lowQualScore : 2 22 4444444 111 111 1 222222222 1111 77777777777777777777777777 1 88888888888888888888888888888888888888888888888888 111 11 555555 3 3 4 11 111111 111 33 111 22 3333 2222 88888888888888888888888888888888888888888888888888 11111 44444444444444 22 11 5555555 11 1 2222 22 11 11 4444444 1111 111 88888888888888888 222222 1 33333333333333333333333 22222 111111 11 33333333333 1 11 3333333333 1111 1111 5555555555555555555555555555555555555555555555555555 222 4444 2222 111 3 22222 444444444 11 22 11 11 777777777777777777777777 55555 1 333333333 1 1 1 1 1 1 1 1 1 2 33 2 11 11 2 22 2222 4444444444 1 1 111 1 1 1 1 1 11 555555 1 1 111 111 8888888888888888888888888888888888888888888888888888888 1 2222222222222222222 3
lowQualScore : 7 22 1111111 6 6 111 111 5 222222222 8 88 3333 88888888888888888888888888 5 22222222222222222222222222222222222222222222222222 444 0 8 88 99 666666 0 0 3 8 8 5 0 8 11 8 666666 666 8 8 44 999 11 1111 7777 0 8 999 88888888888888888888888888888888888888888888888888 1 888 66666 22222222222222 0 8 33 33 2 6 0000000 22 0 1111 33 33 33 2222222 4444 777 55555555555555555 11 0 6 6 555555 1 7 99999999999999999999999 99 99 99 77777 6 666666 11 44444444444 0 8 11 5555555555 9999 8 8 9999 2 8888888888888888888888888888888888888888888888888888 8 2 99 444 8888 2 555 9999 2 4444 000 5 6 11111 99 000000000 88 0 0 33 66 99 0 11 444444444444444444444444 11111 3 99 333333333 5 6 5 5 9 0 0 0 3 0 0 2 11 1 3 33 88 7 2 44 6666 9999999999 00 0 0 111 0 0 7 5 3 3 88 666666 0 0 111 4 3 777 3333333333333333333333333333333333333333333333333333333 0 8888888888888888888 6 1
lowQualScore : . .. ....... . . ... ... . ......... . .. .... .......................... . .................................................. ... . . .. .. ...... . . . . . . . . .. . ...... ... . . .. ... .. .... .... . . ... .................................................. . ... ..... .............. . . .. .. . . ....... .. . .... .. .. .. ....... .... ... ................. .. . . . ...... . . ....................... .. .. .. ..... . ...... .. ........... . . .. .......... .... . . .... . .................................................... . . .. ... .... . ... .... . .... ... . . ..... .. ......... .. . . .. .. .. . .. ........................ ..... . .. ......... . . . . . . . . . . . . .. . . .. .. . . .. .... .......... .. . . ... . . . . . . .. ...... . . ... . . ... ....................................................... . ................... . .
lowQualScore : 5 33 5555555 7 7 777 777 5 555555555 0 88 0000 88888888888888888888888888 0 22222222222222222222222222222222222222222222222222 000 8 0 88 00 000000 8 8 2 0 0 0 0 0 00 0 000000 000 0 0 44 888 44 0000 8888 8 0 888 66666666666666666666666666666666666666666666666666 0 333 77777 88888888888888 8 0 88 88 5 5 5555555 55 0 2222 88 88 22 5555555 8888 555 88888888888888888 66 8 7 7 777777 7 3 00000000000000000000000 22 22 88 77777 7 222222 00 66666666666 0 0 00 2222222222 0000 0 0 8888 2 8888888888888888888888888888888888888888888888888888 0 7 33 111 9999 4 111 9999 4 1111 000 8 7 00000 22 444444444 88 8 8 00 44 66 8 00 666666666666666666666666 33333 3 22 000000000 0 0 5 0 0 0 0 0 2 0 0 8 88 2 2 22 88 5 5 88 0000 5555555555 55 0 0 000 0 0 3 3 3 3 33 777777 0 0 000 0 2 555 2222222222222222222222222222222222222222222222222222222 0 3333333333333333333 7 7
consensus : CTTTTGAAAAAAAGCTT--AGAGAGTCA-GT-G-CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG---CT--TAGTTTT--TTTT-GGTTTTTTTGTTTTTT-TTTTGTTTTTGNT-TTTA-TT-TT--------ATTTATT-AT--AT--TCATAA---TTTCT-CTTTAAATTAAT-AAAA-TAAAAA-TAA--TATAAAGAAT-TGA-AA-TGAT-AGCA-TC-G--AG-C---A--GTTCAA-G-G-TGT-AG-TTAA--TTTTGAAA-AGTGTTT-TAATTTATTGTTTAAATG-GTAT-ATAAT--ACAGA-GG-CNGTAGGACTTGA---TTT--GA--CGAAGGGGG--GGGGGGC-ACACTTA-----AAA----AAA------ATCACAG-AAAGTT-GTA--TAGTCTAAA--CGCA-CTAAC-TAG-CTG----CTGATG-TTT--CTGAAAT-TGG------TG-T--GATT---AACCTAAAGAAATGTTTT-----C-AGAACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CGG-T-G----GATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCG--TTCAAT--TT-----TTTTCCCTANCTG-TT--AAGAGAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAACAATATGT-TCTCC---CCA-CC--AAAGTGG----GGG-GAGG-GGGCA---TTATA-AACCA-AGTTTG-GAAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGG-TATTATAA-TTTCCTC--GTGTAAAT----GT--ATTGGTC-GT-TTTGATTGTA-AAA-CA-TCT--TTT-A------TAAAGTCTTTTTACGAAATACCTTTGCATACA-GACC-CTTAAAA-TAATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAATTCTATGT-GGAAGTCTCACATAGCTG-TACGCCAAGCCGTTACACATTCTT-ATTATAGAGCGC-ACCGC-GTTTA-T-G-ATTTTCT-GTAAA-CACG-TG-TA--CCCC-GGTGTT-AC-CTTGATGACGCGAC-T-TTNTATA---TAGA------ATG----------A--TTTT-TNCCAGGA-TCCCA-ATCTACGC-A-TGCGCA-TTGGAGGGCTT--AACTCGCAAC-ACAATA-GTCAGTG
Reference ( gi|1 ) : CTTTTGAAAAACAGCTTT-AGAGAGTCATGTTG-CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG---CT--TAATTTT--TTTTGGGTTTTTTTGTTTTTTGTTTTGTTTTTGGT-TTTA-TT-TT--------ATTTATT-ATTCAT--TCATAA---TTTCT-CTTTAAATTAAT-AAA--TAAAAATTAAT-TATAAAGAATATGA-AA-TGATCAGCAGTC-G--AG-C---A--GTTCAA-G-G-TGT-AG-CTAA--TTTTGAAATAGTGTTT-TAGTTTACTGTTTAAATG-GTAT-ATAATC-ACAGA-GGACTGTAGGACTTGA---TTT--GAAGGGAAGGGGG--GGGGGGC-ACACTTA-----AAA----AAA------TTCACAG-AAAGT--GTA--TAGTCTAAAATCGC--CTAAC-TAG-CTG----CTGATGGTTT--CTGAAAT-TG-------TG-T--GATT---AACCTAAAGAAA-----T-----C-AGAACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CTG-T-A----GATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCTGCG--TTCAAA--TT-----TTTTCCCTACCTG-TT--AATAGAAG----TGT-G--TGT-AT-GT---GCGCTGACA----AAAACTTCT-TG-TGGACG--CGGG--CCCACAG-A-CA-------GG-CCAAA-AACCAATATGT-TCTCC---TCA-CT--AAAGTGGCA-AGGG-GAGG-AGTCA---TTATACAACCA-AGTCTG-GAAAGC--ATGAAATAATATC-AATCATTAAATA-TTTGTGTAAAGGG-TATTATAATTTTCCTC--GTGTAAA-----GT--ACTTATC-GT-TTCCATTGTACAAATCA-TCT--TT--A------TAACGTCTTTTTACGACATACCTTTGCATACA-GACC-CTTAAAA-TAATCT-AATG-CTATAAAGATGTTACCAGATTA-TAGAATTCTATGTGGGAAGTCTCACATAGCTGTTACGCCAACCTCTTACACACTCTT-ATTATAGAGCGC-ACCGC-GTTTA-T-G-ATTTTCT-GTAAAACACG-TG-TA--CC---GG-GTT-AC-CTTGATGACGCGAC-T-TTATATA---TAGA-----TATG----------A--TTTTACCCCAGGATTTCCACATCTACGCTATTGCGCA-TTGGAAGGTTT--AACTCACAAC-ACAATACGTCAGTG
gi|2 : CTTTTGAAAAA-AGCTTA-GGAGAGTCA-GT-G-CA-G-TTTTAGA---TTATTTTTTTCATTATCTTGA-GA-GG-ACATGA--G---CTGTTAGTTTT--TTTTTG---TTTTTGTTTTTT----TG-----GAT-TTTA-TT-TT--------ATTTATT-AT--AT---CATGA---TT-CT-CTTTAAATTAAT-AAAA-TAAAAAATCAG-TATAA-GAAT-TGA-AA-TGAT-AGCA-TC-G--AG-C---A--GTTCAA-G-G-TGTTAG--TCA--TGTTGAAA-AGTGTTT---ATTTA-TGTTAAAATG-GTATCATA-----CAGA-GG-CAGTTAGACTTGA---TTT--GA----------------GGGC-ACACTTA-----AAA----TAA------ATCACAG-AAAGTT-GTA--TAGTCTAAA--CGCA-CTAAC-TAG-CTG----CTGATG-TTT--CTGAAATCTGA------TG-T--GATT---ATCCTAAAGAAA-----TGTTTTC-A---CAATTTCTTAAT-GAAT---T-CCATTAA-CAGCTT---C-ATTA-CGG-T-G----GATTT--GAA--CACAAT-TTT--A-CTCA-TTT-CT--G-G--TTCA----TT-----TTTCCCCTACGGGGTT--AAAAG--G----TGT-G--TGT-AT-GN---NNNNNNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNC---------------G-CCAAA-AACCAATATGT-TCTCC---CCA-CT--AAAGTG----AAGG-GAGG-AGGCA---TTATA-AACCA-AGCTTT-GAAAGC--ATGAAA-AATACA-AATCATTAAATA--TTGTGTAAAGGGATA-TATAA-TTTCCTC--GTGTAAA-----ATAAATGTATT-GTCTTTGATTGTA-AAA-CATTCT--TTTAA------GAAAGTC-TTTTACGAAATTACTTTGCATACAGGACCTCTTAAAA-T-ATCT-AATGCCTAAAAAGATG-TACCCGATTATTAGAA-TATATGT-GGAAGTCTCACATAGCTAGTACGCCAAAGCCTTACACATTCCTAATTATAGAGCGC-ACCGC-GTTTA-T-GAATTTTCTAGT-AAACACG-TG-TACCCC---GGTGTTGAC-CTTGATGACGCGAC-T-TTTTA-A---TAAG-----AATG----------A--TTTT-TACCAGGATTC---CATCTACGC-A-TGCGCA-TTTGAAGGCTTTAAACTCA-AAC-A-AATA-GTCAGT
gi|6 : aaaataggCTTTTGAAAAA-AGCTT--AGAGAGTCA-GT-G-CA-G-T---AGA---TTA-TCTT------AT-TTGA-GAGGG-A--TGG-TG---CT--TAGTGTT--------GTTTTTTT-TTTTTTATTTT-------AT-TTTA--T-TT--------ATTCATT-A-------TCATAA---TTTCT-CTTTAAATTAATAAAA--TAAAAA-TAA--TATAAAGAAT-TGA-AA-TGAT-AGCA-TC-G--AG-C---A--GTTCAA-GAG-TGT-AA--TAA---TTTGAAA-AGTGGTT-TA-TTTAT--TTTAAATG-GTAT-AT-----ACAGA-GG--CGTAGGAC-TGA---TTT------TGAAGGGGG--GGGGGGC-ACACTTA-----AAA----AA--------TCACAG-AAAGT--GTA--TAGTCTAAA--CGCA-CTAAC-TAG-CTG----CTGAT-GTTT--CTGAAAT-TG-------TG-T--GATT---AACCTAAAGAAATGTTTT-----C-AG-ACAA-TTCTTA-T-GAA----TTCCATT-AACAGC--T-TC-ATTA-CGG-T-G----GATTT--GAA--CACAAT-TTA----CTCA-TT---TCTGCG--TTCAA----T-----TTTTCCCTA-CTG-TT--AA-AGAGG----TGT-G--TGA-AT-Gtcagtgcagttgccggcagctg
gi|15 : tttagCTTTTGAAAAA-AATCTT-ACAGAGTCA-GT-G-CA-G-T---AGA---TTA-TCTT------Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|8 : caagtttagTTTTGAAAAAAAGCTT--AGAGAGTCCAGCTG-TA-GTT---AGA---TTA-TCTT------AA-TTGA-GA-GG-G--AGG-CG-------TACTTAT--T-----GTTTTTTT-TTTTTT------TTTATGGTATTTG-TTATT--------ATTTATT-ATC--------TAG---ATTCT-CTTTAAATTAAA-AAA--TAAAAA-TAATATATTAAGAAT-TGA-AA-T-AT-AGCA-TCGG--AGCC---A--GTTCAA-G-GTTGT-AG-TTAAT-TTTTGAAAAAGTGTTT-TA-TTTATTG-TTAAATGCGT----TAATTAACAGA-GCGCTA-GGGAC-TGA---TTT-----TCGAAGGGGG--GGGGGGC------TA-----AAA----GA
gi|3 : tttagctTTTGAAAAAAAGCTTTTCGAGAGTC-CGTGGGCAAG-T---AGAACTTTATTCTT-------T-TTGACGA-GGGA--TGGGTGGGCCT--TCTTTTTATTTTT---TTTTTTTGTTTTTT----TGTTTTTGTT-TTTT-TT-TTTTTTTTTGTTTTATTAATTTATTATCATAAAATTTTCTCCTTTAAATTAAT--AA--TAAAGA-TA---TATAAAG-AT-TGAGAA-TGATAGGCA-TC-GGAGG-CACAA--GTTTAACG-G-T-T-AGTTTAAGTTTTTGAA--AGTGTTTGTAATTTAATGTAT-ACTG-GTAA-AT--TA-ACAGGCGGTAAATAGGGCTTCGTTTTTT--GAA---AAGGGGGGAGGGGGGCAAGACTTACAAAGAAA----AAAAAATCTTTCACAGCACAGTTGGTA--TAGT-TATAACGGC--CCACCTTAGTTTGCACCCTGGTGTTTTTCCTGAAAT-TGGGGGGGTTG-TTGAATTAAGAACCTAAAGAAATGTTTT-----CAAGACCAATTTTTCT-T-GAATGAATTCCATTAAAAAGCTTTCCC-ATTA--GG-T-AGGGGGATTT--GAAATCA-AAT-TTACTC-CCCATTTT-CTTGGCGTTTTCGAA--TTATTTATTTTTCTAACTTT-TTTAAAGCGAGGTTTTTGT-GGTTGTAAT-GTACCGCCCTGAC------AAACT--T-TG-TGGA-A--CGGACTCCCACAG-ACCACCGCATTGG-CCAA------AACAT-T-TTTCC---CCA-CTACAAAGTGGAA-AGGGAGAGGCGGGCATTTTTATAAAACC--AGTT---GAAAGC--A
gi|4 : tttaaagcttaAAAAAAAGCTTG-AGAGA-TCAGGT---CA-G-T---AGA---T-AT-CTT------AT-TTGA-G--GG-A--TGG-TG---TT--TAGT---------GGGTTTTTTTTTTTTTT-TTTT-TTTTTGTT-TTTAATT-TT--------ATTAGTT-AT--AT---CATAA---TTTCT-CTTTAAATTAAT-AAAATTAAAAA--AA--TATAAAGAATGTTA-AACTGAT-AGCA-TC-G--AG-C---AGCGTTCAA---G-TGT-GG--TAA--TTTTGAAATAGTGTTT-TA-TTTA-TG-TTAAATG-CTAT-AT-ACC-ATAGG-CG-----AGGACT--A---TTT------TGAAAGGGT--GGCGGGC-ACACTTA-----AAA----AAA-------TCAC-G-AAAGA--TTACCTA-TTTAAA--CGCCACTAA--TAG-CTG----CTGATG--TT--CTGAAA--TG-------TGTT--GATT---AACCTAAAGAGAATGTTT-----C--GAACAATTTC-TA-TGGAA-----TCCATT-AACAGC--T-TC-ATT--CGGTT-G----GATTT--G-A--CTCAA--TTA--CTTTCA-T----TCTGCG--TTCAAT--TT-----TTTTCCCTTACTG-TT--AA-AGAGG----TGTCG--TGT-AT-G--------NNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNNNN-N-NN-------NN-NCAAA-AACAAATATG--TCTCC---CCA-CT---AAGTGG-A-AGTT-GAGG--GACA---TTATA-AACTA-AGTCTG-AAAGCC--ATGAAA-AAT-TCAAATCATTAAGTAGTTTGTGTAAATGG-TA-TATAAATTTCCTCGAGTATAAT-----GT--ATTGGTC--T-TT--ATTGTA-AAA-CATTCTTATT--A------TAAAGTCTTTT
gi|14 : ttaattagctctaaaattatgaGTAGGACT-GA---TTTTTGAAGGG---------GGAGGGC-AGACTTA-----AAACAAGAAA------ATCAAAG-AAaaagcgaaaacagatccctaa
gi|5 : aaggc-----T-----C-AGA-CA-TTTCTTA-T-GTAT---T-CCATTAA-CAGTTT-----ATTATCGG-T-G----GTATT--GAA--CACAATGTTA--C--TCA-TTTACATCGCG--TTCAATGTTT-----TTTTCGCTAACTG-TT--AAGAGTGA----TGT----TGT-ATTGT---GCGCTGACGTTTTATAACTTCTATT-TAGAC---TGGA--CCCACAG-A-CA-------GGTCCAAGTAAACAACATGTCTCTCCAACTCG-CT--AAAG-GGAACAGGG-GAGG-GGGCC---ATATA-AACCATAGTTTTTGAAAGCTGATGAAA--ATATC-AATCATTAAATA-TTTG-G-AAAGTG-TATAATA-CTTTCCTC--GTGTAAAT----GT--ATGTGTCTGT-TTG-ATTGTA-AAA-CA-TCT--TT--A------TAAAGTCTTTT-ACGAAATACTTTTGCATACA-GACC-CTTAAAATTAATCT-AATG-CTAAAAAGATGATACCCGATTA--AGAATTCTATGT-GGAAGTTCCACATAGCTG-TACCCCAAGCCGTTACACATAATT-AT--TAGAATGC-ACCGCGGTTTT-T-G-ATTTTCT-GTAAACTACGTTGTTA--CCCCTGT-GTT-ACGCTTGATGACGCGAC-TATTATATA---TAGA------ATG----------A--TTTT-TACCAGGA-TTCCA-ATCTACGC-A-TGCGCA-TTGGA
gi|12 : aaaagaatgtttTA-T-GAAA---TTCAATTTAACAGC--T-TCAATTA-CGG-TGG----GATTTTCAAG--CACA---TTA----CTCA-TTT-TT
gi|13 : gagaaatgttatcagacatatacatc---GCGCTGA-------AAACTTTG-TGATGGACAGATGGA--CCCAAAGGA-CA-------GG-CCAAA-A---AACATG--CCTCC---GCA-CC--AAAGGGG----GGG-GGGg
gi|16 : CAAA-AAC-AATGT----CTCC---CCA-CC--AAAGTGGGG-GGGG-GGGG-GG
gi|29 : AAA-GAC--ATATGT--CTCC---CCA-CC--AAAGTGG----GGG-GGGggggaacataa
gi|24 : AA-AAACAATATGT--CTCT---CCA-CC--AAAGTGG----GGG-GAG
gi|23 : AA-AAACAATATGT--CTCC---CCA-CC--AAAGTGG----GGA-GAGacataa
gi|20 : AA-AAACAATATG--TCTCC---CCA-CT--AATGTGG----GGG-GAacataat
gi|22 : AA-AAACAATATG--TCTCC---CCA-CC--ATAGTGG----GGG-GAGaacataatg
gi|30 : AA-AAACAATATG--TCTCC---CCA-C---AAAGTGG----GGG-GAacataat
gi|7 : A-AAACAATATGT--CTCC---CCA-CT--AAAGTGG-A-AGGG-AAGG-GG-CA---TTATA-AACCA-AGTTTG--AAAGC--ATGAA---------------CAAATA-TTTGTGTAAAGG--TAT-ATAATTT-CCTT--GTGTAAAT----GT--ATTGGTC----TTTGATTGTA--AACCA-TCT--TTT-A------TAAAAGTATTTTACGAGATAC------------------TTAAAA-TAATCTGAATG-CTA-AAAGATGT-ACC-GAT-A-TAGAAT-CTATGTGG-AAGTCTCACATAGCTGT-ACGCCAAGCCGTTACACA-TCTA-ATTATAGAGCGCCACCGC-TGTTA-TTG-ATTTTCT-GTAAA-CACG-TG-TA--CCCC-GGTGTT-AC-CTTGATGATGCGACTT-TTATATA---TAG-------ATG----------ATTTTTTA-CCCAGGA-TTCCA-ATCTACGC-A-TGCGCA-TTGGAGG--TT--AACTCACA---ACAATAGTTCAGTG
gi|10 : A-AAACAATATGT--CTCC---CCA-CT--AAAGTGG-A-AGGG-GAGG--GACA---TTATA-AACCA-CGTTTG--AAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGC-TA-TATAA-TTTCCTC--GTGTAAATTTATGT--ATTGGTC----TTTGATTGTA-AAA-CA-TCT--ccggtgggcactga
gi|25 : A-AAACAATATTG-TCTCC---CCA-CC--AAAGTGG----GGG-GAAG-A
gi|27 : CAATATGT--CTCC---CCA-CC--AAAGTGG----GGG-GAGcat
gi|19 : aaAATATGT--CTCC---TCACCC--AAAGGGG----GGG-GGGG-GGACA---TAATAacataa
gi|9 : aatATTGTA-AAA-CA-TCT--TT--AATTTTATAAAGTCTATT-ACCAAATAC-TTTGCATACA-GACC-CTTAAAA-TAATCT-AACG-CTAAAAAGATG-AACCCGATTA-TAGAA-TCTATGT-GGAAGTCTCACATAGCTG-TACGCCAAGCCGTTACACA----------------GC-ACCGC-GTTTATT-G-ATGTTCC-GT
gi|11 : tttgTT-AG-CTTGATGACGCGAC-T-CTTTATAGATTAGACTGAGTCTGATAATAAGGTA--TTTTTTCCC--GAATCCCA-ATCGA----AT----CATTTGGA--GTTT--A----GCAACAACAATA-GTCAGTGtgtttccatgatttgttacagctattga
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GTGTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): AAAAACAATATATCTCCCCTCCAAAGTTGGGGGGGGGGGGTATT
Unaligned ( gi|21 ): AAAAACAATACGTGTCCCCACCAAAGTTGGGGGAGACATAAT
Unaligned ( gi|26 ): GATGTAGTGATCAAGAGGTTTTCATAATGTAATATCCGT
Unaligned ( gi|28 ): ATGTTGAGGATGTGTTGAATCGAAGATATCAGTAACT
Unaligned ( gi|31 ): TTTCTAAAAAAAAAAAAATGCATTAAATGTCT
Alignments
lowQualScore : 111 111 111 1 111111 22222222222222222222 11 22222222 44444444444 111 1111 111111 111 1111 1 222 1111 222222222 222222 111 444444 111111 1111 111111 1111 11 222 11 111 4444444444 11 111 1111111111 2222 1 2222 1111 2222 11 2222222222 11 111111 1111 1111 111 2222222 1111 222222222222 222 1111 111 111 11111 1111 33 1 2222222 1 1 1 11 222222 1 1 1 111 5555555555555555 11111 1111 11 1 1 1
lowQualScore : 555 5 5 5 5 555 77 5 5 000 000 2 666666 6 6 6 9999 88 99999999999999999999 888 6 6 3 1 3 7 44 44444444 22222222222 111 6 3333 6 99 99 6 6 6 6 6 6 99 6 111111 111 6 6 2222 99 3 555 4444 6 111111111 5 555555 55 000 111111 77 5 0 999999 2222 999999 6 7777 3 8 11 222 0 11 3 8 88 444 0000000000 8 11 444 5 7777777777 66 55 5 5555 5 7777 5 5 5 7777 77 77 77 1111 5 5 99 0000000000 99 44 666666 4444 4444 6 6 111 7777777 8888 6 6666 99 0 999999999999 6 2 2 111 333 2 22 2 4444 0000 2 22 3 0 777 5 5 333 77 6 3 3 6 6 2 777 6 6 66666 6 4444 6 44 0 5 5 1 6 2222222 1 3 99 3 6 6 8 0 8 8 0 6 5 0 88 11 8 8 8 8 5 222222 66 8 8 8 8 8 8 8 0 0 0 2 3 8 8 8 8 1 0 444 8 88 3333333333333333 44444 8 2 88 8 8 3333 33 3 44 3 0 2 0 0
lowQualScore : ... . . . . ... .. . . ... ... . ...... . . . .... .. .................... ... . . . . . . .. ........ ........... ... . .... . .. .. . . . . . . .. . ...... ... . . .... .. . ... .... . ......... . ...... .. ... ...... .. . . ...... .... ...... . .... . . .. ... . .. . . .. ... .......... . .. ... . .......... .. .. . .... . .... . . . .... .. .. .. .... . . .. .......... .. .. ...... .... .... . . ... ....... .... . .... .. . ............ . . . ... ... . .. . .... .... . .. . . ... . . ... .. . . . . . . ... . . ..... . .... . .. . . . . . ....... . . .. . . . . . . . . . . . .. .. . . . . . ...... .. . . . . . . . . . . . . . . . . . . ... . .. ................ ..... . . .. . . .... .. . .. . . . . .
lowQualScore : 000 7 7 7 7 999 99 7 7 000 000 0 444444 7 7 7 3333 33 88888888888888888888 888 7 7 5 0 2 5 00 22222222 77777777777 777 7 7777 7 22 22 7 7 7 7 7 7 22 7 888888 777 7 7 5555 22 3 333 8888 7 888888888 7 000000 11 000 777777 99 7 7 333333 1111 222222 7 6666 2 0 00 000 8 00 2 0 88 000 0000000000 0 00 000 7 9999999999 44 99 7 7777 7 4444 7 7 7 9999 99 99 11 4444 7 7 88 2222222222 22 22 888888 2222 2222 7 7 777 3333333 0000 7 2222 22 8 000000000000 7 2 0 444 555 0 88 0 2222 5555 0 88 6 7 888 0 7 000 99 7 2 2 7 7 5 555 7 7 77777 7 2222 7 55 1 7 7 4 7 5555555 7 5 22 5 7 7 0 8 0 0 8 0 0 8 88 44 0 0 0 0 0 444444 22 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 8 000 0 88 0000000000000000 00000 0 8 88 0 0 5555 88 2 55 2 0 5 0 0
consensus : CTTTTGAAAAAAAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAGTTTTTTTTGG-TTTTTTTTTTT-TTT-TTTTGTTTTTGNTTTTA-TTTT--------ATTTATTA---T--AT--TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TG-TAGTT--AATTTT--GAAA-AGTGTTT-T-ATTTA-TGTTTAAATG-GTATATAAT--ACAGAGG-CGG----TAGGACTTGA---TTTGATG--AAGGGGG--GGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTT-AT-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTC---AAT--T-TT--TTTCCCTA-ACTGTT---AA-AGAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATATGT-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTG-GAAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTC--TTTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAA-TAATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAATTCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACATTCTT-ATTATAGAGCGC-ACCGC-GTTTA-T-G-ATTTTCT-GT-AAAC-ACG-TG-TACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGA-ATGA----------------TTTT-T--NCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAAGGTTT--AACTCACAAC-ACAATA-G-TCAGTG
Reference ( family-533 ) : CTTTTGAAAAAAAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAGTTTTTTTTGG-TTTTTTTGTTT-TTT-TTTTGTTTTTGNTTTTA-TTTT--------ATTTATTA---T--AT--TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TG-TAGTT--AATTTT--GAAA-AGTGTTT-TAATTTATTGTTTAAATG-GTATATAAT--ACAGAGG-CNG----TAGGACTTGA---TTTGACG--AAGGGGG--GGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTT-AT-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTC---AAT--T-TT--TTTCCCTA-NCTGTT---AAGAGAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATATGT-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTG-GAAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTCGTTTTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAA-TAATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAATTCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACATTCTT-ATTATAGAGCGC-ACCGC-GTTTA-T-G-ATTTTCT-GT-AAAC-ACG-TG-TACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTNTATA---T-AGA-ATGA----------------TTTT-T--NCCAGGA-TCCCA-ATCTACGC-A-TGCGCATTGGAGGGCTT--AACTCGCAAC-ACAATA-G-TCAGTG
gi|1 : CTTTTGAAAAACAGCTTT-AG-AGAG-T-CATG-TTG--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAATTTTTTTTGGGTTTTTTTGTTT-TTTGTTTTGTTTTTGGTTTTA-TTTT--------ATTTATTA---TTCAT--TCATAA---TTTCT-CTTTAAATTAATAAA-TAAAAA--TTAATTATA--AAGAA--TATGA-AATGATCA-GCAGTC-G--AG-C---A--GTTCAA-G-G-TG-TAGCT--AATTTT--GAAATAGTGTTT-TAGTTTACTGTTTAAATG-GTATATAATC-ACAGAGGACTG----TAGGACTTGA---TTTGAAGGGAAGGGGG--GGGGGGC-ACACTTA-----AAA----AAAT------TCACAG-AAAG-T--GTATAGTCTA-AAATCG---C-C--TAACTAGC-TGCTGATGGTTT---CTGAAAT-TG-------TG-T--GATT---AACCTAAAGA-AAT-----C-AGA-----ACAATTTCTT-AT-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CTG-T----AGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCTGCGTTC---AAA--T-TT--TTTCCCTA-CCTGTT---AATAGAAG----TGT-G--TGT-AT-GT---GCGCTGACA----AAAACTTCT-TG-TGGACG--CGGG--CCCACAG-A-CA-------GG-CCAAA-AACC-AATATGT-TCTCC---TCA-C--TAAAG-TG----GCAA-G-GG--GAGG-AGTCA---TTATACAACCA-AGTCTG-GAAAGC--ATGAAATAATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AATTTTCCTCGTG-----TA-A----A-GTACTTATCGTTTCCATTGTACAAATCA-TC-T-T-----T-ATAACGTCTTTTTA--CGACATACCTTTGCATACA-GACC-CTTAAAA-TAATCT-AATG-CTATAAAGATGTTACCAGATTA-TAGAATTCTATGTGGGAAGTCTCACATAGCT-GTTACGCC-AACCTCTTACACACTCTT-ATTATAGAGCGC-ACCGC-GTTTA-T-G-ATTTTCT-GTAAAAC-ACG-TG-TA--CCGG-GTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGATATGA----------------TTTTAC--CCCAGGATTTCCACATCTACGCTATTGCGCATTGGAAGGTTT--AACTCACAAC-ACAATACG-TCAGTG
gi|10 : A-AAAC-AATATGT--CTCC---CCA-C--TAAAG-TG----GAA--G-GG--GAGG-GA-CA---TTATA-AACCA-CGTTTG--AAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGCTA--TAT-AA-TTTCCTCGTG-----TA-AATTTATGTATTGGTC--TTTGATTGTA-AAA-CA-TCT
gi|11 : TT-AG-CTTGATGACGCGAC-T-CTTTATAGATT-AGA-CTGAGTCTGATAATAAGGTATTTT-T--TCCCGAA-TCCCA-ATCGAATC-A-T-----TTGGA--GTTT--A----GCAACAACAATA-G-TCAGTG
gi|12 : AGA-AATGTTATC-AGACATATACA---TCT--AT-GAAA---TTCAATTTAACAGC--T-TCAATTA-CGG-TG---GGATTTTCAAG--CACA---TTA----CTCA-TTT-TTcgtttactgac
gi|13 : g---GCGCTGA-------AAACTTTG-TGATGGACAGATGGA--CCCAAAGGA-CA-------GG-CCAAA-AAAC----ATG--CCTCC---GCA-C--CAAAG-GG----G----G-GG--GGGg
gi|14 : AGG-C-G----TAGGACT-GA---TTTT-TG--AAGGGGG--AGGG--C-AGACTTA-----AAACAAGAAAA------TCAAAG-AA
gi|15 : aCTTTTGAAAAAAATCTT--AC-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTA-TCTT------A
gi|16 : caagtttagAA-AAAC-AATGT----CTCC---CCA-C--CAAAG-TG----G----G-GG--GGGG-GGG
gi|18 : cAA-AAAC-AATATA--TCTCC---CCT-C--CAAAGTTG----G----G-GG--GGGG-GGGTA---TTggggggaacataa
gi|19 : AAT-AATATG--TCTCC---TCACC--CAAAG-GG----G----G-GG--GGGG-GGACA---TAATA-
gi|2 : CTTTTGAAAAAA-GCTT--AGGAGAG-T-CA-G-T-G--CA-G-TTTTAGA---TTATTTTTTTCATTATCTTGA-GA-GG-ACATGA--G--CTGTTAGTTTTTTTTTG-TTTTT--GTTT-TTT-T---G-----GATTTTA-TTTT--------ATTTATTA---T--AT---CATGA---TT-CT-CTTTAAATTAATAAAATAAAAAATC-AGT-ATA--A-GAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TGTTAGTC---ATGTT--GAAA-AGTGTTT---ATTTA-TGTTAAAATG-G--TATCAT--ACAGAGG-CAG----TTAGACTTGA---TTTGA----------------GGGC-ACACTTA-----AAA----TAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAATCTGA------TG-T--GATT---ATCCTAAAGA-AATGTTTTC---------ACAATTTCTTAAT-GAA----TTCCATT-AACAGC--T-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTT--A-CTCA-TTT-CT--G-GTTC---A----T-TT--TTCCCCTACGGGGTT---A--AAAGG----TGT-G--TGT-AT-GN---NNNNNNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNC---------------G-CCAAA-AACC-AATATGT-TCTCC---CCA-C--TAAAG-TG----A----A-GG--GAGG-AGGCA---TTATA-AACCA-AGCTTT-GAAAGC--ATGAAA-AATACA-AATCATTAAATA--TTGTGTAAAGGG-ATATAT-AA-TTTCCTCGTGTAAAATA-A----ATGTATT-GTC--TTTGATTGTA-AAA-CATTCTT-T-----TAAGAAAGTC-TTTTA--CGAAATTACTTTGCATACAGGACCTCTTAAAA-T-ATCT-AATGCCTAAAAAGATG-TACCCGATTATTAGAA-TATATGT-GGAAGTCTCACATAGCTAG-TACGCCAAAGCC-TTACACATTCCTAATTATAGAGCGC-ACCGC-GTTTA-T-GAATTTTCTAGT-AAAC-ACG-TG-TACCCCGGTGTTGAC-CTTGATGACGCGAC-T-TTTTA-A---TAAGA-ATGA----------------TTTT-T--ACCAGGA-TTCC--ATCTACGC-A-TGCGCATTTGAAGGCTTTAAACTCA-AAC-A-AATA-G-TCAGT
gi|20 : aaaataggAA-AAAC-AATATGT--CTCC---CCA-C--TAATG-TG----G----G-GG--GAtcagtgcagttgccggcagctg
gi|21 : AA-AAAC-AATACGT-G-TCC---CCA-C--CAAAG-TT----G----G-GG--GAGaacataatg
gi|22 : AA-AAAC-AATATGT--CTCC---CCA-C--CATAG-TG----G----G-GG--GAGacataat
gi|23 : AA-AAAC-AATATGT--CTCC---CCA-C--CAAAG-TG----G----G-GA--GAGacataat
gi|24 : AA-AAAC-AATATGT--CTCT---CCA-C--CAAAG-TG----G----G-GG--GAGacataat
gi|25 : A-AAAC-AATATTG-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAAG-acataa
gi|27 : AAC-AATATGT--CTCC---CCA-C--CAAAG-TG----G----G-GG--GAGacat
gi|29 : AA-AGAC-A-TATGT--CTCC---CCA-C--CAAAG-TG----G----G-GG--GGGacataa
gi|3 : TTTGAAAAAAAGCTTTTCG-AGAG-T-CC-G-T-GGGCAAG-T---AGAACTTTATTCTT-------T-TTGACGA-GGGA--TGGGTGGGCC--T---TCTTTTTAT-TTTTTTTTTTTGTTT-TTTTGTTTTTGTTTTTT-TTTTTTTTTTTGTTTTATTAATTT--ATTATCATAAAATTTTCTCCTTTAAATTAAT--AATAAAGA--T--AT-ATA--AAG-A--T-TGAGAATGAT-AGGCA-TC-GGAGG-CACAA--GTTTAACG-G-T--TAGTTTAAGTTTT--TGAA-AGTGTTTGTAATTTAATGTAT-ACTG-GTAAAT--T--A-ACAGG-CGGTAAATAGGGCTTCGTTTTTTGA-A--AAGGGGGGAGGGGGGCAAGACTTACAAAGAAA----AAAAAATCTTTCACAGCACAG-TTGGTATAGT-TATAA--CGGCCCACCTTAGTTTGCACCCTGGTG-TTTTTCCTGAAAT-TGGGGGGGTTG-TTGAATTAAGAACCTAAAGA-AATGTTTTCAAGA-----CCAATTTTTC-TT-GAATGAATTCCATTAAAAAGCTTTCCC-ATTA--GG-TAGGGGGATTT--GAAATCA-AAT-TTACTC-CCCATTTT-CTTGGCGTTTTCGAAT--TATTTATTTTTCTA-ACTTTTTTAAAGCGAGGTTTTTGT-GGTTGTAAT-GTACCGCCCTGAC------AAACT--T-TG-TGGA-A--CGGACTCCCACAG-ACCACCGCATTGG-CCAA-------AACAT-T-TTTCC---CCA-CTACAAAG-TGGAAAG----G-GA--GAGGCGGGCATTTTTATA-AAACC-AGTT---GAAAGC--A
gi|30 : tttaaagcttaAA-AAAC-AATATG--TCTCC---CCA----CAAAG-TG----G----G-GG--GA
gi|4 : AAAAAAAGCTT---G-AGAGAT-CA-G-G-T--CA-G-T---AGA---T-AT-CTT------AT-TTGA-G--GG-A--TGG-TG--TT--TAGTG------GG-TTTTTTTTTTT-TTT-TTTT-TTTTTGTTTTTAATTTT--------ATTAGTTA---T--AT---CATAA---TTTCT-CTTTAAATTAATAAAATTAAAA--A-AAT-ATA--AAGAATGT-TAA-ACTGAT-A-GCA-TC-G--AG-C---AGCGTTCAA---G-TG-TGG-T--AATTTT--GAAATAGTGTTT-T-ATTTA-TG-TTAAATG-CTATATA----CCATAGG-CG------AGGACT--A---TTT--TG--AAAGGGT--GGCGGGC-ACACTT------AAA----AAAA------TCAC-G-AAAGATT-ACCTA-TTTA-AA--CGC--CAC--TAA-TAGC-TGCTGATG--TT---CTGAAAT---G------TGTT--GATT---AACCTAAAGAGAATGTTTC---GA-----ACAATTTC-T-ATGGAA-----TCCATT-AACAGC--T-TC-ATT--CGGTT----GGATTT--G-A--CTCAA--TTA--CTTTCA-T----TCTGCGTTC---AAT--T-TT--TTTCCCTT-ACTGTT---AA-AGAGG----TGTCG--TGT-AT-GN---NNNNNNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNNNN-N-C--------------AA-AAACAAATATG--TCTCC---CCA-C--T-AAG-TG----G----A-AGTTGA-G-GGACA---TTATA-AACTA-AGTCTG-AAAGCC--ATGAAA-AAT-TCAAATCATTAAGTAGTTTGTGTAAATGGTA--TATAAA-TTTCCTCGAG-----TATA----ATGTATTGGTC-TTT--ATTGTA-AAA-CATTCTTAT-----T-ATAAAGTCTTTTAAAGCGAAA-----------ACA-GATC-CCTAA
gi|5 : ttaattagctctaaaattatgaAAAAG-AATGTTTTC-AGA------CA-TTTCTT-AT-GTAT---T-CCATTAA-CAGTTT-----ATTATCGG-T----GGTATT--GAA--CACAATGTTA--C--TCA-TTTACATCGCGTTC---AATGTT-TT--TTTCGCTA-ACTGTT---AAGAGTGA----TGT----TGT-ATTGT---GCGCTGACGTTTTATAACTTCTATT-TAGAC---TGGA--CCCACAG-A-CA-------GGTCCAAGTAAAC-AACATGTCTCTCCAACTCG-C--TAAAG--G----GAACAG-GG--GAGG-GGGCC---ATATA-AACCATAGTTTTTGAAAGCTGATGAAA-A-TATC-AATCATTAAATA-TTTG-G-AAAGTGTAT-AAT-AC-TTTCCTCGTG-----TA-A----ATGTATGTGTCTGTTTGATTGTA-AAA-CA-TCTT-T-------ATAAAGTC-TTTTA--CGAAATACTTTTGCATACA-GACC-CTTAAAATTAATCT-AATG-CTAAAAAGATGATACCCGATTA--AGAATTCTATGT-GGAAGTTCCACATAGCT-G-TACCCC-AAGCCGTTACACATAATT-AT--TAGAATGC-ACCGCGGTTTT-T-G-ATTTTCT-GT-AAACTACGTTGTTACCCCTGTGTT-ACGCTTGATGACGCGAC-TATTATATA---T-AGA-ATGA----------------TTTT-T--ACCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGA
gi|6 : CTTTTGAAAA-AAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTA-TCTT------AT-TTGA-GAGGG-A--TGG-TG--CT--TAGTGTT-----G-TTT-----TTT-TTT-TTTTATTTT--ATTTTA--TTT--------ATTCATTA----------TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-GAG-TG-TAA-T--AA-TTT--GAAA-AGTGGTT-T-ATTTAT--TTTAAATG-GTAT---AT--ACAGAGG-C-G----TAGGAC-TGA---TTT--TG--AAGGGGG--GGGGGGC-ACACTT-------AA----AAAA------TCACAG-AAAG--T-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-T-G------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AG------ACAA-TTCTT-AT-GAA----TTCCATT-AACAGC--T-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA----CTCA-TTT-CT--GCGTTC---AA-----TT--TTTCCCTA--CTGTT---AA-AGAGG----TGT-G--TGA-AT-G
gi|7 : tttagA-AAAC-AATATGT--CTCC---CCA-C--TAAAG-TG----G----AAGG--GAAG-GGGCA---TTATA-AACCA-AGTTTG--AAAGC--ATGAA---------------CAAATA-TTTGTGTAAAGG-TAT--AT-AA-TTTCCTTGTG-----TA-A----ATGTATTGGTC--TTTGATTGTA-AAC-CA-TCTT-T-----T-ATAAAAGTATTTTA--CGAGATAC------------------TTAAAA-TAATCTGAATG-CTAAAA-GATG-TACC-GAT-A-TAGAAT-CTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACAT-CTA-ATTATAGAGCGCCACCGC-TGTTA-TTG-ATTTTCT-GT-AAAC-ACG-TG-TACCCCGGTGTT-AC-CTTGATGATGCGACTT-TTATATA---T-AG--ATGA----------------TTTT-TTACCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAGG--TT--AACTCACA---ACAATA-GTTCAGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|8 : TTTTGAAAAAAAGCTT--AG-AGAG-TCCA-GCT-G--TA-GTT---AGA---TTA-TCTT------AA-TTGA-GA-GG-G--AGG-CGTACT--TA-------TTGT-TTTTTTTTTTT-TTT-TATGGTATTTG---TTA---TT--------ATTTATTA----------TC-TAG---ATTCT-CTTTAAATTAA-AAAATAAAAA--T-AAT-ATATTAAGAA--T-TGA-AAT-AT-A-GCA-TCGG--AGCC---A--GTTCAA-G-GTTG-TAGTT--AATTTTTGAAAA-AGTGTTT-T-ATTTATTG-TTAAATGCGT---TAATTAACAGA-G-CGC----TAGGGACTGA---TTTT-CG--AAGGGGG--GGGGGGC------TA-----AAA----GAccggtgggcactga
gi|9 : tttagctTTTGATTGTA-AAA-CA-TCTT-TAATTTT-ATAAAGTCTATT-A--CCAAATAC-TTTGCATACA-GACC-CTTAAAA-TAATCT-AACG-CTAAAAAGATG-AACCCGATTA-TAGAA-TCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACA----------------GC-ACCGC-GTTTATT-G-ATGTTCC-GT-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|26 ): GATGTAGTGATCAAGAGGTTTTCATAATGTAATATCCGT
Unaligned ( gi|28 ): ATGTTGAGGATGTGTTGAATCGAAGATATCAGTAACT
Unaligned ( gi|31 ): TTTCTAAAAAAAAAAAAATGCATTAAATGTCT
Alignments
lowQualScore : 111 111 111 1 111111 222222222222222 11 22222222 4444444444 111 1111 111111 111 1111 1 111 3333333 222222 44444 1111 111111 1111 111111 1111 11 222 11 111 4444444444 11 111 2222222 1111 2222 1111 2222 11 2222222222 1111 1111 1111 111 2222222 1111 222222222222 222 1111 111 111 11111 1111 1 2222222 1 1 1 11 222222 1 1 1 111 5555555555555555 11111 11 11 1 1
lowQualScore : 555 5 5 5 5 555 77 5 5 000 000 2 666666 6 6 6 9999 88 555555555555555 1 6 6 00 999 7 999 44444444 3333333333 111 6 3333 6 99 99 6 6 6 6 6 6 99 6 111111 111 6 6 2222 1 99 3 222 6 6 6 55 6 1111111 5 333333 55 22222 2222 5 0 999999 2222 999999 6 7777 3 8 11 222 0 11 3 8 88 444 0000000000 8 11 444 5 5 0000000 66 0 5 5 8888 5 8 5 4444 5 5 5 7777 77 77 77 1111 5 5 99 0000000000 99 66 99 99 3333 4444 4444 6 6 111 7777777 8888 6 6666 99 0 999999999999 6 2 2 111 333 2 22 2 4444 0000 2 22 3 0 777 5 5 333 77 6 3 3 6 6 2 777 6 6 66666 6 4444 6 77 77 0 5 5 1 6 2222222 1 3 99 3 6 6 8 0 8 8 0 6 5 0 88 11 8 8 8 8 5 222222 66 8 8 8 8 8 8 8 0 0 0 2 3 8 8 8 8 1 0 444 8 88 3333333333333333 44444 8 88 8 8 7 33 33 3 8 3 22 0 0
lowQualScore : ... . . . . ... .. . . ... ... . ...... . . . .... .. ............... . . . .. ... . ... ........ .......... ... . .... . .. .. . . . . . . .. . ...... ... . . .... . .. . ... . . . .. . ....... . ...... .. ..... .... . . ...... .... ...... . .... . . .. ... . .. . . .. ... .......... . .. ... . . ....... .. . . . .... . . . .... . . . .... .. .. .. .... . . .. .......... .. .. .. .. .... .... .... . . ... ....... .... . .... .. . ............ . . . ... ... . .. . .... .... . .. . . ... . . ... .. . . . . . . ... . . ..... . .... . .. .. . . . . . ....... . . .. . . . . . . . . . . . .. .. . . . . . ...... .. . . . . . . . . . . . . . . . . . . ... . .. ................ ..... . .. . . . .. .. . . . .. . .
lowQualScore : 000 7 7 7 7 999 99 7 7 000 000 0 444444 7 7 7 3333 33 888888888888888 0 7 7 22 000 5 333 22222222 5555555555 777 7 7777 7 22 22 7 7 7 7 7 7 22 7 888888 777 7 7 5555 7 22 3 555 7 7 7 77 7 5555555 7 000000 11 00000 1111 7 7 333333 1111 222222 7 6666 2 0 00 000 8 00 2 0 88 000 0000000000 0 00 000 7 7 6666666 44 1 7 7 7777 0 7 0 0000 7 7 7 9999 99 99 11 4444 7 7 88 2222222222 22 77 22 22 5555 2222 2222 7 7 777 3333333 0000 7 2222 22 8 000000000000 7 2 0 444 555 0 88 0 2222 5555 0 88 6 7 888 0 7 000 99 7 2 2 7 7 5 555 7 7 77777 7 2222 7 99 99 7 7 7 4 7 5555555 7 5 22 5 7 7 0 8 0 0 8 0 0 8 88 44 0 0 0 0 0 444444 22 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 4 8 000 0 88 0000000000000000 00000 0 88 0 0 0 22 88 2 8 2 55 0 0
consensus : CTTTTGAAAAAAAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAGTTTTTTTTGGTTTTTTTT-TTT-TTT-TTTTGTTTTTGNTTTT-ATTTT--------ATTTATTA---T--AT--TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TGT-AGTT--AATTTT--GAAA-AGTGTTT-T-A-TTT-A-TGTTTAAATG-GTATATAAT--ACAGAGG-CGG----TAGGACTTGATTTT---TGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTC---AAT--T-TT--TTTCCCTAAC--TG--TTAA-A--GAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATATGT-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTG-GAAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAA-TAATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAATTCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACATTCTT-ATTATAGAGCGC-ACCGC-GTTTA-T-G-ATTTTCT-GT-AAAC-ACG-TG-TACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGA-ATGA----------------TTTT-T--NCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAAGGTTT--AACTCACAACA-CAATA-G-TCAGTG
Reference ( family-533 ) : CTTTTGAAAAAAAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAGTTTTTTTTGGTTTTTTTT-TTT-TTT-TTTTGTTTTTGNTTTT-ATTTT--------ATTTATTA---T--AT--TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TGT-AGTT--AATTTT--GAAA-AGTGTTT-T-A-TTT-A-TGTTTAAATG-GTATATAAT--ACAGAGG-CGG----TAGGACTTGATTTGA--TGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTC---AAT--T-TT--TTTCCCTAAC--TG--TTAA-A--GAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATATGT-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTG-GAAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAA-TAATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAATTCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACATTCTT-ATTATAGAGCGC-ACCGC-GTTTA-T-G-ATTTTCT-GT-AAAC-ACG-TG-TACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGA-ATGA----------------TTTT-T--NCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAAGGTTT--AACTCACAACA-CAATA-G-TCAGTG
gi|1 : CTTTTGAAAAACAGCTTT-AG-AGAG-T-CATG-TTG--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAATTTTTTTTGGGTTTTTTTGTTT-TTTGTTTTGTTTTTGGTTTT-ATTTT--------ATTTATTA---TTCAT--TCATAA---TTTCT-CTTTAAATTAATAAA-TAAAAA--TTAATTATA--AAGAA--TATGA-AATGATCA-GCAGTC-G--AG-C---A--GTTCAA-G-G-TGT-AGCT--AATTTT--GAAATAGTGTTT-T-AGTTT-ACTGTTTAAATG-GTATATAATC-ACAGAGGACTG----TAGGACTTGATTTGAAGGGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAT------TCACAG-AAAG-T--GTATAGTCTA-AAATCG---C-C--TAACTAGC-TGCTGATGGTTT---CTGAAAT-TG-------TG-T--GATT---AACCTAAAGA-AAT-----C-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CTG-T----AGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCTGCGTTC---AAA--T-TT--TTTCCCTACC--TG--TTAATA--GAAG----TGT-G--TGT-AT-GT---GCGCTGACA----AAAACTTCT-TG-TGGACG--CGGG--CCCACAG-A-CA-------GG-CCAAA-AACC-AATATGT-TCTCC---TCA-C--TAAAG-TG----GCAA-G-GG--GAGG-AGTCA---TTATACAACCA-AGTCTG-GAAAGC--ATGAAATAATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AATTTTCCTCGTG-----TA-A----A-GTACTTATCGTT--TCCATTGTACAAATCA-TC-T-T-----T-ATAACGTCTTTTTA--CGACATACCTTTGCATACA-GACC-CTTAAAA-TAATCT-AATG-CTATAAAGATGTTACCAGATTA-TAGAATTCTATGTGGGAAGTCTCACATAGCT-GTTACGCC-AACCTCTTACACACTCTT-ATTATAGAGCGC-ACCGC-GTTTA-T-G-ATTTTCT-GTAAAAC-ACG-TG-TA--CCGG-GTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGATATGA----------------TTTTAC--CCCAGGATTTCCACATCTACGCTATTGCGCATTGGAAGGTTT--AACTCACAACA-CAATACG-TCAGTG
gi|10 : A-AAAC-AATATGT--CTCC---CCA-C--TAAAG-TG----GAA--G-GG--GAGG-GA-CA---TTATA-AACCA-CGTTTG--AAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGCTA--TAT-AA-TTTCCTCGTG-----TA-AATTTATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCT
gi|11 : TT-AG-CTTGATGACGCGAC-T-CTTTATAGATT-AGA-CTGAGTCTGATAATAAGGTATTTT-T--TCCCGAA-TCCCA-ATCGAATC-A-T-----TTGGA--GTTT--AGC----AACAACAATA-G-TCAGTG
gi|12 : AGA-AATGTTATC-AGACATATACA---TCT-A-T-GAAA---TTCAATTTAACAGC--T-TCAATTA-CGG-TG---GGATTTTCAAG--CACA---TTA----CTCA-TTT-TTcgtttactgac
gi|13 : g---GCGCTGA-------AAACTTTG-TGATGGACAGATGGA--CCCAAAGGA-CA-------GG-CCAAA-AAAC----ATG--CCTCC---GCA-C--CAAAG-GG----G----G-GG--GGGg
gi|14 : AGG-CG-----TAGGACT-GATTTT---TGAA----GGGGGAGGG--C-AGACTTA-----AAACAAGAAAA------TCAAAG-AA
gi|15 : aCTTTTGAAAAAAATCTT--AC-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTA-TCTT------A
gi|16 : caagtttagAA-AAAC-AATGT----CTCC---CCA-C--CAAAG-TG----G----G-GG--GGGG-GGG
gi|18 : cAA-AAAC-AATATA--TCTCC---CCT-C--CAAAGTTG----G----G-GG--GGGG-GGGTA---TTggggggaacataa
gi|19 : AAT-AATATG--TCTCC---TCACC--CAAAG-GG----G----G-GG--GGGG-GGACA---TAATA-
gi|2 : CTTTTGAAAAAA-GCTT--AGGAGAG-T-CA-G-T-G--CA-G-TTTTAGA---TTATTTTTTTCATTATCTTGA-GA-GG-ACATGA--G--CTGTTAGTTTTTTTTTGTTTTTGTT-TTT-TT------G-----GATTTT-ATTTT--------ATTTATTA---T--AT---CATGA---TT-CT-CTTTAAATTAATAAAATAAAAAATC-AGT-ATA--A-GAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TGTTAGTC--A-TGTT--GAAA-AGTGTTT---A-TTT-A-TGTTAAAATG-GTATC--AT--ACAGAGG-CAG----TTAGACTTGATTTGA------------------GGGC-ACACTTA-----AAA----TAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAATCTGA------TG-T--GATT---ATCCTAAAGA-AATGTTTTC-A--------CAATTTCTTAAT-GAAT---T-CCATTAA-CAGCTT---C-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTT--A-CTCA-TTT-CT--G-GTTC---A----T-TT--TTCCCCTA-C--GGGGTTAA-A---AGG----TGT-G--TGT-AT-GN---NNNNNNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNC---------------G-CCAAA-AACC-AATATGT-TCTCC---CCA-C--TAAAG-TG----A----A-GG--GAGG-AGGCA---TTATA-AACCA-AGCTTT-GAAAGC--ATGAAA-AATACA-AATCATTAAATA--TTGTGTAAAGGG-ATATAT-AA-TTTCCTCGTGTAAAATA-A----ATGTATT-GTC--T--TTGATTGTA-AAA-CATTCTT-T-----TAAGAAAGTC-TTTTA--CGAAATTACTTTGCATACAGGACCTCTTAAAA-T-ATCT-AATGCCTAAAAAGATG-TACCCGATTATTAGAA-TATATGT-GGAAGTCTCACATAGCTAG-TACGCCAAAGCC-TTACACATTCCTAATTATAGAGCGC-ACCGC-GTTTA-T-GAATTTTCTAGT-AAAC-ACG-TG-TACCCCGGTGTTGAC-CTTGATGACGCGAC-T-TTTTA-A---TAAGA-ATGA----------------TTTT-T--ACCAGGA-TTCC--ATCTACGC-A-TGCGCATTTGAAGGCTTTAAACTCA-AACA--AATA-G-TCAGT
gi|20 : aaaataggAA-AAAC-AATATGT--CTCC---CCA-C--TAATG-TG----G----G-GG--GAtcagtgcagttgccggcagctg
gi|21 : AA-AAAC-AATACGT-G-TCC---CCA-C--CAAAG-TT----G----G-GG--GAGaacataatg
gi|22 : AA-AAAC-AATATGT--CTCC---CCA-C--CATAG-TG----G----G-GG--GAGacataat
gi|23 : AA-AAAC-AATATGT--CTCC---CCA-C--CAAAG-TG----G----G-GA--GAGacataat
gi|24 : AA-AAAC-AATATGT--CTCT---CCA-C--CAAAG-TG----G----G-GG--GAGacataat
gi|25 : A-AAAC-AATATTG-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAAG-acataa
gi|27 : AAC-AATATGT--CTCC---CCA-C--CAAAG-TG----G----G-GG--GAGacat
gi|29 : AA-AGAC-A-TATGT--CTCC---CCA-C--CAAAG-TG----G----G-GG--GGGacataa
gi|3 : TTTGAAAAAAAGCTTTTCG-AGAG-T-CC-G-T-GGGCAAG-T---AGAACTTTATTCTT-------T-TTGACGA-GGGA--TGGGTGGGCC--T---TCTTTTTATTTTTTTTT-TTTGTTT-TTTTGTTTTTGTTTTT-TTTTTTTTTTTTGTTTTATTAATTT--ATTATCATAAAATTTTCTCCTTTAAATTAAT--AATAAAGA--T--AT-ATA--AAG-A--T-TGAGAATGAT-AGGCA-TC-GGAGG-CACAA--GTTTAACG-G-T-T-AGTTTAAGTTTT--TGAA-AGTGTTTGTAA-TTTAA-TGTAT-ACTG-GTAAAT--T--A-ACAGG-CGGTAAATAGGGCTTCGTTTTT--TGAAAAGGGGGGAGGGGGGCAAGACTTACAAAGAAA----AAAAAATCTTTCACAGCACAG-TTGGTATAGT-TATAA--CGGCCCACCTTAGTTTGCACCCTGGTG-TTTTTCCTGAAAT-TGGGGGGGTTG-TTGAATTAAGAACCTAAAGA-AATGTTTTCAAGA-----CCAATTTTTCT-T-GAATGAATTCCATTAAAAAGCTTTCCC-ATTA--GG-TAGGGGGATTT--GAAATCA-AAT-TTACTC-CCCATTTT-CTTGGCGTTTTCGAAT--TATTTATTTTTCTAACTTTT--TTAA-AGCGAGGTTTTTGT-GGTTGTAAT-GTACCGCCCTGAC------AAACT--T-TG-TGGA-A--CGGACTCCCACAG-ACCACCGCATTGG-CCAA-------AACAT-T-TTTCC---CCA-CTACAAAG-TGGAAAG----G-GA--GAGGCGGGCATTTTTATA-AAACC-AGTT---GAAAGC--A
gi|30 : tttaaagcttaAA-AAAC-AATATG--TCTCC---CCA----CAAAG-TG----G----G-GG--GA
gi|4 : AAAAAAAGCTT---G-AGAGAT-CA-G-G-T--CA-G-T---AGA---T-AT-CTT------AT-TTGA-G--GG-A--TGG-TG--TT--TAGT-------GGGTTTTTTT-TTT-TTT-TTTTTTTTTTGTTTTTAATTTT--------ATTAGTTA---T--A---TCATAA---TTTCT-CTTTAAATTAATAAAATTAAAA--A-AAT-ATA--AAGAATGT-TAA-ACTGAT-A-GCA-TC-G--AG-C---AGCGTTCAA---G-TGT-GG-T--AATTTT--GAAATAGTGTTT-T-A-TTT-A-TG-TTAAATG-CTATATA----CCATAGG-CG------AGGACT--ATTT----TGAA----AGGGTGGCGGGC-ACACTT------AAA----AAAA------TCAC-G-AAAGATT-ACCTA-TTTA-AA--CGC--CAC--TAA-TAGC-TGCTGATG--TT---CTGAAAT---G------TGTT--GATT---AACCTAAAGAGAATGTTTC---GA-----ACAATTTC-TA-TGGAA-----TCCATT-AACAGC--T-TC-ATT--CGGTT----GGATTT--G-A--CTCAA--TTA--CTTTCA-T----TCTGCGTTC---AAT--T-TT--TTTCCCTTAC--TG--TTAA-A--GAGG----TGTCG--TGT-AT-GN---NNNNNNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNNNN-N-C--------------AA-AAACAAATATG--TCTCC---CCA-C--T-AAG-TG----G----A-AGTTGA-G-GGACA---TTATA-AACTA-AGTCTG-AAAGCC--ATGAAA-AAT-TCAAATCATTAAGTAGTTTGTGTAAATGGTA--TATAAA-TTTCCTCGAG-----TATA----ATGTATTGGTC--T--TT-ATTGTA-AAA-CATTCTTAT-----T-ATAAAGTCTTTTAAAGCGAAA-----------ACA-GATC-CCTAA
gi|5 : ttaattagctctaaaattatgaAAAAG-AATGTTTTC-AGA------CA-TTTCTTA-T-GTAT---T-CCATTAA-CAGTTT-----ATTATCGG-T----GGTATT--GAA--CACAATGTTA--C--TCA-TTTACATCGCGTTC---AATGTT-TT--TTTCGCTAAC--TG--TTAAGA--GTGA----TGT----TGT-ATTGT---GCGCTGACGTTTTATAACTTCTATT-TAGAC---TGGA--CCCACAG-A-CA-------GGTCCAAGTAAAC-AACATGTCTCTCCAACTCG-C--TAAAG--G----GAACAG-GG--GAGG-GGGCC---ATATA-AACCATAGTTTTTGAAAGCTGATGAAA-A-TATC-AATCATTAAATA-TTTG-G-AAAGTGTAT-AAT-AC-TTTCCTCGTG-----TA-A----ATGTATGTGTC--TGTTTGATTGTA-AAA-CA-TCTT-T-------ATAAAGTC-TTTTA--CGAAATACTTTTGCATACA-GACC-CTTAAAATTAATCT-AATG-CTAAAAAGATGATACCCGATTA--AGAATTCTATGT-GGAAGTTCCACATAGCT-G-TACCCC-AAGCCGTTACACATAATT-AT--TAGAATGC-ACCGCGGTTTT-T-G-ATTTTCT-GT-AAACTACGTTGTTACCCCTGTGTT-ACGCTTGATGACGCGAC-TATTATATA---T-AGA-ATGA----------------TTTT-T--ACCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGA
gi|6 : CTTTTGAAAA-AAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTA-TCTT------AT-TTGA-GAGGG-A--TGG-TG--CT--TAGTGTT-----GTTTTTTTT-TTT-TTA-TTTT-------ATTTT-A-TTT--------ATTCATTA----------TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-GAG-TGT-AA-T--AA-TTT--GAAA-AGTGGTT-T-A-TTT-A-T-TTTAAATG-GTAT---AT--ACAGAGG-C-G----TAGGAC-TGATTT----TGAA----GGGGGGGGGGGC-ACACTT-------AA----AAAA------TCACAG-AAAG--T-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-T-G------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AG------ACAA-TTCTTA-T-GAA----TTCCATT-AACAGC--T-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA----CTCA-TTT-CT--GCGTTC---AA-----TT--TTTCCCT-AC--TG--TTAA-A--GAGG----TGT-G--TGA-AT-G
gi|7 : tttagA-AAAC-AATATGT--CTCC---CCA-C--TAAAG-TG----G----AAGG--GAAG-GGGCA---TTATA-AACCA-AGTTTG--AAAGC--ATGAA---------------CAAATA-TTTGTGTAAAGG-TAT--AT-AA-TTTCCTTGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAC-CA-TCTT-T-----T-ATAAAAGTATTTTA--CGAGATAC------------------TTAAAA-TAATCTGAATG-CTAAAA-GATG-TACC-GAT-A-TAGAAT-CTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACAT-CTA-ATTATAGAGCGCCACCGC-TGTTA-TTG-ATTTTCT-GT-AAAC-ACG-TG-TACCCCGGTGTT-AC-CTTGATGATGCGACTT-TTATATA---T-AG--ATGA----------------TTTT-TTACCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAGG--TT--AACTCACA--A-CAATA-GTTCAGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|8 : TTTTGAAAAAAAGCTT--AG-AGAG-TCCA-GCT-G--TA-GTT---AGA---TTA-TCTT------AA-TTGA-GA-GG-G--AGG-CGTACT--TA-------TTGTTTTTTTTT-TTT-TTT-TATGGTATTTG---TT-A--TT--------ATTTATTA----------TC-TAG---ATTCT-CTTTAAATTAA-AAAATAAAAA--T-AAT-ATATTAAGAA--T-TGA-AAT-AT-A-GCA-TCGG--AGCC---A--GTTCAA-G-GTTGT-AGTT--AATTTTTGAAAA-AGTGTTT-T-A-TTT-A-TTGTTAAATGCGT---TAATTAACAGA-G-CGC----TAGGGACTGATTTT---CGAA----GGGGGGGGGGGC------TA-----AAA----GAccggtgggcactga
gi|9 : tttagct--T--TTGATTGTA-AAA-CA-TCTT-TAATTTT-ATAAAGTCTATT-A--CCAAATAC-TTTGCATACA-GACC-CTTAAAA-TAATCT-AACG-CTAAAAAGATG-AACCCGATTA-TAGAA-TCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACA----------------GC-ACCGC-GTTTATT-G-ATGTTCC-GT-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|26 ): GATGTAGTGATCAAGAGGTTTTCATAATGTAATATCCGT
Unaligned ( gi|28 ): ATGTTGAGGATGTGTTGAATCGAAGATATCAGTAACT
Unaligned ( gi|31 ): TTTCTAAAAAAAAAAAAATGCATTAAATGTCT
Alignments
lowQualScore : 111 111 111 1 111111 222222222222222 11 22222222 4444444444 111 1111 111111 111 1111 1 111 3333333 222222 111 1111 11111 111111 1111 111111 1111 11 222 11 111 4444444444 11 111 2222222 1111 2222 1111 2222 11 2222222222 1111 1111 1111 111 2222222 1111 222222222222 222 1111 111 111 11111 1111 1 2222222 1111 1 1 11 222222 1 1 1 111 5555555555555555 11111 11 11 1 1
lowQualScore : 555 5 5 5 5 555 77 5 5 000 000 2 666666 6 6 6 9999 88 555555555555555 1 6 6 00 999 7 999 44444444 3333333333 111 6 3333 6 99 99 6 6 6 6 6 6 99 6 111111 111 6 6 2222 1 99 3 222 6 6 6 55 6 1111111 5 333333 000 5 1111 55555 5 0 999999 2222 999999 6 7777 3 8 11 222 0 11 3 8 88 444 0000000000 8 11 444 5 5 0000000 66 0 5 5 8888 5 8 5 4444 5 5 5 7777 77 77 77 1111 5 5 99 0000000000 99 66 99 99 3333 4444 4444 6 6 111 7777777 8888 6 6666 99 0 999999999999 6 2 2 111 333 2 22 2 4444 0000 2 22 3 0 777 5 5 333 77 6 3 3 6 6 2 777 6 6 66666 6 4444 6 77 77 0 5 5 1 6 2222222 3 1111 3 6 6 88 8 8 0 6 5 0 88 11 8 8 8 8 5 222222 66 8 8 8 8 8 8 8 0 0 0 2 3 8 8 8 8 1 0 444 8 88 3333333333333333 44444 8 88 8 8 7 33 33 3 8 3 22 0 0
lowQualScore : ... . . . . ... .. . . ... ... . ...... . . . .... .. ............... . . . .. ... . ... ........ .......... ... . .... . .. .. . . . . . . .. . ...... ... . . .... . .. . ... . . . .. . ....... . ...... ... . .... ..... . . ...... .... ...... . .... . . .. ... . .. . . .. ... .......... . .. ... . . ....... .. . . . .... . . . .... . . . .... .. .. .. .... . . .. .......... .. .. .. .. .... .... .... . . ... ....... .... . .... .. . ............ . . . ... ... . .. . .... .... . .. . . ... . . ... .. . . . . . . ... . . ..... . .... . .. .. . . . . . ....... . .... . . . .. . . . . . . .. .. . . . . . ...... .. . . . . . . . . . . . . . . . . . . ... . .. ................ ..... . .. . . . .. .. . . . .. . .
lowQualScore : 000 7 7 7 7 999 99 7 7 000 000 0 444444 7 7 7 3333 33 888888888888888 0 7 7 22 000 5 333 22222222 5555555555 777 7 7777 7 22 22 7 7 7 7 7 7 22 7 888888 777 7 7 5555 7 22 3 555 7 7 7 77 7 5555555 7 000000 999 0 4444 11111 7 7 333333 1111 222222 7 6666 2 0 00 000 8 00 2 0 88 000 0000000000 0 00 000 7 7 6666666 44 1 7 7 7777 0 7 0 0000 7 7 7 9999 99 99 11 4444 7 7 88 2222222222 22 77 22 22 5555 2222 2222 7 7 777 3333333 0000 7 2222 22 8 000000000000 7 2 0 444 555 0 88 0 2222 5555 0 88 6 7 888 0 7 000 99 7 2 2 7 7 5 555 7 7 77777 7 2222 7 99 99 7 7 7 4 7 5555555 5 8888 5 7 7 88 0 0 8 0 0 8 88 44 0 0 0 0 0 444444 22 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 4 8 000 0 88 0000000000000000 00000 0 88 0 0 0 22 88 2 8 2 55 0 0
consensus : CTTTTGAAAAAAAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAGTTTTTTTTGGTTTTTTTT-TTT-TTT-TTTTGTTTTTGNTTTT-ATTTT--------ATTTATTA---T--AT--TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TGT-AGTT--AATTTT--GAAA-AGTGTTT-T-A-TTT-A-TGTTTAAATG-GTATATAAT--ACAGAGG-CGG----TAGGACTT-GATTTT---TGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTC---AAT--T-TT--TTTCCCTAAC--TG--TTAA-A--GAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATATGT-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTG-GAAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAAT-AATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAATTCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACATTCTT-ATTATAGAGCGC-ACCGCG-TTTA-T-G-ATTTTCT-GT-AAAC-ACGT-GT-ACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGA-ATGA----------------TTTT-T--NCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAAGGTTT--AACTCACAACA-CAATA-G-TCAGTG
Reference ( family-533 ) : CTTTTGAAAAAAAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAGTTTTTTTTGGTTTTTTTT-TTT-TTT-TTTTGTTTTTGNTTTT-ATTTT--------ATTTATTA---T--AT--TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TGT-AGTT--AATTTT--GAAA-AGTGTTT-T-A-TTT-A-TGTTTAAATG-GTATATAAT--ACAGAGG-CGG----TAGGACTT-GATTTT---TGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTC---AAT--T-TT--TTTCCCTAAC--TG--TTAA-A--GAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATATGT-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTG-GAAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAAT-AATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAATTCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACATTCTT-ATTATAGAGCGC-ACCGCG-TTTA-T-G-ATTTTCT-GT-AAAC-ACGT-GT-ACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGA-ATGA----------------TTTT-T--NCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAAGGTTT--AACTCACAACA-CAATA-G-TCAGTG
gi|1 : CTTTTGAAAAACAGCTTT-AG-AGAG-T-CATG-TTG--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAATTTTTTTTGGGTTTTTTTGTTT-TTTGTTTTGTTTTTGGTTTT-ATTTT--------ATTTATTA---TTCAT--TCATAA---TTTCT-CTTTAAATTAATAAA-TAAAAA--TTAATTATA--AAGAA--TATGA-AATGATCA-GCAGTC-G--AG-C---A--GTTCAA-G-G-TGT-AGCT--AATTTT--GAAATAGTGTTT-T-AGTTT-ACTGTTTAAATG-GTATATAATC-ACAGAGGACTG----TAGGACTT-GATTTGAAGGGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAT------TCACAG-AAAG-T--GTATAGTCTA-AAATCG---C-C--TAACTAGC-TGCTGATGGTTT---CTGAAAT-TG-------TG-T--GATT---AACCTAAAGA-AAT-----C-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CTG-T----AGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCTGCGTTC---AAA--T-TT--TTTCCCTACC--TG--TTAATA--GAAG----TGT-G--TGT-AT-GT---GCGCTGACA----AAAACTTCT-TG-TGGACG--CGGG--CCCACAG-A-CA-------GG-CCAAA-AACC-AATATGT-TCTCC---TCA-C--TAAAG-TG----GCAA-G-GG--GAGG-AGTCA---TTATACAACCA-AGTCTG-GAAAGC--ATGAAATAATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AATTTTCCTCGTG-----TA-A----A-GTACTTATCGTT--TCCATTGTACAAATCA-TC-T-T-----T-ATAACGTCTTTTTA--CGACATACCTTTGCATACA-GACC-CTTAAAAT-AATCT-AATG-CTATAAAGATGTTACCAGATTA-TAGAATTCTATGTGGGAAGTCTCACATAGCT-GTTACGCC-AACCTCTTACACACTCTT-ATTATAGAGCGC-ACCGCG-TTTA-T-G-ATTTTCT-GTAAAAC-ACGT-GT-A--CCGG-GTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGATATGA----------------TTTTAC--CCCAGGATTTCCACATCTACGCTATTGCGCATTGGAAGGTTT--AACTCACAACA-CAATACG-TCAGTG
gi|10 : A-AAAC-AATATGT--CTCC---CCA-C--TAAAG-TG----GAA--G-GG--GAGG-GA-CA---TTATA-AACCA-CGTTTG--AAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGCTA--TAT-AA-TTTCCTCGTG-----TA-AATTTATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCT
gi|11 : TT-AG-CTTGATGACGCGAC-T-CTTTATAGATT-AGA-CTGAGTCTGATAATAAGGTATTTT-T--TCCCGAA-TCCCA-ATCGAATC-A-T-----TTGGA--GTTT--AGC----AACAACAATA-G-TCAGTG
gi|12 : AGA-AATGTTATC-AGACATATACA---TCT-A-T-GAAA---TTCAATTTAACAGC--T-TCAATTA-CGG-TG---GGATTTTCAAG--CACA---TTA----CTCA-TTT-TTcgtttactgac
gi|13 : g---GCGCTGA-------AAACTTTG-TGATGGACAGATGGA--CCCAAAGGA-CA-------GG-CCAAA-AAAC----ATG--CCTCC---GCA-C--CAAAG-GG----G----G-GG--GGGg
gi|14 : AGG-CG-----TAGGACT--GATTTT---TGAA------GGGGGAGGGC-AGACTTA-----AAACAAGAAAA------TCAAAG-AA
gi|15 : aCTTTTGAAAAAAATCTT--AC-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTA-TCTT------A
gi|16 : caagtttagAA-AAAC-AATGT----CTCC---CCA-C--CAAAG-TG----G----G-GG--GGGG-GGG
gi|18 : cAA-AAAC-AATATA--TCTCC---CCT-C--CAAAGTTG----G----G-GG--GGGG-GGGTA---TTggggggaacataa
gi|19 : AAT-AATATG--TCTCC---TCACC--CAAAG-GG----G----G-GG--GGGG-GGACA---TAATA-
gi|2 : CTTTTGAAAAAA-GCTT--AGGAGAG-T-CA-G-T-G--CA-G-TTTTAGA---TTATTTTTTTCATTATCTTGA-GA-GG-ACATGA--G--CTGTTAGTTTTTTTTTGTTTTTGTT-TTT-TT------G-----GATTTT-ATTTT--------ATTTATTA---T--AT---CATGA---TT-CT-CTTTAAATTAATAAAATAAAAAATC-AGT-ATA--A-GAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TGTTAGTC--A-TGTT--GAAA-AGTGTTT---A-TTT-A-TGTTAAAATG-GTATC--AT--ACAGAGG-CAG----TTAGACTT-GATTT------------------GAGGGC-ACACTTA-----AAA----TAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAATCTGA------TG-T--GATT---ATCCTAAAGA-AATGTTTTC-A--------CAATTTCTTAAT-GAAT---T-CCATTAA-CAGCTT---C-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTT--A-CTCA-TTT-CT--G-GTTC---A----T-TT--TTCCCCTA-C--GGGGTTAA-A---AGG----TGT-G--TGT-AT-GN---NNNNNNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNC---------------G-CCAAA-AACC-AATATGT-TCTCC---CCA-C--TAAAG-TG----A----A-GG--GAGG-AGGCA---TTATA-AACCA-AGCTTT-GAAAGC--ATGAAA-AATACA-AATCATTAAATA--TTGTGTAAAGGG-ATATAT-AA-TTTCCTCGTGTAAAATA-A----ATGTATT-GTC--T--TTGATTGTA-AAA-CATTCTT-T-----TAAGAAAGTC-TTTTA--CGAAATTACTTTGCATACAGGACCTCTTAAAAT--ATCT-AATGCCTAAAAAGATG-TACCCGATTATTAGAA-TATATGT-GGAAGTCTCACATAGCTAG-TACGCCAAAGCC-TTACACATTCCTAATTATAGAGCGC-ACCGCG-TTTA-T-GAATTTTCTAGT-AAAC-ACGT-GT-ACCCCGGTGTTGAC-CTTGATGACGCGAC-T-TTTTA-A---TAAGA-ATGA----------------TTTT-T--ACCAGGA-TTCC--ATCTACGC-A-TGCGCATTTGAAGGCTTTAAACTCA-AACA--AATA-G-TCAGT
gi|20 : aaaataggAA-AAAC-AATATGT--CTCC---CCA-C--TAATG-TG----G----G-GG--GAtcagtgcagttgccggcagctg
gi|21 : AA-AAAC-AATACGT-G-TCC---CCA-C--CAAAG-TT----G----G-GG--GAGaacataatg
gi|22 : AA-AAAC-AATATGT--CTCC---CCA-C--CATAG-TG----G----G-GG--GAGacataat
gi|23 : AA-AAAC-AATATGT--CTCC---CCA-C--CAAAG-TG----G----G-GA--GAGacataat
gi|24 : AA-AAAC-AATATGT--CTCT---CCA-C--CAAAG-TG----G----G-GG--GAGacataat
gi|25 : A-AAAC-AATATTG-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAAG-acataa
gi|27 : AAC-AATATGT--CTCC---CCA-C--CAAAG-TG----G----G-GG--GAGacat
gi|29 : AA-AGAC-A-TATGT--CTCC---CCA-C--CAAAG-TG----G----G-GG--GGGacataa
gi|3 : TTTGAAAAAAAGCTTTTCG-AGAG-T-CC-G-T-GGGCAAG-T---AGAACTTTATTCTT-------T-TTGACGA-GGGA--TGGGTGGGCC--T---TCTTTTTATTTTTTTTT-TTTGTTT-TTTTGTTTTTGTTTTT-TTTTTTTTTTTTGTTTTATTAATTT--ATTATCATAAAATTTTCTCCTTTAAATTAAT--AATAAAGA--T--AT-ATA--AAG-A--T-TGAGAATGAT-AGGCA-TC-GGAGG-CACAA--GTTTAACG-G-T-T-AGTTTAAGTTTT--TGAA-AGTGTTTGTAA-TTTAA-TGTAT-ACTG-GTAAAT--T--A-ACAGG-CGGTAAATAGGGCTTCGTTTTT---TGAAAAGGGGGGAGGGGGGCAAGACTTACAAAGAAA----AAAAAATCTTTCACAGCACAG-TTGGTATAGT-TATAA--CGGCCCACCTTAGTTTGCACCCTGGTG-TTTTTCCTGAAAT-TGGGGGGGTTG-TTGAATTAAGAACCTAAAGA-AATGTTTTCAAGA-----CCAATTTTTCT-T-GAATGAATTCCATTAAAAAGCTTTCCC-ATTA--GG-TAGGGGGATTT--GAAATCA-AAT-TTACTC-CCCATTTT-CTTGGCGTTTTCGAAT--TATTTATTTTTCTAACTTTT--TTAA-AGCGAGGTTTTTGT-GGTTGTAAT-GTACCGCCCTGAC------AAACT--T-TG-TGGA-A--CGGACTCCCACAG-ACCACCGCATTGG-CCAA-------AACAT-T-TTTCC---CCA-CTACAAAG-TGGAAAG----G-GA--GAGGCGGGCATTTTTATA-AAACC-AGTT---GAAAGC--A
gi|30 : tttaaagcttaAA-AAAC-AATATG--TCTCC---CCA----CAAAG-TG----G----G-GG--GA
gi|4 : AAAAAAAGCTT---G-AGAGAT-CA-G-G-T--CA-G-T---AGA---T-AT-CTT------AT-TTGA-G--GG-A--TGG-TG--TT--TAGT-------GGGTTTTTTT-TTT-TTT-TTTTTTTTTTGTTTTTAATTTT--------ATTAGTTA---T--A---TCATAA---TTTCT-CTTTAAATTAATAAAATTAAAA--A-AAT-ATA--AAGAATGT-TAA-ACTGAT-A-GCA-TC-G--AG-C---AGCGTTCAA---G-TGT-GG-T--AATTTT--GAAATAGTGTTT-T-A-TTT-A-TG-TTAAATG-CTATATA----CCATAGG-CG------AGGACT---A-TTT---TGAA----AGGGTGGCGGGC-ACACTT------AAA----AAAA------TCAC-G-AAAGATT-ACCTA-TTTA-AA--CGC--CAC--TAA-TAGC-TGCTGATG--TT---CTGAAAT---G------TGTT--GATT---AACCTAAAGAGAATGTTTC---GA-----ACAATTTC-TA-TGGAA-----TCCATT-AACAGC--T-TC-ATT--CGGTT----GGATTT--G-A--CTCAA--TTA--CTTTCA-T----TCTGCGTTC---AAT--T-TT--TTTCCCTTAC--TG--TTAA-A--GAGG----TGTCG--TGT-AT-GN---NNNNNNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNNNN-N-C--------------AA-AAACAAATATG--TCTCC---CCA-C--T-AAG-TG----G----A-AGTTGA-G-GGACA---TTATA-AACTA-AGTCTG-AAAGCC--ATGAAA-AAT-TCAAATCATTAAGTAGTTTGTGTAAATGGTA--TATAAA-TTTCCTCGAG-----TATA----ATGTATTGGTC--T--TT-ATTGTA-AAA-CATTCTTAT-----T-ATAAAGTCTTTTAAAGCGAAA-----------ACA-GATC-CCTAA
gi|5 : ttaattagctctaaaattatgaAAAAG-AATGTTTTC-AGA------CA-TTTCTTA-T-GTAT---T-CCATTAA-CAGTTT-----ATTATCGG-T----GGTATT--GAA--CACAATGTTA--C--TCA-TTTACATCGCGTTC---AATGTT-TT--TTTCGCTAAC--TG--TTAAGA--GTGA----TGT----TGT-ATTGT---GCGCTGACGTTTTATAACTTCTATT-TAGAC---TGGA--CCCACAG-A-CA-------GGTCCAAGTAAAC-AACATGTCTCTCCAACTCG-C--TAAAG--G----GAACAG-GG--GAGG-GGGCC---ATATA-AACCATAGTTTTTGAAAGCTGATGAAA-A-TATC-AATCATTAAATA-TTTG-G-AAAGTGTAT-AAT-AC-TTTCCTCGTG-----TA-A----ATGTATGTGTC--TGTTTGATTGTA-AAA-CA-TCTT-T-------ATAAAGTCTTTT-A--CGAAATACTTTTGCATACA-GACC-CTTAAAATTAATCT-AATG-CTAAAAAGATGATACCCGATTA--AGAATTCTATGT-GGAAGTTCCACATAGCT-G-TACCCC-AAGCCGTTACACATAATT-ATTA--GAATGC-ACCGCGGTTTT-T-G-ATTTTCT-GT-AAACTACGTTGTTACCCCTGTGTT-ACGCTTGATGACGCGAC-TATTATATA---T-AGA-ATGA----------------TTTT-T--ACCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGA
gi|6 : CTTTTGAAAA-AAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTA-TCTT------AT-TTGA-GAGGG-A--TGG-TG--CT--TAGTGTT-----GTTTTTTTT-TTT-TTA-TTTT-------ATTTT-A-TTT--------ATTCATTA----------TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-GAG-TGT-AA-T--AA-TTT--GAAA-AGTGGTT-T-A-TTT-A-T-TTTAAATG-GTAT---AT--ACAGAGG-C-G----TAGGAC-T-GA-TTT---TGAA----GGGGGGGGGGGC-ACACTT-------AA----AAAA------TCACAG-AAAG--T-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-T-G------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AG------ACAA-TTCTTA-T-GAA----TTCCATT-AACAGC--T-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA----CTCA-TTT-CT--GCGTTC---AA-----TT--TTTCCCT-AC--TG--TTAA-A--GAGG----TGT-G--TGA-AT-G
gi|7 : tttagA-AAAC-AATATGT--CTCC---CCA-C--TAAAG-TG----G----AAGG--GAAG-GGGCA---TTATA-AACCA-AGTTTG--AAAGC--ATGAA---------------CAAATA-TTTGTGTAAAGG-TAT--AT-AA-TTTCCTTGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAC-CA-TCTT-T-----T-ATAAAAGTATTTTA--CGAGATAC------------------TTAAAAT-AATCTGAATG-CTAAAA-GATG-TACC-GAT-A-TAGAAT-CTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACAT-CTA-ATTATAGAGCGCCACCGCT-GTTA-TTG-ATTTTCT-GT-AAAC-ACGT-GT-ACCCCGGTGTT-AC-CTTGATGATGCGACTT-TTATATA---T-AG--ATGA----------------TTTT-TTACCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAGG--TT--AACTCACA--A-CAATA-GTTCAGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|8 : TTTTGAAAAAAAGCTT--AG-AGAG-TCCA-GCT-G--TA-GTT---AGA---TTA-TCTT------AA-TTGA-GA-GG-G--AGG-CGTACT--TA-------TTGTTTTTTTTT-TTT-TTT-TATGGTATTTG---TT-A--TT--------ATTTATTA----------TC-TAG---ATTCT-CTTTAAATTAA-AAAATAAAAA--T-AAT-ATATTAAGAA--T-TGA-AAT-AT-A-GCA-TCGG--AGCC---A--GTTCAA-G-GTTGT-AGTT--AATTTTTGAAAA-AGTGTTT-T-A-TTT-A-TTGTTAAATGCGT---TAATTAACAGA-G-CGC----TAGGGACT-GATTTT---CGAA----GGGGGGGGGGGC------TA-----AAA----GAccggtgggcactga
gi|9 : tttagct--T--TTGATTGTA-AAA-CA-TCTT-TAATTTT-ATAAAGTCTATT-A--CCAAATAC-TTTGCATACA-GACC-CTTAAAAT-AATCT-AACG-CTAAAAAGATG-AACCCGATTA-TAGAA-TCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACA----------------GC-ACCGCG-TTTATT-G-ATGTTCC-GT-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|26 ): GATGTAGTGATCAAGAGGTTTTCATAATGTAATATCCGT
Unaligned ( gi|28 ): ATGTTGAGGATGTGTTGAATCGAAGATATCAGTAACT
Unaligned ( gi|31 ): TTTCTAAAAAAAAAAAAATGCATTAAATGTCT
Alignments
lowQualScore : 111 111 111 1 111111 222222222222222 11 22222222 4444444444 111 1111 111111 111 1111 1 111 3333333 222222 111 1111 11111 111111 1111 111111 1111 11 222 11 111 4444444444 11 111 2222222 1111 2222 1111 2222 11 2222222222 1111 1111 1111 111 2222222 1111 222222222222 222 1111 111 111 11111 1111 1 2222222 1111 1 1 11 222222 1 1 1 111 5555555555555555 11111 11 11 1 1
lowQualScore : 555 5 5 5 5 555 77 5 5 000 000 2 666666 6 6 6 9999 88 555555555555555 1 6 6 00 999 7 999 44444444 3333333333 111 6 3333 6 99 99 6 6 6 6 6 6 99 6 111111 111 6 6 2222 1 99 3 222 6 6 6 55 6 1111111 5 333333 000 5 1111 55555 5 0 999999 2222 999999 6 7777 3 8 11 222 0 11 3 8 88 444 0000000000 8 11 444 5 5 0000000 66 0 5 5 8888 5 8 5 4444 5 5 5 7777 77 77 77 1111 5 5 99 0000000000 99 66 99 99 3333 4444 4444 6 6 111 7777777 8888 6 6666 99 0 999999999999 6 2 2 111 333 2 22 2 4444 0000 2 22 3 0 777 5 5 333 77 6 3 3 6 6 2 777 6 6 66666 6 4444 6 77 77 0 5 5 1 6 2222222 3 1111 3 6 6 88 8 8 0 6 5 0 88 11 8 8 8 8 5 222222 66 8 8 8 8 8 8 8 0 0 0 2 3 8 8 8 8 1 0 444 8 88 3333333333333333 44444 8 88 8 8 7 33 33 3 8 3 22 0 0
lowQualScore : ... . . . . ... .. . . ... ... . ...... . . . .... .. ............... . . . .. ... . ... ........ .......... ... . .... . .. .. . . . . . . .. . ...... ... . . .... . .. . ... . . . .. . ....... . ...... ... . .... ..... . . ...... .... ...... . .... . . .. ... . .. . . .. ... .......... . .. ... . . ....... .. . . . .... . . . .... . . . .... .. .. .. .... . . .. .......... .. .. .. .. .... .... .... . . ... ....... .... . .... .. . ............ . . . ... ... . .. . .... .... . .. . . ... . . ... .. . . . . . . ... . . ..... . .... . .. .. . . . . . ....... . .... . . . .. . . . . . . .. .. . . . . . ...... .. . . . . . . . . . . . . . . . . . . ... . .. ................ ..... . .. . . . .. .. . . . .. . .
lowQualScore : 000 7 7 7 7 999 99 7 7 000 000 0 444444 7 7 7 3333 33 888888888888888 0 7 7 22 000 5 333 22222222 5555555555 777 7 7777 7 22 22 7 7 7 7 7 7 22 7 888888 777 7 7 5555 7 22 3 555 7 7 7 77 7 5555555 7 000000 999 0 4444 11111 7 7 333333 1111 222222 7 6666 2 0 00 000 8 00 2 0 88 000 0000000000 0 00 000 7 7 6666666 44 1 7 7 7777 0 7 0 0000 7 7 7 9999 99 99 11 4444 7 7 88 2222222222 22 77 22 22 5555 2222 2222 7 7 777 3333333 0000 7 2222 22 8 000000000000 7 2 0 444 555 0 88 0 2222 5555 0 88 6 7 888 0 7 000 99 7 2 2 7 7 5 555 7 7 77777 7 2222 7 99 99 7 7 7 4 7 5555555 5 8888 5 7 7 88 0 0 8 0 0 8 88 44 0 0 0 0 0 444444 22 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 4 8 000 0 88 0000000000000000 00000 0 88 0 0 0 22 88 2 8 2 55 0 0
consensus : CTTTTGAAAAAAAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAGTTTTTTTTGGTTTTTTTT-TTT-TTT-TTTTGTTTTTGNTTTT-ATTTT--------ATTTATTA---T--AT--TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TGT-AGTT--AATTTT--GAAA-AGTGTTT-T-A-TTT-A-TGTTTAAATG-GTATATAAT--ACAGAGG-CGG----TAGGACTT-GATTTT---TGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTC---AAT--T-TT--TTTCCCTAAC--TG--TTAA-A--GAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATATGT-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTG-GAAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAAT-AATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAATTCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACATTCTT-ATTATAGAGCGC-ACCGCG-TTTA-T-G-ATTTTCT-GT-AAAC-ACGT-GT-ACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGA-ATGA----------------TTTT-T--NCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAAGGTTT--AACTCACAACA-CAATA-G-TCAGTG
Reference ( family-533 ) : CTTTTGAAAAAAAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAGTTTTTTTTGGTTTTTTTT-TTT-TTT-TTTTGTTTTTGNTTTT-ATTTT--------ATTTATTA---T--AT--TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TGT-AGTT--AATTTT--GAAA-AGTGTTT-T-A-TTT-A-TGTTTAAATG-GTATATAAT--ACAGAGG-CGG----TAGGACTT-GATTTT---TGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTC---AAT--T-TT--TTTCCCTAAC--TG--TTAA-A--GAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATATGT-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTG-GAAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAAT-AATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAATTCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACATTCTT-ATTATAGAGCGC-ACCGCG-TTTA-T-G-ATTTTCT-GT-AAAC-ACGT-GT-ACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGA-ATGA----------------TTTT-T--NCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAAGGTTT--AACTCACAACA-CAATA-G-TCAGTG
gi|1 : CTTTTGAAAAACAGCTTT-AG-AGAG-T-CATG-TTG--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAATTTTTTTTGGGTTTTTTTGTTT-TTTGTTTTGTTTTTGGTTTT-ATTTT--------ATTTATTA---TTCAT--TCATAA---TTTCT-CTTTAAATTAATAAA-TAAAAA--TTAATTATA--AAGAA--TATGA-AATGATCA-GCAGTC-G--AG-C---A--GTTCAA-G-G-TGT-AGCT--AATTTT--GAAATAGTGTTT-T-AGTTT-ACTGTTTAAATG-GTATATAATC-ACAGAGGACTG----TAGGACTT-GATTTGAAGGGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAT------TCACAG-AAAG-T--GTATAGTCTA-AAATCG---C-C--TAACTAGC-TGCTGATGGTTT---CTGAAAT-TG-------TG-T--GATT---AACCTAAAGA-AAT-----C-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CTG-T----AGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCTGCGTTC---AAA--T-TT--TTTCCCTACC--TG--TTAATA--GAAG----TGT-G--TGT-AT-GT---GCGCTGACA----AAAACTTCT-TG-TGGACG--CGGG--CCCACAG-A-CA-------GG-CCAAA-AACC-AATATGT-TCTCC---TCA-C--TAAAG-TG----GCAA-G-GG--GAGG-AGTCA---TTATACAACCA-AGTCTG-GAAAGC--ATGAAATAATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AATTTTCCTCGTG-----TA-A----A-GTACTTATCGTT--TCCATTGTACAAATCA-TC-T-T-----T-ATAACGTCTTTTTA--CGACATACCTTTGCATACA-GACC-CTTAAAAT-AATCT-AATG-CTATAAAGATGTTACCAGATTA-TAGAATTCTATGTGGGAAGTCTCACATAGCT-GTTACGCC-AACCTCTTACACACTCTT-ATTATAGAGCGC-ACCGCG-TTTA-T-G-ATTTTCT-GTAAAAC-ACGT-GT-A--CCGG-GTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGATATGA----------------TTTTAC--CCCAGGATTTCCACATCTACGCTATTGCGCATTGGAAGGTTT--AACTCACAACA-CAATACG-TCAGTG
gi|10 : A-AAAC-AATATGT--CTCC---CCA-C--TAAAG-TG----GAA--G-GG--GAGG-GA-CA---TTATA-AACCA-CGTTTG--AAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGCTA--TAT-AA-TTTCCTCGTG-----TA-AATTTATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCT
gi|11 : TT-AG-CTTGATGACGCGAC-T-CTTTATAGATT-AGA-CTGAGTCTGATAATAAGGTATTTT-T--TCCCGAA-TCCCA-ATCGAATC-A-T-----TTGGA--GTTT--AGC----AACAACAATA-G-TCAGTG
gi|12 : AGA-AATGTTATC-AGACATATACA---TCT-A-T-GAAA---TTCAATTTAACAGC--T-TCAATTA-CGG-TG---GGATTTTCAAG--CACA---TTA----CTCA-TTT-TTcgtttactgac
gi|13 : g---GCGCTGA-------AAACTTTG-TGATGGACAGATGGA--CCCAAAGGA-CA-------GG-CCAAA-AAAC----ATG--CCTCC---GCA-C--CAAAG-GG----G----G-GG--GGGg
gi|14 : AGG-CG-----TAGGACT--GATTTT---TGAA------GGGGGAGGGC-AGACTTA-----AAACAAGAAAA------TCAAAG-AA
gi|15 : aCTTTTGAAAAAAATCTT--AC-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTA-TCTT------A
gi|16 : caagtttagAA-AAAC-AATGT----CTCC---CCA-C--CAAAG-TG----G----G-GG--GGGG-GGG
gi|18 : cAA-AAAC-AATATA--TCTCC---CCT-C--CAAAGTTG----G----G-GG--GGGG-GGGTA---TTggggggaacataa
gi|19 : AAT-AATATG--TCTCC---TCACC--CAAAG-GG----G----G-GG--GGGG-GGACA---TAATA-
gi|2 : CTTTTGAAAAAA-GCTT--AGGAGAG-T-CA-G-T-G--CA-G-TTTTAGA---TTATTTTTTTCATTATCTTGA-GA-GG-ACATGA--G--CTGTTAGTTTTTTTTTGTTTTTGTT-TTT-TT------G-----GATTTT-ATTTT--------ATTTATTA---T--AT---CATGA---TT-CT-CTTTAAATTAATAAAATAAAAAATC-AGT-ATA--A-GAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TGTTAGTC--A-TGTT--GAAA-AGTGTTT---A-TTT-A-TGTTAAAATG-GTATC--AT--ACAGAGG-CAG----TTAGACTT-GATTT------------------GAGGGC-ACACTTA-----AAA----TAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAATCTGA------TG-T--GATT---ATCCTAAAGA-AATGTTTTC-A--------CAATTTCTTAAT-GAAT---T-CCATTAA-CAGCTT---C-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTT--A-CTCA-TTT-CT--G-GTTC---A----T-TT--TTCCCCTA-C--GGGGTTAA-A---AGG----TGT-G--TGT-AT-GN---NNNNNNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNC---------------G-CCAAA-AACC-AATATGT-TCTCC---CCA-C--TAAAG-TG----A----A-GG--GAGG-AGGCA---TTATA-AACCA-AGCTTT-GAAAGC--ATGAAA-AATACA-AATCATTAAATA--TTGTGTAAAGGG-ATATAT-AA-TTTCCTCGTGTAAAATA-A----ATGTATT-GTC--T--TTGATTGTA-AAA-CATTCTT-T-----TAAGAAAGTC-TTTTA--CGAAATTACTTTGCATACAGGACCTCTTAAAAT--ATCT-AATGCCTAAAAAGATG-TACCCGATTATTAGAA-TATATGT-GGAAGTCTCACATAGCTAG-TACGCCAAAGCC-TTACACATTCCTAATTATAGAGCGC-ACCGCG-TTTA-T-GAATTTTCTAGT-AAAC-ACGT-GT-ACCCCGGTGTTGAC-CTTGATGACGCGAC-T-TTTTA-A---TAAGA-ATGA----------------TTTT-T--ACCAGGA-TTCC--ATCTACGC-A-TGCGCATTTGAAGGCTTTAAACTCA-AACA--AATA-G-TCAGT
gi|20 : aaaataggAA-AAAC-AATATGT--CTCC---CCA-C--TAATG-TG----G----G-GG--GAtcagtgcagttgccggcagctg
gi|21 : AA-AAAC-AATACGT-G-TCC---CCA-C--CAAAG-TT----G----G-GG--GAGaacataatg
gi|22 : AA-AAAC-AATATGT--CTCC---CCA-C--CATAG-TG----G----G-GG--GAGacataat
gi|23 : AA-AAAC-AATATGT--CTCC---CCA-C--CAAAG-TG----G----G-GA--GAGacataat
gi|24 : AA-AAAC-AATATGT--CTCT---CCA-C--CAAAG-TG----G----G-GG--GAGacataat
gi|25 : A-AAAC-AATATTG-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAAG-acataa
gi|27 : AAC-AATATGT--CTCC---CCA-C--CAAAG-TG----G----G-GG--GAGacat
gi|29 : AA-AGAC-A-TATGT--CTCC---CCA-C--CAAAG-TG----G----G-GG--GGGacataa
gi|3 : TTTGAAAAAAAGCTTTTCG-AGAG-T-CC-G-T-GGGCAAG-T---AGAACTTTATTCTT-------T-TTGACGA-GGGA--TGGGTGGGCC--T---TCTTTTTATTTTTTTTT-TTTGTTT-TTTTGTTTTTGTTTTT-TTTTTTTTTTTTGTTTTATTAATTT--ATTATCATAAAATTTTCTCCTTTAAATTAAT--AATAAAGA--T--AT-ATA--AAG-A--T-TGAGAATGAT-AGGCA-TC-GGAGG-CACAA--GTTTAACG-G-T-T-AGTTTAAGTTTT--TGAA-AGTGTTTGTAA-TTTAA-TGTAT-ACTG-GTAAAT--T--A-ACAGG-CGGTAAATAGGGCTTCGTTTTT---TGAAAAGGGGGGAGGGGGGCAAGACTTACAAAGAAA----AAAAAATCTTTCACAGCACAG-TTGGTATAGT-TATAA--CGGCCCACCTTAGTTTGCACCCTGGTG-TTTTTCCTGAAAT-TGGGGGGGTTG-TTGAATTAAGAACCTAAAGA-AATGTTTTCAAGA-----CCAATTTTTCT-T-GAATGAATTCCATTAAAAAGCTTTCCC-ATTA--GG-TAGGGGGATTT--GAAATCA-AAT-TTACTC-CCCATTTT-CTTGGCGTTTTCGAAT--TATTTATTTTTCTAACTTTT--TTAA-AGCGAGGTTTTTGT-GGTTGTAAT-GTACCGCCCTGAC------AAACT--T-TG-TGGA-A--CGGACTCCCACAG-ACCACCGCATTGG-CCAA-------AACAT-T-TTTCC---CCA-CTACAAAG-TGGAAAG----G-GA--GAGGCGGGCATTTTTATA-AAACC-AGTT---GAAAGC--A
gi|30 : tttaaagcttaAA-AAAC-AATATG--TCTCC---CCA----CAAAG-TG----G----G-GG--GA
gi|4 : AAAAAAAGCTT---G-AGAGAT-CA-G-G-T--CA-G-T---AGA---T-AT-CTT------AT-TTGA-G--GG-A--TGG-TG--TT--TAGT-------GGGTTTTTTT-TTT-TTT-TTTTTTTTTTGTTTTTAATTTT--------ATTAGTTA---T--A---TCATAA---TTTCT-CTTTAAATTAATAAAATTAAAA--A-AAT-ATA--AAGAATGT-TAA-ACTGAT-A-GCA-TC-G--AG-C---AGCGTTCAA---G-TGT-GG-T--AATTTT--GAAATAGTGTTT-T-A-TTT-A-TG-TTAAATG-CTATATA----CCATAGG-CG------AGGACT---A-TTT---TGAA----AGGGTGGCGGGC-ACACTT------AAA----AAAA------TCAC-G-AAAGATT-ACCTA-TTTA-AA--CGC--CAC--TAA-TAGC-TGCTGATG--TT---CTGAAAT---G------TGTT--GATT---AACCTAAAGAGAATGTTTC---GA-----ACAATTTC-TA-TGGAA-----TCCATT-AACAGC--T-TC-ATT--CGGTT----GGATTT--G-A--CTCAA--TTA--CTTTCA-T----TCTGCGTTC---AAT--T-TT--TTTCCCTTAC--TG--TTAA-A--GAGG----TGTCG--TGT-AT-GN---NNNNNNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNNNN-N-C--------------AA-AAACAAATATG--TCTCC---CCA-C--T-AAG-TG----G----A-AGTTGA-G-GGACA---TTATA-AACTA-AGTCTG-AAAGCC--ATGAAA-AAT-TCAAATCATTAAGTAGTTTGTGTAAATGGTA--TATAAA-TTTCCTCGAG-----TATA----ATGTATTGGTC--T--TT-ATTGTA-AAA-CATTCTTAT-----T-ATAAAGTCTTTTAAAGCGAAA-----------ACA-GATC-CCTAA
gi|5 : ttaattagctctaaaattatgaAAAAG-AATGTTTTC-AGA------CA-TTTCTTA-T-GTAT---T-CCATTAA-CAGTTT-----ATTATCGG-T----GGTATT--GAA--CACAATGTTA--C--TCA-TTTACATCGCGTTC---AATGTT-TT--TTTCGCTAAC--TG--TTAAGA--GTGA----TGT----TGT-ATTGT---GCGCTGACGTTTTATAACTTCTATT-TAGAC---TGGA--CCCACAG-A-CA-------GGTCCAAGTAAAC-AACATGTCTCTCCAACTCG-C--TAAAG--G----GAACAG-GG--GAGG-GGGCC---ATATA-AACCATAGTTTTTGAAAGCTGATGAAA-A-TATC-AATCATTAAATA-TTTG-G-AAAGTGTAT-AAT-AC-TTTCCTCGTG-----TA-A----ATGTATGTGTC--TGTTTGATTGTA-AAA-CA-TCTT-T-------ATAAAGTCTTTT-A--CGAAATACTTTTGCATACA-GACC-CTTAAAATTAATCT-AATG-CTAAAAAGATGATACCCGATTA--AGAATTCTATGT-GGAAGTTCCACATAGCT-G-TACCCC-AAGCCGTTACACATAATT-ATTA--GAATGC-ACCGCGGTTTT-T-G-ATTTTCT-GT-AAACTACGTTGTTACCCCTGTGTT-ACGCTTGATGACGCGAC-TATTATATA---T-AGA-ATGA----------------TTTT-T--ACCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGA
gi|6 : CTTTTGAAAA-AAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTA-TCTT------AT-TTGA-GAGGG-A--TGG-TG--CT--TAGTGTT-----GTTTTTTTT-TTT-TTA-TTTT-------ATTTT-A-TTT--------ATTCATTA----------TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-GAG-TGT-AA-T--AA-TTT--GAAA-AGTGGTT-T-A-TTT-A-T-TTTAAATG-GTAT---AT--ACAGAGG-C-G----TAGGAC-T-GA-TTT---TGAA----GGGGGGGGGGGC-ACACTT-------AA----AAAA------TCACAG-AAAG--T-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-T-G------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AG------ACAA-TTCTTA-T-GAA----TTCCATT-AACAGC--T-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA----CTCA-TTT-CT--GCGTTC---AA-----TT--TTTCCCT-AC--TG--TTAA-A--GAGG----TGT-G--TGA-AT-G
gi|7 : tttagA-AAAC-AATATGT--CTCC---CCA-C--TAAAG-TG----G----AAGG--GAAG-GGGCA---TTATA-AACCA-AGTTTG--AAAGC--ATGAA---------------CAAATA-TTTGTGTAAAGG-TAT--AT-AA-TTTCCTTGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAC-CA-TCTT-T-----T-ATAAAAGTATTTTA--CGAGATAC------------------TTAAAAT-AATCTGAATG-CTAAAA-GATG-TACC-GAT-A-TAGAAT-CTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACAT-CTA-ATTATAGAGCGCCACCGCT-GTTA-TTG-ATTTTCT-GT-AAAC-ACGT-GT-ACCCCGGTGTT-AC-CTTGATGATGCGACTT-TTATATA---T-AG--ATGA----------------TTTT-TTACCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAGG--TT--AACTCACA--A-CAATA-GTTCAGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|8 : TTTTGAAAAAAAGCTT--AG-AGAG-TCCA-GCT-G--TA-GTT---AGA---TTA-TCTT------AA-TTGA-GA-GG-G--AGG-CGTACT--TA-------TTGTTTTTTTTT-TTT-TTT-TATGGTATTTG---TT-A--TT--------ATTTATTA----------TC-TAG---ATTCT-CTTTAAATTAA-AAAATAAAAA--T-AAT-ATATTAAGAA--T-TGA-AAT-AT-A-GCA-TCGG--AGCC---A--GTTCAA-G-GTTGT-AGTT--AATTTTTGAAAA-AGTGTTT-T-A-TTT-A-TTGTTAAATGCGT---TAATTAACAGA-G-CGC----TAGGGACT-GATTTT---CGAA----GGGGGGGGGGGC------TA-----AAA----GAccggtgggcactga
gi|9 : tttagct--T--TTGATTGTA-AAA-CA-TCTT-TAATTTT-ATAAAGTCTATT-A--CCAAATAC-TTTGCATACA-GACC-CTTAAAAT-AATCT-AACG-CTAAAAAGATG-AACCCGATTA-TAGAA-TCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACA----------------GC-ACCGCG-TTTATT-G-ATGTTCC-GT-
blockSeqs : TTC G A C . CT GG A T TTT ACT T TTCATT C C G ACA GT CTGTTAGTTTTTT T . G T GTT A AAT TTTTTTTG ATTTATTA AAT C ATC . TT TG . G . G . G GA C ACAA CG T T TTTA G TG T GTA . A . GT C TAATTA . GGTAAA TTC T T AAGGG A ACAAAG CAAG AATCTT C TTG C T . GCC CT C A T TTC TGGGGGGGT T TG AAG G A ACATATA AT A G TGAA T T A TTTC A T T AGGG TC AT TG CTC T A TG TCGAATTA TA AA TT GG AGC TTTT GGT A T ACC CGTTTTA TCTA A CAGA CT ACCACCGCATT T T A TCT AAC C TA T GAAA AACA A TT C TTT . T TTG TG . A A A G C TAT A . TAAAA T ATTT G . GT . . T A AATTTT T AAAG C G T TA G C A C TT TT . A . A G TTCCTA TA C G T T A A . T T T C T G G T A T GAT A A GTCTGATAATAAGGTA TTAC . A . . A GT TA T C A AC . T
blockSeqs : A . . . . T . . . . . T . . . . GA T GGCCTTCTTT A . . T TTT T AT . TAT . . T . . . . . . . . . . . AGC GA . . TC A . . T . . . GT . CAT . AG TT T T A . A . . . ATT T . . C . T . T . CTGA . . . . . AC AT . . A T A A TT . . . G . . T CT . . CT AATGTT . TA . . GA . CG . . . NNN TTG . NN . GACA . . . TT . . . . . AA . . . . . . TG . . A A . . G TA . . . . . G . . . . T . TA T TA T . . A . . . C T T . . . . G TAATT TA . . . . . . . . . . C T . . . . T . . A . TT . A . . G GC . T . A C . .
blockSeqs : A . . . . T . . . . . T . . . . A T CTTAGTGTT G . . A GTA T TT . TA . . A . . . . . . . . . . . A G . . TT A . . T . . . TG . ATT . GC CT T T G . A . . . TT C . . . . C . T . TG . . . . . AA AT . . T T A A TT . . . . . . T A . . TC AATT . AA . . A . G . . . NNN NNN . NN . ACA . . . TG . . . . . . . . . . . . GA . . A A . . G T . . . . . T . . . . . . T A TA . . . A . . . C T T . . . . G TCTA . . . . . . . . . . . C T . . . . A . . A . TA . A . . . . . . . . . . .
blockSeqs : A . . . . T . . . . . . . . . . A C TTTAGT G . . T G A A . . . . T . . . . . . . . . . . A G . . T A . . T . . . G . ATA . G T T T G . A . . . T . . . . . . . . . G . . . . . A T . . T T A A T . . . . . . T C . . . AT . A . . A . G . . . C NNN . A . NC . . . GT . . . . . . . . . . . . G . . . . . . G T . . . . . G . . . . . . T T A . . . . . . . . . T . . . . . . . . . . . . . . . . . . A . . . . TA . . . .
blockSeqs : A . . . . G . . . . . . . . . . G . TACTTA . . . . . . A . . . . T . . . . . . . . . . . A . . . T . . . . . . . T . AT . G T . T . . . . . . . . A A . . . . . . T . . . . . . . . . . . AA . A . . A . . . . . . T . C . . . . . TT . . . . . . . . . . . . G . . . . . . . T . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . T . . . . . . . . G T . . . . . . . . . . . . . . . . T . . . . . . . . . . . . T . . . . . . . . . . . . G . . . . . .
blockSeqs : . . C . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . .
blockSeqs : . . T . . . . . . . . .
blockSeqs : . . T . . . . . . . . .
blockSeqs : . . T . . . . . . . .
blockSeqs : . . T . . . . . . . .
blockSeqs : . . T . . . . . . . .
blockSeqs : . . T . . . . . . . .
blockSeqs : . . T . . . . . . . .
blockSeqs : . . T . . . . . . . .
blockSeqs : . . T . . . . . . . .
blockSeqs : . T . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : A** T** GCTTAGCTTT***** T* TA******** T*** G** TT** ATT**** G***** T** T*** TT** ** T* TT** AATT****** A*** T** **** TG* T** ** TA** T* TT**** A* TA*** A*
originalCons : CTTTTGAAAAAAAGCTT--AG-AGAG-T-CA-G-T-G--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TG--CT--TAGTTTTTTTTGGTTTTTTTT-TTT-TTT-TTTTGTTTTTGNTTTT-ATTTT--------ATTTATTA---T--AT--TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAA-G-G-TGT-AGTT--AATTTT--GAAA-AGTGTTT-T-A-TTT-A-TGTTTAAATG-GTATATAAT--ACAGAGG-CGG----TAGGACTT-GATTTT---TGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT-TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTC---AAT--T-TT--TTTCCCTAAC--TG--TTAA-A--GAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATATGT-TCTCC---CCA-C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTG-GAAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT-TAT-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAAT-AATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAATTCTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACATTCTT-ATTATAGAGCGC-ACCGCG-TTTA-T-G-ATTTTCT-GT-AAAC-ACGT-GT-ACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGA-ATGA----------------TTTT-T--NCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAAGGTTT--AACTCACAACA-CAATA-G-TCAGTG
finalCons : CTTTTGAAAAAAAGCTTA--G-AGAG-T-CA-GT--G--CA-G-T---AGA---TTATTCTT------AT-TTGA-GA-GG-A--TGG-TGGCTTAGCTTT-----TTGGTTTTTTTT-TTT-TTT-TTTTGTTTTTGNTTTT-ATTTT--------ATTTATTATA--------TCATAA---TTTCT-CTTTAAATTAATAAAATAAAAAT---AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TC-G--AG-C---A--GTTCAAG--G-TGT-AGTT--AATTTT--GAAA-AGTGTTT-T-A-TTT-A-TGTTTAAATG-GTATATT----ACAGAGG-CG-----TAGGACT--GATTTT---TGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAGTT--GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATGT-TT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTT--TC-ATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTCAATT------TT--TTTCCCTAAC--TG--TTAAA---GAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATATGT--CTCC---CCA-C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTTG-AAAGC--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGGTAT--AT-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAAT-AATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAAT-CTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACATT----ATTATAGAGCGC-ACCGCG-TTTA-T-G-ATTTTCT-GT-AAAC-ACGT-GT-ACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGA-ATGA----------------TTTTTA---CCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAAGGTTT--AACTCACAACA-CAATA-G-TCAGTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|26 ): GATGTAGTGATCAAGAGGTTTTCATAATGTAATATCCGT
Unaligned ( gi|28 ): ATGTTGAGGATGTGTTGAATCGAAGATATCAGTAACT
Unaligned ( gi|31 ): TTTCTAAAAAAAAAAAAATGCATTAAATGTCT
Alignments
lowQualScore : 111 111 111 11 111111 4444444444444444444444 22222222 222222222222 111 1111 11 111111 111 1111 1 111 1111 1111111111 11 1111 11111 111111 1111 111111 1111 11 222 11 111 4444444444 11 111 2222222 1111 222 1111 2222 11 2222222222 1111 1111 1111 111 2222222 1111 222222222222 1111 1 11111 1111 1 2222222 1111 1 1 444444444 1 1 1 1 111 6666666666666666 1111 11 11 1 1
lowQualScore : 555 5 5 555 555 77 5 555 000 00 666666 6 6 6 6 6666666666666666666666 6 6 5 3 7 6 44444444 000000000000 111 6 3333 6 99 99 6 6 6 6 6 55 888888 111 6 6 2222 1 99 3 222 6 6 6 55 6 5555 6 5 7777777777 5 99 33 1111 55555 5 0 999999 2222 999999 6 7777 3 8 11 222 0 11 3 8 88 444 0000000000 8 11 444 5 5 0000000 66 0 5 5 8888 5 8 5 5 000 5 5 7777 77 77 77 1111 5 5 99 0000000000 99 66 99 99 3333 4444 4444 6 6 111 7777777 8888 6 6666 99 0 999999999999 6 2 2 2 2 2 77777 22 2 4444 0000 2 22 3 777 5 5 4 77 5 77 6 3 3 6 6 99 6 6 6 6 66666 6 4444 6 77 77 0 5 5 1 6 2222222 3 1111 3 6 6 88 8 8 0 6 5 0 88 8 8 8 8 8 8 5 666666666 8 8 8 6 8 8 8 0 0 0 2 3 8 8 8 8 1 0 444 8 88 1111111111111111 1111 8 88 8 8 7 33 33 3 8 3 22 0 0
lowQualScore : ... . . ... ... .. . ... ... .. ...... . . . . ...................... . . . . . . ........ ............ ... . .... . .. .. . . . . . .. ...... ... . . .... . .. . ... . . . .. . .... . . .......... . .. .. .... ..... . . ...... .... ...... . .... . . .. ... . .. . . .. ... .......... . .. ... . . ....... .. . . . .... . . . . ... . . .... .. .. .. .... . . .. .......... .. .. .. .. .... .... .... . . ... ....... .... . .... .. . ............ . . . . . . ..... .. . .... .... . .. . ... . . . .. . .. . . . . . .. . . . . ..... . .... . .. .. . . . . . ....... . .... . . . .. . . . . . . .. . . . . . . . ......... . . . . . . . . . . . . . . . . . . ... . .. ................ .... . .. . . . .. .. . . . .. . .
lowQualScore : 000 7 7 999 999 99 7 777 000 00 444444 7 7 7 7 2222222222222222222222 7 7 2 2 5 7 22222222 222222222222 777 7 7777 7 22 22 7 7 7 7 7 88 555555 777 7 7 5555 7 22 3 555 7 7 7 77 7 2222 7 7 3333333333 7 33 11 4444 11111 7 7 333333 1111 222222 7 6666 2 0 00 000 8 00 2 0 88 000 0000000000 0 00 000 7 7 6666666 44 1 7 7 7777 0 7 0 0 777 7 7 9999 99 99 11 4444 7 7 88 2222222222 22 77 22 22 5555 2222 2222 7 7 777 3333333 0000 7 2222 22 8 000000000000 7 2 0 0 0 0 00000 88 0 2222 5555 0 88 6 888 0 7 1 11 7 99 7 2 2 7 7 22 7 7 7 7 77777 7 2222 7 99 99 7 7 7 4 7 5555555 5 8888 5 7 7 88 0 0 8 0 0 8 88 0 0 0 0 0 0 0 888888888 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 4 8 000 0 88 0000000000000000 0000 0 88 0 0 0 22 88 2 8 2 55 0 0
consensus : CTTTTGAAAAAAAGCTT--AG-AGAG-TC-A-G-T-G--CA-GT---AGA---TTATTCTT------AT-TTGA-GA-GG-ATGG-TGG--CTTAGCTTTTT---GGTTTTTTTTTTT-TTT-TTTTGTTTTTGNTTTT-ATTTT--------ATTTATTA------T--AT-CATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TCG--AGC---A--GTTCAA-G-GT-GT-AGTT--AATTTT--GAAA-AGTGTTT-T-A-TTT-A-TGTTTAAATG-GTATAT---TA-CAGAG-G--C-G-----TAGG-ACTT-GATTTT---TGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT--CATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTC---AAT--T-TT--TTTCCCTAAC--TG--TTAA-A--GAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATAT-G-T-CTCCCCA-----C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTT-GAAAG-C--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGG-TA-TA-T-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAAT-AATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAA-T-CTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACA---TT----ATTAT-AGAGCG-CACCGCG-TTTATTG-ATTTTCT-GT-AAAC-ACGT-GT-ACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGA-ATGA----------------TTTT-TA-CCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAAGGTTT--AACTCACAACA-CAATA-G-TCAGTG
Reference ( family-533 ) : CTTTTGAAAAAAAGCTT--AG-AGAG-TC-A-G-T-G--CA-GT---AGA---TTATTCTT------AT-TTGA-GA-GG-ATGG-TGG--CTTAGCTTTTT---GGTTTTTTTTTTT-TTT-TTTTGTTTTTGNTTTT-ATTTT--------ATTTATTA------T--AT-CATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TCG--AGC---A--GTTCAA-G-GT-GT-AGTT--AATTTT--GAAA-AGTGTTT-T-A-TTT-A-TGTTTAAATG-GTATAT---TA-CAGAG-G--C-G-----TAGG-ACT--GATTTT---TGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-TGG------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTT--CATTA-CGG-T----GGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCCGCGTTC---AAT--T-TT--TTTCCCTAAC--TG--TTAA-A--GAGG----TGT-G--TGT-AT-GT---GCGCTGACG----AAAACTTCT-TG-TGGACA--CGGA--CCCACAG-A-CA-------GG-CCAAA-AAAC-AATAT-G-T-CTCCCCA-----C--CAAAG-TG----G----G-GG--GAGG-GGGCA---TTATA-AACCA-AGTTTT-GAAAG-C--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGG-TA-TA-T-AA-TTTCCTCGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCTT-T-----T-ATAAAGTCTTTTTA--CGAAATACCTTTGCATACA-GACC-CTTAAAAT-AATCT-AATG-CTAAAAAGATG-TACCCGATTA-TAGAA-T-CTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACA---TT----ATTAT-AGAGCG-CACCGCG-TTTA-TG-ATTTTCT-GT-AAAC-ACGT-GT-ACCCCGGTGTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGA-ATGA----------------TTTT-TA-CCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAAGGTTT--AACTCACAACA-CAATA-G-TCAGTG
gi|1 : CTTTTGAAAAACAGCTTT-AG-AGAG-TC-ATG-TTG--CA-GT---AGA---TTATTCTT------AT-TTGA-GA-GG-ATGG-TG---CTTAATTTTTTTTGGGTTTTTTTGTTT-TTTGTTTTGTTTTTGGTTTT-ATTTT--------ATTTATTA------TTCATTCATAA---TTTCT-CTTTAAATTAATAAA-TAAAAA--TTAATTATA--AAGAA--TATGA-AATGATCA-GCAGTCG--AGC---A--GTTCAA-G-GT-GT-AGCT--AATTTT--GAAATAGTGTTT-T-AGTTT-ACTGTTTAAATG-GTATATAATCA-CAGAG-GACT-G-----TAGG-ACTT-GATTTGAAGGGAA----GGGGGGGGGGGC-ACACTTA-----AAA----AAAT------TCACAG-AAAG-T--GTATAGTCTA-AAATCG---C-C--TAACTAGC-TGCTGATGGTTT---CTGAAAT-TG-------TG-T--GATT---AACCTAAAGA-AAT-----C-AGA-----ACAATTTCTTA-T-GAAT---TTCCATTAAACAGCTTTT-CATTA-CTG-T----AGATTT--GAA--CACAAT-TTA--C-CTCA-TTT-CTCTGCGTTC---AAA--T-TT--TTTCCCTACC--TG--TTAATA--GAAG----TGT-G--TGT-AT-GT---GCGCTGACA----AAAACTTCT-TG-TGGACG--CGGG--CCCACAG-A-CA-------GG-CCAAA-AACC-AATAT-GTT-CTCCTCA-----C--TAAAG-TG----GCAA-G-GG--GAGG-AGTCA---TTATACAACCA-AGTCTG-GAAAG-C--ATGAAATAATATC-AATCATTAAATA-TTTGTGTAAAGGG-TATTA-T-AATTTTCCTCGTG-----TA-A----A-GTACTTATCGTT--TCCATTGTACAAATCA-TC-T-T-----T-ATAACGTCTTTTTA--CGACATACCTTTGCATACA-GACC-CTTAAAAT-AATCT-AATG-CTATAAAGATGTTACCAGATTA-TAGAATT-CTATGTGGGAAGTCTCACATAGCT-GTTACGCC-AACCTCTTACACACTCTT----ATTAT-AGAGCG-CACCGCG-TTTA-TG-ATTTTCT-GTAAAAC-ACGT-GT-A--CCGG-GTT-AC-CTTGATGACGCGAC-T-TTATATA---T-AGATATGA----------------TTTTACC-CCAGGATTTCCACATCTACGCTATTGCGCATTGGAAGGTTT--AACTCACAACA-CAATACG-TCAGTG
gi|10 : A-AAAC-AATAT-G-T-CTCCCCA-----C--TAAAG-TG----GAA--G-GG--GA-G-GGACA---TTATA-AACCA-CG-TTT-GAAAG-C--ATGAAA-AATATC-AATCATTAAATA-TTTGTGTAAAGGC-TA-TA-T-AA-TTTCCTCGTG-----TA-AATTTATGTATTGGTC--T--TTGATTGTA-AAA-CA-TCT
gi|11 : TT-AG-CTTGATGACGCGAC-T-CTTTATAGATT-AGA-CTGAGTCTGATAATAAGGTATTTT-TT-CCCGAA-TCCCA-ATCGAATC-A-T-----TTGGA--GTTT--AGC----AACAACAATA-G-TCAGTG
gi|12 : AGA-AATGTTATC-AGACATATACA---TCT-A-T-GAAA---TTCAATTTAACAGCTTC--AATTA-CGG-TG---GGATTTTCAAG--CACA---TTA----CTCA-TTT-TTcgtttactgac
gi|13 : g---GCGCTGA-------AAACTTTG-TGATGGACAGATGGA--CCCAAAGGA-CA-------GG-CCAAA-AAAC-A---T-G-C-CTCCGCA-----C--CAAAG-GG----G----G-GG--GGGg
gi|14 : AG-G--C-G-----TAGG-ACT--GATTTT---TGAA------GGGGGAGGGC-AGACTTA-----AAACAAGAAAA------TCAAAG-AA
gi|15 : aCTTTTGAAAAAAATCTT--AC-AGAG-TC-A-G-T-G--CA-GT---AGA---TTA-TCTT------A
gi|16 : caagtttagAA-AAAC-AAT---G-T-CTCCCCA-----C--CAAAG-TG----G----G-GG--GGGG-GGG
gi|18 : cAA-AAAC-AATAT-A-T-CTCCCCT-----C--CAAAGTTG----G----G-GG--GGGG-GGGTA---TTggggggaacataa
gi|19 : AAT-AATAT-G-T-CTCCTCAC----C--CAAAG-GG----G----G-GG--GGGG-GGACA---TAATA-
gi|2 : CTTTTGAAAAAA-GCTT--AGGAGAG-TC-A-G-T-G--CA-GTTTTAGA---TTATTTTTTTCATTATCTTGA-GA-GG-ACA--TG------AGCTGTT----AGTTTTTTTTTGT-TTT-TGTTTTTTTGGATTTT-ATTTT--------ATTTATTA------T--AT-CATGA---TT-CT-CTTTAAATTAATAAAATAAAAAATC-AGT-ATA--A-GAA--T-TGA-AATGAT-A-GCA-TCG--AGC---A--GTTCAA-G-GT-GTTAGTC--A-TGTT--GAAA-AGTGTTT---A-TTT-A-TGTTAAAATG-GTATCA---TA-CAGAG-G--CAG-----TTAG-ACTT-GATTT------------------GAGGGC-ACACTTA-----AAA----TAAA------TCACAG-AAAG-TT-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAATCTGA------TG-T--GATT---ATCCTAAAGA-AATGTTTTC-A--------CAATTTCTTAAT-GAAT---T-CCATTAA-CAGCTT---CATTA-CGG-T----GGATTT--GAA--CACAAT-TTT--A-CTCA-TTT-CT--G-GTTC---A----T-TT--TTCCCCTA-C--GGGGTTAA-A---AGG----TGT-G--TGT-AT-GN---NNNNNNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNC---------------G-CCAAA-AACC-AATAT-G-TTCTCCCCA-----C--TAAAG-TG----A----A-GG--GAGG-AGGCA---TTATA-AACCA-AGCTTT-GAAAG-C--ATGAAA-AATACA-AATCATTAAATA--TTGTGTAAAGGGATA-TA-T-AA-TTTCCTCGTGTAAAATA-A----ATGTATT-GTC--T--TTGATTGTA-AAA-CATTCTT-T-----TAAGAAAGTC-TTTTA--CGAAATTACTTTGCATACAGGACCTCTTAAAAT--ATCT-AATGCCTAAAAAGATG-TACCCGATTATTAGAA-T-ATATGT-GGAAGTCTCACATAGCTAG-TACGCCAAAGCC-TTACACA---TTCCTAATTAT-AGAGCG-CACCGCG-TTTA-TGAATTTTCTAGT-AAAC-ACGT-GT-ACCCCGGTGTTGAC-CTTGATGACGCGAC-T-TTTTA-A---TAAGA-ATGA----------------TTTT-TA-CCAGGA-TTCC--ATCTACGC-A-TGCGCATTTGAAGGCTTTAAACTCA-AACA--AATA-G-TCAGT
gi|20 : aaaataggAA-AAAC-AATAT-G-T-CTCCCCA-----C--TAATG-TG----G----G-GG--GAtcagtgcagttgccggcagctg
gi|21 : AA-AAAC-AATAC-G-T-GTCCCCA-----C--CAAAG-TT----G----G-GG--GAGaacataatg
gi|22 : AA-AAAC-AATAT-G-T-CTCCCCA-----C--CATAG-TG----G----G-GG--GAGacataat
gi|23 : AA-AAAC-AATAT-G-T-CTCCCCA-----C--CAAAG-TG----G----G-GA--GAGacataat
gi|24 : AA-AAAC-AATAT-G-T-CTCTCCA-----C--CAAAG-TG----G----G-GG--GAGacataat
gi|25 : A-AAAC-AATATTG-T-CTCCCCA-----C--CAAAG-TG----G----G-GG--GAAG-acataa
gi|27 : AAC-AATAT-G-T-CTCCCCA-----C--CAAAG-TG----G----G-GG--GAGacat
gi|29 : AA-AGAC-A-TAT-G-T-CTCCCCA-----C--CAAAG-TG----G----G-GG--GGGacataa
gi|3 : TTTGAAAAAAAGCTTTTCG-AGAG-TC-C-G-T-GGGCAAGT---AGAACTTTATTCTT-------T-TTGACGA-GGGATGGGTGGGCCTT--CTTTTT---ATTTTTTTTTTTTGTTT-TTTTGTTTTTGTTTTT-TTTTTTTTTTTTGTTTTATTAATTTATT--AT-CATAAAATTTTCTCCTTTAAATTAAT--AATAAAGA--T--AT-ATA--AAG-A--T-TGAGAATGAT-AGGCA-TCGGAGGCACAA--GTTTAACG-GT--T-AGTTTAAGTTTT--TGAA-AGTGTTTGTAA-TTTAA-TGTAT-ACTG-GTAAAT---TA--ACAG-G--C-GGTAAATAGG-GCTTCGTTTTT---TGAAAAGGGGGGAGGGGGGCAAGACTTACAAAGAAA----AAAAAATCTTTCACAGCACAG-TTGGTATAGT-TATAA--CGGCCCACCTTAGTTTGCACCCTGGTG-TTTTTCCTGAAAT-TGGGGGGGTTG-TTGAATTAAGAACCTAAAGA-AATGTTTTCAAGA-----CCAATTTTTCT-T-GAATGAATTCCATTAAAAAGCTTTCCCATTA--GG-TAGGGGGATTT--GAAATCA-AAT-TTACTC-CCCATTTT-CTTGGCGTTTTCGAAT--TATTTATTTTTCTAACTTTT--TTAA-AGCGAGGTTTTTGT-GGTTGTAAT-GTACCGCCCTGAC------AAACT--T-TG-TGGA-A--CGGACTCCCACAG-ACCACCGCATTGG-CCAA-------AACAT-T-T-TTCCCCA-----CTACAAAG-TGGAAAG----G-GA--GAGGCGGGCATTTTTATA-AAACC-AG--TT-GAAAG-C--A
gi|30 : tttaaagcttaAA-AAAC-AATAT-G-T-CTCCCCA--------CAAAG-TG----G----G-GG--GA
gi|4 : AAAAAAAGCTT---G-AGAGATC-A-G-G-T--CA-GT---AGA---T-AT-CTT------AT-TTGA-G--GG-ATGG-TG---TTTAG----TG---GGTTTTTTTTTTT-TTT-TTTT-TTTTTGTTTTTAATTTT--------ATTAGTTA------T--AT-CATAA---TTTCT-CTTTAAATTAATAAAATTAAAA--A-AAT-ATA--AAGAATGT-TAA-ACTGAT-A-GCA-TCG--AGC---AGCGTTCAA---GT-GT-GG-T--AATTTT--GAAATAGTGTTT-T-A-TTT-A-TG-TTAAATG-CTATAT---AC-CATAG-G--C-G------AGG-ACT--A--TTT---TGAA----AGGGTGGCGGGC-ACACTT------AAA----AAAA------TCAC-G-AAAGATT-ACCTA-TTTA-AA--CGC--CAC--TAA-TAGC-TGCTGATG--TT---CTGAAAT---G------TGTT--GATT---AACCTAAAGAGAATGTTTC---GA-----ACAATTTC-TA-TGGAA-----TCCATT-AACAGC-TT--CATT--CGGTT----GGATTT--G-A--CTCAA--TTA--CTTTCA-T----TCTGCGTTC---AAT--T-TT--TTTCCCTTAC--TG--TTAA-A--GAGG----TGTCG--TGT-AT-GN---NNNNNNNNN----NNNNNNNNN-NN-NNNNNN--NNNN--NNNNNNN-N-C--------------AA-AAACAAATAT-G-T-CTCCCCA-----C--T-AAG-TG----G----A-AGTTGA-G-GGACA---TTATA-AACTA-AG-TCT-GAAAGCC--ATGAAA-AAT-TCAAATCATTAAGTAGTTTGTGTAAATGG-TA-TA-TAAA-TTTCCTCGAG-----TATA----ATGTATTGGTC--T--TT-ATTGTA-AAA-CATTCTTAT-----T-ATAAAGTCTTTTAAAGCGAAA-----------ACA-GATC-CCTAA
gi|5 : ttaattagctctaaaattatgaAAAAG-AATGTTTTC-AGA------CA-TTTCTTA-T-GTAT---T-CCATTAA-CAGTTT----ATTATCGG-T----GGTATT--GAA--CACAATGTTA--C--TCA-TTTACATCGCGTTC---AATGTT-TT--TTTCGCTAAC--TG--TTAAGA--GTGA----TGT----TGT-ATTGT---GCGCTGACGTTTTATAACTTCTATT-TAGAC---TGGA--CCCACAG-A-CA-------GGTCCAAGTAAAC-AACAT-G-T-CTCTCCAACTCGC--TAAAG--G----GAACAG-GG--GAGG-GGGCC---ATATA-AACCATAGTTTTTGAAAG-CTGATGAAA-A-TATC-AATCATTAAATA-TTTG-G-AAAGTG-TA-TAAT-AC-TTTCCTCGTG-----TA-A----ATGTATGTGTC--TGTTTGATTGTA-AAA-CA-TCTT-T-------ATAAAGTCTTTT-A--CGAAATACTTTTGCATACA-GACC-CTTAAAATTAATCT-AATG-CTAAAAAGATGATACCCGATTA--AGAA-TTCTATGT-GGAAGTTCCACATAGCT-G-TACCCC-AAGCCGTTACACA---TA----ATTATTAGAATG-CACCGCGGTTTT-TG-ATTTTCT-GT-AAACTACGTTGTTACCCCTGTGTT-ACGCTTGATGACGCGAC-TATTATATA---T-AGA-ATGA----------------TTTT-TA-CCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGA
gi|6 : CTTTTGAAAA-AAGCTT--AG-AGAG-TC-A-G-T-G--CA-GT---AGA---TTA-TCTT------AT-TTGA-GAGGG-ATGG-T-G--CTTAG-----T---G---TTGTTTTTT-TTT-TTTTATTTT--ATTTT-A-TTT--------ATTCAT--------T--AT-CATAA---TTTCT-CTTTAAATTAATAAAATAAAAA--T-AAT-ATA--AAGAA--T-TGA-AATGAT-A-GCA-TCG--AGC---A--GTTCAA-GAGT-GT-AA-T--AA-TTT--GAAA-AGTGGTT-T-A-TTT-A-T-TTTAAATG-GTATA----TA-CAGAG-G--C-G-----TAGG-ACT--GA-TTT---TGAA----GGGGGGGGGGGC-ACACTT-------AA----AAAA------TCACAG-AAAG--T-GTATAGTCTA-AA--CG---CAC--TAACTAGC-TGCTGATG-TTT---CTGAAAT-T-G------TG-T--GATT---AACCTAAAGA-AATGTTTTC-AG------ACAA-TTCTTA-T-GAA----TTCCATT-AACAGC-TT--CATTA-CGG-T----GGATTT--GAA--CACAAT-TTA----CTCA-TTT-CT--GCGTTC---AA-----TT--TTTCCCT-AC--TG--TTAA-A--GAGG----TGT-G--TGA-AT-G
gi|7 : tttagA-AAAC-AATAT-G-T-CTCCCCA-----C--TAAAG-TG----G----AAGG--GAAG-GGGCA---TTATA-AACCA-AGTTT--GAAAG-C--ATGAA---------------CAAATA-TTTGTGTAAAGG--TA-TA-T-AA-TTTCCTTGTG-----TA-A----ATGTATTGGTC--T--TTGATTGTA-AAC-CA-TCTT-T-----T-ATAAAAGTATTTTA--CGAGATAC------------------TTAAAAT-AATCTGAATG-CTAAAA-GATG-TACC-GAT-A-TAGAA-T-CTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACA---TCTA--ATTAT-AGAGCGCCACCGCT-GTTATTG-ATTTTCT-GT-AAAC-ACGT-GT-ACCCCGGTGTT-AC-CTTGATGATGCGACTT-TTATATA---T-AG--ATGAT---------------TTTT-TACCCAGGA-TTCCA-ATCTACGC-A-TGCGCATTGGAGG--TT--AACTCACA--A-CAATA-GTTCAGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|8 : TTTTGAAAAAAAGCTT--AG-AGAG-TCCA-GCT-G--TA-GTT--AGA---TTAT-CTT------AA-TTGA-GA-GG----G-AGG--CGTA-CTTATT---GTTTTTTTTTTTT-TTT-TATGGTATTTG---TT-ATT----------ATTTATTA------T-----C-TAG---ATTCT-CTTTAAATTAA-AAAATAAAAA--T-AAT-ATATTAAGAA--T-TGA-AAT-AT-A-GCA-TCGG-AGCC--A--GTTCAA-G-GTTGT-AGTT--AATTTTTGAAAA-AGTGTTT-T-A-TTT-A-TTGTTAAATGCGTTAAT---TAACAGAGCG--C-------TAGGGACT--GATTTT---CGAA----GGGGGGGGGGGC------TA-----AAA----GAccggtgggcactga
gi|9 : tttagct--T--TTGATTGTA-AAA-CA-TCTT-TAATTTT-ATAAAGTCTATT-A--CCAAATAC-TTTGCATACA-GACC-CTTAAAAT-AATCT-AACG-CTAAAAAGATG-AACCCGATTA-TAGAA-T-CTATGT-GGAAGTCTCACATAGCT-G-TACGCC-AAGCCGTTACACA--------------------G-CACCGCG-TTTATTG-ATGTTCC-GT-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|26 ): GATGTAGTGATCAAGAGGTTTTCATAATGTAATATCCGT
Unaligned ( gi|28 ): ATGTTGAGGATGTGTTGAATCGAAGATATCAGTAACT
Unaligned ( gi|31 ): TTTCTAAAAAAAAAAAAATGCATTAAATGTCT