lowQualScore : 111111
lowQualScore : 55 1 111111 77777 1 99999999999999 2 1 1 444444444444 2 2 8888888888888 111 4444444444444444 1111 333333 333333333333333333 3 222 1111 222222222 77777777777 11 11 555555555555 1111 1 222 3 111 222222 333 1111 33333333333333333333 11111111 1111 1 1111111 333333333333 111111111111111 1 11111 666666666666666666666666666 1111 111 111 22222222222222 4 11 111111 22 4444444 222222 11 11 11 11 666666666666666666 333333 11 1 1 33 2 444444 1 1 222222 44 1 111 4444444 11 1111 1 1 3
lowQualScore : 55 5 6 555555 77777 7 4 33333333333333 0 3 5 2 3 6 333333333333 6 4 6 6 7 7 9999999999999 444 3333333333333333 0 0 0 8888 222222 33 0 5 3 0 222222222222222222 2 555 5 8 7777 8 99 6 111111111 00000000000 00 11 333333333333 7777 8 3 8 6 222 6 2 8 8 444 333333 111 4444 55555555555555555555 1 88888888 5 5 6 6 1 6 4444 5 1 6 3 6666666 6 6 444444444444 77 5 5 0 5 0 333333333333333 1 1 999 1 44444 000000000000000000000000000 1111 111 111 44444444444444 3 0 11 6 7 6 3 99 6 999999 3 99 6666666 88 333333 22 33 33 22 2 222222222222222222 3 999999 44 555 5 5 88 0 222222 5 3 777777 11 0 5 000 5 1111111 5 99 77 6666 5 0 66 3 66 0 66
lowQualScore : .. . . ...... ..... . . .............. . . . . . . ............ . . . . . . ............. ... ................ . . . .... ...... .. . . . . .................. . ... . . .... . .. . ......... ........... .. .. ............ .... . . . . ... . . . . ... ...... ... .... .................... . ........ . . . . . . .... . . . . ....... . . ............ .. . . . . . ............... . . ... . ..... ........................... .... ... ... .............. . . .. . . . . .. . ...... . .. ....... .. ...... .. .. .. .. . .................. . ...... .. ... . . .. . ...... . . ...... .. . . ... . ....... . .. .. .... . . .. . .. . ..
lowQualScore : 00 0 0 000000 00000 0 0 55555555555555 0 0 0 5 3 0 777777777777 7 7 7 7 3 3 3333333333333 555 0000000000000000 2 2 2 5555 555555 88 2 6 2 8 444444444444444444 0 000 6 0 0000 0 22 7 888888888 55555555555 33 00 222222222222 0000 0 2 0 0 000 0 0 0 0 000 000000 000 2222 22222222222222222222 0 44444444 7 7 7 7 7 7 2222 7 0 7 3 8888888 7 7 777777777777 99 7 7 5 0 2 444444444444444 4 4 333 7 33333 333333333333333333333333333 2222 777 333 22222222222222 2 0 00 7 3 7 0 88 7 222222 2 00 7777777 88 000000 55 88 88 55 5 555555555555555555 2 222222 00 555 0 5 00 0 000000 0 3 000000 77 0 7 000 7 1111111 7 33 99 6666 0 0 99 4 99 6 99
consensus : ATTATATA--GATATTCTAAAGCAAATATTTACATGTATGTACTGGTATAGACTAT--CTTTCATCTTCTAACCTNCTAAGGGCAGCTTTCAAATGAG-GCAAGTCTAACACCACTAANCAGTGACTGGTATTNCAGTATTTTATTCTA-CAGTGAAAAA---CTG------CATATTGACTCTGNCCCTTTGCAAAACACTTAGTGAAAACAAATT-CAAA-TTAAATTGTATATAAAAAA--GCAA-CTTCG-TAA-TAATTTCTCAAACTTT--T-GGGAAAATGTTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATC--G-AGTAAT-TCTC-GCAAAATTC--AGAATTAGTAATCA-CTG-TCTAC--GGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATATAATAACTATGGTAAAA-ATG-AAATTCTTCCTA---GAT------GTGAAAGAA-TTTG----TCAATA---C---------CG-----TACCTC------AAGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGTC-A-----A-ATGAA-A-CCCGG----AGTTTAC--CGTT---CAA-TTATGCCAA-TAT------TTAATTGTAAATTTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGCACAACAT-A------AATT-NTT--ATGCAT--GTTCTA-CATGCGC----AC---ATA------TATACTATTGTATANTGT--TTAT-ATANGNTGGTATTTTTGATGCGCTAAACTCTCTGTTC-GCATGTCATGCAACTCAGT-GA-T--A-ATTTCTC-TTT-GTTATCC-TTTGTTTATG---TGATT-TTGGA--A-AC-TATGT-ATCAT-TG--ATGCTCC--T-ATGTGGGCCC-AA--ATTGGTTGAATAAA--TATTTCT--ATTCTAT
Reference ( gi|1 ) : ATTATATATTGATATGCTAAAGCAAATACTTA------TGTACTGGTATAGACTAGAACATTCAACTTCTAACCTACTAAGGGCAGCTTTC-AATGAGTGCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGGAAAA---CTA------CATATTGA-TCTGTCC-TTTGCAAAACACTTAGTGAAAACAAATTACAAAGTTAAAT-GTATATAAAAAA--GCAATCTTCG-TAA-TAATTTCTCAAACTTT--T-GGGAATAT-TTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAG-ACAAAAGATCCAT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATC--GTAG--ATCTCTC-GCAAAATTC--AGAATTAGTAATCACCTG-TCT-T--GGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATATAATAGCCATGAT-AAA-ATG-AAATTCTTCCTA---GAT------GTGAAAG-A-TTTG----TCAATA---C---------TG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT--A-----A-ATGAA-A-CCCA-----AGTTTAC--CATT---CAA-TTATGCTAA-TAC------TTAATTGTAAATCTCAACTA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTAT-CTTAGAC-TA---AACAT-A------AATT-CTT--ATGCAT--GTTCTA-CATGCGC----AC---AT-------TATACTATTGTATAATGTA-TTAC-ATATATTGATATTTTTGATGTGCT-AACTCTC-GTTCAGCATGTCATGCAACTCCGT-GA-T--A-ATTTCT-GTTT-GTTATCC-TTTGTTTATG---TGATT-TTGGA--A-A--TATGT-ATCA--TG--ATGCTCC--C-ATGTGGG-CC-AA--ATTGGTTGAATAAA--TATTGCT--ATTCTAT
gi|3 : ATTATATA--GATATTCTAAAGCAAATATTTACATGTATGTACTGGTATAGACTAT--CTTTCATCTTCTAACTTTTTAAGGGCAGC--------------AAGTCTAACACCATT-ACTAGTGACTGGTATTGTAGTATTTTATTCTA-CAATGAAAAA---CTAACGTTACATATTGA-TTTGTCCCTTTGCAAAACACTGAGTGAAAACAAATT-------TAAATTGTATTTAAAAAG--GCAA-----------------------------T-GGGAAAATATCCGTCCCTGTTATATGCAGGGTTTTGGAA---T------GTAT------CTACTTTCAGCACAAAAGATCATT-AAATTTTGCAAACTA-CCTGAATTT----A-AAA--AG-CC-------G-GGATAATCAGGCA---AT-TTTC-ACTAAATTC--AGAATTAGTAATCA-TTG-TCTAC--AGG----TAG-ATACAGACAG-ATATGAAAGA-AAAAT-TAATAACTATGGTAAAA-ATG-AAATTCTTCCCAGCTGGT------GTGAGAG-ACTTTG----TCAATA---CTGTACGTCATG-----TACCTC------AAGTTCAAC-AGA-A-G-ATGAATT-ACATGCA-TTCTTTAATAGAATGTCCA-CTAT-AC--A----ATAATATTTAGAGGA-GAGTTTTTGA-ATAA---GA---T-T-TTAAAACCTTTCCAAATCCTAACAATA
gi|6 : cAACCTACTAAGAGCAGCTTTCAAATGAG-GCAAGTCTAACACCACTAAACA-TGACTGGTATTCCAGTATTTTATTCTACCAGTGAAAAAAACCTG------CATATTGATTCTGACCTTTTGCAAAA-AC-TAGTGAAAACAAATT-CAAA-T----T-GTATATTAAAAA--GCAA-CTTCG-TAATTGTTTTCTCAAACTTT--TGGGGAAAATGTTCGTACCTGC-ATATGCAGG---TTGGAAAATTAAGAAAGTAC------ATACTTTCAGCACAAAAGATCCCTGCAATTTCGAAAAATATCCTGAATTTTTAAA-AAA--AGCCA-------A-GGACAATC--G-AGTAATCTCGCAACAAAATTCAAAGAATTAGTAATCA-CTGCTCTAC--GGGCGTTTA--AAACA-TCAGTATATTAAAAATAAAAa
gi|2 : TTTTATTCTA-CAGTGAAAAA---CTG------CATATTGACTCGACCC-GTTGCAAAACACTTAGTGAAAATAA-TT-CAAA--T---T-GTATATAAAAAA--GCAA-CTTCGTTAA-TAATTTCTCAAACTTTGGC-GAGAATG--TTCGCACTTGCTATAGGCAA-GTTTTGGAAAATT----AAGTAC------ATACTTTCAATACAAAAGATCCTT-CAA-TTCGAACAATA-CCTGAATTT----A-AAA--AT-CA-------AGGGACAATC--GAGA--ATGTCTC--CAAAATTC--AGAATTAGTAATCA-CTG-TCTAC--GGG----TAGAAAACAGGCAG-ATATGAAAGAGAAAATA-AATAGCCATGGTAAAA-ATGAAAATTCTTCCTA---GAT------GTGAAAGAA-TTTG----TCAATA---C---------TG-----TACCTC------A-GTTCAAC-AGA-AGG-ATG-ATT-A----CATTTTTTTACTTGAATGTCCA-CTATAAC--A----ACAAT-TTTAGAGGAGGAGTTTT----A-AAC-TGATTTT-T-TTAAAACCTATCCAAA-CCTAGCACTACTT-AC--ATGC-TGATCTG-TTA--ACATGGATT-----AGGTCAA-----A-AT-AA-A-CCCAG----AGTTTAC--CATT---CAATTTATGACAATTAC------TTAATT-TAGAATTCAA-TA--CAAGAAAACAAACA-ACTT-GTGGAATATAAAGTATTGTC------TAG-TAT-ATTAGA---A---AACA--A------AATTCCTT--ATGCAT--GTTCTACCATGCGC----AC---AT-------TATCTTATTGTAACATGTATTTACAATATAGT-ATA-TTTTGAT-CGCT-AACTCTCTGTTC-GCATGTCATGCAACTCAGTCGATT--A-ATTTCTCGTTTCGTTATCCTTTTGTTTATAAATTGATT-TTGGACCA-C--TATGT-ATCA--TGACATGCGCC--T-ATGTGGG-CC-AA--ATTGGTTGAATAAACTCATTTCT--ATTCTAT
gi|4 : caggAAATTTAAATTGTACATAAAACCCTGCA--CTACG-TAA-CAACTTTTTAAATTTT--T-GGGAAAAT-------------ATATGCAAAGTTGTGGAAAAT------------------TACTTT------------TCC-------TTTGAAAAATA-CCCGAATTT----ATAAATGAC-CATAAATCCA-AGATAATCGGGTA---AT-TCTC-GCTGAATTC--AGAATTAGCAATCA-TTG--CT-TACGGG----TAG-AAACAAGCAG-ATATGAAAGA-AAAA-ATAATAACTATGGTAAAA-ATC-GAATTCTTCCAA---GGT------GTGAGAG-AGTCTGTCGATCAATA---C---------TG-----TATCTCAAGTGAAAGTTCAAC-AGA-tct
gi|7 : CTATATGCAAGGTTTTGGAAAATT----AAGTACCTGTACATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATC--G-AGTAAT-TCTC-GCAAAATTC--AGAATTAGTAATCA-CTG-TCTAC--GGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATA-AATAGCCATGGTAAAA-ATG-AAATTCTTCCTA---GAT------GTGAAAGAA-TTTG----TCAACA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--T-A-AACATGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGAAT-----ATcgttaattcggggggagagttttaaattctttccaaaccatgcaatgctgatagatctgtttattatatggatatgtcatatgaacatttcgagtttactgttctactgtattattgtaactttcaatatttaagaaaattacaacatgtggaatatatttagactacacaacatatagactagttactatgcatgcactagtggttttaacgatatactagtatagtgaa
gi|19 : A--AG-CA-------A-GGACAATC--G-AGTAAT-TCTC-GCAAA
gi|11 : AATTACTACGGT-GAACGTG-AAATTCTTCCTA---GATACACGGGTGAAAGAA-TCCC----TCAACATAGC---------CGGCCCCCACCTA------AAGTTCAAA-GGA-G-G-ATGGATT-A----TA-TTT
gi|17 : TTG----TCAATA---C---------TC-----TA--------------TCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCaattttttcta
gi|5 : TC------AGGTTCAACTAGATA-GTATGAATTTA----CA-TTTTTTACTCGAATGTCCAGCTATCACCAA----ACAAT-TTTAAAGGA-GAGTTTT--TTA-AAC-ATA--TT-T-TTAAAACCTATCCAAA-C-TA-CACTACTTAACCAATGCCTGATCTG-TTA---CATGGATTTTACCATGT--AGTGCAA-ATGAA-AACCCGG----AGTATG-----TA---CAA---ACG-TAA-T------------TTGTAAATCTCAA-TA--CAAGAAAAC-AACATACTTTGTTGA-TAT-AAGT-ATGTC------TAGTTATATTTAGACATGC--AACATTA------AATT-CTTTTATGCATCTGTTCTA-CATGCGC----ATTATATA------TATACTATTGTATATT----TTAT-ATAAGTTGGTATTTTTGATG-GCTAAACTCTCTGTTC-GCATGTCATGCAACTCAGT-AA-T--A-TTTTCTCTTTT-GTTATCC-TTTGTTTATG---TGATT-TGGGA--ACACTTATGCGATCAT-TG--ATG--CC--T-ATGT-GG-CC-CA--ATTAGTTGAATAAA--TATTTCT--ATTCTAT
gi|10 : t-TTCTTT-CTAGAATGTTCA-CTGT-AC--ATATAGCAAT-TGTAGCGGG-AAGTT----A-A-AAC-T-A--TTATGTTAAAACCCATCCAAA--ATAGTATT--CTAA--AATGC-TGA-CTATTTA--ACA-GGATG-----ATTC--G-----A-ATGAAGA-TTTA-----TTTTTTCGATATTTTATAA-TCATG-TAA-GAT------TTAGTTGcc
gi|4 : cGAAAGTTCA-ACAG-AC--G----TTAAT-TCGGGGGGA-GAGTTTT--A-A-------A--TT-C-TT--------TCCAAA-CCATGCAATGC-TGAT-A------GATCTGTTTATTATATGGA-T-----ATGT--C-----ATATGAACATTTCG-----AGTTTAC--TGTT---C------TACT-G-TAT------T--ATTGTAACTTTCAA-TATTTAAGAAAAT-TACA-ACAT-GTGGAATAT-A-----------------------TTTAGAC-TACACAACAT-ATAGACTAGTT-ACT--ATGCAT--GCACTA--GTG-GTTTTAAC---GA-------TATACTA--GTATAGTG
gi|9 : aaatttaaattgtacataaaaccctgcactacgtaacaactttttaaatttttgggaaaatatatgcaaagttgtggaaaattacttttcctttgaaaaatacccgaatttataaatgaccataaatccaagataatcgggtaattctcgctgaattcagaattagcaatcattgcttacgggtagaaacaagcagatatgaaagaaaaaataataactatggtaaaaatcgaattcttccaaggtgtgagagagtctgtcgatcaatactgtatctcaagt--TT-T-TTAAAACCTTTCCAAA-GCTAGCATTACTTAGC-AATAC-GGATATG-TTA--ACATGGATT-----AGGTC-A-----A-AAGAA-----CATTATGAGGTTAC--CGTT---CAA-TTATTCCAA-TAT------TTAATTGTAAATTTCAA-TA--CAAGAAAAC-ACTATACTT-GTTGAATAT--AGTCATGTTTAAATGTAGTTATATTTAGAT-TGC--AACAT-A------Aaa
gi|8 : ttaaacaagattAAAACCTATCCAAA-CCTAGCACT--------------------G-T------ATGGATT-----ATGTC-A-----A-ATGAA-AACCCGG----AGTTTAC--CGTT---CAA-TTATGCCAA-TACATGTACTTAATTGTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGTACAACAT-A------AATT-ATT--ATGCAT--GTTCTA-CATGCGC----AT---ATATATACATGTACTATTGTATA---TT-TTAT-ATAttatt
gi|6 : AGAAT-AAAATACT--G--GAATAC-CAGTCATGTT------TAGTGGT-GTTAGAC-Tat
gi|12 : aacctactaagagcagctttcaaatgaggcaACTCAGT-GA-TTCATATTTCT---CT-GTTATCC-TTT-TTTATG---TGATT-TTGAC--A-C--CATAT-ATCATTTA--GTGCT-C--C-ATGTGGG-CC-CA--AT--GTT-AATAAA--TATT-CTTAATTCTAaccagtgaaaaaaacctgcatattgattctgaccttttgcaaaaactagtgaaaacaaattcaaattgtatattaaaaagcaacttcgtaattgttttctcaaacttttggggaaaatgttcgtacctgcatatgcaggttggaaaattaagaaagtacatactttcagcacaaaagatccctgcaatttcgaaaaatatcctgaatttttaaaaaaagccaaggacaatcgagtaatctcgcaacaaaattcaaagaattagtaatcactgctctacgggcgtttaaaacatcagtatattaaaaataaaa
gi|13 : TTT-GTTATCC-TTTGTTTATG---TGATT-TTGGA--C-A--C-TGT-ATCA--TG--ATGCTCCTAT-ATATGGGCCC-AA--ATTGGTTGAATAAA--TATT-CT--ATTCTATc
gi|14 : TATCC-TTTGTTTATG---TGATG-TTGAA--C-AC-TATGT-ATCA--TG--ATGCTCC--T-CTGTGGG-CCCAA--ATTAGTTGAATGAA--TATTTCT--ATTCTATa
gi|16 : cTATCA-TTTGTGTATG---TGATA-TTGGA--C-AC-TATGT-ATCA--TG--ATGCTCC--T-ATGTGGGCCC-AA--ATTCGTTGAATAAA--TATT-CT--ATTATATtct
gi|15 : TATCT-TTTGTTTATG---TCATTATTGAAC-A-C--TATGT-ATAAT-TG--ATGCTCC--TAATGTGGGCCC-AAATATTTGTTGAATAAA---ATT-CT--ATTCTAttt
gi|18 : -ATGTGGG-CCCAA--ATTGGTTGAATAAA--TATT-TT--ATTCTAT
Alignments
lowQualScore : 22 222222 333 222222222222 22 1 111 222222 1 3333333333 11 1 111111 111111 1111 1111111 1 111 1111 1 111 111 111111 1111 33333333333333333333 1111111 1111 1 1111111 222222222222 1 11111 1111 111 2222222 111111 2222222 22222222 11 22222222222222222222 11111 1 11 2 1 1 111111 11 111 11 1111
lowQualScore : 77 3 999999 000 4 4 1 555555555555 11 6 11 0 777 888888 0 55 1 6 2 3 3 2222222222 5 11 88 1 8 8 1 8 3 0 3 6 666666 999999 5 6 3 6 4444 6 77 5 8888888 5 5 7 1 000 99 6 6 4444 6 1 6 3 222 1 6 111 999999 5 2222 22222222222222222222 4444444 5 5 5 5 0 5 2222 5 5 1 3333333 5 5 000000000000 66 5 5 4 3 2 2 6666 5 0 0 777 0 22222 2222 555 9 88 66 6 1111111 3 6 99 6 7 6 99 6 999999 3 1 5555555 55555555 77 99 11 8 88888888888888888888 0 33333 555 3 88 3 7 3 0 555555 11 0 8 5 888 5 0 999 5 5 22 66 5 0 0000 1 66 1 66 7 4
lowQualScore : .. . ...... ... . . . ............ .. . .. . ... ...... . .. . . . . . .......... . .. .. . . . . . . . . . ...... ...... . . . . .... . .. . ....... . . . . ... .. . . .... . . . . ... . . ... ...... . .... .................... ....... . . . . . . .... . . . ....... . . ............ .. . . . . . . .... . . . ... . ..... .... ... . .. .. . ....... . . .. . . . .. . ...... . . ....... ........ .. .. .. . .................... . ..... ... . .. . . . . ...... .. . . . ... . . ... . . .. .. . . .... . .. . .. . .
lowQualScore : 55 0 555555 555 0 0 0 000000000000 33 7 77 0 555 888888 5 88 0 5 5 2 2 5555555555 6 00 88 0 0 0 0 0 2 6 2 7 555555 222222 2 7 2 7 2222 7 99 7 6666666 7 7 1 4 000 22 7 7 2222 7 0 7 3 222 7 7 777 222222 7 1111 11111111111111111111 5555555 0 0 7 7 1 7 1111 0 7 4 1111111 7 7 444444444444 99 0 0 4 6 0 0 6666 0 1 0 000 4 55555 1111 888 3 33 22 7 7777777 2 7 22 7 3 7 88 7 222222 2 7 5555555 00000000 77 22 00 0 88888888888888888888 8 88888 777 3 77 7 3 3 0 888888 00 8 0 0 888 0 2 000 0 0 66 99 0 1 3333 1 11 9 11 3 4
consensus : ATTATATATTGATATNCTAAAGCAAATACTTACATGTATGTACTGGTATAGACTANAACNTTCANCTTCTAACCTACTAAGGGCAGCTTTCAA-TGAG-GCAAGTCTAACACCACTAA-CAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGAAAAA---CTG------CATATTGATTCTGNCCCTTTGCAAAACACTTAGTGAAAACAAATT-CAAA-TT-AAATTGTATATAAAAAA--GCAA-CTTCGT-AA-TAATTTCTCAAACTTTT-GGGAAAATGTTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------AGG-ACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAGAAA-CAGGCAG-ATATGAAAGA-AAAATATAATAGCCATGGTAAAAATGAAA-TTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT----CAAATGAA-A-CCCGGAGTTTACCGTTCAA-TTATGCCAA-TAC------TTAATTGTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGCACAACAT-A------AATT-NTT--ATGCAT--GTTCTA-CATGCGC----AC---ATATA------TACTATTGTATANTGT-TTATATAANTTGGTAT-TTTTGATGCGCT-AACTCTCTGTTC-GCATGTCATGCAACTCAGT-GA-T--A-ATTTCTC--TTT-GTTATCC-TTTGTTTATG---TGATT-TTGGA-C-ACT-ATGT-ATCATTG--A-TGCTCC--T-ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTTCT-ATTCTAT
Reference ( family-609 ) : ATTATATA--GATATTCTAAAGCAAATATTTACATGTATGTACTGGTATAGACTAT--CTTTCATCTTCTAACCTNCTAAGGGCAGCTTTCAAATGAG-GCAAGTCTAACACCACTAANCAGTGACTGGTATTNCAGTATTTTATTCTA-CAGTGAAAAA---CTG------CATATTGACTCTGNCCCTTTGCAAAACACTTAGTGAAAACAAATT-CAAA-TT-AAATTGTATATAAAAAA--GCAA-CTTCGT-AA-TAATTTCTCAAACTTTT-GGGAAAATGTTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------AGG-ACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAGAAA-CAGGCAG-ATATGAAAGA-AAAATATAATAACTATGGTAAAAATGAAA-TTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------CG-----TACCTC------AAGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT----CAAATGAA-A-CCCGGAGTTTACCGTTCAA-TTATGCCAA-TAT------TTAATTGTAAATTTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGCACAACAT-A------AATT-NTT--ATGCAT--GTTCTA-CATGCGC----AC---ATATA------TACTATTGTATANTGT-TTATATANGNTGGTAT-TTTTGATGCGCTAAACTCTCTGTTC-GCATGTCATGCAACTCAGT-GA-T--A-ATTTCTC--TTT-GTTATCC-TTTGTTTATG---TGATT-TTGGA-A-ACT-ATGT-ATCATTG--A-TGCTCC--T-ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTTCT-ATTCTAT
gi|1 : ATTATATATTGATATGCTAAAGCAAATACTTA------TGTACTGGTATAGACTAGAACATTCAACTTCTAACCTACTAAGGGCAGCTTTCAA-TGAGTGCAAGTCTAACACCACTAA-CAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGGAAAA---CTA------CATATTGA-TCTGTCC-TTTGCAAAACACTTAGTGAAAACAAATTACAAAGTT-AAAT-GTATATAAAAAA--GCAATCTTCGT-AA-TAATTTCTCAAACTTTT-GGGAATAT-TTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAG-ACAAAAGATCCAT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------AGG-ACAATCGTAG--ATCTCTCG---CAAAATTC--AGAATTAGTAATCACCTG-TCT-TGGG----TAGAAA-CAGGCAG-ATATGAAAGA-AAAATATAATAGCCATGATAAAA-TGAAA-TTCTTCCTA---GAT------GTGAAAGA-TTTG----TCAATA---C---------TG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT-----AAATGAA-A-CCC-AAGTTTACCATTCAA-TTATGCTAA-TAC------TTAATTGTAAATCTCAACTA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTAT-CTTAGAC-TA---AACAT-A------AATT-CTT--ATGCAT--GTTCTA-CATGCGC----AC---AT-TA------TACTATTGTATAATGTATTACATATATTGATAT-TTTTGATGTGCT-AACTCTC-GTTCAGCATGTCATGCAACTCCGT-GA-T--A-ATTTCTG--TTT-GTTATCC-TTTGTTTATG---TGATT-TTGGA-A-A-T-ATGT-ATCA-TG--A-TGCTCC--C-ATGTGGG-CCAA--ATTGGTTGAATAAA--TATTGCT-ATTCTAT
gi|10 : -TTCTTT-CTAGAATGTTCA-CTGT-AC--ATATAGCAAT-TGTAGCGGG-AAGTT----A-A-AAC-T-A--TTATGTTAAAACCCATCCAAA--ATAGTATT--CTAA--AATGC-TGA-CTATTTA--ACA-GGATG-----AT-T----CGAATGAA-
gi|11 : cAATTACTACGGTGAACGTGAAA-TTCTTCCTA---GATACACGGGTGAAAGAATCCC----TCAACATAGC---------CGGCCCCCACCTA------AAGTTCAAA-GGA-G-G-ATGGATT-A----TA-TTTgatttattttttcgatattttataatcatgtaagatttagttg
gi|12 : ACTCAGT-GA-TTCATATTTCTC--T---GTTATCC-TTT-TTTATG---TGATT-TTG-A-C-ACC-ATAT-ATCATTT--AGTGCTCC----ATGTGGGCCC-A--AT--GTT-AATAAA--TATTCTTAATTCTAaattttttcta
gi|13 : --TTT-GTTATCC-TTTGTTTATG---TGATT-TTGGA-C-AC---TGT-ATCA-TG--A-TGCTCCTAT-ATATGGGCCCAA--ATTGGTTGAATAAA--TA-TTCT-ATTCTATc
gi|14 : TATCC-TTTGTTTATG---TGATG-TTGAA-C-ACT-ATGT-ATCAT-G--A-TGCTCC--T-CTGTGGGCCCAA--ATTAGTTGAATGAA--TATTTCT-ATTCTATa
gi|15 : cTATCT-TTTGTTTATG---TCATTATTGAA-C-ACT-ATGT-ATAATTG--A-TGCTCC--TAATGTGGGCCCAAATATTTGTTGAATAAA---A-TTCT-ATTCTAtct
gi|16 : TATCA-TTTGTGTATG---TGATA-TTGGA-C-ACT-ATGT-ATCAT-G--A-TGCTCC--T-ATGTGGGCCCAA--ATTCGTTGAATAAA--TA-TTCT-ATTATAT
gi|17 : TTG----TCAATA---C---------TC-----TA--------------TCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCttt
gi|18 : -ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTT-T-ATTCTAT
gi|19 : A--AG-CA-------AGG-ACAATCG-AGTAAT-TCTCG---CAAA
gi|2 : TTTTATTCTA-CAGTGAAAAA---CTG------CATATTGACTC-GACCCGTTGCAAAACACTTAGTGAAAATAA-TT-CAAA-TT------GTATATAAAAAA--GCAA-CTTCGTTAA-TAATTTCTCAAACTTTG-GCGAGAATGTTCGCACTTGCTATAGGCAAG-TTTTGGAAAATT----AAGTAC------ATACTTTCAATACAAAAGATCCTT-CAATT-CGAACAATA-CCTGAATTT----A-AAA--AT-CA-------AGGGACAATCG-AG-AATGTCTC----CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAGAAAACAGGCAG-ATATGAAAGAGAAAATA-AATAGCCATGGTAAAAATGAAAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------TG-----TACCTC-------AGTTCAAC-AGA-AGG-ATG-ATT-A----CATTTTTTTACTTGAATGTCCA-CTATAAC--A----ACAAT-TTTAGAGGAGGAGTTTT----A-AAC-TGATTTT-T-TTAAAACCTATCCAAA-CCTAGCACTACTT-AC--ATGC-TGATCTG-TTA--ACATGGATT-----AGGT----CAAAATAA-A-CCCAGAGTTTACCATTCAATTTATGACAATTAC------TTAATT-TAGAATTCAA-TA--CAAGAAAACAAACA-ACTT-GTGGAATATAAAGTATTGTC------TAG-TATA-TTAGA-----A-AACA--A------AATTCCTT--ATGCAT--GTTCTACCATGCGC----AC---AT-TA------TCTTATTGTAACATGT-ATTTACAATATAGTATATTTTGAT-CGCT-AACTCTCTGTTC-GCATGTCATGCAACTCAGTCGATT--A-ATTTCTCGTTTC-GTTATCCTTTTGTTTATAAATTGATT-TTGGACC-ACT-ATGT-ATCA-TGACA-TGCGCC--T-ATGTGGG-CCAA--ATTGGTTGAATAAACTCATTTCT-ATTCTAT
gi|3 : caggATTATATA--GATATTCTAAAGCAAATATTTACATGTATGTACTGGTATAGACTAT--CTTTCATCTTCTAACTTTTTAAGGGCAGC--------------AAGTCTAACACCATTA-CTAGTGACTGGTATTGTAGTATTTTATTCTA-CAATGAAAAA---CTAACGTTACATATTGATT-TGTCCCTTTGCAAAACACTGAGTGAAAACAAATT-------T-AAATTGTATTTAAAAAG--GCAA---------------------------T-GGGAAAATATCCGTCCCTGTTATATGCAGGGTTTTGGAA---T------GTAT------CTACTTTCAGCACAAAAGATCATT-AAATTTTGCAAACTA-CCTGAATTT----A-AAA--AG-CC-------GGG-ATAATCA-GGCAAT-TTTCA---CTAAATTC--AGAATTAGTAATCAT-TG-TCTACAGG----TAGATA-CAGACAG-ATATGAAAGA-AAAAT-TAATAACTATGGTAAAAATGAAA-TTCTTCCCAGCTGGT------GTGAGAGACTTTG----TCAATA---CTGTACGTCATG-----TACCTC------AAGTTCAAC-AGA-A-G-ATGAATT-ACATGCA-TTCTTTAATAGAATGTCCA-CTAT-AC--A----ATAATATTTAGAGGA-GAGTTTTTGA-ATAA---GA---T-T-TTAAAACCTTTCCAAATCCTAACAATAtct
gi|4 : cAAA-TTTAAATTGTACATAAAACCCTGCA--CTACGT-AA-CAACTTTTTAAATTTTT-GGGAAAAT-------------ATATGCAAAGTTGTGGAAAATT----A--------------CTTT------------TCCTT-T------GAAAAATA-CCCGAATTT----ATAAATGAC-CATAAATCCAAG-ATAATCG-GGTAAT-TCTCG---CTGAATTC--AGAATTAGCAATCAT-TG-CTTACGGG----TAGAAA-CAAGCAG-ATATGAAAGA-AAAA-ATAATAACTATGGTAAAAATCGAA-TTCTTCCAA---GGT------GTGAGAGAGTCTGTCGATCAATA---C---------TG-----TATCTCAAGTGAAAGTTCAAC-AGA-a
gi|4 : GAAAGTTCA-ACAG-AC--G----TTAAT-TCGGGGGGA-GAGTTTT--A-A-------A--TT-C-TT--------TCCAAA-CCATGCAATGC-TGAT-A------GATCTGTTTATTATATGGA-T-----ATGT----CATATGAACA-TTTCGAGTTTACTGTTCTA-CT------G-TAT------T--ATTGTAACTTTCAA-TATTTAAGAAAAT-TACA-ACAT-GTGGAA------------------------TATATTTAGAC-TACACAACAT-ATAGACTAGTT-ACT--ATGCAT--GCACTA--GTG-GTTTTAAC---G-ATA------TACTA--GTATAGTGcgttaattcggggggagagttttaaattctttccaaaccatgcaatgctgatagatctgtttattatatggatatgtcatatgaacatttcgagtttactgttctactgtattattgtaactttcaatatttaagaaaattacaacatgtggaatatatttagactacacaacatatagactagttactatgcatgcactagtggttttaacgatatactagtatagtgaa
gi|5 : aaatttaaattgtacataaaaccctgcactacgtaacaactttttaaatttttgggaaaatatatgcaaagttgtggaaaattacttttcctttgaaaaatacccgaatttataaatgaccataaatccaagataatcgggtaattctcgctgaattcagaattagcaatcattgcttacgggtagaaacaagcagatatgaaagaaaaaataataactatggtaaaaatcgaattcttccaaggtgtgagagagtctgtcgatcaatactgtatctcaagtTC------AGGTTCAACTAGATA-GTATGAATTTA----CA-TTTTTTACTCGAATGTCCAGCTATCACCAA----ACAAT-TTTAAAGGA-GAGTTTT--TTA-AAC-ATA--TT-T-TTAAAACCTATCCAAA-C-TA-CACTACTTAACCAATGCCTGATCTG-TTA---CATGGATTTTACCATGTAGTGCAAATGAA-AACCCGGAGTAT---GTACAA---ACGT-AA-T------------TTGTAAATCTCAA-TA--CAAGAAAAC-AACATACTTTGTTGA-TAT-AAGT-ATGTC------TAGTTATATTTAGACATGCA--ACATTA------AATT-CTTTTATGCATCTGTTCTA-CATGCGC----ATTATATATA------TACTATTGTATATT---TTATATAAGTTGGTAT-TTTTGATG-GCTAAACTCTCTGTTC-GCATGTCATGCAACTCAGT-AA-T--A-TTTTCTC--TTTTGTTATCC-TTTGTTTATG---TGATT-TGGGA-ACACTTATGCGATCATTG--A-TGC--C--T-ATGTGG-CCCAA---TTAGTTGAATAAA--TATTTCT-ATTCTATaa
gi|6 : tAACCTACTAAGAGCAGCTTTCAAATGAG-GCAAGTCTAACACCACTAAACA-TGACTGGTATTCCAGTATTTTATTCTACCAGTGAAAAAAACCTG------CATATTGATTCTGACCTTTTGCAAAA-AC-TAGTGAAAACAAATT-C-------AAATTGTATATTAAAAA--GCAA-CTTCGT-AATTGTTTTCTCAAACTTTTGGGGAAAATGTTCGTACCTGC-ATATGCAGG---TTGGAAAATTAAGAAAGTAC------ATACTTTCAGCACAAAAGATCCCTGCAATTTCGAAAAATATCCTGAATTTTTAAA-AAA--AGCCA-------AGG-ACAATCG-AGTAA--TCTCGCAACAAAATTCAAAGAATTAGTAATCAC-TGCTCTACGGGCGTTTA-AAA-CA-TCAGTATATTAAAAATAAAAcc
gi|7 : CTATATGCAAGGTTTTGGAAAATT----AAGTACCTGTACATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------AGG-ACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAGAAA-CAGGCAG-ATATGAAAGA-AAAATA-AATAGCCATGGTAAAAATGAAA-TTCTTCCTA---GAT------GTGAAAGAATTTG----TCAACA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--T-A-AACATGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGAAT-----AT
gi|8 : AAAACCTATCCAAA-CCTAGCACT--------------------G-T------ATGGATT-----ATGT----CAAATGAA-AACCCGGAGTTTACCGTTCAA-TTATGCCAA-TACATGTACTTAATTGTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGTACAACAT-A------AATT-ATT--ATGCAT--GTTCTA-CATGCGC----AT---ATATATACATGTACTATTGTATAT--T-TTATATA
gi|9 : --TT-T-TTAAAACCTTTCCAAA-GCTAGCATTACTTAGC-AATAC-GGATATG-TTA--ACATGGATT-----AGGT----CAAAAGAACA-TTATGAGGTTACCGTTCAA-TTATTCCAA-TAT------TTAATTGTAAATTTCAA-TA--CAAGAAAAC-ACTATACTT-GTTGAATAT--AGTCATGTTTAAATGTAGTTATATTTAGAT-TG--CAACAT--------AATT-ATT--at
Alignments
lowQualScore : 11 222222 111 222222222222 1 1 111 222222 444444444 11 1 111111 111111 1111 1111111 1 111 1111 1 111 111 111111 1111 33333333333333333333 111111 1111 1 1111111 222222222222 1 11111 1111 111 11111111111 111111 111111 2222222 22222222 11 22222222222222222222 11111 1 11 1 1 1 111111 11 11 1111
lowQualScore : 88 1 999999 999 1 1 333333333333 3 6 0 777 888888 999 1 6 2 3 3 111111111 0 11 88 1 8 8 1 8 3 0 3 1 666666 999999 5 6 3 6 4444 6 77 5 8888888 5 5 7 1 000 99 6 6 4444 6 1 6 3 222 1 6 111 999999 5 2222 22222222222222222222 444444 5 5 5 5 5 0 5 2222 5 5 1 3333333 5 5 000000000000 66 5 5 4 3 2 2 6666 5 0 0 777 0 22222 2222 555 9 44444444444 999999 6 6 99 6 7 6 99 6 999999 3 1 5555555 55555555 77 99 11 8 88888888888888888888 0 33333 1 3 88 3 7 3 0 555555 99 0 5 888 5 55 5 5 5 22 66 5 0000 1 1 66 1 66 7 4
lowQualScore : .. . ...... ... . . ............ . . . ... ...... ... . . . . . ......... . .. .. . . . . . . . . . ...... ...... . . . . .... . .. . ....... . . . . ... .. . . .... . . . . ... . . ... ...... . .... .................... ...... . . . . . . . .... . . . ....... . . ............ .. . . . . . . .... . . . ... . ..... .... ... . ........... ...... . . .. . . . .. . ...... . . ....... ........ .. .. .. . .................... . ..... . . .. . . . . ...... .. . . ... . .. . . . .. .. . .... . . .. . .. . .
lowQualScore : 55 0 555555 555 0 0 000000000000 3 7 0 555 888888 000 0 5 5 2 2 555555555 8 00 88 0 0 0 0 0 2 6 2 0 555555 222222 2 7 2 7 2222 7 99 7 6666666 7 7 1 4 000 22 7 7 2222 7 0 7 3 222 7 7 777 222222 7 1111 11111111111111111111 444444 4 0 0 7 7 1 7 1111 0 7 4 1111111 7 7 444444444444 99 0 0 4 6 0 0 6666 0 1 0 000 4 55555 1111 888 3 77777777777 222222 7 7 22 7 3 7 88 7 222222 2 7 5555555 00000000 77 22 00 0 88888888888888888888 8 88888 0 3 77 3 3 3 0 888888 00 8 0 888 0 22 0 0 0 66 99 0 3333 1 9 11 9 11 3 4
consensus : ATTATATATTGATATNCTAAAGCAAATACTTACATGTATGTACTGGTATAGACTANAACNTTCANCTTCTAACCTACTAAGGGCAGCTTTCAA-TGAG-GCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGAAAAA---CTG------CATATTGATTCTGNCCCTTTGCAAAACACTTAGTGAAAACAAATT-CAAA-TT-AAATTGTATATAAAAAA--GCAA-CTTCG-TAA-TAATTTCTCAAACTTTT-GGGAAAATGTTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATATAATAGCCATGGTAAAAATG-AAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT----CAAATGAA-A-CCCGGAGTTTACCGTTCAA-TTATGCCAA-TAC------TTAATT-GTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGCACAACAT-A------AATT-NTT--ATGCAT--GTTCTA-CATGCGC----AC---ATATA------TACTATTGTATANTGT-TTATATAANTTGGTAT-TTTTGATGCGCTAA-CTCTCTGTTC-GCATGTCATGCAACTCAGT-GA-T--A-ATTTCTC--TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A-CAC-TATGT-ATCATTG--A-TGCTCC--T-ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTTCT-ATTCTAT
Reference ( family-609 ) : ATTATATATTGATATNCTAAAGCAAATACTTACATGTATGTACTGGTATAGACTANAACNTTCANCTTCTAACCTACTAAGGGCAGCTTTCAA-TGAG-GCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGAAAAA---CTG------CATATTGATTCTGNCCCTTTGCAAAACACTTAGTGAAAACAAATT-CAAA-TT-AAATTGTATATAAAAAA--GCAA-CTTCG-TAA-TAATTTCTCAAACTTTT-GGGAAAATGTTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATATAATAGCCATGGTAAAAATG-AAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT----CAAATGAA-A-CCCGGAGTTTACCGTTCAA-TTATGCCAA-TAC------TTAATT-GTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGCACAACAT-A------AATT-NTT--ATGCAT--GTTCTA-CATGCGC----AC---ATATA------TACTATTGTATANTGT-TTATATAANTTGGTAT-TTTTGATGCGCTAA-CTCTCTGTTC-GCATGTCATGCAACTCAGT-GA-T--A-ATTTCTC--TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A-CAC-TATGT-ATCATTG--A-TGCTCC--T-ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTTCT-ATTCTAT
gi|1 : ATTATATATTGATATGCTAAAGCAAATACTTA------TGTACTGGTATAGACTAGAACATTCAACTTCTAACCTACTAAGGGCAGCTTTCAA-TGAGTGCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGGAAAA---CTA------CATATTGAT-CTGTCC-TTTGCAAAACACTTAGTGAAAACAAATTACAAAGTT-AAAT-GTATATAAAAAA--GCAATCTTCG-TAA-TAATTTCTCAAACTTTT-GGGAATAT-TTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAG-ACAAAAGATCCAT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATCGTAG--ATCTCTCG---CAAAATTC--AGAATTAGTAATCACCTG-TCT-TGGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATATAATAGCCATGATAAAA-TG-AAATTCTTCCTA---GAT------GTGAAAGA-TTTG----TCAATA---C---------TG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT-----AAATGAA-A-CCC-AAGTTTACCATTCAA-TTATGCTAA-TAC------TTAATT-GTAAATCTCAACTA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTAT-CTTAGAC-TA---AACAT-A------AATT-CTT--ATGCAT--GTTCTA-CATGCGC----AC---AT-TA------TACTATTGTATAATGTATTACATATATTGATAT-TTTTGATGTGCTAA-CTCTC-GTTCAGCATGTCATGCAACTCCGT-GA-T--A-ATTTCTG--TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A--AA-TATGT-ATCA-TG--A-TGCTCC--C-ATGTGGG-CCAA--ATTGGTTGAATAAA--TATTGCT-ATTCTAT
gi|10 : -TTCTTT-CTAGAATGTTCA-CTGT-AC--ATATAGCAAT-TGTAGCGGG-AAGTT----A-A-AAC-T-A--TTATGTTAAAACCCATCCAAA--ATAGTATT--CTAA--AATGC-TGA-CTATTTA--ACA-GGATG-----AT-T----CGAATGAA-
gi|11 : cAATTACTACGGTGAACGTG-AAATTCTTCCTA---GATACACGGGTGAAAGAATCCC----TCAACATAGC---------CGGCCCCCACCTA------AAGTTCAAA-GGA-G-G-ATGGATT-A----TA-TTTgatttattttttcgatattttataatcatgtaagatttagttg
gi|12 : ACTCAGT-GA-TTCATATTTCTC--T--GTTATCC-TTT-TTTATG---TGATT-TTG--A-CAC-CATAT-ATCATTT--AGTGCTCC----ATGTGGGCCC-A--AT--GTT-AATAAA--TATTCTTAATTCTAaattttttcta
gi|13 : --TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A-CAC---TGT-ATCA-TG--A-TGCTCCTAT-ATATGGGCCCAA--ATTGGTTGAATAAA--TA-TTCT-ATTCTATc
gi|14 : TATCC-TTTGTTTATG---TGATG-TTGA-A-CAC-TATGT-ATCAT-G--A-TGCTCC--T-CTGTGGGCCCAA--ATTAGTTGAATGAA--TATTTCT-ATTCTATa
gi|15 : cTATCT-TTTGTTTATG---TCATTATTGA-A-CAC-TATGT-ATAATTG--A-TGCTCC--TAATGTGGGCCCAAATATTTGTTGAATAAA---A-TTCT-ATTCTAtct
gi|16 : TATCA-TTTGTGTATG---TGATA-TTGG-A-CAC-TATGT-ATCAT-G--A-TGCTCC--T-ATGTGGGCCCAA--ATTCGTTGAATAAA--TA-TTCT-ATTATAT
gi|17 : TTG----TCAATA---C---------TC-----TA--------------TCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCttt
gi|18 : -ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTT-T-ATTCTAT
gi|19 : A--AG-CA-------A-GGACAATCG-AGTAAT-TCTCG---CAAA
gi|2 : TTTTATTCTA-CAGTGAAAAA---CTG------CATATTGACTC-GACCCGTTGCAAAACACTTAGTGAAAATAA-TT-CAAA-T------TGTATATAAAAAA--GCAA-CTTCGTTAA-TAATTTCTCAAACTTTG-GCGAGAATGTTCGCACTTGCTATAGGCAA-GTTTTGGAAAATT----AAGTAC------ATACTTTCAATACAAAAGATCCTT-CAA-TTCGAACAATA-CCTGAATTT----A-AAA--AT-CA-------AGGGACAATCG-AG-AATGTCTC----CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAGAAAACAGGCAG-ATATGAAAGAGAAAATA-AATAGCCATGGTAAAAATGAAAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------TG-----TACCTC------A-GTTCAAC-AGA-AGG-ATG-ATT-A----CATTTTTTTACTTGAATGTCCA-CTATAAC--A----ACAAT-TTTAGAGGAGGAGTTTT----A-AAC-TGATTTT-T-TTAAAACCTATCCAAA-CCTAGCACTACTT-AC--ATGC-TGATCTG-TTA--ACATGGATT-----AGGT----CAAAATAA-A-CCCAGAGTTTACCATTCAATTTATGACAATTAC------TTAATT--TAGAATTCAA-TA--CAAGAAAACAAACA-ACTT-GTGGAATATAAAGTATTGTC------TAG-TATA-TTAGA-----A-AACA--A------AATTCCTT--ATGCAT--GTTCTACCATGCGC----AC---AT-TA------TCTTATTGTAACATGT-ATTTACAATATAGTATATTTTGAT-CGCTAA-CTCTCTGTTC-GCATGTCATGCAACTCAGTCGATT--A-ATTTCTCGTTTCGTTATCCTTTTGTTTATAAATTGATT-TTGG-ACCAC-TATGT-ATCA-TGACA-TGCGCC--T-ATGTGGG-CCAA--ATTGGTTGAATAAACTCATTTCT-ATTCTAT
gi|3 : caggATTATATA--GATATTCTAAAGCAAATATTTACATGTATGTACTGGTATAGACTAT--CTTTCATCTTCTAACTTTTTAAGGGCAGC--------------AAGTCTAACACCATT-ACTAGTGACTGGTATTGTAGTATTTTATTCTA-CAATGAAAAA---CTAACGTTACATATTGATT-TGTCCCTTTGCAAAACACTGAGTGAAAACAAATT-------T-AAATTGTATTTAAAAAG--GCAA---------------------------T-GGGAAAATATCCGTCCCTGTTATATGCAGGGTTTTGGAA---T------GTAT------CTACTTTCAGCACAAAAGATCATT-AAATTTTGCAAACTA-CCTGAATTT----A-AAA--AG-CC-------G-GGATAATCA-GGCAAT-TTTCA---CTAAATTC--AGAATTAGTAATCAT-TG-TCTACAGG----TAG-ATACAGACAG-ATATGAAAGA-AAAAT-TAATAACTATGGTAAAAATG-AAATTCTTCCCAGCTGGT------GTGAGAGACTTTG----TCAATA---CTGTACGTCATG-----TACCTC------AAGTTCAAC-AGA-A-G-ATGAATT-ACATGCA-TTCTTTAATAGAATGTCCA-CTAT-AC--A----ATAATATTTAGAGGA-GAGTTTTTGA-ATAA---GA---T-T-TTAAAACCTTTCCAAATCCTAACAATAtct
gi|4 : cAAA-TTTAAATTGTACATAAAACCCTGCA--CTACG-TAA-CAACTTTTTAAATTTTT-GGGAAAAT-------------ATATGCAAAGTTGTGGAAAATT----A--------------CTTT------------TCCTT-T------GAAAAATA-CCCGAATTT----ATAAATGAC-CATAAATCCA-AGATAATCG-GGTAAT-TCTCG---CTGAATTC--AGAATTAGCAATCAT-TG-CTTACGGG----TAG-AAACAAGCAG-ATATGAAAGA-AAAA-ATAATAACTATGGTAAAAATC-GAATTCTTCCAA---GGT------GTGAGAGAGTCTGTCGATCAATA---C---------TG-----TATCTCAAGTGAAAGTTCAAC-AGA-a
gi|4 : GAAAGTTCA-ACAG-AC--G----TTAAT-TCGGGGGGA-GAGTTTT--A-A-------A--TT-C-TT--------TCCAAA-CCATGCAATGC-TGAT-A------GATCTGTTTATTATATGGA-T-----ATGT----CATATGAACA-TTTCGAGTTTACTGTTCTA-CT------G-TAT------T--ATT-GTAACTTTCAA-TATTTAAGAAAAT-TACA-ACAT-GTGGAA------------------------TATATTTAGAC-TACACAACAT-ATAGACTAGTT-ACT--ATGCAT--GCACTA--GTG-GTTTTAAC---G-ATA------TACTA--GTATAGTGcgttaattcggggggagagttttaaattctttccaaaccatgcaatgctgatagatctgtttattatatggatatgtcatatgaacatttcgagtttactgttctactgtattattgtaactttcaatatttaagaaaattacaacatgtggaatatatttagactacacaacatatagactagttactatgcatgcactagtggttttaacgatatactagtatagtgaa
gi|5 : aaatttaaattgtacataaaaccctgcactacgtaacaactttttaaatttttgggaaaatatatgcaaagttgtggaaaattacttttcctttgaaaaatacccgaatttataaatgaccataaatccaagataatcgggtaattctcgctgaattcagaattagcaatcattgcttacgggtagaaacaagcagatatgaaagaaaaaataataactatggtaaaaatcgaattcttccaaggtgtgagagagtctgtcgatcaatactgtatctcaagtTC------AGGTTCAACTAGATA-GTATGAATTTA----CA-TTTTTTACTCGAATGTCCAGCTATCACCAA----ACAAT-TTTAAAGGA-GAGTTTT--TTA-AAC-ATA--TT-T-TTAAAACCTATCCAAA-C-TA-CACTACTTAACCAATGCCTGATCTG-TTA---CATGGATTTTACCATGTAGTGCAAATGAA-AACCCGGAGTAT---GTACAA------------AC------GTAATTTGTAAATCTCAA-TA--CAAGAAAAC-AACATACTTTGTTGA-TAT-AAGT-ATGTC------TAGTTATATTTAGACATGCA--ACATTA------AATT-CTTTTATGCATCTGTTCTA-CATGCGC----ATTATATATA------TACTATTGTATATT---TTATATAAGTTGGTAT-TTTTGATG-GCTAAACTCTCTGTTC-GCATGTCATGCAACTCAGT-AA-T--A-TTTTCTCT-TTTGTTATCC-TTTGTTTATG---TGATT-TGGGAA-CACTTATGCGATCATTG--A-TG--CC--T-ATGT-GGCCC-A--ATTAGTTGAATAAA--TATTTCT-ATTCTATaa
gi|6 : tAACCTACTAAGAGCAGCTTTCAAATGAG-GCAAGTCTAACACCACTAAACA-TGACTGGTATTCCAGTATTTTATTCTACCAGTGAAAAAAACCTG------CATATTGATTCTGACCTTTTGCAAAA-AC-TAGTGAAAACAAATT-C-------AAATTGTATATTAAAAA--GCAA-CTTCG-TAATTGTTTTCTCAAACTTTTGGGGAAAATGTTCGTACCTGC-ATATGCAGG---TTGGAAAATTAAGAAAGTAC------ATACTTTCAGCACAAAAGATCCCTGCAATTTCGAAAAATATCCTGAATTTTTAAA-AAA--AGCCA-------A-GGACAATCG-AGTAA--TCTCGCAACAAAATTCAAAGAATTAGTAATCAC-TGCTCTACGGGCGTTTA--AAACA-TCAGTATATTAAAAATAAAAcc
gi|7 : CTATATGCAAGGTTTTGGAAAATT----AAGTACCTGTACATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATA-AATAGCCATGGTAAAAATG-AAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAACA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--T-A-AACATGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGAAT-----AT
gi|8 : AAAACCTATCCAAA-CCTAGCACT--------------------G-T------ATGGATT-----ATGT----CAAATGAA-AACCCGGAGTTTACCGTTCAA-TTATGCCAA-TACATGTACTTAATT-GTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGTACAACAT-A------AATT-ATT--ATGCAT--GTTCTA-CATGCGC----AT---ATATATACATGTACTATTGTATAT--T-TTATATAA
gi|9 : --TT-T-TTAAAACCTTTCCAAA-GCTAGCATTACTTAGC-AATAC-GGATATG-TTA--ACATGGATT-----AGGT----CAAAAGAACA-TTATGAGGTTACCGTTCAA-TTATTCCAA-TAT------TTAATT-GTAAATTTCAA-TA--CAAGAAAAC-ACTATACTT-GTTGAATAT--AGTCATGTTTAAATGTAGTTATATTTAGAT-TG--CAACAT--------AATT-ATT--t
Alignments
lowQualScore : 11 222222 111 222222222222 1 1 111 222222 444444444 11 1 111111 111111 1111 1111111 1 111 1111 1 111 111 111111 1111 33333333333333333333 111111 1111 1 1111111 222222222222 1 11111 1111 111 11111111111 111111 111111 2222222 22222222 11 22222222222222222222 11111 1 11 1 1 1 111111 11 11 1111
lowQualScore : 88 1 999999 999 1 1 333333333333 3 6 0 777 888888 999 1 6 2 3 3 111111111 0 11 88 1 8 8 1 8 3 0 3 1 666666 999999 5 6 3 6 4444 6 77 5 8888888 5 5 7 1 000 99 6 6 4444 6 1 6 3 222 1 6 111 999999 5 2222 22222222222222222222 444444 5 5 5 5 5 0 5 2222 5 5 1 3333333 5 5 000000000000 66 5 5 4 3 2 2 6666 5 0 0 777 0 22222 2222 555 9 44444444444 999999 6 6 99 6 7 6 99 6 999999 3 1 5555555 55555555 77 99 11 8 88888888888888888888 0 33333 1 3 88 3 7 3 0 555555 99 0 5 888 5 55 5 5 5 22 66 5 0000 1 1 66 1 66 7 4
lowQualScore : .. . ...... ... . . ............ . . . ... ...... ... . . . . . ......... . .. .. . . . . . . . . . ...... ...... . . . . .... . .. . ....... . . . . ... .. . . .... . . . . ... . . ... ...... . .... .................... ...... . . . . . . . .... . . . ....... . . ............ .. . . . . . . .... . . . ... . ..... .... ... . ........... ...... . . .. . . . .. . ...... . . ....... ........ .. .. .. . .................... . ..... . . .. . . . . ...... .. . . ... . .. . . . .. .. . .... . . .. . .. . .
lowQualScore : 55 0 555555 555 0 0 000000000000 3 7 0 555 888888 000 0 5 5 2 2 555555555 8 00 88 0 0 0 0 0 2 6 2 0 555555 222222 2 7 2 7 2222 7 99 7 6666666 7 7 1 4 000 22 7 7 2222 7 0 7 3 222 7 7 777 222222 7 1111 11111111111111111111 444444 4 0 0 7 7 1 7 1111 0 7 4 1111111 7 7 444444444444 99 0 0 4 6 0 0 6666 0 1 0 000 4 55555 1111 888 3 77777777777 222222 7 7 22 7 3 7 88 7 222222 2 7 5555555 00000000 77 22 00 0 88888888888888888888 8 88888 0 3 77 3 3 3 0 888888 00 8 0 888 0 22 0 0 0 66 99 0 3333 1 9 11 9 11 3 4
consensus : ATTATATATTGATATNCTAAAGCAAATACTTACATGTATGTACTGGTATAGACTANAACNTTCANCTTCTAACCTACTAAGGGCAGCTTTCAA-TGAG-GCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGAAAAA---CTG------CATATTGATTCTGNCCCTTTGCAAAACACTTAGTGAAAACAAATT-CAAA-TT-AAATTGTATATAAAAAA--GCAA-CTTCG-TAA-TAATTTCTCAAACTTTT-GGGAAAATGTTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATATAATAGCCATGGTAAAAATG-AAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT----CAAATGAA-A-CCCGGAGTTTACCGTTCAA-TTATGCCAA-TAC------TTAATT-GTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGCACAACAT-A------AATT-NTT--ATGCAT--GTTCTA-CATGCGC----AC---ATATA------TACTATTGTATANTGT-TTATATAANTTGGTAT-TTTTGATGCGCTAA-CTCTCTGTTC-GCATGTCATGCAACTCAGT-GA-T--A-ATTTCTC--TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A-CAC-TATGT-ATCATTG--A-TGCTCC--T-ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTTCT-ATTCTAT
Reference ( family-609 ) : ATTATATATTGATATNCTAAAGCAAATACTTACATGTATGTACTGGTATAGACTANAACNTTCANCTTCTAACCTACTAAGGGCAGCTTTCAA-TGAG-GCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGAAAAA---CTG------CATATTGATTCTGNCCCTTTGCAAAACACTTAGTGAAAACAAATT-CAAA-TT-AAATTGTATATAAAAAA--GCAA-CTTCG-TAA-TAATTTCTCAAACTTTT-GGGAAAATGTTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATATAATAGCCATGGTAAAAATG-AAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT----CAAATGAA-A-CCCGGAGTTTACCGTTCAA-TTATGCCAA-TAC------TTAATT-GTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGCACAACAT-A------AATT-NTT--ATGCAT--GTTCTA-CATGCGC----AC---ATATA------TACTATTGTATANTGT-TTATATAANTTGGTAT-TTTTGATGCGCTAA-CTCTCTGTTC-GCATGTCATGCAACTCAGT-GA-T--A-ATTTCTC--TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A-CAC-TATGT-ATCATTG--A-TGCTCC--T-ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTTCT-ATTCTAT
gi|1 : ATTATATATTGATATGCTAAAGCAAATACTTA------TGTACTGGTATAGACTAGAACATTCAACTTCTAACCTACTAAGGGCAGCTTTCAA-TGAGTGCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGGAAAA---CTA------CATATTGAT-CTGTCC-TTTGCAAAACACTTAGTGAAAACAAATTACAAAGTT-AAAT-GTATATAAAAAA--GCAATCTTCG-TAA-TAATTTCTCAAACTTTT-GGGAATAT-TTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAG-ACAAAAGATCCAT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATCGTAG--ATCTCTCG---CAAAATTC--AGAATTAGTAATCACCTG-TCT-TGGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATATAATAGCCATGATAAAA-TG-AAATTCTTCCTA---GAT------GTGAAAGA-TTTG----TCAATA---C---------TG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT-----AAATGAA-A-CCC-AAGTTTACCATTCAA-TTATGCTAA-TAC------TTAATT-GTAAATCTCAACTA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTAT-CTTAGAC-TA---AACAT-A------AATT-CTT--ATGCAT--GTTCTA-CATGCGC----AC---AT-TA------TACTATTGTATAATGTATTACATATATTGATAT-TTTTGATGTGCTAA-CTCTC-GTTCAGCATGTCATGCAACTCCGT-GA-T--A-ATTTCTG--TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A--AA-TATGT-ATCA-TG--A-TGCTCC--C-ATGTGGG-CCAA--ATTGGTTGAATAAA--TATTGCT-ATTCTAT
gi|10 : -TTCTTT-CTAGAATGTTCA-CTGT-AC--ATATAGCAAT-TGTAGCGGG-AAGTT----A-A-AAC-T-A--TTATGTTAAAACCCATCCAAA--ATAGTATT--CTAA--AATGC-TGA-CTATTTA--ACA-GGATG-----AT-T----CGAATGAA-
gi|11 : cAATTACTACGGTGAACGTG-AAATTCTTCCTA---GATACACGGGTGAAAGAATCCC----TCAACATAGC---------CGGCCCCCACCTA------AAGTTCAAA-GGA-G-G-ATGGATT-A----TA-TTTgatttattttttcgatattttataatcatgtaagatttagttg
gi|12 : ACTCAGT-GA-TTCATATTTCTC--T--GTTATCC-TTT-TTTATG---TGATT-TTG--A-CAC-CATAT-ATCATTT--AGTGCTCC----ATGTGGGCCC-A--AT--GTT-AATAAA--TATTCTTAATTCTAaattttttcta
gi|13 : --TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A-CAC---TGT-ATCA-TG--A-TGCTCCTAT-ATATGGGCCCAA--ATTGGTTGAATAAA--TA-TTCT-ATTCTATc
gi|14 : TATCC-TTTGTTTATG---TGATG-TTGA-A-CAC-TATGT-ATCAT-G--A-TGCTCC--T-CTGTGGGCCCAA--ATTAGTTGAATGAA--TATTTCT-ATTCTATa
gi|15 : cTATCT-TTTGTTTATG---TCATTATTGA-A-CAC-TATGT-ATAATTG--A-TGCTCC--TAATGTGGGCCCAAATATTTGTTGAATAAA---A-TTCT-ATTCTAtct
gi|16 : TATCA-TTTGTGTATG---TGATA-TTGG-A-CAC-TATGT-ATCAT-G--A-TGCTCC--T-ATGTGGGCCCAA--ATTCGTTGAATAAA--TA-TTCT-ATTATAT
gi|17 : TTG----TCAATA---C---------TC-----TA--------------TCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCttt
gi|18 : -ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTT-T-ATTCTAT
gi|19 : A--AG-CA-------A-GGACAATCG-AGTAAT-TCTCG---CAAA
gi|2 : TTTTATTCTA-CAGTGAAAAA---CTG------CATATTGACTC-GACCCGTTGCAAAACACTTAGTGAAAATAA-TT-CAAA-T------TGTATATAAAAAA--GCAA-CTTCGTTAA-TAATTTCTCAAACTTTG-GCGAGAATGTTCGCACTTGCTATAGGCAA-GTTTTGGAAAATT----AAGTAC------ATACTTTCAATACAAAAGATCCTT-CAA-TTCGAACAATA-CCTGAATTT----A-AAA--AT-CA-------AGGGACAATCG-AG-AATGTCTC----CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAGAAAACAGGCAG-ATATGAAAGAGAAAATA-AATAGCCATGGTAAAAATGAAAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------TG-----TACCTC------A-GTTCAAC-AGA-AGG-ATG-ATT-A----CATTTTTTTACTTGAATGTCCA-CTATAAC--A----ACAAT-TTTAGAGGAGGAGTTTT----A-AAC-TGATTTT-T-TTAAAACCTATCCAAA-CCTAGCACTACTT-AC--ATGC-TGATCTG-TTA--ACATGGATT-----AGGT----CAAAATAA-A-CCCAGAGTTTACCATTCAATTTATGACAATTAC------TTAATT--TAGAATTCAA-TA--CAAGAAAACAAACA-ACTT-GTGGAATATAAAGTATTGTC------TAG-TATA-TTAGA-----A-AACA--A------AATTCCTT--ATGCAT--GTTCTACCATGCGC----AC---AT-TA------TCTTATTGTAACATGT-ATTTACAATATAGTATATTTTGAT-CGCTAA-CTCTCTGTTC-GCATGTCATGCAACTCAGTCGATT--A-ATTTCTCGTTTCGTTATCCTTTTGTTTATAAATTGATT-TTGG-ACCAC-TATGT-ATCA-TGACA-TGCGCC--T-ATGTGGG-CCAA--ATTGGTTGAATAAACTCATTTCT-ATTCTAT
gi|3 : caggATTATATA--GATATTCTAAAGCAAATATTTACATGTATGTACTGGTATAGACTAT--CTTTCATCTTCTAACTTTTTAAGGGCAGC--------------AAGTCTAACACCATT-ACTAGTGACTGGTATTGTAGTATTTTATTCTA-CAATGAAAAA---CTAACGTTACATATTGATT-TGTCCCTTTGCAAAACACTGAGTGAAAACAAATT-------T-AAATTGTATTTAAAAAG--GCAA---------------------------T-GGGAAAATATCCGTCCCTGTTATATGCAGGGTTTTGGAA---T------GTAT------CTACTTTCAGCACAAAAGATCATT-AAATTTTGCAAACTA-CCTGAATTT----A-AAA--AG-CC-------G-GGATAATCA-GGCAAT-TTTCA---CTAAATTC--AGAATTAGTAATCAT-TG-TCTACAGG----TAG-ATACAGACAG-ATATGAAAGA-AAAAT-TAATAACTATGGTAAAAATG-AAATTCTTCCCAGCTGGT------GTGAGAGACTTTG----TCAATA---CTGTACGTCATG-----TACCTC------AAGTTCAAC-AGA-A-G-ATGAATT-ACATGCA-TTCTTTAATAGAATGTCCA-CTAT-AC--A----ATAATATTTAGAGGA-GAGTTTTTGA-ATAA---GA---T-T-TTAAAACCTTTCCAAATCCTAACAATAtct
gi|4 : cAAA-TTTAAATTGTACATAAAACCCTGCA--CTACG-TAA-CAACTTTTTAAATTTTT-GGGAAAAT-------------ATATGCAAAGTTGTGGAAAATT----A--------------CTTT------------TCCTT-T------GAAAAATA-CCCGAATTT----ATAAATGAC-CATAAATCCA-AGATAATCG-GGTAAT-TCTCG---CTGAATTC--AGAATTAGCAATCAT-TG-CTTACGGG----TAG-AAACAAGCAG-ATATGAAAGA-AAAA-ATAATAACTATGGTAAAAATC-GAATTCTTCCAA---GGT------GTGAGAGAGTCTGTCGATCAATA---C---------TG-----TATCTCAAGTGAAAGTTCAAC-AGA-a
gi|4 : GAAAGTTCA-ACAG-AC--G----TTAAT-TCGGGGGGA-GAGTTTT--A-A-------A--TT-C-TT--------TCCAAA-CCATGCAATGC-TGAT-A------GATCTGTTTATTATATGGA-T-----ATGT----CATATGAACA-TTTCGAGTTTACTGTTCTA-CT------G-TAT------T--ATT-GTAACTTTCAA-TATTTAAGAAAAT-TACA-ACAT-GTGGAA------------------------TATATTTAGAC-TACACAACAT-ATAGACTAGTT-ACT--ATGCAT--GCACTA--GTG-GTTTTAAC---G-ATA------TACTA--GTATAGTGcgttaattcggggggagagttttaaattctttccaaaccatgcaatgctgatagatctgtttattatatggatatgtcatatgaacatttcgagtttactgttctactgtattattgtaactttcaatatttaagaaaattacaacatgtggaatatatttagactacacaacatatagactagttactatgcatgcactagtggttttaacgatatactagtatagtgaa
gi|5 : aaatttaaattgtacataaaaccctgcactacgtaacaactttttaaatttttgggaaaatatatgcaaagttgtggaaaattacttttcctttgaaaaatacccgaatttataaatgaccataaatccaagataatcgggtaattctcgctgaattcagaattagcaatcattgcttacgggtagaaacaagcagatatgaaagaaaaaataataactatggtaaaaatcgaattcttccaaggtgtgagagagtctgtcgatcaatactgtatctcaagtTC------AGGTTCAACTAGATA-GTATGAATTTA----CA-TTTTTTACTCGAATGTCCAGCTATCACCAA----ACAAT-TTTAAAGGA-GAGTTTT--TTA-AAC-ATA--TT-T-TTAAAACCTATCCAAA-C-TA-CACTACTTAACCAATGCCTGATCTG-TTA---CATGGATTTTACCATGTAGTGCAAATGAA-AACCCGGAGTAT---GTACAA------------AC------GTAATTTGTAAATCTCAA-TA--CAAGAAAAC-AACATACTTTGTTGA-TAT-AAGT-ATGTC------TAGTTATATTTAGACATGCA--ACATTA------AATT-CTTTTATGCATCTGTTCTA-CATGCGC----ATTATATATA------TACTATTGTATATT---TTATATAAGTTGGTAT-TTTTGATG-GCTAAACTCTCTGTTC-GCATGTCATGCAACTCAGT-AA-T--A-TTTTCTCT-TTTGTTATCC-TTTGTTTATG---TGATT-TGGGAA-CACTTATGCGATCATTG--A-TG--CC--T-ATGT-GGCCC-A--ATTAGTTGAATAAA--TATTTCT-ATTCTATaa
gi|6 : tAACCTACTAAGAGCAGCTTTCAAATGAG-GCAAGTCTAACACCACTAAACA-TGACTGGTATTCCAGTATTTTATTCTACCAGTGAAAAAAACCTG------CATATTGATTCTGACCTTTTGCAAAA-AC-TAGTGAAAACAAATT-C-------AAATTGTATATTAAAAA--GCAA-CTTCG-TAATTGTTTTCTCAAACTTTTGGGGAAAATGTTCGTACCTGC-ATATGCAGG---TTGGAAAATTAAGAAAGTAC------ATACTTTCAGCACAAAAGATCCCTGCAATTTCGAAAAATATCCTGAATTTTTAAA-AAA--AGCCA-------A-GGACAATCG-AGTAA--TCTCGCAACAAAATTCAAAGAATTAGTAATCAC-TGCTCTACGGGCGTTTA--AAACA-TCAGTATATTAAAAATAAAAcc
gi|7 : CTATATGCAAGGTTTTGGAAAATT----AAGTACCTGTACATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATA-AATAGCCATGGTAAAAATG-AAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAACA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--T-A-AACATGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGAAT-----AT
gi|8 : AAAACCTATCCAAA-CCTAGCACT--------------------G-T------ATGGATT-----ATGT----CAAATGAA-AACCCGGAGTTTACCGTTCAA-TTATGCCAA-TACATGTACTTAATT-GTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGTACAACAT-A------AATT-ATT--ATGCAT--GTTCTA-CATGCGC----AT---ATATATACATGTACTATTGTATAT--T-TTATATAA
gi|9 : --TT-T-TTAAAACCTTTCCAAA-GCTAGCATTACTTAGC-AATAC-GGATATG-TTA--ACATGGATT-----AGGT----CAAAAGAACA-TTATGAGGTTACCGTTCAA-TTATTCCAA-TAT------TTAATT-GTAAATTTCAA-TA--CAAGAAAAC-ACTATACTT-GTTGAATAT--AGTCATGTTTAAATGTAGTTATATTTAGAT-TG--CAACAT--------AATT-ATT--t
blockSeqs : . T CATGTA T T T TTTCAAATGAG A G C AAC ACGTTA TCT A C C T A CAAAT CT A T T T A G G T G AAGAAA CTGTAC T G T T TTAA T TG C TAAATCC G . T G CAA AA . C CGTT A G T G TA G A GCT ACACGG A TCGA CTGTACGTCATG AAGTGA A T T G T T CATG T G A ATATA A G TGAATAAG TT A G T A C A CCAA C T TTA TTACC AGTG CA A TTTATGACAAT ATGTAC T . TT A T T AA A TAAATG T T CTACAC ATAGACT CC TT CT C ATATATATACATG ATGT T A C A T . C TTCAT GT T AAT A GA C T G TT AC G TAT C A AT G CT T A
blockSeqs : . . . . . . TC T C C T A T . A A . . A . A T A AA . C . T . . . . . . . . C . . . . . . . G . T TT A . . . A . TAGCCGGCCCC . A . . . . . . . . C CAA . . TTAAACAT . . . . A T G CAA . T A . . AA C TTATGCCAA . . . . . T . A C . T T CATGCA TA A . . . TTTAACGATA TT G . G . T . . TTA T . . . G . . . TT . . TA C A . A . T .
blockSeqs : . . . TT A T . . . C . A T . . T . G T G AA . C . T . . . . . . . . T . . . . . . . A . . AT A . . . C . CTC . A . . . . . . . . . A . . TAAACATG . . . . G T A CAA . . A . . AA G TTATTCCAA . . . . . T . A C . T T CTGTAC A C . . . ATTATATATA TT . TA . . . . A . . . TT . . T C A . T . T .
blockSeqs : . . . . . . . . . G A . C . . . . . . . . . . T . . . . . . . G . . TA A . . . G . CTG . G . . . . . . . . . A . . AAAACT . . . . A T A AA . . A . . CA G CTG . . . . . . . . . . . T TTGC A A . . . ACATTA . . . . A . . . T . . T C A . C . T .
blockSeqs : . . . . . . . . . . . . . . . T . . . . . . . . . . A . . . A . CTG . G . . . . . . . . . G . . AAACTG . . . . A T A CA . . A . . A T . . . . . . . . . . . . . A . A . . . . G . . . T . . T C A . G . T .
blockSeqs : . . . . . . . . . CCG . . . . . . . . . . . A . . AA . . . . A . . TA . . . . . . . . G . . . T . . T C A . G . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . T . . . C . . A . . .
blockSeqs : . . . . . . . . .
blockSeqCons : A* TN* TAAACATG**** CAA* NA* A* CTNNAC* ATTAACATA***********
originalCons : ATTATATATTGATATNCTAAAGCAAATACTTACATGTATGTACTGGTATAGACTANAACNTTCANCTTCTAACCTACTAAGGGCAGCTTTCAA-TGAG-GCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGAAAAA---CTG------CATATTGATTCTGNCCCTTTGCAAAACACTTAGTGAAAACAAATT-CAAA-TT-AAATTGTATATAAAAAA--GCAA-CTTCG-TAA-TAATTTCTCAAACTTTT-GGGAAAATGTTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATATAATAGCCATGGTAAAAATG-AAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTT--A-A-AAC-TGA--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT----CAAATGAA-A-CCCGGAGTTTACCGTTCAA-TTATGCCAA-TAC------TTAATT-GTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGAC-TGCACAACAT-A------AATT-NTT--ATGCAT--GTTCTA-CATGCGC----AC---ATATA------TACTATTGTATANTGT-TTATATAANTTGGTAT-TTTTGATGCGCTAA-CTCTCTGTTC-GCATGTCATGCAACTCAGT-GA-T--A-ATTTCTC--TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A-CAC-TATGT-ATCATTG--A-TGCTCC--T-ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTTCT-ATTCTAT
finalCons : ATTATATATTGATATNCTAAAGCAAATACTTACATGTATGTACTGGTATAGACTANAACNTTCANCTTCTAACCTACTAAGGGCAGCTTTCAA-TGAG-GCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGAAAAA---CTG------CATATTGATTCTGNCCCTTTGCAAAACACTTAGTGAAAACAAATT-CAAA-TT-AAATTGTATATAAAAAA--GCAA-CTTCG-TAA-TAATTTCTCAAACTTTT-GGGAAAATGTTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------A-GGACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCAC-TG-TCTACGGG----TAG-AAACAGGCAG-ATATGAAAGA-AAAATN-AATAGCCATGGTAAAAATG-AAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGA-GAGTTTTTAAACATG----A--TT-T-TTAAAACCTATCCAAA-CCTAGCACTACTTAACAA-TGC-TGATCTG-TTA--ACATGGATT-----ATGT----CAAATGAANA-CCCGGAGTTTACCGTTCAA-TTATGCCAA-TAC------TTAATT-GTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATATA-AGTCATGTC------TAGTTATATTTAGACTNNAC-AACAT-A------AATT-NTT--ATGCAT--GTTCTA-CATGCGCATTAACATA-----------TACTATTGTATANTGT-TTATATAANTTGGTAT-TTTTGATGCGCTAA-CTCTCTGTTC-GCATGTCATGCAACTCAGT-GA-T--A-ATTTCTC--TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A-CAC-TATGT-ATCATTG--A-TGCTCC--T-ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTTCT-ATTCTAT
Alignments
lowQualScore : 11 222222 111 222222222222 1 1 111 222222 3333333333 11 1 111111 111111 1111 1111111 1 111 1111 1 111 111111 1111 33333333333333333333 111111 1111 1 1111111 11 1 11111 1111 11111111111 111111 111111 22222 33333333 11 44444444 1 11111 1 11 1 1 1 111111 11 11 1111
lowQualScore : 88 1 999999 999 1 1 333333333333 3 6 0 777 888888 999 1 6 2 3 3 2222222222 5 11 88 1 8 8 1 8 3 0 3 6 666666 999999 5 6 3 6 4444 6 77 5 8888888 5 5 7 1 000 99 6 6 4444 6 1 6 3 99 1 6 111 999999 2222 22222222222222222222 444444 5 5 5 5 5 0 5 2222 5 6 3 4444444 6 5 00 777 66 4 3 2 2 6666 5 0 0 777 0 22222 2222 1 5 6 9 44444444444 999999 6 6 99 6 7 6 99 6 999999 3 1 00000 33333333 1 99 11 8 77777777 8 6 0 33333 1 3 88 3 7 3 0 555555 99 0 5 888 5 55 5 5 5 22 66 5 0000 1 1 66 1 66 7 4
lowQualScore : .. . ...... ... . . ............ . . . ... ...... ... . . . . . .......... . .. .. . . . . . . . . . ...... ...... . . . . .... . .. . ....... . . . . ... .. . . .... . . . . .. . . ... ...... .... .................... ...... . . . . . . . .... . . . ....... . . .. ... .. . . . . .... . . . ... . ..... .... . . . . ........... ...... . . .. . . . .. . ...... . . ..... ........ . .. .. . ........ . . . ..... . . .. . . . . ...... .. . . ... . .. . . . .. .. . .... . . .. . .. . .
lowQualScore : 55 0 555555 555 0 0 000000000000 3 7 0 555 888888 000 0 5 5 2 2 5555555555 6 00 88 0 0 0 0 0 2 6 2 7 555555 222222 2 7 2 7 2222 7 99 7 6666666 7 7 1 4 000 22 7 7 2222 7 0 7 3 00 7 7 777 222222 1111 11111111111111111111 444444 4 0 0 7 7 1 7 1111 0 7 3 3333333 7 7 77 000 99 4 6 0 0 6666 0 1 0 000 4 55555 1111 7 7 6 3 77777777777 222222 7 7 22 7 3 7 88 7 222222 2 7 77777 22222222 0 22 00 0 66666666 0 0 8 88888 0 3 77 3 3 3 0 888888 00 8 0 888 0 22 0 0 0 66 99 0 3333 1 9 11 9 11 3 4
consensus : ATTATATATTGATATNCTAAAGCAAATACTTACATGTATGTACTGGTATAGACTANAACNTTCANCTTCTAACCTACTAAGGGCAGCTTTCAA-TGAG-GCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGAAAAA---CTG------CATATTGATTCTGNCCCTTTGCAAAACACTTAGTGAAAACAAATT-CAAA-TT-AAATTGTATATAAAAAA--GCAA-CTTCGT-AA-TAATTTCTCAAACTTTT-GGGAAAATGTTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------AGG-ACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCA-CTG-TCTACGGG----TAGAAA-CAGGCAG-ATATGAAAGA-AAAAT-TAATAGCCATGGTAAAAATGAAA-TTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGAGAGTTTTT-AAAC-ATGA--TTTT--TAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT----CAAATGA-AAACCCGGAGTTTACCGTTCAA-TTATGCCAA-TAC------TTAATT-GTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGACTA-ACAACAT-A------AATTNTT--ATGCAT--GTTCTA-CATGCGCAT-TAT--AC-ATTATACTATTGTATANTGT-TTATATAANTTGGTAT-TTTTGATGCGCTAA-CTCTCTGTTC-GCATGTCATGCAACTCAGT-GA-T--A-ATTTCTC--TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A-CAC-TATGT-ATCATTG--A-TGCTCC--T-ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTTCT-ATTCTAT
Reference ( family-609 ) : ATTATATATTGATATNCTAAAGCAAATACTTACATGTATGTACTGGTATAGACTANAACNTTCANCTTCTAACCTACTAAGGGCAGCTTTCAA-TGAG-GCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGAAAAA---CTG------CATATTGATTCTGNCCCTTTGCAAAACACTTAGTGAAAACAAATT-CAAA-TT-AAATTGTATATAAAAAA--GCAA-CTTCGT-AA-TAATTTCTCAAACTTTT-GGGAAAATGTTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------AGG-ACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCA-CTG-TCTACGGG----TAGAAA-CAGGCAG-ATATGAAAGA-AAAAT-NAATAGCCATGGTAAAAATGAAA-TTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGAGAGTTTTT-AAAC-ATGA--TTTT--TAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT----CAAATGA-ANACCCGGAGTTTACCGTTCAA-TTATGCCAA-TAC------TTAATT-GTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGACTNNACAACAT-A------AATTNTT--ATGCAT--GTTCTA-CATGCGCAT-TA---AC-A-TATACTATTGTATANTGT-TTATATAANTTGGTAT-TTTTGATGCGCTAA-CTCTCTGTTC-GCATGTCATGCAACTCAGT-GA-T--A-ATTTCTC--TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A-CAC-TATGT-ATCATTG--A-TGCTCC--T-ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTTCT-ATTCTAT
gi|1 : ATTATATATTGATATGCTAAAGCAAATACTTA------TGTACTGGTATAGACTAGAACATTCAACTTCTAACCTACTAAGGGCAGCTTTCAA-TGAGTGCAAGTCTAACACCACT-AACAGTGACTGGTATTCTAGTATTTTATTCTA-CAGTGGAAAA---CTA------CATATTGAT-CTGTCC-TTTGCAAAACACTTAGTGAAAACAAATTACAAAGTT-AAAT-GTATATAAAAAA--GCAATCTTCGT-AA-TAATTTCTCAAACTTTT-GGGAATAT-TTCGTACCTGCTATATGCAAGGTTTTGGAAAATT----AAGTAC------ATACTTTCAG-ACAAAAGATCCAT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------AGG-ACAATCGTAG--ATCTCTCG---CAAAATTC--AGAATTAGTAATCACCTG-TCT-TGGG----TAGAAA-CAGGCAG-ATATGAAAGA-AAAATATAATAGCCATGAT-AAAATGAAA-TTCTTCCTA---GAT------GTGAAAG-ATTTG----TCAATA---C---------TG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGAGAGTTTTA-AAAC--TGA--TTTT--TAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGATT-----ATGT-----AAATGA-A-ACCC-AAGTTTACCATTCAA-TTATGCTAA-TAC------TTAATT-GTAAATCTCAACTA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTAT-CTTAGACTA---AACAT-A------AATTCTT--ATGCAT--GTTCTA-CATGCGC--------AC-ATTATACTATTGTATAATGTATTACATATATTGATAT-TTTTGATGTGCTAA-CTCTC-GTTCAGCATGTCATGCAACTCCGT-GA-T--A-ATTTCTG--TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A--AA-TATGT-ATCA-TG--A-TGCTCC--C-ATGTGGG-CCAA--ATTGGTTGAATAAA--TATTGCT-ATTCTAT
gi|10 : -TTCTTT-CTAGAATGTTCA-CTGT-AC--ATATAGCAAT-TGTAGCGGGAAGTTA---AAACTATTA--TGTT---AAAACCCATCCAAA--ATAGTATT--CTAA--AATGC-TGA-CTATTTA--ACA-GGATG-----AT-T----CGAATGA-AGA
gi|11 : cAATTACTACGGTGAACGTGAAA-TTCTTCCTA---GATACACGGGTGAAAGAATCCC----TCAACATAGC---------CGGCCCCCACCTA------AAGTTCAAA-GGA-G-G-ATGGATT-A----TA-TTTtttattttttcgatattttataatcatgtaagatttagttg
gi|12 : ACTCAGT-GA-TTCATATTTCTC--T--GTTATCC-TTT-TTTATG---TGATT-TTG--A-CAC-CATAT-ATCATTT--AGTGCTCC----ATGTGGGCCC-A--AT--GTT-AATAAA--TATTCTTAATTCTAaattttttcta
gi|13 : --TTTGTTATCC-TTTGTTTATG---TGATT-TTGG-A-CAC---TGT-ATCA-TG--A-TGCTCCTAT-ATATGGGCCCAA--ATTGGTTGAATAAA--TA-TTCT-ATTCTATc
gi|14 : TATCC-TTTGTTTATG---TGATG-TTGA-A-CAC-TATGT-ATCAT-G--A-TGCTCC--T-CTGTGGGCCCAA--ATTAGTTGAATGAA--TATTTCT-ATTCTATa
gi|15 : cTATCT-TTTGTTTATG---TCATTATTGA-A-CAC-TATGT-ATAATTG--A-TGCTCC--TAATGTGGGCCCAAATATTTGTTGAATAAA---A-TTCT-ATTCTAtct
gi|16 : TATCA-TTTGTGTATG---TGATA-TTGG-A-CAC-TATGT-ATCAT-G--A-TGCTCC--T-ATGTGGGCCCAA--ATTCGTTGAATAAA--TA-TTCT-ATTATAT
gi|17 : TTG----TCAATA---C---------TC-----TA--------------TCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCttt
gi|18 : -ATGTGGGCCCAA--ATTGGTTGAATAAA--TATTT-T-ATTCTAT
gi|19 : A--AG-CA-------AGG-ACAATCG-AGTAAT-TCTCG---CAAA
gi|2 : TTTTATTCTA-CAGTGAAAAA---CTG------CATATTGACTC-GACCCGTTGCAAAACACTTAGTGAAAATAA-TT-CAAA-TT------GTATATAAAAAA--GCAA-CTTCGTTAA-TAATTTCTCAAACTTTG-GCGAGAATGTTCGCACTTGCTATAGGCAAG-TTTTGGAAAATT----AAGTAC------ATACTTTCAATACAAAAGATCCTT-CAATT-CGAACAATA-CCTGAATTT----A-AAA--AT-CA-------AGGGACAATCG-AG-AATGTCTC----CAAAATTC--AGAATTAGTAATCA-CTG-TCTACGGG----TAGAAAACAGGCAG-ATATGAAAGAGAAAAT-AAATAGCCATGGTAAAAATGAAAATTCTTCCTA---GAT------GTGAAAGAATTTG----TCAATA---C---------TG-----TACCTC------A-GTTCAAC-AGA-AGG-ATG-ATT-A----CATTTTTTTACTTGAATGTCCA-CTATAAC--A----ACAAT-TTTAGAGGAGGAGTTTT-AAAC--TGATTTTTT--TAAAACCTATCCAAA-CCTAGCACTACTT-AC--ATGC-TGATCTG-TTA--ACATGGATT-----AGGT----CAAA--ATAAACCCAGAGTTTACCATTCAATTTATGACAATTAC------TTAATT--TAGAATTCAA-TA--CAAGAAAACAAACA-ACTT-GTGGAATATAAAGTATTGTC------TAG-TATA-TTAGA--AAACAAAAT----------TCCTT--ATGCAT--GTTCTACCATGCGC--------AC-ATTATCTTATTGTAACATGT-ATTTACAATATAGTATATTTTGAT-CGCTAA-CTCTCTGTTC-GCATGTCATGCAACTCAGTCGATT--A-ATTTCTCGTTTCGTTATCCTTTTGTTTATAAATTGATT-TTGG-ACCAC-TATGT-ATCA-TGACA-TGCGCC--T-ATGTGGG-CCAA--ATTGGTTGAATAAACTCATTTCT-ATTCTAT
gi|3 : caggATTATATA--GATATTCTAAAGCAAATATTTACATGTATGTACTGGTATAGACTAT--CTTTCATCTTCTAACTTTTTAAGGGCAGC--------------AAGTCTAACACCATT-ACTAGTGACTGGTATTGTAGTATTTTATTCTA-CAATGAAAAA---CTAACGTTACATATTGATT-TGTCCCTTTGCAAAACACTGAGTGAAAACAAATT-------T-AAATTGTATTTAAAAAG--GCAA---------------------------T-GGGAAAATATCCGTCCCTGTTATATGCAGGGTTTTGGAA---T------GTAT------CTACTTTCAGCACAAAAGATCATT-AAATTTTGCAAACTA-CCTGAATTT----A-AAA--AG-CC-------GGG-ATAATCA-GGCAAT-TTTCA---CTAAATTC--AGAATTAGTAATCA-TTG-TCTACAGG----TAGATA-CAGACAG-ATATGAAAGA-AAAAT-TAATAACTATGGTAAAAATGAAA-TTCTTCCCAGCTGGT------GTGAGAGACTTTG----TCAATA---CTGTACGTCATG-----TACCTC------AAGTTCAAC-AGA-A-G-ATGAATT-ACATGCA-TTCTTTAATAGAATGTCCA-CTAT-AC--A----ATAATATTTAGAGGAGAGTTTTT-GAAT-AAGA---TTT--TAAAACCTTTCCAAATCCTAACAATAtct
gi|4 : cAAA-TTTAAATTGTACATAAAACCCTGCA--CTACGT-AA-CAACTTTTTAAATTTTT-GGGAAAAT-------------ATATGCAAAGTTGTGGAAAATT----A--------------CTTT------------TCCTT-T------GAAAAATA-CCCGAATTT----ATAAATGAC-CATAAATCCAAG-ATAATCG-GGTAAT-TCTCG---CTGAATTC--AGAATTAGCAATCA-TTG-CTTACGGG----TAGAAA-CAAGCAG-ATATGAAAGA-AAAAA-TAATAACTATGGTAAAAATCGAA-TTCTTCCAA---GGT------GTGAGAGAGTCTGTCGATCAATA---C---------TG-----TATCTCAAGTGAAAGTTCAAC-AGA-a
gi|4 : GA--GTTT--TAAATTCTTTCCAAA-CCATGCAATGC-TGAT-A------GATCTGTTTATTATATGGA-T-----ATGT----CATATGA-ACATTTCGAGTTTACTGTTCTA-CT------G-TAT------T--ATT-GTAACTTTCAA-TATTTAAGAAAAT-TACA-ACAT-GTGGAA------------------------TATATTTAGACTACACAACAT-ATAGACTAGTTACT--ATGCAT--GCACTA--GTG-GTTT-TA---ACGA-TATACTA--GTATAGTGcgttaattcggggggagagttttaaattctttccaaaccatgcaatgctgatagatctgtttattatatggatatgtcatatgaacatttcgagtttactgttctactgtattattgtaactttcaatatttaagaaaattacaacatgtggaatatatttagactacacaacatatagactagttactatgcatgcactagtggttttaacgatatactagtatagtgaa
gi|5 : aaatttaaattgtacataaaaccctgcactacgtaacaactttttaaatttttgggaaaatatatgcaaagttgtggaaaattacttttcctttgaaaaatacccgaatttataaatgaccataaatccaagataatcgggtaattctcgctgaattcagaattagcaatcattgcttacgggtagaaacaagcagatatgaaagaaaaaataataactatggtaaaaatcgaattcttccaaggtgtgagagagtctgtcgatcaatactgtatctcaagtgaaagttcaacagacgttaattcggggggaTC------AGGTTCAACTAGATA-GTATGAATTTA----CA-TTTTTTACTCGAATGTCCAGCTATCACCAA----ACAAT-TTTAAAGGAGAGTTTTTTAAAC-AT-A--TTTT--TAAAACCTATCCAAA-C-TA-CACTACTTAACCAATGCCTGATCTG-TTA---CATGGATTTTACCATGTAGTGCAAATGA-AAACCCGGAGTAT---GTACAA------------AC------GTAATTTGTAAATCTCAA-TA--CAAGAAAAC-AACATACTTTGTTGA-TAT-AAGT-ATGTC------TAGTTATATTTAGAC-ATGCAACATTA------AATTCTTTTATGCATCTGTTCTA-CATGCGCAT-TAT--AT-A-TATACTATTGTATATT---TTATATAAGTTGGTAT-TTTTGATG-GCTAAACTCTCTGTTC-GCATGTCATGCAACTCAGT-AA-T--A-TTTTCTCT-TTTGTTATCC-TTTGTTTATG---TGATT-TGGGAA-CACTTATGCGATCATTG--A-TG--CC--T-ATGT-GGCCC-A--ATTAGTTGAATAAA--TATTTCT-ATTCTATaa
gi|6 : tAACCTACTAAGAGCAGCTTTCAAATGAG-GCAAGTCTAACACCACTAAACA-TGACTGGTATTCCAGTATTTTATTCTACCAGTGAAAAAAACCTG------CATATTGATTCTGACCTTTTGCAAAA-AC-TAGTGAAAACAAATT-C-------AAATTGTATATTAAAAA--GCAA-CTTCGT-AATTGTTTTCTCAAACTTTTGGGGAAAATGTTCGTACCTGC-ATATGCAGG---TTGGAAAATTAAGAAAGTAC------ATACTTTCAGCACAAAAGATCCCTGCAATTTCGAAAAATATCCTGAATTTTTAAA-AAA--AGCCA-------AGG-ACAATCG-AGTAA--TCTCGCAACAAAATTCAAAGAATTAGTAATCA-CTGCTCTACGGGCGTTTA-AAA-CA-TCAGTATATTAAAAATAAAAcc
gi|7 : CTATATGCAAGGTTTTGGAAAATT----AAGTACCTGTACATACTTTCAGCACAAAAGATCCTT-CAATTTCGAAAAATA-CCTGAATTT----A-AAA--AG-CA-------AGG-ACAATCG-AGTAAT-TCTCG---CAAAATTC--AGAATTAGTAATCA-CTG-TCTACGGG----TAGAAA-CAGGCAG-ATATGAAAGA-AAAAT-AAATAGCCATGGTAAAAATGAAA-TTCTTCCTA---GAT------GTGAAAGAATTTG----TCAACA---C---------CG-----TACCTC------AGGTTCAAC-AGA-A-G-ATGAATT-A----CA-TTTTTTACTCGAATGTCCA-CTAT-AC--A----ACAAT-TTTAGAGGAGAGTTTTT-AAAC-ATGA--TTTT--TAAAACCTATCCAAA-CCTAGCACTACTTAAC-AATGC-TGATCTG-TTA--ACATGGAAT-----AT
gi|8 : AAAACCTATCCAAA-CCTAGCACT--------------------G-T------ATGGATT-----ATGT----CAAATGA-AAACCCGGAGTTTACCGTTCAA-TTATGCCAA-TACATGTACTTAATT-GTAAATCTCAA-TA--CAAGAAAAC-AACATACTT-GTTGAATAT-AAGTCATGTC------TAGTTATATTTAGACTGTACAACAT-A------AATTATT--ATGCAT--GTTCTA-CATGCGCATATATATAC-A-TGTACTATTGTATAT--T-TTATATAA
gi|9 : TT-AAAC-AAGA--TTTTTTTAAAACCTTTCCAAA-GCTAGCATTACTTAGC-AATAC-GGATATG-TTA--ACATGGATT-----AGGT----CAAAAGA-ACATTATGAGGTTACCGTTCAA-TTATTCCAA-TAT------TTAATT-GTAAATTTCAA-TA--CAAGAAAAC-ACTATACTT-GTTGAATAT--AGTCATGTTTAAATGTAGTTATATTTAGATTG--CAACAT--------AATTATT--t