999999999 7 0 7 7 222 7 7 1111 7 7 7 7 7 00 7 77 99 44444 999999999999999 0 0 6666666666666666666666 444444444444444444 0 4 4 0 0 888 2 888 4 0 0 0 555555555555555555555555555555555555555555 0 0 4 1 7 9 11 4 4 7 4 9 4 11 3 4 4 4 66666666 0 55555 0 0 99 44 0 0000 0 44444 22 0 2 0 0 6666 7 7 7 99999 7 7 0 7 7 6666 7 7 9 7 7 7 7 7 7 99999 7 66 444444 7 7 7 3 7 7 7 7 444444 7 7 7 77 22 7 7 7 7 00 0 7 7 7 77777 77777 7 7 7 5555 7 77 7 6 99 6666 7 99 4 7 99 777777777 7 8888888 00 0 0
consensus : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTTTTTTGAA-AACCGA-GCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---AGCTT--GAAACAGATTTCTTTACGGACTAAAGATT--------GCATT-GGAC-TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAA--AATA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TANT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGCA--TNTA---TGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--TA-ATC--AAA-GACATG-GAAA-CGA-GCCAGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGCTAA-TTCAAGAT-T-NTGTATTGTA--CAAAG---TCAT-------AC------TTTG-TANAAAT-GA--CCA-TT-----------CATCG-T--------A-------CGC-TTTATT-CAATA-CTNGC-A---CCT---AGCA-CCTGCC-ATA-ATT-A--TG-GC-A-----TG--TTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAANAAA-A-ATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCCT-CTATA-T--TCC-A-AAT-GTATT-CTCA-TC-GATGTCCTTTCTGC-AA-A-CTCT--T-AAAAGCTG-TTGCG-TTCCGT-C-T-GCA-TTA-A-TAC-A--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TTCNAAAT--GATCA-TATCTTGAAAACGC-CCC-AAC-ATGAAAANTGT-C-AAACAAC-CGC-----CGTTTA-----C-CTTTA-TTTTTT-T-TACACA-CTTTC--AA-AANATCAT--AGTGT-N--GA-AA--AATCCCCAGA-G--GGG---------GGA-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
Reference ( family-639 ) : GGGCCNTAACCNTCTAATCTCAGCCTCANACNTTTTTTGAATAACCGA-GCTTGAAAGATTTGTTATGTNANCAATCNTTTACAATCTGTTCTAATTGTGACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---AGCTT--GAAACAGATTTCTT-ACGGACTAAAGATT--------GCATT-GGAC-TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAA--AATA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TANT-GA---T--GA-ATTATTTNATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGCA--TATA---TGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--TA-ATC--AAA-GACATG-GAAA-CGN-GCCAGT-AATTAA-TA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGCTAA-TTCAAGAT-T-NTGTATTGTA--CAA-G---TCAT-------AC------TTTG-TATAAAT-GA--CCA-TT-----------CATCG-T--------A-------CGC-TTTATT-CAATA-CTNGC-A---CCT---AGCA-CCTGCC-ATA-ATT-A--TG-GC-A-----TG--TTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAATAAA-A-ATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCCT-CNATA-T--TCC-A-AAT-G-----CTCA-TC-GATGTCCTTTCTGC-AA-A-CTCT--T-AAAAGCTG-TTGCG-TTTCGT-C-T-GCA-TTA-A-TAC-A--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TTCCAAAT--GATCA-TATCTTGAAAACGC-CCC-AAC-ATGAAAAATGT-C-AAACAAC-CGC-----CGTTTA-----C-CTTTA-TTTTTTTTNTACACA-CTTTC--AA-AANATCAT--AGTGT-N--GA-AA--AATCCCCAGA-G--GGG---------GGA-GGTA-----NTGTGTTACTGG--C-CC-ACGGTCT
gi|1 : GGACCATA-CCTTCTAATCTCAGCCTCATACTTTTTTTGAA-AACCGA--TTTGAAAGATTT--TATGTAACCA-TCGTTTACAATCTGTTCTAATTGT-ACGAACAAATATTTT-TATGCTGATTTTAATTTGATGGG---AGCTT--GAAACAGATTTCTTTACGGACTAAAGATT--------GCATTTGGACCTTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAGATAAAATA----TG--TATA--CAATT-TTACGCT--ATGG-----CAGTG----TATTTATAA-----TTTATATAAATATAGAATAT-TTTCATC-AAATTACATATAGA-GA---T--GA-ATTATTTCATTGTTTT--CT-GTA-TG-TCCCAT-TTCTCTAACAAAACTAAATATTACATG----T----AT--------T------CAT--ATTTCC--C--CTATTT-TAGCT--TATA---TGC-TCCA--GA--GTCCACAAGCGTTGCTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCAA-TA-AT---AAA-AA-ATG-GAAAACGA-GCCAGT-AATTGA-TA----T-TTTAC-TTGGACGTT-ATATTTTACTAAA-GTGCTAAATTCAAGAT-T-TTGTATTATA--CAAAG---TCAT-------AC------TTTGGTATAAAT-AATACCA-TT-----------CATCG-T--------A-------CACCTTTA---CAATA-CTAGC-AA--TTT---AACA-CCTGCCCATA-ATT-A--CT-AC-A-----TG--GC-T-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-G-CAA-GGGC-AA--ACATGATTAGA-A-AAGTA--------TC-T-----C-GCA-GTCA--TGTAA-T-TGCT-ACTTTCC-A--T-AT-----GAA-TCTG-TCTC-CTATA-T--TCC-A-AATCG-----CTCA-TC-GATGTCCTTTCTGC-AATA-CTCTCTT-AAAAGCTA-TTGCG-TTCCGT-C-T-GCA-TTA-A-TA--A--A-GTA-AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TTCATAAT--GATCA-TATCTTGAAAACGC-CCC-AAC-ATAAAAAATGT-C-AAACAAC-CGT-----CGTTTA-----C-CTTTA---TTTTTTACATACA-CTTTC--AA-AAAATCAT--AGTGT-T--GA-AA--AAT-CCCAGG-G--GGG---------GGG-G
gi|10 : agatctatactttcctcaatacttaatttggtttcaatcaattaatatatgtaaaattgtatatacaaccaagcaatggaaagtgtgcgtttctgaataacaatacatcctttactatccttgTTCTATG--------TAACATAAA--GTCATCAG-AAATTAAAAAA--AAT---TATG--CAATG-TTACG-A--ATGG-----CAGTA----TATTTATATATATATTTTTAAAAATATAGAATATATTTCATCAAA-TTACA
gi|11 : TGTCCTTTCTGC-AA-A-CTAT--T-AAAAGCTA-TTGCG-T------C-T-GCA-TTA-A-TA-----A-GT--AAT------AC-AG-TATG-GAACTCAGTAAGGG-TTATAC-TGAATTC-GCCA-AAAA------T-TGAT-AAA-TT
gi|12 : TCTATG--------TAACATAAA--GTTATCAG-AAAATTAAAAA--AATA--TATA--CAATT-TTACG-TAAATGG-----CACTA----TATTTATCT-----TTTTTATAAATATAGATTATATTTCATC-AA-
gi|13 : CACA-CTTTC--AA-AATATCAT--AGTGT-A--GA-AA--A-TCCCCAGA-G--GGG---------TGA-GGCA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|14 : TTCCTC-AA-TTACAT-TATTTGA---TT-AA-ATTATTTCATTGTTAT-T---ATA-TA-CCCCAT-T-CTCTA-CAG--C
gi|15 : -------AC------TTTG-TAGAAATTGA--CCG-TT-----------CATCG-C--------A-------CGC-TTTATT-CAATA-C
gi|16 : GAATGTAAGGT--CAA-T-GGCAG-GG-C-AA--ACATGATTAGA-A-Act
gi|2 : GA-CAAGT-CTTTATA-GCTGATTTTAATTTGATGAGTTAGGCTTATGAAACAGAGTGCCT-A------AAATGTTTTTCTTATGCATT-GGAC-TTTATGT--ACGATAATCGTTAACATAAAATGTCATCAGGAAAATAAAAAAGAAACAGCTATAATTAATTGTTACGAT--ATGGGCAAGCACTAATATTATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-ATTCAT-AAAT-GAAATTAAGA-ATTATTCAGTTGTTTT-TAT-ATAATGGTCCCAT-T-CTCTATCTG--CTAAATA-----T-----T----AT--------TCTGTATTATTCATTTCT--CATCTATTTGCAGC---TATAATTTAT-CCCAACGAACGTCCACGAGCGTT-CCCTTGGCTGATGTGTGA---TACGCATTAA-TGA-CCTCTAAGTACATC--AA----CATGCGAAA-CAA-GCCAGTTAATTAA-TA----T-TTCAGATTGGAAGTT-ATATTA-ACTTAGAGTGCTAA-TTCAAGATAT-GTGTATTATAGTCAA-AGATTCAT-------ACA-----CTTG-TATAAAT-AA--CCAGTTA----------CATCG------------------CAC-CTTACT-ACATAGCTTGC-GAAGCCTTTTATCATCCCACC-ATA-CGT-AG-TG-GC-AATCAATGA-TTAT-A----AGGTACG----ATA-C-AGTTTTGGAACTGAATGGTAGCAA-TTGGCAA-GG-C-AACAAC-CGAGGAGA-A-ATGTA--------TC-T-----C-GCAAGTCAAATCTAT-TCTGCT-ACTTTCC-------T-----G-T-TCTC-TC-T-CTATT-C--TCA-A-AAT-G-----CTAAATCTGATGTC-----TGC-AA-AACTCT----AAAAGCTA-TTGCG-TTCCGT-CCT-GCAGTTA-A-TAC-A--G-GT--AATTATGTTGCTAA-TATG-GAACACAGTAAGG--TTATAC-TGAATTT-GCCA-AAAAAATAATC-TGAT-ATC-TTTCAAATTAAATCA-TATCTTGAAA-CGC-CCC-AACCAT-AGAAATGTGC-AAACATT-CGCGTGCGTGTTTGTGAGCC-CCTTA-TTCTGTGTCGACAC--CTTTCCAAA-AATATCATTGAGTGT-GTAGAGAA--AATCCCCAGA-GAGGGGGTTTGGGGAGGA-GGGACGTGTATGTGTTACTGGAACGCC-ACGGT
gi|3 : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTGTTTTGAA-AACCGAAGCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---AGCTT--GGAACAGATTTCTTTACGGACTAAAGATT--------GCAT--GGA--TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAATA--TGTA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCG-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TATT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGCACGTATA---TGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATCAA-TGGGCCTCCA--TA-ATC--AAA-GA-ATG-GAAA-CGA-GCCAGT-AATTGA-TAGGCCTATTTACATTGGAAGTT-ATATTT-ACTAAA-GTGCTAA-TTCAAGAT-T-GTGTATTATA--CAA-G---TCAT-------AC------TTTG-TATAAA--AA--CCA-TT-----------CATCG-T--------A-------CA--TTTATTCCAATA-CTAGC-A---CTT---AGCA-CCTGCC-ATA-ATTAA--TG-AC-A-----TGGCTTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAATAAA-A-ATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-TT-----GAT-CCTG-TCCT-TAATA-C--GCC-A-AAT-G-----CTCA-TC-GATGTCCTTTCTGC-AA-A-CTCT--T-AACAGCTA-TTGCG-TTCCGT-C-T-GCA-TTA-A-T---A--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TGATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-TAGAT--GATCA-TATCTTGAAAACGC-GCC-AAC-AT-AAATATGT-C-AAACAAC-CGT-----CGTTTA-----C-CTTTATTTTTTTTTTTACACA-CTTTC--AAGAAAATCAT--AGTGT-T--GA-AA--AATCCCCAGA-G--GGG---------GGA-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|4 : GGGCTCTAACCATTTAATCTCAGCTTCAAA-ATTTTTTGAATAACTGA-GCTTGAAAGATTTGTTATGTCAGCAATCCTTT-CAAT-TGTTCTAATTGTGACGA-CAAAT--TTT-TATGCTGATTTTTATTTTATGGGA--AGCTT--GAAACAGATTTCTT-ACGGACTAAAGATTG-------GCAAT-GGGT-TTTTTTTCTACG--------TCACATAAA--GT-AT-AG--AAAT-AAAAT--AGTA--TA-A--CAATT-TTACG-T--ATGG-----C-GTA----TATTTATCT-----TTTATATAAATATAG-ATATATTTCATA-AA-TTACAT-T--T-GA---T--GATATTATTTAATTGTTTTGTCTGGTATTG-T-TCATAT-CTCTG-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATT-----A--CTATTT-T-GCAT-TATA---TGC-TC--AAGA--GTCCAT-AGCGTT-CTTTTTGCTGAT---T-ATATTATACATTAA-TGGG-CTCCA--C--ATCATAAA-GA-ATG-G-AA-CG--GCCAGT-AATTAAGTA----C-TTTA-ATT-GAAGTT-ATATTT-ACTAAG---GCTAA--TCAAGAT-T-GTATATTATC--CAA-G---TCAT-------AC------TTTA-TATAATT-AA----A-TTGGTCTGAACTACATCG-TTGTTTTTCAGACTATCCAC-TTTATT-CAAT---TAG--A---CAT---AGCA-ATTG-C-ATG-AT--------AC-A-----TG--TTATAATATTAGGTG-GTGGAATA-AGAGTTTTGGGAATGTAAAGT--CAA-T-GACAAGGG-CAAA--ACATG-ATAAA-A-ATGTA--------TCTT-----C-GCA-GTCA--T-TAA-TGTGCT-ATATTCC-A--T-ACACTCGGAT-CCAGCTCCT-
gi|5 : aggcttatacttcctcaatactgtaatgtttgtttcaatcattaatatgtgtaaatccataaattgacataaatgcaatggaaagtatgcgtttcggaatacaataatgtttgtactatcctt--CTAAATA----ATGATAATGGCAAT--------T------TAT--ATTTCCACC--CTATTT-TAGCAA-TTTA---TGCCTCCAAAGC--ATCCATGCACTTTTCTTTTTGCTGAT---T-A---TAT-CATTAAATGGGCTCACA--TA-CTT--AAATGACATG-GAAG-CCCTGCCAGT-AATTA--CA----T-TTTACATTGGAA-TT-ATATTT-ACTAAG-GTGTTAA-CTCAAGAT-T-CTGTATTGTA--CAAAG---TCATCACATGTAC------TTTG-TAGAAAT-GA--CC--TT-----------CATCT-T--------A-------CGC-TTTAT--CAATA-CTTGCCA---CCT---AGCA-CCTGCC-A---ATA-A--TGTGC-A-----TG--T----------------------A-A-GGCT-----------AGGT--CAA-T-G-CAA-GG-C-AC--AAATGAAAAAATA-ATATGAAGAATTTTC-T-----T-GCA-GTCA--TGTA--TGTGCTTACTTTCCCACCT-AT-----GAT-ACTG-TTCTTCTATA-TG-TCT-ATAAT-GTATTGCTCA-TC-GATGTCCTTTCTGC-AA-A-CTCT--TTAAAAGCTG-TTGTAATTTCGT-C-T-GCA-TTA-AATAC-A--AAGT--AAT------GC-GG-TATGCGAACACAGTAATGGCTTATAC-TGAATTT-GCCA-AAA-------T-TGAT-AAAATTCAAGAT--GATCAATATCTTGAAAACGC-CCCAAAC-ATG-AAATTGT-CAAAACAAC-TGC-----CGTTTA-----CACTTTA-TTTTT----TAC-CACCTTTCAAAA-AAGATCAT--AGTGA-A--GA-AA--AAT-CCTAGA-G--GGG---------GGGCGGTA-----TTGTGTTACTGG--C-CCGATGGTCTtctctctaaatttccta
gi|6 : --CTAAATA----AT-----G----ATAAATGGCAT------TAT--ATTTCC--C---TATTT-TAGCA--TTTA---TGC-TCCAA-GA--ATCCATGCACTTT-CTTTT-GCTGAT---T-A---TATA-ATTAA-TGGGCCTCCA--TA--TT--AAA-GACATG-GAAG-CCT-GC-AGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGTTAA-CTCAA-AT-T-CTGTATTGTA--CAAAG---TCAT-------ACATGTACTTTG-TAGAAATTGA--C---TT-----------CATCT-T--------A-------CGC-TTTATT-CAATA-CTTGC-A---CCT---AGCA-CCTGCC-ATA-ATT-------GC-A-----TG--T------------------------A-AGCT-----------AGGT--CAA-T-GGCAA-GG-C-AC--AAATGAAAAAA-A-ATGAAAAAAT---TT-T-----CTGCA-GTC---TGTAAATGTGCT-ACTTTCC-A--T-ATAA---GAT-ACTG-TCTT-CTATA-TATTCT-A-AAT-GTATTGCTCA-TC-GATGTCCTTTCTGC-AA-A-CTCT--T-AAAAGCTG-TTGTA-TTTCGTCC-T-GCA-TTA-A-TACAA--A-GT--AA-------GC-GG-TATG-GAACACAGTAATGG-CTATAC-TGAATTT-GCC--AAAA------T-TGAT-AAA-TT-CAAAT--GATCA-TATCTTGAAAACGCGCCC-AAC-ATG-AAATTGT-C-AAACACA-TGC-----CGTTTA-----C-CTTTA-TTTTT----TACACA-CTTTC--AA-AA-ATCAT--A-TGTAA--GA-AA--AATCCCTAGAGG--GGG---------GGA-GGT------TTGTGTTACTGG--C-CC-ATGGT
gi|7 : TTAA-CA----T-TTTGCAT-GGAAGTTTATATTT-ACCTAG-GTGTTAA-TTCAAGAT-TGCTGTACTGTA--CAA-G---TCATACATGTAAC------TTTGTTAGAAAT-TA--C---TT-----------CATCGTT--------A-------CGC-TTTATT-CAATA-CTTGC-A---CCT---A-CA--CTGCC-ATAGATT-C--T--GC-A-----TG--TATT-CTA-TGAG-A-G----ATGTA-AGCT-----------AGGT--CAATT-GGCAA-GGCC-AC--AAATAAAAAAA-G-ATA-A--------TC-TTGGAAT-GCA-GTCA--TG-AA-AGTGGC-A-TTTTC-A--TAAT-----GATACTTG-CCTT-CTATAGT--TCCTA-AAT-GTATTTTTCA--C-GATGTCCTTTCTGCAAA-A-CTCT--T-AAAAGCTGCTTGTA-TTTCGT-C-TAGCT-TTGCA-TAC-AAGA-GTAAAAT------GC-GGTTATG-GAACACAGTAA-GG-CTATACTTGAATTTGGCCAGAAAA------TATGATAAAA-TTC---------------------AAACGC-CCC-AAC-AT-AAAATTGT-C-AAACAACTTGT-----CG-TTA-----C-C-TTA-TTTTT----TACACA-CTTTC--AA-AATATCAT--AGTGT-C--AG-AACCAAT-CCTAGA-G--
gi|8 : TATT-CAATA-CTAGC-A---CAT---AGCA-CCTGCC-ATG-ATC-ACATG-GCTA-----TA--T-AT-AT--TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GACAA-GG-C-AA--ACATGAATAAA-AAATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCCT-CTATA-T--TCC-A-AAT-G-----CTCA-TC-GATGTCCATTCTGC-
gi|9 : CCCAT-T-CCCTA-CAG--CTAAATC----AT-----T----AT--------T------CAT--AGTTCC--C--CTAGTT-TAGCA--CTTA---TGC-TCCAAAGA--GTCCACGAACGTT-CATTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--
Alignments
lowQualScore : 1 1 1 22 11 1 1 1 11 1 22222 11 1 444444444444 11 11 22222222 11111111 1111 11111 1111 11111 111111 222222 11111 1 1 333333333333333333333333333333333 2222222 1 111 111 1111111111 1 111 1111 333333333333333 1 3333333333333333333333 333333333333333333 111 555555555555555555555555555555555555555555 33333333 11111 11111 1111 44444444 11 1 11111 11 111111 111111 11 1 11111 11111 33333 11 1111 1 33333333333333333333333 11
lowQualScore : 3 3 3 00 88 3 7 6 3 0 66 0 3 22222 33 5 2 444444444444 33 66 44444444 99 1 6 3 77777777 99 6 7777 66666 4444 66666 5 5 333333 444444 8 77777 6 8 6 6 3 66 777777777777777777777777777777777 77 99999 5 6666666 1 5 4 77 1 1 000 5 000 0 5 9999999999 6 5 6 6 555 6 5 2222 5 0 5 5 5 88 5 66 77 8 77 222222222222222 0 1 1111111111111111111111 222222222222222222 5 4 4 1 5 333 0 888 1 5 5 5 999999999999999999999999999999999999999999 5 5 9 0 1 1 66 4 4 4 4 8 4 66 1 4 4 0 00000000 5 22222 5 5 66 55 5 9999 5 99999 55 5 77 5 3333 5 5 5 66666666 1 5 5 33 5 5 5 0 1 5 5 5 5 55555 5 33 666666 5 5 5 4 5 5 5 5 666666 5 5 5 55 99 6 6 6 6 7 44 6 6 6 66666 66666 6 1 00000 99 5 55 5 6 77 4444 5 77 1 5 55555555555555555555555 11 8 8
lowQualScore : . . . .. .. . . . . . .. . . ..... .. . . ............ .. .. ........ .. . . . ........ .. . .... ..... .... ..... . . ...... ...... . ..... . . . . . .. ................................. .. ..... . ....... . . . .. . . ... . ... . . .......... . . . . ... . . .... . . . . . .. . .. .. . .. ............... . . ...................... .................. . . . . . ... . ... . . . . .......................................... . . . . . . .. . . . . . . .. . . . . ........ . ..... . . .. .. . .... . ..... .. . .. . .... . . . ........ . . . .. . . . . . . . . . ..... . .. ...... . . . . . . . . ...... . . . .. .. . . . . . .. . . . ..... ..... . . ..... .. . .. . . .. .... . .. . . ....................... .. . .
lowQualScore : 3 3 3 00 33 3 3 7 3 0 55 0 2 22222 88 5 5 888888888888 22 55 22222222 22 0 7 5 00000000 22 7 8888 77777 2222 77777 7 7 000000 000000 0 66666 0 0 7 7 3 99 999999999999999999999999999999999 99 33333 7 1111111 0 7 9 99 4 4 000 7 000 1 7 9999999999 7 0 7 7 222 7 7 1111 7 7 7 7 7 00 7 77 99 4 99 999999999999999 0 0 6666666666666666666666 444444444444444444 0 4 4 0 0 888 2 888 4 0 0 0 555555555555555555555555555555555555555555 0 0 4 1 7 9 11 4 4 7 4 9 4 11 0 4 4 4 66666666 0 55555 0 0 99 44 0 0000 0 44444 22 0 22 0 5555 0 0 0 77777777 4 0 7 66 7 7 7 4 4 7 7 7 7 99999 7 66 444444 7 7 7 3 7 7 7 7 444444 7 7 7 00 22 7 7 7 7 7 55 7 7 7 77777 77777 7 7 22222 22 7 77 7 6 99 6666 7 99 4 7 33333333333333333333333 00 0 0
consensus : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTTTTTTGAA-AACCGA-GCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATT-GGAC-TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAA--AATA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TANT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGC----A--TNTATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--TA-ATC--AAA-GACATG-GAAA-CGA-GCCAGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGCTAA-TTCAAGAT-T-NTGTATTGTA--CAAAG--TCAT-------AC------TTTG-TANAAAT-GA--CCA-TT-----------CATCG-T--------A-------CGC-TTTATT-CAATA-CTNGC-A---CCT---AGCA-CCTGCC-ATA-ATT-A--TG-GC-A-----TG--TTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAANAAA-A-ATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TCC-A-AAT-GT--A-TT-CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGCG-TTCCGTC-T-GCA-TTA-A-TAC-A--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TTC-AAAT--GATCA-TATCTTGAAAACGC-CCCAA-C-ATGAAAANTGT-CAAA-CAAC-CGC-----CGTTTA-----C-CTTTA---TTTTTTTT--ACACA-CTTTC--AA-AANATCAT--AGTGT-N--GA-AA--AATCCCCAGA-GGGGGG-----------A-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
Reference ( family-639 ) : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTTTTTTGAA-AACCGA-GCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATT-GGAC-TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAA--AATA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TANT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGC----A--TNTATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--TA-ATC--AAA-GACATG-GAAA-CGA-GCCAGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGCTAA-TTCAAGAT-T-NTGTATTGTA--CAAAG--TCAT-------AC------TTTG-TANAAAT-GA--CCA-TT-----------CATCG-T--------A-------CGC-TTTATT-CAATA-CTNGC-A---CCT---AGCA-CCTGCC-ATA-ATT-A--TG-GC-A-----TG--TTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAANAAA-A-ATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TCC-A-AAT-GT--A-TT-CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGCG-TTCCGTC-T-GCA-TTA-A-TAC-A--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TTCNAAAT--GATCA-TATCTTGAAAACGC-CCCAA-C-ATGAAAANTGT-CAAA-CAAC-CGC-----CGTTTA-----C-CTTTA---TTTTTTTT--ACACA-CTTTC--AA-AANATCAT--AGTGT-N--GA-AA--AATCCCCAGA-GGGGGG-----------A-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|1 : GGACCATA-CCTTCTAATCTCAGCCTCATACTTTTTTTGAA-AACCGA--TTTGAAAGATTT--TATGTAACCA-TCGTTTACAATCTGTTCTAATTGT-ACGAACAAATATTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATTTGGACCTTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAGATAAAATA----TG--TATA--CAATT-TTACGCT--ATGG-----CAGTG----TATTTATAA-----TTTATATAAATATAGAATAT-TTTCATC-AAATTACATATAGA-GA---T--GA-ATTATTTCATTGTTTT--CT-GTA-TG-TCCCAT-TTCTCTAACAAAACTAAATATTACATG----T----AT--------T------CAT--ATTTCC--C--CTATTT-TAGC----T--TATATGC-TCCA--GA--GTCCACAAGCGTTGCTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCAA-TA-AT---AAA-AA-ATG-GAAAACGA-GCCAGT-AATTGA-TA----T-TTTAC-TTGGACGTT-ATATTTTACTAAA-GTGCTAAATTCAAGAT-T-TTGTATTATA--CAAAG--TCAT-------AC------TTTGGTATAAAT-AATACCA-TT-----------CATCG-T--------A-------CACCTTTA---CAATA-CTAGC-AA--TTT---AACA-CCTGCCCATA-ATT-A--CT-AC-A-----TG--GC-T-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-G-CAA-GGGC-AA--ACATGATTAGA-A-AAGTA--------TC-T-----C-GCA-GTCA--TGTAA-T-TGCT-ACTTTCC-A--T-AT-----GAA-TCTG-TCT-C-CTATA-T--TCC-A-AATCG--------CTCATCGATGTCCTTTCTGC-AATACTCTCTT-AAAAGCTA-TTGCG-TTCCGTC-T-GCA-TTA-A-TA--A--A-GTA-AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TTCATAAT--GATCA-TATCTTGAAAACGC-CCCAA-C-ATAAAAAATGT-CAAA-CAAC-CGT-----CGTTTA-----C-CTTTA---TTTTTTAC--ATACA-CTTTC--AA-AAAATCAT--AGTGT-T--GA-AA--AAT-CCCAGG-GGGGGG-----------G-G
gi|10 : agatctatactttcctcaatacttaatttggtttcaatcaattaatatatgtaaaattgtatatacaaccaagcaatggaaagtgtgcgtttctgaataacaatacatcctttactatccttgTTCTATG--------TAACATAAA--GTCATCAG-AAATTAAAAAA--AAT---TATG--CAATG-TTACG-A--ATGG-----CAGTA----TATTTATATATATATTTTTAAAAATATAGAATATATTTCATCAAA-TTACA
gi|11 : TGTCCTTTCTGC-AA-A--CTATT-AAAAGCTA-TTGCG-T-----C-T-GCA-TTA-A-TA-----A-GT--AAT------AC-AG-TATG-GAACTCAGTAAGGG-TTATAC-TGAATTC-GCCA-AAAA------T-TGAT-AAA-TT
gi|12 : TCTATG--------TAACATAAA--GTTATCAG-AAAATTAAAAA--AATA--TATA--CAATT-TTACG-TAAATGG-----CACTA----TATTTATCT-----TTTTTATAAATATAGATTATATTTCATC-AA-
gi|13 : CACA-CTTTC--AA-AATATCAT--AGTGT-A--GA-AA--A-TCCCCAGA-GGGGTG-----------A-GGCA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|14 : TTCCTC-AA-TTACAT-TATTTGA---TT-AA-ATTATTTCATTGTTAT-T---ATA-TA-CCCCAT-T-CTCTA-CAG--C
gi|15 : -------AC------TTTG-TAGAAATTGA--CCG-TT-----------CATCG-C--------A-------CGC-TTTATT-CAATA-C
gi|16 : GAATGTAAGGT--CAA-T-GGCAG-GG-C-AA--ACATGATTAGA-A-Act
gi|2 : GA-CAAGT-CTTTATA-GCTGATTTTAATTTGATGAGTTAG-GCTTATGAAACAGAGTGC--------CTAAA-ATGTTTTTCTTAT-GCATT-GGAC-TTTATGT--ACGATAATCGTTAACATAAAATGTCATCAGGAAAATAAAAAAGAAACAGCTATAATTAATTGTTACGAT--ATGGGCAAGCACTAATATTATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-ATTCAT-AAAT-GAAATTAAGA-ATTATTCAGTTGTTTT-TAT-ATAATGGTCCCAT-T-CTCTATCTG--CTAAATA-----T-----T----AT--------TCTGTATTATTCATTTCT--CATCTATTTGCAGCTATAA--TTTAT---CCCAACGAACGTCCACGAGCGTT-CCCTTGGCTGATGTGTGA---TACGCATTAA-TGA-CCTCTAAGTACATC--AA----CATGCGAAA-CAA-GCCAGTTAATTAA-TA----T-TTCAGATTGGAAGTT-ATATTA-ACTTAGAGTGCTAA-TTCAAGATAT-GTGTATTATAGTCAAAGATTCAT-------ACA-----CTTG-TATAAAT-AA--CCAGTTA----------CATCG------------------CAC-CTTACT-ACATAGCTTGC-GAAGCCTTTTATCATCCCACC-ATA-CGT-AG-TG-GC-AATCAATGA-TTAT-A----AGGTACG----ATA-C-AGTTTTGGAACTGAATGGTAGCAA-TTGGCAA-GG-C-AACAAC-CGAGGAGA-A-ATGTA--------TC-T-----C-GCAAGTCAAATCTAT-TCTGCT-ACTTTCC-------T-----G-T-TCTC-TC--T-CTATT-C--TCA-A-AAT-GCTAA-AT-CT----GATGTC-----TGC-AA-AA-CTCT--AAAAGCTA-TTGCG-TTCCGTCCT-GCAGTTA-A-TAC-A--G-GT--AATTATGTTGCTAA-TATG-GAACACAGTAAGG--TTATAC-TGAATTT-GCCA-AAAAAATAATC-TGAT-ATC-TTTCAAATTAAATCA-TATCTTGAAA-CGC-CCCAA-CCAT-AGAAATGTGCAAA-CATT-CGCGTGCGTGTTTGTGAGCC-CCTTA---TTCTGTGTCGACAC--CTTTCCAAA-AATATCATTGAGTGT-GTAGAGAA--AATCCCCAGA-GAGGGGGTTTGGGGAGGA-GGGACGTGTATGTGTTACTGGAACGCC-ACGGT
gi|3 : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTGTTTTGAA-AACCGAAGCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GGAACAGATTTCTTTACGGACTAAAGAT----------T-GCAT--GGA--TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAATA--TGTA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCG-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TATT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGC----ACGTATATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATCAA-TGGGCCTCCA--TA-ATC--AAA-GA-ATG-GAAA-CGA-GCCAGT-AATTGA-TAGGCCTATTTACATTGGAAGTT-ATATTT-ACTAAA-GTGCTAA-TTCAAGAT-T-GTGTATTATA--C-AAG--TCAT-------AC------TTTG-TATAAA--AA--CCA-TT-----------CATCG-T--------A-------CA--TTTATTCCAATA-CTAGC-A---CTT---AGCA-CCTGCC-ATA-ATTAA--TG-AC-A-----TGGCTTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAATAAA-A-ATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-TT-----GAT-CCTG-TCC-T-TAATA-C--GCC-A-AAT-G--------CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AACAGCTA-TTGCG-TTCCGTC-T-GCA-TTA-A-T---A--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TGATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-TAGAT--GATCA-TATCTTGAAAACGC-GCCAA-C-AT-AAATATGT-CAAA-CAAC-CGT-----CGTTTA-----C-CTTTATTTTTTTTTTT--ACACA-CTTTC--AAGAAAATCAT--AGTGT-T--GA-AA--AATCCCCAGA-GGGGGG-----------A-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|4 : GGGCTCTAACCATTTAATCTCAGCTTCAAA-ATTTTTTGAATAACTGA-GCTTGAAAGATTTGTTATGTCAGCAATCCTTT-CAAT-TGTTCTAATTGTGACGA-CAAAT--TTT-TATGCTGATTTTTATTTTATGGG---AAGCTT--GAAACAGATTTC-TTACGGACTAAAGAT----------TGGCAAT-GGGT-TTTTTTTCTACG--------TCACATAAA--GT-AT-AG--AAAT-AAAAT--AGTA--TA-A--CAATT-TTACG-T--ATGG-----C-GTA----TATTTATCT-----TTTATATAAATATAG-ATATATTTCATA-AA-TTACAT-T--T-GA---T--GATATTATTTAATTGTTTTGTCTGGTATTG-T-TCATAT-CTCTG-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATT-----A--CTATTT-T-GC----AT-TATATGC-TC--AAGA--GTCCAT-AGCGTT-CTTTTTGCTGAT---T-ATATTATACATTAA-TGGG-CTCCA--C--ATCATAAA-GA-ATG-G-AA-CG--GCCAGT-AATTAAGTA----C-TTTA-ATT-GAAGTT-ATATTT-ACTAAG---GCTAA--TCAAGAT-T-GTATATTAT---CCAAG--TCAT-------AC------TTTA-TATAATT-AA----A-TTGGTCTGAACTACATCG-TTGTTTTTCAGACTATCCAC-TTTATT-CAAT---TAG--A---CAT---AGCA-ATTG-C-ATG-AT--------AC-A-----TG--TTATAATATTAGGTG-GTGGAATA-AGAGTTTTGGGAATGTAAAGT--CAA-T-GACAAGGG-CAAA--ACATG-ATAAA-A-ATGTA--------TCTT-----C-GCA-GTCA--T-TAA-TGTGCT-ATATTCC-A--T-ACACTCGGAT-CCAGCTCCTT-CT----C--TCT-A-AAT-
gi|5 : aggcttatacttcctcaatactgtaatgtttgtttcaatcattaatatgtgtaaatccataaattgacataaatgcaatggaaagtatgcgtttcggaatacaataatgtttgtactatcctt--CTAAATA----ATGATAATGGCAAT--------T------TAT--ATTTCCACC--CTATTT-TAGC----AA-TTTATGCCTCCAAAGC--ATCCATGCACTTTTCTTTTTGCTGAT---T-A---TAT-CATTAAATGGGCTCACA--TA-CTT--AAATGACATG-GAAG-CCCTGCCAGT-AATTA--CA----T-TTTACATTGGAA-TT-ATATTT-ACTAAG-GTGTTAA-CTCAAGAT-T-CTGTATTGTA--CAAAG--TCATCACATGTAC------TTTG-TAGAAAT-GA--CC--TT-----------CATCT-T--------A-------CGC-TTTAT--CAATA-CTTGCCA---CCT---AGCA-CCTGCC-A---ATA-A--TGTGC-A-----TG--T----------------------A-A-GGCT-----------AGGT--CAA-T-G-CAA-GG-C-AC--AAATGAAAAAATA-ATATGAAGAATTTTC-T-----T-GCA-GTCA--TGTA--TGTGCTTACTTTCCCACCT-AT-----GAT-ACTG-TTC-TTCTATA-TG-TCT-ATAAT-GT--A-TTGCTCATCGATGTCCTTTCTGC-AA-A--CTCTTTAAAAGCTG-TTGTAATTTCGTC-T-GCA-TTA-AATAC-A--AAGT--AAT------GC-GG-TATGCGAACACAGTAATGGCTTATAC-TGAATTT-GCCA-AAA-------T-TGAT-AAAATTCAAGAT--GATCAATATCTTGAAAACGC-CCCAAAC-ATGAAA-TTGT-CAAAACAAC-TGC-----CGTTTA-----CACTTTA-----TTTTTT--AC-CACCTTTCAAAA-AAGATCAT--AGTGA-A--GA-AA--AAT-CCTAGA-GGGGGG-----------GCGGTA-----TTGTGTTACTGG--C-CCGATGGTCTttccta
gi|6 : --CTAAATA----AT-----G----ATAAATGGCAT------TAT--ATTTCC--C---TATTT-TAGC----A--TTTATGC-TCCAA-GA--ATCCATGCACTTT-CTTTT-GCTGAT---T-A---TATA-ATTAA-TGGGCCTCCA--TA--TT--AAA-GACATG-GAAG-CCT-GC-AGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGTTAA-CTCAA-AT-T-CTGTATTGTA--CAAAG--TCAT-------ACATGTACTTTG-TAGAAATTGA--C---TT-----------CATCT-T--------A-------CGC-TTTATT-CAATA-CTTGC-A---CCT---AGCA-CCTGCC-ATA-ATT-------GC-A-----TG--T------------------------A-AGCT-----------AGGT--CAA-T-GGCAA-GG-C-AC--AAATGAAAAAA-A-ATGAAAAAAT---TT-T-----CTGCA-GTC---TGTAAATGTGCT-ACTTTCC-A--T-ATAA---GAT-ACTG-TCT-T-CTATA-TATTCT-A-AAT-GT--A-TTGCTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGTA-TTTCGTCCT-GCA-TTA-A-TACAA--A-GT--AA-------GC-GG-TATG-GAACACAGTAATGG-CTATAC-TGAATTT-GCC--AAAA------T-TGAT-AAA-TTC-AAAT--GATCA-TATCTTGAAAACGCGCCCAA-C-ATG-AAATTGT-CAAA-CACA-TGC-----CGTTTA-----C-CTTTA-----TTTTTT--ACACA-CTTTC--AA-AA-ATCAT--A-TGTAA--GA-AA--AATCCCTAGAGGGGGGG-----------A-GGT------TTGTGTTACTGG--C-CC-ATGGT
gi|7 : TTAA-CA----T-TTTGCAT-GGAAGTTTATATTT-ACCTAG-GTGTTAA-TTCAAGAT-TGCTGTACTGTA--C-AAG--TCATACATGTAAC------TTTGTTAGAAAT-TA--C---TT-----------CATCGTT--------A-------CGC-TTTATT-CAATA-CTTGC-A---CCT---A-CA--CTGCC-ATAGATT-C--T--GC-A-----TG--TATT-CTA-TGAG-A-G----ATGTA-AGCT-----------AGGT--CAATT-GGCAA-GGCC-AC--AAATAAAAAAA-G-ATA-A--------TC-TTGGAAT-GCA-GTCA--TG-AA-AGTGGC-A-TTTTC-A--TAAT-----GATACTTG-CCT-T-CTATAGT--TCCTA-AAT-GT--ATTT-TTCA-CGATGTCCTTTCTGCAAA-A--CTCTT-AAAAGCTGCTTGTA-TTTCGTC-TAGCT-TTGCA-TAC-AAGA-GTAAAAT------GC-GGTTATG-GAACACAGTAA-GG-CTATACTTGAATTTGGCCAGAAAA------TATGATAAAA-TTC---------------------AAACGC-CCCAA-C-AT-AAAATTGT-CAAA-CAACTTGT-----CG-TTA-----C-C-TTA-----TTTTTT--ACACA-CTTTC--AA-AATATCAT--AGTGT-C--AG-AACCAAT-CCTAGA-G
gi|8 : TATT-CAATA-CTAGC-A---CAT---AGCA-CCTGCC-ATG-ATC-ACATG-GCTA-----TA--T-AT-AT--TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GACAA-GG-C-AA--ACATGAATAAA-AAATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TCC-A-AAT-G--------CTCATCGATGTCCATTCTGC-
gi|9 : CCCAT-T-CCCTA-CAG--CTAAATC----AT-----T----AT--------T------CAT--AGTTCC--C--CTAGTT-TAGC----A--CTTATGC-TCCAAAGA--GTCCACGAACGTT-CATTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--
Alignments
lowQualScore : 1 1 1 22 11 1 1 1 11 1 22222 11 1 444444444444 11 11 22222222 11111111 1111 11111 1111 11111 111111 222222 11111 1 1 333333333333333333333333333333333 2222222 1 111 111 1111111111 1 111 1111 333333333333333 1 3333333333333333333333 333333333333333333 111 555555555555555555555555555555555555555555 33333333 11111 11111 1111 44444444 11 1 111111 11 111111 2222222 111 1 11111 11111 33333 11 1111 1 33333333333333333333333 11
lowQualScore : 3 3 3 00 88 3 7 6 3 0 66 0 3 22222 33 5 2 444444444444 33 66 44444444 99 1 6 3 77777777 99 6 7777 66666 4444 66666 5 5 333333 444444 8 77777 6 8 6 6 3 66 777777777777777777777777777777777 77 99999 5 6666666 1 5 4 77 1 1 000 5 000 0 5 9999999999 6 5 6 6 555 6 5 2222 5 0 5 5 5 88 5 66 77 8 77 222222222222222 0 1 1111111111111111111111 222222222222222222 5 4 4 1 5 333 0 888 1 5 5 5 999999999999999999999999999999999999999999 5 5 9 0 1 1 66 4 4 4 4 8 4 66 1 8 0 00000000 5 22222 5 5 66 55 5 9999 5 99999 55 5 77 5 3333 5 5 5 66666666 1 5 5 33 5 5 5 0 1 5 5 5 5 444444 33 666666 5 5 5 4 5 5 5 5 1111111 5 5 5 5 000 99 6 6 6 6 7 44 6 6 6 66666 66666 6 1 00000 99 5 55 5 6 77 4444 5 77 1 5 55555555555555555555555 11 8 8
lowQualScore : . . . .. .. . . . . . .. . . ..... .. . . ............ .. .. ........ .. . . . ........ .. . .... ..... .... ..... . . ...... ...... . ..... . . . . . .. ................................. .. ..... . ....... . . . .. . . ... . ... . . .......... . . . . ... . . .... . . . . . .. . .. .. . .. ............... . . ...................... .................. . . . . . ... . ... . . . . .......................................... . . . . . . .. . . . . . . .. . . . ........ . ..... . . .. .. . .... . ..... .. . .. . .... . . . ........ . . . .. . . . . . . . . . ...... .. ...... . . . . . . . . ....... . . . . ... .. . . . . . .. . . . ..... ..... . . ..... .. . .. . . .. .... . .. . . ....................... .. . .
lowQualScore : 3 3 3 00 33 3 3 7 3 0 55 0 2 22222 88 5 5 888888888888 22 55 22222222 22 0 7 5 00000000 22 7 8888 77777 2222 77777 7 7 000000 000000 0 66666 0 0 7 7 3 99 999999999999999999999999999999999 99 33333 7 1111111 0 7 9 99 4 4 000 7 000 1 7 9999999999 7 0 7 7 222 7 7 1111 7 7 7 7 7 00 7 77 99 4 99 999999999999999 0 0 6666666666666666666666 444444444444444444 0 4 4 0 0 888 2 888 4 0 0 0 555555555555555555555555555555555555555555 0 0 4 1 7 9 11 4 4 7 4 9 4 11 0 9 4 66666666 0 55555 0 0 99 44 0 0000 0 44444 22 0 22 0 5555 0 0 0 77777777 4 0 7 66 7 7 7 4 4 7 7 7 7 777777 66 444444 7 7 7 3 7 7 7 7 4444444 7 7 7 7 888 22 7 7 7 7 7 55 7 7 7 77777 77777 7 7 22222 22 7 77 7 6 99 6666 7 99 4 7 33333333333333333333333 00 0 0
consensus : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTTTTTTGAA-AACCGA-GCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATT-GGAC-TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAA--AATA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TANT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGC----A--TNTATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--TA-ATC--AAA-GACATG-GAAA-CGA-GCCAGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGCTAA-TTCAAGAT-T-NTGTATTGTA--CAAAG--TCAT-------AC------TTTG-TANAAAT-GA--CCA-TT-----------CATCG-T--------A-------CGC-TTTATT-CAATA-CTNGC-A---CCT---AGCA-CCTGCC-ATA-ATT-A--TG-GC-A-----TG--TTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAANAAA-AATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TCC-A-AAT-GT--A-TT-CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGCG-TTCCGTC-T-GCA-TTA-A-TACA--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-CA-A-AT--GATCA-TATCTTGAAAACGC-CCCAA-C-ATGAAAANTGT-CAAA-CAAC-CGC-----CGTTTA-----C-CTTTA---TTTTTTTT--ACACA-CTTTC--AA-AANATCAT--AGTGT-N--GA-AA--AATCCCCAGA-GGGGGG-----------A-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
Reference ( family-639 ) : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTTTTTTGAA-AACCGA-GCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATT-GGAC-TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAA--AATA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TANT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGC----A--TNTATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--TA-ATC--AAA-GACATG-GAAA-CGA-GCCAGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGCTAA-TTCAAGAT-T-NTGTATTGTA--CAAAG--TCAT-------AC------TTTG-TANAAAT-GA--CCA-TT-----------CATCG-T--------A-------CGC-TTTATT-CAATA-CTNGC-A---CCT---AGCA-CCTGCC-ATA-ATT-A--TG-GC-A-----TG--TTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAANAAA-AATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TCC-A-AAT-GT--A-TT-CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGCG-TTCCGTC-T-GCA-TTA-A-TACA--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-CA-A-AT--GATCA-TATCTTGAAAACGC-CCCAA-C-ATGAAAANTGT-CAAA-CAAC-CGC-----CGTTTA-----C-CTTTA---TTTTTTTT--ACACA-CTTTC--AA-AANATCAT--AGTGT-N--GA-AA--AATCCCCAGA-GGGGGG-----------A-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|1 : GGACCATA-CCTTCTAATCTCAGCCTCATACTTTTTTTGAA-AACCGA--TTTGAAAGATTT--TATGTAACCA-TCGTTTACAATCTGTTCTAATTGT-ACGAACAAATATTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATTTGGACCTTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAGATAAAATA----TG--TATA--CAATT-TTACGCT--ATGG-----CAGTG----TATTTATAA-----TTTATATAAATATAGAATAT-TTTCATC-AAATTACATATAGA-GA---T--GA-ATTATTTCATTGTTTT--CT-GTA-TG-TCCCAT-TTCTCTAACAAAACTAAATATTACATG----T----AT--------T------CAT--ATTTCC--C--CTATTT-TAGC----T--TATATGC-TCCA--GA--GTCCACAAGCGTTGCTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCAA-TA-AT---AAA-AA-ATG-GAAAACGA-GCCAGT-AATTGA-TA----T-TTTAC-TTGGACGTT-ATATTTTACTAAA-GTGCTAAATTCAAGAT-T-TTGTATTATA--CAAAG--TCAT-------AC------TTTGGTATAAAT-AATACCA-TT-----------CATCG-T--------A-------CACCTTTA---CAATA-CTAGC-AA--TTT---AACA-CCTGCCCATA-ATT-A--CT-AC-A-----TG--GC-T-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-G-CAA-GGGC-AA--ACATGATTAGA-AAAGTA--------TC-T-----C-GCA-GTCA--TGTAA-T-TGCT-ACTTTCC-A--T-AT-----GAA-TCTG-TCT-C-CTATA-T--TCC-A-AATCG--------CTCATCGATGTCCTTTCTGC-AATACTCTCTT-AAAAGCTA-TTGCG-TTCCGTC-T-GCA-TTA-A-TA-A--A-GTA-AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-CATA-AT--GATCA-TATCTTGAAAACGC-CCCAA-C-ATAAAAAATGT-CAAA-CAAC-CGT-----CGTTTA-----C-CTTTA---TTTTTTAC--ATACA-CTTTC--AA-AAAATCAT--AGTGT-T--GA-AA--AAT-CCCAGG-GGGGGG-----------G-G
gi|10 : agatctatactttcctcaatacttaatttggtttcaatcaattaatatatgtaaaattgtatatacaaccaagcaatggaaagtgtgcgtttctgaataacaatacatcctttactatccttgTTCTATG--------TAACATAAA--GTCATCAG-AAATTAAAAAA--AAT---TATG--CAATG-TTACG-A--ATGG-----CAGTA----TATTTATATATATATTTTTAAAAATATAGAATATATTTCATCAAA-TTACA
gi|11 : TGTCCTTTCTGC-AA-A--CTATT-AAAAGCTA-TTGCG-T-----C-T-GCA-TTA-A-TA----A-GT--AAT------AC-AG-TATG-GAACTCAGTAAGGG-TTATAC-TGAATTC-GCCA-AAAA------T-TGAT-AAA-TT-
gi|12 : TCTATG--------TAACATAAA--GTTATCAG-AAAATTAAAAA--AATA--TATA--CAATT-TTACG-TAAATGG-----CACTA----TATTTATCT-----TTTTTATAAATATAGATTATATTTCATC-AA-
gi|13 : CACA-CTTTC--AA-AATATCAT--AGTGT-A--GA-AA--A-TCCCCAGA-GGGGTG-----------A-GGCA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|14 : TTCCTC-AA-TTACAT-TATTTGA---TT-AA-ATTATTTCATTGTTAT-T---ATA-TA-CCCCAT-T-CTCTA-CAG--C
gi|15 : -------AC------TTTG-TAGAAATTGA--CCG-TT-----------CATCG-C--------A-------CGC-TTTATT-CAATA-C
gi|16 : GAATGTAAGGT--CAA-T-GGCAG-GG-C-AA--ACATGATTAGA-AAct
gi|2 : GA-CAAGT-CTTTATA-GCTGATTTTAATTTGATGAGTTAG-GCTTATGAAACAGAGTGC--------CTAAA-ATGTTTTTCTTAT-GCATT-GGAC-TTTATGT--ACGATAATCGTTAACATAAAATGTCATCAGGAAAATAAAAAAGAAACAGCTATAATTAATTGTTACGAT--ATGGGCAAGCACTAATATTATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-ATTCAT-AAAT-GAAATTAAGA-ATTATTCAGTTGTTTT-TAT-ATAATGGTCCCAT-T-CTCTATCTG--CTAAATA-----T-----T----AT--------TCTGTATTATTCATTTCT--CATCTATTTGCAGCTATAA--TTTAT---CCCAACGAACGTCCACGAGCGTT-CCCTTGGCTGATGTGTGA---TACGCATTAA-TGA-CCTCTAAGTACATC--AA----CATGCGAAA-CAA-GCCAGTTAATTAA-TA----T-TTCAGATTGGAAGTT-ATATTA-ACTTAGAGTGCTAA-TTCAAGATAT-GTGTATTATAGTCAAAGATTCAT-------ACA-----CTTG-TATAAAT-AA--CCAGTTA----------CATCG------------------CAC-CTTACT-ACATAGCTTGC-GAAGCCTTTTATCATCCCACC-ATA-CGT-AG-TG-GC-AATCAATGA-TTAT-A----AGGTACG----ATA-C-AGTTTTGGAACTGAATGGTAGCAA-TTGGCAA-GG-C-AACAAC-CGAGGAGA-AATGTA--------TC-T-----C-GCAAGTCAAATCTAT-TCTGCT-ACTTTCC-------T-----G-T-TCTC-TC--T-CTATT-C--TCA-A-AAT-GCTAA-AT-CT----GATGTC-----TGC-AA-AA-CTCT--AAAAGCTA-TTGCG-TTCCGTCCT-GCAGTTA-A-TACA--G-GT--AATTATGTTGCTAA-TATG-GAACACAGTAAGG--TTATAC-TGAATTT-GCCA-AAAAAATAATC-TGAT-ATC-TTTCA-A-ATTAAATCA-TATCTTGAAA-CGC-CCCAA-CCAT-AGAAATGTGCAAA-CATT-CGCGTGCGTGTTTGTGAGCC-CCTTA---TTCTGTGTCGACAC--CTTTCCAAA-AATATCATTGAGTGT-GTAGAGAA--AATCCCCAGA-GAGGGGGTTTGGGGAGGA-GGGACGTGTATGTGTTACTGGAACGCC-ACGGT
gi|3 : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTGTTTTGAA-AACCGAAGCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GGAACAGATTTCTTTACGGACTAAAGAT----------T-GCAT--GGA--TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAATA--TGTA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCG-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TATT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGC----ACGTATATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATCAA-TGGGCCTCCA--TA-ATC--AAA-GA-ATG-GAAA-CGA-GCCAGT-AATTGA-TAGGCCTATTTACATTGGAAGTT-ATATTT-ACTAAA-GTGCTAA-TTCAAGAT-T-GTGTATTATA--C-AAG--TCAT-------AC------TTTG-TATAAA--AA--CCA-TT-----------CATCG-T--------A-------CA--TTTATTCCAATA-CTAGC-A---CTT---AGCA-CCTGCC-ATA-ATTAA--TG-AC-A-----TGGCTTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAATAAA-AATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-TT-----GAT-CCTG-TCC-T-TAATA-C--GCC-A-AAT-G--------CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AACAGCTA-TTGCG-TTCCGTC-T-GCA-TTA-A-T--A--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TGATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-TA-G-AT--GATCA-TATCTTGAAAACGC-GCCAA-C-AT-AAATATGT-CAAA-CAAC-CGT-----CGTTTA-----C-CTTTATTTTTTTTTTT--ACACA-CTTTC--AAGAAAATCAT--AGTGT-T--GA-AA--AATCCCCAGA-GGGGGG-----------A-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|4 : GGGCTCTAACCATTTAATCTCAGCTTCAAA-ATTTTTTGAATAACTGA-GCTTGAAAGATTTGTTATGTCAGCAATCCTTT-CAAT-TGTTCTAATTGTGACGA-CAAAT--TTT-TATGCTGATTTTTATTTTATGGG---AAGCTT--GAAACAGATTTC-TTACGGACTAAAGAT----------TGGCAAT-GGGT-TTTTTTTCTACG--------TCACATAAA--GT-AT-AG--AAAT-AAAAT--AGTA--TA-A--CAATT-TTACG-T--ATGG-----C-GTA----TATTTATCT-----TTTATATAAATATAG-ATATATTTCATA-AA-TTACAT-T--T-GA---T--GATATTATTTAATTGTTTTGTCTGGTATTG-T-TCATAT-CTCTG-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATT-----A--CTATTT-T-GC----AT-TATATGC-TC--AAGA--GTCCAT-AGCGTT-CTTTTTGCTGAT---T-ATATTATACATTAA-TGGG-CTCCA--C--ATCATAAA-GA-ATG-G-AA-CG--GCCAGT-AATTAAGTA----C-TTTA-ATT-GAAGTT-ATATTT-ACTAAG---GCTAA--TCAAGAT-T-GTATATTAT---CCAAG--TCAT-------AC------TTTA-TATAATT-AA----A-TTGGTCTGAACTACATCG-TTGTTTTTCAGACTATCCAC-TTTATT-CAAT---TAG--A---CAT---AGCA-ATTG-C-ATG-AT--------AC-A-----TG--TTATAATATTAGGTG-GTGGAATA-AGAGTTTTGGGAATGTAAAGT--CAA-T-GACAAGGG-CAAA--ACATG-ATAAA-AATGTA--------TCTT-----C-GCA-GTCA--T-TAA-TGTGCT-ATATTCC-A--T-ACACTCGGAT-CCAGCTCCTT-CT----C--TCT-A-AAT-
gi|5 : aggcttatacttcctcaatactgtaatgtttgtttcaatcattaatatgtgtaaatccataaattgacataaatgcaatggaaagtatgcgtttcggaatacaataatgtttgtactatcctt--CTAAATA----ATGATAATGGCAAT--------T------TAT--ATTTCCACC--CTATTT-TAGC----AA-TTTATGCCTCCAAAGC--ATCCATGCACTTTTCTTTTTGCTGAT---T-A---TAT-CATTAAATGGGCTCACA--TA-CTT--AAATGACATG-GAAG-CCCTGCCAGT-AATTA--CA----T-TTTACATTGGAA-TT-ATATTT-ACTAAG-GTGTTAA-CTCAAGAT-T-CTGTATTGTA--CAAAG--TCATCACATGTAC------TTTG-TAGAAAT-GA--CC--TT-----------CATCT-T--------A-------CGC-TTTAT--CAATA-CTTGCCA---CCT---AGCA-CCTGCC-A---ATA-A--TGTGC-A-----TG--T----------------------A-A-GGCT-----------AGGT--CAA-T-G-CAA-GG-C-AC--AAATGAAAAAATAATATGAAGAATTTTC-T-----T-GCA-GTCA--TGTA--TGTGCTTACTTTCCCACCT-AT-----GAT-ACTG-TTC-TTCTATA-TG-TCT-ATAAT-GT--A-TTGCTCATCGATGTCCTTTCTGC-AA-A--CTCTTTAAAAGCTG-TTGTAATTTCGTC-T-GCA-TTA-AATACA--AAGT--AAT------GC-GG-TATGCGAACACAGTAATGGCTTATAC-TGAATTT-GCCA-AAA-------T-TGAT-AAAATT-CA-AGAT--GATCAATATCTTGAAAACGC-CCCAAAC-ATGAAA-TTGT-CAAAACAAC-TGC-----CGTTTA-----CACTTTA-----TTTTTT--AC-CACCTTTCAAAA-AAGATCAT--AGTGA-A--GA-AA--AAT-CCTAGA-GGGGGG-----------GCGGTA-----TTGTGTTACTGG--C-CCGATGGTCTttccta
gi|6 : --CTAAATA----AT-----G----ATAAATGGCAT------TAT--ATTTCC--C---TATTT-TAGC----A--TTTATGC-TCCAA-GA--ATCCATGCACTTT-CTTTT-GCTGAT---T-A---TATA-ATTAA-TGGGCCTCCA--TA--TT--AAA-GACATG-GAAG-CCT-GC-AGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGTTAA-CTCAA-AT-T-CTGTATTGTA--CAAAG--TCAT-------ACATGTACTTTG-TAGAAATTGA--C---TT-----------CATCT-T--------A-------CGC-TTTATT-CAATA-CTTGC-A---CCT---AGCA-CCTGCC-ATA-ATT-------GC-A-----TG--T------------------------A-AGCT-----------AGGT--CAA-T-GGCAA-GG-C-AC--AAATGAAAAAA-AATGAAAAAAT---TT-T-----CTGCA-GTC---TGTAAATGTGCT-ACTTTCC-A--T-ATAA---GAT-ACTG-TCT-T-CTATA-TATTCT-A-AAT-GT--A-TTGCTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGTA-TTTCGTCCT-GCA-TTA-A-TACA--AAGT--AA-------GC-GG-TATG-GAACACAGTAATGG-CTATAC-TGAATTT-GCCA-AAA-------T-TGAT-AAA-TT-CA-A-AT--GATCA-TATCTTGAAAACGCGCCCAA-C-ATG-AAATTGT-CAAA-CACA-TGC-----CGTTTA-----C-CTTTA-----TTTTTT--ACACA-CTTTC--AA-AA-ATCAT--A-TGTAA--GA-AA--AATCCCTAGAGGGGGGG-----------A-GGT------TTGTGTTACTGG--C-CC-ATGGT
gi|7 : TTAA-CA----T-TTTGCAT-GGAAGTTTATATTT-ACCTAG-GTGTTAA-TTCAAGAT-TGCTGTACTGTA--C-AAG--TCATACATGTAAC------TTTGTTAGAAAT-TA--C---TT-----------CATCGTT--------A-------CGC-TTTATT-CAATA-CTTGC-A---CCT---A-CA--CTGCC-ATAGATT-C--T--GC-A-----TG--TATT-CTA-TGAG-A-G----ATGTA-AGCT-----------AGGT--CAATT-GGCAA-GGCC-AC--AAATAAAAAAA-GATA-A--------TC-TTGGAAT-GCA-GTCA--TG-AA-AGTGGC-A-TTTTC-A--TAAT-----GATACTTG-CCT-T-CTATAGT--TCCTA-AAT-GT--ATTT-TTCA-CGATGTCCTTTCTGCAAA-A--CTCTT-AAAAGCTGCTTGTA-TTTCGTC-TAGCT-TTGCA-TACAAGA-GTAAAAT------GC-GGTTATG-GAACACAGTAA-GG-CTATACTTGAATTTGGCCAGAAAA------TATGATAAAA-TT-C----------------------AAACGC-CCCAA-C-AT-AAAATTGT-CAAA-CAACTTGT-----CG-TTA-----C-C-TTA-----TTTTTT--ACACA-CTTTC--AA-AATATCAT--AGTGT-C--AG-AACCAAT-CCTAGA-G
gi|8 : TATT-CAATA-CTAGC-A---CAT---AGCA-CCTGCC-ATG-ATC-ACATG-GCTA-----TA--T-AT-AT--TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GACAA-GG-C-AA--ACATGAATAAAAAATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TCC-A-AAT-G--------CTCATCGATGTCCATTCTGC-
gi|9 : CCCAT-T-CCCTA-CAG--CTAAATC----AT-----T----AT--------T------CAT--AGTTCC--C--CTAGTT-TAGC----A--CTTATGC-TCCAAAGA--GTCCACGAACGTT-CATTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--
Alignments
lowQualScore : 1 1 1 22 11 1 1 1 11 1 22222 11 1 444444444444 11 11 22222222 11111111 1111 11111 1111 11111 111111 222222 11111 1 1 333333333333333333333333333333333 2222222 1 111 111 1111111111 1 111 1111 333333333333333 1 3333333333333333333333 333333333333333333 111 555555555555555555555555555555555555555555 33333333 11111 11111 1111 44444444 11 1 111111 11 111111 2222222 111 1 11111 11111 33333 11 1111 1 33333333333333333333333 11
lowQualScore : 3 3 3 00 88 3 7 6 3 0 66 0 3 22222 33 5 2 444444444444 33 66 44444444 99 1 6 3 77777777 99 6 7777 66666 4444 66666 5 5 333333 444444 8 77777 6 8 6 6 3 66 777777777777777777777777777777777 77 99999 5 6666666 1 5 4 77 1 1 000 5 000 0 5 9999999999 6 5 6 6 555 6 5 2222 5 0 5 5 5 88 5 66 77 8 77 222222222222222 0 1 1111111111111111111111 222222222222222222 5 4 4 1 5 333 0 888 1 5 5 5 999999999999999999999999999999999999999999 5 5 9 0 1 1 66 4 4 4 4 8 4 66 1 8 0 00000000 5 22222 5 5 66 55 5 9999 5 99999 55 5 77 5 3333 5 5 5 66666666 1 5 5 33 5 5 5 0 1 5 5 5 5 444444 33 666666 5 5 5 4 5 5 5 5 1111111 5 5 5 5 000 99 6 6 6 6 7 44 6 6 6 66666 66666 6 1 00000 99 5 55 5 6 77 4444 5 77 1 5 55555555555555555555555 11 8 8
lowQualScore : . . . .. .. . . . . . .. . . ..... .. . . ............ .. .. ........ .. . . . ........ .. . .... ..... .... ..... . . ...... ...... . ..... . . . . . .. ................................. .. ..... . ....... . . . .. . . ... . ... . . .......... . . . . ... . . .... . . . . . .. . .. .. . .. ............... . . ...................... .................. . . . . . ... . ... . . . . .......................................... . . . . . . .. . . . . . . .. . . . ........ . ..... . . .. .. . .... . ..... .. . .. . .... . . . ........ . . . .. . . . . . . . . . ...... .. ...... . . . . . . . . ....... . . . . ... .. . . . . . .. . . . ..... ..... . . ..... .. . .. . . .. .... . .. . . ....................... .. . .
lowQualScore : 3 3 3 00 33 3 3 7 3 0 55 0 2 22222 88 5 5 888888888888 22 55 22222222 22 0 7 5 00000000 22 7 8888 77777 2222 77777 7 7 000000 000000 0 66666 0 0 7 7 3 99 999999999999999999999999999999999 99 33333 7 1111111 0 7 9 99 4 4 000 7 000 1 7 9999999999 7 0 7 7 222 7 7 1111 7 7 7 7 7 00 7 77 99 4 99 999999999999999 0 0 6666666666666666666666 444444444444444444 0 4 4 0 0 888 2 888 4 0 0 0 555555555555555555555555555555555555555555 0 0 4 1 7 9 11 4 4 7 4 9 4 11 0 9 4 66666666 0 55555 0 0 99 44 0 0000 0 44444 22 0 22 0 5555 0 0 0 77777777 4 0 7 66 7 7 7 4 4 7 7 7 7 777777 66 444444 7 7 7 3 7 7 7 7 4444444 7 7 7 7 888 22 7 7 7 7 7 55 7 7 7 77777 77777 7 7 22222 22 7 77 7 6 99 6666 7 99 4 7 33333333333333333333333 00 0 0
consensus : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTTTTTTGAA-AACCGA-GCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATT-GGAC-TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAA--AATA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TANT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGC----A--TNTATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--TA-ATC--AAA-GACATG-GAAA-CGA-GCCAGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGCTAA-TTCAAGAT-T-NTGTATTGTA--CAAAG--TCAT-------AC------TTTG-TANAAAT-GA--CCA-TT-----------CATCG-T--------A-------CGC-TTTATT-CAATA-CTNGC-A---CCT---AGCA-CCTGCC-ATA-ATT-A--TG-GC-A-----TG--TTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAANAAA-AATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TCC-A-AAT-GT--A-TT-CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGCG-TTCCGTC-T-GCA-TTA-A-TACA--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-CA-A-AT--GATCA-TATCTTGAAAACGC-CCCAA-C-ATGAAAANTGT-CAAA-CAAC-CGC-----CGTTTA-----C-CTTTA---TTTTTTTT--ACACA-CTTTC--AA-AANATCAT--AGTGT-N--GA-AA--AATCCCCAGA-GGGGGG-----------A-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
Reference ( family-639 ) : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTTTTTTGAA-AACCGA-GCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATT-GGAC-TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAA--AATA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TANT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGC----A--TNTATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--TA-ATC--AAA-GACATG-GAAA-CGA-GCCAGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGCTAA-TTCAAGAT-T-NTGTATTGTA--CAAAG--TCAT-------AC------TTTG-TANAAAT-GA--CCA-TT-----------CATCG-T--------A-------CGC-TTTATT-CAATA-CTNGC-A---CCT---AGCA-CCTGCC-ATA-ATT-A--TG-GC-A-----TG--TTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAANAAA-AATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TCC-A-AAT-GT--A-TT-CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGCG-TTCCGTC-T-GCA-TTA-A-TACA--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-CA-A-AT--GATCA-TATCTTGAAAACGC-CCCAA-C-ATGAAAANTGT-CAAA-CAAC-CGC-----CGTTTA-----C-CTTTA---TTTTTTTT--ACACA-CTTTC--AA-AANATCAT--AGTGT-N--GA-AA--AATCCCCAGA-GGGGGG-----------A-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|1 : GGACCATA-CCTTCTAATCTCAGCCTCATACTTTTTTTGAA-AACCGA--TTTGAAAGATTT--TATGTAACCA-TCGTTTACAATCTGTTCTAATTGT-ACGAACAAATATTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATTTGGACCTTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAGATAAAATA----TG--TATA--CAATT-TTACGCT--ATGG-----CAGTG----TATTTATAA-----TTTATATAAATATAGAATAT-TTTCATC-AAATTACATATAGA-GA---T--GA-ATTATTTCATTGTTTT--CT-GTA-TG-TCCCAT-TTCTCTAACAAAACTAAATATTACATG----T----AT--------T------CAT--ATTTCC--C--CTATTT-TAGC----T--TATATGC-TCCA--GA--GTCCACAAGCGTTGCTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCAA-TA-AT---AAA-AA-ATG-GAAAACGA-GCCAGT-AATTGA-TA----T-TTTAC-TTGGACGTT-ATATTTTACTAAA-GTGCTAAATTCAAGAT-T-TTGTATTATA--CAAAG--TCAT-------AC------TTTGGTATAAAT-AATACCA-TT-----------CATCG-T--------A-------CACCTTTA---CAATA-CTAGC-AA--TTT---AACA-CCTGCCCATA-ATT-A--CT-AC-A-----TG--GC-T-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-G-CAA-GGGC-AA--ACATGATTAGA-AAAGTA--------TC-T-----C-GCA-GTCA--TGTAA-T-TGCT-ACTTTCC-A--T-AT-----GAA-TCTG-TCT-C-CTATA-T--TCC-A-AATCG--------CTCATCGATGTCCTTTCTGC-AATACTCTCTT-AAAAGCTA-TTGCG-TTCCGTC-T-GCA-TTA-A-TA-A--A-GTA-AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-CATA-AT--GATCA-TATCTTGAAAACGC-CCCAA-C-ATAAAAAATGT-CAAA-CAAC-CGT-----CGTTTA-----C-CTTTA---TTTTTTAC--ATACA-CTTTC--AA-AAAATCAT--AGTGT-T--GA-AA--AAT-CCCAGG-GGGGGG-----------G-G
gi|10 : agatctatactttcctcaatacttaatttggtttcaatcaattaatatatgtaaaattgtatatacaaccaagcaatggaaagtgtgcgtttctgaataacaatacatcctttactatccttgTTCTATG--------TAACATAAA--GTCATCAG-AAATTAAAAAA--AAT---TATG--CAATG-TTACG-A--ATGG-----CAGTA----TATTTATATATATATTTTTAAAAATATAGAATATATTTCATCAAA-TTACA
gi|11 : TGTCCTTTCTGC-AA-A--CTATT-AAAAGCTA-TTGCG-T-----C-T-GCA-TTA-A-TA----A-GT--AAT------AC-AG-TATG-GAACTCAGTAAGGG-TTATAC-TGAATTC-GCCA-AAAA------T-TGAT-AAA-TT-
gi|12 : TCTATG--------TAACATAAA--GTTATCAG-AAAATTAAAAA--AATA--TATA--CAATT-TTACG-TAAATGG-----CACTA----TATTTATCT-----TTTTTATAAATATAGATTATATTTCATC-AA-
gi|13 : CACA-CTTTC--AA-AATATCAT--AGTGT-A--GA-AA--A-TCCCCAGA-GGGGTG-----------A-GGCA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|14 : TTCCTC-AA-TTACAT-TATTTGA---TT-AA-ATTATTTCATTGTTAT-T---ATA-TA-CCCCAT-T-CTCTA-CAG--C
gi|15 : -------AC------TTTG-TAGAAATTGA--CCG-TT-----------CATCG-C--------A-------CGC-TTTATT-CAATA-C
gi|16 : GAATGTAAGGT--CAA-T-GGCAG-GG-C-AA--ACATGATTAGA-AAct
gi|2 : GA-CAAGT-CTTTATA-GCTGATTTTAATTTGATGAGTTAG-GCTTATGAAACAGAGTGC--------CTAAA-ATGTTTTTCTTAT-GCATT-GGAC-TTTATGT--ACGATAATCGTTAACATAAAATGTCATCAGGAAAATAAAAAAGAAACAGCTATAATTAATTGTTACGAT--ATGGGCAAGCACTAATATTATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-ATTCAT-AAAT-GAAATTAAGA-ATTATTCAGTTGTTTT-TAT-ATAATGGTCCCAT-T-CTCTATCTG--CTAAATA-----T-----T----AT--------TCTGTATTATTCATTTCT--CATCTATTTGCAGCTATAA--TTTAT---CCCAACGAACGTCCACGAGCGTT-CCCTTGGCTGATGTGTGA---TACGCATTAA-TGA-CCTCTAAGTACATC--AA----CATGCGAAA-CAA-GCCAGTTAATTAA-TA----T-TTCAGATTGGAAGTT-ATATTA-ACTTAGAGTGCTAA-TTCAAGATAT-GTGTATTATAGTCAAAGATTCAT-------ACA-----CTTG-TATAAAT-AA--CCAGTTA----------CATCG------------------CAC-CTTACT-ACATAGCTTGC-GAAGCCTTTTATCATCCCACC-ATA-CGT-AG-TG-GC-AATCAATGA-TTAT-A----AGGTACG----ATA-C-AGTTTTGGAACTGAATGGTAGCAA-TTGGCAA-GG-C-AACAAC-CGAGGAGA-AATGTA--------TC-T-----C-GCAAGTCAAATCTAT-TCTGCT-ACTTTCC-------T-----G-T-TCTC-TC--T-CTATT-C--TCA-A-AAT-GCTAA-AT-CT----GATGTC-----TGC-AA-AA-CTCT--AAAAGCTA-TTGCG-TTCCGTCCT-GCAGTTA-A-TACA--G-GT--AATTATGTTGCTAA-TATG-GAACACAGTAAGG--TTATAC-TGAATTT-GCCA-AAAAAATAATC-TGAT-ATC-TTTCA-A-ATTAAATCA-TATCTTGAAA-CGC-CCCAA-CCAT-AGAAATGTGCAAA-CATT-CGCGTGCGTGTTTGTGAGCC-CCTTA---TTCTGTGTCGACAC--CTTTCCAAA-AATATCATTGAGTGT-GTAGAGAA--AATCCCCAGA-GAGGGGGTTTGGGGAGGA-GGGACGTGTATGTGTTACTGGAACGCC-ACGGT
gi|3 : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTGTTTTGAA-AACCGAAGCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GGAACAGATTTCTTTACGGACTAAAGAT----------T-GCAT--GGA--TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAATA--TGTA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCG-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TATT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGC----ACGTATATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATCAA-TGGGCCTCCA--TA-ATC--AAA-GA-ATG-GAAA-CGA-GCCAGT-AATTGA-TAGGCCTATTTACATTGGAAGTT-ATATTT-ACTAAA-GTGCTAA-TTCAAGAT-T-GTGTATTATA--C-AAG--TCAT-------AC------TTTG-TATAAA--AA--CCA-TT-----------CATCG-T--------A-------CA--TTTATTCCAATA-CTAGC-A---CTT---AGCA-CCTGCC-ATA-ATTAA--TG-AC-A-----TGGCTTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAATAAA-AATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-TT-----GAT-CCTG-TCC-T-TAATA-C--GCC-A-AAT-G--------CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AACAGCTA-TTGCG-TTCCGTC-T-GCA-TTA-A-T--A--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TGATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-TA-G-AT--GATCA-TATCTTGAAAACGC-GCCAA-C-AT-AAATATGT-CAAA-CAAC-CGT-----CGTTTA-----C-CTTTATTTTTTTTTTT--ACACA-CTTTC--AAGAAAATCAT--AGTGT-T--GA-AA--AATCCCCAGA-GGGGGG-----------A-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
gi|4 : GGGCTCTAACCATTTAATCTCAGCTTCAAA-ATTTTTTGAATAACTGA-GCTTGAAAGATTTGTTATGTCAGCAATCCTTT-CAAT-TGTTCTAATTGTGACGA-CAAAT--TTT-TATGCTGATTTTTATTTTATGGG---AAGCTT--GAAACAGATTTC-TTACGGACTAAAGAT----------TGGCAAT-GGGT-TTTTTTTCTACG--------TCACATAAA--GT-AT-AG--AAAT-AAAAT--AGTA--TA-A--CAATT-TTACG-T--ATGG-----C-GTA----TATTTATCT-----TTTATATAAATATAG-ATATATTTCATA-AA-TTACAT-T--T-GA---T--GATATTATTTAATTGTTTTGTCTGGTATTG-T-TCATAT-CTCTG-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATT-----A--CTATTT-T-GC----AT-TATATGC-TC--AAGA--GTCCAT-AGCGTT-CTTTTTGCTGAT---T-ATATTATACATTAA-TGGG-CTCCA--C--ATCATAAA-GA-ATG-G-AA-CG--GCCAGT-AATTAAGTA----C-TTTA-ATT-GAAGTT-ATATTT-ACTAAG---GCTAA--TCAAGAT-T-GTATATTAT---CCAAG--TCAT-------AC------TTTA-TATAATT-AA----A-TTGGTCTGAACTACATCG-TTGTTTTTCAGACTATCCAC-TTTATT-CAAT---TAG--A---CAT---AGCA-ATTG-C-ATG-AT--------AC-A-----TG--TTATAATATTAGGTG-GTGGAATA-AGAGTTTTGGGAATGTAAAGT--CAA-T-GACAAGGG-CAAA--ACATG-ATAAA-AATGTA--------TCTT-----C-GCA-GTCA--T-TAA-TGTGCT-ATATTCC-A--T-ACACTCGGAT-CCAGCTCCTT-CT----C--TCT-A-AAT-
gi|5 : aggcttatacttcctcaatactgtaatgtttgtttcaatcattaatatgtgtaaatccataaattgacataaatgcaatggaaagtatgcgtttcggaatacaataatgtttgtactatcctt--CTAAATA----ATGATAATGGCAAT--------T------TAT--ATTTCCACC--CTATTT-TAGC----AA-TTTATGCCTCCAAAGC--ATCCATGCACTTTTCTTTTTGCTGAT---T-A---TAT-CATTAAATGGGCTCACA--TA-CTT--AAATGACATG-GAAG-CCCTGCCAGT-AATTA--CA----T-TTTACATTGGAA-TT-ATATTT-ACTAAG-GTGTTAA-CTCAAGAT-T-CTGTATTGTA--CAAAG--TCATCACATGTAC------TTTG-TAGAAAT-GA--CC--TT-----------CATCT-T--------A-------CGC-TTTAT--CAATA-CTTGCCA---CCT---AGCA-CCTGCC-A---ATA-A--TGTGC-A-----TG--T----------------------A-A-GGCT-----------AGGT--CAA-T-G-CAA-GG-C-AC--AAATGAAAAAATAATATGAAGAATTTTC-T-----T-GCA-GTCA--TGTA--TGTGCTTACTTTCCCACCT-AT-----GAT-ACTG-TTC-TTCTATA-TG-TCT-ATAAT-GT--A-TTGCTCATCGATGTCCTTTCTGC-AA-A--CTCTTTAAAAGCTG-TTGTAATTTCGTC-T-GCA-TTA-AATACA--AAGT--AAT------GC-GG-TATGCGAACACAGTAATGGCTTATAC-TGAATTT-GCCA-AAA-------T-TGAT-AAAATT-CA-AGAT--GATCAATATCTTGAAAACGC-CCCAAAC-ATGAAA-TTGT-CAAAACAAC-TGC-----CGTTTA-----CACTTTA-----TTTTTT--AC-CACCTTTCAAAA-AAGATCAT--AGTGA-A--GA-AA--AAT-CCTAGA-GGGGGG-----------GCGGTA-----TTGTGTTACTGG--C-CCGATGGTCTttccta
gi|6 : --CTAAATA----AT-----G----ATAAATGGCAT------TAT--ATTTCC--C---TATTT-TAGC----A--TTTATGC-TCCAA-GA--ATCCATGCACTTT-CTTTT-GCTGAT---T-A---TATA-ATTAA-TGGGCCTCCA--TA--TT--AAA-GACATG-GAAG-CCT-GC-AGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGTTAA-CTCAA-AT-T-CTGTATTGTA--CAAAG--TCAT-------ACATGTACTTTG-TAGAAATTGA--C---TT-----------CATCT-T--------A-------CGC-TTTATT-CAATA-CTTGC-A---CCT---AGCA-CCTGCC-ATA-ATT-------GC-A-----TG--T------------------------A-AGCT-----------AGGT--CAA-T-GGCAA-GG-C-AC--AAATGAAAAAA-AATGAAAAAAT---TT-T-----CTGCA-GTC---TGTAAATGTGCT-ACTTTCC-A--T-ATAA---GAT-ACTG-TCT-T-CTATA-TATTCT-A-AAT-GT--A-TTGCTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGTA-TTTCGTCCT-GCA-TTA-A-TACA--AAGT--AA-------GC-GG-TATG-GAACACAGTAATGG-CTATAC-TGAATTT-GCCA-AAA-------T-TGAT-AAA-TT-CA-A-AT--GATCA-TATCTTGAAAACGCGCCCAA-C-ATG-AAATTGT-CAAA-CACA-TGC-----CGTTTA-----C-CTTTA-----TTTTTT--ACACA-CTTTC--AA-AA-ATCAT--A-TGTAA--GA-AA--AATCCCTAGAGGGGGGG-----------A-GGT------TTGTGTTACTGG--C-CC-ATGGT
gi|7 : TTAA-CA----T-TTTGCAT-GGAAGTTTATATTT-ACCTAG-GTGTTAA-TTCAAGAT-TGCTGTACTGTA--C-AAG--TCATACATGTAAC------TTTGTTAGAAAT-TA--C---TT-----------CATCGTT--------A-------CGC-TTTATT-CAATA-CTTGC-A---CCT---A-CA--CTGCC-ATAGATT-C--T--GC-A-----TG--TATT-CTA-TGAG-A-G----ATGTA-AGCT-----------AGGT--CAATT-GGCAA-GGCC-AC--AAATAAAAAAA-GATA-A--------TC-TTGGAAT-GCA-GTCA--TG-AA-AGTGGC-A-TTTTC-A--TAAT-----GATACTTG-CCT-T-CTATAGT--TCCTA-AAT-GT--ATTT-TTCA-CGATGTCCTTTCTGCAAA-A--CTCTT-AAAAGCTGCTTGTA-TTTCGTC-TAGCT-TTGCA-TACAAGA-GTAAAAT------GC-GGTTATG-GAACACAGTAA-GG-CTATACTTGAATTTGGCCAGAAAA------TATGATAAAA-TT-C----------------------AAACGC-CCCAA-C-AT-AAAATTGT-CAAA-CAACTTGT-----CG-TTA-----C-C-TTA-----TTTTTT--ACACA-CTTTC--AA-AATATCAT--AGTGT-C--AG-AACCAAT-CCTAGA-G
gi|8 : TATT-CAATA-CTAGC-A---CAT---AGCA-CCTGCC-ATG-ATC-ACATG-GCTA-----TA--T-AT-AT--TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GACAA-GG-C-AA--ACATGAATAAAAAATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TCC-A-AAT-G--------CTCATCGATGTCCATTCTGC-
gi|9 : CCCAT-T-CCCTA-CAG--CTAAATC----AT-----T----AT--------T------CAT--AGTTCC--C--CTAGTT-TAGC----A--CTTATGC-TCCAAAGA--GTCCACGAACGTT-CATTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--
blockSeqs : A . T AG GT A A C G . C A T TTAG AT T G GTTTTTCTTAT T C ATAATCGT AT C G A GAAACAGC AT G TAA GCAAG ATAT ATATA A . TATTT AATTAA T GTCTG A G A . T . ATGATAATGGCAATT TC CAT G TATAA T C C AC T G GTG G TAT A AGTACATC T C C . CCT T G GGCC A T . A T A GC GT A AT CACATGTAC T G AAATTGGTCTGAACTA TTGTTTTTCAGACTATC . C G T C AAG TTT T T . G TAGTGGCAATCAATGATTATAAGGTACG T G T A T AG T T G G C A CA T T AAGAATTT T TGGAA T A AA AA T CACC A ACTCG AC C CT T TAT T T . CTAAAT T A . A T C A C A G C A CAAGA AA TATGTT T T C G C T G G AAATAAT A A A T AG TA A G A C G AA G A T GTGCG TGAGC A C TTTTT CG C CA G T TG GTA G CC C G GTTTGGGGAGGAGGGACGTGTA AA G G
blockSeqs : . . . G . . . . . . C . T AA . . G TG T T . . T . T AATA . . AT . . . . . AAAT TT . TAT T . . . . . ATGATAAATGGCAT . ACC . ACG A . A . . T . . . . CATCAT . C . . AA . . . . . . . T . G . C . ACATGTAAC . T AACCAGTTA TTA . . . A . . . G . . . TAATGACATGGCTTATATATAGGTAG . . T C A . . . G . . . . G A AAAAT . . . . . T . A . AA T . C . TG . . . TATTG T . . . . . . C . . . . CAAA . . . . . G . . . . A . . . . A . . . . . G TA . . . . . . T TT . . AA . T . AA . . C . GCGGTAT . . .
blockSeqs : . . . . A . . . T . . . . C . A TGTA . . A . . . . . TATT T . TCT . . . . . . TTATTCTGTAT . C . AT A . A . . T . . . . TAATC . C . . GA . . . . . . . C . G . A . ACATGTAC . T TGACCGTT CA . . . A . . . G . . . ACATGTTATAATATTAGGTGGTGGA . . T A T . . . G . . . . T . . . . . . . A . A . . C . C . GT . . . TATTG T . . . . . . . . . . . CAAA . . . . . G . . . . A . . . . G . . . . . . AT . . . . . . T . . . . . A . A . . C . AGGTAA . . .
blockSeqs : . . C . A AGTA . . T . . . . . TT T . T . . . . . . ATTATT . A . AA T . A . . T . . . . TACTT . . . . CT . . . . . . . C . G . A . ACA . T AACCATT TA . . . T . . . G . . . CACATGGCTATATATATTAGGTAG . . T A T . . . A . . . . T . . . . . . . A . A . . C . T . C . . . TATTT T . . . . . . . . . . . CAG . . . . . T . . . . A . . . . A . . . . . . AT . . . . . . T . . . . . G . T . . C . AGGTT . . .
blockSeqs : . . . . . AAT . . T . . . . . . . . . ATTATT . C . A T . A . . T . . . . TATT . . . . G . . . . . . . T . C . . . AC . G GACCTT TA . . . T . . . G . . . TCTGCATGTATTCTATGAGAG . . . A T . . . G . . . . A . . . . . . . A . A . . A . T . C . . . . . . . . . . . . . . . . AA . . . . . T . . . . . . . . . . . . . . . . T . . . . . . . . . . . . T . A . . . .
blockSeqs : . . . ATTATT . C . A T . . . . . . . . . . . . . . . . . C . . . AC . G TGACTT TA . . . T . . . G . . . AATGTGCATGT . . . . . . . . G . . . . A . . . . . . . A . A . . A . C . C . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . C . . . .
blockSeqs : . AC . G TACTT . . . . A . . . . . . . TGCATGT . . . . . . . . A . . . . A . . . . . . . . . . . . C . . . T . . . .
blockSeqs : . . . . . . . . . . . . T .
blockSeqCons : AGTA**** T*** TAT*** TT*** ** ATTATT*************************** A****** T* GACCATT*************** *** TACATGCTATATATATAGGTAG******************** TATT**** ** CAAA** ** A** ***** AGGTAT*****************
originalCons : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTTTTTTGAA-AACCGA-GCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATT-GGAC-TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAA--AATA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-TTACAT-TANT-GA---T--GA-ATTATTTCATTGTTTT-TCT-GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATA----AT-----T----AT--------T------TAT--ATTTCC--C--CTATTT-TAGC----A--TNTATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--TA-ATC--AAA-GACATG-GAAA-CGA-GCCAGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGCTAA-TTCAAGAT-T-NTGTATTGTA--CAAAG--TCAT-------AC------TTTG-TANAAAT-GA--CCA-TT-----------CATCG-T--------A-------CGC-TTTATT-CAATA-CTNGC-A---CCT---AGCA-CCTGCC-ATA-ATT-A--TG-GC-A-----TG--TTAT-ATA-TAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAANAAA-AATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TCC-A-AAT-GT--A-TT-CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGCG-TTCCGTC-T-GCA-TTA-A-TACA--A-GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-CA-A-AT--GATCA-TATCTTGAAAACGC-CCCAA-C-ATGAAAANTGT-CAAA-CAAC-CGC-----CGTTTA-----C-CTTTA---TTTTTTTT--ACACA-CTTTC--AA-AANATCAT--AGTGT-N--GA-AA--AATCCCCAGA-GGGGGG-----------A-GGTA-----ATGTGTTACTGG--C-CC-ACGGTCT
finalCons : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTTTTTTGAA-AACCGA-GCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACGA-CAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATT-GGAC-TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAAAGTA----TATA--CAATT-TTACGT---ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AA-TTACATTAT---GA---T--GA-ATTATTTCATTGTTTTTT---GTA-TG-TCCCAT-T-CTCTA-CAG--CTAAATAATTATT---------------------------TAT--ATTTCC--C--CTATTT-TAGCA------TNTATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT---T-A---TATACATTAA-TGGGCCTCCA--TA-ATC--AAA-GACATG-GAAA-CGA-GCCAGT-AATTAA-CA----T-TTTACATTGGAAGTT-ATATTT-ACTAAG-GTGCTAAT-TCAAGAT-T-NTGTATTGTA--CAAAG--TCAT-------AC------TTTG-TANAAATGACCATT---------------CATCG-T--------A-------CGC-TTTATT-CAATA-CTNGC-A---CCT---AGCA-CCTGCC-ATA-ATTACATGCTATATATATAGGTAG--------------------ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GGCAA-GG-C-AA--ACATGAANAAA-AATGTA--------TC-T-----C-GCA-GTCA--TGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TCC-A-AAT-GTATT----CTCATCGATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGCG-TTCCGTC-T-GCA-TTA-A-TACAAA--GT--AAT------GC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-AAA-TT-CAA--AT--GATCA-TATCTTGAAAACGC-CCCAA-C-ATGAAAANTGT-CAAA-CAAC-CGC-----CGTTTA-----C-CTTTA-----TTTTTT--ACACA-CTTTC--AA-AANATCAT--AGTGT-N--GA-AA--AATCCCCAGA-GGGGGGAGGTAT-----------------TGTGTTACTGG--C-CC-ACGGTCT
Alignments
lowQualScore : 1 1 1 22 11 1 1 1 11 1 22222 11 1 444444444444 11 11 22222222 11111111 1111 11111 1111 11111 1 33333333333333333 222222 1111 11111 333333333333333333333333 11111 2222222 1 1111111 1111111111 1 111 1111 333333333333333 3333333333333333333333 333333333333333333 111 66666666666666666666666666666666666666666666666666666 33333333 11111 11111 11 333333 1 11111 11 111111 1 2222222 111 1 1 11111 11111 11111 1111 11 22222222 2222222 111 11
lowQualScore : 3 3 3 00 88 3 7 6 3 0 66 0 3 22222 33 5 2 444444444444 99 66 44444444 99 1 6 3 99999999 99 6 7777 66666 4444 66666 1 44444444444444444 8 0 111111 8 7777 6 6 666 99 33333 000000000000000000000000 44444 99999 5 6666666 1 5 1 1 77 1 1 5 1111111 0 5 5 4444444444 6 5 6 6 555 6 5 2222 5 0 5 5 5 5 2 5 66 77 8 77 222222222222222 5 5 1 1111111111111111111111 222222222222222222 5 4 4 1 888 9999 1 5 5 5 99999999999999999999999999999999999999999999999999999 777 9 0 1 1 66 8 8 4 4 66 55 4 0 00000000 5 22222 5 5 66 55 5 9999 5 99999 55 5 5 5 0 5 11 666 5 5 999999 5 5 0 5 77 5 5 5 0 5 5 5 5 5 5 44444 33 666666 5 5 5 1 5 5 5 5 1111111 5 5 5 5 000 99 6 3 6 3 7 44 6 6 6 66666 66666 6 1 66666 4444 33 5 77 5 6 77 77 77 66 5 77 4 1 5 44444444 6 1111111 333 11 8 8
lowQualScore : . . . .. .. . . . . . .. . . ..... .. . . ............ .. .. ........ .. . . . ........ .. . .... ..... .... ..... . ................. . . ...... . .... . . ... .. ..... ........................ ..... ..... . ....... . . . . .. . . . ....... . . . .......... . . . . ... . . .... . . . . . . . . .. .. . .. ............... . . . ...................... .................. . . . . ... .... . . . . ..................................................... ... . . . . .. . . . . .. .. . . ........ . ..... . . .. .. . .... . ..... .. . . . . . .. ... . . ...... . . . . .. . . . . . . . . . . ..... .. ...... . . . . . . . . ....... . . . . ... .. . . . . . .. . . . ..... ..... . . ..... .... .. . .. . . .. .. .. .. . .. . . . ........ . ....... ... .. . .
lowQualScore : 3 3 3 00 33 3 3 7 3 0 55 0 2 22222 88 5 5 888888888888 88 55 22222222 22 0 7 5 22222222 22 7 8888 77777 2222 77777 4 88888888888888888 0 8 666666 0 0000 7 7 888 22 66666 333333333333333333333333 33333 33333 7 1111111 0 7 4 4 99 4 4 7 0000000 1 7 7 2222222222 7 0 7 7 222 7 7 1111 7 7 7 7 7 7 3 7 77 99 4 99 999999999999999 0 0 0 6666666666666666666666 444444444444444444 0 4 4 0 888 0000 4 0 0 0 00000000000000000000000000000000000000000000000000000 000 4 1 7 9 11 9 9 4 4 11 44 4 4 66666666 0 55555 0 0 99 44 0 0000 0 44444 22 0 0 0 1 0 99 000 0 0 999999 7 7 0 7 99 7 7 7 4 7 7 7 7 7 7 33333 66 444444 7 7 7 4 7 7 7 7 4444444 7 7 7 7 888 22 7 2 7 3 7 55 7 7 7 77777 77777 7 7 77777 2222 66 0 99 7 6 99 99 99 77 7 99 3 7 7 22222222 7 7777777 222 00 0 0
consensus : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTTTTTTGAA-AACCGA-GCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACG-ACAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCA-TTGGA-CTTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAA--AATA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AATTACAT-TA-T---G--ATT--GA-ATTATTTCATTGTTTT---T-TGTA-T----GTCCCA-T-TCTCT-A-C--AGCTAAATA----AT-----T----AT--------T---TAT-----ATTTCC--C--CTATTT-TAGC----A--TNTATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT-T---A---TATACATTAA-TGGGCCTCC-A--TA-ATC--AAA-GACATG-G-AAACGA-GCCAG-TAATTAA-CA----T-TTTACATTGGAAGTT-ATA-TTTACTAAG-GTGCT-AATTCAAGAT-T-NTGTATTGTA--CAAAG--TCAT-------AC------TTT-G-TANAAAT-G--ACCA-TT-----------CATCG-T--------A-------CG-CTTTATT-CAATA-CTNGC---ACC---TAGCA-CCTG-CCA-T----------A-AT--T----ACAT-G-CTATA--TATA-T-AGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-TGGCAA-GG-C-AAACA--TGAA-NAAA-AATGTA--------TC-T-----C-GC-AGTC--ATGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TC-C-A-AAT-GTA-TT-CT-CATC-GATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGCG-TTCCGT-C-T-GCA-TTA-A-TACAA-AGT--AA------TGC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-A-AA-TTCA-A-AT--GATCA-TATCTTGAAAACGC-CCCAA-CATGAAAANTGT-CAAA-CAAC-CGC-----CGTTTA-----C-CTTTA-----TTTTTT----AC--ACACTTTC--AA-AANA--TCAT--A--GTGT-AGA-AA--AATCCCCAGA-GG--------GGGGA-G-------GTAT-TGTGTTACTGG--C-CC-ACGGTCT
Reference ( family-639 ) : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTTTTTTGAA-AACCGA-GCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACG-ACAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCA-TTGGA-CTTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAAAA--AGTA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AATTACAT-TA-T---G--AT---GA-ATTATTTCATTGTTTT---T-TGTA-T----GTCCCA-T-TCTCT-A-C--AGCTAAATA----AT-----T----AT--------T---TAT-----ATTTCC--C--CTATTT-TAGC----A--TNTATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT-T---A---TATACATTAA-TGGGCCTCC-A--TA-ATC--AAA-GACATG-G-AAACGA-GCCAG-TAATTAA-CA----T-TTTACATTGGAAGTT-ATA-TTTACTAAG-GTGCT-AATTCAAGAT-T-NTGTATTGTA--CAAAG--TCAT-------AC------TTT-G-TANAAAT-G--ACCA-TT-----------CATCG-T--------A-------CG-CTTTATT-CAATA-CTNGC---ACC---TAGCA-CCTG-CCA-T----------A-AT--T----ACAT-G-CTATA--TATA-T-AGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-TGGCAA-GG-C-AAACA--TGAA-NAAA-AATGTA--------TC-T-----C-GC-AGTC--ATGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TC-C-A-AAT-GTA-TT-CT-CATC-GATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGCG-TTCCGT-C-T-GCA-TTA-A-TACAA-AGT--AA------TGC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-A-AA-TTCA-A-AT--GATCA-TATCTTGAAAACGC-CCCAA-CATGAAAANTGT-CAAA-CAAC-CGC-----CGTTTA-----C-CTTTA-----TTTTTT----AC--ACACTTTC--AA-AANA--TCAT--A--GTGT-NGA-AA--AATCCCCAGA-GG--------GGGGA-G-------GTAT-TGTGTTACTGG--C-CC-ACGGTCT
gi|1 : GGACCATA-CCTTCTAATCTCAGCCTCATACTTTTTTTGAA-AACCGA--TTTGAAAGATTT--TATGTAACCA-TCGTTTACAATCTGTTCTAATTGT-ACGAACAAATATTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GAAACAGATTTCTTTACGGACTAAAGAT----------T-GCATTTGGACCTTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAGATAAAATA----TG--TATA--CAATT-TTACGCT--ATGG-----CAGTG----TATTTATAA-----TTTATATAAATATAGAATAT-TTTCATCAAATTACA--TA-TAGAG--AT---GA-ATTATTTCATTGTTTT---C-TGTA-T----GTCCCATT-TCTCTAA-CAAAACTAAATATTACATG----T----AT--------T---CAT-----ATTTCC--C--CTATTT-TAGC----T--TATATGC-TCC--AGA--GTCCACAAGCGTTGCTTTTTGCTGAT-T---A---TATACATTAA-TGGGCCTCCAA--TA-AT---AAA-AA-ATG-GAAAACGA-GCCAG-TAATTGA-TA----T-TTTAC-TTGGACGTT-ATATTTTACTAAA-GTGCTAAATTCAAGAT-T-TTGTATTATA--CAAAG--TCAT-------AC------TTTGG-TATAAAT-AATACCA-TT-----------CATCG-T--------A-------CACCTTTA---CAATA-CTAGCA--ATT---TAACA-CCTGCCCA-T----------A-AT--T----AC-T-A-C-ATGGCTATA-T-AGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-T-GCAAGGG-C-AAACA--TGAT-TAGA-AAAGTA--------TC-T-----C-GC-AGTC--ATGTAA-T-TGCT-ACTTTCC-A--T-AT-----GAA-TCTG-TCT-C-CTATA-T--TC-C-A-AATCG------CT-CATC-GATGTCCTTTCTGC-AATACTCTCTT-AAAAGCTA-TTGCG-TTCCGT-C-T-GCA-TTA-A-T--AA-AGTA-AA------TGC-GG-TATG-GAACACAGTAAGGG-TTATAC-TGAATTT-GCCA-AAAA------T-TGAT-A-AA-TTCATA-AT--GATCA-TATCTTGAAAACGC-CCCAA-CATAAAAAATGT-CAAA-CAAC-CGT-----CGTTTA-----C-CTTTA-----TTTTTT----ACATACACTTTC--AA-AAAA--TCAT--A--GTGT-TGA-AA--AAT-CCCAGG-GG--------GGGGG-G-------
gi|10 : agatctatactttcctcaatacttaatttggtttcaatcaattaatatatgtaaaattgtatatacaaccaagcaatggaaagtgtgcgtttctgaataacaatacatcctttactatccttgTTCTATG--------TAACATAAA--GTCATCAG-AAATTAAAAAA--AAT---TATG--CAATG-TTACG-A--ATGG-----CAGTA----TATTTATATATATATTTTTAAAAATATAGAATATATTTCATCAAATTACA
gi|11 : TGTCCTTTCTGC-AA-A--CTATT-AAAAGCTA-TTGCG-T------C-T-GCA-TTA-A-TA----AGT--AA------TAC-AG-TATG-GAACTCAGTAAGGG-TTATAC-TGAATTC-GCCA-AAAA------T-TGAT-A-AA-TT
gi|12 : TCTATG--------TAACATAAA--GTTATCAG-AAAATTAAAAA--AATA--TATA--CAATT-TTACG-TAAATGG-----CACTA----TATTTATCT-----TTTTTATAAATATAGATTATATTTCATC-AA
gi|13 : C--ACACTTTC--AA-AATA--TCAT--A--GTGT-AGA-AA--A-TCCCCAGA-GG--------GGTGA-G-------GCAA-TGTGTTACTGG--C-CC-ACGGTCT
gi|14 : TTCCTC-AATTACAT-TA-TTT-G--ATT--AA-ATTATTTCATTGTTAT---T--ATA-T----ACCCCA-T-TCTCT-A-C--AGC
gi|15 : -------AC------TTT-G-TAGAAATTG--ACCG-TT-----------CATCG-C--------A-------CG-CTTTATT-CAATA-C
gi|16 : GAATGTAAGGT--CAA-TGGCAG-GG-C-AAACA--TGAT-TAGA-AAct
gi|2 : G-ACAAGT-CTTTATA-GCTGATTTTAATTTGATGAGTTAG-GCTTATGAAACAGAGTGC--------CTAAA-ATGTTTTTCTTAT-GCA-TTGGA-CTTTATGT--ACGATAATCGTTAACATAAAATGTCATCAGGAAAATAAAAAAGAAACAGCTATAATTAATTGTTACGAT--ATGGGCAAGCACTAATATTATTTATCT-----TTTATATAAATATAGAATATATTTCATC-AAATTCATAAA-T---GAAATTAAGA-ATTATTCAGTTG-TTT---T-TATA-TAATGGTCCCA-T-TCTCT-ATC--TGCTAAAT-----AT-----T----AT--------TCTGTATTATTCATTTCT--CATCTATTTGCAGCTATAA--TTTAT---CCCAACGAACGTCCACGAGCGTT-CCCTTGGCTGATGTGTGA---TACGCATTAA-T-GACCTCT-AAGTACATC--A----ACATGCG-AAACAA-GCCAGTTAATTAA-TA----T-TTCAGATTGGAAGTT-ATA-TTAACTTAGAGTGCT-AATTCAAGATAT-GTGTATTATAGTCAAAGATTCAT-------ACA-----CTT-G-TATAAAT-A--ACCAGTTA----------CATCG------------------CA-CCTTACT-ACATAGCTTGCGAAGCCTTTTATCATCCCA-CCA-TACGTAGTGGCA-AT--C----A-AT-G---AT---TATA---AGGTACG----ATA-C-AGTTTTGGAACTGAATGGTAGCAATTGGCAA-GG-C--AACAACCGAG-GAGA-AATGTA--------TC-T-----C-GCAAGTCAAATCTAT-TCTGCT-ACTTTCC-------T-----G-T-TCT----C-T-CTCTA-T--TCTC-A-AA----A-TG-CTAAATCTGATG-----TCTGCAAA-A--CTC-T-AAAAGCTA-TTGCG-TTCCGTCC-T-GCAGTTA-A-TAC-A-GGT--AATTATGTTGCTAA-TATG-GAACACAGTAA-GG-TTATAC-TGAATTT-GCCA-AAAAAATAATC-TGAT-ATCT-TTCA-A-ATTAAATCA-TATCTTG-AAACGC-CCCAACCAT-AGAAATGTGCAAA-CATT-CGCGTGCGTGTTTGTGAGCC-CCTTA-----TTCTGTGTCGAC--AC-CTTTCCAAA-AATA--TCATTGAGTGTGT-AGAGAA--AATCCCCAGA-GAGGGGGTTTGGGGA-GGAGGGACGTGTATGTGTTACTGGAACGCC-ACGGT
gi|3 : GGACTCTA-CCTTCTAATCTCAGCCTCATA-TTGTTTTGAA-AACCGAAGCTTGAAAGATTT--TATGTCACCA-TCCTTTACAATCTGTTCTAATTGT-ACG-ACAAAT-CTTT-TATGCTGATTTTAATTTGATGGG---A-GCTT--GGAACAGATTTCTTTACGGACTAAAGAT----------T-GCA--TGGA--TTTTTTTCTACG--------TAACATAAA--GTCATCAG-AAAATAAAATA--TGTA--TATA--CAATT-TTACG-T--ATGG-----CAGTA----TATTTATCG-----TTTATATAAATATAGAATATATTTCATC-AATTACAT-TATT---G--AT---GA-ATTATTTCATTGTTTT---TCTGTA-T----GTCCCA-T-TCTCT-A-C--AGCTAAATA----AT-----T----AT--------T---TAT-----ATTTCC--C--CTATTT-TAGC----ACGTATATGC-TCCAAAGA--GTCCACGAGCGTT-CTTTTTGCTGAT-T---A---TATACATCAA-TGGGCCTCC-A--TA-ATC--AAA-GA-ATG-G-AAACGA-GCCAG-TAATTGA-TAGGCCTATTTACATTGGAAGTT-ATA-TTTACTAAA-GTGCT-AATTCAAGAT-T-GTGTATTATA--C-AAG--TCAT-------AC------TTT-G-TATAAA--A--ACCA-TT-----------CATCG-T--------A-------CA--TTTATTCCAATA-CTAGC---ACT---TAGCA-CCTG-CCA-T----------A-AT--TAATGACATGG-CT-TA--TATA-T-AGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-TGGCAA-GG-C-AAACA--TGAA-TAAA-AATGTA--------TC-T-----C-GC-AGTC--ATGTAA-TGTGCT-ACTTTCC-A--T-TT-----GAT-CCTG-TCC-T-TAATA-C--GC-C-A-AAT-G------CT-CATC-GATGTCCTTTCTGC-AA-A--CTCTT-AACAGCTA-TTGCG-TTCCGT-C-T-GCA-TTA-A-T---A-AGT--AA------TGC-GG-TATG-GAACACAGTAAGGG-TGATAC-TGAATTT-GCCA-AAAA------T-TGAT-A-AA-TTTA-G-AT--GATCA-TATCTTGAAAACGC-GCCAA-CAT-AAATATGT-CAAA-CAAC-CGT-----CGTTTA-----C-CTTTATTTTTTTTTTT----AC--ACACTTTC--AAGAAAA--TCAT--A--GTGT-TGA-AA--AATCCCCAGA-GG--------GGGGA-G-------GTAA-TGTGTTACTGG--C-CC-ACGGTCT
gi|4 : GGGCTCTAACCATTTAATCTCAGCTTCAAA-ATTTTTTGAATAACTGA-GCTTGAAAGATTTGTTATGTCAGCAATCCTTT-CAAT-TGTTCTAATTGTGACG-ACAAAT--TTT-TATGCTGATTTTTATTTTATGGG---AAGCTT--GAAACAGATTTC-TTACGGACTAAAGAT----------TGGCA-ATGGG-TTTTTTTTCTACG--------TCACATAAA--GT-AT-AG--AAAT-AAAAT--AGTA--TA-A--CAATT-TTACG-T--ATGG-----C-GTA----TATTTATCT-----TTTATATAAATATAG-ATATATTTCATA-AATTACAT-T--T---G--AT---GATATTATTTAATTGTTTTGTCT-GGTATT----GT-TCA-TATCTCT-G-C--AGCTAAATA----AT-----T----AT--------T---TAT-----ATT-----A--CTATTT-T-GC----AT-TATATGC-TC--AAGA--GTCCAT-AGCGTT-CTTTTTGCTGAT-T---ATATTATACATTAA-TGGG-CTCC-A--C--ATCATAAA-GA-ATG-G--AACG--GCCAG-TAATTAAGTA----C-TTTA-ATT-GAAGTT-ATA-TTTACTAAG---GCT-AA-TCAAGAT-T-GTATATTAT---CCAAG--TCAT-------AC------TTT-A-TATAATT-A--A--A-TTGGTCTGAACTACATCG-TTGTTTTTCAGACTATCCA-CTTTATT-CAAT---TAG----ACA---TAGCA-ATTG--CA-T----------G-A---T----ACAT-G-TTATA---ATATT-AGGTG-GTGGAATA-AGAGTTTTGGGAATGTAAAGT--CAA-TGACAAGGG-CAAAACA--TG-A-TAAA-AATGTA--------TCTT-----C-GC-AGTC--AT-TAA-TGTGCT-ATATTCC-A--T-ACACTCGGAT-CCAGCTCCTT-CT----C--TC-T-A-AAT-
gi|5 : aggcttatacttcctcaatactgtaatgtttgtttcaatcattaatatgtgtaaatccataaattgacataaatgcaatggaaagtatgcgtttcggaatacaataatgtttgtactatccttCTAAATA----ATGATAATGGCAAT--------T---TAT-----ATTTCCACC--CTATTT-TAGC----AA-TTTATGCCTCCAAAGC--ATCCATGCACTTTTCTTTTTGCTGAT-T---A---TAT-CATTAAATGGGCTCAC-A--TA-CTT--AAATGACATG-G-AAGCCCTGCCAG-TAATTA--CA----T-TTTACATTGGAA-TT-ATA-TTTACTAAG-GTGTT-AACTCAAGAT-T-CTGTATTGTA--CAAAG--TCATCACATGTAC------TTT-G-TAGAAAT-G--ACC--TT-----------CATCT-T--------A-------CG-CTTTAT--CAATA-CTTGCC--ACC---TAGCA-CCTG-CCAAT----------A-ATG-T----GCAT-G---------------------------TA-A-GGCT-----------AGGT--CAA-TG-CAA-GG-C-ACAAA--TGAA-AAAATAATATGAAGAATTTTC-T-----T-GC-AGTC--ATGTA--TGTGCTTACTTTCCCACCT-AT-----GAT-ACTG-TTC-TTCTATA-TG-TC-T-ATAAT-GTA-TTGCT-CATC-GATGTCCTTTCTGC-AA-A--CTCTTTAAAAGCTG-TTGTAATTTCGT-C-T-GCA-TTA-AATACAA-AGT--AA------TGC-GG-TATGCGAACACAGTAATGGCTTATAC-TGAATTT-GCCA-AAA-------T-TGAT-A-AAATTCA-AGAT--GATCAATATCTTGAAAACGC-CCCAAACATGAAA-TTGT-CAAAACAAC-TGC-----CGTTTA-----CACTTTA-----TTTTTT----ACC-AC-CTTTC--AA-AAAAGATCAT--A--GTGA-AGA-AA--AATCCT-AGA-GG--------GGGGGCG-------GTAT-TGTGTTACTGG--C-CCGATGGTCTttccta
gi|6 : CTAAATA----AT-----G----ATAAATGGCAT---TAT-----ATTTCC--C---TATTT-TAGC----A--TTTATGC-TCCAA-GA--ATCCATGCACTTT-CTTTT-GCTGAT-T---A---TATA-ATTAA-TGGGCCTCC-A--TA--TT--AAA-GACATG-G-AAGCCT-GC-AG-TAATTAA-CA----T-TTTACATTGGAAGTT-ATA-TTTACTAAG-GTGTT-AACTCAA-AT-T-CTGTATTGTA--CAAAG--TCAT-------ACATGTACTTT-G-TAGAAATTG--AC---TT-----------CATCT-T--------A-------CG-CTTTATT-CAATA-CTTGC---ACC---TAGCA-CCTG-CCA-T----------A-AT----------T-G-C-------ATG-T-A----------------AGCT-----------AGGT--CAA-TGGCAA-GG-C-ACAAA--TGAA-AAAA-AATGAAAAAAT---TT-T-----CTGC-AGTC---TGTAAATGTGCT-ACTTTCC-A--T-ATAA---GAT-ACTG-TCT-T-CTATA-TATTC-T-A-AAT-GTA-TTGCT-CATC-GATGTCCTTTCTGC-AA-A--CTCTT-AAAAGCTG-TTGTA-TTTCGT-CCT-GCA-TTA-A-TACAA-AGT--AA-------GC-GG-TATG-GAACACAGTAATGG-CTATAC-TGAATTT-GCCA-AAA-------T-TGAT-A-AA-TTCA-A-AT--GATCA-TATCTTGAAAACGCGCCCAA-CATG-AAATTGT-CAAA-CACA-TGC-----CGTTTA-----C-CTTTA-----TTTTTT----AC--ACACTTTC--AA-AA-A--TCAT--A---TGTAAGA-AA--AATCCCTAGAGGG--------GGGGA-G-------GT-T-TGTGTTACTGG--C-CC-ATGGT
gi|7 : TTAA-CA----T-TTTGCAT-GGAAGTTTATA-TTTACCTAG-GTGTT-AATTCAAGAT-TGCTGTACTGTA--C-AAG--TCATACATGTAAC------TTT-GTTAGAAAT-T--AC---TT-----------CATCGTT--------A-------CG-CTTTATT-CAATA-CTTGC---ACC---TA-CA--CTG-CCA-T----------AGATTCT----GCAT-G--TAT---TCTA-T-GAG-A-G----ATGTA-AGCT-----------AGGT--CAATTGGCAA-GGCC-ACAAA--TAAA-AAAA-GATA-A--------TC-TTGGAAT-GC-AGTC--ATG-AA-AGTGGC-A-TTTTC-A--TAAT-----GATACTTG-CCT-T-CTATAGT--TC-CTA-AAT-GTATTT-TT-CA-C-GATGTCCTTTCTGCAAA-A--CTCTT-AAAAGCTGCTTGTA-TTTCGT-C-TAGCT-TTGCA-TACAAGAGTAAAA------TGC-GGTTATG-GAACACAGTAA-GG-CTATACTTGAATTTGGCCAGAAAA------TATGATAA-AA-TTC----------------------AAACGC-CCCAA-CAT-AAAATTGT-CAAA-CAACTTGT-----CG-TTA-----C-C-TTA-----TTTTTT----AC--ACACTTTC--AA-AATA--TCAT--A--GTGT-CAG-AACCAAT-CCTAGA-G
gi|8 : TATT-CAATA-CTAGC---ACA---TAGCA-CCTG-CCA-T----------G-AT--C----ACAT-GGCTATA--TATA-TTAGGTA-G----ATA-A-AGTTTTGGGAATGTAAGGT--CAA-TGACAA-GG-C-AAACA--TGAATAAAA-AATGTA--------TC-T-----C-GC-AGTC--ATGTAA-TGTGCT-ACTTTCC-A--T-AT-----GAT-CCTG-TCC-T-CTATA-T--TC-C-A-AAT-G------CT-CATC-GATGTCCATTCTGC-
gi|9 : CCCA-T-TCCCT-A-C--AGCTAAATC----AT-----T----AT--------T---CAT-----AGTTCC--C--CTAGTT-TAGC----A--CTTATGC-TCCAAAGA--GTCCACGAACGTT-CATTTTGCTGAT-T---A---TATACATTAA-TGGGCCTCC-A--