lowQualScore : 11 1 22222 11 1 4444 111 1111111111111 2222
lowQualScore : 33 0 88 88888 6 6 55 6 6 3 1111 5 5 5 0 5 000 8888888888888 3 3 3 3333 2 2 2 2 2 22 6666 6 2 2 2 88 2 88888 2 6 888888 4444 999999999999999999 22 999 2 2 33 2 4 2 2 2
lowQualScore : .. . .. ..... . . .. . . . .... . . . . . ... ............. . . . .... . . . . . .. .... . . . . .. . ..... . . ...... .... .................. .. ... . . .. . . . . .
lowQualScore : 88 0 88 00000 7 7 88 7 7 3 4444 7 7 7 1 7 111 2222222222222 6 1 1 7777 1 1 1 1 1 99 2222 0 0 0 0 44 1 99999 1 3 222222 5555 666666666666666666 99 222 2 2 11 2 4 2 4 9
consensus : NNTTTTGTC--TC-TCTT-TTGGTTTTT----GTGTAC-A-TG--TATATA-T-GCATGCTA-TGTTTTT---G-T-C-TTAATTT-AATACATGTTTT--T--AA----TNTA-TGTG-AT-A-N--TCGGATAAA-AA-GCT-C-T-A--C----A-GAGCTT-G-TG-TTGNT-T-----G-TT-ATA------T----G----------T-A-----T--ATAG---T-A-C--CGA-C-TTTAAAT-AAA-ATTTAC-TTACT
Reference ( gi|6 ) : GATTTTGTC--TC-TCTT-TTGGTTTT-----GTGTAC-A-TG--TATATA-T-GCATGTTA-TGTTTT----G-T-C-TTAATTT-AATACATATCTT--T--AA----TTTA-TGTG-AT-A-T--TCGGATAAA-AA-GCT-C-T-A--C----A-GAGCTT-G-TG-TTGAT-T-----G-TT-ATA------T----G----------T-A-----T--ATAA---T-A-C--CGA-C-TTTAAAT-AAA-ATTTAC-TTACT
gi|5 : TTTTGTT--TC-TCTT-TTGCTTTT-----ATGTAC-A-TG--TATATA-T-GCATGCTAATGTTTTTTTTG-T-CCTTAATTC-AATACATGTTTT--A--AA----AGTA-TGCG-AT-A-TAGTCGGATAAA-AA-GCT-C-T-A--C----A-GAGCTT-A-TG-TTTTT-T-----G-TT-ATG------T----G----------T-A-----T--ATAG---T-A-C--CGA-C-TTTAAAT-AAA-ATTTAC-TTACT
gi|3 : ttgtagtattgtatagaattccacaatcatgtaatgttttagTTTTGTC--TC-TTTT----GTTTT-----GTGTA--A-TG--TATATA-TTGCATGT-A-TCGTTT----G-T-T-TTAATTT-AATAATTATCTT------A----TTT--TGTG-AT-A-A--TCG-ATAAA-AA-GCT-C-T-A--C----ACGAGCTT-G-TG-TTGAT-T-----G-TT-ATA------T----A----------T-A-----T---TAA---T-A-C--AGA-CTTTTAAAT-AAA-ATTTACTTTACTt
gi|2 : ctttttcttattttgcatcgttgatgggttttttttttctttcttgagtatgtttttagtaaacctttctcagagctttttatttatgtaatgttgtcagtgtcttgcagagaaatttttattttttgactatatgtgttcttaacttttttatctaggctattattaatttcttacacatgcaatttttatgttcttttgtttaaattttgttggctgcttatatgacttcacttctgtttgtgttgtttttattcttcctttatatctatgtgctttttcttattgatatatatctttgcatgaattgttacTTTTCTC--TC-TTTT-TTAGTCTTTACTAGT-TAC-A-TGA-TGTATA-T--CAGTTTA-TGTTTTT---G-T-C-T-AATTT-AATACATGTTTTAGT--AG----TATG-TCTA-ATGA-G--TCGGATAAA-AAAGCT-CAT-A--C----ACGAGCTT-G-TG-TTTTTCT-----G-TTTATA------TTGTAG----------T-AC----T--ATGG---T-A-C--CGA-C-TTTAAATAAAA-ATTTAC-TTACT
gi|4 : ttttttattttatttttagtaaacctttctcgaactttcttatttactgtaatgtcttgtcaagtcttaaacagagtaaatttcttatttttgactcatattcataatttctaaacttttttactagactattattcaatttcctttaccattaccaattttatgtaaactgtctgggtctttagagatcgtaatcacatcagctaattaaatccgattagagtttttggttaaatttgtgggctgattttaatatttacttcactatctgttttattgttgtgctgtatatctgtatatattctatgcataaattgttttactTTTTGTCGCTCATCTTGTTGGTTTTT----ATGTGC-AGTG--TATATAGT-GCATGCTAGTGTTTTT---G-TAC-TTAATTT-AATACGT---TT--TGAAA----GGTA-TGTG-AC-A--------AAGGA-AA-GCT-C-T-AGGC----ACGAGCGT---TG-GTGGT-TTTTTGG-TT-ATA------T----G----------T-A-----TGAGTAG---TGA-C--CGA---TTTAAAT--AA-ATTTAgt
gi|1 : gtattgatttaattctgttttatgttgtgcttatatctgtagatatattctttggcataatgtttaggcTT-TTGGTCTT-----GTGTAC-A-TGCTTATATA-T-GCATGTTC-TATCTCTCTCGCT-C-TCAATTTTAATACATGTTTT--T--AAAAAATTTA-TGTG-AT-A-A--TCGGATAAA-AA-GCT-C-T-G--CCGGCA-GAGCTT-G-TG-TTGTT-T-----G-TT-ATACATGTAT----G----------T-A-----T--ATAA---T-A-C--CGA-C-TTTAAAT-AAA-ATTTAC-aactacgttactt
gi|7 : cttttttcgtctaattctttcgttgactgtgttttgtgtatagagtttctttgcttgcgcatggttttctttagtagaactcttattctcagtcttatgtttatttctttaatgtaatgtactatcgcaacgtgctcttgcgagtaattttttatcttttagacttatatttacgattaattttctacttttctctctatgactatctaatcaattctttacaatgcaaatttttactcgctgcttctctcgctgtaaatttattttttgttttctgctggtgtgtgtggtgcacgttctagtttcatactattgtgttttatacttagtctcgtacttagattattcttggccattaaatgtctctcacttgttgtcgtgtgctTGTACCA-TG--TATATA-T-GCATGCTA-CGTTTTT---G-T-C-TTAATTT-AATACATGTTTT--A--AA----AGTA-TGTG-AT-A-TAGTCGGATAAA-AA-GCT-C-T-A--C----A-GAGCTT-G-TG-TTTTT-T-----G-TT-ATA------T----G----------T-A-----T--ATAG---T-A-C--CGA-C-TTTAAAT-AAA-ATTTAC-TT
gi|10 : tcatacaGTTTT----G-T-C-TTAATTT-AATACATGT-TT--T--AA----AGTA-TGTG-AT-A-TA-TCAGATAAA-AA-GCT-C-T-A--C----A-GAGCTT-GTTG-TTT-T-T-----T-TT-ATA------T----G----------T-A-----T--ATAAT--T-A-C--CGA-C-TTTAATT-AAA-ATTTAC-TTATT
gi|15 : TCTT--T--TA----TTTA--GTGTAT-A-G--TCGGATAAA-A---CT-C-T-A--C----A-GC-CTT-G-TG-T-GAT-T-----G-TA-ATA------T----G----------T-A-----T--AAAA---C-A-C--CGA-C--TTAAAT-AAA-ATTTAC-CGACTa
gi|13 : TT--T--GA----TTTAGTGTG-AT-AGT--TCGGATAAAGAA-GCT-C-T-A--C----A-G--CTT-G-TG-TTGAT-T-----G-TTAATAG-----T----G----------T-------T--AAAA---C-A-C--CGA-CTTTTAAAT-AAA-ATTT
gi|16 : ct----TTTA-TTTG-AT-A-G--TCGGA-AAA-AA-GCT-C-C-A--C----A-G-GCTTGG-TGATTGAT-T-----G-TT-AT-------T----G----------T-A-----T--ATAG---T-A-C--CGATC-TATAAAT-AAA-A-TTAC-TTcacctgaact
gi|28 : t-TGTG-AT-A-G--TCGGATAAA-AA-GCT-T-T-A--C----A-GACCTT-G-TG-TT
gi|12 : -AT-A-TG-TCGGATAAA-AA-GCTTC-T-A--C----A-GAGCTT-G-TG-TTTTT-TTGG--G-TT-ATA------T----GGCCCTCACTTT-A--------ATAAGT-T-A-C--CGA-C-TTTAAAT-AAA-ATTTAC-TTA
gi|11 : aaa-AT-A-G--TTGGTTAAA-GA-GC--C-A-A--TT---A-GAGCTC-A-TA-TCTAT-C-----G-TTCAT-------T----G---------------------ACAAATGT-G-C--TGG-C-TCTAAAT-GAA-ATTTAC-TTACactt
gi|20 : tacatgtttatatcactat--TCGGATAAA-AA-GCT-C-T-A--C----A-GAGCTT-G-TG-TTTTT-T-----G-TT-AAA------T----G----------T-A-----T--ATAG---T-A-C--CGA-C-TTTAAAT-AAA-ATTTAC-atact
gi|18 : g--TCGGTTAAA-AA-GCT-C-TTA--C----A-GAGTTT-G-TG-TTGTC-T-----GTTT-ATA------T----G----------TAA-----T--ATAG---T-A-CCTCGA-C-TTTAAAT-AAACAATTAC-
gi|21 : agGATCAA-AA-GCT-C-T-A--C----A-GAGCTT-A-TG-TT-AC-T-----G-TT-TTA-----------------------------------AA---T-ATC--CGA-C-TTCAAAT-AAA-ATTTTC-
gi|19 : ATAAA-AA-GCT-C-T-A--C----A-GAGCTT-G-TG-TTGAT-T-----G-TT-ATA------T----G----------T-ATAATCT--ACAG---T-A-C--CGA-C-TTTAAAT-AAA-ATTTAC-
gi|22 : tcATCAA-AT-ACT-C-T-A--C----A-GAGCTT-A-TG-TT-AC-T-----G-TT-GTA------T----A----------T-A-----T-------------C--CGA-C-TATAAAT-AAA-
gi|27 : AA-AA-GCT-G-T-A--C----A-GAGCTT-G-TG-TTGAT-T-----G-TT--TA------T----G----------T-A-----C--ATtt
gi|24 : ----A-GAGCTT-G-TG-TTGAC-T-----G-TT-ATA------T----G----------T-A-----T--GTAG---T-A-C--CAA-C-TTTAAAT-Atg
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TTCTTATATTTCAATTTTATTTCAGCGTTTTTCATGAATAGTTTCACTGTTACATTAAATTTCCTTCTACTATTGCAATTTTTATGTTGCTTTTGTTGAAATTTTGTTACTTTGTCTCTCTTGTTGGTTTTG
Unaligned ( gi|9 ): ATGCAAATTTTTATGTTGCTTTTGTTAAAAATTTTGTTGGCTGCTTTTAAAAGACTTTCACTTCTGTTTTGTGTTGTTTTTTATTCTTCCATTAAATCTTGTGCTTTATCTTTATCTGTAT
Unaligned ( gi|14 ): CTTGCAGAGAAATTTTTATTTTTGACTTATGTTCATAAATTCTAAACTTTTTTTTTATCTAGACTATTTTAAAATTTCCTTTACTATGCAAATTTTTATGC
Unaligned ( gi|17 ): ATGCTCAAGACACATCTTATGCATCATGCATGCTTATTCATACTGCTTTATGTTGTAACCTGTATAAAGTGTATATACACGTT
Unaligned ( gi|23 ): TTATTCTGAGAATCCTTTCAAAAGTTGCAAAACCATAATAAAGTGTGAAAA
Unaligned ( gi|25 ): TATTTTTATTATTTGTTATTTTGTAAATATGTATGTAAATATGTTA
Unaligned ( gi|26 ): TTTTATTTTAATTTATTCATAAAATGATAAATGCAGTGTTGGAT
Alignments
lowQualScore : 11 22222 11 1 1111 11111111111111 1111 1111111111
lowQualScore : 11 8 3 6 6 11111 5 5 33 5 5 999 1 5 3333 5 5 5 5 66666666666666 3 2 2 3333 2 2 2 2 2 2 22 6666 5 1 3 1 66 2 7777 2 6 777777 4444 0000000000 2 77777 22 55 2 22 2 2 2 2 2 2
lowQualScore : .. . . . . ..... . . .. . . ... . . .... . . . . .............. . . . .... . . . . . . .. .... . . . . .. . .... . . ...... .... .......... . ..... .. .. . .. . . . . . .
lowQualScore : 00 0 2 7 7 55555 7 7 66 7 7 666 4 7 9999 0 0 0 0 99999999999999 1 9 7 0000 5 0 0 0 0 0 88 0000 7 9 8 9 00 0 8888 0 0 888888 2222 8888888888 0 00000 88 00 1 99 1 1 1 1 2 7
consensus : NNTTTTGTC--TC-TCTT-TTGGTTTTT----GTGTAC-A-TG--TATATA-T-GCATG--CTA-T-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--T-A--A----TNTA-TGTG-AT-A-G--T-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGNT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACT
Reference ( family-617 ) : NNTTTTGTC--TC-TCTT-TTGGTTTTT----GTGTAC-A-TG--TATATA-T-GCATG--CTA-T-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--T-A--A----TNTA-TGTG-AT-A-N--T-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGNT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACT
gi|1 : TT-TTGGTCTT-----GTGTAC-A-TGCTTATATA-T-GCATGTTCTA-T-CTCTCTC--GCT-C-TCAATTTTAATACATGTTTT--T-A--AAAAATTTA-TGTG-AT-A-A--T-CGGATAAA-AA-GCT-C-T-G--CCGGCA-GAGC-TTG-TG-TTGTT-T----G-TT-ATACATGTAT----G----------T-A-----T--ATAA--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-
gi|10 : cttttttcgtctaattctttcgttgactgtgttttgtgtatagagtttctttgcttgcgcatggttttctttagtagaactcttattctcagtcttatgtttatttctttaatgtaatgtactatcgcaacgtgctcttgcgagtaattttttatcttttagacttatatttacgattaattttctacttttctctctatgactatctaatcaattctttacaatgcaaatttttactcgctgcttctctcgctgtaaatttattttttgttttctgctggtgtgtgtggtgcacgttctagtttcatactattgtgttttatacttagtctcgtacttagattattcttggccattaaatgtctctcacttgttgtcgtgtgctTTTT---G-T-C-TTAATTT-AATACATG-TTT--T-A--A----AGTA-TGTG-AT-ATA--T-CAGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTGTTG-TT-TT-T----T-TT-ATA------T----G----------T-A-----T--ATAAT-T-AC--CGA-C-TTT-AATT-AAA-ATTTAC-TTATT
gi|11 : gTACATGTTTA--T-ATCA-----CTA-T----AT-A-G--T-TGGTTAAA-GA-GC--C-A-A--TT---A-GAGC-TCA-TA-TCTAT-C----G-TTCAT-------T----GA---------C-A-----A--AT-G--T-GC--TGG-C-TCT-AAAT-GAA-ATTTAC-TTACa
gi|12 : -AT-A-TG-T-CGGATAAA-AA-GCTTC-T-A--C----A-GAGC-TTG-TG-TTTTT-TTGG-G-TT-ATA------T----GGCCCTCACTTT-A--------ATAAGTT-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTAatact
gi|13 : aaaTTT--T-G--A----TTTAGTGTG-AT-A-G--TTCGGATAAAGAA-GCT-C-T-A--C----A-G--C-TTG-TG-TTGAT-T----G-TTAATAG-----T----G----------T-------T--AAAA--C-AC--CGA-CTTTT-AAAT-AAA-ATTTactt
gi|15 : cTCTT--T-T--A----TTTA--GTGTAT-A-G--T-CGGATAAA-A---CT-C-T-A--C----A-GC-C-TTG-TG-T-GAT-T----G-TA-ATA------T----G----------T-A-----T--AAAA--C-AC--CGA-C--TT-AAAT-AAA-ATTTAC-CGACTcacctgaact
gi|16 : ----TTTA-TTTG-AT-A-G--T-CGGA-AAA-AA-GCT-C-C-A--C----A-G-GC-TTGGTGATTGAT-T----G-TT-AT-------T----G----------T-A-----T--ATAG--T-AC--CGATC-TAT-AAAT-AAA-A-TTAC-TT
gi|18 : t-A-G--T-CGGTTAAA-AA-GCT-C-TTA--C----A-GAGT-TTG-TG-TTGTC-T----GTTT-ATA------T----G----------TAA-----T--ATAG--T-ACCTCGA-C-TTT-AAAT-AAACAATTAC-
gi|19 : ATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----G----------T-ATAATCT--ACAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-
gi|2 : tcTTTTCTC--TC-TTTT-TTAGTCTTTACTAGT-TAC-A-TGA-TGTATA-T--CAGT--TTA-T-GTTTTT---G-T-C-T-AATTT-AATACATGTTTTAGT-A--G----TATG-TCTA-ATGA-G--T-CGGATAAA-AAAGCT-CAT-A--C----ACGAGC-TTG-TG-TTTTTCT----G-TTTATA------TTGTAG----------T-AC----T--ATGG--T-AC--CGA-C-TTT-AAATAAAA-ATTTAC-TTACT
gi|20 : ttttttattttatttttagtaaacctttctcgaactttcttatttactgtaatgtcttgtcaagtcttaaacagagtaaatttcttatttttgactcatattcataatttctaaacttttttactagactattattcaatttcctttaccattaccaattttatgtaaactgtctgggtctttagagatcgtaatcacatcagctaattaaatccgattagagtttttggttaaatttgtgggctgattttaatatttacttcactatctgttttattgttgtgctgtatatctgtatatattctatgcataaattgttttact--T-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTTTT-T----G-TT-AAA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-gt
gi|21 : gGATCAA-AA-GCT-C-T-A--C----A-GAGC-TTA-TG-TT-AC-T----G-TT-TTA------A----A----------T-A-----T-----------C--CGA-C-TTC-AAAT-AAA-ATTTTC-
gi|22 : ATCAA-AT-ACT-C-T-A--C----A-GAGC-TTA-TG-TT-AC-T----G-TT-GTA------T----A----------T-A-----T-----------C--CGA-C-TAT-AAAT-AAA-
gi|24 : ----A-GAGC-TTG-TG-TTGAC-T----G-TT-ATA------T----G----------T-A-----T--GTAG--T-AC--CAA-C-TTT-AAAT-Att
gi|27 : AA-AA-GCT-G-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT--TA------T----G----------T-A-----C--AT
gi|28 : -TGTG-AT-A-G--T-CGGATAAA-AA-GCT-T-T-A--C----A-GACC-TTG-TG-TTtg
gi|3 : TTTTGTC--TC-T--T-TTG--TTTT----GTGTA--A-TG--TATATA-TTGCATG---TA-TCGTTT-----G-T-T-TTAATTT-AATAATTATCTT-------A----TTT--TGTG-AT-A-A--T-CG-ATAAA-AA-GCT-C-T-A--C----ACGAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----A----------T-A-----T---TAA--T-AC--AGA-C-TTTTAAAT-AAA-ATTTACTTTACT
gi|4 : ctttttcttattttgcatcgttgatgggttttttttttctttcttgagtatgtttttagtaaacctttctcagagctttttatttatgtaatgttgtcagtgtcttgcagagaaatttttattttttgactatatgtgttcttaacttttttatctaggctattattaatttcttacacatgcaatttttatgttcttttgtttaaattttgttggctgcttatatgacttcacttctgtttgtgttgtttttattcttcctttatatctatgtgctttttcttattgatatatatctttgcatgaattgttacTTTTGTCGCTCATCTTGTTGGTTTTT----ATGTGC-AGTG--TATATAGT-GCATG--CTAGT-GTTTTT---G-TAC-TTAATTT-AATAC--GTTTT--GAA--A----GGTA-TGTG-AC-A-A----AGG----A-AA-GCT-C-T-AGGC----ACGAGCGTTG--G-TGGTT-TTTTGG-TT-ATA------T----G----------T-A-----TGAGTAG--TGAC--CGA---TTT-AAAT--AA-ATTTA
gi|5 : gtattgatttaattctgttttatgttgtgcttatatctgtagatatattctttggcataatgtttaggcTTTTGTT--TC-TCTT-TTG-CTTTT----ATGTAC-A-TG--TATATA-T-GCATG--CTAAT-GTTTTTTTTG-T-CCTTAATTC-AATACATGTTTT--A-A--A----AGTA-TGCG-AT-A-TAGT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTA-TG-TTTTT-T----G-TT-ATG------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACTaactacgttactt
gi|6 : ttgtagtattgtatagaattccacaatcatgtaatgttttagTTTTGTC--TC-TCTT-TTGGTTTT-----GTGTAC-A-TG--TATATA-T-GCATG--TTA-T-GTTTT----G-T-C-TTAATTT-AATACATATCTT--T-A--A----TTTA-TGTG-AT-A-T--T-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----G----------T-A-----T--ATAA--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACTt
gi|7 : gaTGTACCA-TG--TATATA-T-GCATG--CTA-C-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--A-A--A----AGTA-TGTG-AT-A-TAGT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTTTT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCTTATATTTCAATTTTATTTCAGCGTTTTTCATGAATAGTTTCACTGTTACATTAAATTTCCTTCTACTATTGCAATTTTTATGTTGCTTTTGTTGAAATTTTGTTACTTTGTCTCTCTTGTTGGTTTTG
Unaligned ( gi|9 ): ATGCAAATTTTTATGTTGCTTTTGTTAAAAATTTTGTTGGCTGCTTTTAAAAGACTTTCACTTCTGTTTTGTGTTGTTTTTTATTCTTCCATTAAATCTTGTGCTTTATCTTTATCTGTAT
Unaligned ( gi|14 ): CTTGCAGAGAAATTTTTATTTTTGACTTATGTTCATAAATTCTAAACTTTTTTTTTATCTAGACTATTTTAAAATTTCCTTTACTATGCAAATTTTTATGC
Unaligned ( gi|17 ): ATGCTCAAGACACATCTTATGCATCATGCATGCTTATTCATACTGCTTTATGTTGTAACCTGTATAAAGTGTATATACACGTT
Unaligned ( gi|23 ): TTATTCTGAGAATCCTTTCAAAAGTTGCAAAACCATAATAAAGTGTGAAAA
Unaligned ( gi|25 ): TATTTTTATTATTTGTTATTTTGTAAATATGTATGTAAATATGTTA
Unaligned ( gi|26 ): TTTTATTTTAATTTATTCATAAAATGATAAATGCAGTGTTGGAT
Alignments
lowQualScore : 11 22222 11 1 1111 11111111111111 11 1111111111
lowQualScore : 11 8 3 6 6 11111 5 5 33 5 5 999 1 5 3333 5 5 5 5 66666666666666 3 2 2 11 2 2 2 2 2 2 22 6666 5 1 3 1 66 2 7777 2 6 777777 4444 0000000000 2 77777 22 55 2 22 2 2 2 2 2 2
lowQualScore : .. . . . . ..... . . .. . . ... . . .... . . . . .............. . . . .. . . . . . . .. .... . . . . .. . .... . . ...... .... .......... . ..... .. .. . .. . . . . . .
lowQualScore : 00 0 2 7 7 55555 7 7 66 7 7 666 4 7 9999 0 0 0 0 99999999999999 1 9 7 99 5 0 0 0 0 0 88 0000 7 9 8 9 00 0 8888 0 0 888888 2222 8888888888 0 00000 88 00 1 99 1 1 1 1 2 7
consensus : NNTTTTGTC--TC-TCTT-TTGGTTTTT----GTGTAC-A-TG--TATATA-T-GCATG--CTA-T-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--T-A--A----TNTA-TGTG-AT-A--GT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGNT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACT
Reference ( family-617 ) : NNTTTTGTC--TC-TCTT-TTGGTTTTT----GTGTAC-A-TG--TATATA-T-GCATG--CTA-T-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--T-A--A----TNTA-TGTG-AT-A--GT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGNT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACT
gi|1 : TT-TTGGTCTT-----GTGTAC-A-TGCTTATATA-T-GCATGTTCTA-T-CTCTCTC--GCT-C-TCAATTTTAATACATGTTTT--T-A--AAAAATTTA-TGTG-AT-A--AT-CGGATAAA-AA-GCT-C-T-G--CCGGCA-GAGC-TTG-TG-TTGTT-T----G-TT-ATACATGTAT----G----------T-A-----T--ATAA--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-
gi|10 : cttttttcgtctaattctttcgttgactgtgttttgtgtatagagtttctttgcttgcgcatggttttctttagtagaactcttattctcagtcttatgtttatttctttaatgtaatgtactatcgcaacgtgctcttgcgagtaattttttatcttttagacttatatttacgattaattttctacttttctctctatgactatctaatcaattctttacaatgcaaatttttactcgctgcttctctcgctgtaaatttattttttgttttctgctggtgtgtgtggtgcacgttctagtttcatactattgtgttttatacttagtctcgtacttagattattcttggccattaaatgtctctcacttgttgtcgtgtgctTTTT---G-T-C-TTAATTT-AATACATG-TTT--T-A--A----AGTA-TGTG-AT-AT-AT-CAGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTGTTG-TT-TT-T----T-TT-ATA------T----G----------T-A-----T--ATAAT-T-AC--CGA-C-TTT-AATT-AAA-ATTTAC-TTATT
gi|11 : gTACATGTTTA--T-ATCA-----CTA-T----AT-A--GT-TGGTTAAA-GA-GC--C-A-A--TT---A-GAGC-TCA-TA-TCTAT-C----G-TTCAT-------T----GA---------C-A-----A--AT-G--T-GC--TGG-C-TCT-AAAT-GAA-ATTTAC-TTACa
gi|12 : -AT-AT-GT-CGGATAAA-AA-GCTTC-T-A--C----A-GAGC-TTG-TG-TTTTT-TTGG-G-TT-ATA------T----GGCCCTCACTTT-A--------ATAAGTT-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTAatact
gi|13 : aaaTTT--T-G--A----TTTAGTGTG-AT-A--GTTCGGATAAAGAA-GCT-C-T-A--C----A-G--C-TTG-TG-TTGAT-T----G-TTAATAG-----T----G----------T-------T--AAAA--C-AC--CGA-CTTTT-AAAT-AAA-ATTTactt
gi|15 : cTCTT--T-T--A----TTTA--GTGTAT-A--GT-CGGATAAA-A---CT-C-T-A--C----A-GC-C-TTG-TG-T-GAT-T----G-TA-ATA------T----G----------T-A-----T--AAAA--C-AC--CGA-C--TT-AAAT-AAA-ATTTAC-CGACTcacctgaact
gi|16 : ----TTTA-TTTG-AT-A--GT-CGGA-AAA-AA-GCT-C-C-A--C----A-G-GC-TTGGTGATTGAT-T----G-TT-AT-------T----G----------T-A-----T--ATAG--T-AC--CGATC-TAT-AAAT-AAA-A-TTAC-TT
gi|18 : t-A--GT-CGGTTAAA-AA-GCT-C-TTA--C----A-GAGT-TTG-TG-TTGTC-T----GTTT-ATA------T----G----------TAA-----T--ATAG--T-ACCTCGA-C-TTT-AAAT-AAACAATTAC-
gi|19 : ATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----G----------T-ATAATCT--ACAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-
gi|2 : tcTTTTCTC--TC-TTTT-TTAGTCTTTACTAGT-TAC-A-TGA-TGTATA-T--CAGT--TTA-T-GTTTTT---G-T-C-T-AATTT-AATACATGTTTTAGT-A--G----TATG-TCTA-ATGA--GT-CGGATAAA-AAAGCT-CAT-A--C----ACGAGC-TTG-TG-TTTTTCT----G-TTTATA------TTGTAG----------T-AC----T--ATGG--T-AC--CGA-C-TTT-AAATAAAA-ATTTAC-TTACT
gi|20 : ttttttattttatttttagtaaacctttctcgaactttcttatttactgtaatgtcttgtcaagtcttaaacagagtaaatttcttatttttgactcatattcataatttctaaacttttttactagactattattcaatttcctttaccattaccaattttatgtaaactgtctgggtctttagagatcgtaatcacatcagctaattaaatccgattagagtttttggttaaatttgtgggctgattttaatatttacttcactatctgttttattgttgtgctgtatatctgtatatattctatgcataaattgttttact--GT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTTTT-T----G-TT-AAA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-gt
gi|21 : GATCAA-AA-GCT-C-T-A--C----A-GAGC-TTA-TG-TT-AC-T----G-TT-TTA------A----A----------T-A-----T-----------C--CGA-C-TTC-AAAT-AAA-ATTTTC-
gi|22 : ATCAA-AT-ACT-C-T-A--C----A-GAGC-TTA-TG-TT-AC-T----G-TT-GTA------T----A----------T-A-----T-----------C--CGA-C-TAT-AAAT-AAA-
gi|24 : ----A-GAGC-TTG-TG-TTGAC-T----G-TT-ATA------T----G----------T-A-----T--GTAG--T-AC--CAA-C-TTT-AAAT-Att
gi|27 : AA-AA-GCT-G-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT--TA------T----G----------T-A-----C--AT
gi|28 : -TGTG-AT-A--GT-CGGATAAA-AA-GCT-T-T-A--C----A-GACC-TTG-TG-TTtg
gi|3 : TTTTGTC--TC-T--T-TTG--TTTT----GTGTA--A-TG--TATATA-TTGCATG---TA-TCGTTT-----G-T-T-TTAATTT-AATAATTATCTT-------A----TTT--TGTG-AT-A--AT-CG-ATAAA-AA-GCT-C-T-A--C----ACGAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----A----------T-A-----T---TAA--T-AC--AGA-C-TTTTAAAT-AAA-ATTTACTTTACT
gi|4 : ctttttcttattttgcatcgttgatgggttttttttttctttcttgagtatgtttttagtaaacctttctcagagctttttatttatgtaatgttgtcagtgtcttgcagagaaatttttattttttgactatatgtgttcttaacttttttatctaggctattattaatttcttacacatgcaatttttatgttcttttgtttaaattttgttggctgcttatatgacttcacttctgtttgtgttgtttttattcttcctttatatctatgtgctttttcttattgatatatatctttgcatgaattgttacTTTTGTCGCTCATCTTGTTGGTTTTT----ATGTGC-AGTG--TATATAGT-GCATG--CTAGT-GTTTTT---G-TAC-TTAATTT-AATAC--GTTTT--GAA--A----GGTA-TGTG-AC-A--------AAGGA-AA-GCT-C-T-AGGC----ACGAGCGTTG--G-TGGTT-TTTTGG-TT-ATA------T----G----------T-A-----TGAGTAG--TGAC--CGA---TTT-AAAT--AA-ATTTA
gi|5 : gtattgatttaattctgttttatgttgtgcttatatctgtagatatattctttggcataatgtttaggcTTTTGTT--TC-TCTT-TTG-CTTTT----ATGTAC-A-TG--TATATA-T-GCATG--CTAAT-GTTTTTTTTG-T-CCTTAATTC-AATACATGTTTT--A-A--A----AGTA-TGCG-AT-ATAGT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTA-TG-TTTTT-T----G-TT-ATG------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACTaactacgttactt
gi|6 : ttgtagtattgtatagaattccacaatcatgtaatgttttagTTTTGTC--TC-TCTT-TTGGTTTT-----GTGTAC-A-TG--TATATA-T-GCATG--TTA-T-GTTTT----G-T-C-TTAATTT-AATACATATCTT--T-A--A----TTTA-TGTG-AT-A--TT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----G----------T-A-----T--ATAA--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACTt
gi|7 : gaTGTACCA-TG--TATATA-T-GCATG--CTA-C-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--A-A--A----AGTA-TGTG-AT-ATAGT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTTTT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCTTATATTTCAATTTTATTTCAGCGTTTTTCATGAATAGTTTCACTGTTACATTAAATTTCCTTCTACTATTGCAATTTTTATGTTGCTTTTGTTGAAATTTTGTTACTTTGTCTCTCTTGTTGGTTTTG
Unaligned ( gi|9 ): ATGCAAATTTTTATGTTGCTTTTGTTAAAAATTTTGTTGGCTGCTTTTAAAAGACTTTCACTTCTGTTTTGTGTTGTTTTTTATTCTTCCATTAAATCTTGTGCTTTATCTTTATCTGTAT
Unaligned ( gi|14 ): CTTGCAGAGAAATTTTTATTTTTGACTTATGTTCATAAATTCTAAACTTTTTTTTTATCTAGACTATTTTAAAATTTCCTTTACTATGCAAATTTTTATGC
Unaligned ( gi|17 ): ATGCTCAAGACACATCTTATGCATCATGCATGCTTATTCATACTGCTTTATGTTGTAACCTGTATAAAGTGTATATACACGTT
Unaligned ( gi|23 ): TTATTCTGAGAATCCTTTCAAAAGTTGCAAAACCATAATAAAGTGTGAAAA
Unaligned ( gi|25 ): TATTTTTATTATTTGTTATTTTGTAAATATGTATGTAAATATGTTA
Unaligned ( gi|26 ): TTTTATTTTAATTTATTCATAAAATGATAAATGCAGTGTTGGAT
Alignments
lowQualScore : 11 22222 11 1 1111 11111111111111 11 1111111111
lowQualScore : 11 8 3 6 6 11111 5 5 33 5 5 999 1 5 3333 5 5 5 5 66666666666666 3 2 2 11 2 2 2 2 2 2 22 6666 5 1 3 1 66 2 7777 2 6 777777 4444 0000000000 2 77777 22 55 2 22 2 2 2 2 2 2
lowQualScore : .. . . . . ..... . . .. . . ... . . .... . . . . .............. . . . .. . . . . . . .. .... . . . . .. . .... . . ...... .... .......... . ..... .. .. . .. . . . . . .
lowQualScore : 00 0 2 7 7 55555 7 7 66 7 7 666 4 7 9999 0 0 0 0 99999999999999 1 9 7 99 5 0 0 0 0 0 88 0000 7 9 8 9 00 0 8888 0 0 888888 2222 8888888888 0 00000 88 00 1 99 1 1 1 1 2 7
consensus : NNTTTTGTC--TC-TCTT-TTGGTTTTT----GTGTAC-A-TG--TATATA-T-GCATG--CTA-T-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--T-A--A----TNTA-TGTG-AT-A--GT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGNT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACT
Reference ( family-617 ) : NNTTTTGTC--TC-TCTT-TTGGTTTTT----GTGTAC-A-TG--TATATA-T-GCATG--CTA-T-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--T-A--A----TNTA-TGTG-AT-A--GT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGNT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACT
gi|1 : TT-TTGGTCTT-----GTGTAC-A-TGCTTATATA-T-GCATGTTCTA-T-CTCTCTC--GCT-C-TCAATTTTAATACATGTTTT--T-A--AAAAATTTA-TGTG-AT-A--AT-CGGATAAA-AA-GCT-C-T-G--CCGGCA-GAGC-TTG-TG-TTGTT-T----G-TT-ATACATGTAT----G----------T-A-----T--ATAA--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-
gi|10 : cttttttcgtctaattctttcgttgactgtgttttgtgtatagagtttctttgcttgcgcatggttttctttagtagaactcttattctcagtcttatgtttatttctttaatgtaatgtactatcgcaacgtgctcttgcgagtaattttttatcttttagacttatatttacgattaattttctacttttctctctatgactatctaatcaattctttacaatgcaaatttttactcgctgcttctctcgctgtaaatttattttttgttttctgctggtgtgtgtggtgcacgttctagtttcatactattgtgttttatacttagtctcgtacttagattattcttggccattaaatgtctctcacttgttgtcgtgtgctTTTT---G-T-C-TTAATTT-AATACATG-TTT--T-A--A----AGTA-TGTG-AT-AT-AT-CAGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTGTTG-TT-TT-T----T-TT-ATA------T----G----------T-A-----T--ATAAT-T-AC--CGA-C-TTT-AATT-AAA-ATTTAC-TTATT
gi|11 : gTACATGTTTA--T-ATCA-----CTA-T----AT-A--GT-TGGTTAAA-GA-GC--C-A-A--TT---A-GAGC-TCA-TA-TCTAT-C----G-TTCAT-------T----GA---------C-A-----A--AT-G--T-GC--TGG-C-TCT-AAAT-GAA-ATTTAC-TTACa
gi|12 : -AT-AT-GT-CGGATAAA-AA-GCTTC-T-A--C----A-GAGC-TTG-TG-TTTTT-TTGG-G-TT-ATA------T----GGCCCTCACTTT-A--------ATAAGTT-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTAatact
gi|13 : aaaTTT--T-G--A----TTTAGTGTG-AT-A--GTTCGGATAAAGAA-GCT-C-T-A--C----A-G--C-TTG-TG-TTGAT-T----G-TTAATAG-----T----G----------T-------T--AAAA--C-AC--CGA-CTTTT-AAAT-AAA-ATTTactt
gi|15 : cTCTT--T-T--A----TTTA--GTGTAT-A--GT-CGGATAAA-A---CT-C-T-A--C----A-GC-C-TTG-TG-T-GAT-T----G-TA-ATA------T----G----------T-A-----T--AAAA--C-AC--CGA-C--TT-AAAT-AAA-ATTTAC-CGACTcacctgaact
gi|16 : ----TTTA-TTTG-AT-A--GT-CGGA-AAA-AA-GCT-C-C-A--C----A-G-GC-TTGGTGATTGAT-T----G-TT-AT-------T----G----------T-A-----T--ATAG--T-AC--CGATC-TAT-AAAT-AAA-A-TTAC-TT
gi|18 : t-A--GT-CGGTTAAA-AA-GCT-C-TTA--C----A-GAGT-TTG-TG-TTGTC-T----GTTT-ATA------T----G----------TAA-----T--ATAG--T-ACCTCGA-C-TTT-AAAT-AAACAATTAC-
gi|19 : ATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----G----------T-ATAATCT--ACAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-
gi|2 : tcTTTTCTC--TC-TTTT-TTAGTCTTTACTAGT-TAC-A-TGA-TGTATA-T--CAGT--TTA-T-GTTTTT---G-T-C-T-AATTT-AATACATGTTTTAGT-A--G----TATG-TCTA-ATGA--GT-CGGATAAA-AAAGCT-CAT-A--C----ACGAGC-TTG-TG-TTTTTCT----G-TTTATA------TTGTAG----------T-AC----T--ATGG--T-AC--CGA-C-TTT-AAATAAAA-ATTTAC-TTACT
gi|20 : ttttttattttatttttagtaaacctttctcgaactttcttatttactgtaatgtcttgtcaagtcttaaacagagtaaatttcttatttttgactcatattcataatttctaaacttttttactagactattattcaatttcctttaccattaccaattttatgtaaactgtctgggtctttagagatcgtaatcacatcagctaattaaatccgattagagtttttggttaaatttgtgggctgattttaatatttacttcactatctgttttattgttgtgctgtatatctgtatatattctatgcataaattgttttact--GT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTTTT-T----G-TT-AAA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-gt
gi|21 : GATCAA-AA-GCT-C-T-A--C----A-GAGC-TTA-TG-TT-AC-T----G-TT-TTA------A----A----------T-A-----T-----------C--CGA-C-TTC-AAAT-AAA-ATTTTC-
gi|22 : ATCAA-AT-ACT-C-T-A--C----A-GAGC-TTA-TG-TT-AC-T----G-TT-GTA------T----A----------T-A-----T-----------C--CGA-C-TAT-AAAT-AAA-
gi|24 : ----A-GAGC-TTG-TG-TTGAC-T----G-TT-ATA------T----G----------T-A-----T--GTAG--T-AC--CAA-C-TTT-AAAT-Att
gi|27 : AA-AA-GCT-G-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT--TA------T----G----------T-A-----C--AT
gi|28 : -TGTG-AT-A--GT-CGGATAAA-AA-GCT-T-T-A--C----A-GACC-TTG-TG-TTtg
gi|3 : TTTTGTC--TC-T--T-TTG--TTTT----GTGTA--A-TG--TATATA-TTGCATG---TA-TCGTTT-----G-T-T-TTAATTT-AATAATTATCTT-------A----TTT--TGTG-AT-A--AT-CG-ATAAA-AA-GCT-C-T-A--C----ACGAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----A----------T-A-----T---TAA--T-AC--AGA-C-TTTTAAAT-AAA-ATTTACTTTACT
gi|4 : ctttttcttattttgcatcgttgatgggttttttttttctttcttgagtatgtttttagtaaacctttctcagagctttttatttatgtaatgttgtcagtgtcttgcagagaaatttttattttttgactatatgtgttcttaacttttttatctaggctattattaatttcttacacatgcaatttttatgttcttttgtttaaattttgttggctgcttatatgacttcacttctgtttgtgttgtttttattcttcctttatatctatgtgctttttcttattgatatatatctttgcatgaattgttacTTTTGTCGCTCATCTTGTTGGTTTTT----ATGTGC-AGTG--TATATAGT-GCATG--CTAGT-GTTTTT---G-TAC-TTAATTT-AATAC--GTTTT--GAA--A----GGTA-TGTG-AC-A--------AAGGA-AA-GCT-C-T-AGGC----ACGAGCGTTG--G-TGGTT-TTTTGG-TT-ATA------T----G----------T-A-----TGAGTAG--TGAC--CGA---TTT-AAAT--AA-ATTTA
gi|5 : gtattgatttaattctgttttatgttgtgcttatatctgtagatatattctttggcataatgtttaggcTTTTGTT--TC-TCTT-TTG-CTTTT----ATGTAC-A-TG--TATATA-T-GCATG--CTAAT-GTTTTTTTTG-T-CCTTAATTC-AATACATGTTTT--A-A--A----AGTA-TGCG-AT-ATAGT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTA-TG-TTTTT-T----G-TT-ATG------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACTaactacgttactt
gi|6 : ttgtagtattgtatagaattccacaatcatgtaatgttttagTTTTGTC--TC-TCTT-TTGGTTTT-----GTGTAC-A-TG--TATATA-T-GCATG--TTA-T-GTTTT----G-T-C-TTAATTT-AATACATATCTT--T-A--A----TTTA-TGTG-AT-A--TT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----G----------T-A-----T--ATAA--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACTt
gi|7 : gaTGTACCA-TG--TATATA-T-GCATG--CTA-C-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--A-A--A----AGTA-TGTG-AT-ATAGT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTTTT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TT
blockSeqs : GC A C G G TACTA C G A G T T G C TTTT . A C . AGTAGTA G T G TA T G A T A T GG T C G T A TA C TTTG T C G TGTA GCCCTCACTT A TAATC GA GT G CT T T T A C T
blockSeqs : . . C . G T . . . . . C A . T . . . . TATCAC . . . TA . . . . . . . . C . G . TT . TGG . A . . A . C . T . . . . . . . .
blockSeqs : . . C . G T . . . . . C . . T . . . . GAAAGG . . . T . . . . . . . . C . . . GA . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . T . . . . . T . . T . . . . TAAAG . . . T . . . . . . . . . . . . GA . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . C . . T . . . . TGATT . . . . . . . . . . . . . . . . GA . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . TTATT . . . . . . . . . . . . . . . . GT . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . AAAAG . . . . . . . . . . . . . . . . GA . . . . . . . . . . . . . . . . . . .
blockSeqs : TAATT . . . . . . . . . . . . . . . . TT . . . . . . . . . . . . . . . . . . .
blockSeqs : AAAAG . . . . . . . . . . . . . . . . TT . . . . . . . . . . . . . . . . . . .
blockSeqs : ATT . . . . . . . . . . . . . . . . GA . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . GA . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . GA . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . GT . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . TT . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . GA . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . TT . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : T**** ** C** T*** TAANN********* **** ******
originalCons : NNTTTTGTC--TC-TCTT-TTGGTTTTT----GTGTAC-A-TG--TATATA-T-GCATG--CTA-T-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--T-A--A----TNTA-TGTG-AT-A--GT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGNT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACT
finalCons : NNTTTTGTC--TC-TCTT-TTGGTTTTT----GTGTAC-A-TG--TATATA-T-GCATGC--TA-T-GTTTTT---G-T-C-TTAATTT-AATACATGTTTTTAANN---------TA-TGTG-AT-A--GT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGNT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCTTATATTTCAATTTTATTTCAGCGTTTTTCATGAATAGTTTCACTGTTACATTAAATTTCCTTCTACTATTGCAATTTTTATGTTGCTTTTGTTGAAATTTTGTTACTTTGTCTCTCTTGTTGGTTTTG
Unaligned ( gi|9 ): ATGCAAATTTTTATGTTGCTTTTGTTAAAAATTTTGTTGGCTGCTTTTAAAAGACTTTCACTTCTGTTTTGTGTTGTTTTTTATTCTTCCATTAAATCTTGTGCTTTATCTTTATCTGTAT
Unaligned ( gi|14 ): CTTGCAGAGAAATTTTTATTTTTGACTTATGTTCATAAATTCTAAACTTTTTTTTTATCTAGACTATTTTAAAATTTCCTTTACTATGCAAATTTTTATGC
Unaligned ( gi|17 ): ATGCTCAAGACACATCTTATGCATCATGCATGCTTATTCATACTGCTTTATGTTGTAACCTGTATAAAGTGTATATACACGTT
Unaligned ( gi|23 ): TTATTCTGAGAATCCTTTCAAAAGTTGCAAAACCATAATAAAGTGTGAAAA
Unaligned ( gi|25 ): TATTTTTATTATTTGTTATTTTGTAAATATGTATGTAAATATGTTA
Unaligned ( gi|26 ): TTTTATTTTAATTTATTCATAAAATGATAAATGCAGTGTTGGAT
Alignments
lowQualScore : 11 22222 11 1 1111 1111111111111 11 1111111111
lowQualScore : 11 8 3 6 6 11111 5 5 33 5 5 999 1 5 3333 5 5 5 5 5555555555555 3 2 2 11 2 2 2 2 2 2 22 6666 5 1 3 1 66 2 7777 2 6 777777 4444 0000000000 2 77777 22 55 2 22 2 2 2 2 2 2
lowQualScore : .. . . . . ..... . . .. . . ... . . .... . . . . ............. . . . .. . . . . . . .. .... . . . . .. . .... . . ...... .... .......... . ..... .. .. . .. . . . . . .
lowQualScore : 00 0 2 7 7 55555 7 7 66 7 7 666 4 7 9999 0 0 0 0 2222222222222 1 9 7 99 5 0 0 0 0 0 88 0000 7 9 8 9 00 0 8888 0 0 888888 2222 8888888888 0 00000 88 00 1 99 1 1 1 1 2 7
consensus : NNTTTTGTC--TC-TCTT-TTGGTTTTT----GTGTAC-A-TG--TATATA-T-GCATG--CTA-T-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--T-A-ANN----TA-TGTG-AT-A--GT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGNT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACT
Reference ( family-617 ) : NNTTTTGTC--TC-TCTT-TTGGTTTTT----GTGTAC-A-TG--TATATA-T-GCATG--CTA-T-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--T-A-ANN----TA-TGTG-AT-A--GT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGNT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACT
gi|1 : TT-TTGGTCTT-----GTGTAC-A-TGCTTATATA-T-GCATGTTCTA-T-CTCTCTC--GCT-C-TCAATTTTAATACATGTTTT--T-A-AAAAATTTA-TGTG-AT-A--AT-CGGATAAA-AA-GCT-C-T-G--CCGGCA-GAGC-TTG-TG-TTGTT-T----G-TT-ATACATGTAT----G----------T-A-----T--ATAA--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-
gi|10 : cttttttcgtctaattctttcgttgactgtgttttgtgtatagagtttctttgcttgcgcatggttttctttagtagaactcttattctcagtcttatgtttatttctttaatgtaatgtactatcgcaacgtgctcttgcgagtaattttttatcttttagacttatatttacgattaattttctacttttctctctatgactatctaatcaattctttacaatgcaaatttttactcgctgcttctctcgctgtaaatttattttttgttttctgctggtgtgtgtggtgcacgttctagtttcatactattgtgttttatacttagtctcgtacttagattattcttggccattaaatgtctctcacttgttgtcgtgtgctTTTT---G-T-C-TTAATTT-AATACATG-TTT--T-A-AAG----TA-TGTG-AT-AT-AT-CAGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTGTTG-TT-TT-T----T-TT-ATA------T----G----------T-A-----T--ATAAT-T-AC--CGA-C-TTT-AATT-AAA-ATTTAC-TTATT
gi|11 : gTACATGTTTA--T-ATCAC----TA-T----AT-A--GT-TGGTTAAA-GA-GC--C-A-A--TT---A-GAGC-TCA-TA-TCTAT-C----G-TTCAT-------T----GA---------C-A-----A--AT-G--T-GC--TGG-C-TCT-AAAT-GAA-ATTTAC-TTACa
gi|12 : -AT-AT-GT-CGGATAAA-AA-GCTTC-T-A--C----A-GAGC-TTG-TG-TTTTT-TTGG-G-TT-ATA------T----GGCCCTCACTTT-A--------ATAAGTT-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTAatact
gi|13 : aaaTTT--T-G-ATT----TAGTGTG-AT-A--GTTCGGATAAAGAA-GCT-C-T-A--C----A-G--C-TTG-TG-TTGAT-T----G-TTAATAG-----T----G----------T-------T--AAAA--C-AC--CGA-CTTTT-AAAT-AAA-ATTTactt
gi|15 : cTCTT--T-T-ATT----TA--GTGTAT-A--GT-CGGATAAA-A---CT-C-T-A--C----A-GC-C-TTG-TG-T-GAT-T----G-TA-ATA------T----G----------T-A-----T--AAAA--C-AC--CGA-C--TT-AAAT-AAA-ATTTAC-CGACTcacctgaact
gi|16 : ----TA-TTTG-AT-A--GT-CGGA-AAA-AA-GCT-C-C-A--C----A-G-GC-TTGGTGATTGAT-T----G-TT-AT-------T----G----------T-A-----T--ATAG--T-AC--CGATC-TAT-AAAT-AAA-A-TTAC-TT
gi|18 : ttt-A--GT-CGGTTAAA-AA-GCT-C-TTA--C----A-GAGT-TTG-TG-TTGTC-T----GTTT-ATA------T----G----------TAA-----T--ATAG--T-ACCTCGA-C-TTT-AAAT-AAACAATTAC-
gi|19 : ATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----G----------T-ATAATCT--ACAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-
gi|2 : tcTTTTCTC--TC-TTTT-TTAGTCTTTACTAGT-TAC-A-TGA-TGTATA-T--CAGT--TTA-T-GTTTTT---G-T-C-T-AATTT-AATACATGTTTTAGT-A-GTA----TG-TCTA-ATGA--GT-CGGATAAA-AAAGCT-CAT-A--C----ACGAGC-TTG-TG-TTTTTCT----G-TTTATA------TTGTAG----------T-AC----T--ATGG--T-AC--CGA-C-TTT-AAATAAAA-ATTTAC-TTACT
gi|20 : ttttttattttatttttagtaaacctttctcgaactttcttatttactgtaatgtcttgtcaagtcttaaacagagtaaatttcttatttttgactcatattcataatttctaaacttttttactagactattattcaatttcctttaccattaccaattttatgtaaactgtctgggtctttagagatcgtaatcacatcagctaattaaatccgattagagtttttggttaaatttgtgggctgattttaatatttacttcactatctgttttattgttgtgctgtatatctgtatatattctatgcataaattgttttact--GT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTTTT-T----G-TT-AAA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-gt
gi|21 : GATCAA-AA-GCT-C-T-A--C----A-GAGC-TTA-TG-TT-AC-T----G-TT-TTA------A----A----------T-A-----T-----------C--CGA-C-TTC-AAAT-AAA-ATTTTC-
gi|22 : ATCAA-AT-ACT-C-T-A--C----A-GAGC-TTA-TG-TT-AC-T----G-TT-GTA------T----A----------T-A-----T-----------C--CGA-C-TAT-AAAT-AAA-
gi|24 : ----A-GAGC-TTG-TG-TTGAC-T----G-TT-ATA------T----G----------T-A-----T--GTAG--T-AC--CAA-C-TTT-AAAT-Att
gi|27 : AA-AA-GCT-G-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT--TA------T----G----------T-A-----C--AT
gi|28 : -TGTG-AT-A--GT-CGGATAAA-AA-GCT-T-T-A--C----A-GACC-TTG-TG-TTtg
gi|3 : TTTTGTC--TC-T--T-TTG--TTTT----GTGTA--A-TG--TATATA-TTGCATG---TA-TCGTTT-----G-T-T-TTAATTT-AATAATTATCTT------ATT----T--TGTG-AT-A--AT-CG-ATAAA-AA-GCT-C-T-A--C----ACGAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----A----------T-A-----T---TAA--T-AC--AGA-C-TTTTAAAT-AAA-ATTTACTTTACT
gi|4 : ctttttcttattttgcatcgttgatgggttttttttttctttcttgagtatgtttttagtaaacctttctcagagctttttatttatgtaatgttgtcagtgtcttgcagagaaatttttattttttgactatatgtgttcttaacttttttatctaggctattattaatttcttacacatgcaatttttatgttcttttgtttaaattttgttggctgcttatatgacttcacttctgtttgtgttgtttttattcttcctttatatctatgtgctttttcttattgatatatatctttgcatgaattgttacTTTTGTCGCTCATCTTGTTGGTTTTT----ATGTGC-AGTG--TATATAGT-GCATG--CTAGT-GTTTTT---G-TAC-TTAATTT-AATAC--GTTTT--GAA-AGG----TA-TGTG-AC-A--------AAGGA-AA-GCT-C-T-AGGC----ACGAGCGTTG--G-TGGTT-TTTTGG-TT-ATA------T----G----------T-A-----TGAGTAG--TGAC--CGA---TTT-AAAT--AA-ATTTA
gi|5 : gtattgatttaattctgttttatgttgtgcttatatctgtagatatattctttggcataatgtttaggcTTTTGTT--TC-TCTT-TTG-CTTTT----ATGTAC-A-TG--TATATA-T-GCATG--CTAAT-GTTTTTTTTG-T-CCTTAATTC-AATACATGTTTT--A-A-AAG----TA-TGCG-AT-ATAGT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTA-TG-TTTTT-T----G-TT-ATG------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACTaactacgttactt
gi|6 : ttgtagtattgtatagaattccacaatcatgtaatgttttagTTTTGTC--TC-TCTT-TTGGTTTT-----GTGTAC-A-TG--TATATA-T-GCATG--TTA-T-GTTTT----G-T-C-TTAATTT-AATACATATCTT--T-A-ATT----TA-TGTG-AT-A--TT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTGAT-T----G-TT-ATA------T----G----------T-A-----T--ATAA--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TTACTt
gi|7 : gaTGTACCA-TG--TATATA-T-GCATG--CTA-C-GTTTTT---G-T-C-TTAATTT-AATACATGTTTT--A-A-AAG----TA-TGTG-AT-ATAGT-CGGATAAA-AA-GCT-C-T-A--C----A-GAGC-TTG-TG-TTTTT-T----G-TT-ATA------T----G----------T-A-----T--ATAG--T-AC--CGA-C-TTT-AAAT-AAA-ATTTAC-TT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCTTATATTTCAATTTTATTTCAGCGTTTTTCATGAATAGTTTCACTGTTACATTAAATTTCCTTCTACTATTGCAATTTTTATGTTGCTTTTGTTGAAATTTTGTTACTTTGTCTCTCTTGTTGGTTTTG
Unaligned ( gi|9 ): ATGCAAATTTTTATGTTGCTTTTGTTAAAAATTTTGTTGGCTGCTTTTAAAAGACTTTCACTTCTGTTTTGTGTTGTTTTTTATTCTTCCATTAAATCTTGTGCTTTATCTTTATCTGTAT
Unaligned ( gi|14 ): CTTGCAGAGAAATTTTTATTTTTGACTTATGTTCATAAATTCTAAACTTTTTTTTTATCTAGACTATTTTAAAATTTCCTTTACTATGCAAATTTTTATGC
Unaligned ( gi|17 ): ATGCTCAAGACACATCTTATGCATCATGCATGCTTATTCATACTGCTTTATGTTGTAACCTGTATAAAGTGTATATACACGTT
Unaligned ( gi|23 ): TTATTCTGAGAATCCTTTCAAAAGTTGCAAAACCATAATAAAGTGTGAAAA
Unaligned ( gi|25 ): TATTTTTATTATTTGTTATTTTGTAAATATGTATGTAAATATGTTA
Unaligned ( gi|26 ): TTTTATTTTAATTTATTCATAAAATGATAAATGCAGTGTTGGAT