lowQualScore : 22222222222222222222222222222222222222222222222222222222222222 111111111111 111111111111111111111 111111111111111111111111111111111111111111111
lowQualScore : 4 4 1 666666666 4 11111111111111111111111111111111111111111111111111111111111111 4 4 1 22222 888888888888888888888888888888888 1 11 1 1 1 22 222 111 222222222222222 11 11 111 111 111111 111 111 1111 1 22222 33333 11111 22222 111 1 1 1 222222222222 3333333333333 333 55555555555555 222 11111111 222 000000000000000000000 222 1 11 1 11 000000000000000000000000000000000000000000000 1 333333 222 11 222 222 333333333333333 222222 3333 22 11 222222 1111 111 444444444444 1111111 1111 2222222 11 1111 222222222 111 1 111 44444444444444444 222222222222222222 3333333 111 444444444 22 11111 1111 4444444444444444444444444444444444444444 222222 22222222222 111 1 1 1
lowQualScore : 0 0 5 222222222 6 6 0 11111111111111111111111111111111111111111111111111111111111111 6 0 6 0 6 5 88888 888888888888888888888888888888888 4 2 3 88 7 3 7 5555 77 5 6 4 6 5 0 8 4 4 88 4 4 8 4 44 11 4 4 555 333 55 5 66 5 888 8 4 111111111111111 66 4 1 44 888 999 4 99 4 8 333 777 4 777 222222 111 000 6 2222 0 6 6 7 6 99 33333 0 6 6 6 99999 66666 6 99 00000 6 6 111 5 0 9 6 6 5 6 3 444444444444 6 6666666666666 5 77 000 5 5 6 77 3 8 8 3 8 00000000000000 3 222 8 8 9 99999999 1 444 8 6 000000000000000000000 444 0 33 8 8 8 0 0 0 11 6 333333333333333333333333333333333333333333333 88 3 6 888888 8 888 00 666 6 6 6666 111 7 0 888888888888888 111111 4444 8 11 8 8 8 6 22 444444 0000 77 555 5 222222222222 8888888 5 1 77 5 3 77 1 5 5 5 5 0000 0000000 999999999 1 3 888 22 3 4 4 3 0000 000000000 0 4 66 5 777 2 000 66 22222222222222222 1 1 3 1 3 6 666666666666666666 9999999 6 6 111 6 99 6 3 6 3 444444444 33 11111 99 9999 3 6 6 6 6 3 8888888888888888888888888888888888888888 6 555555 1 7 1 77777777777 888 6 4 222 77 99 6 6 0 5 5
lowQualScore : . . . ......... . . . .............................................................. . . . . . . ..... ................................. . . . .. . . . .... .. . . . . . . . . . .. . . . . .. .. . . ... ... .. . .. . ... . . ............... .. . . .. ... ... . .. . . ... ... . ... ...... ... ... . .... . . . . . .. ..... . . . . ..... ..... . .. ..... . . ... . . . . . . . . ............ . ............. . .. ... . . . .. . . . . . .............. . ... . . . ........ . ... . . ..................... ... . .. . . . . . . .. . ............................................. .. . . ...... . ... .. ... . . .... ... . . ............... ...... .... . .. . . . . .. ...... .... .. ... . ............ ....... . . .. . . .. . . . . . .... ....... ......... . . ... .. . . . . .... ......... . . .. . ... . ... .. ................. . . . . . . .................. ....... . . ... . .. . . . . ......... .. ..... .. .... . . . . . . ........................................ . ...... . . . ........... ... . . ... .. .. . . . . .
lowQualScore : 0 0 0 000000000 0 0 0 00000000000000000000000000000000000000000000000000000000000000 0 0 0 0 0 0 55555 000000000000000000000000000000000 0 5 3 33 3 3 3 3333 77 0 7 0 7 0 0 8 4 4 88 4 0 0 0 88 44 4 4 222 111 11 0 99 0 888 9 4 777777777777777 11 4 1 66 888 888 4 44 4 9 999 000 4 666 888888 888 555 7 7777 8 7 7 3 7 22 33333 7 7 7 7 33333 77777 7 22 88888 7 7 777 0 7 2 7 7 2 7 2 222222222222 7 7777777777777 7 99 000 7 7 7 77 2 0 0 2 0 22222222222222 2 000 0 0 0 00000000 4 222 0 0 222222222222222222222 222 0 00 0 0 0 8 8 6 00 6 888888888888888888888888888888888888888888888 88 3 7 333333 0 000 00 222 7 7 7777 222 2 8 222222222222222 444444 0000 0 88 0 0 0 7 77 000000 3333 99 999 7 666666666666 0000000 7 6 99 7 0 99 4 0 5 0 0 6666 9999999 111111111 4 2 888 88 4 4 4 4 6666 000000000 2 5 99 0 444 0 000 11 55555555555555555 7 0 2 5 3 7 333333333333333333 8888888 7 7 777 7 22 7 7 7 5 555555555 22 55555 22 0000 7 7 7 7 7 3 0000000000000000000000000000000000000000 7 222222 0 3 5 00000000000 222 7 7 555 33 22 7 7 0 0 0
consensus : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAGTGTGTGCATCTGTCTGATA-CANAATNANGGNTGTGGTTTTTTTCNCNTATACTTTGNANTGT-CT--GTTTATTTTCG-GCAGATTGTATTCCTAGAGGCCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAGT-ATAAAGTACGACAATGTTGTCAATGCCA-GGGGG-ACACCGAG-TTCTAC-TGTCACA-CGT-GTA-AAC-ATGATCTGTG-T-TTACNG-TG--TAAAGAGAGA-CATGTCA-T--GGA-TC---TA-CAT-A----CCANNCA----C--CA-TGAATGTT--GTG-A-T-TT-ACC-GT-GAGAA---GTTTAA--CT-ACATCCCCAG-ACAAGAAATC-TGTGTCAGACATCCAGACAGGATCTATNNNATGTTCTGT-CAGTCGTGT---GAANTTT-CTGCC-TGTGTCCGATGTTT-AGAGCACCGA--AAACACCAACTN-CTGAA-CATTAGAACAGCCT-AT-CAA--A-AAAGC-----GA-CAA--CAACAC-C-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAAACTCTC-TATAA-CCGTCNTGTT-CTCCTGNCGGGAATCCAAACT-A--ATCCAAA-CT-------------TGTCCCCCGCAAATCTGTC-ACCG--TCAGTCACAACTG-ATGTCAACAAAA-GC-CCAGAGA-CTGAAGNATCTGATTG-A-CACTGTGGTATGC-GATGTT--A-A-CAA-G---ATGCAGANGTTTATTGATTTGC-TAGAA-TACAA-CAGC-AGAAGAGAAAAA--TGAAC-AGACA-CTT--TCCTCACCCG-AT-ACAAAACT--ATGAAGACAGATATGAA-CAATCAGC-CA-ACA-AAGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAG--ATA--------------------AAG----------------------ACCNGCCG-TG-TCCCCCA------GAT-GAACTTGGACGGTGCGAGTCAGTT-AT-TGGGNG-N-AATCACAGAAATCCAAATC---GT-C--AA-CAAGA--A-AACGGCAAGAAATTAG-AAATAG-ACGAGTGTGTGAA-ACTGACG-TCCACA-CCTG-TATTACAC---GC-GTC-C-GTCTGCG--TGACAG--ATGT-TAGT------GATGT----GTNTCACA-TATC--TGG-TGTGA--CGTCAGACCGGGT-CTGGGTAT-CT-G----ATG-AN---GA---CG-A--TCTCATCT---TGACAGA-CAC-AACAGGA----GACAC---------TATACACCGT--GTGACAGATA-N-AACACC---ATTGTCTAT----AGGAGGA-CTACACACAGTGAACAGTTCTGGTGAACTGNTTTATA-TAGACA-----GT--G-AN--TATAACATCAAT-C-AAACT-GTC-TAT---AGACAG-TAAAAC--AG-TCACCACACT-GTTAGAGA--GACC--TACATCACCATGGCGACCACGGNGTGTGT--ACTGC--TCCCCGTCCA-CTG-GAGATC-TGATGGTCG-GGATG------TANA-A-CNCTG-AT---A----CAGA------GACAGG-CAAGAT---AGACCGGTACAACAGTACAGG-CAACA-CGTNC-TGA-CNATGCA-ACAC-GA--CGACA-C-CGGTCACAAACTCTA
Reference ( gi|2 ) : CTGT-TTGGGA-GCATAATGTTTCATAAAGT-CGTCCTCTTCATTTTTACAGTATCAAGAAT-CAC------AGTGC-TTTA--GGTAGAAAAATTCCACAGTT-TTGATC----ATGTTTATCATTTTCTTGTCATCC-TTTATTTCCTTTTCCTAC-ATTGATTACTAATATGTGTAT--GT-TAATAACATTATTATGAT-GTG-------CCATTTA--CTTTATACTGT-CT--GTTTATTTTCA-GCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACAGCATG-GACACACTAGGACTCAGT-ACACAGT-ATAAAGTACGACATTGTTCTCAATGCCA-GGGGG-ACACCGAA-TTCTAC-TGTCACA-CGT-GTA-AAC-ATGACATGTG-T-TTACTC-TG--CAAAGAGAGG-CATGTCA-T--GGA-TC---TA-CAT-A----CAATCCA----C--CA-TGAATGTT--ATG-A-T-T--ACC-GT-GAGAA---GTTTAA--CT-ACATCCCCCG-ACAAGAAATT-TGTGCCCGACATCCAGACAGGATCTATGAAATGTTCTGT-CAGTCGTGT---GAACTTT-CTGTC-TGTTTCCGATGTTT-AGAGCACCGA--AAACACCAAATA-TTGGA-CATTAGAACAGCCT-AT-CAA--A--AAGC-----GA-CAA--CAACAC-C-GCGAAATCATTG-ACAA-CAT---CAGAAGTCAGACTATC-TATAA-CTGTCGTGTT-CTCCTGGCAGGAA------------ATCCAAA-CT-------------TGTCCCCCACAAATCTGTC-ACCG--TCAATCACA---G-ATGTCAACAAAA-GC-CCAGAGA-CTGAAGGATCTGATTG-A-CACTGTGGTATGT-GATGTT--A---C-A-G---ATACAGAGGTTTATTGATTTGC-TAGAA-TACAA-CAAC-AAAAGAGAAAAC--TGAAC-AAACAACTTGTTCTTCATC---A--ACAGAACT--CTGAACACAGGTATGAA-CAATCAGC-CA-ACA-GAGCGGTACAATTCCTCTTGTTTATAAAGACCAGTCGTGTCCCCCAG--AAA--------------------AAG----------------------ACCCGCCG-TG-TCCCCCA------GAT-AAA---GGACAGTCCTAGTCAGTT-AT-TAAATG-C-AATCACAGAAATCCAACT----GT-C--AA-CAGGA--A-AACGGCAAG----TAG-AATTAG-ACGAGTGTGTGAA-ACTGACG-TCCACA-CCTA-TATTACAC---GT-GTC-T-GTCTGTG--TGACAG--ATGT-TCGT------GAAGT----GTATCACA-TATC--TGG-TGTGA--CGTCAGACCGGGT-CTGGATAT-CT-G----ATG-GT---GA---CA-A--TCTCATCT---TGGCAGA-CAC-AACAGGA----GACAC---------TATACACCGT--GTGACAGATA-C-AACTCC---ATTGTATAT----AGGAGGA-CTACACACAGTGAACAGTTCTGGTGAACTGATTTATA-TAGACA-----GT--G-AT--TACAACATCAAT---AAACT-GTC-TAT---AGACAA-TAAAAC--AG-TCACCACACT-GTTAGAGA--GGCT--TACATCACCATGGTTACCACGGAGTGTGT--ACTGT--TCCCCGTCCA-CTG-GAGATC-TGATGGTCG-GGACG------CATA-A-CACTG-AT---A----CAAA------GACAGG-CAAGAT---ATCCCGGTACAACAGTACAGGACAACA-GGTAC-TGA-CTATACA-GCAC-GA--CAACA-C-CGGGCACACACTGTA
gi|1 : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAATGTGTGTATCTGTCTGATA-CATAATTAGGGTTGTGGTTTTTTTCACTTATACTTTGTACTGTTCTTGGTTT-TTTTCAAGCAGATTGTATTCCTAGAGACCCAGAA-TCTCCACATCATG-GACACA-TAGGACTCAGT-ACACAGTTATAAAGTACGACATTGTTCTCAATGTCA-GGGGGGACACCGAG-TTCTAC-TGTCACA-CGTTGTA-AACCATGCC-TGTGCT-TTACTGATGAGTAAGAAGAGGACAGGTCA-T--GAA-AT---TAACATTA----CCATCCA----C--CAATGA-TGTT--GTT-A-TCT--ACC-GTTGAGAAAAAGTTTAAAACT-ATATCCCC-G-ACAAG---TTCTGTGTCCGACATCCAGACAGGATCTATGAAATGTTCTGTTCAGTCGTGT---GAACTTTTCTGTCCTGTTTCCGATGTTTTAGATCACCAATTATGGACCAACTAACTGAA-CAT-AGAACAGCCT-AT-CAA--ACAAAGC-----GA-CAA--CAACAC---GAGAAATCATTATACAA-CACATACAGAACTGAGAATCTCGTATAA-CTGTTGTGTT--TCCTG-CAGGAA------------TTCCAAA-CTGATACCAAAACTTTGTCCCC-ACAAATCTGTC-ACCG--TCAATCACA---GCATGGCAACAAAA-GCTCCAGAGAACTGAAGGATCTGATTG-AACACTGTGGGATGTTGATACT--A---C-A-ACAAATACAGAAATTTATGTATT-GCGTAGAAATACAAACAGCCAGAAGAGAAAATATTGAACCAGACCGCCTCACC--CACC---A---CAAAACTGATAGAGGACAGATATGAAACAATCAGCACATACAAGAGTGCT-CA---TCTCTTGTTTATTAAAACCAGTCGTGTCCCCCAG--ATA--------------------AAGGAC-------------------ACCCCCTA-TA-TCTTTCA------
gi|3 : AGTATATGCAT--GT-TAATA-CAAAATGACGAG-GTG-------TCTTATA--CTTTAAAATTT-CT--GTTTATTTTCA-GCAGA---------------CCCAG-T-CCTCCACATCATG-GACACACTAGGACGCCTT-ACTCAAT-ATAAAGTACGGGAGTGTTGTCAATGCCA-GGGGG-ACACCGAG-TTCTAC-TGCCACA-CGT-GTA-AAT-ATGATCTGTG-T-TTCCAG-TG--TAAAGAGATA-CATGTCA-T--TGA-TC---TA-CAT-A----CCAAAGA----C--CA-C-AATGTT--GTG-A-T-TT-ACC-GT-GAGAA---GTTTAA--CT-ACATCCCCAG-ACAAGAGATC-TGTGTCCAACATCCGGAGAGGGTCTATGAAATGTTCTGT-CAGTCGTGT---GAACTTT-CTTTC-TGTTTCCAATGTTT-AGAGCACCAA--AAACACCAAATA-ATGGA-CATTAGAACAGCCT-AT-CAA--AGAAAGC-----GG-CAA--CAACAC-C-GGGAAATCATTA-ACAG-CAT---CAGAAGTGAGACTCTC-TATAA-CTGTCGTGTT-CTCCTGGCAAGAATCCAAACTTAT-ATTCAAA-CT-------------TGTCCGCCGCAAATATGGC-ACCG--TTCATCACAACTG-ATGCCAACAAAA-GC-CCAGATA-TTGAAGAATCTGATTG-A-TACTGTAGTATGT-GATACT--AGAGCAA-G---ATGCAGAGGTTTATTGA-TTGC-AAAAA-TACAA-CAAC-AAAAGAGAAAAA--TGAAG-AGACACCTCACT----AAC---AT-ACAGAACT--ATGAAGACAGGTATGAA-CAATCAGC-CA-ACA-AAGCGGTACAATTCCTTTTGTTTATGAAGACCTATCGTATCCCCCAG--AAA--------------------AAG----------------------GCCACCCC-TGATCTTCCA------acaacactgctgcgtccttgactgaggattcaaacatggagatgtgagtcagttgattgagggggaatccgaaatccatatattcaacaggaaacgacaagtaggaaatagacgagtggttgaaactgacgatccacaacctgctcttaacagagtcgtcatagtctgcttgacagtgtgttgtattactggagtttacgtagtttatacctagctgtgaaccgtcagaccgggtctgggtattctgcctcaagacgacaaaatctcacctgcatgacgacacaacagagacactatacaccgttagtgacaactagaaccagggttattagcaggaggagctacaccagtcgacagttcggtgaactgatttataataacagtaatgatacacatcaatctaaaactgttcatcatagacaaataaaacatttaccacatttgttagagagctacatccacatggagcccattcagtgtgtttactgtccccgtccaactagagatctgaatcgcggacgtttaaacagtgcatacactgacaggcaagaaataccgtcaacagtacaggacaacatggtactactatacaatacaacaacactcggtca
gi|11 : TGT-CT--GTTTATTTTCG-GCAGATTGTATTCCTAAAGGCAGTGAT-CATCCACATCATG-GACATACTAAAATTCAGT-ACACAGT-ATAAAGTACGGCAGTGTTCTCAATGTCA-GGGGG-ACACCGAG-TTCTAC-T-TCCCACCGT-GTA-AAC-AT-ATCTATG-T-TTACGG-TG--TAAAACGAAG-caacacatgctgctgtccctgactgagagattcaccatggaggatgttagtcagttattgagtgtcatcacagaaatccaaatccaaatcttaacagtaaaacggcaagtagcgatagacgagtgtgtgaaactgacgcccacacctgtattacacgcgtccgtcggtgtgataggagttagtgaagtgtgtcacatatctcgtgtgacgtcagaccggatctgggtatctggtggtgattacaatattatcttgacagacacaacaggagacactatagactgtgtggcagatataataccaaaaggaccacacacagtgaacagttctggtgaactgatttatatagacaggaaacataacatcaacaaactgtcggtagacaataaaatagtcaccaccctgtttgagagatctacatcaccatggaaaccatggggggtgtattgctccccattcacaggagatctgtttgtcgggatgtataaatataaccctgatacagaaacatggacaggcaagataaaccggtacaacagtacaggtcaacacatactgaccatacatcacaacaccacaggtaaaatacggaatag
gi|5 : acacttCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAAT-ATAAGGTACAACAATGTTGTCAATGCCA-GGGG--ACACTGAG-TTCTAC-TGTCACA-CGT-GTA-AAC-ATGATCTGTG-T-TTACTG-TG--TAAAGAGAGA-CATGTCA-T--GGA-TC---TA-CAT-A----CCAAGCA----C--CA-TGAA-GTT--GTG-ATT-T--ACC-GT-GAAAA---GTTTAG--TT-ACATCCCCAT-ACAAGATATC-TGTGTTAGACACCCAGACAGGATCTATTTTATGTCTTGT-CAGTCGTGT---CAAATTT-CTGCC-TGTGTCCGATGTTT-AGAGCACCGA--AAACACCAACTT-CTGAA-CATTAGAACAGCCT-AT-CAAACA--AAGC-----GA-CAA--CAACAC-C-GAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAA-CCGTCTTGTT-CTTTTATCGGGAATCCAAACTGAT-ATCCAAA-CT-------------TGTCCCCCACAAATCTGTC-ACCG--TCAGTCACAACTG-ATGTTAGCAAAA-AG-CCAGAGA-CTG-AGCATCTGATTGAA-CA-TGT-GTATGC-GATGTTAAA---CAA-G---ATGCAGATGTTTATTGA-TTGC-TAGAA-T-------GC-AGATGAGAAAAA--TGAAC-AGACA-------CCTCACCCG-AATACAAAACT--ATGAAGACAGATATGAA--AATCAGC-TA-ACA-AAGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAG--ATA--------------------AAGGACACCCCTAATATTCCACAACACCTGCTGCTG-TCCCTGACTGAGGGAT-GAACTTGGAGGATGTGAGTCTGTC-AT-TGGGAG-G-AATCCCAGAAATCCAAAT----GA-C--AT-CAAGA--A-A---GCAAGAAATTGG-AA-TAG-ACAAGTGTGTAAA-ACTGATG-TCCACA-CCAG-TATTACAC---AC-GTC-T-CTCTGTG--TGACAGTTATGA-T--T------GATGT----TT-TCACA-TCTC--TGG-AGTGA--AATCAGACTCTTT-CTGGGTAT-CT-G----ATG-AA---GA---TG-A--TATCATCT---T-ACAAG-TAT-AAAAGAA----GACGC---------TATGTACCGT--GTGACAGAT--T-AACACC---ATTGTCTAT----AGGAA----TACACACAGTGAACACTTCTGGTGACCTGCTTTTTA-TAGACA-----AT--G-AA--TATAACAT--ATGC-AAACT-GCC-TAT---AGACAG-TGAAAC--AG-TCAACACACT-GTTAGAGA--GAC-----CATCACCATGGCGACCACAGTGTGTAT--ACTGC--TCTCCGTCTA-CTG-ATGATC-TGATGGTCG-GGATG------TAGA-A--ACT--ATCAAA----CAGA------TACAGG-CAAGAT---AGCCCGGTACAAC---ACA-----------TTT-TGA-CAATGCA-ACACAAA--CGACA-C-CGGTCAattattaacagaaaaaaccacaaatatcaccatgttaggttttgtttaac
gi|9 : ttCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAAT-ATAAGGTACAACAATGTTGTCAATGC----GGGG-ACACTGAG-TTCTAC-TGTCACA-CGT-GTATAAC-ATGATCTGTG-T-TTACTG-TG--TAAAGAGAGA-CATGTCA-T--GGA-TC---TA-CAT-AT---CAA-GCA----C--CA-TGAA-GTT--GTG-ATT-T--ACC-GT-GAAAA---GTTTAG--TT-ACATCCCCAT-ACAAGAGATC-TGTGTTAGACACCCAGACAGGATCTATTTTATGTTCTGT-CAGTCGTGT---CAAATTT-CTGCC-TGTGTCCGATGTTT-AGAGCACCGA--AAACACCAACTT-CTGAA-CATTAGAACAGCCT-AT-CAAACA--AAGC-----GA-CAA--CAACAC-CGGAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAA-CCGTCTTGTT-Cagca
gi|4 : ttAGACACTTCCACATCATGAGACACACAGGGACTCAGTTACACAAT-ATAAGGTACAACAATGTTGTCAATGCCA-GGGGG-ACACTGAG-TTCTAC-TGTCACA-CGT-GTA-AAC-ATGATCTGTG-T-T-ACTGGTG--AAAAGAGAGA-CATGTCA-T--GGAATC---TA-CAT-AATACCAAGC-A----C--CA-TGAAGGTT--GTG-A-T-TT-ACCCGTTGAAAGTG-GTCTAG--TTTACATTCCCCATACAG--AATC-TGT-TTAGACACCCAGACAGGATCAATTTTATGTTCTGT-CAGTCGTGTTCAGAA-TTT-CTGCC-TGTG-CCGATGGTT-AGAGCACCGA--AAACACCAACTT-CTGAAACATTAGAACAGCCTTATTCAA--ACAAAGC-----GAGCAAACCAA-ACAC-GAGAAATTATTG-ACAAACAT---CAGAAGTGAAACT--C-TATAAACCGTCTTGTTTCTTTTATCGGGAATTCCAAACTGATATCCAAAACT-------------TGTCCCCCACAAATCTGTCCACCG--TCAGTCACAACTG-ATGTTAGCAAAAAGC-CCAGAGA-CTGAAGCATCTGATTG-A-CACTGTGGTATGC-GATGTT--AAAAC-AAG---ATGCATATGTTTATTGATT-GC-TAGAA-TGCAG--------ATGAGAAAAA--TGAAC-AGACA-------CCTCACCCGAAT-ACAAAACT--ATGAAGACAGATATGAA-AAATCAGC-TA-ACA-AAGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGGACACCCCTAATATTCCACAAC----------------------ACCTGCTGCTG-TCCCTGACTGAGGGATTGAACTTGGAGGATGTGAGTCTGTC-AT-TGGGAG-G-AATCCCAGAAATCCAAAT----GA-C--AT-CAAGA--A-A---GCAAGAAATTGG-AA-TAG-ACAAGTGTGTAAA-ACTGATG-TCCACA-CCAG-TATTACAC---AC-GTC-T-CTCTGTG--TGACAGTTATGA-T--T------GATGT----TTTCCACA-TCTC--TGG-AGTGA--AATCAGACTCTTT-CTGGGTAT-CT-G----ATG-AA---GA---TG-A--TATCATCT---TTACAGA-TAT-AAAAGAA----GACGC---------TATGTACCGT--GTGACAGATA-T-AACACC---ATTGTCTAT----AGGAA----TACACACAGTGAACACTTCTGGTGACCTGCTTTTTA-TAGACA-----AT--G-AA--TATAACAT--ATGC-AAACT-GCC-TAT---AGACAG-TGAAAC--AG-TCAACACACT-GTTAGAGA--GAC-----CATCACCATGGCGACCACAGTGTGTAT--ACTGC--TCTCCGTCTA-CTG-ATGATC-TGATGGTCG-GGATG------TAGA-A-CTATC-AA---A----CAGA------TACAGG-CAAGAT---AGCCCGGTACAAC---ACA-----------TTT-TGA-CAATGCA-ACAC-AA--CGACA-C-CGGTCA
gi|12 : CAGT-GTAAAGTACGACATTGTT-TCAATGTCACAGGGG-ACACCGAAGTTCTACCTGTCACA-CGT-GTA-AAC--TGCC-TATG-TCTTACTG-TG--TA--GAAAGG-CATGCCAGTCAAGA-TC---TATCA--A----TAACCCAAACAC--CA-TGA---TC--GTG-A-T-TTTACC-GT-GAGAA---GTTTAA--AT-GTATCCCTTT-ACGAGAAAAC-TGTGTCAGACATCCAAACagc
gi|7 : cagT-GTAAAACACGACAATGTTCTCAATGTCA-GGGGG-ATTCCGAG-TTCTAC-TGTCGCA-CGT-GTC-AAT-ATGACCTGTG-T-CTGCAG-TG--TAAAGAGATA-CACGTTA-T--TGT-TC---TA-GGT-T----C--CCCA----CAACA-T-AATGTT--GTG-A-T-TT-ACC-GT-GAGAA---GTTCAA--AT-CCGTGTTCAA-ACAAGAAACC-TGTGCGAGGCATCCAGACATGGTCTATGAAATATTTTGC-CGGCCGTGC---AATGTTC-CTGTG-TGTATGCAATGCTC-AGACCACAGT--GGACATAAAACG-ATGGA-TCTTAAAACAG--T-AT--AC--G--AAGCACTCCGT-CAA--CAACAT-A-GAACAGTCATTC-ATAG-AAT---TAGGGATGAAAGTCTC-TATAA-CTGCCATATC-CTCCTGACAGGAATCGAAACGG---ATTTAAA-CA-------------CGTGTCATGCAAACATCTC-ACAGATTCAGAAAAA---G-ATGTCAATAAAA-TC-TCGGAGA-ATAAAG
gi|17 : AATGTCA-GGGGG-ACACCAAG-TTCTAC-TGTCTCA-CGT-GTA-AAC-ATGActtca
gi|14 : CACA-CGTTGTA-AAC--TGATTTGTG-T-TTACAT-CG--TAAAGA-AGA-CAT-----T--G-A-TCAAATA-T-T-A----CCATACA----C--CA-TGGATGTTGTATGTA-T-T--GT--GT-GAGAT---GTTTAA--CT-ACATTCCCCG-ACAAG--ATA-TGTGTCAGACATCCGAAC
gi|16 : A-CAT-A----CCATACG----C--CA-TGA-TGTG--ATG-----T--ATT-GT-GAGAT---GTTTAA--CT-ACGTTCCCAG-ACAAGAAA---TGTGTCAAACATCCAAACtagagatgattt
gi|10 : aaagagataccttgatcaaGAT------------ATCCAAA-GT-------------TTGCCCTCACAAATCTGTC-ACCG--TAAATCACA---G-ATGTCAACAAAA-GC-CCAGAGA-ATGAAGGATCTGATTG-A-CACTGTGGTATTT-GAGGTT--A---CAA-G---ATACTGAGGTTTAGTGA-TTGC-CAGAA-TTCAA-CAAC-AGAAGAGAAAAA--TGAAC-AGACAACTTGTTTTATATC---T--ACAGAACT--ATGAACACAGGTATGAA-CAATCAGC-CA-ACA-GAGCGGTACAATTCCTCTTGTTTATAAAGACCCGTTGTGTACCCCAG--ATA--------------------AAG----------------------ACCAATCG-TG-TCCCCCA------GGT-AAA---GGGCAGTTCTAGTCAGTT-AT-TGAATG-C-CATCACAtag
gi|18 : ggcaggaatccaaactCACAAATCTATC-ATCA--TCGATTACA---G-ATGTCAACAAAA-
gi|1 : --------------------AAA----------------------ACCAGTCG-TG-TCCCCCA------GAT-AAA---GGACA
gi|3 : ctgtattgggatgcataaggtttcataagtacgtctctttattctacagtttaagcatgcaggttttaagtgcgtttattggaaaaaagtcaaacagttattgatttcatatgtttgtcattttcttgtcatccctttatttcctttttctactattaattaataatgtgtgtatctgtctgatacataattagggttgtggtttttttcacttatactttgtactgttcttggtttttttcaagcagattgtattcctagagacccagaatctccacatcatggacacataggactcagtacacagttataaagtacgacattgttctcaatgtcaggggggacaccgagttctactgtcacacgttgtaaaccatgcctgtgctttactgatgagtaagaagaggacaggtcatgaaattaacattaccatccaccaatgatgttgttatctaccgttgagaaaaagtttaaaactatatccccgacaagttctgtgtccgacatccagacaggatctatgaaatgttctgttcagtcgtgtgaacttttctgtcctgtttccgatgttttagatcaccaattatggaccaactaactgaacatagaacagcctatcaaacaaagcgacaacaacacgagaaatcattatacaacacatacagaactgagaatctcgtataactgttgtgtttcctgcaggaattccaaactgataccaaaactttgtccccacaaatctgtcaccgtcaatcacagcatggcaacaaaagctccagagaactgaaggatctgattgaacactgtgggatgttgatactacaacaaatacagaaatttatgtattgcgtagaaatacaaacagccagaagagaaaatattgaaccagaccgcctcacccaccacaaaactgatagaggacagatatgaaacaatcagcacatacaagagtgctcatctcttgtttattAT-GGA---GGAT-GT--TAGTCAGTT-AT-TGAGTG-T-CATCACAGAAATCCAAATCCAAAT-CTTAA-CAGTA--A-AACGGCAAG----TAG-CGATAG-ACGAGTGTGTGAA-ACTGACG-CCCACA-CCTG-TATTACAC---GC-GTC-C-GTCGGTG--TGATAG--GAGT-TAGT------GAAGT----GTGTCACA-TATC--TCG-TGTGA--CGTCAGACCGGAT-CTGGGTAT-CT-G----GTG-GT---GATTACA-A--TATTATCT---TGACAGA-CAC-AACAGGA----GACAC---------TATAGACTGT--GTGGCAGATA-T-AATACC---A-------------AAAGGA-CCACACACAGTGAACAGTTCTGGTGAACTGATTTATA-TAGACA-----GG--A-AA--CATAACATCAAC---AAACT-GTC-GGT---AGACAA-TAAAAT--AG-TCACCACCCT-GTTTGAGA--GATC--TACATCACCATGGAAACCATGGGGGGTGT--ATTGC--TCCCCATTCA-CAG-GAGATC-TGTTTGTCG-GGATGTATAAATATA-A-CCCTG-AT---A----CAGAAACATGGACAGG-CAAGAT---AAACCGGTACAACAGTACAGGTCAACA-CATAC-TGA-CCATACA-TCAC-AA--CACCA-C-AGGccccctatatctttcaacaacactgctgcgtccttgactgaggattcaaacatggagatgtgagtcagttgattgagggggaatccgaaatccatatattcaacaggaaacgacaagtaggaaatagacgagtggttgaaactgacgatccacaacctgctcttaacagagtcgtcatagtctgcttgacagtgtgttgtattactggagtttacgtagtttatacctagctgtgaaccgtcagaccgggtctgggtattctgcctcaagacgacaaaatctcacctgcatgacgacacaacagagacactatacaccgttagtgacaactagaaccagggttattagcaggaggagctacaccagtcgacagttcggtgaactgatttataataacagtaatgatacacatcaatctaaaactgttcatcatagacaaataaaacatttaccacatttgttagagagctacatccacatggagcccattcagtgtgtttactgtccccgtccaactagagatctgaatcgcggacgtttaaacagtgcatacactgacaggcaagaaataccgtcaacagtacaggacaacatggtactactatacaatacaacaacactcggtca
gi|1 : agtatatgcatgttaatacaaaatgacgaggtgtcttatactttaaaatttctgtttattttcagcagacccagtcctccacatcatggacacactaggacgccttactcaatataaagtacgggagtgttgtcaatgccagggggacaccgagttctactgccacacgtgtaaatatgatctgtgtttccagtgtaaagagatacatgtcattgatctacataccaaagaccacaatgttgtgatttaccgtgagaagtttaactacatccccagacaagagatctgtgtccaacatccggagagggtctatgaaatgttctgtcagtcgtgtgaactttctttctgtttccaatgtttagagcaccaaaaacaccaaataatggacattagaacagcctatcaaagaaagcggcaacaacaccgggaaatcattaacagcatcagaagtgagactctctataactgtcgtgttctcctggcaagaatccaaacttatattcaaacttgtccgccgcaaatatggcaccgttcatcacaactgatgccaacaaaagcccagatattgaagaatctgattgatactgtagtatgtgatactagagcaagatgcagaggtttattgattgcaaaaatacaacaacaaaagagaaaaatgaagagacacctcactaacatacagaactatgaagacaggtatgaacaatcagccaacaaagcggtacaattccttttgtttatgaagacctatcgtatcccccagaaaaaggccacccctgatcttccacaacacatgctgctgtccctgactgagagattcaccAGTCAGTTGAT-TGAGGG-GGAATC-C-GAAATCCATAT----ATTC--AA-CAGGA--A-A-CGACAAG----TAGGAAATAG-ACGAGTGGTTGAA-ACTGACGATCCACAACCTGCTCTTA-ACAGAGTCGTCATAGTCTGCT--TGACAG---TGTGTTGTATTACTGGAGTTTACGTAGTTTA-TACC--TAGCTGTGAACCGTCAGACCGGGT-CTGGGTATTCT-GCCTCAAG-AC---GA---CA-AAATCTCACCTGCATGAC-GA-CAC-AACAG-A----GACAC---------TATACACCGTTAGTGACAACTA-G-AAC--C---AGGGT-TATTAGCAGGAGGAGCTACAC-CAGTCGACAGTTC-GGTGAACTGATTTATAATA-ACA-----GT--A-ATGATACA-CATCAATCTAAAACT-GTT-CATCATAGACAAATAAAAC--AT-TTACCACATTTGTTAGAGA--G--C--TACATCCACATGGAGCCCATTCAGTGTGTTTACTGT---CCCCGTCCAACTA-GAGATC-TGA--ATCGCGGACG------TTTA-AACAGTGCAT---A----CACT------GACAGG-CAAGAA---ATACCG-T-CAACAGTACAGGACAACATGGTAC-T-A-CTATACA-ATAC-AA--CAACA-CTCGGTCAtaaaatacggaatag
gi|6 : ctgtattgggatgcataaggtttcataagtacgtctctttattctacagtttaagcatgcaggttttaagtgcgtttattggaaaaaagtcaaacagttattgatttcatatgtttgtcattttcttgtcatccctttatttcctttttctactattaattaataatgtgtgtatctgtctgatacataattagggttgtggtttttttcacttatactttgtactgttcttggtttttttcaagcagattgtattcctagagacccagaatctccacatcatggacacataggactcagtacacagttataaagtacgacattgttctcaatgtcaggggggacaccgagttctactgtcacacgttgtaaaccatgcctgtgctttactgatgagtaagaagaggacaggtcatgaaattaacattaccatccaccaatgatgttgttatctaccgttgagaaaaagtttaaaactatatccccgacaagttctgtgtccgacatccagacaggatctatgaaatgttctgttcagtcgtgtgaacttttctgtcctgtttccgatgttttagatcaccaattatggaccaactaactgaacatagaacagcctatcaaacaaagcgacaacaacacgagaaatcattatacaacacatacagaactgagaatctcgtataactgttgtgtttcctgcaggaattccaaactgataccaaaactttgtccccacaaatctgtcaccgtcaatcacagcatggcaacaaaagctccagagaactgaaggatctgattgaacactgtgggatgttgatactacaacaaatacagaaatttatgtattgcgtagaaatacaaacagccagaagagaaaatattgaaccagaccgcctcacccaccacaaaactgatagaggacagatatgaaacaatcagcacatacaagagtgctcatctcttgtttattaaaaccagtcgtgtcccccagataaaggacaccccctatatctttcaacaacactgctgcgtccttgactgaggattcaaacatggagatgtgAGTCAATT-ACGTAGATGGT-ATTCACAGAA-TCCAAATC---GT-C--AATCAAGATCACAACGACAA-----TAG-AAT-AGTACGAGTGTGTGAATATTGACG-TCCACA-CCTG-TATTAC------C-GCT-T-AATTGCAATTGGCAG--ATGT-TAGTTC----GTTGT----GT-TTACAATATC--TGG-TG-AA--CGTCAGACCGGGT-CTGTTTAT-CT-G----ATT-AT---AA---AA-A--TTTC-TCT---TGACAGAACACCAACAGGA----GACAC---------AATACACCGT--GTGAC---TATT-AACATC---ATGGTATAA----ATAAG------CACAT-GTGAA-AGTTCTGGTGAACTGATTTAT--TAGATAGGAACGTAAG-AT--T-CAA-ACCA-----AAACTGGTCTTCT---AGACAG-TAAAAC--AGTTTACCACACT-GTT--AGA--AGCTCCTACATCA
gi|15 : aaatcagttcgtgtccccaagaaaaggtaaactgtatctgtgcccgcaacctcctgtttgctgacctgattgatgaataacatagacgatgtgaCA-CCTG-TATTACAC---AC-GTC-C-GTCTGTG--TGCCAA--ATGT-TAAT------TCTGT----GTATCACA-TATA--TGG-TGTTA--TGTCAGACCGAGT-CTGGGTAT-CT-G----GTA-GA---CA---CA-G--TCTCATCT---TGACAGA-CAC-AACAGtatgaggcct
gi|8 : TG--TGAGAG--ATAT-TAGT------TATGT----GGCCCACA-TTTCCCTCG-TCT----CAACAGACGAGCT-TTGGGTGA-GT-G----ATT-TTTTTGC---CA-G--GCTTATCT---TAGCTGA-CAC-AACAGGT----ACCAC---------TCTAAATCGC--CTGACAGATA-CGGACCCCAGAATTATCTAT--------GGA-TTTCACACGACCAGTAGTGCGGGTGAGCTGTTTTACA-TAGACA-----GT--GCAC--T-TAACATCGGC---AAACT-CTC-TAC---TGCCGA-CAATGCCAAG-T--CCATACT-AATAAAGAATGA-----ACA--ACCATGGATACCA--AATTGTGT--CGTGTGCTCCCCCTCCA-CTG-GAGATC-TGCTGGTCG-GGATG------AAGA-A-AGTTG-ATC--ATTCCCAAA------AACAGGCCAAAAT---AAAGAGATACAAAAGCACAGGCCGACA-CGTCC-AGA-CCGTGGA-A-AC-GAACCAA-G-C-CGGG
gi|9 : GGTGCTTGATAT-GTAG----ATCCAT---GA---CATG--TCTC-TCT---T-------TAC-A-CAGTA----AACACAGATCATGTTATACAC-GT--GTGACAG-TA-G-AACTCgatagaatatacagttt
gi|12 : ttcagacactccacatcatggacacacagggactcagtacacaatataaggtacaacaatgttgtcaatgcggggacactA-CAC-AGTAAGACATAGGCAG---------TTTACAC-GT--GTGACAGGTA-G-AACTTC---GGTGTatgaagttgtgatttaccgtgaaaagtttagttacatccccatacaagagatctgtgttagacacccagacaggatctattttatgttctgtcagtcgtgtcaaatttctgcctgtgtccgatgtttagagcaccgaaaacaccaacttctgaacattagaacagcctatcaaacaaagcgacaacaacaccggagaaattattgacaacatcagaagtgaaactctttataaccgtcttgttc
gi|13 : cagcagtgtaaagtacgacattgtttcaatgtcacaggggCCTTGGCAACCATGGA-TGTTG--ACTG----ACCCGTC-G-CTGCGAGATTATGATGGTCG-GGATG------T-TATA-TACTG-AT---A----CAGA------GACAGG-CA-GATTAAA---CGGTACAACAGTACAGGACAACA-CGTGCTTGATCTATACATGCAC-GA--CAACATC-TGGTCACAAACTCTAagaaaggcatgccagtcaagatctatcaataacccaaacaccatgatcgtgattttaccgtgagaagtttaaatgtatccctttacgagaaaactgtgtcagacatccaaac
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 1 2 1 2 2 2 1 3333333 1 11 2 1 2222 1 1 33333 1 222 88888888888 1 11 11 11111 111 11 2 11111 111 1 3333 11 222 333333 1 111 5555555555555555555555 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333 4444444 1111 111 1111111 111111111 1111 11111111 11 1111111 1111 33333 111 1111111 2222222222 1111 111111 2
lowQualScore : 5 5 2 0 5 0 0 0 2 5 2222222 5 88 0 66 5 4444 5 5 3 0 0 0 44444 0 3 1 1 1 111 33333333333 1 11 1 0 33 3 22 3 4 4 5 5 1 5 4 3 6 8 4 4 3 3 3 3 3 4 4 55 4 55 4 4 999999 777 4 33333 55 22 4 88 4 4 8 55 777 55 55 4 4 44 33 333 5 000 22 5 3 5 77 0 66 5 5 5 8 44444 5 77 5 5 5 5 000 5 1 5 6 1 1 2222 33 5 77 0 2 5 66 666 5 5 5 1 6 1 6 1 77 555555 1 5 7 6 6 666 6 888 6 3333333333333333333333 6 6 6 2 6 6 6 1 6 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 1 22 5 5 5 5 1 22 5 4 0000 99 6 99 6 7 5555555 3 6 6 6 5 5 2222 111 1 66 5555555 1 777777777 5 1 5 0 66 5 1 66 1 5 0000 33333333 888 1 888 1 0 5 5 1 77 22 8888888 44 3 4444 5 1 1 5 1 5 1 0 5 5 4 33333 5 000 5 5 77 5 1 5 9999999 44 77 1 77 3 77 5 5 5 4444444444 44 5 5 2222 666666 5 55 4 0 8 5 1 5 5 1 5 5 0 6 6 3 2
lowQualScore : . . . . . . . . . . ....... . .. . .. . .... . . . . . . ..... . . . . . ... ........... . .. . . .. . .. . . . . . . . . . . . . . . . . . . . . .. . .. . . ...... ... . ..... .. .. . .. . . . .. ... .. .. . . .. .. ... . ... .. . . . .. . .. . . . . ..... . .. . . . . ... . . . . . . .... .. . .. . . . .. ... . . . . . . . . .. ...... . . . . . ... . ... . ...................... . . . . . . . . . .................................................................................................................... . . .. . . . . . .. . . .... .. . .. . . ....... . . . . . . .... ... . .. ....... . ......... . . . . .. . . .. . . .... ........ ... . ... . . . . . .. .. ....... .. . .... . . . . . . . . . . . ..... . ... . . .. . . . ....... .. .. . .. . .. . . . .......... .. . . .... ...... . .. . . . . . . . . . . . . . . .
lowQualScore : 5 5 5 0 5 0 0 0 5 0 5555555 0 55 0 00 5 0000 0 5 0 7 7 7 77777 7 3 0 0 0 000 00000000000 0 77 0 0 88 2 00 2 2 2 7 7 0 7 4 0 7 0 0 0 6 6 6 6 6 0 0 00 0 55 0 0 222222 000 0 99999 55 00 0 88 0 0 0 55 000 55 55 0 0 99 77 000 7 000 33 7 0 7 99 7 77 7 7 7 6 33333 7 99 7 7 7 7 000 7 0 7 6 4 4 3333 66 7 99 7 0 0 99 000 0 7 7 0 7 0 7 0 33 000000 0 5 3 7 7 777 7 333 7 0000000000000000000000 7 7 7 5 7 7 7 0 7 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 4 11 7 7 7 7 0 66 7 9 8888 22 7 22 7 3 5555555 5 7 7 7 7 7 1111 999 4 99 6666666 4 555555555 0 0 0 2 99 0 4 99 4 0 6666 66666666 999 4 888 4 4 0 0 7 99 44 0000000 44 0 4444 7 4 0 7 4 7 0 1 7 7 3 00000 7 000 7 7 99 7 7 7 7777777 77 99 0 44 0 44 7 7 7 1111111111 00 7 7 1111 444444 7 33 3 7 6 7 0 7 7 0 7 7 7 7 7 0 5
consensus : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTAT--GT-TAATA-CATAATTACG-GNTGTG----------CTTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTAC-NG-T--GTAAAGAGA-GACATGTCA-T--G-G-ATC---TA-C---A-TA--CCANACACC-ATGAATGTTGTGATTT-A-CCG-TG--AG---A--AGTTT--AA-CTACA-TCCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTG-GACATTAGAACAGCC-TA-TCAAACAAAG-----CGA-CAA--CAACAC-C-GAGAAATCATTG-AC-AACAT---CAGAAGTGAGACTCTC-TATAACCGTCGTG-TTCTCCTGGCGGGAA-TCCAAACT-G--AT--CC-AAA--CTTGTCCCCCACAAATCTGT-CACCG--TCAATCACAACTGATGTCAAC-AAAAGC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA--CAAGATGCAGAGGTTTATTGATTTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-A-CTT--TCCT-CACCCG-ATACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAA-G----------------------AC-----------------------CCGCCG-TG----TCC-----------------CCGACT----GA-----T--GA-------A---CN-TGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----GTC--AA-CAAGA--A-AACGGCAAG----TA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-TAACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTG-AATATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGGTGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
Reference ( family-561 ) : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAGTGTGTGCATCTGTCTGATA-CANAATNANG-GNTGTGGTTTTTTTCNCNTATACTTTGNANTG-TCT--GTTTATTTTC-GGCAGATTGTATTCCTAGAGGCCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACAATGTTGTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTAC-NG-T--GTAAAGAGA-GACATGTCA-T--G-G-ATC---TA-C---A-TA--CCANNCACC-ATGAATGTTGTGATTT-A-CCG-TG--AG---A--AGTTT--AA-CTACA-TCCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATNNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTG-AACATTAGAACAGCC-TA-TCAAA-AAAG-----CGA-CAA--CAACAC-C-GAGAAATCATTG-AC-AACAT---CAGAAGTGAAACTCTC-TATAACCGTCNTG-TTCTCCTGNCGGGAA-TCCAAACT-A--AT--CC-AAA--CTTGTCCCCCGCAAATCTGT-CACCG--TCAGTCACAACTGATGTCAAC-AAAAGC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTT--AA--CAAGATGCAGANGTTTATTGATTTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-A-CTT--TCCT-CACCCG-ATACAAAACT-AT-GAAGACAGATATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAA-G----------------------AC-----------------------CNGCCG-TG----TCC-----------------CCCA------GA-----T--GA-------A---CT-TGGACGGTGCGA-GTCAGTT-AT-TG-GGNGNAAT-CACAGAAATCCAAATC---GTC--AA-CAAGA--A-AACGGCAAGAAATTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGAN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACACTATACACCGT--GTGACAGATA-NAACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGNTTTAT-ATAGACAGTG-ANTATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGGNGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGATG------TA-NAACNCTG-AT-A----CAGA------GACAGG-CAAGATAGACCGGTACAACAGTACAGG-CAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACAAACTCTA
gi|1 : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAATGTGTGTATCTGTCTGATA-CATAATTAGG-GTTGTGGTTTTTTTCACTTATACTTTGTACTGTTCTTGGTTT-TTTTCAAGCAGATTGTATTCCTAGAGACCCAGAA-TCTCCACATCATG-GACACA-TAGGACTCAGT-ACACAGTTATAAAGTACGACATTGTTCTCAATGTCAGGGGGGACACCGA-GTTCTAC-TGTCACA-CGTT-GTA-AACCATG-CCTGTGCT-TTAC-TGATGAGTAAGAAGAGGACAGGTCA-T--GAA-ATT---AA-C---ATTA--CCATCCACCAATG-ATGTTGTTATCT-A-CCGTTG--AGAAAA--AGTTTAAAA-CTATA-TCCCC-GACAAG--TTCTGTGTCCGACATCCAGACAGGATCTATGAAATGTTCTGTTCAGTCGTGT---GAACTTTTCTGTCCTGTTTCCGATGTTTTAGATCACCAATTATGGACCAACTAACTG-AACA-TAGAACAGCC-TA-TCAAACAAAG-----CGA-CAA--CAACA--C-GAGAAATCATTATAC-AACACATACAGAACTGAGAATCTCGTATAACTGTTGTG-TT-TCCTG-CAGGAATTCCAAACT-G--ATA-CC-AAAACTTTGT-CCCCACAAATCTGT-CACCG--TCAATCACAGC--ATGGCAAC-AAAAGCTCCAGAGAACTGAAGGATCTGATTGAACAC-TGTGGGATGTTGATACTACAA--CAA-ATACAGAAATTTATGTA-TTGCGTAGAAATACAAACAGCCAGAAGAGAAAATATTGAACCAGAC-----C--GCCT-CACCCA-CCACAAAACTGATAGAGGACAGATATGAAACAATCAGCACATACAAGAGTGCT-CA---TCTCTTGTTTATTAAAACCAGTCGTGTCCCCCAGATAAAGG----------------------ACACCCCCTATATCTTTCAACAACACTGCTG-CG----TCC-----------------TTGACTGAG-GA-----TTCAA-------A---CA-TGGA-GATGTGA-GTCAGTTGAT-TGAGGGGGAAT-C-C-GAAATCCATATA---TTC--AA-C-AGG--A-AACGACAAG----TAGGAAATAG-ACGAGTGGTTGAA-ACTGACGATCCACAACCTGCTCTTA-ACAGAGTCGTCATAGTCTGCT--TGACAGTGTGTTGTATTACT--GGAGTTTACGTAGTTT----ATACC--TAGCTGTGAACCGTCAGACCGGGTCTGGGTATTCTGCCTCAAGAC---G---ACAAAATCTCACCTGCATGAC-GA-CAC-AACA-GAGACACTATACACCGTTAGTGACAACTA-GA--ACC---AGGGTTATTAGCAGGAGGAGCTACAC-CA-GTCGACAGTTC-GGTGAACTGATTTATAATA-ACAGTA-ATGATACACA-TCAAT-CTAAAACT-GTTCAT-CATAGACAAATAAAAC--AT-TTACCACATTTGTTAGAGA--G--CTACATCCACATGGAGCCCATTCAGTGTGT-TTACTG-TCCCCGTCCAACTA-GAGATC-TGA--ATCGCGGACGT-----TT-AAACAGTGCAT-A----CACT------GACAGG-CAAGAAATACC-GT-CAACAGTACAGGACAACATGGTAC-T-A-CTATACA-ATAC-AACAACA-CTCGGTCA
gi|10 : GGCAGGAA-TCCAAACT-G--ATATCC-AAA--GTTTGCCCTCACAAATCTGT-CACCG--TAAATCACA---GATGTCAAC-AAAAGC-CCAGAG-AATGAAGGATCTGATTG-ACAC-TGTGGTATT-TGAGGTT--A---CAAGATACTGAGGTTTAGTGATT-GC-CAG-AATTC-AACAA-CAGAAGAGAAAA-A-TGAA-CAGACAA-CTTG-TTTTATATC----TACAGAACT-AT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTTGTGTACCCCAGATAAA-G----------------------AC-----------------------CAATCG-TG----TCC-----------------CCCA------GG-----T--AA-------A-------GGGCAGTTCTA-GTCAGTT-AT-TG-AATGCCAT-CACA
gi|11 : TG-TCT--GTTTATTTTC-GGCAGATTGTATTCCTAAAGGCAGTGAT-CATCCACATCATG-GACATACTAAAATTCAGT-ACACAG-TATAAAGTACGGCAGTGTTCTCAATGTCA-GGGGGACACCGA-GTTCTAC-T-TCCCACCG-T-GTA-AA-CAT-ATCTATG-T-TTAC-GG-T--GTAAA
gi|12 : acacttCAG-TGTAAAGTACGACATTGTT-TCAATGTCACAGGGGACACCGAAGTTCTACCTGTCACA-CG-T-GTA-AA-C-TG-CCTATG-TCTTAC-TG-T--GTA--GAAA-GGCATGCCAGTCAA-G-ATC---TA-TCA-A-TAACCCAAACACC-ATGA---TCGTGATTTTA-CCG-TG--AG---A--AGTTT--AA-ATGTA-TCCCTTTACGAGAAAACTGTGTCAGACATCCAAACacgaagattattaacagaaaaaaccacaaatatcaccatgttaggttttgtttaac
gi|13 : cagCCTTGGCAACCA--TGGA-TGT-TGACTGA--CCCGTC--GCTGCGAGATTATGATGGTCG-GGATG------TT-ATATACTG-AT-A----CAGA------GACAGG-C-AGATTAAACGGTACAACAGTACAGGACAACAC-GTGCTTGATCTATACATGCAC-GACAACATC-TGGTCACAAACTCTA
gi|14 : CACA-CG-TTGTA-AA-C-TGATTTGTG-T-TTAC-AT-C--GTAAAGA-A-GACAT-----T--G---ATCAAATA-T-----TA--CCATACACC-ATGGATGTTGT-ATGT-A-TTG-TGTGAG---A--TGTTT--AA-CTACA-TTCCCCGACAAG--ATATGTGTCAGACATCCGAACagttat
gi|15 : C-ACCTG-TATTACACA----CGTC--CGTCTGTG--TGCCAA------ATGTTAAT--T------CTGT-GTAT-CACATATA--TGG-TGTTA--TGTCAGACCGAGTCTGGGTA-TCTG----GTAGA---C---AC--AGTCTCATCT---TGACAGA-CAC-AACAGtagagatgattt
gi|16 : AAAGAGA-TAC----C--T--T-G-ATC---AAAC---A-TA--CCATACGCC-ATGA----TGTGATGT-A-TTG-TG--AG---A--TGTTT--AA-CTACG-TTCCCAGACAAGAAA--TGTGTCAAACATCCAAAC
gi|17 : AATGTCA-GGGGGACACCAA-GTTCTAC-TGTCTCA-CG-T-GTA-AA-CATGAtag
gi|18 : CACAAATCTAT-CATCA--TCGATTACA---GATGTCAAC-AAAA
gi|2 : CTGT-TTGGGA-GCATAATGTTTCATAAAGT-CGTCCTCTTCATTTTTACAGTATCAAGAAT-CAC------AGTGC-TTTA--GGTAGAAAAATTCCACAGTT-TTGATC----ATGTTTATCATTTTCTTGTCATCC-TTTATTTCCTTTTCCTAC-ATTGATTACTAATATGTGTAT--GT-TAATAACATTATTATG--ATGTG---------CCATTTACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACAGCATG-GACACACTAGGACTCAGT-ACACAG-TATAAAGTACGACATTGTTCTCAATGCCA-GGGGGACACCGA-ATTCTAC-TGTCACA-CG-T-GTA-AA-CATGACATGTG-T-TTAC-TC-T--GCAAAGAGA-GGCATGTCA-T--G-G-ATC---TA-C---A-TA--CAATCCACC-ATGAATGTTATGATT--A-CCG-TG--AG---A--AGTTT--AA-CTACA-TCCCCCGACAAGAAATTTGTGCCCGACATCCAGACAGGATCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTG-TCTGTTTCCGATG-TTTAGAGCACCGA--AAACACCAAAT-ATTG-GACATTAGAACAGCC-TA-TCAAA-AA-G-----CGA-CAA--CAACAC-C-GCGAAATCATTG-AC-AACAT---CAGAAGTCAGACTATC-TATAACTGTCGTG-TTCTCCTGGCAGGAA-------------AT--CC-AAA--CTTGTCCCCCACAAATCTGT-CACCG--TCAATCACA---GATGTCAAC-AAAAGC-CCAGAG-ACTGAAGGATCTGATTG-ACAC-TGTGGTATG-TGATGTT--A---CA-GATACAGAGGTTTATTGATTTGC-TAG-AATAC-AACAA-CAAAAGAGAAAA-C-TGAA-CAAAC-AACTTGTTCTT-CATC---A-ACAGAACT-CT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCAGTCGTGTCCCCCAGAAAAA-G----------------------AC-----------------------CCGCCG-TG----TCC-----------------CCCA------GA-----T--AA-------A-------GGACAGTCCTA-GTCAGTT-AT-TA-AATGCAAT-CACAGAAATCCAACT----GTC--AA-CAGGA--A-AACGGCAAG----TA-GAATTAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTA-TATTACACG----TGTC--TGTCTGTG--TGACAG------ATGTTCGT--G------AAGT-GTAT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGATA-TCTG----ATGGT---G---AC--AATCTCATCT---TGGCAGA-CAC-AACAGGAGACACTATACACCGT--GTGACAGATA-CAACTCC---A---TTGTATATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTG-ATTACA-ACA-TCAAT----AAACT-GT---C-TATAGAC-AATAAAAC--AG-TCACCACA-CTGTTAGAGA--GGCTTACATCACCATGGTTACCA--CGGAGTGT-GTACTGTTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------CA-TAACACTG-AT-A----CAAA------GACAGG-CAAGATATCCCGGTACAACAGTACAGGACAACAG-GTAC-TGA-CTATACA-GCAC-GACAACA-C-CGGGCACACACTGTA
gi|3 : AGTATATGCAT--GT-TAATA-CAAAATGACGAGGTGT-----------CTTATACTTTAAAATT-TCT--GTTTATTTTC-AGCAGA---------------CCCAG-T-CCTCCACATCATG-GACACACTAGGACGCCTT-ACTCAA-TATAAAGTACGGGAGTGTTGTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGCCACA-CG-T-GTA-AA-TATGATCTGTG-T-TTCC-AG-T--GTAAAGAGA-TACATGTCA-T--T-G-ATC---TA-C---A-TA--CCAAAGACC-AC-AATGTTGTGATTT-A-CCG-TG--AG---A--AGTTT--AA-CTACA-TCCCCAGACAAGAGATCTGTGTCCAACATCCGGAGAGGGTCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTT-TCTGTTTCCAATG-TTTAGAGCACCAA--AAACACCAAAT-AATG-GACATTAGAACAGCC-TA-TCAAAGAAAG-----CGG-CAA--CAACAC-C-GGGAAATCATTA-AC-AGCAT---CAGAAGTGAGACTCTC-TATAACTGTCGTG-TTCTCCTGGCAAGAA-TCCAAACTTAT-AT--TC-AAA--CTTGTCCGCCGCAAATATGG-CACCG--TTCATCACAACTGATGCCAAC-AAAAGC-CCAGAT-ATTGAAGAATCTGATTG-ATAC-TGTAGTATG-TGATACT--AGAGCAAGATGCAGAGGTTTATTGATT-GC-AAA-AATAC-AACAA-CAAAAGAGAAAA-A-TGAA-GAGAC-A-CCT--CACT-AAC----ATACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTTTTGTTTATGAAGACCTATCGTATCCCCCAGAAAAA-G----------------------GC-----------------------CACCCC-TGATCTTCCACAACACATGCTGCTGTCCCT------GAC----T--GAGAGATTCA---CCATGGAGGATGTTA-GTCAGTT-AT-TG-AGTGTCAT-CACAGAAATCCAAATCCAAATCTTAA-CAGTA--A-AACGGCAAG----TA-GCGATAG-ACGAGTGTGTGAA-ACTGACG-CCCAC-ACCTG-TATTACACG----CGTC--CGTCGGTG--TGATAG------GAGTTAGT--G------AAGT-GTGT-CACATATC--TCG-TGTGA--CGTCAGACCGGATCTGGGTA-TCTG----GTGGT---GATTAC--AATATTATCT---TGACAGA-CAC-AACAGGAGACACTATAGACTGT--GTGGCAGATA-TAATACC---------------AAAAGGA-CCACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGGA-AACATA-ACA-TCAA--C--AAACT-GT---C-GGTAGAC-AATAAAAT--AG-TCACCACC-CTGTTTGAGA--GATCTACATCACCATGGAAACCA--TGGGGGGT-GTATTGCTCCCCATTC-ACAG-GAGATC-TGTTTGTCG-GGATGTATAAATA-TAACCCTG-AT-A----CAGAAACATGGACAGG-CAAGATAAACCGGTACAACAGTACAGGTCAACAC-ATAC-TGA-CCATACA-TCAC-AACACCA-C-AGGT
gi|4 : AGACACTTCCACATCATGAGACACACAGGGACTCAGTTACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG---TTACTGG-T--GAAAAGAGA-GACATGTCA-T--G-GAATC---TA-CATAA-TA--CCAAGCACC-ATGAAGGTTGTGATTT-ACCCGTTG--AA---AGTGGTCT--AGTTTACATTCCCCATACA--GAATCTGT-TTAGACACCCAGACAGGATCAATTTTATGTTCTG-TCAGTCGTGTTCAGAA--TTTCTG-CCTGTG-CCGATG-GTTAGAGCACCGA--AAACACCAACT-TCTGAAACATTAGAACAGCCTTATTCAAACAAAG-----CGAGCAAACCAA-ACAC-GAGAAATTATTG-ACAAACAT---CAGAAGTGAAACTCTA-TA-AACCGTCTTGTTTCTTTTATCGGGAATTCCAAACT-GATAT--CCAAAA--CTTGTCCCCCACAAATCTGTCCACCG--TCAGTCACAACTGATGTTAGCAAAAAGC-CCAGAG-ACTGAAGCATCTGATTG-ACAC-TGTGGTATG-CGATGTTAAAA--CAAGATGCATATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAATACAAAACT-AT-GAAGACAGATATG-AAAAATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAA-GGACACCCCTAATATTCCACAACAC-----------------------CTGCTGCTG----TCC-----------------CTGACT----GAGGGATT--GA-------A---CT-TGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----GAC--AT-CAAGA--A-A---GCAAGAAATT--GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT-TTTC-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---TTACAGA-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGATA-TAACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATG-AATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAGTGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TA-GAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGTA-------------CAACAC-ATTT-TGA-CAATGCA-ACAC-AACGACA-C-CGGTCAaaaatacggaatag
gi|5 : CAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGG-ACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTAC-TG-T--GTAAAGAGA-GACATGTCA-T--G-G-ATC---TA-C---A-TA--CCAAGCACC-ATGAA-GTTGTGATTT-A-CCG-TG--AA---A--AGTTT--AG-TTACA-TCCCCATACAAGATATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTCTTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTG-AACATTAGAACAGCC-TA-TCAAACAAAG-----CGA-CAA--CAACAC-C-GAGAAATTATTG-AC-AACAT---CAGAAGTGAAACTCTT-TATAACCGTCTTG-TTCTTTTATCGGGAA-TCCAAACT-GATAT--CC-AAA--CTTGTCCCCCACAAATCTGT-CACCG--TCAGTCACAACTGATGTTAGC-AAAAAG-CCAGAG-ACTG-AGCATCTGATTG-A-ACATGT-GTATG-CGATGTTA-AA--CAAGATGCAGATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAATACAAAACT-AT-GAAGACAGATATG-AA-AATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAA-GGACACCCCTAATATTCCACAACAC-----------------------CTGCTGCTG----TCC-----------------CTGACTGAGGGA-----T--GA-------A---CT-TGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----GAC--AT-CAAGA--A-A---GCAAGAAATT--GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT--TTT-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---T-ACAAG-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGAT--TAACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATG-AATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAGTGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TAGAAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGTA-------------CAACAC-ATTT-TGA-CAATGCA-ACACAAACGACA-C-CGGTCAagc
gi|6 : tt------GA-----T--GA-------ATAACA-TAGACGATGTGAAGTCAATT-ACGTA-GATGGTATTCACAGAA-TCCAAATC---GTC--AATCAAGATCACAACGACAA-----TA-GAA-TAGTACGAGTGTGTGAATATTGACG-TCCAC-ACCTG-TATTAC-CG----C-TT--AAT-TGCAATTGGCAG------ATGTTAGTTCG------TTGT-GTTTACA-ATATC--TGG-TG-AA--CGTCAGACCGGGTCTGTTTA-TCTG----ATTAT---A---AA--AATTTC-TCT---TGACAGAACACCAACAGGAGACACAATACACCGT--GTGAC---TATTAACATC---A---TGG--TATA-----A-ATAAGCACATGTGAA-AGTTCTGGTGAACTGATTTAT--TAGATAG-G-AACGTA-AGATTCAAA-CCAAAACTGGT---CTTCTAGAC-AGTAAAAC--AGTTTACCACA-CTGTTAGAAG--CTCCTACATCAagca
gi|7 : aaatcagttcgtgtccccaagaaaaggtaaactgtatctgtgcccgcaacctcctgtttgctgacctgatt-TGTAAAACACGACAATGTTCTCAATGTCA-GGGGGATTCCGA-GTTCTAC-TGTCGCA-CG-T-GTC-AA-TATGACCTGTG-T-CTGC-AG-T--GTAAAGAGA-TACACGTTA-T--T-G-TTC---TA-G---G-TT--CCCCACAAC-AT-AATGTTGTGATTT-A-CCG-TG--AG---A--AGTTC--AA-ATCCG-TGTTCAAACAAGAAACCTGTGCGAGGCATCCAGACATGGTCTATGAAATATTTTG-CCGGCCGTGC---AAT-GTTCCTG-TGTGTATGCAATG-CTCAGACCACAGT--GGACATAAAAC-GATG-GATCTTAAAACAG---TA-T--AC-GAAGCACTCCGT-CAA--CAACAT-A-GAACAGTCATTC-AT-AGAAT---TAGGGATGAAAGTCTC-TATAACTGCCATA-TCCTCCTGACAGGAA-TCGAAACG-G--AT--TT-AAA--CACGTGTCATGCAAACATCT-CACAGATTCAG-AAAAA--GATGTCAAT-AAAATC-TCGGAG-AATAAAGCTTCtatgaggcct
gi|8 : G--TGAGAG------ATATTAGT--T------ATGT-GGCC-CACATTTCCCTCG-TCT----CAACAGACGAGCTTTGGGTG-AGTG----ATTTTTTTG---CC--AGGCTTATCT---TAGCTGA-CAC-AACAGGTACCACTCTAAATCGC--CTGACAGATACGGACCCCAGAA---TTATCTAT----GGA-TTTCACACG-ACCAGTAGTGCGGGTGAGCTGTTTTAC-ATAGACAGTGCACT-TA-ACA-TCGG--C--AAACT-CT---C-TACTGCC-GACAATGCCAAG-T--CCATA-CTAATAAAGAATGA---ACA--ACCATGGATACCA--AATTGTGTCGTG-TGCTCCCCCTCC-ACTG-GAGATC-TGCTGGTCG-GGATG------AA-GAAAGTTG-ATCATTCCCAAA------AACAGGCCAAAATAAAGAGATACAAAAGCACAGGCCGACAC-GTCC-AGA-CCGTGGA-A-AC-GAa
gi|9 : tCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGC----GGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTATAA-CATGATCTGTG-T-TTAC-TG-T--GTAAAGAGA-GACATGTCA-T--G-G-ATC---TA-C---A-TA--TCAAGCACC-ATGAA-GTTGTGATTT-A-CCG-TG--AA---A--AGTTT--AG-TTACA-TCCCCATACAAGAGATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTTCTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTG-AACATTAGAACAGCC-TA-TCAAACAAAG-----CGA-CAA--CAACAC-CGGAGAAATTATTG-AC-AACAT---CAGAAGTGAAACTCTT-TATAACCGTCTTG-TTCaccaagccggggatagaatatacagttt
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222
lowQualScore : 1 1 1 1 1 1 1 1 3333333 1 11 1 1 2222 1 1 11 1 1 222 77777777777777 1 11 1 11111 111 11 111 1 22222 11 222 222 2 111 5555555555555555555555 22222222222222222222222222222222222222222222222 2 111111 4444444444444444444 222222 1111 111 1111111 111111111 1111 111111111 111 1111111 1111 33333 111 1111111 2222222222 1111 111111 1
lowQualScore : 5 5 1 5 5 5 5 5 1 5 1111111 5 88 5 22 5 4444 5 5 1 88 3 3 3 111 33333333333333 7 0 33 3 0 3 0 0 5 5 1 5 4 1 5 8 4 4 3 3 3 3 3 4 4 55 4 55 4 4 999999 777 4 33333 55 11 4 88 4 4 8 55 777 55 55 4 4 44 33 222 5 000 22 5 1 5 77 0 66 5 5 5 0 5 77 5 5 5 5 000 5 3 5 1 1 1 00000 33 5 77 0 5 5 333 5 5 5 1 6 1 6 1 77 6 222 1 3 6 6 666 6 888 6 3333333333333333333333 6 6 6 2 6 6 6 1 00000000000000000000000000000000000000000000000 0 0 1 666666 0000000000000000000 7 22 5 5 5 5 1 22 5 4 222222 99 6 99 6 0 3 6 3 6 6 6 5 5 2222 111 1 66 5555555 1 777777777 5 1 5 0 66 5 1 66 1 5 0000 444444444 888 1 888 1 0 5 5 1 1 77 000 8888888 44 3 4444 5 1 1 5 1 5 5 5 4 33333 5 000 5 5 77 5 1 5 9999999 44 77 5 5 3 77 5 5 5 1 4444444444 22 5 5 2222 666666 5 22 2 0 5 1 5 5 1 5 5 0 6 6 1 1
lowQualScore : . . . . . . . . . . ....... . .. . .. . .... . . . .. . . . ... .............. . . .. . . . . . . . . . . . . . . . . . . . . . . .. . .. . . ...... ... . ..... .. .. . .. . . . .. ... .. .. . . .. .. ... . ... .. . . . .. . .. . . . . . .. . . . . ... . . . . . . ..... .. . .. . . . ... . . . . . . . . .. . ... . . . . ... . ... . ...................... . . . . . . . . ............................................... . . . ...... ................... . .. . . . . . .. . . ...... .. . .. . . . . . . . . . . .... ... . .. ....... . ......... . . . . .. . . .. . . .... ......... ... . ... . . . . . . .. ... ....... .. . .... . . . . . . . . . ..... . ... . . .. . . . ....... .. .. . . . .. . . . . .......... .. . . .... ...... . .. . . . . . . . . . . . . . .
lowQualScore : 5 5 0 5 5 0 5 5 0 0 0000000 0 55 5 00 5 0000 0 5 0 33 3 3 7 000 33333333333333 3 0 88 2 0 2 8 8 7 7 0 7 4 0 3 0 0 0 6 6 6 6 6 0 0 00 0 55 0 0 222222 000 0 99999 55 33 0 88 0 0 0 55 000 55 55 0 0 99 77 777 7 000 33 7 0 7 99 7 77 7 7 7 7 7 99 7 7 7 7 000 7 0 7 7 4 4 77777 66 7 99 7 0 0 111 0 7 7 0 7 0 7 0 33 7 222 0 7 7 7 777 7 333 7 0000000000000000000000 7 7 7 5 7 7 7 0 55555555555555555555555555555555555555555555555 7 0 4 666666 1111111111111111111 9 11 7 7 7 7 9 33 7 9 888888 22 7 22 7 7 7 7 5 7 7 7 7 7 1111 999 4 99 6666666 4 555555555 0 0 0 2 99 0 4 99 4 0 6666 888888888 999 4 888 4 4 0 0 4 7 99 111 0000000 44 0 4444 7 4 6 7 4 7 7 7 3 00000 7 000 7 7 99 7 7 7 7777777 77 99 7 7 0 44 7 7 7 4 1111111111 00 7 7 1111 444444 7 33 0 7 7 0 7 7 0 7 7 7 7 7 0 0
consensus : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTAC-NG-T--GTAAAGAGA-GACATGTCA-T--G-G-ATC---TA-C---A-TA--CCANACACC-ATGAATGTTGTGATTT-A-CCG-TG--AG---A--AGTTT--AA-CTACA-TCCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTG-GACATTAGAACAGCC-TA-TCAAACAAAGCGA-CAA--CAACAC-C-GAGAAATCATTG-AC-AACAT---CAGAAGTGAGACTCTC-TATAACCGTCGTG-TTCTCCTGGCGGGAA-TCCAAACT--G--AT--CC-AAA--CTTGTCCCCCACAAATCTGT-CACCGTCAATCA-CAAC-GATGTCAAC-AAAAGC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTT-A-AACAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-A-CTT--TCCT-CACCCG-ATACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGGAC-------------------ACCC---------------------GCCGCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAAC-ATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
Reference ( family-561 ) : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTAC-NG-T--GTAAAGAGA-GACATGTCA-T--G-G-ATC---TA-C---A-TA--CCANACACC-ATGAATGTTGTGATTT-A-CCG-TG--AG---A--AGTTT--AA-CTACA-TCCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTG-GACATTAGAACAGCC-TA-TCAAACAAAGCGA-CAA--CAACAC-C-GAGAAATCATTG-AC-AACAT---CAGAAGTGAGACTCTC-TATAACCGTCGTG-TTCTCCTGGCGGGAA-TCCAAACT--G--AT--CC-AAA--CTTGTCCCCCACAAATCTGT-CACCGTCAATCA-CAACTGATGTCAAC-AAAAGC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTT-A-AACAAGATGCAGAGGTTTATTGATTTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-A-CTT--TCCT-CACCCG-ATACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAG----------------------ACCC---------------------GCCG-TGTCCCCGACT----GA-----TG-----AA---CNTGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGGCAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAAT-ATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
gi|1 : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAATGTGTGTATCTGTCTGATA-CATAATTAGG-GTTGTGGTTTTTTTCAC--TTATACTTTGTACTGTTCTTGGTTT-TTTTCAAGCAGATTGTATTCCTAGAGACCCAGAA-TCTCCACATCATG-GACACA-TAGGACTCAGT-ACACAGTTATAAAGTACGACATTGTTCTCAATGTCAGGGGGGACACCGA-GTTCTAC-TGTCACA-CGTT-GTA-AACCATG-CCTGTGCT-TTAC-TGATGAGTAAGAAGAGGACAGGTCA-T--GAA-ATT---AA-C---ATTA--CCATCCACCAATG-ATGTTGTTATCT-A-CCGTTG--AGAAAA--AGTTTAAAA-CTATA-TCCCC-GACAAG--TTCTGTGTCCGACATCCAGACAGGATCTATGAAATGTTCTGTTCAGTCGTGT---GAACTTTTCTGTCCTGTTTCCGATGTTTTAGATCACCAATTATGGACCAACTAACTG-AACA-TAGAACAGCC-TA-TCAAACAAAGCGA-CAA--CAACA--C-GAGAAATCATTATAC-AACACATACAGAACTGAGAATCTCGTATAACTGTTGTG-TT-TCCT-GCAGGAATTCCAAACT--G--ATA-CC-AAAACTTTGT-CCCCACAAATCTGT-CACCGTCAATCA-CAGC--ATGGCAAC-AAAAGCTCCAGAGAACTGAAGGATCTGATTGAACAC-TGTGGGATGTTGATACT-ACAACAA-ATACAGAAATTTATGTA-TTGCGTAGAAATACAAACAGCCAGAAGAGAAAATATTGAACCAGAC-----C--GCCT-CACCCA-CCACAAAACTGATAGAGGACAGATATGAAACAATCAGCACATACAAGAGTGCT-CA---TCTCTTGTTTATTAAAACCAGTCGTGTCCCCCAGATAAAGGAC-------------------ACCCCCTATATCTTTCAACAACACTGCTG-CGTCCTTGACT----GA-----GGATTCAAA---CATGGA-GATGTGA-GTCAGTTGAT-TGAGGGGGAAT-C-C-GAAATCCATAT----ATTC--AA-C-AGG--A-AACGACAAGTAGGAAATAG-ACGAGTGGTTGAA-ACTGACGATCCACAACCTGCTCTTA-ACAGAGTCGTCATAGTCTGCT--TGACAGTGTGTTGTATTACT--GGAGTTTACGTAGTTT----ATACC--TAGCTGTGAACCGTCAGACCGGGTCTGGGTATTCTGCCTCAAGAC---G---ACAAAATCTCACCTGCATGAC-GA-CAC-AACA-GAGACACTATACACCGTTAGTGACAACTA-G-A--ACC---AGGGTTATTAGCAGGAGGAGCTACAC-CA-GTCGACAGTTC-GGTGAACTGATTTATAATA-ACAGT-AATGATACACA-TCAAT-CTAAAACT-GTTCAT-CATAGACAAATAAAAC--AT-TTACCACATTTGTTAGAGA--G--CTACATCCACATGGAGCCCATTCAG-TGTGT-TTACTG-TCCCCGTCCAACTA-GAGATC-TGA--ATCGCGGACGT-----TT-AAACAGTGCAT-A----CACT------GACAGG-CAAGAAATACC-GT-CAACAGTACAGGACAACATGGTAC-T-A-CTATACA-ATAC-AACAACA-CTCGGTCA
gi|10 : GGCAGGAA-TCCAAACT--G--ATATCC-AAA--GTTTGCCCTCACAAATCTGT-CACCGTAAATCA-CA---GATGTCAAC-AAAAGC-CCAGAG-AATGAAGGATCTGATTG-ACAC-TGTGGTATT-TGAGGTT-A---CAAGATACTGAGGTTTAGTGATT-GC-CAG-AATTC-AACAA-CAGAAGAGAAAA-A-TGAA-CAGACAA-CTTG-TTTTATATC----TACAGAACT-AT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTTGTGTACCCCAGATAAAG----------------------ACCA---------------------ATCG-TGTCCCCCA------GG-----TA-----AA------GGGCAGTTCTA-GTCAGTT-AT-TG-AATGCCAT-CACA
gi|11 : TG-TCT--GTTTATTTTC-GGCAGATTGTATTCCTAAAGGCAGTGAT-CATCCACATCATG-GACATACTAAAATTCAGT-ACACAG-TATAAAGTACGGCAGTGTTCTCAATGTCA-GGGGGACACCGA-GTTCTAC-T-TCCCACCG-T-GTA-AA-CAT-ATCTATG-T-TTAC-GG-T--GTAAA
gi|12 : acacttCAG-TGTAAAGTACGACATTGTT-TCAATGTCACAGGGGACACCGAAGTTCTACCTGTCACA-CG-T-GTA-AA-C-TG-CCTATG-TCTTAC-TG-T--GTA--GAAA-GGCATGCCAGTCAA-G-ATC---TA-TCA-A-TAACCCAAACACC-ATGA---TCGTGATTTTA-CCG-TG--AG---A--AGTTT--AA-ATGTA-TCCCTTTACGAGAAAACTGTGTCAGACATCCAAACacgaagattattaacagaaaaaaccacaaatatcaccatgttaggttttgtttaac
gi|13 : cagCCTTGGCAACCA--TGGATGT-T-G-ACTGA--CCCGTC--GCTGCGAGATTATGATGGTCG-GGATG------TT-ATATACTG-AT-A----CAGA------GACAGG-CA-GATTAAACGGTACAACAGTACAGGACAACAC-GTGCTTGATCTATACATGCAC-GACAACATC-TGGTCACAAACTCTA
gi|14 : CACA-CG-TTGTA-AA-C-TGATTTGTG-T-TTAC-AT-C--GTAAAGA-A-GACAT-----T--G---ATCAAATA-T-----TA--CCATACACC-ATGGATGTTGT-ATGT-A-TTG-TGTGAG---A--TGTTT--AA-CTACA-TTCCCCGACAAG--ATATGTGTCAGACATCCGAACagttat
gi|15 : C-ACCTG-TATTACACA----CGTC--CGTCTGTG--TGCCAA------ATGTTAAT--T------CTGT-GTAT-CACATATA--TGG-TGTTA--TGTCAGACCGAGTCTGGGTA-TCTG----GTAGA---C---AC--AGTCTCATCT---TGACAGA-CAC-AACAGtagagatgattt
gi|16 : AAAGAGA-TAC----C--T--T-G-ATC---AAAC---A-TA--CCATACGCC-ATGA----TGTGATGT-A-TTG-TG--AG---A--TGTTT--AA-CTACG-TTCCCAGACAAGAAA--TGTGTCAAACATCCAAAC
gi|17 : AATGTCA-GGGGGACACCAA-GTTCTAC-TGTCTCA-CG-T-GTA-AA-CATGAtag
gi|18 : CACAAATCTAT-CATCATCGATTA-CA---GATGTCAAC-AAAA
gi|2 : CTGT-TTGGGA-GCATAATGTTTCATAAAGT-CGTCCTCTTCATTTTTACAGTATCAAGAAT-CAC------AGTGC-TTTA--GGTAGAAAAATTCCACAGTT-TTGATC----ATGTTTATCATTTTCTTGTCATCC-TTTATTTCCTTTTCCTAC-ATTGATTACTAATATGTGTA--TGT-TAATAACATTATTATG--ATGTG----------CCATT-TACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACAGCATG-GACACACTAGGACTCAGT-ACACAG-TATAAAGTACGACATTGTTCTCAATGCCA-GGGGGACACCGA-ATTCTAC-TGTCACA-CG-T-GTA-AA-CATGACATGTG-T-TTAC-TC-T--GCAAAGAGA-GGCATGTCA-T--G-G-ATC---TA-C---A-TA--CAATCCACC-ATGAATGTTATGATT--A-CCG-TG--AG---A--AGTTT--AA-CTACA-TCCCCCGACAAGAAATTTGTGCCCGACATCCAGACAGGATCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTG-TCTGTTTCCGATG-TTTAGAGCACCGA--AAACACCAAAT-ATTG-GACATTAGAACAGCC-TA-TCAAA--AAGCGA-CAA--CAACAC-C-GCGAAATCATTG-AC-AACAT---CAGAAGTCAGACTATC-TATAACTGTCGTG-TTCTCCTGGCAGGAA--------------AT--CC-AAA--CTTGTCCCCCACAAATCTGT-CACCGTCAATCA-CA---GATGTCAAC-AAAAGC-CCAGAG-ACTGAAGGATCTGATTG-ACAC-TGTGGTATG-TGATGTT-A---CA-GATACAGAGGTTTATTGATTTGC-TAG-AATAC-AACAA-CAAAAGAGAAAA-C-TGAA-CAAAC-AACTTGTTCTT-CATC---A-ACAGAACT-CT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCAGTCGTGTCCCCCAGAAAAAG----------------------ACCC---------------------GCCG-TGTCCCCCA------GA-----TA-----AA------GGACAGTCCTA-GTCAGTT-AT-TA-AATGCAAT-CACAGAAATCCAACT----G-TC--AA-CAGGA--A-AACGGCAAGTA-GAATTAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTA-TATTACACG----TGTC--TGTCTGTG--TGACAG------ATGTTCGT--G------AAGT-GTAT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGATA-TCTG----ATGGT---G---AC--AATCTCATCT---TGGCAGA-CAC-AACAGGAGACACTATACACCGT--GTGACAGATA-C-AACTCC---A---TTGTATATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGATT-ACA-ACA-TCAAT----AAACT-GT---C-TATAGAC-AATAAAAC--AG-TCACCACA-CTGTTAGAGA--GGCTTACATCACCATGGTTACCA--CGG-AGTGT-GTACTGTTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------CA-TAACACTG-AT-A----CAAA------GACAGG-CAAGATATCCCGGTACAACAGTACAGGACAACAG-GTAC-TGA-CTATACA-GCAC-GACAACA-C-CGGGCACACACTGTA
gi|3 : AGTATATGCA--TGT-TAATA-CAAAATGACGAGGTGT-----------C--TTATACTTTAAAATT-TCT--GTTTATTTTC-AGCAGA---------------CCCAG-T-CCTCCACATCATG-GACACACTAGGACGCCTT-ACTCAA-TATAAAGTACGGGAGTGTTGTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGCCACA-CG-T-GTA-AA-TATGATCTGTG-T-TTCC-AG-T--GTAAAGAGA-TACATGTCA-T--T-G-ATC---TA-C---A-TA--CCAAAGACC-AC-AATGTTGTGATTT-A-CCG-TG--AG---A--AGTTT--AA-CTACA-TCCCCAGACAAGAGATCTGTGTCCAACATCCGGAGAGGGTCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTT-TCTGTTTCCAATG-TTTAGAGCACCAA--AAACACCAAAT-AATG-GACATTAGAACAGCC-TA-TCAAAGAAAGCGG-CAA--CAACAC-C-GGGAAATCATTA-AC-AGCAT---CAGAAGTGAGACTCTC-TATAACTGTCGTG-TTCTCCTGGCAAGAA-TCCAAACTTAT--AT--TC-AAA--CTTGTCCGCCGCAAATATGG-CACCGTTCATCA-CAACTGATGCCAAC-AAAAGC-CCAGAT-ATTGAAGAATCTGATTG-ATAC-TGTAGTATG-TGATACT-AGAGCAAGATGCAGAGGTTTATTGA-TTGC-AAA-AATAC-AACAA-CAAAAGAGAAAA-A-TGAA-GAGAC-A-CCT--CACT-AAC----ATACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTTTTGTTTATGAAGACCTATCGTATCCCCCAGAAAAAGGCC-------------------ACCCCTGATCTTCCACAACACAT--GCTGCTGTCCCTGACT----GAGAGATTC-----AC---CATGGAGGATGTTA-GTCAGTT-AT-TG-AGTGTCAT-CACAGAAATCCAAATCCAAA-TCTTAA-CAGTA--A-AACGGCAAGTA-GCGATAG-ACGAGTGTGTGAA-ACTGACG-CCCAC-ACCTG-TATTACACG----CGTC--CGTCGGTG--TGATAG------GAGTTAGT--G------AAGT-GTGT-CACATATC--TCG-TGTGA--CGTCAGACCGGATCTGGGTA-TCTG----GTGGT---GATTAC--AATATTATCT---TGACAGA-CAC-AACAGGAGACACTATAGACTGT--GTGGCAGATA-T-AATACC---------------AAAAGGA-CCACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGGAAAC-ATA-ACA-TCAA--C--AAACT-GT---C-GGTAGAC-AATAAAAT--AG-TCACCACC-CTGTTTGAGA--GATCTACATCACCATGGAAACCA--TGG-GGGGT-GTATTGCTCCCCATTC-ACAG-GAGATC-TGTTTGTCG-GGATGTATAAATA-TAACCCTG-AT-A----CAGAAACATGGACAGG-CAAGATAAACCGGTACAACAGTACAGGTCAACAC-ATAC-TGA-CCATACA-TCAC-AACACCA-C-AGGTAAAATAC
gi|4 : AGACACTTCCACATCATGAGACACACAGGGACTCAGTTACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG---TTACTGG-T--GAAAAGAGA-GACATGTCA-T--G-GAATC---TA-CATAA-TA--CCAAGCACC-ATGAAGGTTGTGATTT-ACCCGTTG--AA---AGTGGTCT--AGTTTACATTCCCCATACA--GAATCTGT-TTAGACACCCAGACAGGATCAATTTTATGTTCTG-TCAGTCGTGTTCAGAA--TTTCTG-CCTGTG-CCGATG-GTTAGAGCACCGA--AAACACCAACT-TCTGAAACATTAGAACAGCCTTATTCAAACAAAGCGAGCAAACCAA-ACAC-GAGAAATTATTG-ACAAACAT---CAGAAGTGAAACTCTA-TA-AACCGTCTTGTTTCTTTTATCGGGAATTCCAAACT--GATAT--CCAAAA--CTTGTCCCCCACAAATCTGTCCACCGTCAGTCA-CAACTGATGTTAGCAAAAAGC-CCAGAG-ACTGAAGCATCTGATTG-ACAC-TGTGGTATG-CGATGTTAA-AACAAGATGCATATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAATACAAAACT-AT-GAAGACAGATATG-AAAAATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGGACACCCCTAATATTCCACAACACCT---------------------GCTGCTGTCCCTGACT----GAGGGATTG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT-TTTC-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---TTACAGA-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAAT-ATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TA-GAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACAC-AACGACA-C-CGGTCAggaatag
gi|5 : CAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGG-ACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTAC-TG-T--GTAAAGAGA-GACATGTCA-T--G-G-ATC---TA-C---A-TA--CCAAGCACC-ATGAA-GTTGTGATTT-A-CCG-TG--AA---A--AGTTT--AG-TTACA-TCCCCATACAAGATATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTCTTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTG-AACATTAGAACAGCC-TA-TCAAACAAAGCGA-CAA--CAACAC-C-GAGAAATTATTG-AC-AACAT---CAGAAGTGAAACTCTT-TATAACCGTCTTG-TTCTTTTATCGGGAA-TCCAAACT--GATAT--CC-AAA--CTTGTCCCCCACAAATCTGT-CACCGTCAGTCA-CAACTGATGTTAGC-AAAAAG-CCAGAG-ACTG-AGCATCTGATTG-A-ACATGT-GTATG-CGATGTT-A-AACAAGATGCAGATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAATACAAAACT-AT-GAAGACAGATATG-AA-AATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGGACACCCCTAATATTCCACAACACCT---------------------GCTGCTGTCCCTGACTGAGGGA-----TG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT--TTT-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---T-ACAAG-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGAT--T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAAT-ATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TAGAAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACACAAACGACA-C-CGGTCAagc
gi|6 : ttCCTGATT----GA-----TG-----AATAACATAGACGATGTGAAGTCAATT-ACGTA-GATGGTATTCACAGAA-TCCAAATC---G-TC--AATCAAGATCACAACGACAA-TA-GAA-TAGTACGAGTGTGTGAATATTGACG-TCCAC-ACCTG-TATTAC-CG----C-TT--AAT-TGCAATTGGCAG------ATGTTAGTTCG------TTGT-GTTTACA-ATATC--TGG-TG-AA--CGTCAGACCGGGTCTGTTTA-TCTG----ATTAT---A---AA--AATTTC-TCT---TGACAGAACACCAACAGGAGACACAATACACCGT--GTGAC---TATT-AACATC---A---TGG--TATA-----A-ATAAGCACATGTGAA-AGTTCTGGTGAACTGATTTAT--TAGATAG-GAAC-GTA-AGATTCAAA-CCAAAACTGGT---CTTCTAGAC-AGTAAAAC--AGTTTACCACA-CTGTTAGAAG--CTCCTACATCAagca
gi|7 : aaatcagttcgtgtccccaagaaaaggtaaactgtatctgtgcccgcaacctcctgtttgctga-TGTAAAACACGACAATGTTCTCAATGTCA-GGGGGATTCCGA-GTTCTAC-TGTCGCA-CG-T-GTC-AA-TATGACCTGTG-T-CTGC-AG-T--GTAAAGAGA-TACACGTTA-T--T-G-TTC---TA-G---G-TT--CCCCACAAC-AT-AATGTTGTGATTT-A-CCG-TG--AG---A--AGTTC--AA-ATCCG-TGTTCAAACAAGAAACCTGTGCGAGGCATCCAGACATGGTCTATGAAATATTTTG-CCGGCCGTGC---AAT-GTTCCTG-TGTGTATGCAATG-CTCAGACCACAGT--GGACATAAAAC-GATG-GATCTTAAAACAGTA-TA-CGAAGCACTCCGT-CAA--CAACAT-A-GAACAGTCATTC-AT-AGAAT---TAGGGATGAAAGTCTC-TATAACTGCCATA-TCCTCCTGACAGGAA-TCGAAACG--G--AT--TT-AAA--CACGTGTCATGCAAACATCT-CACAG--ATTCAGAAAAAGATGTCAAT-AAAATC-TCGGAG-AATAAAGCTTCtatgaggcct
gi|8 : G--TGAGAG------ATATTAGT--T------ATGT-GGCC-CACATTTCCCTCG-TCT----CAACAGACGAGCTTTGGGTG-AGTG----ATTTTTTTG---CC--AGGCTTATCT---TAGCTGA-CAC-AACAGGTACCACTCTAAATCGC--CTGACAGATA-CGGACCCCAGAA---TTATCTAT----GGA-TTTCACACG-ACCAGTAGTGCGGGTGAGCTGTTTTAC-ATAGACAGTGCAC-TTA-ACA-TCGG--C--AAACT-CT---C-TACTGCC-GACAATGCCAAG-T--CCATA-CTAATAAAGAATGA---ACA--ACCATGGATACCA--AAT-TGTGTCGTG-TGCTCCCCCTCC-ACTG-GAGATC-TGCTGGTCG-GGATG------AA-GAAAGTTG-ATCATTCCCAAA------AACAGGCCAAAATAAAGAGATACAAAAGCACAGGCCGACAC-GTCC-AGA-CCGTGGA-A-AC-GAa
gi|9 : tCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGC----GGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTATAA-CATGATCTGTG-T-TTAC-TG-T--GTAAAGAGA-GACATGTCA-T--G-G-ATC---TA-C---A-TA--TCAAGCACC-ATGAA-GTTGTGATTT-A-CCG-TG--AA---A--AGTTT--AG-TTACA-TCCCCATACAAGAGATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTTCTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTG-AACATTAGAACAGCC-TA-TCAAACAAAGCGA-CAA--CAACAC-CGGAGAAATTATTG-AC-AACAT---CAGAAGTGAAACTCTT-TATAACCGTCTTG-TTCaccaagccggggatagaatatacagttt
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 1 1 1 1 3333333 1 11 1 1 2222 1 1 11 1 1 222 77777777777777 1 11 1 111 111 11 111 11111 22 11 222 2222 111 55555555555555555555555 222222222 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222222 1111 111 1111111 111111111 1111 111111111 111 1111111 1111 33333 111 1111111 2222222222 1111 111111 1
lowQualScore : 5 5 1 5 5 5 5 5 1 5 1111111 5 88 5 22 5 4444 5 5 1 88 3 3 3 111 33333333333333 7 0 33 3 0 3 0 0 5 5 1 5 4 1 5 8 4 4 3 3 3 3 3 4 4 1 8 55 4 4 8888 4 777 4 6666 222 11 4 88 4 4 4 4 55 777 55 55 4 4 44 44 222 5 000 22 5 1 5 77 0 66 5 5 5 0 5 77 5 66 5 5 000 5 3 5 1 1 999 22222 11 33 0 5 66 888 5 5 5 1 6 1 6 1 77 8888 1 6 6 6 666 6 888 6 33333333333333333333333 6 6 6 2 6 6 6 1 5 222222222 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 22 5 5 5 5 1 22 5 4 222222 99 6 99 6 3 6 3 6 6 6 5 5 2222 111 1 66 5555555 1 777777777 5 1 5 0 66 5 1 66 1 5 0000 444444444 888 1 888 1 0 5 5 1 1 77 000 8888888 44 3 4444 5 1 1 5 1 0 5 5 4 33333 5 000 5 5 77 5 1 5 9999999 44 77 5 5 3 77 5 5 5 1 4444444444 22 5 5 2222 666666 5 22 2 0 5 1 5 5 1 5 5 0 6 6 1 1
lowQualScore : . . . . . . . . . . ....... . .. . .. . .... . . . .. . . . ... .............. . . .. . . . . . . . . . . . . . . . . . . . . . . . . .. . . .... . ... . .... ... .. . .. . . . . .. ... .. .. . . .. .. ... . ... .. . . . .. . .. . . . . . .. . .. . . ... . . . . . ... ..... .. .. . . .. ... . . . . . . . . .. .... . . . . ... . ... . ....................... . . . . . . . . . ......... ................................................................................................. . .. . . . . . .. . . ...... .. . .. . . . . . . . . . .... ... . .. ....... . ......... . . . . .. . . .. . . .... ......... ... . ... . . . . . . .. ... ....... .. . .... . . . . . . . . . ..... . ... . . .. . . . ....... .. .. . . . .. . . . . .......... .. . . .... ...... . .. . . . . . . . . . . . . . .
lowQualScore : 5 5 0 5 5 0 5 5 0 0 0000000 0 55 5 00 5 0000 0 5 0 33 3 3 7 000 33333333333333 3 0 88 2 0 2 8 8 7 7 0 7 4 0 3 0 0 0 6 6 6 6 6 0 0 0 0 55 0 0 6666 0 000 0 9999 555 33 0 88 0 0 0 0 55 000 55 55 0 0 99 66 777 7 000 33 7 0 7 99 7 77 7 7 7 7 7 99 7 44 7 7 000 7 0 7 7 4 444 99999 44 66 7 0 99 888 0 7 7 0 7 0 7 0 33 8888 0 7 7 7 777 7 333 7 00000000000000000000000 7 7 7 5 7 7 7 0 4 777777777 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 9 11 7 7 7 7 9 33 7 9 888888 22 7 22 7 7 7 5 7 7 7 7 7 1111 999 4 99 6666666 4 555555555 0 0 0 2 99 0 4 99 4 0 6666 888888888 999 4 888 4 4 0 0 4 7 99 111 0000000 44 0 4444 7 4 6 7 4 4 7 7 3 00000 7 000 7 7 99 7 7 7 7777777 77 99 7 7 0 44 7 7 7 4 1111111111 00 7 7 1111 444444 7 33 0 7 7 0 7 7 0 7 7 7 7 7 0 0
consensus : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACT--G--ATA-CCAAA--CTTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAACTGATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGATT-GC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-A-CTT--TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG---AC---ACC------------------CCT-AT-TTCCACAACAC-TG---CCGC-------T--GTC------CCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
Reference ( family-561 ) : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACNG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACT--G--AT--CCAAA--CTTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAAC-GATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGATT-GC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-A-CTT--TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG---AC---ACC------------------C-------------------G---CCGC-------T--GTC------CCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
gi|1 : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAATGTGTGTATCTGTCTGATA-CATAATTAGG-GTTGTGGTTTTTTTCAC--TTATACTTTGTACTGTTCTTGGTTT-TTTTCAAGCAGATTGTATTCCTAGAGACCCAGAA-TCTCCACATCATG-GACACA-TAGGACTCAGT-ACACAGTTATAAAGTACGACATTGTTCTCAATGTCAGGGGGGACACCGA-GTTCTAC-TGTCACA-CGTT-GTA-AACCATG-CCTGTGCT-TTACTGATGAGTAAGAAGAGGACAGGTCA-T--GAAA-TT---AA-C--ATTA---CCATCCACCAATG-ATGTTGTTATCT-ACC-GTT-G--AGAAAAA--GTTTAAAACT-ATAT-CCCC-GACAAG--TTCTGTGTCCGACATCCAGACAGGATCTATGAAATGTTCTGTTCAGTCGTGT---GAACTTTTCTGTCCTGTTTCCGATGTTTTAGATCACCAATTATGGACCAACTAACTGAA-CA-TAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CA-C-GAGAAATCATTATACAA-CACATACAGAACTGAGAATCTCGTATAACTGTTGTGTT--TCCT-GCAGGAATT-CCAAACT--G--ATA-CCAAAACTTTGT-CCCCACAAATCTGTC-ACCG--TCAATCACAGC--ATGGCAACAAAA-GCTCCAGAGAACTGAAGGATCTGATTGAACAC-TGTGGGATGTTGATACTACAA-CAA-ATACAGAAATTTATGTATT-GCGTAGAAATACAAACAGCCAGAAGAGAAAATATTGAACCAGAC-----C--GCCT-CACCCA-C-CACAAAACTGATAGAGGACAGATATGAAACAATCAGCACATACAAGAGTGCT-CA---TCTCTTGTTTATTAAAACCAGTCGTGTCCCCCAGATAAAGG---AC---ACCCCCTATATCTTTCAACAAC-------------------A---CTGC-------TGCGTC------CTTGACT----GA-----GGATTCAAA---CATGGA-GATGTGA-GTCAGTTGAT-TGAGGGGGAAT-C-C-GAAATCCATAT----ATTC--AA-C-AGG--A-AACGACAAGTAGGAAATAG-ACGAGTGGTTGAA-ACTGACGATCCACAACCTGCTCTTA-ACAGAGTCGTCATAGTCTGCT--TGACAGTGTGTTGTATTACT--GGAGTTTACGTAGTTT----ATACC--TAGCTGTGAACCGTCAGACCGGGTCTGGGTATTCTGCCTCAAGAC---G---ACAAAATCTCACCTGCATGAC-GA-CAC-AACA-GAGACACTATACACCGTTAGTGACAACTA-G-A--ACC---AGGGTTATTAGCAGGAGGAGCTACAC-CA-GTCGACAGTTC-GGTGAACTGATTTATAATA-ACAGTAATGATACACA-TCAAT-CTAAAACT-GTTCAT-CATAGACAAATAAAAC--AT-TTACCACATTTGTTAGAGA--G--CTACATCCACATGGAGCCCATTCAG-TGTGT-TTACTG-TCCCCGTCCAACTA-GAGATC-TGA--ATCGCGGACGT-----TT-AAACAGTGCAT-A----CACT------GACAGG-CAAGAAATACC-GT-CAACAGTACAGGACAACATGGTAC-T-A-CTATACA-ATAC-AACAACA-CTCGGTCA
gi|10 : GGCAGGAA-T-CCAAACT--G--ATATCCAAA--GTTTGCCCTCACAAATCTGTC-ACCG--TAAATCACA---GATGTCAACAAAA-GC-CCAGAG-AATGAAGGATCTGATTG-ACAC-TGTGGTATT-TGAGGTTA----CAAGATACTGAGGTTTAGTGATT-GC-CAG-AATTC-AACAA-CAGAAGAGAAAA-A-TGAA-CAGACAA-CTTG-TTTTATATC-----TACAGAACT-AT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTTGTGTACCCCAGATAAAG---------ACC------------------A-------------------A---TCG--------T--GTC------CCCCA------GG-----TA-----AA------GGGCAGTTCTA-GTCAGTT-AT-TG-AATGCCAT-CACA
gi|11 : TG-TCT--GTTTATTTTC-GGCAGATTGTATTCCTAAAGGCAGTGAT-CATCCACATCATG-GACATACTAAAATTCAGT-ACACAG-TATAAAGTACGGCAGTGTTCTCAATGTCA-GGGGGACACCGA-GTTCTAC-T-TCCCACCG-T-GTA-AA-CAT-ATCTATG-T-TTACGG-T--GTAAA
gi|12 : acacttCAG-TGTAAAGTACGACATTGTT-TCAATGTCACAGGGGACACCGAAGTTCTACCTGTCACA-CG-T-GTA-AA-C-TG-CCTATG-TCTTACTG-T--GTA--GAAA-GGCATGCCAGTCAA-GA-TC---TA-TCAA-TAAC-CCAAACACC-ATGA---TCGTGATTTTACC-G-T-G--AG---AA--GTTT--AAAT-GTAT-CCCTTTACGAGAAAACTGTGTCAGACATCCAAACacgaagattattaacagaaaaaaccacaaatatcaccatgttaggttttgtttaac
gi|13 : cagCCTTGGCAACCA--TGGATGT-T-G-ACTGA--CCCGTC--GCTGCGAGATTATGATGGTCG-GGATG------TT-ATATACTG-AT-A----CAGA------GACAGG-CA-GATTAAACGGTACAACAGTACAGGACAACAC-GTGCTTGATCTATACATGCAC-GACAACATC-TGGTCACAAACTCTA
gi|14 : CACA-CG-TTGTA-AA-C-TGATTTGTG-T-TTACAT-C--GTAAAGA-A-GACAT-----T--G--A-TCAAATA-T----TA---CCATACACC-ATGGATGTTGT-ATGT-ATT-G-T-GTGAG---AT--GTTT--AACT-ACAT-TCCCCGACAAG--ATATGTGTCAGACATCCGAACagttat
gi|15 : C-ACCTG-TATTACACA----CGTC--CGTCTGTG--TGCCAA------ATGTTAAT--T------CTGT-GTAT-CACATATA--TGG-TGTTA--TGTCAGACCGAGTCTGGGTA-TCTG----GTAGA---C---AC--AGTCTCATCT---TGACAGA-CAC-AACAGtagagatgattt
gi|16 : AAAGAGA-TAC----C--T--T-GA-TC---AAAC--A-TA---CCATACGCC-ATGA----TGTGATGT-ATT-G-T-G--AG---AT--GTTT--AACT-ACGT-TCCCAGACAAGAAA--TGTGTCAAACATCCAAAC
gi|17 : AATGTCA-GGGGGACACCAA-GTTCTAC-TGTCTCA-CG-T-GTA-AA-CATGAtag
gi|18 : CACAAATCTATC-ATCA--TCGATTACA---GATGTCAACAAAA-
gi|2 : CTGT-TTGGGA-GCATAATGTTTCATAAAGT-CGTCCTCTTCATTTTTACAGTATCAAGAAT-CAC------AGTGC-TTTA--GGTAGAAAAATTCCACAGTT-TTGATC----ATGTTTATCATTTTCTTGTCATCC-TTTATTTCCTTTTCCTAC-ATTGATTACTAATATGTGTA--TGT-TAATAACATTATTATG--ATGTG----------CCATT-TACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACAGCATG-GACACACTAGGACTCAGT-ACACAG-TATAAAGTACGACATTGTTCTCAATGCCA-GGGGGACACCGA-ATTCTAC-TGTCACA-CG-T-GTA-AA-CATGACATGTG-T-TTACTC-T--GCAAAGAGA-GGCATGTCA-T--G-GA-TC---TA-C--A-TA---CAATCCACC-ATGAATGTTATGATT--ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCCGACAAGAAATTTGTGCCCGACATCCAGACAGGATCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTG-TCTGTTTCCGATG-TTTAGAGCACCGA--AAACACCAAAT-ATTGGA-CATTAGAACAGCCT-AT-CAAA--AAGCGA-CAA--CAA-CACC-GCGAAATCATTG-ACAA-CAT---CAGAAGTCAGACTATC-TATAACTGTCGTGTT-CTCCTGGCAGGAA---------------AT--CCAAA--CTTGTCCCCCACAAATCTGTC-ACCG--TCAATCACA---GATGTCAACAAAA-GC-CCAGAG-ACTGAAGGATCTGATTG-ACAC-TGTGGTATG-TGATGTTA----CA-GATACAGAGGTTTATTGATTTGC-TAG-AATAC-AACAA-CAAAAGAGAAAA-C-TGAA-CAAAC-AACTTGTTCTT-CATC---A--ACAGAACT-CT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCAGTCGTGTCCCCCAGAAAAAG---------ACC------------------C-------------------G---CCG--------T--GTC------CCCCA------GA-----TA-----AA------GGACAGTCCTA-GTCAGTT-AT-TA-AATGCAAT-CACAGAAATCCAACT----G-TC--AA-CAGGA--A-AACGGCAAGTA-GAATTAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTA-TATTACACG----TGTC--TGTCTGTG--TGACAG------ATGTTCGT--G------AAGT-GTAT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGATA-TCTG----ATGGT---G---AC--AATCTCATCT---TGGCAGA-CAC-AACAGGAGACACTATACACCGT--GTGACAGATA-C-AACTCC---A---TTGTATATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGATTACA-ACA-TCAAT----AAACT-GT---C-TATAGAC-AATAAAAC--AG-TCACCACA-CTGTTAGAGA--GGCTTACATCACCATGGTTACCA--CGG-AGTGT-GTACTGTTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------CA-TAACACTG-AT-A----CAAA------GACAGG-CAAGATATCCCGGTACAACAGTACAGGACAACAG-GTAC-TGA-CTATACA-GCAC-GACAACA-C-CGGGCACACACTGTA
gi|3 : AGTATATGCA--TGT-TAATA-CAAAATGACGAGGTGT-----------C--TTATACTTTAAAATT-TCT--GTTTATTTTC-AGCAGA---------------CCCAG-T-CCTCCACATCATG-GACACACTAGGACGCCTT-ACTCAA-TATAAAGTACGGGAGTGTTGTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGCCACA-CG-T-GTA-AA-TATGATCTGTG-T-TTCCAG-T--GTAAAGAGA-TACATGTCA-T--T-GA-TC---TA-C--A-TA---CCAAAGACC-AC-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAGATCTGTGTCCAACATCCGGAGAGGGTCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTT-TCTGTTTCCAATG-TTTAGAGCACCAA--AAACACCAAAT-AATGGA-CATTAGAACAGCCT-AT-CAAAGAAAGCGG-CAA--CAA-CACC-GGGAAATCATTA-ACAG-CAT---CAGAAGTGAGACTCTC-TATAACTGTCGTGTT-CTCCTGGCAAGAA-T-CCAAACTTAT--AT--TCAAA--CTTGTCCGCCGCAAATATGGC-ACCG--TTCATCACAACTGATGCCAACAAAA-GC-CCAGAT-ATTGAAGAATCTGATTG-ATAC-TGTAGTATG-TGATACTAGAG-CAAGATGCAGAGGTTTATTGATT-GC-AAA-AATAC-AACAA-CAAAAGAGAAAA-A-TGAA-GAGAC-A-CCT--CACT-AAC----A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTTTTGTTTATGAAGACCTATCGTATCCCCCAGAAAAAGG---CC---ACC------------------CCTGATCTTCCACAACACATG---CTGC-------T--GTC------CCTGACT----GAGAGATTC-----AC---CATGGAGGATGTTA-GTCAGTT-AT-TG-AGTGTCAT-CACAGAAATCCAAATCCAAA-TCTTAA-CAGTA--A-AACGGCAAGTA-GCGATAG-ACGAGTGTGTGAA-ACTGACG-CCCAC-ACCTG-TATTACACG----CGTC--CGTCGGTG--TGATAG------GAGTTAGT--G------AAGT-GTGT-CACATATC--TCG-TGTGA--CGTCAGACCGGATCTGGGTA-TCTG----GTGGT---GATTAC--AATATTATCT---TGACAGA-CAC-AACAGGAGACACTATAGACTGT--GTGGCAGATA-T-AATACC---------------AAAAGGA-CCACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGGAAACATA-ACA-TCAA--C--AAACT-GT---C-GGTAGAC-AATAAAAT--AG-TCACCACC-CTGTTTGAGA--GATCTACATCACCATGGAAACCA--TGG-GGGGT-GTATTGCTCCCCATTC-ACAG-GAGATC-TGTTTGTCG-GGATGTATAAATA-TAACCCTG-AT-A----CAGAAACATGGACAGG-CAAGATAAACCGGTACAACAGTACAGGTCAACAC-ATAC-TGA-CCATACA-TCAC-AACACCA-C-AGGTAAAATAC
gi|4 : AGACACTTCCACATCATGAGACACACAGGGACTCAGTTACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-T-ACTGGT--GAAAAGAGA-GACATGTCA-T--G-GAATC---TA-C--A-TAATACCAAGCACC-ATGAAGGTTGTGATTT-ACCCG-TTG--AA---AGTGGTCT--AGTTTACATTCCCCATACAG--AATCTGT-TTAGACACCCAGACAGGATCAATTTTATGTTCTG-TCAGTCGTGTTCAGAA--TTTCTG-CCTGTG-CCGATG-GTTAGAGCACCGA--AAACACCAACT-TCTGAAACATTAGAACAGCCTTATTCAAACAAAGCGAGCAAACCAAACAC--GAGAAATTATTG-ACAAACAT---CAGAAGTGAAACTCTA-TA-AACCGTCTTGTTTCTTTTATCGGGAA-TTCCAAACT--G--ATATCCAAAA-CTTGTCCCCCACAAATCTGTCCACCG--TCAGTCACAACTGATGTTAGCAAAAAGC-CCAGAG-ACTGAAGCATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AAACAAGATGCATATGTTTATTGATT-GC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-C------CT-CACCCG-AATACAAAACT-AT-GAAGACAGATATG-AAAAATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG---AC---ACC------------------CCTAATATTCCACAACACCTG---CTGC-------T--GTC------CCTGACT----GAGGGATTG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT-TTTC-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---TTACAGA-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TA-GAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACAC-AACGACA-C-CGGTCAggaatag
gi|5 : CAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGG-ACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGATATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTCTTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-CTTTTATCGGGAA-T-CCAAACT--GATAT--CCAAA--CTTGTCCCCCACAAATCTGTC-ACCG--TCAGTCACAACTGATGTTAGCAAAA-AG-CCAGAG-ACTG-AGCATCTGATTG-A-ACATGT-GTATG-CGATGTTA-AA-CAAGATGCAGATGTTTATTGATT-GC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAA-TACAAAACT-AT-GAAGACAGATATG-AA-AATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG---AC---ACC------------------CCTAATATTCCACAACACCTG---CTGC-------T--GTC------CCTGACTGAGGGA-----TG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT--TTT-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---T-ACAAG-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGAT--T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TAGAAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACACAAACGACA-C-CGGTCAagc
gi|6 : ttTCGTGTCCCCAAGA-AAAGGTAAACTGTATC------------------T-------------------GTGCCCGCAACCTCCT--GTTTGCTGACCTGATT----GA-----TG-----AATAACATAGACGATGTGAAGTCAATT-ACGTA-GATGGTATTCACAGAA-TCCAAATC---G-TC--AATCAAGATCACAACGACAA-TA-GAA-TAGTACGAGTGTGTGAATATTGACG-TCCAC-ACCTG-TATTAC-CG----C-TT--AAT-TGCAATTGGCAG------ATGTTAGTTCG------TTGT-GTTTACA-ATATC--TGG-TG-AA--CGTCAGACCGGGTCTGTTTA-TCTG----ATTAT---A---AA--AATTTC-TCT---TGACAGAACACCAACAGGAGACACAATACACCGT--GTGAC---TATT-AACATC---A---TGG--TATA-----A-ATAAGCACATGTGAA-AGTTCTGGTGAACTGATTTAT--TAGATAG-GAACGTA-AGATTCAAA-CCAAAACTGGT---CTTCTAGAC-AGTAAAAC--AGTTTACCACA-CTGTTAGAAG--CTCCTACATCAagca
gi|7 : aaatcagt-TGTAAAACACGACAATGTTCTCAATGTCA-GGGGGATTCCGA-GTTCTAC-TGTCGCA-CG-T-GTC-AA-TATGACCTGTG-T-CTGCAG-T--GTAAAGAGA-TACACGTTA-T--T-GT-TC---TA-G--G-TT---CCCCACAAC-AT-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTC--AAAT-CCGT-GTTCAAACAAGAAACCTGTGCGAGGCATCCAGACATGGTCTATGAAATATTTTG-CCGGCCGTGC---AAT-GTTCCTG-TGTGTATGCAATG-CTCAGACCACAGT--GGACATAAAAC-GATGGA-TCTTAAAACAGTAT-AC-GAAGCACTCCGT-CAA--CAA-CATA-GAACAGTCATTC-ATAG-AAT---TAGGGATGAAAGTCTC-TATAACTGCCATATC-CTCCTGACAGGAA-T-CGAAACG--G--AT--TTAAA--CACGTGTCATGCAAACATCTC-ACAGATTCAG--AAAAA-GATGTCAATAAAA-TC-TCGGAG-AATAAAGCTTCtatgaggcct
gi|8 : G--TGAGAG------ATATTAGT--T------ATGT-GGCC-CACATTTCCCTCG-TCT----CAACAGACGAGCTTTGGGTG-AGTG----ATTTTTTTG---CC--AGGCTTATCT---TAGCTGA-CAC-AACAGGTACCACTCTAAATCGC--CTGACAGATA-CGGACCCCAGAA---TTATCTAT----GGA-TTTCACACG-ACCAGTAGTGCGGGTGAGCTGTTTTAC-ATAGACAGTGCACTTA-ACA-TCGG--C--AAACT-CT---C-TACTGCC-GACAATGCCAAG-T--CCATA-CTAATAAAGAATGA---ACA--ACCATGGATACCA--AAT-TGTGTCGTG-TGCTCCCCCTCC-ACTG-GAGATC-TGCTGGTCG-GGATG------AA-GAAAGTTG-ATCATTCCCAAA------AACAGGCCAAAATAAAGAGATACAAAAGCACAGGCCGACAC-GTCC-AGA-CCGTGGA-A-AC-GAa
gi|9 : tCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGC----GGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTATAA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---TCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGAGATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTTCTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACCGGAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-Caccaagccggggatagaatatacagttt
Alignments
lowQualScore : 1 1 1 1 1 1 1 1 3333333 1 11 1 1 2222 1 1 11 1 1 222 77777777777777 1 11 1 111 111 11 111 22 222 2222 111 55555555555555555555555 5555555555555555555555555555 111111 4444444444444444444 222222 1111 111 1111111 111111111 1111 111111111 111 1111111 1111 33333 111 1111111 2222222222 1111 111111 1
lowQualScore : 5 5 1 5 5 5 5 5 1 5 1111111 5 88 5 22 5 4444 5 5 1 88 3 3 3 111 33333333333333 7 0 33 3 0 3 0 0 5 5 1 5 4 1 5 8 4 4 3 3 3 3 3 4 4 1 8 55 4 4 8888 4 777 4 6666 222 11 4 88 4 4 4 4 55 777 55 55 4 4 44 44 222 5 000 22 5 1 5 77 0 66 5 5 5 0 5 77 5 66 5 5 000 5 3 5 1 1 999 22 77 77 0 5 5 333 5 5 5 1 6 1 6 1 77 0000 1 6 6 6 666 6 888 6 33333333333333333333333 6 6 6 2 6 6 6 1 5 5 5 4444444444444444444444444444 77 4 1 666666 0000000000000000000 7 22 5 5 5 5 1 22 5 4 222222 99 6 99 6 3 6 3 6 6 6 5 5 2222 111 1 66 5555555 1 777777777 5 1 5 0 66 5 1 66 1 5 0000 444444444 888 1 888 1 0 5 5 1 1 77 000 8888888 44 3 4444 5 1 1 5 1 0 5 5 4 33333 5 000 5 5 77 5 1 5 9999999 44 77 5 5 3 77 5 5 5 1 4444444444 22 5 5 2222 666666 5 22 2 0 5 1 5 5 1 5 5 0 6 6 1 1
lowQualScore : . . . . . . . . . . ....... . .. . .. . .... . . . .. . . . ... .............. . . .. . . . . . . . . . . . . . . . . . . . . . . . . .. . . .... . ... . .... ... .. . .. . . . . .. ... .. .. . . .. .. ... . ... .. . . . .. . .. . . . . . .. . .. . . ... . . . . . ... .. .. .. . . . ... . . . . . . . . .. .... . . . . ... . ... . ....................... . . . . . . . . . . . ............................ .. . . ...... ................... . .. . . . . . .. . . ...... .. . .. . . . . . . . . . .... ... . .. ....... . ......... . . . . .. . . .. . . .... ......... ... . ... . . . . . . .. ... ....... .. . .... . . . . . . . . . ..... . ... . . .. . . . ....... .. .. . . . .. . . . . .......... .. . . .... ...... . .. . . . . . . . . . . . . . .
lowQualScore : 5 5 0 5 5 0 5 5 0 0 0000000 0 55 5 00 5 0000 0 5 0 33 3 3 7 000 33333333333333 3 0 88 2 0 2 8 8 7 7 0 7 4 0 3 0 0 0 6 6 6 6 6 0 0 2 0 55 0 0 6666 0 000 0 9999 555 33 0 88 0 0 0 0 55 000 55 55 0 0 99 66 777 7 000 33 7 0 7 99 7 77 7 7 7 1 7 99 7 44 7 7 000 7 0 7 7 4 444 11 99 99 7 0 0 111 0 7 7 0 7 0 7 0 33 7777 0 7 7 7 777 7 333 7 00000000000000000000000 7 7 7 5 7 7 7 0 4 7 7 4444444444444444444444444444 11 3 4 666666 4444444444444444444 9 11 7 7 7 7 9 33 7 9 888888 22 7 22 7 7 7 5 7 7 7 7 7 1111 999 4 99 6666666 4 555555555 0 0 0 2 99 0 4 99 4 0 6666 888888888 999 4 888 4 4 0 0 4 7 99 111 0000000 44 0 4444 7 4 6 7 4 4 7 7 3 00000 7 000 7 7 99 7 7 7 7777777 77 99 7 7 0 44 7 7 7 4 1111111111 00 7 7 1111 444444 7 33 0 7 7 0 7 7 0 7 7 7 7 7 0 0
consensus : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCC--AAA--CTTGTCCCCCACAAATCTGTC-ACCGTCAATCA-CAAC-GATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
Reference ( family-561 ) : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATA-CC--AAA--CTTGTCCCCCACAAATCTGTC-ACCGTCAATCA-CAACTGATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
gi|1 : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAATGTGTGTATCTGTCTGATA-CATAATTAGG-GTTGTGGTTTTTTTCAC--TTATACTTTGTACTGTTCTTGGTTT-TTTTCAAGCAGATTGTATTCCTAGAGACCCAGAA-TCTCCACATCATG-GACACA-TAGGACTCAGT-ACACAGTTATAAAGTACGACATTGTTCTCAATGTCAGGGGGGACACCGA-GTTCTAC-TGTCACA-CGTT-GTA-AACCATG-CCTGTGCT-TTACTGATGAGTAAGAAGAGGACAGGTCA-T--GAAA-TT---AA-C--ATTA---CCATCCACCAATG-ATGTTGTTATCT-ACC-GTT-G--AGAAAAA--GTTTAAAACT-ATAT-CCCC-GACAAG--TTCTGTGTCCGACATCCAGACAGGATCTATGAAATGTTCTGTTCAGTCGTGT---GAACTTTTCTGTCCTGTTTCCGATGTTTTAGATCACCAATTATGGACCAACTAACTGAA-CA-TAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CA-C-GAGAAATCATTATACAA-CACATACAGAACTGAGAATCTCGTATAACTGTTGTGTT--TCCT-GCAGGAATT-CCAAACTGATA-CC--AAAACTTTGT-CCCCACAAATCTGTC-ACCGTCAATCA-CAGC--ATGGCAACAAAA-GCTCCAGAGAACTGAAGGATCTGATTGAACAC-TGTGGGATGTTGATACTACAA-CAA-ATACAGAAATTTATGTA-TTGCGTAGAAATACAAACAGCCAGAAGAGAAAATATTGAACCAGAC------C-GCCT-CACCCA-C-CACAAAACTGATAGAGGACAGATATGAAACAATCAGCACATACAAGAGTGCT-CA---TCTCTTGTTTATTAAAACCAGTCGTGTCCCCCAGATAAAGG-ACACCC---CCT-ATATCT-TTCAACAACA--C-TGCT-GC-GTCCTTGACT----GA-----GGATTCAAA---CATGGA-GATGTGA-GTCAGTTGAT-TGAGGGGGAAT-C-C-GAAATCCATAT----ATTC--AA-C-AGG--A-AACGACAAGTAGGAAATAG-ACGAGTGGTTGAA-ACTGACGATCCACAACCTGCTCTTA-ACAGAGTCGTCATAGTCTGCT--TGACAGTGTGTTGTATTACT--GGAGTTTACGTAGTTT----ATACC--TAGCTGTGAACCGTCAGACCGGGTCTGGGTATTCTGCCTCAAGAC---G---ACAAAATCTCACCTGCATGAC-GA-CAC-AACA-GAGACACTATACACCGTTAGTGACAACTA-G-A--ACC---AGGGTTATTAGCAGGAGGAGCTACAC-CA-GTCGACAGTTC-GGTGAACTGATTTATAATA-ACAGTAATGATACACA-TCAAT-CTAAAACT-GTTCAT-CATAGACAAATAAAAC--AT-TTACCACATTTGTTAGAGA--G--CTACATCCACATGGAGCCCATTCAG-TGTGT-TTACTG-TCCCCGTCCAACTA-GAGATC-TGA--ATCGCGGACGT-----TT-AAACAGTGCAT-A----CACT------GACAGG-CAAGAAATACC-GT-CAACAGTACAGGACAACATGGTAC-T-A-CTATACA-ATAC-AACAACA-CTCGGTCA
gi|10 : GGCAGGAA-T-CCAAACTGATATCC--AAA--GTTTGCCCTCACAAATCTGTC-ACCGTAAATCA-CA---GATGTCAACAAAA-GC-CCAGAG-AATGAAGGATCTGATTG-ACAC-TGTGGTATT-TGAGGTTA----CAAGATACTGAGGTTTAGTGA-TTGC-CAG-AATTC-AACAA-CAGAAGAGAAAA-A-TGAA-CAGACAACT--TGTTTTATATC-----TACAGAACT-AT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTTGTGTACCCCAGATAAA-G-AC-----------------------CAA--------TC-G-TGTCCCCCA------GG-----TA-----AA------GGGCAGTTCTA-GTCAGTT-AT-TG-AATGCCAT-CACA
gi|11 : TG-TCT--GTTTATTTTC-GGCAGATTGTATTCCTAAAGGCAGTGAT-CATCCACATCATG-GACATACTAAAATTCAGT-ACACAG-TATAAAGTACGGCAGTGTTCTCAATGTCA-GGGGGACACCGA-GTTCTAC-T-TCCCACCG-T-GTA-AA-CAT-ATCTATG-T-TTACGG-T--GTAAA
gi|12 : acacttCAG-TGTAAAGTACGACATTGTT-TCAATGTCACAGGGGACACCGAAGTTCTACCTGTCACA-CG-T-GTA-AA-C-TG-CCTATG-TCTTACTG-T--GTA--GAAA-GGCATGCCAGTCAA-GA-TC---TA-TCAA-TAAC-CCAAACACC-ATGA---TCGTGATTTTACC-G-T-G--AG---AA--GTTT--AAAT-GTAT-CCCTTTACGAGAAAACTGTGTCAGACATCCAAACacgaagattattaacagaaaaaaccacaaatatcaccatgttaggttttgtttaac
gi|13 : cagCCTTGGCAACCA--TGGATGT-T-G-ACTGA--CCCGTC--GCTGCGAGATTATGATGGTCG-GGATG------TT-ATATACTG-AT-A----CAGA------GACAGG-CA-GATTAAACGGTACAACAGTACAGGACAACAC-GTGCTTGATCTATACATGCAC-GACAACATC-TGGTCACAAACTCTA
gi|14 : CACA-CG-TTGTA-AA-C-TGATTTGTG-T-TTACAT-C--GTAAAGA-A-GACAT-----T--G--A-TCAAATA-T----TA---CCATACACC-ATGGATGTTGT-ATGT-ATT-G-T-GTGAG---AT--GTTT--AACT-ACAT-TCCCCGACAAG--ATATGTGTCAGACATCCGAACagttat
gi|15 : C-ACCTG-TATTACACA----CGTC--CGTCTGTG--TGCCAA------ATGTTAAT--T------CTGT-GTAT-CACATATA--TGG-TGTTA--TGTCAGACCGAGTCTGGGTA-TCTG----GTAGA---C---AC--AGTCTCATCT---TGACAGA-CAC-AACAGtagagatgattt
gi|16 : AAAGAGA-TAC----C--T--T-GA-TC---AAAC--A-TA---CCATACGCC-ATGA----TGTGATGT-ATT-G-T-G--AG---AT--GTTT--AACT-ACGT-TCCCAGACAAGAAA--TGTGTCAAACATCCAAAC
gi|17 : AATGTCA-GGGGGACACCAA-GTTCTAC-TGTCTCA-CG-T-GTA-AA-CATGAtag
gi|18 : CACAAATCTATC-ATCATCGATTA-CA---GATGTCAACAAAA-
gi|2 : CTGT-TTGGGA-GCATAATGTTTCATAAAGT-CGTCCTCTTCATTTTTACAGTATCAAGAAT-CAC------AGTGC-TTTA--GGTAGAAAAATTCCACAGTT-TTGATC----ATGTTTATCATTTTCTTGTCATCC-TTTATTTCCTTTTCCTAC-ATTGATTACTAATATGTGTA--TGT-TAATAACATTATTATG--ATGTG----------CCATT-TACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACAGCATG-GACACACTAGGACTCAGT-ACACAG-TATAAAGTACGACATTGTTCTCAATGCCA-GGGGGACACCGA-ATTCTAC-TGTCACA-CG-T-GTA-AA-CATGACATGTG-T-TTACTC-T--GCAAAGAGA-GGCATGTCA-T--G-GA-TC---TA-C--A-TA---CAATCCACC-ATGAATGTTATGA-TT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCCGACAAGAAATTTGTGCCCGACATCCAGACAGGATCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTG-TCTGTTTCCGATG-TTTAGAGCACCGA--AAACACCAAAT-ATTGGA-CATTAGAACAGCCT-AT-CAA--AAAGCGA-CAA--CAA-CACC-GCGAAATCATTG-ACAA-CAT---CAGAAGTCAGACTATC-TATAACTGTCGTGTT-CTCCTGGCAGGAA-----------AT--CC--AAA--CTTGTCCCCCACAAATCTGTC-ACCGTCAATCA-CA---GATGTCAACAAAA-GC-CCAGAG-ACTGAAGGATCTGATTG-ACAC-TGTGGTATG-TGATGTT---A-C-AGATACAGAGGTTTATTGATTTGC-TAG-AATAC-AACAA-CAAAAGAGAAAA-C-TGAA-CAAACAACTTGT-TCTT-CATC---A--ACAGAACT-CT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCAGTCGTGTCCCCCAGAAAAAG----A-CC---C-------------------------GCC-G-TGTCCCCCA------GA-----TA-----AA------GGACAGTCCTA-GTCAGTT-AT-TA-AATGCAAT-CACAGAAATCCAACT----G-TC--AA-CAGGA--A-AACGGCAAGTA-GAATTAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTA-TATTACACG----TGTC--TGTCTGTG--TGACAG------ATGTTCGT--G------AAGT-GTAT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGATA-TCTG----ATGGT---G---AC--AATCTCATCT---TGGCAGA-CAC-AACAGGAGACACTATACACCGT--GTGACAGATA-C-AACTCC---A---TTGTATATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGATTACA-ACA-TCAAT----AAACT-GT---C-TATAGAC-AATAAAAC--AG-TCACCACA-CTGTTAGAGA--GGCTTACATCACCATGGTTACCA--CGG-AGTGT-GTACTGTTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------CA-TAACACTG-AT-A----CAAA------GACAGG-CAAGATATCCCGGTACAACAGTACAGGACAACAG-GTAC-TGA-CTATACA-GCAC-GACAACA-C-CGGGCACACACTGTA
gi|3 : AGTATATGCA--TGT-TAATA-CAAAATGACGAGGTGT-----------C--TTATACTTTAAAATT-TCT--GTTTATTTTC-AGCAGA---------------CCCAG-T-CCTCCACATCATG-GACACACTAGGACGCCTT-ACTCAA-TATAAAGTACGGGAGTGTTGTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGCCACA-CG-T-GTA-AA-TATGATCTGTG-T-TTCCAG-T--GTAAAGAGA-TACATGTCA-T--T-GA-TC---TA-C--A-TA---CCAAAGACC-AC-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAGATCTGTGTCCAACATCCGGAGAGGGTCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTT-TCTGTTTCCAATG-TTTAGAGCACCAA--AAACACCAAAT-AATGGA-CATTAGAACAGCCT-AT-CAAAGAAAGCGG-CAA--CAA-CACC-GGGAAATCATTA-ACAG-CAT---CAGAAGTGAGACTCTC-TATAACTGTCGTGTT-CTCCTGGCAAGAA-T-CCAAACTTATATTC--AAA--CTTGTCCGCCGCAAATATGGC-ACCGTTCATCA-CAACTGATGCCAACAAAA-GC-CCAGAT-ATTGAAGAATCTGATTG-ATAC-TGTAGTATG-TGATACTAGAG-CAAGATGCAGAGGTTTATTGA-TTGC-AAA-AATAC-AACAA-CAAAAGAGAAAA-A-TGAA-GAGAC-ACC--T-CACT-AAC----A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTTTTGTTTATGAAGACCTATCGTATCCCCCAGAAAAAGG-CCA-CC---CCTGA----TCTTCCACAACA--CATGCT-GCTGTCCCTGACT----GAGAGATTC-----AC---CATGGAGGATGTTA-GTCAGTT-AT-TG-AGTGTCAT-CACAGAAATCCAAATCCAAA-TCTTAA-CAGTA--A-AACGGCAAGTA-GCGATAG-ACGAGTGTGTGAA-ACTGACG-CCCAC-ACCTG-TATTACACG----CGTC--CGTCGGTG--TGATAG------GAGTTAGT--G------AAGT-GTGT-CACATATC--TCG-TGTGA--CGTCAGACCGGATCTGGGTA-TCTG----GTGGT---GATTAC--AATATTATCT---TGACAGA-CAC-AACAGGAGACACTATAGACTGT--GTGGCAGATA-T-AATACC---------------AAAAGGA-CCACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGGAAACATA-ACA-TCAA--C--AAACT-GT---C-GGTAGAC-AATAAAAT--AG-TCACCACC-CTGTTTGAGA--GATCTACATCACCATGGAAACCA--TGG-GGGGT-GTATTGCTCCCCATTC-ACAG-GAGATC-TGTTTGTCG-GGATGTATAAATA-TAACCCTG-AT-A----CAGAAACATGGACAGG-CAAGATAAACCGGTACAACAGTACAGGTCAACAC-ATAC-TGA-CCATACA-TCAC-AACACCA-C-AGGTAAAATAC
gi|4 : AGACACTTCCACATCATGAGACACACAGGGACTCAGTTACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-T-ACTGGT--GAAAAGAGA-GACATGTCA-T--G-GAATC---TA-C--A-TAATACCAAGCACC-ATGAAGGTTGTGATTT-ACCCG-TTG--AA---AGTGGTCT--AGTTTACATTCCCCATACAG--AATCTGT-TTAGACACCCAGACAGGATCAATTTTATGTTCTG-TCAGTCGTGTTCAGAA--TTTCTG-CCTGTG-CCGATG-GTTAGAGCACCGA--AAACACCAACT-TCTGAAACATTAGAACAGCCTTATTCAAACAAAGCGAGCAAACCAAACAC--GAGAAATTATTG-ACAAACAT---CAGAAGTGAAACTCTA-TA-AACCGTCTTGTTTCTTTTATCGGGAA-TTCCAAACTGATA-TCCAAAA--CTTGTCCCCCACAAATCTGTCCACCGTCAGTCA-CAACTGATGTTAGCAAAAAGC-CCAGAG-ACTGAAGCATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AAACAAGATGCATATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-AC-------CT-CACCCG-AATACAAAACT-AT-GAAGACAGATATG-AAAAATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-AA---TATTCCACAACA--CCTGCT-GCTGTCCCTGACT----GAGGGATTG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT-TTTC-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---TTACAGA-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TA-GAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACAC-AACGACA-C-CGGTCAggaatag
gi|5 : CAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGG-ACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGATATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTCTTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-CTTTTATCGGGAA-T-CCAAACTGATATCC--AAA--CTTGTCCCCCACAAATCTGTC-ACCGTCAGTCA-CAACTGATGTTAGCAAAA-AG-CCAGAG-ACTG-AGCATCTGATTG-A-ACATGT-GTATG-CGATGTTA-AA-CAAGATGCAGATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAA-TACAAAACT-AT-GAAGACAGATATG-AA-AATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCTAA----TATTCCACAACAC-C-TGCT-GCTGTCCCTGACTGAGGGA-----TG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT--TTT-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---T-ACAAG-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGAT--T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TAGAAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACACAAACGACA-C-CGGTCAagc
gi|6 : ttTCGTGTCCCCAAGA-AAAGGTAAA-CTGTATCT-G----T-GCCCGCAACCTCC-TGTTTGCTG-ACCTGATT----GA-----TG-----AATAACATAGACGATGTGAAGTCAATT-ACGTA-GATGGTATTCACAGAA-TCCAAATC---G-TC--AATCAAGATCACAACGACAA-TA-GAA-TAGTACGAGTGTGTGAATATTGACG-TCCAC-ACCTG-TATTAC-CG----C-TT--AAT-TGCAATTGGCAG------ATGTTAGTTCG------TTGT-GTTTACA-ATATC--TGG-TG-AA--CGTCAGACCGGGTCTGTTTA-TCTG----ATTAT---A---AA--AATTTC-TCT---TGACAGAACACCAACAGGAGACACAATACACCGT--GTGAC---TATT-AACATC---A---TGG--TATA-----A-ATAAGCACATGTGAA-AGTTCTGGTGAACTGATTTAT--TAGATAG-GAACGTA-AGATTCAAA-CCAAAACTGGT---CTTCTAGAC-AGTAAAAC--AGTTTACCACA-CTGTTAGAAG--CTCCTACATCAagca
gi|7 : aaatcagt-TGTAAAACACGACAATGTTCTCAATGTCA-GGGGGATTCCGA-GTTCTAC-TGTCGCA-CG-T-GTC-AA-TATGACCTGTG-T-CTGCAG-T--GTAAAGAGA-TACACGTTA-T--T-GT-TC---TA-G--G-TT---CCCCACAAC-AT-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTC--AAAT-CCGT-GTTCAAACAAGAAACCTGTGCGAGGCATCCAGACATGGTCTATGAAATATTTTG-CCGGCCGTGC---AAT-GTTCCTG-TGTGTATGCAATG-CTCAGACCACAGT--GGACATAAAAC-GATGGA-TCTTAAAACAGTAT-AC-GAAGCACTCCGT-CAA--CAA-CATA-GAACAGTCATTC-ATAG-AAT---TAGGGATGAAAGTCTC-TATAACTGCCATATC-CTCCTGACAGGAA-T-CGAAACGGAT--TT--AAA--CACGTGTCATGCAAACATCTC-ACAG--ATTCAGAAAAAGATGTCAATAAAA-TC-TCGGAG-AATAAAGCTTCtatgaggcct
gi|8 : G--TGAGAG------ATATTAGT--T------ATGT-GGCC-CACATTTCCCTCG-TCT----CAACAGACGAGCTTTGGGTG-AGTG----ATTTTTTTG---CC--AGGCTTATCT---TAGCTGA-CAC-AACAGGTACCACTCTAAATCGC--CTGACAGATA-CGGACCCCAGAA---TTATCTAT----GGA-TTTCACACG-ACCAGTAGTGCGGGTGAGCTGTTTTAC-ATAGACAGTGCACTTA-ACA-TCGG--C--AAACT-CT---C-TACTGCC-GACAATGCCAAG-T--CCATA-CTAATAAAGAATGA---ACA--ACCATGGATACCA--AAT-TGTGTCGTG-TGCTCCCCCTCC-ACTG-GAGATC-TGCTGGTCG-GGATG------AA-GAAAGTTG-ATCATTCCCAAA------AACAGGCCAAAATAAAGAGATACAAAAGCACAGGCCGACAC-GTCC-AGA-CCGTGGA-A-AC-GAa
gi|9 : tCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGC----GGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTATAA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---TCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGAGATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTTCTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACCGGAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-Caccaagccggggatagaatatacagttt
Alignments
lowQualScore : 1 1 1 1 1 1 1 1 3333333 1 11 1 1 2222 1 1 11 1 1 222 77777777777777 1 11 1 111 111 11 111 222 2222 111 55555555555555555555555 5555555555555555555555555555 111111 4444444444444444444 222222 1111 111 1111111 111111111 1111 111111111 111 1111111 1111 33333 111 1111111 2222222222 1111 111111 1
lowQualScore : 5 5 1 5 5 5 5 5 1 5 1111111 5 88 5 22 5 4444 5 5 1 88 3 3 3 111 33333333333333 7 0 33 3 0 3 0 0 5 5 1 5 4 1 5 8 4 4 3 3 3 3 3 4 4 1 8 55 4 4 8888 4 777 4 6666 222 11 4 88 4 4 4 4 55 777 55 55 4 4 44 44 222 5 000 22 5 1 5 77 0 66 5 5 5 0 5 77 5 66 5 5 000 5 3 5 1 1 999 5 5 0 5 66 888 5 5 5 1 6 1 6 1 77 0000 1 6 6 6 666 6 888 6 33333333333333333333333 6 6 6 2 6 6 6 1 5 5 5 4444444444444444444444444444 77 4 1 666666 0000000000000000000 7 22 5 5 5 5 1 22 5 4 222222 99 6 99 6 3 6 3 6 6 6 5 5 2222 111 1 66 5555555 1 777777777 5 1 5 0 66 5 1 66 1 5 0000 444444444 888 1 888 1 0 5 5 1 1 77 000 8888888 44 3 4444 5 1 1 5 1 0 5 5 4 33333 5 000 5 5 77 5 1 5 9999999 44 77 5 5 3 77 5 5 5 1 4444444444 22 5 5 2222 666666 5 22 2 0 5 1 5 5 1 5 5 0 6 6 1 1
lowQualScore : . . . . . . . . . . ....... . .. . .. . .... . . . .. . . . ... .............. . . .. . . . . . . . . . . . . . . . . . . . . . . . . .. . . .... . ... . .... ... .. . .. . . . . .. ... .. .. . . .. .. ... . ... .. . . . .. . .. . . . . . .. . .. . . ... . . . . . ... . . . . .. ... . . . . . . . . .. .... . . . . ... . ... . ....................... . . . . . . . . . . . ............................ .. . . ...... ................... . .. . . . . . .. . . ...... .. . .. . . . . . . . . . .... ... . .. ....... . ......... . . . . .. . . .. . . .... ......... ... . ... . . . . . . .. ... ....... .. . .... . . . . . . . . . ..... . ... . . .. . . . ....... .. .. . . . .. . . . . .......... .. . . .... ...... . .. . . . . . . . . . . . . . .
lowQualScore : 5 5 0 5 5 0 5 5 0 0 0000000 0 55 5 00 5 0000 0 5 0 33 3 3 7 000 33333333333333 3 0 88 2 0 2 8 8 7 7 0 7 4 0 3 0 0 0 6 6 6 6 6 0 0 2 0 55 0 0 6666 0 000 0 9999 555 33 0 88 0 0 0 0 55 000 55 55 0 0 99 66 777 7 000 33 7 0 7 99 7 77 7 7 7 1 7 99 7 44 7 7 000 7 0 7 7 4 444 7 7 7 0 99 888 0 7 7 0 7 0 7 0 33 7777 0 7 7 7 777 7 333 7 00000000000000000000000 7 7 7 5 7 7 7 0 4 7 7 4444444444444444444444444444 11 3 4 666666 4444444444444444444 9 11 7 7 7 7 9 33 7 9 888888 22 7 22 7 7 7 5 7 7 7 7 7 1111 999 4 99 6666666 4 555555555 0 0 0 2 99 0 4 99 4 0 6666 888888888 999 4 888 4 4 0 0 4 7 99 111 0000000 44 0 4444 7 4 6 7 4 4 7 7 3 00000 7 000 7 7 99 7 7 7 7777777 77 99 7 7 0 44 7 7 7 4 1111111111 00 7 7 1111 444444 7 33 0 7 7 0 7 7 0 7 7 7 7 7 0 0
consensus : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAACTGATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
Reference ( family-561 ) : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAAC-GATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
gi|1 : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAATGTGTGTATCTGTCTGATA-CATAATTAGG-GTTGTGGTTTTTTTCAC--TTATACTTTGTACTGTTCTTGGTTT-TTTTCAAGCAGATTGTATTCCTAGAGACCCAGAA-TCTCCACATCATG-GACACA-TAGGACTCAGT-ACACAGTTATAAAGTACGACATTGTTCTCAATGTCAGGGGGGACACCGA-GTTCTAC-TGTCACA-CGTT-GTA-AACCATG-CCTGTGCT-TTACTGATGAGTAAGAAGAGGACAGGTCA-T--GAAA-TT---AA-C--ATTA---CCATCCACCAATG-ATGTTGTTATCT-ACC-GTT-G--AGAAAAA--GTTTAAAACT-ATAT-CCCC-GACAAG--TTCTGTGTCCGACATCCAGACAGGATCTATGAAATGTTCTGTTCAGTCGTGT---GAACTTTTCTGTCCTGTTTCCGATGTTTTAGATCACCAATTATGGACCAACTAACTGAA-CA-TAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CA-C-GAGAAATCATTATACAA-CACATACAGAACTGAGAATCTCGTATAACTGTTGTGTT--TCCT-GCAGGAATT-CCAAACTGATACCAAAA-CTTTGT-CCCCACAAATCTGTC-ACCG--TCAATCACAGC--ATGGCAACAAAA-GCTCCAGAGAACTGAAGGATCTGATTGAACAC-TGTGGGATGTTGATACTACAA-CAA-ATACAGAAATTTATGTA-TTGCGTAGAAATACAAACAGCCAGAAGAGAAAATATTGAACCAGAC------C-GCCT-CACCCA-C-CACAAAACTGATAGAGGACAGATATGAAACAATCAGCACATACAAGAGTGCT-CA---TCTCTTGTTTATTAAAACCAGTCGTGTCCCCCAGATAAAGG-ACACCC---CCT-ATATCT-TTCAACAACA--C-TGCT-GC-GTCCTTGACT----GA-----GGATTCAAA---CATGGA-GATGTGA-GTCAGTTGAT-TGAGGGGGAAT-C-C-GAAATCCATAT----ATTC--AA-C-AGG--A-AACGACAAGTAGGAAATAG-ACGAGTGGTTGAA-ACTGACGATCCACAACCTGCTCTTA-ACAGAGTCGTCATAGTCTGCT--TGACAGTGTGTTGTATTACT--GGAGTTTACGTAGTTT----ATACC--TAGCTGTGAACCGTCAGACCGGGTCTGGGTATTCTGCCTCAAGAC---G---ACAAAATCTCACCTGCATGAC-GA-CAC-AACA-GAGACACTATACACCGTTAGTGACAACTA-G-A--ACC---AGGGTTATTAGCAGGAGGAGCTACAC-CA-GTCGACAGTTC-GGTGAACTGATTTATAATA-ACAGTAATGATACACA-TCAAT-CTAAAACT-GTTCAT-CATAGACAAATAAAAC--AT-TTACCACATTTGTTAGAGA--G--CTACATCCACATGGAGCCCATTCAG-TGTGT-TTACTG-TCCCCGTCCAACTA-GAGATC-TGA--ATCGCGGACGT-----TT-AAACAGTGCAT-A----CACT------GACAGG-CAAGAAATACC-GT-CAACAGTACAGGACAACATGGTAC-T-A-CTATACA-ATAC-AACAACA-CTCGGTCA
gi|10 : GGCAGGAA-T-CCAAACTGATATCCAAA-G-TTTGCCCTCACAAATCTGTC-ACCG--TAAATCACA---GATGTCAACAAAA-GC-CCAGAG-AATGAAGGATCTGATTG-ACAC-TGTGGTATT-TGAGGTTA----CAAGATACTGAGGTTTAGTGA-TTGC-CAG-AATTC-AACAA-CAGAAGAGAAAA-A-TGAA-CAGACAACT--TGTTTTATATC-----TACAGAACT-AT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTTGTGTACCCCAGATAAA-G-AC-----------------------CAA--------TC-G-TGTCCCCCA------GG-----TA-----AA------GGGCAGTTCTA-GTCAGTT-AT-TG-AATGCCAT-CACA
gi|11 : TG-TCT--GTTTATTTTC-GGCAGATTGTATTCCTAAAGGCAGTGAT-CATCCACATCATG-GACATACTAAAATTCAGT-ACACAG-TATAAAGTACGGCAGTGTTCTCAATGTCA-GGGGGACACCGA-GTTCTAC-T-TCCCACCG-T-GTA-AA-CAT-ATCTATG-T-TTACGG-T--GTAAA
gi|12 : acacttCAG-TGTAAAGTACGACATTGTT-TCAATGTCACAGGGGACACCGAAGTTCTACCTGTCACA-CG-T-GTA-AA-C-TG-CCTATG-TCTTACTG-T--GTA--GAAA-GGCATGCCAGTCAA-GA-TC---TA-TCAA-TAAC-CCAAACACC-ATGA---TCGTGATTTTACC-G-T-G--AG---AA--GTTT--AAAT-GTAT-CCCTTTACGAGAAAACTGTGTCAGACATCCAAACacgaagattattaacagaaaaaaccacaaatatcaccatgttaggttttgtttaac
gi|13 : cagCCTTGGCAACCA--TGGATGT-T-G-ACTGA--CCCGTC--GCTGCGAGATTATGATGGTCG-GGATG------TT-ATATACTG-AT-A----CAGA------GACAGG-CA-GATTAAACGGTACAACAGTACAGGACAACAC-GTGCTTGATCTATACATGCAC-GACAACATC-TGGTCACAAACTCTA
gi|14 : CACA-CG-TTGTA-AA-C-TGATTTGTG-T-TTACAT-C--GTAAAGA-A-GACAT-----T--G--A-TCAAATA-T----TA---CCATACACC-ATGGATGTTGT-ATGT-ATT-G-T-GTGAG---AT--GTTT--AACT-ACAT-TCCCCGACAAG--ATATGTGTCAGACATCCGAACagttat
gi|15 : C-ACCTG-TATTACACA----CGTC--CGTCTGTG--TGCCAA------ATGTTAAT--T------CTGT-GTAT-CACATATA--TGG-TGTTA--TGTCAGACCGAGTCTGGGTA-TCTG----GTAGA---C---AC--AGTCTCATCT---TGACAGA-CAC-AACAGtagagatgattt
gi|16 : AAAGAGA-TAC----C--T--T-GA-TC---AAAC--A-TA---CCATACGCC-ATGA----TGTGATGT-ATT-G-T-G--AG---AT--GTTT--AACT-ACGT-TCCCAGACAAGAAA--TGTGTCAAACATCCAAAC
gi|17 : AATGTCA-GGGGGACACCAA-GTTCTAC-TGTCTCA-CG-T-GTA-AA-CATGAtag
gi|18 : CACAAATCTATC-ATCA--TCGATTACA---GATGTCAACAAAA-
gi|2 : CTGT-TTGGGA-GCATAATGTTTCATAAAGT-CGTCCTCTTCATTTTTACAGTATCAAGAAT-CAC------AGTGC-TTTA--GGTAGAAAAATTCCACAGTT-TTGATC----ATGTTTATCATTTTCTTGTCATCC-TTTATTTCCTTTTCCTAC-ATTGATTACTAATATGTGTA--TGT-TAATAACATTATTATG--ATGTG----------CCATT-TACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACAGCATG-GACACACTAGGACTCAGT-ACACAG-TATAAAGTACGACATTGTTCTCAATGCCA-GGGGGACACCGA-ATTCTAC-TGTCACA-CG-T-GTA-AA-CATGACATGTG-T-TTACTC-T--GCAAAGAGA-GGCATGTCA-T--G-GA-TC---TA-C--A-TA---CAATCCACC-ATGAATGTTATGA-TT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCCGACAAGAAATTTGTGCCCGACATCCAGACAGGATCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTG-TCTGTTTCCGATG-TTTAGAGCACCGA--AAACACCAAAT-ATTGGA-CATTAGAACAGCCT-AT-CAA--AAAGCGA-CAA--CAA-CACC-GCGAAATCATTG-ACAA-CAT---CAGAAGTCAGACTATC-TATAACTGTCGTGTT-CTCCTGGCAGGAA-------------ATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACA---GATGTCAACAAAA-GC-CCAGAG-ACTGAAGGATCTGATTG-ACAC-TGTGGTATG-TGATGTT---A-C-AGATACAGAGGTTTATTGATTTGC-TAG-AATAC-AACAA-CAAAAGAGAAAA-C-TGAA-CAAACAACTTGT-TCTT-CATC---A--ACAGAACT-CT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCAGTCGTGTCCCCCAGAAAAAG----A-CC---C-------------------------GCC-G-TGTCCCCCA------GA-----TA-----AA------GGACAGTCCTA-GTCAGTT-AT-TA-AATGCAAT-CACAGAAATCCAACT----G-TC--AA-CAGGA--A-AACGGCAAGTA-GAATTAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTA-TATTACACG----TGTC--TGTCTGTG--TGACAG------ATGTTCGT--G------AAGT-GTAT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGATA-TCTG----ATGGT---G---AC--AATCTCATCT---TGGCAGA-CAC-AACAGGAGACACTATACACCGT--GTGACAGATA-C-AACTCC---A---TTGTATATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGATTACA-ACA-TCAAT----AAACT-GT---C-TATAGAC-AATAAAAC--AG-TCACCACA-CTGTTAGAGA--GGCTTACATCACCATGGTTACCA--CGG-AGTGT-GTACTGTTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------CA-TAACACTG-AT-A----CAAA------GACAGG-CAAGATATCCCGGTACAACAGTACAGGACAACAG-GTAC-TGA-CTATACA-GCAC-GACAACA-C-CGGGCACACACTGTA
gi|3 : AGTATATGCA--TGT-TAATA-CAAAATGACGAGGTGT-----------C--TTATACTTTAAAATT-TCT--GTTTATTTTC-AGCAGA---------------CCCAG-T-CCTCCACATCATG-GACACACTAGGACGCCTT-ACTCAA-TATAAAGTACGGGAGTGTTGTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGCCACA-CG-T-GTA-AA-TATGATCTGTG-T-TTCCAG-T--GTAAAGAGA-TACATGTCA-T--T-GA-TC---TA-C--A-TA---CCAAAGACC-AC-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAGATCTGTGTCCAACATCCGGAGAGGGTCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTT-TCTGTTTCCAATG-TTTAGAGCACCAA--AAACACCAAAT-AATGGA-CATTAGAACAGCCT-AT-CAAAGAAAGCGG-CAA--CAA-CACC-GGGAAATCATTA-ACAG-CAT---CAGAAGTGAGACTCTC-TATAACTGTCGTGTT-CTCCTGGCAAGAA-T-CCAAACTTATATTCAAA-C-TTGTCCGCCGCAAATATGGC-ACCG--TTCATCACAACTGATGCCAACAAAA-GC-CCAGAT-ATTGAAGAATCTGATTG-ATAC-TGTAGTATG-TGATACTAGAG-CAAGATGCAGAGGTTTATTGA-TTGC-AAA-AATAC-AACAA-CAAAAGAGAAAA-A-TGAA-GAGAC-ACC--T-CACT-AAC----A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTTTTGTTTATGAAGACCTATCGTATCCCCCAGAAAAAGG-CCA-CC---CCTGA----TCTTCCACAACA--CATGCT-GCTGTCCCTGACT----GAGAGATTC-----AC---CATGGAGGATGTTA-GTCAGTT-AT-TG-AGTGTCAT-CACAGAAATCCAAATCCAAA-TCTTAA-CAGTA--A-AACGGCAAGTA-GCGATAG-ACGAGTGTGTGAA-ACTGACG-CCCAC-ACCTG-TATTACACG----CGTC--CGTCGGTG--TGATAG------GAGTTAGT--G------AAGT-GTGT-CACATATC--TCG-TGTGA--CGTCAGACCGGATCTGGGTA-TCTG----GTGGT---GATTAC--AATATTATCT---TGACAGA-CAC-AACAGGAGACACTATAGACTGT--GTGGCAGATA-T-AATACC---------------AAAAGGA-CCACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGGAAACATA-ACA-TCAA--C--AAACT-GT---C-GGTAGAC-AATAAAAT--AG-TCACCACC-CTGTTTGAGA--GATCTACATCACCATGGAAACCA--TGG-GGGGT-GTATTGCTCCCCATTC-ACAG-GAGATC-TGTTTGTCG-GGATGTATAAATA-TAACCCTG-AT-A----CAGAAACATGGACAGG-CAAGATAAACCGGTACAACAGTACAGGTCAACAC-ATAC-TGA-CCATACA-TCAC-AACACCA-C-AGGTAAAATAC
gi|4 : AGACACTTCCACATCATGAGACACACAGGGACTCAGTTACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-T-ACTGGT--GAAAAGAGA-GACATGTCA-T--G-GAATC---TA-C--A-TAATACCAAGCACC-ATGAAGGTTGTGATTT-ACCCG-TTG--AA---AGTGGTCT--AGTTTACATTCCCCATACAG--AATCTGT-TTAGACACCCAGACAGGATCAATTTTATGTTCTG-TCAGTCGTGTTCAGAA--TTTCTG-CCTGTG-CCGATG-GTTAGAGCACCGA--AAACACCAACT-TCTGAAACATTAGAACAGCCTTATTCAAACAAAGCGAGCAAACCAAACAC--GAGAAATTATTG-ACAAACAT---CAGAAGTGAAACTCTA-TA-AACCGTCTTGTTTCTTTTATCGGGAA-TTCCAAACTGATATCCAAAAC-TTGTCCCCCACAAATCTGTCCACCG--TCAGTCACAACTGATGTTAGCAAAAAGC-CCAGAG-ACTGAAGCATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AAACAAGATGCATATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-AC-------CT-CACCCG-AATACAAAACT-AT-GAAGACAGATATG-AAAAATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-AA---TATTCCACAACA--CCTGCT-GCTGTCCCTGACT----GAGGGATTG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT-TTTC-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---TTACAGA-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TA-GAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACAC-AACGACA-C-CGGTCAggaatag
gi|5 : CAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGG-ACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGATATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTCTTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-CTTTTATCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAGTCACAACTGATGTTAGCAAAA-AG-CCAGAG-ACTG-AGCATCTGATTG-A-ACATGT-GTATG-CGATGTTA-AA-CAAGATGCAGATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAA-TACAAAACT-AT-GAAGACAGATATG-AA-AATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCTAA----TATTCCACAACAC-C-TGCT-GCTGTCCCTGACTGAGGGA-----TG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT--TTT-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---T-ACAAG-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGAT--T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TAGAAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACACAAACGACA-C-CGGTCAagc
gi|6 : ttTCGTGTCCCCAAGA-AAAGGTAAA-CTGTATCT-G----T-GCCCGCAACCTCC-TGTTTGCTG-ACCTGATT----GA-----TG-----AATAACATAGACGATGTGAAGTCAATT-ACGTA-GATGGTATTCACAGAA-TCCAAATC---G-TC--AATCAAGATCACAACGACAA-TA-GAA-TAGTACGAGTGTGTGAATATTGACG-TCCAC-ACCTG-TATTAC-CG----C-TT--AAT-TGCAATTGGCAG------ATGTTAGTTCG------TTGT-GTTTACA-ATATC--TGG-TG-AA--CGTCAGACCGGGTCTGTTTA-TCTG----ATTAT---A---AA--AATTTC-TCT---TGACAGAACACCAACAGGAGACACAATACACCGT--GTGAC---TATT-AACATC---A---TGG--TATA-----A-ATAAGCACATGTGAA-AGTTCTGGTGAACTGATTTAT--TAGATAG-GAACGTA-AGATTCAAA-CCAAAACTGGT---CTTCTAGAC-AGTAAAAC--AGTTTACCACA-CTGTTAGAAG--CTCCTACATCAagca
gi|7 : aaatcagt-TGTAAAACACGACAATGTTCTCAATGTCA-GGGGGATTCCGA-GTTCTAC-TGTCGCA-CG-T-GTC-AA-TATGACCTGTG-T-CTGCAG-T--GTAAAGAGA-TACACGTTA-T--T-GT-TC---TA-G--G-TT---CCCCACAAC-AT-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTC--AAAT-CCGT-GTTCAAACAAGAAACCTGTGCGAGGCATCCAGACATGGTCTATGAAATATTTTG-CCGGCCGTGC---AAT-GTTCCTG-TGTGTATGCAATG-CTCAGACCACAGT--GGACATAAAAC-GATGGA-TCTTAAAACAGTAT-AC-GAAGCACTCCGT-CAA--CAA-CATA-GAACAGTCATTC-ATAG-AAT---TAGGGATGAAAGTCTC-TATAACTGCCATATC-CTCCTGACAGGAA-T-CGAAACGGATTT--AAA-C-ACGTGTCATGCAAACATCTC-ACAGATTCAG--AAAAA-GATGTCAATAAAA-TC-TCGGAG-AATAAAGCTTCtatgaggcct
gi|8 : G--TGAGAG------ATATTAGT--T------ATGT-GGCC-CACATTTCCCTCG-TCT----CAACAGACGAGCTTTGGGTG-AGTG----ATTTTTTTG---CC--AGGCTTATCT---TAGCTGA-CAC-AACAGGTACCACTCTAAATCGC--CTGACAGATA-CGGACCCCAGAA---TTATCTAT----GGA-TTTCACACG-ACCAGTAGTGCGGGTGAGCTGTTTTAC-ATAGACAGTGCACTTA-ACA-TCGG--C--AAACT-CT---C-TACTGCC-GACAATGCCAAG-T--CCATA-CTAATAAAGAATGA---ACA--ACCATGGATACCA--AAT-TGTGTCGTG-TGCTCCCCCTCC-ACTG-GAGATC-TGCTGGTCG-GGATG------AA-GAAAGTTG-ATCATTCCCAAA------AACAGGCCAAAATAAAGAGATACAAAAGCACAGGCCGACAC-GTCC-AGA-CCGTGGA-A-AC-GAa
gi|9 : tCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGC----GGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTATAA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---TCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGAGATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTTCTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACCGGAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-Caccaagccggggatagaatatacagttt
Alignments
lowQualScore : 1 1 1 1 1 1 1 1 3333333 1 11 1 1 2222 1 1 11 1 1 222 77777777777777 1 11 1 111 111 11 111 222 2222 111 55555555555555555555555 5555555555555555555555555555 111111 4444444444444444444 222222 1111 111 1111111 111111111 1111 111111111 111 1111111 1111 33333 111 1111111 2222222222 1111 111111
lowQualScore : 5 5 1 5 5 5 5 5 1 5 1111111 5 88 5 22 5 4444 5 5 1 88 3 3 3 111 33333333333333 7 0 33 3 0 3 0 0 5 5 1 5 4 1 5 8 4 4 3 3 3 3 3 4 4 1 8 55 4 4 8888 4 777 4 6666 222 11 4 88 4 4 4 4 55 777 55 55 4 4 44 44 222 5 000 22 5 1 5 77 0 66 5 5 5 0 5 77 5 66 5 5 000 5 3 5 1 1 999 5 5 0 5 5 333 5 5 5 1 6 1 6 1 77 0000 1 6 6 6 666 6 888 6 33333333333333333333333 6 6 6 2 6 6 6 1 5 5 5 4444444444444444444444444444 77 4 1 666666 0000000000000000000 7 22 5 5 5 5 1 22 5 4 222222 99 6 99 6 3 6 3 6 6 6 5 5 2222 111 1 66 5555555 1 777777777 5 1 5 0 66 5 1 66 1 5 0000 444444444 888 1 888 1 0 5 5 1 1 77 000 8888888 44 3 4444 5 1 1 5 1 0 5 5 4 33333 5 000 5 5 77 5 1 5 6666666 44 77 5 5 3 77 5 5 5 1 4444444444 22 5 5 2222 666666 5 22 5 0 1 5 1 5 5 1 5 5 0 6 6 1 1
lowQualScore : . . . . . . . . . . ....... . .. . .. . .... . . . .. . . . ... .............. . . .. . . . . . . . . . . . . . . . . . . . . . . . . .. . . .... . ... . .... ... .. . .. . . . . .. ... .. .. . . .. .. ... . ... .. . . . .. . .. . . . . . .. . .. . . ... . . . . . ... . . . . . ... . . . . . . . . .. .... . . . . ... . ... . ....................... . . . . . . . . . . . ............................ .. . . ...... ................... . .. . . . . . .. . . ...... .. . .. . . . . . . . . . .... ... . .. ....... . ......... . . . . .. . . .. . . .... ......... ... . ... . . . . . . .. ... ....... .. . .... . . . . . . . . . ..... . ... . . .. . . . ....... .. .. . . . .. . . . . .......... .. . . .... ...... . .. . . . . . . . . . . . . . . .
lowQualScore : 5 5 0 5 5 0 5 5 0 0 0000000 0 55 5 00 5 0000 0 5 0 33 3 3 7 000 33333333333333 3 0 88 2 0 2 8 8 7 7 0 7 4 0 3 0 0 0 6 6 6 6 6 0 0 2 0 55 0 0 6666 0 000 0 9999 555 33 0 88 0 0 0 0 55 000 55 55 0 0 99 66 777 7 000 33 7 0 7 99 7 77 7 7 7 1 7 99 7 44 7 7 000 7 0 7 7 4 444 7 7 7 0 0 111 0 7 7 0 7 0 7 0 33 7777 0 7 7 7 777 7 333 7 00000000000000000000000 7 7 7 5 7 7 7 0 4 7 7 4444444444444444444444444444 11 3 4 666666 4444444444444444444 9 11 7 7 7 7 9 33 7 9 888888 22 7 22 7 7 7 5 7 7 7 7 7 1111 999 4 99 6666666 4 555555555 0 0 0 2 99 0 4 99 4 0 6666 888888888 999 4 888 4 4 0 0 4 7 99 111 0000000 44 0 4444 7 4 6 7 4 4 7 7 3 00000 7 000 7 7 99 7 7 7 1111111 77 99 7 7 0 44 7 7 7 4 1111111111 00 7 7 1111 444444 7 33 0 7 6 7 0 7 7 0 7 7 7 7 7 0 0
consensus : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCGTCAATCA-CAAC-GATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
Reference ( family-561 ) : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCGTCAATCA-CAACTGATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
gi|1 : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAATGTGTGTATCTGTCTGATA-CATAATTAGG-GTTGTGGTTTTTTTCAC--TTATACTTTGTACTGTTCTTGGTTT-TTTTCAAGCAGATTGTATTCCTAGAGACCCAGAA-TCTCCACATCATG-GACACA-TAGGACTCAGT-ACACAGTTATAAAGTACGACATTGTTCTCAATGTCAGGGGGGACACCGA-GTTCTAC-TGTCACA-CGTT-GTA-AACCATG-CCTGTGCT-TTACTGATGAGTAAGAAGAGGACAGGTCA-T--GAAA-TT---AA-C--ATTA---CCATCCACCAATG-ATGTTGTTATCT-ACC-GTT-G--AGAAAAA--GTTTAAAACT-ATAT-CCCC-GACAAG--TTCTGTGTCCGACATCCAGACAGGATCTATGAAATGTTCTGTTCAGTCGTGT---GAACTTTTCTGTCCTGTTTCCGATGTTTTAGATCACCAATTATGGACCAACTAACTGAA-CA-TAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CA-C-GAGAAATCATTATACAA-CACATACAGAACTGAGAATCTCGTATAACTGTTGTGTT--TCCT-GCAGGAATT-CCAAACTGATACCAAAA-CTTTGT-CCCCACAAATCTGTC-ACCGTCAATCA-CAGC--ATGGCAACAAAA-GCTCCAGAGAACTGAAGGATCTGATTGAACAC-TGTGGGATGTTGATACTACAA-CAA-ATACAGAAATTTATGTA-TTGCGTAGAAATACAAACAGCCAGAAGAGAAAATATTGAACCAGAC------C-GCCT-CACCCA-C-CACAAAACTGATAGAGGACAGATATGAAACAATCAGCACATACAAGAGTGCT-CA---TCTCTTGTTTATTAAAACCAGTCGTGTCCCCCAGATAAAGG-ACACCC---CCT-ATATCT-TTCAACAACA--C-TGCT-GC-GTCCTTGACT----GA-----GGATTCAAA---CATGGA-GATGTGA-GTCAGTTGAT-TGAGGGGGAAT-C-C-GAAATCCATAT----ATTC--AA-C-AGG--A-AACGACAAGTAGGAAATAG-ACGAGTGGTTGAA-ACTGACGATCCACAACCTGCTCTTA-ACAGAGTCGTCATAGTCTGCT--TGACAGTGTGTTGTATTACT--GGAGTTTACGTAGTTT----ATACC--TAGCTGTGAACCGTCAGACCGGGTCTGGGTATTCTGCCTCAAGAC---G---ACAAAATCTCACCTGCATGAC-GA-CAC-AACA-GAGACACTATACACCGTTAGTGACAACTA-G-A--ACC---AGGGTTATTAGCAGGAGGAGCTACAC-CA-GTCGACAGTTC-GGTGAACTGATTTATAATA-ACAGTAATGATACACA-TCAAT-CTAAAACT-GTTCAT-CATAGACAAATAAAAC--AT-TTACCACATTTGTTAGAGA--G--CTACATCCACATGGAGCCCATTCAG-TGTGT-TTACTG-TCCCCGTCCAACTA-GAGATC-TGA--ATCGCGGACGT-----TT-AAACAGTGCAT-A----CACT------GACAGG-CAAGAAATACC-GT-CAACAGTACAGGACAACATGGTAC-T-A-CTATACA-ATAC-AACAACA-CTCGGTCA
gi|10 : GGCAGGAA-T-CCAAACTGATATCCAAA-G-TTTGCCCTCACAAATCTGTC-ACCGTAAATCA-CA---GATGTCAACAAAA-GC-CCAGAG-AATGAAGGATCTGATTG-ACAC-TGTGGTATT-TGAGGTTA----CAAGATACTGAGGTTTAGTGA-TTGC-CAG-AATTC-AACAA-CAGAAGAGAAAA-A-TGAA-CAGACAACT--TGTTTTATATC-----TACAGAACT-AT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTTGTGTACCCCAGATAAA-G-AC-----------------------CAA--------TC-G-TGTCCCCCA------GG-----TA-----AA------GGGCAGTTCTA-GTCAGTT-AT-TG-AATGCCAT-CACA
gi|11 : TG-TCT--GTTTATTTTC-GGCAGATTGTATTCCTAAAGGCAGTGAT-CATCCACATCATG-GACATACTAAAATTCAGT-ACACAG-TATAAAGTACGGCAGTGTTCTCAATGTCA-GGGGGACACCGA-GTTCTAC-T-TCCCACCG-T-GTA-AA-CAT-ATCTATG-T-TTACGG-T--GTAAA
gi|12 : acacttCAG-TGTAAAGTACGACATTGTT-TCAATGTCACAGGGGACACCGAAGTTCTACCTGTCACA-CG-T-GTA-AA-C-TG-CCTATG-TCTTACTG-T--GTA--GAAA-GGCATGCCAGTCAA-GA-TC---TA-TCAA-TAAC-CCAAACACC-ATGA---TCGTGATTTTACC-G-T-G--AG---AA--GTTT--AAAT-GTAT-CCCTTTACGAGAAAACTGTGTCAGACATCCAAACacgaagattattaacagaaaaaaccacaaatatcaccatgttaggttttgtttaac
gi|13 : cagCCTTGGCAACCA--TGGATGT-T-G-ACTGA--CCCGTC--GCTGCGAGATTATGATGGTCG-GGATG------TT-ATATACTG-AT-A----CAGA------GACAGG-CA-GATTAAACGGTACAACAGTACAGGACAACAC-GTGCTTGATCTATACATGCAC-GACAACATC-TGGTCACAAACTCTA
gi|14 : CACA-CG-TTGTA-AA-C-TGATTTGTG-T-TTACAT-C--GTAAAGA-A-GACAT-----T--G--A-TCAAATA-T----TA---CCATACACC-ATGGATGTTGT-ATGT-ATT-G-T-GTGAG---AT--GTTT--AACT-ACAT-TCCCCGACAAG--ATATGTGTCAGACATCCGAACagttat
gi|15 : C-ACCTG-TATTACACA----CGTC--CGTCTGTG--TGCCAA------ATGTTAAT--T------CTGT-GTAT-CACATATA--TGG-TGTTA--TGTCAGACCGAGTCTGGGTA-TCTG----GTAGA---C---AC--AGTCTCATCT---TGACAGA-CAC-AACAGtagagatgattt
gi|16 : AAAGAGA-TAC----C--T--T-GA-TC---AAAC--A-TA---CCATACGCC-ATGA----TGTGATGT-ATT-G-T-G--AG---AT--GTTT--AACT-ACGT-TCCCAGACAAGAAA--TGTGTCAAACATCCAAAC
gi|17 : AATGTCA-GGGGGACACCAA-GTTCTAC-TGTCTCA-CG-T-GTA-AA-CATGAtag
gi|18 : CACAAATCTATC-ATCATCGATTA-CA---GATGTCAACAAAA-
gi|2 : CTGT-TTGGGA-GCATAATGTTTCATAAAGT-CGTCCTCTTCATTTTTACAGTATCAAGAAT-CAC------AGTGC-TTTA--GGTAGAAAAATTCCACAGTT-TTGATC----ATGTTTATCATTTTCTTGTCATCC-TTTATTTCCTTTTCCTAC-ATTGATTACTAATATGTGTA--TGT-TAATAACATTATTATG--ATGTG----------CCATT-TACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACAGCATG-GACACACTAGGACTCAGT-ACACAG-TATAAAGTACGACATTGTTCTCAATGCCA-GGGGGACACCGA-ATTCTAC-TGTCACA-CG-T-GTA-AA-CATGACATGTG-T-TTACTC-T--GCAAAGAGA-GGCATGTCA-T--G-GA-TC---TA-C--A-TA---CAATCCACC-ATGAATGTTATGA-TT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCCGACAAGAAATTTGTGCCCGACATCCAGACAGGATCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTG-TCTGTTTCCGATG-TTTAGAGCACCGA--AAACACCAAAT-ATTGGA-CATTAGAACAGCCT-AT-CAA--AAAGCGA-CAA--CAA-CACC-GCGAAATCATTG-ACAA-CAT---CAGAAGTCAGACTATC-TATAACTGTCGTGTT-CTCCTGGCAGGAA-------------ATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCGTCAATCA-CA---GATGTCAACAAAA-GC-CCAGAG-ACTGAAGGATCTGATTG-ACAC-TGTGGTATG-TGATGTT---A-C-AGATACAGAGGTTTATTGATTTGC-TAG-AATAC-AACAA-CAAAAGAGAAAA-C-TGAA-CAAACAACTTGT-TCTT-CATC---A--ACAGAACT-CT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCAGTCGTGTCCCCCAGAAAAAG----A-CC---C-------------------------GCC-G-TGTCCCCCA------GA-----TA-----AA------GGACAGTCCTA-GTCAGTT-AT-TA-AATGCAAT-CACAGAAATCCAACT----G-TC--AA-CAGGA--A-AACGGCAAGTA-GAATTAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTA-TATTACACG----TGTC--TGTCTGTG--TGACAG------ATGTTCGT--G------AAGT-GTAT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGATA-TCTG----ATGGT---G---AC--AATCTCATCT---TGGCAGA-CAC-AACAGGAGACACTATACACCGT--GTGACAGATA-C-AACTCC---A---TTGTATATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGATTACA-ACA-TCAAT----AAACT-GT---C-TATAGAC-AATAAAAC--AG-TCACCACA-CTGTTAGAGA--GGCTTACATCACCATGGTTACCA--CGG-AGTGT-GTACTGTTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------CA-TAACACTG-AT-A----CAAA------GACAGG-CAAGATATCCCGGTACAACAGTACAGGACAACAG-GTAC-TGA-CTATACA-GCAC-GACAACA-C-CGGGCACACACTGTA
gi|3 : AGTATATGCA--TGT-TAATA-CAAAATGACGAGGTGT-----------C--TTATACTTTAAAATT-TCT--GTTTATTTTC-AGCAGA---------------CCCAG-T-CCTCCACATCATG-GACACACTAGGACGCCTT-ACTCAA-TATAAAGTACGGGAGTGTTGTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGCCACA-CG-T-GTA-AA-TATGATCTGTG-T-TTCCAG-T--GTAAAGAGA-TACATGTCA-T--T-GA-TC---TA-C--A-TA---CCAAAGACC-AC-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAGATCTGTGTCCAACATCCGGAGAGGGTCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTT-TCTGTTTCCAATG-TTTAGAGCACCAA--AAACACCAAAT-AATGGA-CATTAGAACAGCCT-AT-CAAAGAAAGCGG-CAA--CAA-CACC-GGGAAATCATTA-ACAG-CAT---CAGAAGTGAGACTCTC-TATAACTGTCGTGTT-CTCCTGGCAAGAA-T-CCAAACTTATATTCAAA-C-TTGTCCGCCGCAAATATGGC-ACCGTTCATCA-CAACTGATGCCAACAAAA-GC-CCAGAT-ATTGAAGAATCTGATTG-ATAC-TGTAGTATG-TGATACTAGAG-CAAGATGCAGAGGTTTATTGA-TTGC-AAA-AATAC-AACAA-CAAAAGAGAAAA-A-TGAA-GAGAC-ACC--T-CACT-AAC----A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTTTTGTTTATGAAGACCTATCGTATCCCCCAGAAAAAGG-CCA-CC---CCTGA----TCTTCCACAACA--CATGCT-GCTGTCCCTGACT----GAGAGATTC-----AC---CATGGAGGATGTTA-GTCAGTT-AT-TG-AGTGTCAT-CACAGAAATCCAAATCCAAA-TCTTAA-CAGTA--A-AACGGCAAGTA-GCGATAG-ACGAGTGTGTGAA-ACTGACG-CCCAC-ACCTG-TATTACACG----CGTC--CGTCGGTG--TGATAG------GAGTTAGT--G------AAGT-GTGT-CACATATC--TCG-TGTGA--CGTCAGACCGGATCTGGGTA-TCTG----GTGGT---GATTAC--AATATTATCT---TGACAGA-CAC-AACAGGAGACACTATAGACTGT--GTGGCAGATA-T-AATACC---------------AAAAGGA-CCACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGGAAACATA-ACA-TCAA--C--AAACT-GT---C-GGTAGAC-AATAAAAT--AG-TCACCACC-CTGTTTGAGA--GATCTACATCACCATGGAAACCA--TGG-GGGGT-GTATTGCTCCCCATTC-ACAG-GAGATC-TGTTTGTCG-GGATGTATAAATA-TAACCCTG-AT-A----CAGAAACATGGACAGG-CAAGATAAACCGGTACAACAGTACAGGTCAACAC-ATAC-TGA-CCATACA-TCAC-AACACCA-C-AGGTAAAATAC
gi|4 : AGACACTTCCACATCATGAGACACACAGGGACTCAGTTACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-T-ACTGGT--GAAAAGAGA-GACATGTCA-T--G-GAATC---TA-C--A-TAATACCAAGCACC-ATGAAGGTTGTGATTT-ACCCG-TTG--AA---AGTGGTCT--AGTTTACATTCCCCATACAG--AATCTGT-TTAGACACCCAGACAGGATCAATTTTATGTTCTG-TCAGTCGTGTTCAGAA--TTTCTG-CCTGTG-CCGATG-GTTAGAGCACCGA--AAACACCAACT-TCTGAAACATTAGAACAGCCTTATTCAAACAAAGCGAGCAAACCAAACAC--GAGAAATTATTG-ACAAACAT---CAGAAGTGAAACTCTA-TA-AACCGTCTTGTTTCTTTTATCGGGAA-TTCCAAACTGATATCCAAAAC-TTGTCCCCCACAAATCTGTCCACCGTCAGTCA-CAACTGATGTTAGCAAAAAGC-CCAGAG-ACTGAAGCATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AAACAAGATGCATATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-AC-------CT-CACCCG-AATACAAAACT-AT-GAAGACAGATATG-AAAAATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-AA---TATTCCACAACA--CCTGCT-GCTGTCCCTGACT----GAGGGATTG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT-TTTC-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---TTACAGA-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GACC---ATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TA-GAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGTACAACA-------------C-ATTT-TGA-CAATGCA-ACAC-AACGACA-C-CGGTCAggaatag
gi|5 : CAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGG-ACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGATATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTCTTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-CTTTTATCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCGTCAGTCA-CAACTGATGTTAGCAAAA-AG-CCAGAG-ACTG-AGCATCTGATTG-A-ACATGT-GTATG-CGATGTTA-AA-CAAGATGCAGATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAA-TACAAAACT-AT-GAAGACAGATATG-AA-AATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCTAA----TATTCCACAACAC-C-TGCT-GCTGTCCCTGACTGAGGGA-----TG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT--TTT-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---T-ACAAG-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGAT--T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TAGAAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACACAAACGACA-C-CGGTCAagc
gi|6 : ttTCGTGTCCCCAAGA-AAAGGTAAA-CTGTATCT-G----T-GCCCGCAACCTCC-TGTTTGCTG-ACCTGATT----GA-----TG-----AATAACATAGACGATGTGAAGTCAATT-ACGTA-GATGGTATTCACAGAA-TCCAAATC---G-TC--AATCAAGATCACAACGACAA-TA-GAA-TAGTACGAGTGTGTGAATATTGACG-TCCAC-ACCTG-TATTAC-CG----C-TT--AAT-TGCAATTGGCAG------ATGTTAGTTCG------TTGT-GTTTACA-ATATC--TGG-TG-AA--CGTCAGACCGGGTCTGTTTA-TCTG----ATTAT---A---AA--AATTTC-TCT---TGACAGAACACCAACAGGAGACACAATACACCGT--GTGAC---TATT-AACATC---A---TGG--TATA-----A-ATAAGCACATGTGAA-AGTTCTGGTGAACTGATTTAT--TAGATAG-GAACGTA-AGATTCAAA-CCAAAACTGGT---CTTCTAGAC-AGTAAAAC--AGTTTACCACA-CTGTTAGAAG--CTCCTACATCAagca
gi|7 : aaatcagt-TGTAAAACACGACAATGTTCTCAATGTCA-GGGGGATTCCGA-GTTCTAC-TGTCGCA-CG-T-GTC-AA-TATGACCTGTG-T-CTGCAG-T--GTAAAGAGA-TACACGTTA-T--T-GT-TC---TA-G--G-TT---CCCCACAAC-AT-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTC--AAAT-CCGT-GTTCAAACAAGAAACCTGTGCGAGGCATCCAGACATGGTCTATGAAATATTTTG-CCGGCCGTGC---AAT-GTTCCTG-TGTGTATGCAATG-CTCAGACCACAGT--GGACATAAAAC-GATGGA-TCTTAAAACAGTAT-AC-GAAGCACTCCGT-CAA--CAA-CATA-GAACAGTCATTC-ATAG-AAT---TAGGGATGAAAGTCTC-TATAACTGCCATATC-CTCCTGACAGGAA-T-CGAAACGGATTT--AAA-C-ACGTGTCATGCAAACATCTC-ACAG--ATTCAGAAAAAGATGTCAATAAAA-TC-TCGGAG-AATAAAGCTTCtatgaggcct
gi|8 : G--TGAGAG------ATATTAGT--T------ATGT-GGCC-CACATTTCCCTCG-TCT----CAACAGACGAGCTTTGGGTG-AGTG----ATTTTTTTG---CC--AGGCTTATCT---TAGCTGA-CAC-AACAGGTACCACTCTAAATCGC--CTGACAGATA-CGGACCCCAGAA---TTATCTAT----GGA-TTTCACACG-ACCAGTAGTGCGGGTGAGCTGTTTTAC-ATAGACAGTGCACTTA-ACA-TCGG--C--AAACT-CT---C-TACTGCC-GACAATGCCAAG-T--CCATA-CTAATAAAGAATGA---ACA--ACCATGGATACCA--AAT-TGTGTCGTG-TGCTCCCCCTCC-ACTG-GAGATC-TGCTGGTCG-GGATG------AA-GAAAGTTG-ATCATTCCCAAA------AACAGGCCAAAATAAAGAGATACAAAAGCACAGGCCGACAC-GTCC-AGA-CCGTGGA-A-AC-GAa
gi|9 : tCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGC----GGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTATAA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---TCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGAGATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTTCTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACCGGAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-Caccaagccggggatagaatatacagttt
Alignments
lowQualScore : 1 1 1 1 1 1 1 1 3333333 1 11 1 1 2222 1 1 11 1 1 222 77777777777777 1 11 1 111 111 11 111 222 2222 111 55555555555555555555555 5555555555555555555555555555 111111 4444444444444444444 222222 1111 111 1111111 111111111 1111 111111111 111 1111111 1111 33333 111 1111111 2222222222 1111 111111 1
lowQualScore : 5 5 1 5 5 5 5 5 1 5 1111111 5 88 5 22 5 4444 5 5 1 88 3 3 3 111 33333333333333 7 0 33 3 0 3 0 0 5 5 1 5 4 1 5 8 4 4 3 3 3 3 3 4 4 1 8 55 4 4 8888 4 777 4 6666 222 11 4 88 4 4 4 4 55 777 55 55 4 4 44 44 222 5 000 22 5 1 5 77 0 66 5 5 5 0 5 77 5 66 5 5 000 5 3 5 1 1 999 5 5 0 5 66 888 5 5 5 1 6 1 6 1 77 0000 1 6 6 6 666 6 888 6 33333333333333333333333 6 6 6 2 6 6 6 1 5 5 5 4444444444444444444444444444 77 4 1 666666 0000000000000000000 7 22 5 5 5 5 1 22 5 4 222222 99 6 99 6 3 6 3 6 6 6 5 5 2222 111 1 66 5555555 1 777777777 5 1 5 0 66 5 1 66 1 5 0000 444444444 888 1 888 1 0 5 5 1 1 77 000 8888888 44 3 4444 5 1 1 5 1 0 5 5 4 33333 5 000 5 5 77 5 1 5 9999999 44 77 5 5 3 77 5 5 5 1 4444444444 22 5 5 2222 666666 5 22 2 0 5 1 5 5 1 5 5 0 6 6 1 1
lowQualScore : . . . . . . . . . . ....... . .. . .. . .... . . . .. . . . ... .............. . . .. . . . . . . . . . . . . . . . . . . . . . . . . .. . . .... . ... . .... ... .. . .. . . . . .. ... .. .. . . .. .. ... . ... .. . . . .. . .. . . . . . .. . .. . . ... . . . . . ... . . . . .. ... . . . . . . . . .. .... . . . . ... . ... . ....................... . . . . . . . . . . . ............................ .. . . ...... ................... . .. . . . . . .. . . ...... .. . .. . . . . . . . . . .... ... . .. ....... . ......... . . . . .. . . .. . . .... ......... ... . ... . . . . . . .. ... ....... .. . .... . . . . . . . . . ..... . ... . . .. . . . ....... .. .. . . . .. . . . . .......... .. . . .... ...... . .. . . . . . . . . . . . . . .
lowQualScore : 5 5 0 5 5 0 5 5 0 0 0000000 0 55 5 00 5 0000 0 5 0 33 3 3 7 000 33333333333333 3 0 88 2 0 2 8 8 7 7 0 7 4 0 3 0 0 0 6 6 6 6 6 0 0 2 0 55 0 0 6666 0 000 0 9999 555 33 0 88 0 0 0 0 55 000 55 55 0 0 99 66 777 7 000 33 7 0 7 99 7 77 7 7 7 1 7 99 7 44 7 7 000 7 0 7 7 4 444 7 7 7 0 99 888 0 7 7 0 7 0 7 0 33 7777 0 7 7 7 777 7 333 7 00000000000000000000000 7 7 7 5 7 7 7 0 4 7 7 4444444444444444444444444444 11 3 4 666666 4444444444444444444 9 11 7 7 7 7 9 33 7 9 888888 22 7 22 7 7 7 5 7 7 7 7 7 1111 999 4 99 6666666 4 555555555 0 0 0 2 99 0 4 99 4 0 6666 888888888 999 4 888 4 4 0 0 4 7 99 111 0000000 44 0 4444 7 4 6 7 4 4 7 7 3 00000 7 000 7 7 99 7 7 7 7777777 77 99 7 7 0 44 7 7 7 4 1111111111 00 7 7 1111 444444 7 33 0 7 7 0 7 7 0 7 7 7 7 7 0 0
consensus : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAACTGATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
Reference ( family-561 ) : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAAC-GATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
gi|1 : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAATGTGTGTATCTGTCTGATA-CATAATTAGG-GTTGTGGTTTTTTTCAC--TTATACTTTGTACTGTTCTTGGTTT-TTTTCAAGCAGATTGTATTCCTAGAGACCCAGAA-TCTCCACATCATG-GACACA-TAGGACTCAGT-ACACAGTTATAAAGTACGACATTGTTCTCAATGTCAGGGGGGACACCGA-GTTCTAC-TGTCACA-CGTT-GTA-AACCATG-CCTGTGCT-TTACTGATGAGTAAGAAGAGGACAGGTCA-T--GAAA-TT---AA-C--ATTA---CCATCCACCAATG-ATGTTGTTATCT-ACC-GTT-G--AGAAAAA--GTTTAAAACT-ATAT-CCCC-GACAAG--TTCTGTGTCCGACATCCAGACAGGATCTATGAAATGTTCTGTTCAGTCGTGT---GAACTTTTCTGTCCTGTTTCCGATGTTTTAGATCACCAATTATGGACCAACTAACTGAA-CA-TAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CA-C-GAGAAATCATTATACAA-CACATACAGAACTGAGAATCTCGTATAACTGTTGTGTT--TCCT-GCAGGAATT-CCAAACTGATACCAAAA-CTTTGT-CCCCACAAATCTGTC-ACCG--TCAATCACAGC--ATGGCAACAAAA-GCTCCAGAGAACTGAAGGATCTGATTGAACAC-TGTGGGATGTTGATACTACAA-CAA-ATACAGAAATTTATGTA-TTGCGTAGAAATACAAACAGCCAGAAGAGAAAATATTGAACCAGAC------C-GCCT-CACCCA-C-CACAAAACTGATAGAGGACAGATATGAAACAATCAGCACATACAAGAGTGCT-CA---TCTCTTGTTTATTAAAACCAGTCGTGTCCCCCAGATAAAGG-ACACCC---CCT-ATATCT-TTCAACAACA--C-TGCT-GC-GTCCTTGACT----GA-----GGATTCAAA---CATGGA-GATGTGA-GTCAGTTGAT-TGAGGGGGAAT-C-C-GAAATCCATAT----ATTC--AA-C-AGG--A-AACGACAAGTAGGAAATAG-ACGAGTGGTTGAA-ACTGACGATCCACAACCTGCTCTTA-ACAGAGTCGTCATAGTCTGCT--TGACAGTGTGTTGTATTACT--GGAGTTTACGTAGTTT----ATACC--TAGCTGTGAACCGTCAGACCGGGTCTGGGTATTCTGCCTCAAGAC---G---ACAAAATCTCACCTGCATGAC-GA-CAC-AACA-GAGACACTATACACCGTTAGTGACAACTA-G-A--ACC---AGGGTTATTAGCAGGAGGAGCTACAC-CA-GTCGACAGTTC-GGTGAACTGATTTATAATA-ACAGTAATGATACACA-TCAAT-CTAAAACT-GTTCAT-CATAGACAAATAAAAC--AT-TTACCACATTTGTTAGAGA--G--CTACATCCACATGGAGCCCATTCAG-TGTGT-TTACTG-TCCCCGTCCAACTA-GAGATC-TGA--ATCGCGGACGT-----TT-AAACAGTGCAT-A----CACT------GACAGG-CAAGAAATACC-GT-CAACAGTACAGGACAACATGGTAC-T-A-CTATACA-ATAC-AACAACA-CTCGGTCA
gi|10 : GGCAGGAA-T-CCAAACTGATATCCAAA-G-TTTGCCCTCACAAATCTGTC-ACCG--TAAATCACA---GATGTCAACAAAA-GC-CCAGAG-AATGAAGGATCTGATTG-ACAC-TGTGGTATT-TGAGGTTA----CAAGATACTGAGGTTTAGTGA-TTGC-CAG-AATTC-AACAA-CAGAAGAGAAAA-A-TGAA-CAGACAACT--TGTTTTATATC-----TACAGAACT-AT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTTGTGTACCCCAGATAAA-G-AC-----------------------CAA--------TC-G-TGTCCCCCA------GG-----TA-----AA------GGGCAGTTCTA-GTCAGTT-AT-TG-AATGCCAT-CACA
gi|11 : TG-TCT--GTTTATTTTC-GGCAGATTGTATTCCTAAAGGCAGTGAT-CATCCACATCATG-GACATACTAAAATTCAGT-ACACAG-TATAAAGTACGGCAGTGTTCTCAATGTCA-GGGGGACACCGA-GTTCTAC-T-TCCCACCG-T-GTA-AA-CAT-ATCTATG-T-TTACGG-T--GTAAA
gi|12 : acacttCAG-TGTAAAGTACGACATTGTT-TCAATGTCACAGGGGACACCGAAGTTCTACCTGTCACA-CG-T-GTA-AA-C-TG-CCTATG-TCTTACTG-T--GTA--GAAA-GGCATGCCAGTCAA-GA-TC---TA-TCAA-TAAC-CCAAACACC-ATGA---TCGTGATTTTACC-G-T-G--AG---AA--GTTT--AAAT-GTAT-CCCTTTACGAGAAAACTGTGTCAGACATCCAAACacgaagattattaacagaaaaaaccacaaatatcaccatgttaggttttgtttaac
gi|13 : cagCCTTGGCAACCA--TGGATGT-T-G-ACTGA--CCCGTC--GCTGCGAGATTATGATGGTCG-GGATG------TT-ATATACTG-AT-A----CAGA------GACAGG-CA-GATTAAACGGTACAACAGTACAGGACAACAC-GTGCTTGATCTATACATGCAC-GACAACATC-TGGTCACAAACTCTA
gi|14 : CACA-CG-TTGTA-AA-C-TGATTTGTG-T-TTACAT-C--GTAAAGA-A-GACAT-----T--G--A-TCAAATA-T----TA---CCATACACC-ATGGATGTTGT-ATGT-ATT-G-T-GTGAG---AT--GTTT--AACT-ACAT-TCCCCGACAAG--ATATGTGTCAGACATCCGAACagttat
gi|15 : C-ACCTG-TATTACACA----CGTC--CGTCTGTG--TGCCAA------ATGTTAAT--T------CTGT-GTAT-CACATATA--TGG-TGTTA--TGTCAGACCGAGTCTGGGTA-TCTG----GTAGA---C---AC--AGTCTCATCT---TGACAGA-CAC-AACAGtagagatgattt
gi|16 : AAAGAGA-TAC----C--T--T-GA-TC---AAAC--A-TA---CCATACGCC-ATGA----TGTGATGT-ATT-G-T-G--AG---AT--GTTT--AACT-ACGT-TCCCAGACAAGAAA--TGTGTCAAACATCCAAAC
gi|17 : AATGTCA-GGGGGACACCAA-GTTCTAC-TGTCTCA-CG-T-GTA-AA-CATGAtag
gi|18 : CACAAATCTATC-ATCA--TCGATTACA---GATGTCAACAAAA-
gi|2 : CTGT-TTGGGA-GCATAATGTTTCATAAAGT-CGTCCTCTTCATTTTTACAGTATCAAGAAT-CAC------AGTGC-TTTA--GGTAGAAAAATTCCACAGTT-TTGATC----ATGTTTATCATTTTCTTGTCATCC-TTTATTTCCTTTTCCTAC-ATTGATTACTAATATGTGTA--TGT-TAATAACATTATTATG--ATGTG----------CCATT-TACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACAGCATG-GACACACTAGGACTCAGT-ACACAG-TATAAAGTACGACATTGTTCTCAATGCCA-GGGGGACACCGA-ATTCTAC-TGTCACA-CG-T-GTA-AA-CATGACATGTG-T-TTACTC-T--GCAAAGAGA-GGCATGTCA-T--G-GA-TC---TA-C--A-TA---CAATCCACC-ATGAATGTTATGA-TT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCCGACAAGAAATTTGTGCCCGACATCCAGACAGGATCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTG-TCTGTTTCCGATG-TTTAGAGCACCGA--AAACACCAAAT-ATTGGA-CATTAGAACAGCCT-AT-CAA--AAAGCGA-CAA--CAA-CACC-GCGAAATCATTG-ACAA-CAT---CAGAAGTCAGACTATC-TATAACTGTCGTGTT-CTCCTGGCAGGAA-------------ATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACA---GATGTCAACAAAA-GC-CCAGAG-ACTGAAGGATCTGATTG-ACAC-TGTGGTATG-TGATGTT---A-C-AGATACAGAGGTTTATTGATTTGC-TAG-AATAC-AACAA-CAAAAGAGAAAA-C-TGAA-CAAACAACTTGT-TCTT-CATC---A--ACAGAACT-CT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCAGTCGTGTCCCCCAGAAAAAG----A-CC---C-------------------------GCC-G-TGTCCCCCA------GA-----TA-----AA------GGACAGTCCTA-GTCAGTT-AT-TA-AATGCAAT-CACAGAAATCCAACT----G-TC--AA-CAGGA--A-AACGGCAAGTA-GAATTAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTA-TATTACACG----TGTC--TGTCTGTG--TGACAG------ATGTTCGT--G------AAGT-GTAT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGATA-TCTG----ATGGT---G---AC--AATCTCATCT---TGGCAGA-CAC-AACAGGAGACACTATACACCGT--GTGACAGATA-C-AACTCC---A---TTGTATATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGATTACA-ACA-TCAAT----AAACT-GT---C-TATAGAC-AATAAAAC--AG-TCACCACA-CTGTTAGAGA--GGCTTACATCACCATGGTTACCA--CGG-AGTGT-GTACTGTTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------CA-TAACACTG-AT-A----CAAA------GACAGG-CAAGATATCCCGGTACAACAGTACAGGACAACAG-GTAC-TGA-CTATACA-GCAC-GACAACA-C-CGGGCACACACTGTA
gi|3 : AGTATATGCA--TGT-TAATA-CAAAATGACGAGGTGT-----------C--TTATACTTTAAAATT-TCT--GTTTATTTTC-AGCAGA---------------CCCAG-T-CCTCCACATCATG-GACACACTAGGACGCCTT-ACTCAA-TATAAAGTACGGGAGTGTTGTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGCCACA-CG-T-GTA-AA-TATGATCTGTG-T-TTCCAG-T--GTAAAGAGA-TACATGTCA-T--T-GA-TC---TA-C--A-TA---CCAAAGACC-AC-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAGATCTGTGTCCAACATCCGGAGAGGGTCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTT-TCTGTTTCCAATG-TTTAGAGCACCAA--AAACACCAAAT-AATGGA-CATTAGAACAGCCT-AT-CAAAGAAAGCGG-CAA--CAA-CACC-GGGAAATCATTA-ACAG-CAT---CAGAAGTGAGACTCTC-TATAACTGTCGTGTT-CTCCTGGCAAGAA-T-CCAAACTTATATTCAAA-C-TTGTCCGCCGCAAATATGGC-ACCG--TTCATCACAACTGATGCCAACAAAA-GC-CCAGAT-ATTGAAGAATCTGATTG-ATAC-TGTAGTATG-TGATACTAGAG-CAAGATGCAGAGGTTTATTGA-TTGC-AAA-AATAC-AACAA-CAAAAGAGAAAA-A-TGAA-GAGAC-ACC--T-CACT-AAC----A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTTTTGTTTATGAAGACCTATCGTATCCCCCAGAAAAAGG-CCA-CC---CCTGA----TCTTCCACAACA--CATGCT-GCTGTCCCTGACT----GAGAGATTC-----AC---CATGGAGGATGTTA-GTCAGTT-AT-TG-AGTGTCAT-CACAGAAATCCAAATCCAAA-TCTTAA-CAGTA--A-AACGGCAAGTA-GCGATAG-ACGAGTGTGTGAA-ACTGACG-CCCAC-ACCTG-TATTACACG----CGTC--CGTCGGTG--TGATAG------GAGTTAGT--G------AAGT-GTGT-CACATATC--TCG-TGTGA--CGTCAGACCGGATCTGGGTA-TCTG----GTGGT---GATTAC--AATATTATCT---TGACAGA-CAC-AACAGGAGACACTATAGACTGT--GTGGCAGATA-T-AATACC---------------AAAAGGA-CCACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGGAAACATA-ACA-TCAA--C--AAACT-GT---C-GGTAGAC-AATAAAAT--AG-TCACCACC-CTGTTTGAGA--GATCTACATCACCATGGAAACCA--TGG-GGGGT-GTATTGCTCCCCATTC-ACAG-GAGATC-TGTTTGTCG-GGATGTATAAATA-TAACCCTG-AT-A----CAGAAACATGGACAGG-CAAGATAAACCGGTACAACAGTACAGGTCAACAC-ATAC-TGA-CCATACA-TCAC-AACACCA-C-AGGTAAAATAC
gi|4 : AGACACTTCCACATCATGAGACACACAGGGACTCAGTTACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-T-ACTGGT--GAAAAGAGA-GACATGTCA-T--G-GAATC---TA-C--A-TAATACCAAGCACC-ATGAAGGTTGTGATTT-ACCCG-TTG--AA---AGTGGTCT--AGTTTACATTCCCCATACAG--AATCTGT-TTAGACACCCAGACAGGATCAATTTTATGTTCTG-TCAGTCGTGTTCAGAA--TTTCTG-CCTGTG-CCGATG-GTTAGAGCACCGA--AAACACCAACT-TCTGAAACATTAGAACAGCCTTATTCAAACAAAGCGAGCAAACCAAACAC--GAGAAATTATTG-ACAAACAT---CAGAAGTGAAACTCTA-TA-AACCGTCTTGTTTCTTTTATCGGGAA-TTCCAAACTGATATCCAAAAC-TTGTCCCCCACAAATCTGTCCACCG--TCAGTCACAACTGATGTTAGCAAAAAGC-CCAGAG-ACTGAAGCATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AAACAAGATGCATATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-AC-------CT-CACCCG-AATACAAAACT-AT-GAAGACAGATATG-AAAAATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-AA---TATTCCACAACA--CCTGCT-GCTGTCCCTGACT----GAGGGATTG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT-TTTC-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---TTACAGA-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TA-GAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACAC-AACGACA-C-CGGTCAggaatag
gi|5 : CAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGG-ACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGATATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTCTTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-CTTTTATCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAGTCACAACTGATGTTAGCAAAA-AG-CCAGAG-ACTG-AGCATCTGATTG-A-ACATGT-GTATG-CGATGTTA-AA-CAAGATGCAGATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAA-TACAAAACT-AT-GAAGACAGATATG-AA-AATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCTAA----TATTCCACAACAC-C-TGCT-GCTGTCCCTGACTGAGGGA-----TG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT--TTT-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---T-ACAAG-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGAT--T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TAGAAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACACAAACGACA-C-CGGTCAagc
gi|6 : ttTCGTGTCCCCAAGA-AAAGGTAAA-CTGTATCT-G----T-GCCCGCAACCTCC-TGTTTGCTG-ACCTGATT----GA-----TG-----AATAACATAGACGATGTGAAGTCAATT-ACGTA-GATGGTATTCACAGAA-TCCAAATC---G-TC--AATCAAGATCACAACGACAA-TA-GAA-TAGTACGAGTGTGTGAATATTGACG-TCCAC-ACCTG-TATTAC-CG----C-TT--AAT-TGCAATTGGCAG------ATGTTAGTTCG------TTGT-GTTTACA-ATATC--TGG-TG-AA--CGTCAGACCGGGTCTGTTTA-TCTG----ATTAT---A---AA--AATTTC-TCT---TGACAGAACACCAACAGGAGACACAATACACCGT--GTGAC---TATT-AACATC---A---TGG--TATA-----A-ATAAGCACATGTGAA-AGTTCTGGTGAACTGATTTAT--TAGATAG-GAACGTA-AGATTCAAA-CCAAAACTGGT---CTTCTAGAC-AGTAAAAC--AGTTTACCACA-CTGTTAGAAG--CTCCTACATCAagca
gi|7 : aaatcagt-TGTAAAACACGACAATGTTCTCAATGTCA-GGGGGATTCCGA-GTTCTAC-TGTCGCA-CG-T-GTC-AA-TATGACCTGTG-T-CTGCAG-T--GTAAAGAGA-TACACGTTA-T--T-GT-TC---TA-G--G-TT---CCCCACAAC-AT-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTC--AAAT-CCGT-GTTCAAACAAGAAACCTGTGCGAGGCATCCAGACATGGTCTATGAAATATTTTG-CCGGCCGTGC---AAT-GTTCCTG-TGTGTATGCAATG-CTCAGACCACAGT--GGACATAAAAC-GATGGA-TCTTAAAACAGTAT-AC-GAAGCACTCCGT-CAA--CAA-CATA-GAACAGTCATTC-ATAG-AAT---TAGGGATGAAAGTCTC-TATAACTGCCATATC-CTCCTGACAGGAA-T-CGAAACGGATTT--AAA-C-ACGTGTCATGCAAACATCTC-ACAGATTCAG--AAAAA-GATGTCAATAAAA-TC-TCGGAG-AATAAAGCTTCtatgaggcct
gi|8 : G--TGAGAG------ATATTAGT--T------ATGT-GGCC-CACATTTCCCTCG-TCT----CAACAGACGAGCTTTGGGTG-AGTG----ATTTTTTTG---CC--AGGCTTATCT---TAGCTGA-CAC-AACAGGTACCACTCTAAATCGC--CTGACAGATA-CGGACCCCAGAA---TTATCTAT----GGA-TTTCACACG-ACCAGTAGTGCGGGTGAGCTGTTTTAC-ATAGACAGTGCACTTA-ACA-TCGG--C--AAACT-CT---C-TACTGCC-GACAATGCCAAG-T--CCATA-CTAATAAAGAATGA---ACA--ACCATGGATACCA--AAT-TGTGTCGTG-TGCTCCCCCTCC-ACTG-GAGATC-TGCTGGTCG-GGATG------AA-GAAAGTTG-ATCATTCCCAAA------AACAGGCCAAAATAAAGAGATACAAAAGCACAGGCCGACAC-GTCC-AGA-CCGTGGA-A-AC-GAa
gi|9 : tCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGC----GGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTATAA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---TCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGAGATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTTCTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACCGGAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-Caccaagccggggatagaatatacagttt
Alignments
lowQualScore : 1 1 1 1 1 1 1 1 3333333 1 11 1 1 2222 1 1 11 1 1 222 77777777777777 1 11 1 111 111 11 111 222 2222 111 55555555555555555555555 5555555555555555555555555555 111111 4444444444444444444 222222 1111 111 1111111 111111111 1111 111111111 111 1111111 1111 33333 111 1111111 2222222222 1111 111111
lowQualScore : 5 5 1 5 5 5 5 5 1 5 1111111 5 88 5 22 5 4444 5 5 1 88 3 3 3 111 33333333333333 7 0 33 3 0 3 0 0 5 5 1 5 4 1 5 8 4 4 3 3 3 3 3 4 4 1 8 55 4 4 8888 4 777 4 6666 222 11 4 88 4 4 4 4 55 777 55 55 4 4 44 44 222 5 000 22 5 1 5 77 0 66 5 5 5 0 5 77 5 66 5 5 000 5 3 5 1 1 999 5 5 0 5 5 333 5 5 5 1 6 1 6 1 77 0000 1 6 6 6 666 6 888 6 33333333333333333333333 6 6 6 2 6 6 6 1 5 5 5 4444444444444444444444444444 77 4 1 666666 0000000000000000000 7 22 5 5 5 5 1 22 5 4 222222 99 6 99 6 3 6 3 6 6 6 5 5 2222 111 1 66 5555555 1 777777777 5 1 5 0 66 5 1 66 1 5 0000 444444444 888 1 888 1 0 5 5 1 1 77 000 8888888 44 3 4444 5 1 1 5 1 0 5 5 4 33333 5 000 5 5 77 5 1 5 6666666 44 77 5 5 3 77 5 5 5 1 4444444444 22 5 5 2222 666666 5 22 5 0 1 5 1 5 5 1 5 5 0 6 6 1 1
lowQualScore : . . . . . . . . . . ....... . .. . .. . .... . . . .. . . . ... .............. . . .. . . . . . . . . . . . . . . . . . . . . . . . . .. . . .... . ... . .... ... .. . .. . . . . .. ... .. .. . . .. .. ... . ... .. . . . .. . .. . . . . . .. . .. . . ... . . . . . ... . . . . . ... . . . . . . . . .. .... . . . . ... . ... . ....................... . . . . . . . . . . . ............................ .. . . ...... ................... . .. . . . . . .. . . ...... .. . .. . . . . . . . . . .... ... . .. ....... . ......... . . . . .. . . .. . . .... ......... ... . ... . . . . . . .. ... ....... .. . .... . . . . . . . . . ..... . ... . . .. . . . ....... .. .. . . . .. . . . . .......... .. . . .... ...... . .. . . . . . . . . . . . . . . .
lowQualScore : 5 5 0 5 5 0 5 5 0 0 0000000 0 55 5 00 5 0000 0 5 0 33 3 3 7 000 33333333333333 3 0 88 2 0 2 8 8 7 7 0 7 4 0 3 0 0 0 6 6 6 6 6 0 0 2 0 55 0 0 6666 0 000 0 9999 555 33 0 88 0 0 0 0 55 000 55 55 0 0 99 66 777 7 000 33 7 0 7 99 7 77 7 7 7 1 7 99 7 44 7 7 000 7 0 7 7 4 444 7 7 7 0 0 111 0 7 7 0 7 0 7 0 33 7777 0 7 7 7 777 7 333 7 00000000000000000000000 7 7 7 5 7 7 7 0 4 7 7 4444444444444444444444444444 11 3 4 666666 4444444444444444444 9 11 7 7 7 7 9 33 7 9 888888 22 7 22 7 7 7 5 7 7 7 7 7 1111 999 4 99 6666666 4 555555555 0 0 0 2 99 0 4 99 4 0 6666 888888888 999 4 888 4 4 0 0 4 7 99 111 0000000 44 0 4444 7 4 6 7 4 4 7 7 3 00000 7 000 7 7 99 7 7 7 1111111 77 99 7 7 0 44 7 7 7 4 1111111111 00 7 7 1111 444444 7 33 0 7 6 7 0 7 7 0 7 7 7 7 7 0 0
consensus : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCGTCAATCA-CAAC-GATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
Reference ( family-561 ) : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCGTCAATCA-CAACTGATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
gi|1 : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAATGTGTGTATCTGTCTGATA-CATAATTAGG-GTTGTGGTTTTTTTCAC--TTATACTTTGTACTGTTCTTGGTTT-TTTTCAAGCAGATTGTATTCCTAGAGACCCAGAA-TCTCCACATCATG-GACACA-TAGGACTCAGT-ACACAGTTATAAAGTACGACATTGTTCTCAATGTCAGGGGGGACACCGA-GTTCTAC-TGTCACA-CGTT-GTA-AACCATG-CCTGTGCT-TTACTGATGAGTAAGAAGAGGACAGGTCA-T--GAAA-TT---AA-C--ATTA---CCATCCACCAATG-ATGTTGTTATCT-ACC-GTT-G--AGAAAAA--GTTTAAAACT-ATAT-CCCC-GACAAG--TTCTGTGTCCGACATCCAGACAGGATCTATGAAATGTTCTGTTCAGTCGTGT---GAACTTTTCTGTCCTGTTTCCGATGTTTTAGATCACCAATTATGGACCAACTAACTGAA-CA-TAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CA-C-GAGAAATCATTATACAA-CACATACAGAACTGAGAATCTCGTATAACTGTTGTGTT--TCCT-GCAGGAATT-CCAAACTGATACCAAAA-CTTTGT-CCCCACAAATCTGTC-ACCGTCAATCA-CAGC--ATGGCAACAAAA-GCTCCAGAGAACTGAAGGATCTGATTGAACAC-TGTGGGATGTTGATACTACAA-CAA-ATACAGAAATTTATGTA-TTGCGTAGAAATACAAACAGCCAGAAGAGAAAATATTGAACCAGAC------C-GCCT-CACCCA-C-CACAAAACTGATAGAGGACAGATATGAAACAATCAGCACATACAAGAGTGCT-CA---TCTCTTGTTTATTAAAACCAGTCGTGTCCCCCAGATAAAGG-ACACCC---CCT-ATATCT-TTCAACAACA--C-TGCT-GC-GTCCTTGACT----GA-----GGATTCAAA---CATGGA-GATGTGA-GTCAGTTGAT-TGAGGGGGAAT-C-C-GAAATCCATAT----ATTC--AA-C-AGG--A-AACGACAAGTAGGAAATAG-ACGAGTGGTTGAA-ACTGACGATCCACAACCTGCTCTTA-ACAGAGTCGTCATAGTCTGCT--TGACAGTGTGTTGTATTACT--GGAGTTTACGTAGTTT----ATACC--TAGCTGTGAACCGTCAGACCGGGTCTGGGTATTCTGCCTCAAGAC---G---ACAAAATCTCACCTGCATGAC-GA-CAC-AACA-GAGACACTATACACCGTTAGTGACAACTA-G-A--ACC---AGGGTTATTAGCAGGAGGAGCTACAC-CA-GTCGACAGTTC-GGTGAACTGATTTATAATA-ACAGTAATGATACACA-TCAAT-CTAAAACT-GTTCAT-CATAGACAAATAAAAC--AT-TTACCACATTTGTTAGAGA--G--CTACATCCACATGGAGCCCATTCAG-TGTGT-TTACTG-TCCCCGTCCAACTA-GAGATC-TGA--ATCGCGGACGT-----TT-AAACAGTGCAT-A----CACT------GACAGG-CAAGAAATACC-GT-CAACAGTACAGGACAACATGGTAC-T-A-CTATACA-ATAC-AACAACA-CTCGGTCA
gi|10 : GGCAGGAA-T-CCAAACTGATATCCAAA-G-TTTGCCCTCACAAATCTGTC-ACCGTAAATCA-CA---GATGTCAACAAAA-GC-CCAGAG-AATGAAGGATCTGATTG-ACAC-TGTGGTATT-TGAGGTTA----CAAGATACTGAGGTTTAGTGA-TTGC-CAG-AATTC-AACAA-CAGAAGAGAAAA-A-TGAA-CAGACAACT--TGTTTTATATC-----TACAGAACT-AT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTTGTGTACCCCAGATAAA-G-AC-----------------------CAA--------TC-G-TGTCCCCCA------GG-----TA-----AA------GGGCAGTTCTA-GTCAGTT-AT-TG-AATGCCAT-CACA
gi|11 : TG-TCT--GTTTATTTTC-GGCAGATTGTATTCCTAAAGGCAGTGAT-CATCCACATCATG-GACATACTAAAATTCAGT-ACACAG-TATAAAGTACGGCAGTGTTCTCAATGTCA-GGGGGACACCGA-GTTCTAC-T-TCCCACCG-T-GTA-AA-CAT-ATCTATG-T-TTACGG-T--GTAAA
gi|12 : acacttCAG-TGTAAAGTACGACATTGTT-TCAATGTCACAGGGGACACCGAAGTTCTACCTGTCACA-CG-T-GTA-AA-C-TG-CCTATG-TCTTACTG-T--GTA--GAAA-GGCATGCCAGTCAA-GA-TC---TA-TCAA-TAAC-CCAAACACC-ATGA---TCGTGATTTTACC-G-T-G--AG---AA--GTTT--AAAT-GTAT-CCCTTTACGAGAAAACTGTGTCAGACATCCAAACacgaagattattaacagaaaaaaccacaaatatcaccatgttaggttttgtttaac
gi|13 : cagCCTTGGCAACCA--TGGATGT-T-G-ACTGA--CCCGTC--GCTGCGAGATTATGATGGTCG-GGATG------TT-ATATACTG-AT-A----CAGA------GACAGG-CA-GATTAAACGGTACAACAGTACAGGACAACAC-GTGCTTGATCTATACATGCAC-GACAACATC-TGGTCACAAACTCTA
gi|14 : CACA-CG-TTGTA-AA-C-TGATTTGTG-T-TTACAT-C--GTAAAGA-A-GACAT-----T--G--A-TCAAATA-T----TA---CCATACACC-ATGGATGTTGT-ATGT-ATT-G-T-GTGAG---AT--GTTT--AACT-ACAT-TCCCCGACAAG--ATATGTGTCAGACATCCGAACagttat
gi|15 : C-ACCTG-TATTACACA----CGTC--CGTCTGTG--TGCCAA------ATGTTAAT--T------CTGT-GTAT-CACATATA--TGG-TGTTA--TGTCAGACCGAGTCTGGGTA-TCTG----GTAGA---C---AC--AGTCTCATCT---TGACAGA-CAC-AACAGtagagatgattt
gi|16 : AAAGAGA-TAC----C--T--T-GA-TC---AAAC--A-TA---CCATACGCC-ATGA----TGTGATGT-ATT-G-T-G--AG---AT--GTTT--AACT-ACGT-TCCCAGACAAGAAA--TGTGTCAAACATCCAAAC
gi|17 : AATGTCA-GGGGGACACCAA-GTTCTAC-TGTCTCA-CG-T-GTA-AA-CATGAtag
gi|18 : CACAAATCTATC-ATCATCGATTA-CA---GATGTCAACAAAA-
gi|2 : CTGT-TTGGGA-GCATAATGTTTCATAAAGT-CGTCCTCTTCATTTTTACAGTATCAAGAAT-CAC------AGTGC-TTTA--GGTAGAAAAATTCCACAGTT-TTGATC----ATGTTTATCATTTTCTTGTCATCC-TTTATTTCCTTTTCCTAC-ATTGATTACTAATATGTGTA--TGT-TAATAACATTATTATG--ATGTG----------CCATT-TACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACAGCATG-GACACACTAGGACTCAGT-ACACAG-TATAAAGTACGACATTGTTCTCAATGCCA-GGGGGACACCGA-ATTCTAC-TGTCACA-CG-T-GTA-AA-CATGACATGTG-T-TTACTC-T--GCAAAGAGA-GGCATGTCA-T--G-GA-TC---TA-C--A-TA---CAATCCACC-ATGAATGTTATGA-TT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCCGACAAGAAATTTGTGCCCGACATCCAGACAGGATCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTG-TCTGTTTCCGATG-TTTAGAGCACCGA--AAACACCAAAT-ATTGGA-CATTAGAACAGCCT-AT-CAA--AAAGCGA-CAA--CAA-CACC-GCGAAATCATTG-ACAA-CAT---CAGAAGTCAGACTATC-TATAACTGTCGTGTT-CTCCTGGCAGGAA-------------ATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCGTCAATCA-CA---GATGTCAACAAAA-GC-CCAGAG-ACTGAAGGATCTGATTG-ACAC-TGTGGTATG-TGATGTT---A-C-AGATACAGAGGTTTATTGATTTGC-TAG-AATAC-AACAA-CAAAAGAGAAAA-C-TGAA-CAAACAACTTGT-TCTT-CATC---A--ACAGAACT-CT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCAGTCGTGTCCCCCAGAAAAAG----A-CC---C-------------------------GCC-G-TGTCCCCCA------GA-----TA-----AA------GGACAGTCCTA-GTCAGTT-AT-TA-AATGCAAT-CACAGAAATCCAACT----G-TC--AA-CAGGA--A-AACGGCAAGTA-GAATTAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTA-TATTACACG----TGTC--TGTCTGTG--TGACAG------ATGTTCGT--G------AAGT-GTAT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGATA-TCTG----ATGGT---G---AC--AATCTCATCT---TGGCAGA-CAC-AACAGGAGACACTATACACCGT--GTGACAGATA-C-AACTCC---A---TTGTATATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGATTACA-ACA-TCAAT----AAACT-GT---C-TATAGAC-AATAAAAC--AG-TCACCACA-CTGTTAGAGA--GGCTTACATCACCATGGTTACCA--CGG-AGTGT-GTACTGTTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------CA-TAACACTG-AT-A----CAAA------GACAGG-CAAGATATCCCGGTACAACAGTACAGGACAACAG-GTAC-TGA-CTATACA-GCAC-GACAACA-C-CGGGCACACACTGTA
gi|3 : AGTATATGCA--TGT-TAATA-CAAAATGACGAGGTGT-----------C--TTATACTTTAAAATT-TCT--GTTTATTTTC-AGCAGA---------------CCCAG-T-CCTCCACATCATG-GACACACTAGGACGCCTT-ACTCAA-TATAAAGTACGGGAGTGTTGTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGCCACA-CG-T-GTA-AA-TATGATCTGTG-T-TTCCAG-T--GTAAAGAGA-TACATGTCA-T--T-GA-TC---TA-C--A-TA---CCAAAGACC-AC-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAGATCTGTGTCCAACATCCGGAGAGGGTCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTT-TCTGTTTCCAATG-TTTAGAGCACCAA--AAACACCAAAT-AATGGA-CATTAGAACAGCCT-AT-CAAAGAAAGCGG-CAA--CAA-CACC-GGGAAATCATTA-ACAG-CAT---CAGAAGTGAGACTCTC-TATAACTGTCGTGTT-CTCCTGGCAAGAA-T-CCAAACTTATATTCAAA-C-TTGTCCGCCGCAAATATGGC-ACCGTTCATCA-CAACTGATGCCAACAAAA-GC-CCAGAT-ATTGAAGAATCTGATTG-ATAC-TGTAGTATG-TGATACTAGAG-CAAGATGCAGAGGTTTATTGA-TTGC-AAA-AATAC-AACAA-CAAAAGAGAAAA-A-TGAA-GAGAC-ACC--T-CACT-AAC----A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTTTTGTTTATGAAGACCTATCGTATCCCCCAGAAAAAGG-CCA-CC---CCTGA----TCTTCCACAACA--CATGCT-GCTGTCCCTGACT----GAGAGATTC-----AC---CATGGAGGATGTTA-GTCAGTT-AT-TG-AGTGTCAT-CACAGAAATCCAAATCCAAA-TCTTAA-CAGTA--A-AACGGCAAGTA-GCGATAG-ACGAGTGTGTGAA-ACTGACG-CCCAC-ACCTG-TATTACACG----CGTC--CGTCGGTG--TGATAG------GAGTTAGT--G------AAGT-GTGT-CACATATC--TCG-TGTGA--CGTCAGACCGGATCTGGGTA-TCTG----GTGGT---GATTAC--AATATTATCT---TGACAGA-CAC-AACAGGAGACACTATAGACTGT--GTGGCAGATA-T-AATACC---------------AAAAGGA-CCACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGGAAACATA-ACA-TCAA--C--AAACT-GT---C-GGTAGAC-AATAAAAT--AG-TCACCACC-CTGTTTGAGA--GATCTACATCACCATGGAAACCA--TGG-GGGGT-GTATTGCTCCCCATTC-ACAG-GAGATC-TGTTTGTCG-GGATGTATAAATA-TAACCCTG-AT-A----CAGAAACATGGACAGG-CAAGATAAACCGGTACAACAGTACAGGTCAACAC-ATAC-TGA-CCATACA-TCAC-AACACCA-C-AGGTAAAATAC
gi|4 : AGACACTTCCACATCATGAGACACACAGGGACTCAGTTACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-T-ACTGGT--GAAAAGAGA-GACATGTCA-T--G-GAATC---TA-C--A-TAATACCAAGCACC-ATGAAGGTTGTGATTT-ACCCG-TTG--AA---AGTGGTCT--AGTTTACATTCCCCATACAG--AATCTGT-TTAGACACCCAGACAGGATCAATTTTATGTTCTG-TCAGTCGTGTTCAGAA--TTTCTG-CCTGTG-CCGATG-GTTAGAGCACCGA--AAACACCAACT-TCTGAAACATTAGAACAGCCTTATTCAAACAAAGCGAGCAAACCAAACAC--GAGAAATTATTG-ACAAACAT---CAGAAGTGAAACTCTA-TA-AACCGTCTTGTTTCTTTTATCGGGAA-TTCCAAACTGATATCCAAAAC-TTGTCCCCCACAAATCTGTCCACCGTCAGTCA-CAACTGATGTTAGCAAAAAGC-CCAGAG-ACTGAAGCATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AAACAAGATGCATATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-AC-------CT-CACCCG-AATACAAAACT-AT-GAAGACAGATATG-AAAAATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-AA---TATTCCACAACA--CCTGCT-GCTGTCCCTGACT----GAGGGATTG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT-TTTC-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---TTACAGA-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GACC---ATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TA-GAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGTACAACA-------------C-ATTT-TGA-CAATGCA-ACAC-AACGACA-C-CGGTCAggaatag
gi|5 : CAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGG-ACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGATATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTCTTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-CTTTTATCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCGTCAGTCA-CAACTGATGTTAGCAAAA-AG-CCAGAG-ACTG-AGCATCTGATTG-A-ACATGT-GTATG-CGATGTTA-AA-CAAGATGCAGATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAA-TACAAAACT-AT-GAAGACAGATATG-AA-AATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCTAA----TATTCCACAACAC-C-TGCT-GCTGTCCCTGACTGAGGGA-----TG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT--TTT-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---T-ACAAG-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGAT--T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TAGAAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACACAAACGACA-C-CGGTCAagc
gi|6 : ttTCGTGTCCCCAAGA-AAAGGTAAA-CTGTATCT-G----T-GCCCGCAACCTCC-TGTTTGCTG-ACCTGATT----GA-----TG-----AATAACATAGACGATGTGAAGTCAATT-ACGTA-GATGGTATTCACAGAA-TCCAAATC---G-TC--AATCAAGATCACAACGACAA-TA-GAA-TAGTACGAGTGTGTGAATATTGACG-TCCAC-ACCTG-TATTAC-CG----C-TT--AAT-TGCAATTGGCAG------ATGTTAGTTCG------TTGT-GTTTACA-ATATC--TGG-TG-AA--CGTCAGACCGGGTCTGTTTA-TCTG----ATTAT---A---AA--AATTTC-TCT---TGACAGAACACCAACAGGAGACACAATACACCGT--GTGAC---TATT-AACATC---A---TGG--TATA-----A-ATAAGCACATGTGAA-AGTTCTGGTGAACTGATTTAT--TAGATAG-GAACGTA-AGATTCAAA-CCAAAACTGGT---CTTCTAGAC-AGTAAAAC--AGTTTACCACA-CTGTTAGAAG--CTCCTACATCAagca
gi|7 : aaatcagt-TGTAAAACACGACAATGTTCTCAATGTCA-GGGGGATTCCGA-GTTCTAC-TGTCGCA-CG-T-GTC-AA-TATGACCTGTG-T-CTGCAG-T--GTAAAGAGA-TACACGTTA-T--T-GT-TC---TA-G--G-TT---CCCCACAAC-AT-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTC--AAAT-CCGT-GTTCAAACAAGAAACCTGTGCGAGGCATCCAGACATGGTCTATGAAATATTTTG-CCGGCCGTGC---AAT-GTTCCTG-TGTGTATGCAATG-CTCAGACCACAGT--GGACATAAAAC-GATGGA-TCTTAAAACAGTAT-AC-GAAGCACTCCGT-CAA--CAA-CATA-GAACAGTCATTC-ATAG-AAT---TAGGGATGAAAGTCTC-TATAACTGCCATATC-CTCCTGACAGGAA-T-CGAAACGGATTT--AAA-C-ACGTGTCATGCAAACATCTC-ACAG--ATTCAGAAAAAGATGTCAATAAAA-TC-TCGGAG-AATAAAGCTTCtatgaggcct
gi|8 : G--TGAGAG------ATATTAGT--T------ATGT-GGCC-CACATTTCCCTCG-TCT----CAACAGACGAGCTTTGGGTG-AGTG----ATTTTTTTG---CC--AGGCTTATCT---TAGCTGA-CAC-AACAGGTACCACTCTAAATCGC--CTGACAGATA-CGGACCCCAGAA---TTATCTAT----GGA-TTTCACACG-ACCAGTAGTGCGGGTGAGCTGTTTTAC-ATAGACAGTGCACTTA-ACA-TCGG--C--AAACT-CT---C-TACTGCC-GACAATGCCAAG-T--CCATA-CTAATAAAGAATGA---ACA--ACCATGGATACCA--AAT-TGTGTCGTG-TGCTCCCCCTCC-ACTG-GAGATC-TGCTGGTCG-GGATG------AA-GAAAGTTG-ATCATTCCCAAA------AACAGGCCAAAATAAAGAGATACAAAAGCACAGGCCGACAC-GTCC-AGA-CCGTGGA-A-AC-GAa
gi|9 : tCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGC----GGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTATAA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---TCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGAGATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTTCTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACCGGAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-Caccaagccggggatagaatatacagttt
Alignments
lowQualScore : 1 1 1 1 1 1 1 1 3333333 1 11 1 1 2222 1 1 11 1 1 222 77777777777777 1 11 1 111 111 11 111 222 2222 111 55555555555555555555555 5555555555555555555555555555 111111 4444444444444444444 222222 1111 111 1111111 111111111 1111 111111111 111 1111111 1111 33333 111 1111111 2222222222 1111 111111 1
lowQualScore : 5 5 1 5 5 5 5 5 1 5 1111111 5 88 5 22 5 4444 5 5 1 88 3 3 3 111 33333333333333 7 0 33 3 0 3 0 0 5 5 1 5 4 1 5 8 4 4 3 3 3 3 3 4 4 1 8 55 4 4 8888 4 777 4 6666 222 11 4 88 4 4 4 4 55 777 55 55 4 4 44 44 222 5 000 22 5 1 5 77 0 66 5 5 5 0 5 77 5 66 5 5 000 5 3 5 1 1 999 5 5 0 5 66 888 5 5 5 1 6 1 6 1 77 0000 1 6 6 6 666 6 888 6 33333333333333333333333 6 6 6 2 6 6 6 1 5 5 5 4444444444444444444444444444 77 4 1 666666 0000000000000000000 7 22 5 5 5 5 1 22 5 4 222222 99 6 99 6 3 6 3 6 6 6 5 5 2222 111 1 66 5555555 1 777777777 5 1 5 0 66 5 1 66 1 5 0000 444444444 888 1 888 1 0 5 5 1 1 77 000 8888888 44 3 4444 5 1 1 5 1 0 5 5 4 33333 5 000 5 5 77 5 1 5 9999999 44 77 5 5 3 77 5 5 5 1 4444444444 22 5 5 2222 666666 5 22 2 0 5 1 5 5 1 5 5 0 6 6 1 1
lowQualScore : . . . . . . . . . . ....... . .. . .. . .... . . . .. . . . ... .............. . . .. . . . . . . . . . . . . . . . . . . . . . . . . .. . . .... . ... . .... ... .. . .. . . . . .. ... .. .. . . .. .. ... . ... .. . . . .. . .. . . . . . .. . .. . . ... . . . . . ... . . . . .. ... . . . . . . . . .. .... . . . . ... . ... . ....................... . . . . . . . . . . . ............................ .. . . ...... ................... . .. . . . . . .. . . ...... .. . .. . . . . . . . . . .... ... . .. ....... . ......... . . . . .. . . .. . . .... ......... ... . ... . . . . . . .. ... ....... .. . .... . . . . . . . . . ..... . ... . . .. . . . ....... .. .. . . . .. . . . . .......... .. . . .... ...... . .. . . . . . . . . . . . . . .
lowQualScore : 5 5 0 5 5 0 5 5 0 0 0000000 0 55 5 00 5 0000 0 5 0 33 3 3 7 000 33333333333333 3 0 88 2 0 2 8 8 7 7 0 7 4 0 3 0 0 0 6 6 6 6 6 0 0 2 0 55 0 0 6666 0 000 0 9999 555 33 0 88 0 0 0 0 55 000 55 55 0 0 99 66 777 7 000 33 7 0 7 99 7 77 7 7 7 1 7 99 7 44 7 7 000 7 0 7 7 4 444 7 7 7 0 99 888 0 7 7 0 7 0 7 0 33 7777 0 7 7 7 777 7 333 7 00000000000000000000000 7 7 7 5 7 7 7 0 4 7 7 4444444444444444444444444444 11 3 4 666666 4444444444444444444 9 11 7 7 7 7 9 33 7 9 888888 22 7 22 7 7 7 5 7 7 7 7 7 1111 999 4 99 6666666 4 555555555 0 0 0 2 99 0 4 99 4 0 6666 888888888 999 4 888 4 4 0 0 4 7 99 111 0000000 44 0 4444 7 4 6 7 4 4 7 7 3 00000 7 000 7 7 99 7 7 7 7777777 77 99 7 7 0 44 7 7 7 4 1111111111 00 7 7 1111 444444 7 33 0 7 7 0 7 7 0 7 7 7 7 7 0 0
consensus : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAACTGATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
Reference ( family-561 ) : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAAC-GATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
gi|1 : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAATGTGTGTATCTGTCTGATA-CATAATTAGG-GTTGTGGTTTTTTTCAC--TTATACTTTGTACTGTTCTTGGTTT-TTTTCAAGCAGATTGTATTCCTAGAGACCCAGAA-TCTCCACATCATG-GACACA-TAGGACTCAGT-ACACAGTTATAAAGTACGACATTGTTCTCAATGTCAGGGGGGACACCGA-GTTCTAC-TGTCACA-CGTT-GTA-AACCATG-CCTGTGCT-TTACTGATGAGTAAGAAGAGGACAGGTCA-T--GAAA-TT---AA-C--ATTA---CCATCCACCAATG-ATGTTGTTATCT-ACC-GTT-G--AGAAAAA--GTTTAAAACT-ATAT-CCCC-GACAAG--TTCTGTGTCCGACATCCAGACAGGATCTATGAAATGTTCTGTTCAGTCGTGT---GAACTTTTCTGTCCTGTTTCCGATGTTTTAGATCACCAATTATGGACCAACTAACTGAA-CA-TAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CA-C-GAGAAATCATTATACAA-CACATACAGAACTGAGAATCTCGTATAACTGTTGTGTT--TCCT-GCAGGAATT-CCAAACTGATACCAAAA-CTTTGT-CCCCACAAATCTGTC-ACCG--TCAATCACAGC--ATGGCAACAAAA-GCTCCAGAGAACTGAAGGATCTGATTGAACAC-TGTGGGATGTTGATACTACAA-CAA-ATACAGAAATTTATGTA-TTGCGTAGAAATACAAACAGCCAGAAGAGAAAATATTGAACCAGAC------C-GCCT-CACCCA-C-CACAAAACTGATAGAGGACAGATATGAAACAATCAGCACATACAAGAGTGCT-CA---TCTCTTGTTTATTAAAACCAGTCGTGTCCCCCAGATAAAGG-ACACCC---CCT-ATATCT-TTCAACAACA--C-TGCT-GC-GTCCTTGACT----GA-----GGATTCAAA---CATGGA-GATGTGA-GTCAGTTGAT-TGAGGGGGAAT-C-C-GAAATCCATAT----ATTC--AA-C-AGG--A-AACGACAAGTAGGAAATAG-ACGAGTGGTTGAA-ACTGACGATCCACAACCTGCTCTTA-ACAGAGTCGTCATAGTCTGCT--TGACAGTGTGTTGTATTACT--GGAGTTTACGTAGTTT----ATACC--TAGCTGTGAACCGTCAGACCGGGTCTGGGTATTCTGCCTCAAGAC---G---ACAAAATCTCACCTGCATGAC-GA-CAC-AACA-GAGACACTATACACCGTTAGTGACAACTA-G-A--ACC---AGGGTTATTAGCAGGAGGAGCTACAC-CA-GTCGACAGTTC-GGTGAACTGATTTATAATA-ACAGTAATGATACACA-TCAAT-CTAAAACT-GTTCAT-CATAGACAAATAAAAC--AT-TTACCACATTTGTTAGAGA--G--CTACATCCACATGGAGCCCATTCAG-TGTGT-TTACTG-TCCCCGTCCAACTA-GAGATC-TGA--ATCGCGGACGT-----TT-AAACAGTGCAT-A----CACT------GACAGG-CAAGAAATACC-GT-CAACAGTACAGGACAACATGGTAC-T-A-CTATACA-ATAC-AACAACA-CTCGGTCA
gi|10 : GGCAGGAA-T-CCAAACTGATATCCAAA-G-TTTGCCCTCACAAATCTGTC-ACCG--TAAATCACA---GATGTCAACAAAA-GC-CCAGAG-AATGAAGGATCTGATTG-ACAC-TGTGGTATT-TGAGGTTA----CAAGATACTGAGGTTTAGTGA-TTGC-CAG-AATTC-AACAA-CAGAAGAGAAAA-A-TGAA-CAGACAACT--TGTTTTATATC-----TACAGAACT-AT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTTGTGTACCCCAGATAAA-G-AC-----------------------CAA--------TC-G-TGTCCCCCA------GG-----TA-----AA------GGGCAGTTCTA-GTCAGTT-AT-TG-AATGCCAT-CACA
gi|11 : TG-TCT--GTTTATTTTC-GGCAGATTGTATTCCTAAAGGCAGTGAT-CATCCACATCATG-GACATACTAAAATTCAGT-ACACAG-TATAAAGTACGGCAGTGTTCTCAATGTCA-GGGGGACACCGA-GTTCTAC-T-TCCCACCG-T-GTA-AA-CAT-ATCTATG-T-TTACGG-T--GTAAA
gi|12 : acacttCAG-TGTAAAGTACGACATTGTT-TCAATGTCACAGGGGACACCGAAGTTCTACCTGTCACA-CG-T-GTA-AA-C-TG-CCTATG-TCTTACTG-T--GTA--GAAA-GGCATGCCAGTCAA-GA-TC---TA-TCAA-TAAC-CCAAACACC-ATGA---TCGTGATTTTACC-G-T-G--AG---AA--GTTT--AAAT-GTAT-CCCTTTACGAGAAAACTGTGTCAGACATCCAAACacgaagattattaacagaaaaaaccacaaatatcaccatgttaggttttgtttaac
gi|13 : cagCCTTGGCAACCA--TGGATGT-T-G-ACTGA--CCCGTC--GCTGCGAGATTATGATGGTCG-GGATG------TT-ATATACTG-AT-A----CAGA------GACAGG-CA-GATTAAACGGTACAACAGTACAGGACAACAC-GTGCTTGATCTATACATGCAC-GACAACATC-TGGTCACAAACTCTA
gi|14 : CACA-CG-TTGTA-AA-C-TGATTTGTG-T-TTACAT-C--GTAAAGA-A-GACAT-----T--G--A-TCAAATA-T----TA---CCATACACC-ATGGATGTTGT-ATGT-ATT-G-T-GTGAG---AT--GTTT--AACT-ACAT-TCCCCGACAAG--ATATGTGTCAGACATCCGAACagttat
gi|15 : C-ACCTG-TATTACACA----CGTC--CGTCTGTG--TGCCAA------ATGTTAAT--T------CTGT-GTAT-CACATATA--TGG-TGTTA--TGTCAGACCGAGTCTGGGTA-TCTG----GTAGA---C---AC--AGTCTCATCT---TGACAGA-CAC-AACAGtagagatgattt
gi|16 : AAAGAGA-TAC----C--T--T-GA-TC---AAAC--A-TA---CCATACGCC-ATGA----TGTGATGT-ATT-G-T-G--AG---AT--GTTT--AACT-ACGT-TCCCAGACAAGAAA--TGTGTCAAACATCCAAAC
gi|17 : AATGTCA-GGGGGACACCAA-GTTCTAC-TGTCTCA-CG-T-GTA-AA-CATGAtag
gi|18 : CACAAATCTATC-ATCA--TCGATTACA---GATGTCAACAAAA-
gi|2 : CTGT-TTGGGA-GCATAATGTTTCATAAAGT-CGTCCTCTTCATTTTTACAGTATCAAGAAT-CAC------AGTGC-TTTA--GGTAGAAAAATTCCACAGTT-TTGATC----ATGTTTATCATTTTCTTGTCATCC-TTTATTTCCTTTTCCTAC-ATTGATTACTAATATGTGTA--TGT-TAATAACATTATTATG--ATGTG----------CCATT-TACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACAGCATG-GACACACTAGGACTCAGT-ACACAG-TATAAAGTACGACATTGTTCTCAATGCCA-GGGGGACACCGA-ATTCTAC-TGTCACA-CG-T-GTA-AA-CATGACATGTG-T-TTACTC-T--GCAAAGAGA-GGCATGTCA-T--G-GA-TC---TA-C--A-TA---CAATCCACC-ATGAATGTTATGA-TT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCCGACAAGAAATTTGTGCCCGACATCCAGACAGGATCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTG-TCTGTTTCCGATG-TTTAGAGCACCGA--AAACACCAAAT-ATTGGA-CATTAGAACAGCCT-AT-CAA--AAAGCGA-CAA--CAA-CACC-GCGAAATCATTG-ACAA-CAT---CAGAAGTCAGACTATC-TATAACTGTCGTGTT-CTCCTGGCAGGAA-------------ATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACA---GATGTCAACAAAA-GC-CCAGAG-ACTGAAGGATCTGATTG-ACAC-TGTGGTATG-TGATGTT---A-C-AGATACAGAGGTTTATTGATTTGC-TAG-AATAC-AACAA-CAAAAGAGAAAA-C-TGAA-CAAACAACTTGT-TCTT-CATC---A--ACAGAACT-CT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCAGTCGTGTCCCCCAGAAAAAG----A-CC---C-------------------------GCC-G-TGTCCCCCA------GA-----TA-----AA------GGACAGTCCTA-GTCAGTT-AT-TA-AATGCAAT-CACAGAAATCCAACT----G-TC--AA-CAGGA--A-AACGGCAAGTA-GAATTAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTA-TATTACACG----TGTC--TGTCTGTG--TGACAG------ATGTTCGT--G------AAGT-GTAT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGATA-TCTG----ATGGT---G---AC--AATCTCATCT---TGGCAGA-CAC-AACAGGAGACACTATACACCGT--GTGACAGATA-C-AACTCC---A---TTGTATATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGATTACA-ACA-TCAAT----AAACT-GT---C-TATAGAC-AATAAAAC--AG-TCACCACA-CTGTTAGAGA--GGCTTACATCACCATGGTTACCA--CGG-AGTGT-GTACTGTTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------CA-TAACACTG-AT-A----CAAA------GACAGG-CAAGATATCCCGGTACAACAGTACAGGACAACAG-GTAC-TGA-CTATACA-GCAC-GACAACA-C-CGGGCACACACTGTA
gi|3 : AGTATATGCA--TGT-TAATA-CAAAATGACGAGGTGT-----------C--TTATACTTTAAAATT-TCT--GTTTATTTTC-AGCAGA---------------CCCAG-T-CCTCCACATCATG-GACACACTAGGACGCCTT-ACTCAA-TATAAAGTACGGGAGTGTTGTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGCCACA-CG-T-GTA-AA-TATGATCTGTG-T-TTCCAG-T--GTAAAGAGA-TACATGTCA-T--T-GA-TC---TA-C--A-TA---CCAAAGACC-AC-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAGATCTGTGTCCAACATCCGGAGAGGGTCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTT-TCTGTTTCCAATG-TTTAGAGCACCAA--AAACACCAAAT-AATGGA-CATTAGAACAGCCT-AT-CAAAGAAAGCGG-CAA--CAA-CACC-GGGAAATCATTA-ACAG-CAT---CAGAAGTGAGACTCTC-TATAACTGTCGTGTT-CTCCTGGCAAGAA-T-CCAAACTTATATTCAAA-C-TTGTCCGCCGCAAATATGGC-ACCG--TTCATCACAACTGATGCCAACAAAA-GC-CCAGAT-ATTGAAGAATCTGATTG-ATAC-TGTAGTATG-TGATACTAGAG-CAAGATGCAGAGGTTTATTGA-TTGC-AAA-AATAC-AACAA-CAAAAGAGAAAA-A-TGAA-GAGAC-ACC--T-CACT-AAC----A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTTTTGTTTATGAAGACCTATCGTATCCCCCAGAAAAAGG-CCA-CC---CCTGA----TCTTCCACAACA--CATGCT-GCTGTCCCTGACT----GAGAGATTC-----AC---CATGGAGGATGTTA-GTCAGTT-AT-TG-AGTGTCAT-CACAGAAATCCAAATCCAAA-TCTTAA-CAGTA--A-AACGGCAAGTA-GCGATAG-ACGAGTGTGTGAA-ACTGACG-CCCAC-ACCTG-TATTACACG----CGTC--CGTCGGTG--TGATAG------GAGTTAGT--G------AAGT-GTGT-CACATATC--TCG-TGTGA--CGTCAGACCGGATCTGGGTA-TCTG----GTGGT---GATTAC--AATATTATCT---TGACAGA-CAC-AACAGGAGACACTATAGACTGT--GTGGCAGATA-T-AATACC---------------AAAAGGA-CCACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGGAAACATA-ACA-TCAA--C--AAACT-GT---C-GGTAGAC-AATAAAAT--AG-TCACCACC-CTGTTTGAGA--GATCTACATCACCATGGAAACCA--TGG-GGGGT-GTATTGCTCCCCATTC-ACAG-GAGATC-TGTTTGTCG-GGATGTATAAATA-TAACCCTG-AT-A----CAGAAACATGGACAGG-CAAGATAAACCGGTACAACAGTACAGGTCAACAC-ATAC-TGA-CCATACA-TCAC-AACACCA-C-AGGTAAAATAC
gi|4 : AGACACTTCCACATCATGAGACACACAGGGACTCAGTTACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-T-ACTGGT--GAAAAGAGA-GACATGTCA-T--G-GAATC---TA-C--A-TAATACCAAGCACC-ATGAAGGTTGTGATTT-ACCCG-TTG--AA---AGTGGTCT--AGTTTACATTCCCCATACAG--AATCTGT-TTAGACACCCAGACAGGATCAATTTTATGTTCTG-TCAGTCGTGTTCAGAA--TTTCTG-CCTGTG-CCGATG-GTTAGAGCACCGA--AAACACCAACT-TCTGAAACATTAGAACAGCCTTATTCAAACAAAGCGAGCAAACCAAACAC--GAGAAATTATTG-ACAAACAT---CAGAAGTGAAACTCTA-TA-AACCGTCTTGTTTCTTTTATCGGGAA-TTCCAAACTGATATCCAAAAC-TTGTCCCCCACAAATCTGTCCACCG--TCAGTCACAACTGATGTTAGCAAAAAGC-CCAGAG-ACTGAAGCATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AAACAAGATGCATATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-AC-------CT-CACCCG-AATACAAAACT-AT-GAAGACAGATATG-AAAAATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-AA---TATTCCACAACA--CCTGCT-GCTGTCCCTGACT----GAGGGATTG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT-TTTC-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---TTACAGA-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TA-GAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACAC-AACGACA-C-CGGTCAggaatag
gi|5 : CAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGG-ACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGATATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTCTTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-CTTTTATCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAGTCACAACTGATGTTAGCAAAA-AG-CCAGAG-ACTG-AGCATCTGATTG-A-ACATGT-GTATG-CGATGTTA-AA-CAAGATGCAGATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAA-TACAAAACT-AT-GAAGACAGATATG-AA-AATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCTAA----TATTCCACAACAC-C-TGCT-GCTGTCCCTGACTGAGGGA-----TG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC--TCTCTGTG--TGACAG------TTATGATT--G------ATGT--TTT-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---T-ACAAG-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGAT--T-AACACC---A---TTGTCTATAGGAA----TACACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--GAC---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TAGAAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACACAAACGACA-C-CGGTCAagc
gi|6 : ttTCGTGTCCCCAAGA-AAAGGTAAA-CTGTATCT-G----T-GCCCGCAACCTCC-TGTTTGCTG-ACCTGATT----GA-----TG-----AATAACATAGACGATGTGAAGTCAATT-ACGTA-GATGGTATTCACAGAA-TCCAAATC---G-TC--AATCAAGATCACAACGACAA-TA-GAA-TAGTACGAGTGTGTGAATATTGACG-TCCAC-ACCTG-TATTAC-CG----C-TT--AAT-TGCAATTGGCAG------ATGTTAGTTCG------TTGT-GTTTACA-ATATC--TGG-TG-AA--CGTCAGACCGGGTCTGTTTA-TCTG----ATTAT---A---AA--AATTTC-TCT---TGACAGAACACCAACAGGAGACACAATACACCGT--GTGAC---TATT-AACATC---A---TGG--TATA-----A-ATAAGCACATGTGAA-AGTTCTGGTGAACTGATTTAT--TAGATAG-GAACGTA-AGATTCAAA-CCAAAACTGGT---CTTCTAGAC-AGTAAAAC--AGTTTACCACA-CTGTTAGAAG--CTCCTACATCAagca
gi|7 : aaatcagt-TGTAAAACACGACAATGTTCTCAATGTCA-GGGGGATTCCGA-GTTCTAC-TGTCGCA-CG-T-GTC-AA-TATGACCTGTG-T-CTGCAG-T--GTAAAGAGA-TACACGTTA-T--T-GT-TC---TA-G--G-TT---CCCCACAAC-AT-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTC--AAAT-CCGT-GTTCAAACAAGAAACCTGTGCGAGGCATCCAGACATGGTCTATGAAATATTTTG-CCGGCCGTGC---AAT-GTTCCTG-TGTGTATGCAATG-CTCAGACCACAGT--GGACATAAAAC-GATGGA-TCTTAAAACAGTAT-AC-GAAGCACTCCGT-CAA--CAA-CATA-GAACAGTCATTC-ATAG-AAT---TAGGGATGAAAGTCTC-TATAACTGCCATATC-CTCCTGACAGGAA-T-CGAAACGGATTT--AAA-C-ACGTGTCATGCAAACATCTC-ACAGATTCAG--AAAAA-GATGTCAATAAAA-TC-TCGGAG-AATAAAGCTTCtatgaggcct
gi|8 : G--TGAGAG------ATATTAGT--T------ATGT-GGCC-CACATTTCCCTCG-TCT----CAACAGACGAGCTTTGGGTG-AGTG----ATTTTTTTG---CC--AGGCTTATCT---TAGCTGA-CAC-AACAGGTACCACTCTAAATCGC--CTGACAGATA-CGGACCCCAGAA---TTATCTAT----GGA-TTTCACACG-ACCAGTAGTGCGGGTGAGCTGTTTTAC-ATAGACAGTGCACTTA-ACA-TCGG--C--AAACT-CT---C-TACTGCC-GACAATGCCAAG-T--CCATA-CTAATAAAGAATGA---ACA--ACCATGGATACCA--AAT-TGTGTCGTG-TGCTCCCCCTCC-ACTG-GAGATC-TGCTGGTCG-GGATG------AA-GAAAGTTG-ATCATTCCCAAA------AACAGGCCAAAATAAAGAGATACAAAAGCACAGGCCGACAC-GTCC-AGA-CCGTGGA-A-AC-GAa
gi|9 : tCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGC----GGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTATAA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---TCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGAGATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTTCTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACCGGAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-Caccaagccggggatagaatatacagttt
blockSeqs : . . T A . C T A A . C . . T CC . . . . C . . A T AGG GCCA A . . A . T A A T T . G C C A C C . T T . . C G G . . G CAA A AAA A CAA ATA AA . AT T C . T TG . TG . T T TT AA GAA . TCA C . T . . A A T T G AC A CG . A . . G T G A TT A . C AT ACT A . . G . C A G T GAG G T . . TC . A . AACTTGTTTTATATCT . . . C . . . C T T . GTATCTGTGCCCGCAACCTCC TT C C CTGAGG GAGATTCACCA C CT A . G . T CC T A CCAAA TT T TC C G . T T T . . . . C T AT A A TCG . A A CC . T . G . . GTGATT A C . G A C A C . TT AGAA TA G GAC T T A . T . T C ACCA G . T . CA T C . GGCTT CA . A C A C C A . T TATAAATAT AC . C TTCC AACATG C AA A . G T T T T A T . C G
blockSeqs : . . . C A C . . . A . T . . T . . T C . . . . . . . . . . T . . . . G . . . A AC TA . AT . . . . . . . . . . CG AA GAA . . C . T . . A . . . . . . C . . . . G . G A T . . . . ACT . . . G . C . G T AAA G . . . AC . C . AACTTGTTCTTCATCA . . . C . . . A A . . CCTGATCTTCCACAACACA C C C CT GGGATTGAACT C CT . . . . T CA . A CG . . . . G . A . . . . . . T T . A G T . A . . . G . G . . TTTTTG A C . G . . A G . CG A TC A GAC . T A . G . . C TGC . . . . . . C . GATCT TT . . . T C . . . C TAGA AC . . . . . TC A . A . . T . . . . T
blockSeqs : . . A . . . . T . . T G . . . . . . . . . . A . . . . T . . . A . TA . AT . . . . . . . . . . AG AA TTT . . A . G . . T . . . . . . C . . . . T . G A T . . . . ACT . . . A . T . A T AA G . . . AC . A . ACCTCACTAACAT . . . C . . . T A . . CCTAATATTCCACAACACC C C T CT TGAATAACA G TT . . . . T TC . A G . . . . A . A . . . . . . C T . G G G . G . . . G . A . . GAC A A . G . . G T . C A TC G GAT . T C . T . . C TGC . . . . . . C . CTCCT AA . . . C T . . . T TTA CC . . . . . AA A . A . . C . . . .
blockSeqs : . . A . . G G . . . . . . . . . . T . . . . G . . . A . TC . AG . . . . . . . . . . CG AG TTT . . G . G . . T . . . . . . C . . . . T . A G T . . . . AA . . . C . C . G C A T . . . . . A . ACCTCACCCGAAT . . . A . . . C T . . CCTAATATTCCACAACACC T C T TT TGAACT G TG . . . . A GA . C G . . . . A . A . . . . . . T T . T T G . T . . . G . T . . GTG G A . T . . G T . T A TC G AA . T C . T . . C T . . . . . . C . ATGA CG . . . C T . . . T CAT TA . . . . . GC A . T . . A . . . .
blockSeqs : . . A . . A G . . . . . . . . . . A . . . . T . . . A . AA . AT . . . . . . . . . . AG AT GAA . . A . A . . G . . . . . . A . . . . A . A G T . . . . . . . . C . . . . C . T . . . . . A . ACCTCACCCGAAT . . . . . . . C T . . CAA T . T . TAAA G TG . . . . A GA . C G . . . . . . . . . . . . . T T . T T G . T . . . G . T . . AAG G A . G . . A C . T A . . . . T A . T . . . C . . . . . . T . GAC CG . . . C C . . . T TAG TA . . . . . GC . . T . . A . . . .
blockSeqs : . . A . . A C . . . . . . . . . . T . . . . G . . . A . AG . A . . . . . . . . . . AT AA TTT . . . . G . . T . . . . . . . . . . . T . G A . . . . . . . . . C . . . C T . T . TAAA C TG . . . . T GT . A . . . A C . A G G . T . . . A . G . . AAG A T . A . . A A . T . . . . . G T . . . . . C . . . . . . . . GAC AT . . . C . . . . T AAG GT . . . . . AA . . C . . C . .
blockSeqs : . A G . . . . . . . . . . T . . . . G . . . G . AG . A . . . . . . . . . . AT AG . . . . . A G T . C . . . . . C . . ATA A C . . . .
blockSeqs : . A . . . . . . . . . . . A . . . . T . . . A . CA . . . . . . . . . . . . AA A
blockSeqs : . . . . . . . . . . T . . . . G . . . . . AG . . . . . . . . . . . . AT .
blockSeqs : . . . . .
blockSeqCons : ** G*** A*** *** ** AN AA N* ** N* *** T** A** T* AC* A** CCTATATTCCGCAACACC********** G***** **** T** A****** G******** ** **** A** *** ** A****** GA** TC*** *** GACC*** ** C* TAG*******
originalCons : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAACTGATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CC---CCT-A----T-TTCCACAACA--C-TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC--CGTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACC---A---TTGTCTATAGGAGGA-CTACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--GACCTACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TA-NAACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
finalCons : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-TG---GA-TC---TA-CA---TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCANACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAAN-TTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACTN-CTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAAT--CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAA--GATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATGT-GATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAAA--TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CCCCTATATTCCGCAACACC----------TGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAATG-----TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTCT--GTCTGCG--TGACAGA------TGTTAGTG--------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---ACA--ATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-T-AACACCA------TTGTCTATAGGAGGA--TACACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAATC---AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGAGACC---ACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACGTAG-------AACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
Alignments
lowQualScore : 1 1 1 1 1 1 1 1 3333333 1 11 1 1 2222 1 1 11 1 1 222 77777777777777 1 11 1 111 111 11 111 2222 2222 111 55555555555555555555555 5555555555555555555555555555 111111 4444444444444444444 222222 11111 1111111 111111111 1111 111111111 22222222222222222222 33333 111 3333333 2222222222 1111 111111 1
lowQualScore : 5 5 1 5 5 5 5 5 1 5 1111111 5 88 5 22 5 4444 5 5 1 88 3 3 3 111 33333333333333 7 0 33 3 0 3 0 0 5 5 1 5 4 1 5 8 4 4 3 3 3 3 3 4 4 1 8 55 4 4 8888 4 777 4 6666 222 11 4 88 4 4 4 4 55 777 55 55 4 4 44 44 222 5 000 22 5 1 5 77 0 66 5 5 5 0 5 77 5 66 5 5 000 5 3 5 1 1 999 5 5 0 5 66 2222 5 5 5 1 6 1 6 1 6 0000 1 6 6 6 666 6 888 6 33333333333333333333333 6 6 6 2 6 6 6 1 5 1111111111111111111111111111 0 66 77 4 1 666666 0000000000000000000 7 22 5 5 5 5 1 22 5 4 222222 99 6 99 6 3 6 3 6 6 6 5 5 44444 666 1 66 5555555 1 777777777 5 1 5 0 66 5 1 66 1 5 0000 444444444 66 1 888 1 0 5 5 1 1 77 5 5 22222222222222222222 5 5 1 1 5 1 0 5 5 4 33333 5 000 5 5 77 5 0 5 77 7777777 44 77 5 5 3 77 5 5 5 1 8888888888 22 5 5 2222 666666 5 22 2 0 5 1 5 5 1 5 5 0 6 6 1 1
lowQualScore : . . . . . . . . . . ....... . .. . .. . .... . . . .. . . . ... .............. . . .. . . . . . . . . . . . . . . . . . . . . . . . . .. . . .... . ... . .... ... .. . .. . . . . .. ... .. .. . . .. .. ... . ... .. . . . .. . .. . . . . . .. . .. . . ... . . . . . ... . . . . .. .... . . . . . . . . . .... . . . . ... . ... . ....................... . . . . . . . . . ............................ . .. .. . . ...... ................... . .. . . . . . .. . . ...... .. . .. . . . . . . . . . ..... ... . .. ....... . ......... . . . . .. . . .. . . .... ......... .. . ... . . . . . . .. . . .................... . . . . . . . . . . ..... . ... . . .. . . . .. ....... .. .. . . . .. . . . . .......... .. . . .... ...... . .. . . . . . . . . . . . . . .
lowQualScore : 5 5 0 5 5 0 5 5 0 0 0000000 0 55 5 00 5 0000 0 5 0 33 3 3 7 000 33333333333333 3 0 88 2 0 2 8 8 7 7 0 7 4 0 3 0 0 0 6 6 6 6 6 0 0 2 0 55 0 0 6666 0 000 0 9999 555 33 0 88 0 0 0 0 55 000 55 55 0 0 33 66 777 7 000 33 7 0 7 99 7 77 7 7 7 1 7 99 7 44 7 7 000 7 0 7 7 4 444 7 7 7 0 99 9999 0 7 7 0 7 0 7 0 7 7777 0 7 7 7 777 7 333 7 00000000000000000000000 7 7 7 5 7 7 7 0 4 1111111111111111111111111111 7 44 11 3 4 666666 4444444444444444444 9 11 7 7 7 7 9 33 7 9 888888 22 7 22 7 7 7 5 7 7 7 7 7 99999 777 4 99 6666666 4 555555555 0 0 0 2 99 0 4 99 4 0 6666 888888888 99 4 888 4 4 0 0 4 7 99 7 7 00000000000000000000 7 7 4 6 7 4 4 7 7 3 00000 7 000 7 7 99 7 7 7 99 0000000 77 99 7 7 0 44 7 7 7 4 1111111111 00 7 7 1111 444444 7 33 0 7 7 0 7 7 0 7 7 7 7 7 0 0
consensus : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAACTGATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CCCCT-A-TA---TT-----CCACAACA-CCTGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC-T-GTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--GATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-TA-ACACCA---TTGTCTATAGGAGGA--TA-CACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--G--A-C-TACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TAG-AACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
Reference ( family-561 ) : CTGTATTGGGATGCATAANGTTTCATAAAGTACGTCCTCTTCATTCTTACAGTATCAAGNATGCANGTTTTAAGTGCGTTTATTGGTAGAAAAGTCNNACAGTTATTGATCTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTCCTACTATTGATTANTAATATGTGTA--TGT-TAATA-CATAATTACG-GNTGTG----------C--TTATACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACATCATG-GACACACNGGGACTCAGT-ACACAG-TATAAAGTACGACANTGTTNTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCANACACC-ATGAATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCANACAAGAAATCTGTGTCAGACATCCAGACAGGATCTATGNNATGTTCTG-TCAGTCGTGT---GAA-NTTTCTG-CCTGTNTCCGATG-TTTAGAGCACCGA--AAACACCAACT-NCTGGA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATCATTG-ACAA-CAT---CAGAAGTGAGACTCTC-TATAACCGTCGTGTT-CTCCTGGCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCACAA--GATGTCAACAAAA-GC-CCAGAG-ACTGAAGNATCTGATTG-ACAC-TGTGGTATG-TGATGTTA-AA-CAAGATGCAGAGGTTTATTGA-TTGC-TAG-AATAC-AACAG-CAGAAGAGAAAA-A-TGAA-CAGAC-ACT--T-TCCT-CACCCG-A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CCCCT-A-TA---TT-----CCGCAACA-CCTGCC-GCTGTCCCCGACT----GA-----TG-----AA---CATGGACGATGCGA-GTCAGTT-AT-TG-GGTGGAAT-CACAGAAATCCAAAT----G-TC--AA-CAAGA--A-AACGACAAGTA-GAAATAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTG-TATTACACG----CGTC-T-GTCTGCG--TGACAG------ATGTTAGT--G------ATGT-GTNT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGGTA-TCTG----ATGGN---G---AC--AATCTCATCT---TGACAGA-CAC-AACAGGAGACGCTATACACCGT--GTGACAGATA-TA-ACACCA---TTGTCTATAGGAGGA--TA-CACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGAACATA-ACA-TCAAT-C--AAACT-GT---C-TATAGAC-AGTAAAAC--AG-TCACCACA-CTGTTAGAGA--G--A-C-CACATCACCATGGCGACCA--CGG-TGTGT-GTACTGCTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------TAG-AACNNTG-AT-A----CAGA------GACAGG-CAAGATANACCGGTACAACAGTACAGGACAACAC-GTNC-TGA-CNATGCA-ACAC-GACGACA-C-CGGTCACANACTNTA
gi|1 : CTGTATTGGGATGCATAAGGTTTCATAA-GTACGTC-TCTTTATTCT-ACAGT-TTAAGCATGCAGGTTTTAAGTGCGTTTATTGG-AAAAAAGTCAAACAGTTATTGATTTCATATGTTTGTCATTTTCTTGTCATCCCTTTATTTCCTTTTTCTACTATTAATTAATAATGTGTGTATCTGTCTGATA-CATAATTAGG-GTTGTGGTTTTTTTCAC--TTATACTTTGTACTGTTCTTGGTTT-TTTTCAAGCAGATTGTATTCCTAGAGACCCAGAA-TCTCCACATCATG-GACACA-TAGGACTCAGT-ACACAGTTATAAAGTACGACATTGTTCTCAATGTCAGGGGGGACACCGA-GTTCTAC-TGTCACA-CGTT-GTA-AACCATG-CCTGTGCT-TTACTGATGAGTAAGAAGAGGACAGGTCA-T--GAAA-TT---AA-C--ATTA---CCATCCACCAATG-ATGTTGTTATCT-ACC-GTT-G--AGAAAAA--GTTTAAAACT-ATAT-CCCC-GACAAG--TTCTGTGTCCGACATCCAGACAGGATCTATGAAATGTTCTGTTCAGTCGTGT---GAACTTTTCTGTCCTGTTTCCGATGTTTTAGATCACCAATTATGGACCAACTAACTGAA-CA-TAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CA-C-GAGAAATCATTATACAA-CACATACAGAACTGAGAATCTCGTATAACTGTTGTGTT--TCCT-GCAGGAATT-CCAAACTGATACCAAAA-CTTTGT-CCCCACAAATCTGTC-ACCG--TCAATCACAG--CATGGCAACAAAA-GCTCCAGAGAACTGAAGGATCTGATTGAACAC-TGTGGGATGTTGATACTACAA-CAA-ATACAGAAATTTATGTA-TTGCGTAGAAATACAAACAGCCAGAAGAGAAAATATTGAACCAGAC------C-GCCT-CACCCA-C-CACAAAACTGATAGAGGACAGATATGAAACAATCAGCACATACAAGAGTGCT-CA---TCTCTTGTTTATTAAAACCAGTCGTGTCCCCCAGATAAAGG-ACACCCCCT-A-TATCTTT-----CAACAACA--CTGCT-GC-GTCCTTGACT----GA-----GGATTCAAA---CATGGA-GATGTGA-GTCAGTTGAT-TGAGGGGGAAT-C-C-GAAATCCATAT----ATTC--AA-C-AGG--A-AACGACAAGTAGGAAATAG-ACGAGTGGTTGAA-ACTGACGATCCACAACCTGCTCTTA-ACAGAGTCGTCATAGTCTGCT--TGACAGTGTGTTGTATTACT--GGAGTTTACGTAGTTT----ATACC--TAGCTGTGAACCGTCAGACCGGGTCTGGGTATTCTGCCTCAAGAC---G---ACAAAATCTCACCTGCATGAC-GA-CAC-AACA-GAGACACTATACACCGTTAGTGACAACTA-GA---ACCAGGGTTATTAGCAGGAGGAGCTA-CAC-CA-GTCGACAGTTC-GGTGAACTGATTTATAATA-ACAGTAATGATACACA-TCAAT-CTAAAACT-GTTCAT-CATAGACAAATAAAAC--AT-TTACCACATTTGTTAGAGA--G----C-TACATCCACATGGAGCCCATTCAG-TGTGT-TTACTG-TCCCCGTCCAACTA-GAGATC-TGA--ATCGCGGACGTT----TA--AACAGTGCAT-A----CACT------GACAGG-CAAGAAATACC-GT-CAACAGTACAGGACAACATGGTAC-T-A-CTATACA-ATAC-AACAACA-CTCGGTCA
gi|10 : GGCAGGAA-T-CCAAACTGATATCCAAA-G-TTTGCCCTCACAAATCTGTC-ACCG--TAAATCACA---GATGTCAACAAAA-GC-CCAGAG-AATGAAGGATCTGATTG-ACAC-TGTGGTATT-TGAGGTTA----CAAGATACTGAGGTTTAGTGA-TTGC-CAG-AATTC-AACAA-CAGAAGAGAAAA-A-TGAA-CAGACAACT--TGTTTTATATC-----TACAGAACT-AT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCCGTTGTGTACCCCAGATAAA-G-AC-------------------------CAA-------TC-G-TGTCCCCCA------GG-----TA-----AA------GGGCAGTTCTA-GTCAGTT-AT-TG-AATGCCAT-CACA
gi|11 : TG-TCT--GTTTATTTTC-GGCAGATTGTATTCCTAAAGGCAGTGAT-CATCCACATCATG-GACATACTAAAATTCAGT-ACACAG-TATAAAGTACGGCAGTGTTCTCAATGTCA-GGGGGACACCGA-GTTCTAC-T-TCCCACCG-T-GTA-AA-CAT-ATCTATG-T-TTACGG-T--GTAAA
gi|12 : acacttCAG-TGTAAAGTACGACATTGTT-TCAATGTCACAGGGGACACCGAAGTTCTACCTGTCACA-CG-T-GTA-AA-C-TG-CCTATG-TCTTACTG-T--GTA--GAAA-GGCATGCCAGTCAA-GA-TC---TA-TCAA-TAAC-CCAAACACC-ATGA---TCGTGATTTTACC-G-T-G--AG---AA--GTTT--AAAT-GTAT-CCCTTTACGAGAAAACTGTGTCAGACATCCAAACacgaagattattaacagaaaaaaccacaaatatcaccatgttaggttttgtttaac
gi|13 : cagCCTTGGCAACCA--TGGATGT-T-G-ACTGA--CCCGTC--GCTGCGAGATTATGATGGTCG-GGATG------TTA-TATACTG-AT-A----CAGA------GACAGG-CA-GATTAAACGGTACAACAGTACAGGACAACAC-GTGCTTGATCTATACATGCAC-GACAACATC-TGGTCACAAACTCTA
gi|14 : CACA-CG-TTGTA-AA-C-TGATTTGTG-T-TTACAT-C--GTAAAGA-A-GACAT-----T--G--A-TCAAATA-T----TA---CCATACACC-ATGGATGTTGT-ATGT-ATT-G-T-GTGAG---AT--GTTT--AACT-ACAT-TCCCCGACAAG--ATATGTGTCAGACATCCGAACagttat
gi|15 : C-ACCTG-TATTACACA----CGTC-C-GTCTGTG--TGCCAA------ATGTTAAT--T------CTGT-GTAT-CACATATA--TGG-TGTTA--TGTCAGACCGAGTCTGGGTA-TCTG----GTAGA---C---AC--AGTCTCATCT---TGACAGA-CAC-AACAGtagagatgattt
gi|16 : AAAGAGA-TAC----C--T--T-GA-TC---AAAC--A-TA---CCATACGCC-ATGA----TGTGATGT-ATT-G-T-G--AG---AT--GTTT--AACT-ACGT-TCCCAGACAAGAAA--TGTGTCAAACATCCAAAC
gi|17 : AATGTCA-GGGGGACACCAA-GTTCTAC-TGTCTCA-CG-T-GTA-AA-CATGAtag
gi|18 : CACAAATCTATC-ATCA--TCGATTAC-A--GATGTCAACAAAA-
gi|2 : CTGT-TTGGGA-GCATAATGTTTCATAAAGT-CGTCCTCTTCATTTTTACAGTATCAAGAAT-CAC------AGTGC-TTTA--GGTAGAAAAATTCCACAGTT-TTGATC----ATGTTTATCATTTTCTTGTCATCC-TTTATTTCCTTTTCCTAC-ATTGATTACTAATATGTGTA--TGT-TAATAACATTATTATG--ATGTG----------CCATT-TACTTTATACTG-TCT--GTTTATTTTC-AGCAGATTGTATTCCTAAAGACCCAGAC-CCTCCACAGCATG-GACACACTAGGACTCAGT-ACACAG-TATAAAGTACGACATTGTTCTCAATGCCA-GGGGGACACCGA-ATTCTAC-TGTCACA-CG-T-GTA-AA-CATGACATGTG-T-TTACTC-T--GCAAAGAGA-GGCATGTCA-T--G-GA-TC---TA-C--A-TA---CAATCCACC-ATGAATGTTATGA-TT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCCGACAAGAAATTTGTGCCCGACATCCAGACAGGATCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTG-TCTGTTTCCGATG-TTTAGAGCACCGA--AAACACCAAAT-ATTGGA-CATTAGAACAGCCT-AT-CAA--AAAGCGA-CAA--CAA-CACC-GCGAAATCATTG-ACAA-CAT---CAGAAGTCAGACTATC-TATAACTGTCGTGTT-CTCCTGGCAGGAA-------------ATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAATCAC-A--GATGTCAACAAAA-GC-CCAGAG-ACTGAAGGATCTGATTG-ACAC-TGTGGTATG-TGATGTT---A-C-AGATACAGAGGTTTATTGATTTGC-TAG-AATAC-AACAA-CAAAAGAGAAAA-C-TGAA-CAAACAACTTGT-TCTT-CATC---A--ACAGAACT-CT-GAACACAGGTATG-AACAATCAGC-CA-ACAG-AGCGGTACAATTCCTCTTGTTTATAAAGACCAGTCGTGTCCCCCAGAAAAAG---------------------------------A-CCCGCC-G-TGTCCCCCA------GA-----TA-----AA------GGACAGTCCTA-GTCAGTT-AT-TA-AATGCAAT-CACAGAAATCCAACT----G-TC--AA-CAGGA--A-AACGGCAAGTA-GAATTAG-ACGAGTGTGTGAA-ACTGACG-TCCAC-ACCTA-TATTACACG----TGTC-T-GTCTGTG--TGACAG------ATGTTCGT--G------AAGT-GTAT-CACATATC--TGG-TGTGA--CGTCAGACCGGGTCTGGATA-TCTG----ATGGT---G---AC--AATCTCATCT---TGGCAGA-CAC-AACAGGAGACACTATACACCGT--GTGACAGATA-CA-ACTCCA---TTGTATATAGGAGGAC-TA-CACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGTGATTACA-ACA-TCAAT----AAACT-GT---C-TATAGAC-AATAAAAC--AG-TCACCACA-CTGTTAGAGA--G--G-CTTACATCACCATGGTTACCA--CGG-AGTGT-GTACTGTTCCCCGTCC-ACTG-GAGATC-TGATGGTCG-GGACG------CAT-AACACTG-AT-A----CAAA------GACAGG-CAAGATATCCCGGTACAACAGTACAGGACAACAG-GTAC-TGA-CTATACA-GCAC-GACAACA-C-CGGGCACACACTGTA
gi|3 : AGTATATGCA--TGT-TAATA-CAAAATGACGAGGTGT-----------C--TTATACTTTAAAATT-TCT--GTTTATTTTC-AGCAGA---------------CCCAG-T-CCTCCACATCATG-GACACACTAGGACGCCTT-ACTCAA-TATAAAGTACGGGAGTGTTGTCAATGCCA-GGGGGACACCGA-GTTCTAC-TGCCACA-CG-T-GTA-AA-TATGATCTGTG-T-TTCCAG-T--GTAAAGAGA-TACATGTCA-T--T-GA-TC---TA-C--A-TA---CCAAAGACC-AC-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTT--AACT-ACAT-CCCCAGACAAGAGATCTGTGTCCAACATCCGGAGAGGGTCTATGAAATGTTCTG-TCAGTCGTGT---GAA-CTTTCTT-TCTGTTTCCAATG-TTTAGAGCACCAA--AAACACCAAAT-AATGGA-CATTAGAACAGCCT-AT-CAAAGAAAGCGG-CAA--CAA-CACC-GGGAAATCATTA-ACAG-CAT---CAGAAGTGAGACTCTC-TATAACTGTCGTGTT-CTCCTGGCAAGAA-T-CCAAACTTATATTCAAA-C-TTGTCCGCCGCAAATATGGC-ACCG--TTCATCACAACTGATGCCAACAAAA-GC-CCAGAT-ATTGAAGAATCTGATTG-ATAC-TGTAGTATG-TGATACTAGAG-CAAGATGCAGAGGTTTATTGA-TTGC-AAA-AATAC-AACAA-CAAAAGAGAAAA-A-TGAA-GAGAC-ACC--T-CACT-AAC----A-TACAGAACT-AT-GAAGACAGGTATG-AACAATCAGC-CA-ACAA-AGCGGTACAATTCCTTTTGTTTATGAAGACCTATCGTATCCCCCAGAAAAAGG-CCA-CCCCTGA-TC---TT-----CCACAACA-CATGCT-GCTGTCCCTGACT----GAGAGATTC-----AC---CATGGAGGATGTTA-GTCAGTT-AT-TG-AGTGTCAT-CACAGAAATCCAAATCCAAA-TCTTAA-CAGTA--A-AACGGCAAGTA-GCGATAG-ACGAGTGTGTGAA-ACTGACG-CCCAC-ACCTG-TATTACACG----CGTC-C-GTCGGTG--TGATAG------GAGTTAGT--G------AAGT-GTGT-CACATATC--TCG-TGTGA--CGTCAGACCGGATCTGGGTA-TCTG----GTGGT---GATTAC--AATATTATCT---TGACAGA-CAC-AACAGGAGACACTATAGACTGT--GTGGCAGATA-TA-ATACC------------AAAAGGAC-CA-CACACA-GTGAACAGTTCTGGTGAACTGATTTAT-ATAGACAGGAAACATA-ACA-TCAA--C--AAACT-GT---C-GGTAGAC-AATAAAAT--AG-TCACCACC-CTGTTTGAGA--G--ATC-TACATCACCATGGAAACCA--TGG-GGGGT-GTATTGCTCCCCATTC-ACAG-GAGATC-TGTTTGTCG-GGATGTATAAATAT-AACCCTG-AT-A----CAGAAACATGGACAGG-CAAGATAAACCGGTACAACAGTACAGGTCAACAC-ATAC-TGA-CCATACA-TCAC-AACACCA-C-AGGTAAAATAC
gi|4 : AGACACTTCCACATCATGAGACACACAGGGACTCAGTTACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-T-ACTGGT--GAAAAGAGA-GACATGTCA-T--G-GAATC---TA-C--A-TAATACCAAGCACC-ATGAAGGTTGTGATTT-ACCCG-TTG--AA---AGTGGTCT--AGTTTACATTCCCCATACAG--AATCTGT-TTAGACACCCAGACAGGATCAATTTTATGTTCTG-TCAGTCGTGTTCAGAA--TTTCTG-CCTGTG-CCGATG-GTTAGAGCACCGA--AAACACCAACT-TCTGAAACATTAGAACAGCCTTATTCAAACAAAGCGAGCAAACCAAACAC--GAGAAATTATTG-ACAAACAT---CAGAAGTGAAACTCTA-TA-AACCGTCTTGTTTCTTTTATCGGGAA-TTCCAAACTGATATCCAAAAC-TTGTCCCCCACAAATCTGTCCACCG--TCAGTCACAACTGATGTTAGCAAAAAGC-CCAGAG-ACTGAAGCATCTGATTG-ACAC-TGTGGTATG-CGATGTTA-AAACAAGATGCATATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-AC-------CT-CACCCG-AATACAAAACT-AT-GAAGACAGATATG-AAAAATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CCCCT-AATA---TT-----CCACAACA-CCTGCT-GCTGTCCCTGACT----GAGGGATTG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC-T-CTCTGTG--TGACAG------TTATGATT--G------ATGT-TTTC-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---TTACAGA-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGATA-TA-ACACCA---TTGTCTATAGGA--A--TA-CACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--G--A-C---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TAG-AACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACAC-AACGACA-C-CGGTCAggaatag
gi|5 : CAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGCCA-GGGG-ACACTGA-GTTCTAC-TGTCACA-CG-T-GTA-AA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---CCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGATATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTCTTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACC-GAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-CTTTTATCGGGAA-T-CCAAACTGATATCCAAA-C-TTGTCCCCCACAAATCTGTC-ACCG--TCAGTCACAACTGATGTTAGCAAAA-AG-CCAGAG-ACTG-AGCATCTGATTG-A-ACATGT-GTATG-CGATGTTA-AA-CAAGATGCAGATGTTTATTGA-TTGC-TAG-AAT-------G-CAGATGAGAAAA-A-TGAA-CAGAC-A-------CCT-CACCCGAA-TACAAAACT-AT-GAAGACAGATATG-AA-AATCAGC-TA-ACAA-AGCGGTACAATTCCTTTTGTTTATAAAGACCCGTCGTGTCCCCCAGATAAAGG-ACA-CCCCTAA-TA---TT-----CCACAACA-CCTGCT-GCTGTCCCTGACTGAGGGA-----TG-----AA---CTTGGAGGATGTGA-GTCTGTC-AT-TG-GGAGGAAT-CCCAGAAATCCAAAT----G-AC--AT-CAAGA--A-AGCAAGAAATT-GGAATAG-ACAAGTGTGTAAA-ACTGATG-TCCAC-ACCAG-TATTACACA----CGTC-T-CTCTGTG--TGACAG------TTATGATT--G------ATGT--TTT-CACATCTC--TGG-AGTGA--AATCAGACTCTTTCTGGGTA-TCTG----ATGAA---G---AT--GATATCATCT---T-ACAAG-TAT-AAAAGAAGACGCTATGTACCGT--GTGACAGAT--TA-ACACCA---TTGTCTATAGGA--A--TA-CACACA-GTGAACACTTCTGGTGACCTGCTTTTT-ATAGACAATGAATATA-ACA-T--ATGC--AAACT-GC---C-TATAGAC-AGTGAAAC--AG-TCAACACA-CTGTTAGAGA--G--A-C---CATCACCATGGCGACCA--CAG-TGTGT-ATACTGCTCTCCGTCT-ACTG-ATGATC-TGATGGTCG-GGATG------TAGAAACTATC-AA-A----CAGA------TACAGG-CAAGATAGCCCGGT-------------ACAACAC-ATTT-TGA-CAATGCA-ACACAAACGACA-C-CGGTCAagc
gi|6 : ttTCGTGTCCCCAAGA-AAAGGTAAA-C---T-G-TA---TCTGTGCCCGCAACCTCCTGTTTGCTG-ACCTGATT----GA-----TG-----AATAACATAGACGATGTGAAGTCAATT-ACGTA-GATGGTATTCACAGAA-TCCAAATC---G-TC--AATCAAGATCACAACGACAA-TA-GAA-TAGTACGAGTGTGTGAATATTGACG-TCCAC-ACCTG-TATTAC-------CGCT-T-AATTGCAATTGGCAG------ATGTTAGTTCG------TTGT-GTTTACA-ATATC--TGG-TG-AA--CGTCAGACCGGGTCTGTTTA-TCTG----ATTAT---A---AA--AATTTC-TCT---TGACAGAACACCAACAGGAGACACAATACACCGT--GTGAC---TATTA-ACATCA---TGG--TATA----AA--TA-AGCACATGTGAA-AGTTCTGGTGAACTGATTTAT--TAGATAG-GAACGTA-AGATTCAAA-CCAAAACTGGT---CTTCTAGAC-AGTAAAAC--AGTTTACCACA-CTGTTAGA-A--GCTC-C-TACATCAagca
gi|7 : aaatcagt-TGTAAAACACGACAATGTTCTCAATGTCA-GGGGGATTCCGA-GTTCTAC-TGTCGCA-CG-T-GTC-AA-TATGACCTGTG-T-CTGCAG-T--GTAAAGAGA-TACACGTTA-T--T-GT-TC---TA-G--G-TT---CCCCACAAC-AT-AATGTTGTGATTT-ACC-G-T-G--AG---AA--GTTC--AAAT-CCGT-GTTCAAACAAGAAACCTGTGCGAGGCATCCAGACATGGTCTATGAAATATTTTG-CCGGCCGTGC---AAT-GTTCCTG-TGTGTATGCAATG-CTCAGACCACAGT--GGACATAAAAC-GATGGA-TCTTAAAACAGTAT-AC-GAAGCACTCCGT-CAA--CAA-CATA-GAACAGTCATTC-ATAG-AAT---TAGGGATGAAAGTCTC-TATAACTGCCATATC-CTCCTGACAGGAA-T-CGAAACGGATTT--AAA-C-ACGTGTCATGCAAACATCTC-ACAGATTCAG-AAAAA--GATGTCAATAAAA-TC-TCGGAG-AATAAAGCTTCtatgaggcct
gi|8 : G--TGAGAG------ATATTAGT--T------ATGT-GGCC-CACATTTCCCTCG-TCT----CAACAGACGAGCTTTGGGTG-AGTG----ATTTTTTTG---CC--AGGCTTATCT---TAGCTGA-CAC-AACAGGTACCACTCTAAATCGC--CTGACAGATA-CGGACCCCAGAATTATCTAT----GGA--TTTCACACG-ACCAGTAGTGCGGGTGAGCTGTTTTAC-ATAGACAGTGCACTTA-ACA-TCGG--C--AAACT-CT---C-TACTGCC-GACAATGCCAAG-TC--CATA-CTAATAAAGAATG--A----ACA--ACCATGGATACCA--AAT-TGTGTCGTG-TGCTCCCCCTCC-ACTG-GAGATC-TGCTGGTCG-GGATG------AAG-AAAGTTG-ATCATTCCCAAA------AACAGGCCAAAATAAAGAGATACAAAAGCACAGGCCGACAC-GTCC-AGA-CCGTGGA-A-AC-GAa
gi|9 : tCAGAC-ACTCCACATCATG-GACACACAGGGACTCAGT-ACACAA-TATAAGGTACAACAATGTTGTCAATGC----GGGGACACTGA-GTTCTAC-TGTCACA-CG-T-GTATAA-CATGATCTGTG-T-TTACTG-T--GTAAAGAGA-GACATGTCA-T--G-GA-TC---TA-C--A-TA---TCAAGCACC-ATGAA-GTTGTGATTT-ACC-G-T-G--AA---AA--GTTT--AGTT-ACAT-CCCCATACAAGAGATCTGTGTTAGACACCCAGACAGGATCTATTTTATGTTCTG-TCAGTCGTGT---CAA-ATTTCTG-CCTGTGTCCGATG-TTTAGAGCACCGA--AAACACCAACT-TCTGAA-CATTAGAACAGCCT-AT-CAAACAAAGCGA-CAA--CAA-CACCGGAGAAATTATTG-ACAA-CAT---CAGAAGTGAAACTCTT-TATAACCGTCTTGTT-Caccaagccggggatagaatatacagttt