lowQualScore : 2 2 1 1 11 1 11 1 11 11111111 11111 2222222222222222 11111 11 11 22 1111 1 11111
lowQualScore : 0 0 55 5 3 44 3 1 0 0 5 7 00 77 2 00 5 0 5 66 5 5 77777777 66 888 5 5 5 66 4 4 4 4 11111 9999999999999999 777 88 3 3 3 3 1 7 3 3 55 666 99999 8 4 66 8 66 4 66 99 6666 777 66 22 4 8 55 77 0 4 4 4 6 1111 0 9999 4 11111 66 0 66
lowQualScore : . . .. . . .. . . . . . . .. .. . .. . . . .. . . ........ .. ... . . . .. . . . . ..... ................ ... .. . . . . . . . . .. ... ..... . . .. . .. . .. .. .... ... .. .. . . .. .. . . . . . .... . .... . ..... .. . ..
lowQualScore : 0 0 55 5 3 00 7 0 8 7 7 6 77 99 0 00 7 7 0 99 0 0 66666666 99 888 0 0 0 99 4 4 4 4 11111 4444444444444444 888 66 6 6 6 6 2 3 6 6 00 444 11111 9 4 11 9 11 4 11 99 9999 000 11 99 4 9 33 33 8 0 0 0 7 8888 8 4444 4 11111 11 4 99
consensus : CGTACACAACANNATTATCTTT-AAA-TANTTTGAATAAGAGCT-CTGGA-NCTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-C-A--AAAGATG---CTTA----TGGC-A-TT--CCGA-CAGT--GCA-A--CGAC-TG--C-TTA-TTTT--GAGAA-CATA-AGC-TTTATT-GGAGC-ATATAA-AAT-C-AAATATACG--NTCCTCTGGTTTCT----C-CCAA-----TG--TTAAA--TCCCCA
Reference ( gi|6 ) : CGTA-ACAA-AGTATTATCTTT-AAA-CAGTTTTAATAAGAGCT-CTGAA-TCTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-C-A--AAAGATG---CTTT----TGGC-A-TT--CCGA-CAGT--GCA-A--CGATGTG--C-TTG-TTTT--GAGAA-TATA-AGC-TTTATT-GGAGCTATATAA-AAT-C-AAATCTACA--ATCCTCTGGCTTCT----C-CCAA-----TG--TTAAA--TCCCCA
gi|3 : CGTACACAACAGTAT-ATCTTT-AAAACAATTTAAATAACAGCT-CTGGA-TCTTATCAAA-GAACAAAAATCATA-TCCAAAC-ATAT--ACTG-TTT-----------TCATTCAGCCTCTA-AAG-ATAAAT--C--AGAGG-TG----G-G-----AAAAA----------------TGCCTGCCCAT--CTTT-C-ATGCT-TATATTA-AGC-AT-T-C--AAAGATG---CTCT----TTGCTA-TT--CCGACCAGTCGGCA-A--CGAT-TG--CATTG--TGT--GAAAACCATA-AGCATTTAAT-GCAGC-AT---A-AAT-C-AAATCTACA--A-CCTC-GGTCTCT----C-CCAA------GATTTAAA--TTCCC
gi|1 : gcttggattcatttaattctaatgttttgcactgaaagtagA-ACAA-ATGATTATCTTTCAAA-TGGTTTAAATCAAATCT-CTGTA-ACTT--TACAAGAACAAAAGTAAT----TAAAG-ATTTGGACTA-TTTT-T--ATAGGTTCA-T--ACC---AGCAGAAAAAAT-GCTAAGG-G-TG-TTTATGTTTATGAAAA----------------CA---ATGCATA-ATGT-GGGTA-T-CAT-CT-TAAG-AT-C-A--TATGATG---CACA----TGGT-T-AT--CCTA-CAAT--GCA-ACCCGGCATGACT-TTA-TTTT--CAGAA-AATA-ATCATTCAT---GAGCAAAACAATAAT-C-Acta
gi|7 : cttgggaatcattataagttcatacgttactttgaaaaatcgcgcaattttcaataaattatggatcttttataattgattttttgcattaccaaaatgccaTTA-AAA-TACTTTGAATAAGA-TT-CTGGA-G-TT--CAAA-GAACAAA-GTTATAACCCAAAA-GTTG--ACTG-TTTT-TTAG-----TCATT--GCC---A-CAG-ATAAGTTGC--AGA-GGTGGTTTG-G-----GAGGAGGGAGAGGGGGAGGGGTG---GTGCAT--CTTTGCGATG-T-TAT-TTGTTGC-AT-CAA--AAAGATG---CTTA----T-GC-A-TTGGCCGAGCAGT--GC--A--CGACGTT--G-TTA-TTTT--GA-AA-CATA-AGC-TTTATT-GAAGC--TATAA-GAT-C-AAATACACG--GTTCTCTGGTTTCT----CGCCAA-----TG--TTgtg
gi|4 : TTTGAATAAGAGCT-CTGGA-TCTT--CAAAAAGA-AAAAATTATA-TCC-AAA-GTTT--ACTGTTTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----G-AAA----------------TG-----GCAT--CTTT-CGATG-T-TA--TTGTAGCAAT-C-A--TAAGATG---CTTTC---TGGC-A-TT--CCGA-CAGT--GCA-A--CGA--TG--C-TTG--TTT--GAGAA-CATAGAGC-TTTATTCGGAGCT-TAT-A-AAT-C-AAATCTAAAACATCCTCTG--TTTC----C-CCAA-----TG--TT-AA--TCCCCAt
gi|2 : TTTA-TAAGAGCTTCTGGAGTCTT--CAAAAGAACAA--GTTATA-TCCAAAA-GGTT--ACCG-TTTT-T--G-----TCATT--GC----------ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCATTCTTTT-CGATG-TATAT-TTGTAGCAATGC-AATAAAGA------TTTACGGTGGCAA-CT--TCGA-CAGT--GCACA--CGGT-TG--C-TTG-TTTTAAGAGAA-CATA-AGC--TTATT-GGAGCTAT-TAT-AAT-CTAAATCTACA--ATCCT-TGG-TTCTATTCC-CCAAAATTTTG--TTTAATTTCCCCtaggaatagtttggatccgacgtgacggaatacgtggatcctnnnnnnnnnnnnnnnnnnnnnnnnnaannnnnnnnnnn
gi|8 : TAAGAGCT-CTGGA-GCTT--CAAAAGAACAAACTTTATA-TGAAAAA-GTTT--ACAG-TTTTTT--G-----TCATT--GTC---A-CAG-ATAAGT-GC--AAG-A-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-C-A--AAAGATG---CTTA----TGGC-A-TT--CCGA-CAGT--ACA-A--AAATTTG--C-TTA-TTTT--GAGAA-CATA-TGC-TTTATT-AGAGC--TATAA-AAT-C-AAGCATACA--TTTTTCTAGTTTCT----C-CCAA-----TG--TTAAA--TCCCCAccccccataagaatagttggatccgacgtgaccggaaatagtggatccctagtaacgattgtgtcacagtgatataaggtacgc
gi|9 : TAAGAGCT-CTGGA-GCTT--CAAA-GAACAAACTTTATA-TGAAAAAAGTTT--ACAG-TTTT-T--T-----GCATT--GTC---A-CAG-ATA-GT-GC--AAG-A-TG-GT-G-G-----GAAAA-----------------G---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-C-A--AAAGATG---CTTA----TGGC-ATTT--CCGA-CAGT--ACA-A--AAATTTG--C-TTATTTTT--GAGAA-CATA-TGC-TTTATT-AGAGC--TATAA-AAT-C-AAGCATAC---ATTTTCTAGTTTTT----C-CCAA-----TG--TTAAA--TCCCCAtaaggaatagttggat
gi|17 : AAA-ATTT--AATG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-taaggaatagttggat
gi|11 : C--AGA-G-TG-TTTG-G-----GATAA----------------TG---GTGCAT--CTTT-CAATG-T-TAT-TTGTAGT-AT-T-A--ACAGATA---GTTA----TGGC-A-TT--CCGA-CAGT--GCA-A--CGACTTG--C-TTA-TTTT--GAGAA-CATT-TGC-TTTATT-AGAG--GTATAA-AAT-C-AAATATACA--TTCTTCTGGTTTTT----C-CCAA-----TG--TTAAA--
gi|5 : -G-TG-TTTA-T-----CAAAA----------------TG---GTGCCT--CGTT-GGGTA-T-CAT-CTTAAGA-AT-C-A--ACAGATG---CATA----TGAC-A-TT--CCAA-TAGT--TCA-G--TGACCAA--T-TTA-TTTT---AGAA-AATA-AGC-ATTAAT-TGAACAAGAAAA-AATGC-AAtnnnnnnnnnnnnnnnnnnnnnnnnnacgtgtgagagagaattagtttggatc
gi|8 : cctggggatcattgtgtcctactttactttaaaaaatcgcgtaattttcaataccaaggatattttcaagaaagcgtttacattacagaatgtaataaacccttctctttcaaattgtcttaagatttgaaatcttcatcatacttgcaaaaatgtgtttgGCAT--CTTT-TGATG-C-TAC-AAATAAC-AT-C-G--AAAGATG---Ctattc
gi|9 : taagagctctggagcttcaaaagaacaaactttatatgaaaaagtttacagttttttgtcattgtcacagataagtgcaagatgtttgggaaaatggtGCAT--CTTT-TGATG-C-TAC-AAATAAC-AT-C-G--AAAGATGCACCTTT----Tttatggcattccgacagtacaaaaatttgcttattttgagaacatatgctttattagagctataaaatcaagcatacatttttctagtttctcccaatgttaaatccccataaggaatagttggat
gi|12 : taagagctctggagcttcaaagaacaaactttatatgaaaaaagtttacagttttttgcattgtcacagatagtgcaagatggtgggTATGA-AAT-C-AAATACACG--TTCCTCTGGTTTCT----T-CCAA-----TG--TTAAA--TCCCCAttatggcatttccgacagtacaaaaatttgcttatttttgagaacatatgctttattagagctataaaatcaagcatacattttctagtttttcccaatgttaaatccccataaggaatagttggat
gi|16 : agcAATACACG--TTTCTCTGGTTTCT----C-CCAA-----TG--TGAAA--TCtaaggaatagttggatccgacgtgacggaatagttggatcagagtaacgatgtgtcgcggt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ATTCCGAAAACACTTTCGCTTTATAAATATATTGAGATAACAAATATGCACCTGTTTATAATTAGAGCTATGGAAAAATCAAATAAGCGACAGTGAACGTTCCTCTGGTGTTCCTGTTGCCTCCCAAAATGATAAAATCCCCCATAAGGAATAGTTATGGATCCGACGTGAGAAACGGCGAGAAGTAGTGCAGTGGATCAAGAGTAAGGAATGTTGTC
Unaligned ( gi|13 ): AAAAAATATTGGATCTTGAACGTGATGGAATAGTTGGATCATAGCAACGATGTCACAGTG
Unaligned ( gi|14 ): AAAAAGTTTGCGATTCCGACATTGACGGAATAGTAGTCATCATCAGTAACGATGTGT
Unaligned ( gi|15 ): CGATGTGACGGAATAGTTGGATCACAGTAAGGATGTGTCACGGTGAA
Alignments
lowQualScore : 1 2 1 1 11111111 11111 2222222222222222 1111111 2222 22222 22 111111111111 11111111
lowQualScore : 5 3 22 7 0 0 1 1 5 66 66 9 66 5 4 66 4 4 44444444 66 777 4 4 4 66 4 4 4 4 00000 6666666666666666 777 99 4 4 4 4 8 4 55 4 4 777 8 4 55 8 55 4 3333333 4444 4 3 55 55 666 55 44 00000 666 3 22 3 666 3 777777777777 77 3 666 33333333 3 55 99999 88 55
lowQualScore : . . .. . . . . . . .. .. . .. . . .. . . ........ .. ... . . . .. . . . . ..... ................ ... .. . . . . . . .. . . ... . . .. . .. . ....... .... . . .. .. ... .. .. ..... ... . .. . ... . ............ .. . ... ........ . .. ..... .. ..
lowQualScore : 0 3 00 3 0 0 0 4 0 00 99 4 44 0 4 11 4 4 66666666 11 888 4 4 4 11 0 0 0 0 00000 5555555555555555 000 55 0 0 0 0 0 0 55 0 0 000 0 0 55 0 55 0 0000000 5555 0 6 00 00 444 00 11 00000 444 6 22 6 444 6 222222222222 44 6 444 22222222 6 00 11111 66 55
consensus : CGTACACAA-AGTATTATCTTT-AAA-CAGTTTGAATAAGAGCT-CTGGAG-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-C--T-GCTTA-TTTT--GAGA--A---CA--TA-AGC-----TTTAT---T-GGAGC--TA-T---AAAATC-AAATA--------T---ACGNTCCTCTGGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCA
Reference ( family-6 ) : CGTACACAACANNATTATCTTT-AAA-TANTTTGAATAAGAGCT-CTGGAN-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-C--T-GCTTA-TTTT--GAGA--A---CA--TA-AGC-----TTTAT---T-GGAGC-ATA-T---AAAATC-AAATA--------T---ACGNTCCTCTGGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCA
gi|1 : ACAA-ATGATTATCTTTCAAA-TGGTTTAAATCAAATCT-CTGTAA-CTT--TACAAGAACAAAAGTAAT----TAAAG-ATTTGGACTA-TTTT-T--ATAGGTTCA-T--ACC---AGCAGAAAAAAT-GCTAAGG-G-TG-TTTATGTTTATGAAAA----------------CA---ATGCATA-ATGT-GGGTA-T-CAT-CT-TAAG-AT-CA--TAT-GATGC-ACA---TGGT-T-AT--CCTA-CAAT--GCA-ACCCGGCATGA-C--T---TTA-TTTT--CAGA--A---AA--TA-ATCA----TTCAT------GAGC-A
gi|10 : cttgggaatcattataagttcatacgttactttgaaaaatcgcgcaattttcaataaattatggatcttttataattgattttttgcattaccaaaatgccaaTA-TATT--GAGATAA---CAAATA-TGCACCTGTTTATAATT-AGAGC--TA-TGGAAAAATC-AAATAAGCGACAGTGA-ACGTTCCTCTGGTGT---TCCTGTTGCCTC-CCAAAA-----TGA-TAAAA--TCCCCaaacaataatcagtg
gi|11 : attccgaaaacactttcgctttataaaC--AGA-G-TG-TTTG-G-----GATAA----------------TG---GTGCAT--CTTT-CAATG-T-TAT-TTGTAGT-AT-TA--ACA-GATAG-TTA---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-CT-T-GCTTA-TTTT--GAGA--A---CA--TT-TGC-----TTTAT---T-AGAG--GTA-T---AAAATC-AAATA--------T---ACATTCTTCTGGT-T---T--------TTC-CC--AA-----TG--TTAAA--cataaggaatagttatggatccgacgtgagaaacggcgagaagtagtgcagtggatcaagagtaaggaatgttgtc
gi|12 : AGC--TA-T---GAAATC-AAATA--------C---ACGTTCCTCTGGT-T---T--------CTT-CC--AA-----TG--TTAAA--TCCCCAtnnnnnnnnnnnnnnnnnnnnnnnnnacgtgtgagagagaattagtttggatc
gi|16 : AATA--------C---ACGTTTCTCTGGT-T---T--------CTC-CC--AA-----TG--TGAAA--TCtaaggaatagttggatccgacgtgacggaatagttggatcagagtaacgatgtgtcgcggt
gi|17 : AAA-ATTT--AATG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-
gi|2 : ATAAGAGCTTCTGGAGTCTT--CAAAAGAACAA--GTTATA-TCCAAAA-GGTT--ACCG-TTTT-T--G-----TCATT--GC----------ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCATTCTTTT-CGATG-TATAT-TTGTAGCAATGCAATAAA-GAT---TTACGGTGGCAA-CT--TCGA-CAGT--GCACAC-------GG-T--T-GCTTG-TTTTAAGAGA--A---CA--TA-AGC------TTAT---T-GGAGC--TATT---ATAATCTAAATC--------T---ACAATCCT-TGGT-TCTAT--------TCC-CC--AAAATTTTG--TTTAATTTCCCC
gi|3 : tttCGTACACAACAGTAT-ATCTTT-AAAACAATTTAAATAACAGCT-CTGGAT-CTTATCAAA-GAACAAAAATCATA-TCCAAAC-ATAT--ACTG-TTT-----------TCATTCAGCCTCTA-AAG-ATAAAT--C--AGAGG-TG----G-G-----AAAAA----------------TGCCTGCCCAT--CTTT-C-ATGCT-TATATTA-AGC-AT-TC--AAA-GATGC-TCT---TTGCTA-TT--CCGACCAGTCGGCA-AC-------GA-T--T-GC--A-TTGT--GTGA--AAACCA--TA-AGCA----TTTAA---T-GCAGC-AT-------AAATC-AAATC--------T---ACAA-CCTC-GGT-C---T--------CTC-CC--AA------GATTTAAA--TTCCCccccccataagaatagttggatccgacgtgaccggaaatagtggatccctagtaacgattgtgtcacagtgatataaggtacgc
gi|4 : gcttggattcatttaattctaatgttttgcactgaaagtagTTTGAATAAGAGCT-CTGGAT-CTT--CAAAAAGA-AAAAATTATA-TCC-AAA-GTTT--ACTGTTTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----G-AAA----------------TG-----GCAT--CTTT-CGATG-T-TA--TTGTAGCAAT-CA--TAA-GATGCTTTC---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA----T-GCTTG--TTT--GAGA--A---CA--TAGAGC-----TTTAT---TCGGAGC-TTA-T----AAATC-AAATC--------TAAAAC-ATCCTCT-GT-T---T--------C-C-CC--AA-----TG--TT-AA--TCCCCActa
gi|5 : -G-TG-TTTA-T-----CAAAA----------------TG---GTGCCT--CGTT-GGGTA-T-CAT-CTTAAGA-AT-CA--ACA-GATGC-ATA---TGAC-A-TT--CCAA-TAGT--TCA-GT-------GA-C--CAATTTA-TTTT---AGA--A---AA--TA-AGCA----TTAAT---T-GAACA-AGA-A---AAAATG-CAATA--------T---taggaatagtttggatccgacgtgacggaatacgtggatcctnnnnnnnnnnnnnnnnnnnnnnnnnaannnnnnnnnnn
gi|6 : cctggggatcattgtgtcctactttactttaaaaaatcgcgtaattttcaataccaaggatattttcaagaaagcgtttacattacagaatgtaataaacccttctctttcaaattgtcttaagatttgaaatcttcatcatacttgcaaaaatgtgtttgCGTA-ACAA-AGTATTATCTTT-AAA-CAGTTTTAATAAGAGCT-CTGAAT-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTT---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-TG-T-GCTTG-TTTT--GAGA--A---TA--TA-AGC-----TTTAT---T-GGAGCTATA-T---AAAATC-AAATC--------T---ACAATCCTCTGGC-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCAtc
gi|7 : TTA-AAA-TACTTTGAATAAGA-TT-CTGGAG--TT--CAAA-GAACAAA-GTTATAACCCAAAA-GTTG--ACTG-TTTT-TTAG-----TCATT--GCC---A-CAG-ATAAGTTGC--AGA-GGTGGTTTG-G-----GAGGAGGGAGAGGGGGAGGGGTG---GTGCAT--CTTTGCGATG-T-TAT-TTGTTGC-AT-CA--AAAAGATGC-TTA---T-GC-A-TTGGCCGAGCAGT--GC--AC-------GA-CGTT-G-TTA-TTTT--GA-A--A---CA--TA-AGC-----TTTAT---T-GAAGC--TA-T---AAGATC-AAATA--------C---ACGGTTCTCTGGT-T---T--------CTCGCC--AA-----TG--TT
gi|8 : TAAGAGCT-CTGGAG-CTT--CAAAAGAACAAACTTTATA-TGAAAAA-GTTT--ACAG-TTTTTT--G-----TCATT--GTC---A-CAG-ATAAGT-GC--AAG-A-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--ACA-AA-------AATT--T-GCTTA-TTTT--GAGA--A---CA--TA-TGC-----TTTAT---T-AGAGC--TA-T---AAAATC-AAGCA--------T---ACATTTTTCTAGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCAt
gi|9 : TAAGAGCT-CTGGAG-CTT--CAAA-GAACAAACTTTATA-TGAAAAAAGTTT--ACAG-TTTT-T--T-----GCATT--GTC---A-CAG-ATA-GT-GC--AAG-A-TG-GT-G-G-----GAAAA-----------------G---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-ATTT--CCGA-CAGT--ACA-AA-------AATT--T-GCTTATTTTT--GAGA--A---CA--TA-TGC-----TTTAT---T-AGAGC--TA-T---AAAATC-AAGCA--------T---AC-ATTTTCTAGT-T---T--------TTC-CC--AA-----TG--TTAAA--TCCCCAtaaggaatagttggat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAAATATTGGATCTTGAACGTGATGGAATAGTTGGATCATAGCAACGATGTCACAGTG
Unaligned ( gi|14 ): AAAAAGTTTGCGATTCCGACATTGACGGAATAGTAGTCATCATCAGTAACGATGTGT
Unaligned ( gi|15 ): CGATGTGACGGAATAGTTGGATCACAGTAAGGATGTGTCACGGTGAA
Alignments
lowQualScore : 1 1 1 1 11111111 11111 2222222222222222 1111111 2222 11111 111111111111 11111111
lowQualScore : 5 3 7 0 0 0 1 5 66 66 9 66 5 4 66 4 4 44444444 66 777 4 4 4 66 4 4 4 4 00000 6666666666666666 777 99 4 4 4 4 8 4 55 4 4 777 8 4 55 8 55 4 3333333 4444 4 3 55 55 666 55 44 66666 666 44 777777777 3 3 999999999999 77 3 666 33333333 3 55 99999 88 55
lowQualScore : . . . . . . . . .. .. . .. . . .. . . ........ .. ... . . . .. . . . . ..... ................ ... .. . . . . . . .. . . ... . . .. . .. . ....... .... . . .. .. ... .. .. ..... ... .. ......... . . ............ .. . ... ........ . .. ..... .. ..
lowQualScore : 0 3 3 0 0 2 4 0 44 99 4 44 0 4 11 4 4 66666666 11 888 4 4 4 11 0 0 0 0 00000 5555555555555555 000 55 0 0 0 0 0 0 55 0 0 000 0 0 55 0 55 0 0000000 5555 0 6 00 00 444 00 11 44444 444 00 222222222 3 6 666666666666 44 6 444 22222222 6 00 11111 66 55
consensus : CGTACACAA-AGTATTATCTTT-AAA-CAGTTTGAATAAGAGCT-CTGGAG-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-C--T-GCTTA-TTTT--GAGA--A---CA--TA-AGC-----TTTAT---T-GGAGC--TA-T---A-AAATC-AAATA--------T---ACGNTCCTCTGGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCA
Reference ( family-6 ) : CGTACACAA-AGTATTATCTTT-AAA-CAGTTTGAATAAGAGCT-CTGGAG-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-C--T-GCTTA-TTTT--GAGA--A---CA--TA-AGC-----TTTAT---T-GGAGC--TA-T---A-AAATC-AAATA--------T---ACGNTCCTCTGGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCA
gi|1 : ACAA-ATGATTATCTTTCAAA-TGGTTTAAATCAAATCT-CTGTAA-CTT--TACAAGAACAAAAGTAAT----TAAAG-ATTTGGACTA-TTTT-T--ATAGGTTCA-T--ACC---AGCAGAAAAAAT-GCTAAGG-G-TG-TTTATGTTTATGAAAA----------------CA---ATGCATA-ATGT-GGGTA-T-CAT-CT-TAAG-AT-CA--TAT-GATGC-ACA---TGGT-T-AT--CCTA-CAAT--GCA-ACCCGGCATGA-C--T---TTA-TTTT--CAGA--A---AA--TA-ATCA----TTCAT------GAGC---------A-AAA-C-AA
gi|10 : cttgggaatcattataagttcatacgttactttgaaaaatcgcgcaattttcaataaattatggatcttttataattgattttttgcattaccaaaatgccaaTA-TATT--GAGATAA---CAAATA-TGCACCTGTTTATAATT-AGAGC--TA-TGGAA-AAATC-AAATAAGCGACAGTGA-ACGTTCCTCTGGTGT---TCCTGTTGCCTC-CCAAAA-----TGA-TAAAA--TCCCCtaatcagtg
gi|11 : attccgaaaacactttcgctttataaaC--AGA-G-TG-TTTG-G-----GATAA----------------TG---GTGCAT--CTTT-CAATG-T-TAT-TTGTAGT-AT-TA--ACA-GATAG-TTA---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-CT-T-GCTTA-TTTT--GAGA--A---CA--TT-TGC-----TTTAT---T-AGAGG--TA-T---A-AAATC-AAATA--------T---ACATTCTTCTGGT-T---T--------TTC-CC--AA-----TG--TTAAA--cataaggaatagttatggatccgacgtgagaaacggcgagaagtagtgcagtggatcaagagtaaggaatgttgtc
gi|12 : AGC--TA-T---G-AAATC-AAATA--------C---ACGTTCCTCTGGT-T---T--------CTT-CC--AA-----TG--TTAAA--TCCCCAtnnnnnnnnnnnnnnnnnnnnnnnnnacgtgtgagagagaattagtttggatc
gi|16 : AATA--------C---ACGTTTCTCTGGT-T---T--------CTC-CC--AA-----TG--TGAAA--TCtaaggaatagttggatccgacgtgacggaatagttggatcagagtaacgatgtgtcgcggt
gi|17 : AAA-ATTT--AATG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-
gi|2 : ATAAGAGCTTCTGGAGTCTT--CAAAAGAACAA--GTTATA-TCCAAAA-GGTT--ACCG-TTTT-T--G-----TCATT--GC----------ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCATTCTTTT-CGATG-TATAT-TTGTAGCAATGCAATAAA-GAT---TTACGGTGGCAA-CT--TCGA-CAGT--GCACAC-------GG-T--T-GCTTG-TTTTAAGAGA--A---CA--TA-AGC------TTAT---T-GGAGC--TATT---A-TAATCTAAATC--------T---ACAATCCT-TGGT-TCTAT--------TCC-CC--AAAATTTTG--TTTAATTTCCCC
gi|3 : tttCGTACACAACAGTAT-ATCTTT-AAAACAATTTAAATAACAGCT-CTGGAT-CTTATCAAA-GAACAAAAATCATA-TCCAAAC-ATAT--ACTG-TTT-----------TCATTCAGCCTCTA-AAG-ATAAAT--C--AGAGG-TG----G-G-----AAAAA----------------TGCCTGCCCAT--CTTT-C-ATGCT-TATATTA-AGC-AT-TC--AAA-GATGC-TCT---TTGCTA-TT--CCGACCAGTCGGCA-AC-------GA-T--T-GC--A-TTGT--GTGA--AAACCA--TA-AGCA----TTTAA---T-GCAGC---A-T-----AAATC-AAATC--------T---ACAA-CCTC-GGT-C---T--------CTC-CC--AA------GATTTAAA--TTCCCccccccataagaatagttggatccgacgtgaccggaaatagtggatccctagtaacgattgtgtcacagtgatataaggtacgc
gi|4 : gcttggattcatttaattctaatgttttgcactgaaagtagTTTGAATAAGAGCT-CTGGAT-CTT--CAAAAAGA-AAAAATTATA-TCC-AAA-GTTT--ACTGTTTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----G-AAA----------------TG-----GCAT--CTTT-CGATG-T-TA--TTGTAGCAAT-CA--TAA-GATGCTTTC---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA----T-GCTTG--TTT--GAGA--A---CA--TAGAGC-----TTTAT---TCGGAGC--T--T---ATAAATC-AAATC--------TAAAAC-ATCCTCT-GT-T---T--------C-C-CC--AA-----TG--TT-AA--TCCCCActa
gi|5 : -G-TG-TTTA-T-----CAAAA----------------TG---GTGCCT--CGTT-GGGTA-T-CAT-CTTAAGA-AT-CA--ACA-GATGC-ATA---TGAC-A-TT--CCAA-TAGT--TCA-GT-------GA-C--CAATTTA-TTTT---AGA--A---AA--TA-AGC-----ATTAA---T-TGAAC--AA-G---A-AAAtaggaatagtttggatccgacgtgacggaatacgtggatcctnnnnnnnnnnnnnnnnnnnnnnnnnaannnnnnnnnnn
gi|6 : cctggggatcattgtgtcctactttactttaaaaaatcgcgtaattttcaataccaaggatattttcaagaaagcgtttacattacagaatgtaataaacccttctctttcaaattgtcttaagatttgaaatcttcatcatacttgcaaaaatgtgtttgCGTA-ACAA-AGTATTATCTTT-AAA-CAGTTTTAATAAGAGCT-CTGAAT-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTT---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-TG-T-GCTTG-TTTT--GAGA--A---TA--TA-AGC-----TTTAT---T-GGAGCTATA-T---A-AAATC-AAATC--------T---ACAATCCTCTGGC-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCAaatgcaatattc
gi|7 : TTA-AAA-TACTTTGAATAAGA-TT-CTGGAG--TT--CAAA-GAACAAA-GTTATAACCCAAAA-GTTG--ACTG-TTTT-TTAG-----TCATT--GCC---A-CAG-ATAAGTTGC--AGA-GGTGGTTTG-G-----GAGGAGGGAGAGGGGGAGGGGTG---GTGCAT--CTTTGCGATG-T-TAT-TTGTTGC-AT-CA--AAAAGATGC-TTA---TG-C-A-TTGGCCGAGCAGT--GCA--C-------GA-CGTT-G-TTA-TTTT--GA-A--A---CA--TA-AGC-----TTTAT---T-GAAGC--TA-T---A-AGATC-AAATA--------C---ACGGTTCTCTGGT-T---T--------CTCGCC--AA-----TG--TT
gi|8 : TAAGAGCT-CTGGAG-CTT--CAAAAGAACAAACTTTATA-TGAAAAA-GTTT--ACAG-TTTTTT--G-----TCATT--GTC---A-CAG-ATAAGT-GC--AAG-A-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--ACA-AA-------AATT--T-GCTTA-TTTT--GAGA--A---CA--TA-TGC-----TTTAT---T-AGAGC--TA-T---A-AAATC-AAGCA--------T---ACATTTTTCTAGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCAt
gi|9 : TAAGAGCT-CTGGAG-CTT--CAAA-GAACAAACTTTATA-TGAAAAAAGTTT--ACAG-TTTT-T--T-----GCATT--GTC---A-CAG-ATA-GT-GC--AAG-A-TG-GT-G-G-----GAAAA-----------------G---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-ATTT--CCGA-CAGT--ACA-AA-------AATT--T-GCTTATTTTT--GAGA--A---CA--TA-TGC-----TTTAT---T-AGAGC--TA-T---A-AAATC-AAGCA--------T---AC-ATTTTCTAGT-T---T--------TTC-CC--AA-----TG--TTAAA--TCCCCAtaaggaatagttggat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAAATATTGGATCTTGAACGTGATGGAATAGTTGGATCATAGCAACGATGTCACAGTG
Unaligned ( gi|14 ): AAAAAGTTTGCGATTCCGACATTGACGGAATAGTAGTCATCATCAGTAACGATGTGT
Unaligned ( gi|15 ): CGATGTGACGGAATAGTTGGATCACAGTAAGGATGTGTCACGGTGAA
Alignments
lowQualScore : 1 1 1 1 11111111 11111 2222222222222222 1111111 2222 11111 111111111111 11111111
lowQualScore : 5 3 7 0 0 0 1 5 66 66 9 66 5 4 66 4 4 44444444 66 777 4 4 4 66 4 4 4 4 00000 6666666666666666 777 99 4 4 4 4 8 4 55 4 4 777 8 4 55 8 55 4 3333333 4444 4 3 55 55 666 55 44 66666 666 44 777777777 3 3 999999999999 77 3 666 33333333 3 55 99999 88 55
lowQualScore : . . . . . . . . .. .. . .. . . .. . . ........ .. ... . . . .. . . . . ..... ................ ... .. . . . . . . .. . . ... . . .. . .. . ....... .... . . .. .. ... .. .. ..... ... .. ......... . . ............ .. . ... ........ . .. ..... .. ..
lowQualScore : 0 3 3 0 0 2 4 0 44 99 4 44 0 4 11 4 4 66666666 11 888 4 4 4 11 0 0 0 0 00000 5555555555555555 000 55 0 0 0 0 0 0 55 0 0 000 0 0 55 0 55 0 0000000 5555 0 6 00 00 444 00 11 44444 444 00 222222222 3 6 666666666666 44 6 444 22222222 6 00 11111 66 55
consensus : CGTACACAA-AGTATTATCTTT-AAA-CAGTTTGAATAAGAGCT-CTGGAG-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-C--T-GCTTA-TTTT--GAGA--A---CA--TA-AGC-----TTTAT---T-GGAGC--TA-T---A-AAATC-AAATA--------T---ACGNTCCTCTGGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCA
Reference ( family-6 ) : CGTACACAA-AGTATTATCTTT-AAA-CAGTTTGAATAAGAGCT-CTGGAG-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-C--T-GCTTA-TTTT--GAGA--A---CA--TA-AGC-----TTTAT---T-GGAGC--TA-T---A-AAATC-AAATA--------T---ACGNTCCTCTGGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCA
gi|1 : ACAA-ATGATTATCTTTCAAA-TGGTTTAAATCAAATCT-CTGTAA-CTT--TACAAGAACAAAAGTAAT----TAAAG-ATTTGGACTA-TTTT-T--ATAGGTTCA-T--ACC---AGCAGAAAAAAT-GCTAAGG-G-TG-TTTATGTTTATGAAAA----------------CA---ATGCATA-ATGT-GGGTA-T-CAT-CT-TAAG-AT-CA--TAT-GATGC-ACA---TGGT-T-AT--CCTA-CAAT--GCA-ACCCGGCATGA-C--T---TTA-TTTT--CAGA--A---AA--TA-ATCA----TTCAT------GAGC---------A-AAA-C-AA
gi|10 : cttgggaatcattataagttcatacgttactttgaaaaatcgcgcaattttcaataaattatggatcttttataattgattttttgcattaccaaaatgccaaTA-TATT--GAGATAA---CAAATA-TGCACCTGTTTATAATT-AGAGC--TA-TGGAA-AAATC-AAATAAGCGACAGTGA-ACGTTCCTCTGGTGT---TCCTGTTGCCTC-CCAAAA-----TGA-TAAAA--TCCCCtaatcagtg
gi|11 : attccgaaaacactttcgctttataaaC--AGA-G-TG-TTTG-G-----GATAA----------------TG---GTGCAT--CTTT-CAATG-T-TAT-TTGTAGT-AT-TA--ACA-GATAG-TTA---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-CT-T-GCTTA-TTTT--GAGA--A---CA--TT-TGC-----TTTAT---T-AGAGG--TA-T---A-AAATC-AAATA--------T---ACATTCTTCTGGT-T---T--------TTC-CC--AA-----TG--TTAAA--cataaggaatagttatggatccgacgtgagaaacggcgagaagtagtgcagtggatcaagagtaaggaatgttgtc
gi|12 : AGC--TA-T---G-AAATC-AAATA--------C---ACGTTCCTCTGGT-T---T--------CTT-CC--AA-----TG--TTAAA--TCCCCAtnnnnnnnnnnnnnnnnnnnnnnnnnacgtgtgagagagaattagtttggatc
gi|16 : AATA--------C---ACGTTTCTCTGGT-T---T--------CTC-CC--AA-----TG--TGAAA--TCtaaggaatagttggatccgacgtgacggaatagttggatcagagtaacgatgtgtcgcggt
gi|17 : AAA-ATTT--AATG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-
gi|2 : ATAAGAGCTTCTGGAGTCTT--CAAAAGAACAA--GTTATA-TCCAAAA-GGTT--ACCG-TTTT-T--G-----TCATT--GC----------ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCATTCTTTT-CGATG-TATAT-TTGTAGCAATGCAATAAA-GAT---TTACGGTGGCAA-CT--TCGA-CAGT--GCACAC-------GG-T--T-GCTTG-TTTTAAGAGA--A---CA--TA-AGC------TTAT---T-GGAGC--TATT---A-TAATCTAAATC--------T---ACAATCCT-TGGT-TCTAT--------TCC-CC--AAAATTTTG--TTTAATTTCCCC
gi|3 : tttCGTACACAACAGTAT-ATCTTT-AAAACAATTTAAATAACAGCT-CTGGAT-CTTATCAAA-GAACAAAAATCATA-TCCAAAC-ATAT--ACTG-TTT-----------TCATTCAGCCTCTA-AAG-ATAAAT--C--AGAGG-TG----G-G-----AAAAA----------------TGCCTGCCCAT--CTTT-C-ATGCT-TATATTA-AGC-AT-TC--AAA-GATGC-TCT---TTGCTA-TT--CCGACCAGTCGGCA-AC-------GA-T--T-GC--A-TTGT--GTGA--AAACCA--TA-AGCA----TTTAA---T-GCAGC---A-T-----AAATC-AAATC--------T---ACAA-CCTC-GGT-C---T--------CTC-CC--AA------GATTTAAA--TTCCCccccccataagaatagttggatccgacgtgaccggaaatagtggatccctagtaacgattgtgtcacagtgatataaggtacgc
gi|4 : gcttggattcatttaattctaatgttttgcactgaaagtagTTTGAATAAGAGCT-CTGGAT-CTT--CAAAAAGA-AAAAATTATA-TCC-AAA-GTTT--ACTGTTTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----G-AAA----------------TG-----GCAT--CTTT-CGATG-T-TA--TTGTAGCAAT-CA--TAA-GATGCTTTC---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA----T-GCTTG--TTT--GAGA--A---CA--TAGAGC-----TTTAT---TCGGAGC--T--T---ATAAATC-AAATC--------TAAAAC-ATCCTCT-GT-T---T--------C-C-CC--AA-----TG--TT-AA--TCCCCActa
gi|5 : -G-TG-TTTA-T-----CAAAA----------------TG---GTGCCT--CGTT-GGGTA-T-CAT-CTTAAGA-AT-CA--ACA-GATGC-ATA---TGAC-A-TT--CCAA-TAGT--TCA-GT-------GA-C--CAATTTA-TTTT---AGA--A---AA--TA-AGC-----ATTAA---T-TGAAC--AA-G---A-AAAtaggaatagtttggatccgacgtgacggaatacgtggatcctnnnnnnnnnnnnnnnnnnnnnnnnnaannnnnnnnnnn
gi|6 : cctggggatcattgtgtcctactttactttaaaaaatcgcgtaattttcaataccaaggatattttcaagaaagcgtttacattacagaatgtaataaacccttctctttcaaattgtcttaagatttgaaatcttcatcatacttgcaaaaatgtgtttgCGTA-ACAA-AGTATTATCTTT-AAA-CAGTTTTAATAAGAGCT-CTGAAT-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTT---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-TG-T-GCTTG-TTTT--GAGA--A---TA--TA-AGC-----TTTAT---T-GGAGCTATA-T---A-AAATC-AAATC--------T---ACAATCCTCTGGC-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCAaatgcaatattc
gi|7 : TTA-AAA-TACTTTGAATAAGA-TT-CTGGAG--TT--CAAA-GAACAAA-GTTATAACCCAAAA-GTTG--ACTG-TTTT-TTAG-----TCATT--GCC---A-CAG-ATAAGTTGC--AGA-GGTGGTTTG-G-----GAGGAGGGAGAGGGGGAGGGGTG---GTGCAT--CTTTGCGATG-T-TAT-TTGTTGC-AT-CA--AAAAGATGC-TTA---TG-C-A-TTGGCCGAGCAGT--GCA--C-------GA-CGTT-G-TTA-TTTT--GA-A--A---CA--TA-AGC-----TTTAT---T-GAAGC--TA-T---A-AGATC-AAATA--------C---ACGGTTCTCTGGT-T---T--------CTCGCC--AA-----TG--TT
gi|8 : TAAGAGCT-CTGGAG-CTT--CAAAAGAACAAACTTTATA-TGAAAAA-GTTT--ACAG-TTTTTT--G-----TCATT--GTC---A-CAG-ATAAGT-GC--AAG-A-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--ACA-AA-------AATT--T-GCTTA-TTTT--GAGA--A---CA--TA-TGC-----TTTAT---T-AGAGC--TA-T---A-AAATC-AAGCA--------T---ACATTTTTCTAGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCAt
gi|9 : TAAGAGCT-CTGGAG-CTT--CAAA-GAACAAACTTTATA-TGAAAAAAGTTT--ACAG-TTTT-T--T-----GCATT--GTC---A-CAG-ATA-GT-GC--AAG-A-TG-GT-G-G-----GAAAA-----------------G---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-ATTT--CCGA-CAGT--ACA-AA-------AATT--T-GCTTATTTTT--GAGA--A---CA--TA-TGC-----TTTAT---T-AGAGC--TA-T---A-AAATC-AAGCA--------T---AC-ATTTTCTAGT-T---T--------TTC-CC--AA-----TG--TTAAA--TCCCCAtaaggaatagttggat
blockSeqs : . C T . A A T GT AT A AA A A . T T TAG CA TCT . . T . G G G . . GGGAGAGGGGGAGGGG CCT TC G C A A A G AT A T CGG A T GG C CG C . CGT A T AA TA AAC AA GA ACCTG AAT CG TATGGA T T TAAA AT . CTA . G . AATTT AT TT
blockSeqs : . . . . G . T . A AA . . . . . G . . . . . . . . . . . . . . . . . . A . . . . . T . . G . . . CT . . . . . . T A . A TATAT . . T GT . . . . . . . .
blockSeqs : . . T . T . A AG . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TG . . . . . . T . . A TATT . . C GT . . . . . . . .
blockSeqs : G . T . A CT . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TT . . . . . . A . . G TAT . . C AA . . . . . . . .
blockSeqs : . G . . CT . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TT . . . . . . A . . G TAT . . T AA . . . . . . . .
blockSeqs : . G . . G . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . A . . T AAG . . T AA . . . . . . . .
blockSeqs : . G . . G . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . A . . G TAT . . T GG . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . A . . G TAT . . C AT . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . A TAT . . T A . . . . . . . .
blockSeqs : . . . . . T . . A AT . . T A . . . . . . .
blockSeqs : TT .
blockSeqCons : ** G******* ** ***** ** ******* CT** ***** G* TAT****** T*********** ******** ** **
originalCons : CGTACACAA-AGTATTATCTTT-AAA-CAGTTTGAATAAGAGCT-CTGGAG-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GA-C--T-GCTTA-TTTT--GAGA--A---CA--TA-AGC-----TTTAT---T-GGAGC--TA-T---A-AAATC-AAATA--------T---ACGNTCCTCTGGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCA
finalCons : CGTACACAA-AGTATTATCTTT-AAA-CAGTTTGAATAAGAGCT-CTGGAG-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-TG-------TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--GCA-AC-------GACT--T-GCTTA-TTTT--GAGA--A---CA--TA-AGC-----TTTAT---TG-GAGCTAT------A-AAATC-AAATAT-----------ACGNTCCTCTGGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAAATATTGGATCTTGAACGTGATGGAATAGTTGGATCATAGCAACGATGTCACAGTG
Unaligned ( gi|14 ): AAAAAGTTTGCGATTCCGACATTGACGGAATAGTAGTCATCATCAGTAACGATGTGT
Unaligned ( gi|15 ): CGATGTGACGGAATAGTTGGATCACAGTAAGGATGTGTCACGGTGAA
Alignments
lowQualScore : 1 1 1 1 11111111 11111 2222222222222222 11 11111 111111111111 11111111
lowQualScore : 5 3 7 0 0 0 1 5 66 66 9 66 5 4 66 4 4 44444444 66 777 4 4 4 66 4 4 4 4 00000 6666666666666666 777 99 4 4 4 4 8 4 55 4 4 777 8 4 55 8 55 4 55 33 55 3 55 55 666 55 44 66666 666 44 777777777 3 3 999999999999 77 3 666 33333333 3 55 99999 88 55
lowQualScore : . . . . . . . . .. .. . .. . . .. . . ........ .. ... . . . .. . . . . ..... ................ ... .. . . . . . . .. . . ... . . .. . .. . .. .. .. . .. .. ... .. .. ..... ... .. ......... . . ............ .. . ... ........ . .. ..... .. ..
lowQualScore : 0 3 3 0 0 2 4 0 44 99 4 44 0 4 11 4 4 66666666 11 888 4 4 4 11 0 0 0 0 00000 5555555555555555 000 55 0 0 0 0 0 0 55 0 0 000 0 0 55 0 55 0 55 88 55 6 00 00 444 00 11 44444 444 00 222222222 3 6 666666666666 44 6 444 22222222 6 00 11111 66 55
consensus : CGTACACAA-AGTATTATCTTT-AAA-CAGTTTGAATAAGAGCT-CTGGAG-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--GCA-A--CGAC-TTG--CTTA-TTTT--GAGA--A---CA--TA-AGC-----TTTAT---T-GGAGC--TA-T---A-AAATC-AAATA--------T---ACGNTCCTCTGGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCA
Reference ( family-6 ) : CGTACACAA-AGTATTATCTTT-AAA-CAGTTTGAATAAGAGCT-CTGGAG-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--GCA-A--CGAC-TTG--CTTA-TTTT--GAGA--A---CA--TA-AGC-----TTTAT---T-GGAGC--TA-T---A-AAATC-AAATA--------T---ACGNTCCTCTGGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCA
gi|1 : ACAA-ATGATTATCTTTCAAA-TGGTTTAAATCAAATCT-CTGTAA-CTT--TACAAGAACAAAAGTAAT----TAAAG-ATTTGGACTA-TTTT-T--ATAGGTTCA-T--ACC---AGCAGAAAAAAT-GCTAAGG-G-TG-TTTATGTTTATGAAAA----------------CA---ATGCATA-ATGT-GGGTA-T-CAT-CT-TAAG-AT-CA--TAT-GATGC-ACA---TGGT-T-AT--CCTA-CAAT--GCA-ACCCGGC-ATGACTTTA-TTTT--CAGA--A---AA--TA-ATCA----TTCAT------GAGC---------A-AAA-C-AA
gi|10 : cttgggaatcattataagttcatacgttactttgaaaaatcgcgcaattttcaataaattatggatcttttataattgattttttgcattaccaaaatgccaaTA-TATT--GAGATAA---CAAATA-TGCACCTGTTTATAATT-AGAGC--TA-TGGAA-AAATC-AAATAAGCGACAGTGA-ACGTTCCTCTGGTGT---TCCTGTTGCCTC-CCAAAA-----TGA-TAAAA--TCCCCtaatcagtg
gi|11 : attccgaaaacactttcgctttataaaC--AGA-G-TG-TTTG-G-----GATAA----------------TG---GTGCAT--CTTT-CAATG-T-TAT-TTGTAGT-AT-TA--ACA-GATAG-TTA---TGGC-A-TT--CCGA-CAGT--GCA-A--CGAC-TTG--CTTA-TTTT--GAGA--A---CA--TT-TGC-----TTTAT---T-AGAGG--TA-T---A-AAATC-AAATA--------T---ACATTCTTCTGGT-T---T--------TTC-CC--AA-----TG--TTAAA--cataaggaatagttatggatccgacgtgagaaacggcgagaagtagtgcagtggatcaagagtaaggaatgttgtc
gi|12 : AGC--TA-T---G-AAATC-AAATA--------C---ACGTTCCTCTGGT-T---T--------CTT-CC--AA-----TG--TTAAA--TCCCCAtnnnnnnnnnnnnnnnnnnnnnnnnnacgtgtgagagagaattagtttggatc
gi|16 : AATA--------C---ACGTTTCTCTGGT-T---T--------CTC-CC--AA-----TG--TGAAA--TCtaaggaatagttggatccgacgtgacggaatagttggatcagagtaacgatgtgtcgcggt
gi|17 : AAA-ATTT--AATG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-
gi|2 : ATAAGAGCTTCTGGAGTCTT--CAAAAGAACAA--GTTATA-TCCAAAA-GGTT--ACCG-TTTT-T--G-----TCATT--GC----------ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCATTCTTTT-CGATG-TATAT-TTGTAGCAATGCAATAAA-GAT---TTACGGTGGCAA-CT--TCGA-CAGT--GCACA--CGG--TTG--CTTG-TTTTAAGAGA--A---CA--TA-AGC------TTAT---T-GGAGC--TATT---A-TAATCTAAATC--------T---ACAATCCT-TGGT-TCTAT--------TCC-CC--AAAATTTTG--TTTAATTTCCCC
gi|3 : tttCGTACACAACAGTAT-ATCTTT-AAAACAATTTAAATAACAGCT-CTGGAT-CTTATCAAA-GAACAAAAATCATA-TCCAAAC-ATAT--ACTG-TTT-----------TCATTCAGCCTCTA-AAG-ATAAAT--C--AGAGG-TG----G-G-----AAAAA----------------TGCCTGCCCAT--CTTT-C-ATGCT-TATATTA-AGC-AT-TC--AAA-GATGC-TCT---TTGCTA-TT--CCGACCAGTCGGCA-A--CGA--TTG--C--A-TTGT--GTGA--AAACCA--TA-AGCA----TTTAA---T-GCAGC---A-T-----AAATC-AAATC--------T---ACAA-CCTC-GGT-C---T--------CTC-CC--AA------GATTTAAA--TTCCCccccccataagaatagttggatccgacgtgaccggaaatagtggatccctagtaacgattgtgtcacagtgatataaggtacgc
gi|4 : gcttggattcatttaattctaatgttttgcactgaaagtagTTTGAATAAGAGCT-CTGGAT-CTT--CAAAAAGA-AAAAATTATA-TCC-AAA-GTTT--ACTGTTTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----G-AAA----------------TG-----GCAT--CTTT-CGATG-T-TA--TTGTAGCAAT-CA--TAA-GATGCTTTC---TGGC-A-TT--CCGA-CAGT--GCA-A--CGA---TG--CTTG--TTT--GAGA--A---CA--TAGAGC-----TTTAT---TCGGAGC--T--T---ATAAATC-AAATC--------TAAAAC-ATCCTCT-GT-T---T--------C-C-CC--AA-----TG--TT-AA--TCCCCActa
gi|5 : -G-TG-TTTA-T-----CAAAA----------------TG---GTGCCT--CGTT-GGGTA-T-CAT-CTTAAGA-AT-CA--ACA-GATGC-ATA---TGAC-A-TT--CCAA-TAGT--TCA-G--TGAC-CAA--TTTA-TTTT---AGA--A---AA--TA-AGC-----ATTAA---T-TGAAC--AA-G---A-AAAtaggaatagtttggatccgacgtgacggaatacgtggatcctnnnnnnnnnnnnnnnnnnnnnnnnnaannnnnnnnnnn
gi|6 : cctggggatcattgtgtcctactttactttaaaaaatcgcgtaattttcaataccaaggatattttcaagaaagcgtttacattacagaatgtaataaacccttctctttcaaattgtcttaagatttgaaatcttcatcatacttgcaaaaatgtgtttgCGTA-ACAA-AGTATTATCTTT-AAA-CAGTTTTAATAAGAGCT-CTGAAT-CTT--CAAAAGAACAAAAGTTATA-TCCAAAA-GTTT--ACTG-TTTT-T--G-----TCATT--GCC---A-CAG-ATAAGT-GC--AGA-G-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTT---TGGC-A-TT--CCGA-CAGT--GCA-A--CGAT-GTG--CTTG-TTTT--GAGA--A---TA--TA-AGC-----TTTAT---T-GGAGCTATA-T---A-AAATC-AAATC--------T---ACAATCCTCTGGC-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCAaatgcaatattc
gi|7 : TTA-AAA-TACTTTGAATAAGA-TT-CTGGAG--TT--CAAA-GAACAAA-GTTATAACCCAAAA-GTTG--ACTG-TTTT-TTAG-----TCATT--GCC---A-CAG-ATAAGTTGC--AGA-GGTGGTTTG-G-----GAGGAGGGAGAGGGGGAGGGGTG---GTGCAT--CTTTGCGATG-T-TAT-TTGTTGC-AT-CA--AAAAGATGC-TTA---T-GC-A-TTGGCCGAGCAGT--GC--A--CGACGTTG---TTA-TTTT--GA-A--A---CA--TA-AGC-----TTTAT---T-GAAGC--TA-T---A-AGATC-AAATA--------C---ACGGTTCTCTGGT-T---T--------CTCGCC--AA-----TG--TT
gi|8 : TAAGAGCT-CTGGAG-CTT--CAAAAGAACAAACTTTATA-TGAAAAA-GTTT--ACAG-TTTTTT--G-----TCATT--GTC---A-CAG-ATAAGT-GC--AAG-A-TG-TTTG-G-----GAAAA----------------TG---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-A-TT--CCGA-CAGT--ACA-A--AAAT-TTG--CTTA-TTTT--GAGA--A---CA--TA-TGC-----TTTAT---T-AGAGC--TA-T---A-AAATC-AAGCA--------T---ACATTTTTCTAGT-T---T--------CTC-CC--AA-----TG--TTAAA--TCCCCAt
gi|9 : TAAGAGCT-CTGGAG-CTT--CAAA-GAACAAACTTTATA-TGAAAAAAGTTT--ACAG-TTTT-T--T-----GCATT--GTC---A-CAG-ATA-GT-GC--AAG-A-TG-GT-G-G-----GAAAA-----------------G---GTGCAT--CTTT-CGATG-T-TAT-TTGTAGC-AT-CA--AAA-GATGC-TTA---TGGC-ATTT--CCGA-CAGT--ACA-A--AAAT-TTG--CTTATTTTT--GAGA--A---CA--TA-TGC-----TTTAT---T-AGAGC--TA-T---A-AAATC-AAGCA--------T---AC-ATTTTCTAGT-T---T--------TTC-CC--AA-----TG--TTAAA--TCCCCAtaaggaatagttggat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAAATATTGGATCTTGAACGTGATGGAATAGTTGGATCATAGCAACGATGTCACAGTG
Unaligned ( gi|14 ): AAAAAGTTTGCGATTCCGACATTGACGGAATAGTAGTCATCATCAGTAACGATGTGT
Unaligned ( gi|15 ): CGATGTGACGGAATAGTTGGATCACAGTAAGGATGTGTCACGGTGAA