lowQualScore : 22222222222
lowQualScore : 7 2 1 2 33 99 3 88888888888 1 6666 1 3 1 1 1
lowQualScore : . . . . .. .. . ........... . .... . . . . .
lowQualScore : 5 4 0 2 11 11 3 11111111111 3 1111 3 7 3 3 3
consensus : GGACGG-ACGG-ACA--CGAC-GGCGACTA------T----ATGCTCC-CCCG--A-AATTTTTCGG-GG-A-GCATAA
Reference ( gi|5 ) : GGATGG-ACAG-ACA--CGAT-GGCAACTA------A----ATGCTCC-CCTG--A-AATTTTTCGG-GG-A-GCATAA
gi|19 : GGACGG-ACAG-ACA--CAAC-GGCGA-TA------T----ATGCTCC-CC----G-AATTTTTCGG-GG-A-GCATA
gi|15 : GGACGG-ATGG-ACA--AGAC-CGCGACTA------T----ATGCTTC-CC-G--T-AATTTATCGG-GG-A-GCAT
gi|7 : GGATGGGACAG-AC---C------CACCTT------T----ATACTCC-CCTG--A-AA-TTTTCAG-GG-A-GCATGA
gi|8 : GACGG-ACGA-ACA--CGAC-GGCGACTA------TT---ATGCTCC-CCT---A-AATTTTTCAG-GG-A-GCATAtaaat
gi|9 : GACGG-ACGG-ACA--CGAC-AGTGACTA------T----GTGCTCC-CCTA--A-AATTTTTCAG-GG-A-GAATA
gi|10 : GAAGG-ACAG-ACA--TGA--AGCGGCTA------T----ATGTTCC-CCTA--A-AACTTTTCAG-GG-A-GCATAA
gi|3 : GAAGG-ACAG-ACA--TATC-AGCGACTACATGTAA----ATGCTTC-CCCA--A-AATTTTTCGG-TG-A-
gi|1 : aGAAGG-ACGG-ACA--CGAG-AACGACTA------ATAGTATACGCTACCAG--ACAATTTTTAGG-GG-A-GCATAA
gi|16 : gacaGACAG-ACGA-ACA--TGAC-AGCTACTATTACC-A----ATGCTCT-CATGAAA-AATCTTTCAG-
gi|11 : ACGG-ACGG-ACA--CGAC-GGCGACTA------T----ATGCTCC-CCCG--A-AATTTTTCAG-GA-A-GCATAA
gi|18 : ACGG-ACAG-ACA--CAAC-GGCGA-TA------T----ATGCTCC-CCCG--A-A-TTTTTCGG-GG-A-GCATAA
gi|12 : ACGG-ACGG-ACAAACGATCGGCAACTA------C----ATGCTCC-CCCG--A-AATTTTTCGG-GC-A-GCA
gi|13 : GG-ACGG-ATA--CGAT-GGCGACTA------T----ATGCTTC-CCCG--A-AATTTTTCGT-GG-A-GCATAA
gi|20 : GG-ACGG-ACA--CGAC-GGCGACTA------T----ATGCTCC-CCCG--A-AATTTTTCGG-AG-A-a
gi|6 : cggcGG-ACGG-ACA--TGAC-GGCGGATA------AT---ATGCTCC-CCCG--A-AATTTTTTGG-GG-A-GCATAA
gi|14 : agGG-ACGGGACA--TGAT-GGCGACTA------AT---ATGCTCC-CCCG--A-GATTTTTCGG-AG-AGGCAT
gi|17 : GG-ACGG-ACA--CAAC-AGCAACTA------T----ATGCTCC-TCCA--A-AATTTTTCGA-TG-A-GCATA
gi|2 : cCAG-ACA----------AACTG------C----ATGCTCT-TTTC--A-AATTTTTCAA-GG-A-GCATAA
gi|4 : acggaggaactcgacagTA------T----ATGCTCC-TCTA--A-AA-TTTTAGG-GG-A-GCATAA
gi|11 : atgacacatcggcgattatatgta----ATGCTTC-C-TG--A-AAAATTTCGG-GGGA-GCATAa
gi|18 : acggacggacacgacggcgacta----ATGCTCC-CC-G--A-AAAATTCGGG-GG-A-GCATAaa
gi|8 : acggacagacacaacggcgata----ATGCTCC-C-TG--A-AAAATTTAGG-GG-A-GCATAAaa
gi|6 : gacggacgaacacgacggcgacta----ATGCTCC-CCAA--A-AAATTTCGGG-GG-A-GCATAa
gi|19 : agggacggacatgacggcggataa----ATGCTCC-CCGA--A-AAATT--CGG-GG-A-GCATAaa
gi|10 : ggacggacagacacaacggcgata----ATGCTCC-CTGA--A-AAGTTTTAGG-GG-A-ACATAa
gi|21 : gaaggacagacatgaagcggcta----ATGCTCC-GCCG--A-AATTTTTCGG-GG-A-GCATAAaa
gi|21 : at----ATGCTCC-CC-G--A-AAAATTTCGGCGG-A-GCATAaag
gi|7 : a----ATGCTCC-C-TG--A-AAATTTCAGG-GG-A-GTATAAaaaag
gi|1 : ggatgggacagacccacct----ATGCTCC-CCTA--A-AAATTGTCTG-GT-A-GCGTAgataaat
gi|4 : gacagaaggacggacacgagaacgactaatagta----ATGCTCC-CCTA--A-AA-TTTTAGA-GG-A-GCATAaa
gi|22 : atgacacatcggcgattatatgtataGCTCC-CCTA--A-CATTTTTCGG-GG-A-GCATAAaaa
Alignments
lowQualScore : 1111 11111111
lowQualScore : 2 22 2 55555 0000 22222222 1 1 1
lowQualScore : . .. . ..... .... ........ . . .
lowQualScore : 1 99 1 33333 2222 44444444 9 9 9
consensus : GGACGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCGGGGA-GCATAA
Reference ( family-556 ) : GGACGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCGGGGA-GCATAA
gi|1 : GAAGGACGG-ACA--CGA-GAACG-----ACTAATAGTATA--------CGCTACCAGACAATTTTTAGGGGA-GCATAA
gi|10 : gacaGAAGGACAG-ACA--TGA--AGCG-----GCTA----TATG--------TTCCCCT-AA-AACTTTTCAGGGA-GCATAA
gi|11 : ACGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCAGGAA-GCATAA
gi|12 : ACGGACGG-ACAAACGATCGGCA-----ACTA----CATG--------CTCCCCC-GA-AATTTTTCGGGCA-GCA
gi|13 : GGACGG-ATA--CGA-TGGCG-----ACTA----TATG--------CTTCCCC-GA-AATTTTTCGTGGA-GCATAA
gi|14 : GGACGGGACA--TGA-TGGCG-----ACTAA---TATG--------CTCCCCC-GA-GATTTTTCGGAGAGGCATa
gi|15 : GGACGGATGG-ACA--AGA-CCGCG-----ACTA----TATG--------CT-TCCC-GT-AATTTATCGGGGA-GCAT
gi|17 : CGGACGG-ACA--CAA-CAGCA-----ACTA----TATG--------CTCCTCC-AA-AATTTTTCGATGA-GCATA
gi|18 : ACGGACAG-ACA--CAA-CGGCG-----A-TA----TATG--------CTCCCCC-GA-A-TTTTTCGGGGA-GCATAA
gi|19 : GGACGGACAG-ACA--CAA-CGGCG-----A-TA----TATG--------CTCCCC---G-AATTTTTCGGGGA-GCATA
gi|2 : ACGGAGGA-ACT--CGA-CAGCAGACAAACTG----CATG--------CTCTTTT-CA-AATTTTTCAAGGA-GCATAA
gi|20 : GGCGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCGGAGA-
gi|21 : cA----TATG--------CTCCGCC-GA-AATTTTTCGGGGA-GCATAA
gi|22 : G--------CTCCCCT-AA-CATTTTTCGGGGA-GCATAAaag
gi|3 : GAAGGACAG-ACA--TAT-CAGCG-----ACTA----CATGTAAATG--CTTCCCC-AA-AATTTTTCGGTGA-aaatgt
gi|4 : aG-ACA--CAT-CGGCG-----ATTA----TATGTATATATGCTCCTCT-AA-AA-TTTTAGGGGA-GCATAA
gi|5 : atGGATGGACAG-ACA--CGA-TGGCA-----ACTA----AATG--------CTCCCCT-GA-AATTTTTCGGGGA-GCATAAa
gi|6 : GGACGG-ACA--TGA-CGGCG-----GATAA---TATG--------CTCCCCC-GA-AATTTTTTGGGGA-GCATAA
gi|7 : agGGACAG-ACC--C-A-C----------CTT----TATA--------CTCCCCT-GA-AAT-TTTCAGGGA-GCATGA
gi|8 : ggatgGACGGACGA-ACA--CGA-CGGCG-----ACTAT---TATG--------CTCCCCT--A-AATTTTTCAGGGA-GCATAtaaat
gi|9 : GACGGACGG-ACA--CGA-CAGTG-----ACTA----TGTG--------CTCCCCT-AA-AATTTTTCAGGGA-GAATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GACAGACGAACATGACAGCTACTATTACCAATGCTCTCATGAAAAATCTTTCAG
Alignments
lowQualScore : 1111 11111111
lowQualScore : 2 22 2 55555 0000 22222222 1 1 1
lowQualScore : . .. . ..... .... ........ . . .
lowQualScore : 1 99 1 33333 2222 44444444 9 9 9
consensus : GGACGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCGGGGA-GCATAA
Reference ( family-556 ) : GGACGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCGGGGA-GCATAA
gi|1 : GAAGGACGG-ACA--CGA-GAACG-----ACTAATAGTATA--------CGCTACCAGACAATTTTTAGGGGA-GCATAA
gi|10 : gacaGAAGGACAG-ACA--TGA--AGCG-----GCTA----TATG--------TTCCCCT-AA-AACTTTTCAGGGA-GCATAA
gi|11 : ACGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCAGGAA-GCATAA
gi|12 : ACGGACGG-ACAAACGATCGGCA-----ACTA----CATG--------CTCCCCC-GA-AATTTTTCGGGCA-GCA
gi|13 : GGACGG-ATA--CGA-TGGCG-----ACTA----TATG--------CTTCCCC-GA-AATTTTTCGTGGA-GCATAA
gi|14 : GGACGGGACA--TGA-TGGCG-----ACTAA---TATG--------CTCCCCC-GA-GATTTTTCGGAGAGGCATa
gi|15 : GGACGGATGG-ACA--AGA-CCGCG-----ACTA----TATG--------CT-TCCC-GT-AATTTATCGGGGA-GCAT
gi|17 : CGGACGG-ACA--CAA-CAGCA-----ACTA----TATG--------CTCCTCC-AA-AATTTTTCGATGA-GCATA
gi|18 : ACGGACAG-ACA--CAA-CGGCG-----A-TA----TATG--------CTCCCCC-GA-A-TTTTTCGGGGA-GCATAA
gi|19 : GGACGGACAG-ACA--CAA-CGGCG-----A-TA----TATG--------CTCCCC---G-AATTTTTCGGGGA-GCATA
gi|2 : ACGGAGGA-ACT--CGA-CAGCAGACAAACTG----CATG--------CTCTTTT-CA-AATTTTTCAAGGA-GCATAA
gi|20 : GGCGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCGGAGA-
gi|21 : cA----TATG--------CTCCGCC-GA-AATTTTTCGGGGA-GCATAA
gi|22 : G--------CTCCCCT-AA-CATTTTTCGGGGA-GCATAAaag
gi|3 : GAAGGACAG-ACA--TAT-CAGCG-----ACTA----CATGTAAATG--CTTCCCC-AA-AATTTTTCGGTGA-aaatgt
gi|4 : aG-ACA--CAT-CGGCG-----ATTA----TATGTATATATGCTCCTCT-AA-AA-TTTTAGGGGA-GCATAA
gi|5 : atGGATGGACAG-ACA--CGA-TGGCA-----ACTA----AATG--------CTCCCCT-GA-AATTTTTCGGGGA-GCATAAa
gi|6 : GGACGG-ACA--TGA-CGGCG-----GATAA---TATG--------CTCCCCC-GA-AATTTTTTGGGGA-GCATAA
gi|7 : agGGACAG-ACC--C-A-C----------CTT----TATA--------CTCCCCT-GA-AAT-TTTCAGGGA-GCATGA
gi|8 : ggatgGACGGACGA-ACA--CGA-CGGCG-----ACTAT---TATG--------CTCCCCT--A-AATTTTTCAGGGA-GCATAtaaat
gi|9 : GACGGACGG-ACA--CGA-CAGTG-----ACTA----TGTG--------CTCCCCT-AA-AATTTTTCAGGGA-GAATA
blockSeqs : G AA T GACAA A TATATATG . . G
blockSeqs : . . . . A TAAATG . . .
blockSeqs : . . . . T . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqCons : ****
originalCons : GGACGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCGGGGA-GCATAA
finalCons : GGACGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCGGGGA-GCATAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GACAGACGAACATGACAGCTACTATTACCAATGCTCTCATGAAAAATCTTTCAG
Alignments
lowQualScore : 1111 11111111
lowQualScore : 2 22 2 55555 0000 22222222 1 1 1
lowQualScore : . .. . ..... .... ........ . . .
lowQualScore : 1 99 1 33333 2222 44444444 9 9 9
consensus : GGACGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCGGGGA-GCATAA
Reference ( family-556 ) : GGACGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCGGGGA-GCATAA
gi|1 : GAAGGACGG-ACA--CGA-GAACG-----ACTAATAGTATA--------CGCTACCAGACAATTTTTAGGGGA-GCATAA
gi|10 : gacaGAAGGACAG-ACA--TGA--AGCG-----GCTA----TATG--------TTCCCCT-AA-AACTTTTCAGGGA-GCATAA
gi|11 : ACGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCAGGAA-GCATAA
gi|12 : ACGGACGG-ACAAACGATCGGCA-----ACTA----CATG--------CTCCCCC-GA-AATTTTTCGGGCA-GCA
gi|13 : GGACGG-ATA--CGA-TGGCG-----ACTA----TATG--------CTTCCCC-GA-AATTTTTCGTGGA-GCATAA
gi|14 : GGACGGGACA--TGA-TGGCG-----ACTAA---TATG--------CTCCCCC-GA-GATTTTTCGGAGAGGCATa
gi|15 : GGACGGATGG-ACA--AGA-CCGCG-----ACTA----TATG--------CT-TCCC-GT-AATTTATCGGGGA-GCAT
gi|17 : CGGACGG-ACA--CAA-CAGCA-----ACTA----TATG--------CTCCTCC-AA-AATTTTTCGATGA-GCATA
gi|18 : ACGGACAG-ACA--CAA-CGGCG-----A-TA----TATG--------CTCCCCC-GA-A-TTTTTCGGGGA-GCATAA
gi|19 : GGACGGACAG-ACA--CAA-CGGCG-----A-TA----TATG--------CTCCCC---G-AATTTTTCGGGGA-GCATA
gi|2 : ACGGAGGA-ACT--CGA-CAGCAGACAAACTG----CATG--------CTCTTTT-CA-AATTTTTCAAGGA-GCATAA
gi|20 : GGCGGACGG-ACA--CGA-CGGCG-----ACTA----TATG--------CTCCCCC-GA-AATTTTTCGGAGA-
gi|21 : cA----TATG--------CTCCGCC-GA-AATTTTTCGGGGA-GCATAA
gi|22 : G--------CTCCCCT-AA-CATTTTTCGGGGA-GCATAAaag
gi|3 : GAAGGACAG-ACA--TAT-CAGCG-----ACTA----CATGTAAATG--CTTCCCC-AA-AATTTTTCGGTGA-aaatgt
gi|4 : aG-ACA--CAT-CGGCG-----ATTA----TATGTATATATGCTCCTCT-AA-AA-TTTTAGGGGA-GCATAA
gi|5 : atGGATGGACAG-ACA--CGA-TGGCA-----ACTA----AATG--------CTCCCCT-GA-AATTTTTCGGGGA-GCATAAa
gi|6 : GGACGG-ACA--TGA-CGGCG-----GATAA---TATG--------CTCCCCC-GA-AATTTTTTGGGGA-GCATAA
gi|7 : agGGACAG-ACC--C-A-C----------CTT----TATA--------CTCCCCT-GA-AAT-TTTCAGGGA-GCATGA
gi|8 : ggatgGACGGACGA-ACA--CGA-CGGCG-----ACTAT---TATG--------CTCCCCT--A-AATTTTTCAGGGA-GCATAtaaat
gi|9 : GACGGACGG-ACA--CGA-CAGTG-----ACTA----TGTG--------CTCCCCT-AA-AATTTTTCAGGGA-GAATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GACAGACGAACATGACAGCTACTATTACCAATGCTCTCATGAAAAATCTTTCAG