lowQualScore : 111111111111111111111111111111111
lowQualScore : 2222 1 2 11111 111 1 8888888888888888888888888888888 3333333 1111 22 111 3 11111 11 3333333333 11111 33333333 1 2 33 111 5555555 22 1111 111 8888888888888888888 444444444 2 222 3333333 1 11 22222 555 222 3333333 1 33333 2222222222222222 2222222222222 11 333 2222222 333333333 2 222 222 2 11 333333333333 22 111 55555555555555 11 333333333 22 11 999999999999999999999999 11 1 1 1 111 222222222222222222222222222222222 1 111 1 222 1 11 1 1 33 22 11 1 111 22222 111111111 555555555 222 1 11 11111111111111 111 11 1 11 11111111 11 111 11 111111 1111 333333333333333333 333 111111 11 22222 1 111 44444444 1 555555555555555555 3333333333333333 2 11111 1111
lowQualScore : 5555 6 6 9 6 4 55 22222 5 000 7 1 5 7 3 3333333333333333333333333333333 8 3333333 7777 99 8 8 111 8 0 88888 11 3333333333 44444 6 22222222 3 99 6 99 6 2 6 6 33 111 6 6 99 6 1111111 6 99 99 4444 6 6 444 8 4444444444444444444 000000000 8 8 0 0 000 99 44 2222222 0 7 33 3 44444 2 8 666 222 8 8 1111111 6 66666 77 5 5 0000000000000000 0 0 6666666666666 33 1 666 555 6 1 1 3333333 99 6 6 666666666 6 6 6 1 6 6 99 6 6 6 666 1 888 5 555 6 6 3 6 55 333333333333 22 666 6 8 8 44444444444444 8 11 555555555 3 8 11 99 111111111111111111111111 55 6 33 3 3 3 7 999 666666666666666666666666666666666 0 111 0 777 0 33 0 0 00 88 33 0 3 444 0 77777 8 999999999 8 666666666 0 999 8 111 3 0 99 8 77777777777777 0 444 8 66 6 8 44 8 99 77777777 11 8 66 8 111 88 11 6 111111 0 6666 999999999999999999 9 0 777 88 0 777777 88 8 11 00000 8 5 1 000 5 0 77777777 2 33 3 5 5 5 000000000000000000 5 5 0000000000000000 1 5 2 4 5 99999 1111 6 6 6 99 6
lowQualScore : .... . . . . . .. ..... . ... . . . . . ............................... . ....... .... .. . . ... . . ..... .. .......... ..... . ........ . .. . .. . . . . .. ... . . .. . ....... . .. .. .... . . ... . ................... ......... . . . . ... .. .. ....... . . .. . ..... . . ... ... . . ....... . ..... .. . . ................ . . ............. .. . ... ... . . . ....... .. . . ......... . . . . . . .. . . . ... . ... . ... . . . . .. ............ .. ... . . . .............. . .. ......... . . .. .. ........................ .. . .. . . . . ... ................................. . ... . ... . .. . . .. .. .. . . ... . ..... . ......... . ......... . ... . ... . . .. . .............. . ... . .. . . .. . .. ........ .. . .. . ... .. .. . ...... . .... .................. . . ... .. . ...... .. . .. ..... . . . ... . . ........ . .. . . . . .................. . . ................ . . . . . ..... .... . . . .. .
lowQualScore : 8888 7 7 2 7 6 99 33333 7 000 3 0 0 3 5 1111111111111111111111111111111 0 6666666 0000 88 0 0 888 0 2 88888 22 4444444444 88888 7 00000000 3 22 7 22 0 5 7 7 22 777 7 7 22 7 5555555 7 22 22 7777 7 7 000 0 6666666666666666666 888888888 0 0 8 4 000 44 88 5555555 0 0 22 2 55555 5 0 888 000 0 0 0000000 0 22222 99 7 7 4444444444444444 7 1 0000000000000 66 7 111 888 7 0 4 2222222 22 7 7 888888888 7 7 7 7 7 7 22 7 7 7 888 6 222 7 222 7 7 3 7 88 777777777777 55 000 7 0 0 66666666666666 0 00 666666666 8 6 88 00 888888888888888888888888 88 5 88 3 3 3 3 333 777777777777777777777777777777777 0 888 0 888 0 88 0 0 88 22 88 0 5 222 8 66666 0 000000000 0 888888888 8 444 0 666 8 6 00 0 77777777777777 8 000 0 66 0 0 66 0 00 44444444 00 0 66 0 888 88 00 0 222222 8 0000 888888888888888888 6 8 555 88 8 000000 88 0 44 00000 0 6 4 000 7 7 66666666 4 55 3 7 7 7 000000000000000000 7 0 6666666666666666 1 9 0 7 0 77777 2222 7 7 7 22 7
consensus : AGGGTTGGCAAAATGCC--GGCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATA----C-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA-TGCCGGGCAAA-TACT-G-GTCA-ATTG---AATCAAC----CACAATGGAA-T-TT--ATATATT-T-AACTGTTCCTTTGGTTAGTTTT--AA--AC--TA----TACTG-GTCA--ATA---GATTT-TAT--T-CTT--AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TAT-GA-GT--TT-TAAGCTT-CTTTTTTTT-TCACAC-TTT--AAT-TTA-A-TTNN-TTACA-CA--------T--AT-T----TTTAGTGGGTG-T-TTTGT-AA-TTGTTGGCTGG-ACACTTCNAAATAAAGTTTTN--A-G-AGTCTTAGCAC-TTTACAACTGTT-T---GGC-AGTC--GAGGCAATGTT-GC-AGTGGTCTT---T-CAC-TCTTTGTC---AAC--AACAC-TGA-AGA--AATTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGT-GTAGGTCAATA-ACAGTGATTAT-TGAC-CAA--AATT-TG-T-CTTTA---CTG-C-T-GTAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGCTCAT-GTCATACTTGA-CACCC-CTCT-TTTTCC-TTTCAAC-TT--CT--A-T-TTT--GGGGTGGAA--CAG-A-A-ATC-AT-TTGTGAA----TGATT-TTT-ATTG--CTTG-AAT-----CTCTGTTTTATGTCTGT--CTAAC---CAC-CCTG-A-ATTGGACA--GTNTTCTTG--AAACTT-GT-CGT-TTTAACG--ATTTATAN--CCA-AACA----TA----G-CG-----GTCTTCT-TATAACT-TGACCAGGT-NGCA-CC--AT-G-CAC-AGGTAGGAAT--TAT-ACCAGTGANG-TATGTTTTA--CC-TGTATTATTAAATT-GTTT-AAAATT-TTTTTTTGT-AATCT-TNAATTTGTTGTAT-GGAGG-T--AA-AGT-AAAA-TATTCAACT---GT-TAAAAATGTTTCAGC-CTAGGA-TTTAATCCTG-TG--AATAA---T--TGATT--TAA-TCAATTT-TA--ATGT-TAA--TACAA--T-G-ATAAAGAAT-TATTTTAGA-TTT-AC--------TTTGATTTCACA-TTTTG-AATTGTTGAA-G--C-TATA-AA-TTTNATT-----TA-AAAG-TTCA---A-TTGACCAGTATT-TGCCGGTATTTGCC-ACT-TGAG-T-CT------------------TA-TTTGC-CA---GT--------C-CGGTAAATACCGGTAAA-TGCCGG-CGGT--AA-T--ACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
Reference ( gi|1 ) : AGGGTTGGCAAAATGCC--G-CATTTATCC-ATATT-TTACA-TGCCAGTTGGCAA-ATA----C-CGGT---ATTTACCGGTAAATTC-C--A-GTAAAATGCCGGGCAAAATACTTGCGTCA-ATTG---A-TAAAC----CACTCTGGAA-T-TT--ATATATT-TTAACT-TTCTTTTGGTTAGTTTT--AA--AC--TA----CACTG-GTCA--A-A---GATTT-TAT--T-CTT--AAGGATTGAAGTTATTCC-TAT-TTAGTACTGAAT---TAT-GA-GT--TT-TAAGCTTCCTCTTTTTT-TCACA--TTT--AAT-TTA-A-TTAT-TTACA-CA--------T--AT-T----TTTAGT-AGTG-T-TTTGT-AA-TTGTTTGCTAA-ACACTTCAAAATAAAGTTATT--A-G-AGTCTTAGCAC-TTTACAACTGTT-T---GGC-AGTCCAAAGGCA-TCTT-GC-AGTGGTC-T---T-CAC-TCTTTG-C---AAC--AACAC-TGA-AGA--ATTTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGTTGTAGGTCAATA-ACAGTGATTAT-TGACACAA--AATT-TG-T-CTTTC---CTG-C-T-GTAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATTGCTCGA-GTCATACTTGA-CACCC-C-CT-TTTTCC-TTGCAAC-TT--CT--A-T-TT---GGGGTGGAA--CAG-A-A-ATC-AT-TTGTAAA----TAATT-TTT-ATTG--CTTG-AGT-----CTCTGTTATATGTCTGT--CTAACTCTTAC-CATGAA-ATTGGACA--GTGTTCTTG--AAACTT-GT-TGT-TTTAACA--ATTTATAC--CCATAACA----TATACTATTA-----GT-TTCT-TATAACT-TGACCAGGTGTGCA-CC--AT-G-CACAAGGTAGTAAT--TAT-ACCAGTGATG-TATGTTTTA--AC-TGTATTATCAAATT-GTTTAAAAATT-TTTTTTTGT-AATCT-TAATTTTGTTGTA--GGAGG-T--AA-AGTCAAAA-TATTCAACT---GT-TAAAA-TGTTTCAGC-CTAGGA-TTTAATCCTG-TG--AATAA---T--TGATT--TAA-TCAATTT-TA--ATGT-TAA--TATAA--T-G-ATAAAGAAT-TAATTTATA-TTT-AC--------TTCGATTTTACATTTTTG-AATTGTTGAA-G--C-TATA-AA-TTTAATT-----TA-AAAG-TTCA---A-TTGACCAGTATT-GCCCGGTATTTGCC-ACT-TGAG-T-CT------------------TA-TTTGC-CA---GT--------C-CGGTAAATACCGGTAAATTGCCGG-CGGT--AA-T--ACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|3 : AGGGTTGGCAAAATGCC--GGCAGG-ATGC-CTAAG-TC-CA-TGC-AG--GGCAA-AT-----C-CG-T---ATT-ACCG-TAA-TTC-C---------------GGCAAA-TACT-G-GTCA-ATTA---A-TGAACTCAACACACTGGAA-T-T-----ATATTATTAAGG-TC---TTGG--AGTCTTCTAA--CC--TA----TACTG-GCCACTA-A---A---T-TAT--T-GCT--AAGA---GAAGTTA---C-TAT-TTA----TGAATAGATAT-AG-TT--TT-TAAGCTT-------TTT-TCACA--CT---AA----A-A-TTAT-TTACA-CA-----------A--T----TTCAG--GGTG---TTTGT-AA-TTG-TGGCTGGCACACACCAAGAGAAA
gi|2 : GGTTGGCAAAATGCCTTG-CATTTATTCGATATT-TTCCAATGACAGT-GGCAACATA----C--AGT---ATTTACTG-TAAATTC-CCTATGTAAA-TGCCG--CAAA-TAGCTG-GTCAGATTG---AATCAAC----CACAATGGAAGT-TT--ATATATT-T-AACTGTTCTTTGAGTTAGTTTT--TA--AC--TAGATATACTG-GTCA--ATA---GATTT-TATGCT-CTT--CAG-ATTGAAGTTATTCCCTAT-TTA--ACTGA-----TAT-GAAGT--TT-TAAGCCCCTTTTATTTT-TCACAC-TTT--AAT-T-A-A-TTCA-TTACA-CAAGTCCAATT--AT-TG---TTTAGTGAGTGCT-TTTGT-AA-TTGTTGGCTGG-ACACTCTAA--TAAAATTTTT--AAG-AGTTTTAGCAC-TTTACAACTGTT-TTTGGGC-AGTC--GAGGCAATGTT-GCCAGTGGTC-TATTC-CAC-TCTTTGTC---AAC--AACAC-TGA-AGA--AATTCAAAA--TAGGGATG-TT-----GGA-----TT--CATGCTGA-ATTATG-TGTAGGTTAATA-ACAGTGATTAA-TATGACAA--CATT-TG-T-C-TTA---CTGTC-T-G--AAT-G-TCAATTGGAGGGG-TTGAAG-CA-T-ACCATAGCTC-A-TTCATACTTGA-CACCC-CTCT-TTTTCC-TTTCAAC-TT--CT--A-TATT-----GGTGGAA--C-G-A-A-ATCAAT-TTGTGAT----TA----TTT-ATTGCTCTTG-A-T-----C-CTGGTTTATGTCTGT--CTAAC---CAC-CCTG-A-AT--GATG--G-GTT-TCG--AAACTT-GT-TGT-TTTAACA--ATTTATAC--C---AACA----TA------TG-----GTCTTCT-TGTGAAT-TGACCAGGT-TGCA-CCTGAT-G-CAC-AGGTAGGAATGATAT-ACCAGTGATG-TATGTTTTA--CCTTGTATTATT-AATT-GCTTAGAA--T-TTTTTTTAT-AATCT-TTA-TTTGTTGTA--GGAGGTT--AA-AG---AAA-T-TTCAAAC---GTGTAAAA-TGTTTCAGCTCTAGAATTTTAACCCTG-TGT-AATAATTGT--TGATTTATAA-TCA--TT-TA--ATGTGTAA--TACAA--T-GTATAAAGAAT-TAATTT-TAGTTT-AC--------TTTGATTTCACA--TTTG-AATTGTTGAACG--CTTATACAATTTTACTT-----TACAAAGTTTCA---A-TTTACCA-----------GTATTTGCCGACT-TGAG-T-CT------------------TA-TTTGC-C----GT--------C-C-GTAAGTcgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcacgacactgggagacgataccaatggatgcttctggatcagtgatatgaggtaaaaatgatgacacacaattgtgtacgcttgaatagtatggagggttgaagccacgaccaagccatgtcatacttgacaccctcttttccatcactcccatgggtgtaaccagaaaatcatttatcaacaggtgactattattgcttgatctctgtagtcttctaacaccctgaattgagttcctttgaatatggtccctctataacttgaccagggcaacctgacgcacggtacattatgaccagtgagagtttaccactgtatttcatgttaacatgttgtcctcttgaatctgcgtgcgaggtacagtgacgactattcaactgttaaaaatgttacagcctaggatttaatctgtgaataattgatttaatcaattttaatgttaatacaatgataaagaatatttagattacttgatttcacttttgaattgttgaagctataaatttactttaaaagttcaattgaccagtatttgccggtattgccacttgagtcttatttgccatcggtacatacggtaaaaccggcggtaaatacctaggggctggaatttaccgcccaaccctg
gi|5 : GGTTGGCAAAATGCC--GGCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATA----C-CGGT---ATTTACCGGTAAAT---------------GCCGG-CAAA-TACT-G-GTCA-ATTG---AATCAAC----CACAATGGAA-T-TT--ATATATT-T-AACT-GTTCTTTGGTTAGTTTT--AA---C--TA----CACTG-GTCA--ATA---CATTT-TAT--T-CTT--AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TAT-GA-GT--TT-TCAGGTT-----TTTTT-TCACAC-TTT--AAT-TCA-A-TTTA-TTACATCA--------TT-AT-T----TTTAGTGAGT-----TTGT-AAATTGTT-GCTGG-ACACTTCTAAATAAAGTTTTA--A-GCAG-CTTAGCAC-TT-ACAACTGTT-T---G-C-AGTC---AAGCA-TGTT-GC-AGTGGTCCT---T-CAC-TCTTTGTC---AAC--AACAC-TGA-AGA--AATTCCAA---T-GGGATGTTT-----GGA-----TTT-CATGCTGA-A-TATGC-GTAGGTCAATA-ACA-TGATTAT--GAC-CAA--AATT-TG-T-CTT-A---CTG-C-T-GTAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGCTCAT-GTCATACTTGA-CACCC-CTCT-TTTTCC-TTTCAAC-TTC-CT--ATT-TT---GGGGTGGAA--CAG-A-ATATC-AT-TTGT-GA----TA--T-TTT-ATTG--CTTT-GAT-----CTCTGTT-TATGTCTGT--CTAACg
gi|6 : GGTTGGCAAAATGCCT-G-CATTTATCG-ATATT-TTCCA-TGACAGT-GGCAA-ATA----CATGGTTATGTTTACCG-TAAATTCAC--A-GTAAAATGC--GGCAAA-TACT-G-GTCA-ATTGGAAA-TCAAC----CAC-ATGGAA-TATT--ATATATT-T-AACT-GTTCTTTGGTTAGTTTT--AACTATA-TA----TACTGCGTCA--A-ACTAGATTTATAT--TGCTT--CAG-ATTGAAGTTATTCC-TATGTTA--ACTGAAT---TAT-GA-GTATTT-TAAGC---CTTTTTTTTATCACAC-TTT--AATATTA-A-TTCA-TTACA-CA--------CCAAT-TAAATTTTAG---GTG-T-TTTGT-AA-TTGTTGGCTGG-ACACTTCTAAATAAAATTTTA--A-G-AGTTTTAGCAC--TTACAACTGTT-T---GGC-AGTC--GAGGCA-TGTT-GC-AGTGGTCTT---T-CAC-TCTTTGTC---AAC--AACAC-TGA-AGA--AATTCCAAA--T-GGGATGTTT-----GGAT----TT--CATGCTGA-A-TATG-TGTAGGTTAATA-ACAGTGATT
gi|4 : CAAAATGCA--GGCATTTATCC-ATATTGTTCCA-TGCCAGT-GGCAA--TA----C-CGGT---ATT-AC-GGTAA-TTC-C--A-GTAAA--GCCGG-CAAATT-CTGGT-TCA-ACTG---AATTAAC----CACATGGGAA-T-TTTAGTATATT-T-AACTGTTCTTTTAG--------------ACCATA----CACTG-GTCA--A-ATA-GATTTGTAT--T-CTTTAAAAGATTGAAGTTATT-C-TAT-TTAATTCTAGAT---TATGGA-GT--TTGTAAGCT-----TTTTTT-TCACAACTAT--AA--TTA-A-TTATATTACA-TACAAT----T--ATAT----TTTAG--GGTG-TGTTTGTAAA-TTGTGAGCTGG-ACACTT--AATTAAAGTT-TTGAA-G-AGCCTTAGTACTTTTACAGCTGTTGG---GGCAAGTC--AAGGCA-TGTTAGC-AGTGGTCTT---T-CACATCTTTG-TCAGAACAAAACACTTGA-AGA--A-TTCCAAA--T--GGATGTTTTGGGGGGAAGTTTTT--CA-GCTGAGA-TATGT--TAGGTCAATACACAGTGA--AT-TGAGCCAACCAATT-TGCT-CTGTA---CTG-C-TGGTAAAT-GAT--ATTGGA-GGG-TTGAAG-CA-T-ACCATAGCTCAT-GTCA-ACTTGA-CACCC-A-CTCTTTTCC-TT-CAAC-TC--CT--A-T-TTTG-GGAGTGGAAAGCAGAA-A-ATT-ATATTG--------TGATT-TTTAATTG--CTTG-GAT-----CTCTGTT-TATGTCTGTTCCTAAC---CAC-CTTG-A-ATTGACCA--GTGTTCTTG--AAACTTGGT-TGTGTTTAACGACATTTAAAT--ACATAATA----TA----GGTG-----GTCTTCT-TAAATCT-TGACCAGGTCAGAA-CC--ATGG-CAC-AGGTAG-AAT--TAT-ACCAGTGATGTTATG-TTTA--CC-TGT-TTATT-AATT-GTTT----ATTATTTTTTTGTAAATCTATAA-TTTGTTGTGT-AGAGG-T--
gi|14 : AAAACCCT--G--ATTTATCC-ATATT-TCCCA-TGCC-TTCGGTAA-ATG----C-CAGC---Atagaaggagcttgtctcgaattttgtaaactgt
gi|5 : CAATTGACCA-GTATTTGC-CGGC---ATTTACCGGTAAATAC-C--G-GTAaatcctggtcagctgaattgacca
gi|11 : ggttggcaaaatgccggcatttatccatattttccatgccagtggcaaa--TA----TACTG-GTCA--ATA---AATTT-TCT--T-CTT--AAG-ATTGAAGTTATTCC-TA--TCATTACTGAAT---TAT-GA-GT--TT-GAAG---CCTTTTTTTT-TTACA--CTTTAAAT-TTACATTTAT-TTAaatcaaccacaatggaatttatatatttaactgttctttggttagttttaactacactggtcaatacattttattcttaagattgaagttattcctatttatactgaattatgagttttcaggttttttttcacactttaattcaatttattacatcattatttttagtgagtttgtaaattgttgctggacacttctaaataaagttttaagcagcttagcacttacaactgtttgcagtcaagcatgttgcagtggtccttcactctttgtcaacaacactgaagaaattccaatgggatgtttggatttcatgctgaatatgcgtaggtcaataacatgattatgaccaaaatttgtcttactgctgtaaatgtattggagggttgaagccataccatagctcatgtcatacttgacacccctctttttcctttcaacttcctattttggggtggaacagaatatcatttgtgatattttattgctttgatctctgtttatgtctgtctaac
gi|10 : C-GGTC--AAGGCAATGTT-GC-AGTGGTC-T---TTCACCTCTTTG-TCA-AAC--AACAC-TGA-AGA--ATT-CCAAAATT-GGGATGTTT-----G-A-----TTTTCATGCTAA-T-TATGTGTTAGGTCAATA-ACAGTGATTA--TGAC-CAA--AA-T-TG-T--TTTCTTACTG-CGT-GTAAAT-G-T--ATTGGA-GGGTTTGAAGCCATT-ACCATAGCTTCATGTCATACTTGACCACCC-a
gi|16 : -C---AAC--AACAC-TGA-AGA------------------ATGTTT-----GGAT----TT--CAAGCTGA-A-T
gi|3 : gtAC--GACAC-TGGGAGACGATACC--AA--T-GG-ATGCTTCT---GGA-----TC--AGTG-----A-TATG----AGGTAAA-----AATGAT-----GACACAC--AATTGTG-TAC---------G-C-T--TGAATAG-T--AT-GGA-GGG-TTGAAGCCA-CGACCAA-GC-CAT-GTCATACTTGA-CACCC-T-CT-TTTCCA-TC---AC-TC--CC--A-T-------GGGTGTAAC-CAGAA-A-ATC-AT-TTATCAACAGGTGACT-ATT-ATTG--CTTG-A-T-----CTCTG-TA---GTCT-T--CTAAC----AC-CCTG-A-ATTG---A--GTTCCTTTG--AA
gi|15 : agggttggcaaaatgccggcaggatgcctaagtccatgcagggcaaatccgtattaccgtaattccggcaaatactggtcaattaatgaactcaacacactggaattatattattaaggtcttggagtcttctaacctatactggccactaaattattgctaagagaagttactatttatgaatagatatagtttttaagcttttttcacactaaaattatttacacaatttcagggtgtttgtaattgtggctggcacacaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcTGATTATATGAC-CAA--AATT-TG-T-CTTGC---TTG-C-T-GCAAAT-G-T--ATTTGA---G-TTGAAACCA-T-tatggtccctctataacttgaccagggcaacctgacgcacggtacattatgaccagtgagagtttaccactgtatttcatgttaacatgttgtcctcttgaatctgcgtgcgaggtacagtgacgactattcaactgttaaaaatgttacagcctaggatttaatctgtgaataattgatttaatcaattttaatgttaatacaatgataaagaatatttagattacttgatttcacttttgaattgttgaagctataaatttactttaaaagttcaattgaccagtatttgccggtattgccacttgagtcttatttgccatcggtacatacggtaaaaccggcggtaaatacctaggggctggaatttaccgcccaaccctg
gi|13 : GCTCAT-GTCATACTTGA-CACCC-CTCC-TTTTCC-TTTCAACTTT--CT--A-T-TTTTAGGGTTAGAA--CAG-G-A-
gi|7 : aACTTGA-TACCCAT-CT-ATTTACGTTTCA-C-TTGGCTTAG-T-TTTG-GGGGTAGAAA-CAG-GGA-AGT-AT-TATTGAA----T--TTATTT-GTTA--ATTGTAATTCATACCCTACTTTATGTCTGTA-CTAACGAGCACGCCTGAATGCTTGACATAGTTTTCTTGTAAGACCT-ATGCGT-TT--GTG--GTTTGTAAAGCCA-AACAACTTTATGATACCAAATGGGTCTTCT-TA--GCTACGGCCATGTGGGCAACC--AT-G-CAC--TGTAAAAGT--TAT-ACCAGTGGAG-GCTGTTTGA--CC-TGT--TATTAAATTTGTTTCA---TT-TTTTTTTTT-A-TCT-TAATT--AATGTATTGGAGG-TTTAA-A-TTAAAG-CATTCAACT---GT-TAAAT-GGTTTCAAC-CTAAGA-TTTAATCCTG-TGCTAAT-----T--TGATT--TAA-TCAATTT-T---ATGT---A--TACAAAGT-A-AT-AAGAAT-TATTTTAGATTTT-ACCCGACTCTTTCGATTTgaatattttg
gi|3 : TG-----GT-CCCTCTATAACT-TGACCAGG---GCA-AC--CT-GACGCACGGTAC--AT--TATGACCAGTGAGA----GTTT-ACCAC-TGTATT-TCA---T-GTT--AACATG-TT-----GT-CCTCT-TGAATCTGC-GTG--CGAGG-T--AC-AGTGACGACTATTCAACT---GT-TAAAAATGTTACAGC-CTAGGA-TTTAATC-TG-TG--AATAA---T--TGATT--TAA-TCAATTT-TA--ATGT-TAA--TACAA--T-G-ATAAAGAAT---ATTTAGA-TT--AC--------TT-GATTTCAC--TTTTG-AATTGTTGAA-G--C-TATA-AA-TTTACTT-----TA-AAAG-TTCA---A-TTGACCAGTATT-TGCCGGTA-TTGCC-ACT-TGAG-T-CT------------------TA-TTTGC-CA-------------T-CGGTACATA-CGGTAAA--ACCGG-CGGTA-AA-T--ACCTAGGG-GCT--GGAAT-TTACCGCCCAACCCTga
gi|8 : agggttggcaaaatgccggcaggatgcctaagtccatgcagggcaaatccgtattaccgtaattccggcaaatactggtcaattaatgaactcaacacactggaattatattattaaggtcttggagtcttctaacctatactggccactaaattattgctaagagaagttactatttatgaatagatatagtttttaagcttttttcacactaaaattatttacacaatttcagggtgtttgtaattgtggctggcacacaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcacgacactgggagacgataccaatggatgcttctggatcagtgatatgaggtaaaaatgatgacacacaattgtgtacgcttgaatagtatggagggttgaagccacgaccaagccatgtcatacttgacaccctcttttccatcactcccatgggtgtaaccagaaaatcatttatcaacaggtgactattattgcttgatctctgtagtcttctaacaccctgaattgagttcctttgaataG-TATGTTT-A--CC-TGTAG-ATTAATTT-GTTCGTAA----TTTTTTTGT-AATCT-TTTATTTGT-GTA--GGAGG-T--TATAGT-GAAA-TATTCAACT---GT-TAAAA-GTTTTCAGCGCTAGGA-TTTAA-CCTGTTG--GATAA---T--TTATT--TAA-TCAATTTCTAAGATGT-TAAATCACAA--TCG-ATATATAGTGTCTTTTAGA-TTTCACT-------TTTGATTTTAC---TTTG--ATTGTTG-A-G--C-TAT--AA-TTT-ACT-----TA-ACAGTTTCA---A-TTTAC-------------GTATTTG-C-ACT-TGAG-T-CT------------------TATTTTGCACA---G------------------TACCGGTAA--TGCCGG-T-GT--AA-T--A-C-AGGG-G-T--GGAAT-g
gi|9 : A-AGTCAAA--TATTCAACTACTGT-TAAAAATGTTTCAGC-CTAGGA-TTTA-TCCTG-TG--AATCA---TGTTGATT--TAAATCACATT-TA--ATGT-TAA--TACAA--T-G-ATAAAGAAT-TATTTTAGA--TT-AT--------CTTGA-TTTACACTTTTGCAATTGTTGAA-GCTC-TATA-AA-TTTTACT-----TT-AAAG-TTCA---ATTTGA-CAGTA----------ATTTGCCAACT-TGAGTT-CT------------------TA-TTTG--CA---GT--------C-CGGTAAATA-CGGTAAATT-CCGG-CGGT--AA-A--ACC-AGGGCG-TGGGGAATCTTACCGCCCAACCCT
gi|5 : G-AACAGTTAAA-T--A-TATA-AA-TTCCATTGTGGTTG-A----TTCA---A-TTGACCAGTATT-TGCCGGCATTTACC-G-G-TAAA-TACCGG----------------TA-TTTGC-CACTGGC--------A-TGGAAAATATGGATAAA-TGCCGG-Cg
gi|3 : ggttggcaaaatAG-TTCATTAA-TTGACCAGTATT-TGCCGGAATTtttggttagttttaactacactggtcaatacattttattcttaagattgaagttattcctatttatactgaattatgagttttcaggttttttttcacactttaattcaatttattacatcattatttttagtgagtttgtaaattgttgctggacacttctaaataaagttttaagcagcttagcacttacaactgtttgcagtcaagcatgttgcagtggtccttcactctttgtcaacaacactgaagaaattccaatgggatgtttggatttcatgctgaatatgcgtaggtcaataacatgattatgaccaaaatttgtcttactgctgtaaatgtattggagggttgaagccataccatagctcatgtcatacttgacacccctctttttcctttcaacttcctattttggggtggaacagaatatcatttgtgatattttattgctttgatctctgtttatgtctgtctaac
gi|6 : agggttggcaaaatgccggcaggatgcctaagtccatgcagggcaaatccgtattaccgt-TCCA---A-TTGACCAGTATTTGCC--GCATTT--T-ACTGTGAA-T-TTACGGTAAACATAACCATGTA-TTTGC-CACT-GT--------CATGGAAAATATCGATAAA-TGCAGG-Ccaacacactggaattatattattaaggtcttggagtcttctaacctatactggccactaaattattgctaagagaagttactatttatgaatagatatagtttttaagcttttttcacactaaaattatttacacaatttcagggtgtttgtaattgtggctggcacacaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcacgacactgggagacgataccaatggatgcttctggatcagtgatatgaggtaaaaatgatgacacacaattgtgtacgcttgaatagtatggagggttgaagccacgaccaagccatgtcatacttgacaccctcttttccatcactcccatgggtgtaaccagaaaatcatttatcaacaggtgactattattgcttgatctctgtagtcttctaacaccctgaattgagttcctttgaatatggtccctctataacttgaccagggcaacctgacgcacggtacattatgaccagtgagagtttaccactgtatttcatgttaacatgttgtcctcttgaatctgcgtgcgaggtacagtgacgactattcaactgttaaaaatgttacagcctaggatttaatctgtgaataattgatttaatcaattttaatgttaatacaatgataaagaatatttagattacttgatttcacttttgaattgttgaagctataaatttactttaaaagttcaattgaccagtatttgccggtattgccacttgagtcttatttgccatcggtacatacggtaaaaccggcggtaaatacctaggggctggaatttaccgcccaaccctg
gi|12 : ggttggcaaaatCT-CGGG-C-CT------------------TG-TTTAN-NN---NN--------N-NNNNNNNNNNNNNNNNNNN-CCGG-CTGT--AAAT--ACC-AGGG-G-T--GGAAT-TTACCCTCCAACCCTaatcaaccacatggaatattatatatttaactgttctttggttagttttaactatatatactgcgtcaaactagatttatattgcttcagattgaagttattcctatgttaactgaattatgagtattttaagccttttttttatcacactttaatattaattcattacacaccaattaaattttaggtgttttgtaattgttggctggacacttctaaataaaattttaagagttttagcacttacaactgtttggcagtcgaggcatgttgcagtggtctttcactctttgtcaacaacactgaagaaattccaaatgggatgtttggatttcatgctgaatatgtgtaggttaataacagtgatt
gi|5 : TGC-CA---GTGGCAAATAC-CGGTATTTACCGGTAAA-TGCCGG-CA----AA-T--AC
gi|2 : ggttggcaaaatgccggcatttatccatattttccaA---GT--------C--GGCAAATACTGGTAAATTGtggtcaattgaatcaaccacaatggaatttatatatttaactgttctttggttagttttaactacactggtcaatacattttattcttaagattgaagttattcctatttatactgaattatgagttttcaggttttttttcacactttaattcaatttattacatcattatttttagtgagtttgtaaattgttgctggacacttctaaataaagttttaagcagcttagcacttacaactgtttgcagtcaagcatgttgcagtggtccttcactctttgtcaacaacactgaagaaattccaatgggatgtttggatttcatgctgaatatgcgtaggtcaataacatgattatgaccaaaatttgtcttactgctgtaaatgtattggagggttgaagccataccatagctcatgtcatacttgacacccctctttttcctttcaacttcctattttggggtggaacagaatatcatttgtgatattttattgctttgatctctgtttatgtctgtctaac
gi|5 : ggttggcaaaatgccttgcatttattcgatattttccaatgacagtggcaacatacagtatttactgtaaattccctatgtaaatgccgcaaatagctggtcagattgaatcaaccacaatggaagtttatatatttaactgttctttgagttagtttttaactagatatactggtcaatagattttatgctcttcagattgaagttattccctatttaactgatatgaagttttaagccccttttatttttcacactttaattaattcattacacaagtccaattattgtttagtgagtgcttttgtaattgttggctggacactctaataaaatttttaagagttttagcactttacaactgtttttgggcagtcgaggcaatgttgccagtggtctattccactctttgtcaacaacactgaagaaattcaaaatagggatgttggattcatgctgaattatgtgtaggttaataacagtgattaatatgacaacatttgtcttactgtctgaatgtcaattggaggggttgaagcataccatagctcattcatacttgacacccctctttttcctttcaacttctatattggtggaacgaaatcaatttgtgattatttattgctcttgatcctggtttatgtctgtctaaccaccctgaatgatgggtttcgaaacttgttgttttaacaatttataccaacatatggtcttcttgtgaattgaccaggttgcacctgatgcacaggtaggaatgatataccagtgatgtatgttttaccttgtattattaattgcttagaattttttttataatctttatttgttgtaggaggttaaagaaatttcaaacgtgtaaaatgtttcagctctagaattttaaccctgtgtaataattgttgatttataatcatttaatgtgtaatacaatgtataaagaattaattttagtttactttgatttcacatttgaattgttgaacgcttatacaattttactttacaaagttt--------C-CGGTAAATGCCGGCAAA-TACTGGTCAATTGAA-TCAACC-A-CA-A-T--GGAAT-TTAtgagtcttatttgccgtccgtaagtg
gi|17 : ggttggcaaaatgccggcatttatccatattttccatgccagtggcaaataccggtattta-AGGG-G-T--GGAAT-TTACCGCCCAACCCTtatatttaactgttctttggttagttttaactacactggtcaatacattttattcttaagattgaagttattcctatttatactgaattatgagttttcaggttttttttcacactttaattcaatttattacatcattatttttagtgagtttgtaaattgttgctggacacttctaaataaagttttaagcagcttagcacttacaactgtttgcagtcaagcatgttgcagtggtccttcactctttgtcaacaacactgaagaaattccaatgggatgtttggatttcatgctgaatatgcgtaggtcaataacatgattatgaccaaaatttgtcttactgctgtaaatgtattggagggttgaagccataccatagctcatgtcatacttgacacccctctttttcctttcaacttcctattttggggtggaacagaatatcatttgtgatattttattgctttgatctctgtttatgtctgtctaac
Alignments
lowQualScore : 111 1 1 55555555555555555 111 1 111 2 111 1111 11 1 111 22 111 3333333 111 666666666666666666 111 1 1 11 111 2 111 11111 22222 1111 111 111 11111 11 1111 11 111 33333333 1 222222222 2 11 1111111 1111111111 11 11 1111111 999999999999999999999999999999 111 11 11 11 11 22222222 222 11111 111 1 11 111111 333 11 22222222222 11 1 1111
lowQualScore : 6 5 5 0 5 77 77 1 88 0 000 2 1 5 1 5 22222222222222222 5 5 5 5 5 5 000 77 5 1 222 99 6 8 3 99 222 5 2222 77 5 33 1 77 5 000 5 5 5 33 000 5 5 77 5 7777777 5 5 5 5 000 5 777 6 222222222222222222 55 666 3 6 1 3 3 1 6 8 3 88 444 6 6 999 3 6 6 99 1 6 6 5 66 66 5 5 777 333 5 5 99999 99999 5 0 5 5 2222 5 55 444 444 77 5 5 22222 5 5 55 5 5 77 5 5 4 5 5 5 5 5 0 5 1 5 33 77 1 0000 5 5 99 222 5 6 6 22222222 66 3 6 99 000000000 1 2 55 8888888 8 8 8888888888 1 0 11 0 8 22 8 8888888 000000000000000000000000000000 55 9 8 999 8 8 11 8 33 66 11 8 1 99 7 3 99 6 7 7 6 1 55555555 6 3 888 55 555 6 99 6 00000 111 3 6 3 6 1 6 55 3 111111 99 6 3 6 99 6 99 99 6 6 6 6 3 7 6 3 8 8 444 8 0 88 11 8 8 0 1 8 8 8 8 8 33333333333 33 6 6 66 11 2 4 0 2 4444 8 8 6 6 6 99 6
lowQualScore : . . . . . .. .. . .. . ... . . . . . ................. . . . . . . ... .. . . ... .. . . . .. ... . .... .. . .. . .. . ... . . . .. ... . . .. . ....... . . . . ... . ... . .................. .. ... . . . . . . . . . .. ... . . ... . . . .. . . . . .. .. . . ... ... . . ..... ..... . . . . .... . .. ... ... .. . . ..... . . .. . . .. . . . . . . . . . . . . .. .. . .... . . .. ... . . . ........ .. . . .. ......... . . .. ....... . . .......... . . .. . . .. . ....... .............................. .. . . ... . . .. . .. .. .. . . .. . . .. . . . . . ........ . . ... .. ... . .. . ..... ... . . . . . . .. . ...... .. . . . .. . .. .. . . . . . . . . . . ... . . .. .. . . . . . . . . . ........... .. . . .. .. . . . . .... . . . . . .. .
lowQualScore : 7 7 7 1 7 11 11 4 77 7 000 0 4 0 4 7 00000000000000000 7 7 7 7 7 7 000 99 7 5 555 22 7 7 2 22 333 7 1111 99 7 66 4 99 7 000 7 7 7 44 000 7 7 99 7 1111111 7 7 7 7 777 7 777 7 000000000000000000 77 555 3 7 7 3 5 0 0 0 8 66 000 7 7 888 7 7 7 22 7 7 7 7 99 99 0 0 444 111 0 6 44444 44444 0 4 0 0 3333 7 11 333 333 99 7 7 00000 7 7 99 7 7 99 7 7 3 7 7 7 0 0 1 7 4 7 66 99 7 0000 7 7 33 444 7 7 7 88888888 88 3 7 22 222222222 7 0 88 9999999 0 0 8888888888 0 8 00 8 0 66 0 8888888 888888888888888888888888888888 88 0 0 888 0 0 00 0 66 44 00 0 0 88 3 2 22 7 3 3 7 7 33333333 7 2 000 22 777 7 22 7 88888 777 5 7 3 7 7 7 88 2 888888 22 7 2 7 22 7 22 22 7 7 7 7 5 3 7 8 0 0 000 0 8 88 00 0 0 8 0 0 0 0 0 0 66666666666 00 7 7 88 00 8 3 7 2 0000 0 0 7 7 7 22 7
consensus : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA-TGCCGGGCAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACANTGGAA-T-TT--ATATATTT-AACTGTTC-TTTGGTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TAAGCTTCTT-TT-TTTT-TCACA-CTTT-AAT-TTA-ATTNN-TTACA-CA--------T--AT-T---TTTAGTGGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAGTTTTNAAG-AGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCA-C-TCTTTGTC-A--ACAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT-CATGCTGA-A-TATGT-G-TAGGTCAATA-ACAGTGATT-AT-TGA-C-CAA--AATT-TG-TCT--TTACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTT--GGG-G-TGGAA--CAG-A-A-ATC-AT-TTGTGAA----TGATT-TTT-ATTG--CTTG-GAT-----CTCTG-TTTATGTCTGT--CTAAC---C---AC-CCTGAA-T--TGGACA--GTTTTCTTG--AAACTT-GT-TGT-TTTAACG--ATTTATAN--CCATAACA---------TA-GC-A-T-GGTCTTCTTATAACT-TGACCAGGT-G-G-CA-CC--AT-GCACA-GGTAGGAAT--TAT-ACCAGTGATG-TATGTTTTAC--C-TGTATTATTAAATT-GTTT-AAAATT-TTTTTTTGT-AATCTTNAATTTGTTGTAC-GGAGG-T--AA-AGT-GA--AATATTCAACT---GTTAAAAATG-TTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGATTT-ACTTT-GATTT-CACA-TTTTG-AATTGTTGAA-G--C-TATA-AATTTTA-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAA-TGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
Reference ( family-51 ) : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA-TGCCGGGCAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACAATGGAA-T-TT--ATATATTT-AACTGTTCCTTTGGTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TAAGCTTCTT-TT-TTTT-TCACA-CTTT-AAT-TTA-ATTNN-TTACA-CA--------T--AT-T---TTTAGTGGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCNAAATAAAGTTTTNA-G-AGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTC--GAGGCAATGTT-GC-AGTGGTCT--TTCA-C-TCTTTGTC-A--ACAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT-CATGCTGA-A-TATGT-G-TAGGTCAATA-ACAGTGATT-AT-TGA-C-CAA--AATT-TG-TCT--TTACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTT--GGG-G-TGGAA--CAG-A-A-ATC-AT-TTGTGAA----TGATT-TTT-ATTG--CTTG-AAT-----CTCTGTTTTATGTCTGT--CTAAC---C---AC-CCTGAA-T--TGGACA--GTNTTCTTG--AAACTT-GT-CGT-TTTAACG--ATTTATAN--CCA-AACA---------TA-GC-----GGTCTTCTTATAACT-TGACCAGGT-N-G-CA-CC--AT-GCACA-GGTAGGAAT--TAT-ACCAGTGANG-TATGTTTTAC--C-TGTATTATTAAATT-GTTT-AAAATT-TTTTTTTGT-AATCTTNAATTTGTTGTAT-GGAGG-T--AA-AGT-AA--AATATTCAACT---GTTAAAAATG-TTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGATTT-ACTTT-GATTT-CACA-TTTTG-AATTGTTGAA-G--C-TATA-AATTTNA-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAA-TGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|1 : AGGGTTGGCAAAATGCCG--CATTTATCC-ATATT-TTACA-TGCCAGTTGGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAAATGCCGGGCAAAATA-CTTGCGT-CA-AT---TG--A--TAAACCACTCTGGAA-T-TT--ATATATTTTAACT-TTCTTTTGGTTAG--TTTTAA--AC-TA----CAC--TG-GTCAA---AGATTT-TAT--T-CTT---AAGGATTGAAGTTATTCC-TAT-TTAGTACTGAAT---TATG-A-GT--TT-TAAGCTTCCTCTT-TTTT-TCACA--TTT-AAT-TTA-ATTAT-TTACA-CA--------T--AT-T---TTTAGTAG-TG-T-TTTGTAA-TTGTTTGCTAA-ACACTTCAAAATAAAGTTATTA-G-AGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTCCAAAGGCA-TCTT-GC-AGTGGTCT--T-CA-C-TCTTTG-C-A--ACAA--CACT-GA-AGA-ATTTCCAAA--T-GGGATGTTT-----GGA-----TT-CATGCTGA-A-TATGTTG-TAGGTCAATA-ACAGTGATT-AT-TGA-CACAA--AATT-TG-TCT--TTCCTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATTGC-TCGAGTCATACTTGA-CACCC-C-CTTTTTCC-TTGCAAC-TT--CT--ATTT---GGG-G-TGGAA--CAG-A-A-ATC-AT-TTGTAAA----TAATT-TTT-ATTG--CTTG-AGT-----CTCTGTTATATGTCTGT--CTAAC---TCTTAC-CATGAAAT--TGGACA--GTGTTCTTG--AAACTT-GT-TGT-TTTAACA--ATTTATAC--CCATAACA---------TATACTATT-AGT-TTCTTATAACT-TGACCAGGT-GTG-CA-CC--AT-GCACAAGGTAGTAAT--TAT-ACCAGTGATG-TATGTTTTAA--C-TGTATTATCAAATT-GTTTAAAAATT-TTTTTTTGT-AATCTTAATTTTGTTGTA--GGAGG-T--AA-AGTCAA--AATATTCAACT---GTT-AAAATG-TTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TATAA--T-G-ATAAAGAAT-T-AATTTATATTT-ACTTC-GATTT-TACATTTTTG-AATTGTTGAA-G--C-TATA-AATTTAA-TTTA-AAAG-TT-CAA-TTGACCAGTATTGCCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAATTGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|10 : -CG-GTC--AAGGCAATGTT-GC-AGTGGTCT--TTCACC-TCTTTGTCAA--ACAA--CACT-GA-AG--AATTCCAAAATT-GGGATGTTT------GATT---TT-CATGCTAA-T-TATGT-GTTAGGTCAATA-ACAGTGATT-A--TGA-C-CAA--AA-T-TG-TTTTCTTACTG-CGTG-TAAAT-G-T--ATTGGA-GGGTTTGAAGCCATT-ACCATAGCTTCATGTCATACTTGACCACCC-
gi|11 : -TA----TAC--TG-GTCAA--TAAATTT-TCT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-CAT-TACTGAAT---TATG-A-GT--TT-GAAGC--CTT-TT-TTTT-TTACA-CTTTAAAT-TTACATTTA-TT
gi|12 : CTCGGG-CCTTGTTT-AN-NNNNNNNNNNNNNNNNNNNNNN-NNCCGGCTGT-AAATACC-AGGG-G-T--GGAAT-TTACCCTCCAACCCTtaa
gi|13 : AGC-TCATGTCATACTTGA-CACCC-CTCCTTTTCC-TTTCAACTTT--CT--ATTTTTAGGG-T-TAGAA--CAG-G-A-
gi|14 : ATTTATCC-ATATT-TCCCA-TGCC-----------------------TT---CGGTAAATGC-C--A-------------GCAAA-TC-CT-G-GT-CA-GC---TG--AA-TTGACCAgaatattttg
gi|15 : aaaaccctgTGATT-ATATGA-C-CAA--AATT-TG-TCT--TGCTTG-C-TG-CAAAT-G-T--ATTTGA---G-TTGAAACCA-T-
gi|16 : GTC-A--ACAA--CACT-GA-AGA-----------------ATGTTT-----GGAT----TT-CAAGCTGA-A-T
gi|17 : -AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|2 : GGTTGGCAAAATGCCTTGCATTTATTCGATATT-TTCCAATGACAGT-GGCAACATAC--AGT---ATTTACTG-TAAATTC-CCTATGTAAA-TGCCG--CAAA-TAGCT-G-GT-CAGAT---TG--AA-TCAACCACAATGGAAGT-TT--ATATATTT-AACTGTTCTTTGAGTTAG--TTTTTA--AC-TAGATATAC--TG-GTCAA--TAGATTT-TATGCT-CTT---CAG-ATTGAAGTTATTCCCTAT-TTA--ACTGA-----TATG-AAGT--TT-TAAGCCCCTT-TTATTTT-TCACA-CTTT-AAT-T-A-ATTCA-TTACA-CAAGTCCAATT--AT-TG--TTTAGTGAGTGCT-TTTGTAA-TTGTTGGCTGG-ACACT-CTAA-TAAAATTTTTAAG-AGTTTTAGCACTTT-ACAACTGTTTTTGGG-CA-GTC--GAGGCAATGTT-GCCAGTGGTCTATTCCA-C-TCTTTGTC-A--ACAA--CACT-GA-AGA-AATTCAAAA--TAGGGATG-TT-----GGA-----TT-CATGCTGA-ATTATGT-G-TAGGTTAATA-ACAGTGATTAATATGA---CAA--CATT-TG-TC---TTACTGTC-TG---AAT-G-TCAATTGGAGGGG-TTGAAG-CA-T-ACCATAGC-TCAT-TCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATATT----G-G-TGGAA--C-G-A-A-ATCAAT-TTG--------TGATTATTT-ATTGCTCTTG--AT-----C-CTGGTTTATGTCTGT--CTAAC---C---AC-CCTGAA-T----GATG--GGTTTC--G--AAACTT-GT-TGT-TTTAACA--ATTTATAC--C---AACA---------TA--T-----GGTCTTCTTGTGAAT-TGACCAGGT-T-G-CA-CCTGAT-GCACA-GGTAGGAATGATAT-ACCAGTGATG-TATGTTTTAC--CTTGTATTATT-AATT-GCTT-AGAA-T-TTTTTTTAT-AATCTTT-ATTTGTTGTA--GGAGGTT--AA-AG---A--AAT-TTCAAAC---GTGTAAAATG-TTTCAGCTCTAGAATTTTAACCCTGT-GT-AATAATTGT--TGATTTATAA-TCA--TT-TAA--TGTGTAA--TACAA--T-GTATAAAGAAT-TAATTTTAG-TTT-ACTTT-GATTT-CACA--TTTG-AATTGTTGAACG--CTTATACAATTTTACTTTACAAAGTTT-CAA-TTTACCAGTATTTGCCG----------ACTTGAG-TCTTATTT-GC-C-GTCC-GTAAGT
gi|3 : AGGGTTGGCAAAATGCCG-GCAGG-ATGC-CTAAG-T-CCA-TGC-AG--GGCAA-AT-C-CG-T---ATT-ACCG-TAA-TTC-C---------------GGCAAA-TA-CT-G-GT-CA-ATTAATG--AACTCAA-CACACTGGAA---TT--ATATTATT-AA--GGTC--TTGG--AGTCTTCTAA--CC-TA----TAC--TG-GCCAC--TAAA--T-TAT--T-GCT---AAG-A--GAAGTTA---C-TAT-TTA----TGAATAGATATA-G-TT--TT-TAAGC-------T-TTTT-TCACA-C--T-AA----A-ATTAT-TTACA-CA-----------A--T---TTCA--GGGTG---TTTGTAA-TTG-TGGCTGGCACACACCAAGAGAAAg
gi|3 : --ACGA--CACT-GGGAGACGATACCAA---T-GG-ATGCTTCT---GGA-----TC-AGTG-----A-TATG-----AGGTAAA-----AATGAT------GA-CACAC--AATTGTG-T------AC-G-C-T--TGAATAG-T--AT-GGA-GGG-TTGAAGCCA-CGACCA-AGC--CATGTCATACTTGA-CA-CC-CTCTTTTCCA-TC---AC-TC--CC--AT------GG-G-TGTAAC-CAGAA-A-ATC-AT-TTATCAACAGGTGACT-ATT-ATTG--CTTG--AT-----CTCTG---TA-GTCT-T--CTAA----C---AC-CCTGAA-T--TG---A--GTTCCTTTG--AA---T-AT-GGT-CCC-------TCTATAA--CTT-GAC----------CA-G------GG--------CAACC-TGAC--------G-CA-C------------GGTA--CAT--TATGACCAGTGAGA----G-TTTACCAC-TGTATT-TCA---T-G-TT-AACA------TGTTGT-CCTCTTGAATCTG-CGTGC--GAGG-T--AC-AGT-GACGACTATTCAACT---GTTAAAAATG-TTACAGC-CTAGGA-TTTAAT-CTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAA--T-A-TTTAGA-TT-AC-TT-GATTT-CAC--TTTTG-AATTGTTGAA-G--C-TATA-AATTTAC-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTA-TTGCC-ACTTGAG-TCTTATTT-GC-CA--TCGGTACATA-CGGTAAA--ACCGGCGGTAAA-TACCTAGGG-GCT--GGAAT-TTACCGCCCAACCCTcgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcacgacactgggagacgataccaatggatgcttctggatcagtgatatgaggtaaaaatgatgacacacaattgtgtacgcttgaatagtatggagggttgaagccacgaccaagccatgtcatacttgacaccctcttttccatcactcccatgggtgtaaccagaaaatcatttatcaacaggtgactattattgcttgatctctgtagtcttctaacaccctgaattgagttcctttgaatatggtccctctataacttgaccagggcaacctgacgcacggtacattatgaccagtgagagtttaccactgtatttcatgttaacatgttgtcctcttgaatctgcgtgcgaggtacagtgacgactattcaactgttaaaaatgttacagcctaggatttaatctgtgaataattgatttaatcaattttaatgttaatacaatgataaagaatatttagattacttgatttcacttttgaattgttgaagctataaatttactttaaaagttcaattgaccagtatttgccggtattgccacttgagtcttatttgccatcggtacatacggtaaaaccggcggtaaatacctaggggctggaatttaccgcccaaccctg
gi|4 : agggttggcaaaatgccggcaggatgcctaagtccatgcagggcaaatccgtattaccgtaattccggcaaatactggtcaattaatgaactcaacacactggaattatattattaaggtcttggagtcttctaacctatactggccactaaattattgctaagagaagttactatttatgaatagatatagtttttaagcttttttcacactaaaattatttacacaatttcagggtgtttgtaattgtggctggcacacaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcCAAAATGCAG-GCATTTATCC-ATATTGTTCCA-TGCCAGT-GGCAA--TAC-CGGT---ATT-AC-GGTAA-TTC-C--A-GTAAA--GCCGG-CAAA-TT-CT-G-GTTCA-AC---TG--AA-TTAACCACATGGGAA-T-TTTAGTATATTT-AACTGTTC------------TTTTAG--AC-CA----TACACTG-GTCAAA-TAGATTTGTAT--T-CTTTAAAAG-ATTGAAGTTATTC--TAT-TTAATTCTAGAT---TATGGA-GT--TTGTAAGCTT-----T-TTTT-TCACAACTAT-AAT-T-A-ATTATATTACA-TACAAT----T--ATAT---TTTAG--GGTG-TGTTTGTAAATTGTGAGCTGG-ACACTT--AATTAAAGTTTTGAAG-AGCCTTAGTACTTTTACAGCTGTTG---GGGCAAGTC--AAGGCA-TGTTAGC-AGTGGTCT--TTCA-CATCTTTGTC-AGAACAAAACACTTGA-AGA-A-TTCCAAA--T-GG-ATGTTTTGGGGGGAAGTTTTT-CA-GCTGAGA-TATGT---TAGGTCAATACACAGTGA---AT-TGAGC-CAACCAATT-TGCTCT--GTACTG-C-TGGTAAAT-GAT--ATTGGA-GGG-TTGAAG-CA-T-ACCATAGC-TCATGTCA-ACTTGA-CACCCACTCTTTT--C-CTTCAAC-TC--CT--ATTTT--GGGAG-TGGAAAGCAGAA-A-ATT-ATATTG--------TGATT-TTTAATTG--CTTG-GAT-----CTCTG-TTTATGTCTGTTCCTAAC---C---AC-CTTGAA-T--TGACCA--GTGTTCTTG--AAACTTGGT-TGTGTTTAACGACATTTAAAT--ACATAATA---------TAGGT-----GGTCTTCTTAAATCT-TGACCAGGTCA-G-AA-CC--ATGGCACA-GGTA-GAAT--TAT-ACCAGTGATGTTATG-TTTAC--C-TGT-TTATT-AATT-GTTT----ATTATTTTTTTGTAAATCTATAATTTGTTGTGT-AGAGG-T--g
gi|5 : GGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAAT---------------GCCGG-CAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACAATGGAA-T-TT--ATATATTT-AACTGTTC-TTTGGTTAG--TTTTAA---C-TA----CAC--TG-GTCAA--TACATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TCAGGTT-----T-TTTT-TCACA-CTTT-AAT-TCA-ATTTA-TTACATCA--------TT-AT-T---TTTAGTGAGT-----TTGTAAATTGTTG-CTGG-ACACTTCTAAATAAAGTTTTAA-GCAG-CTTAGCACTT--ACAACTGTTT---G--CA-GTC--AAG-CA-TGTT-GC-AGTGGTCC--TTCA-C-TCTTTGTC-A--ACAA--CACT-GA-AGA-AATTCCAA---T-GGGATGTTT-----GGA-----TTTCATGCTGA-A-TATGC-G-TAGGTCAATA-ACA-TGATT-AT--GA-C-CAA--AATT-TG-TCT--T-ACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TTC-CT--ATTTT--GGG-G-TGGAA--CAG-A-ATATC-AT-TTGTG-A----TA--T-TTT-ATTG--CTTT-GAT-----CTCTG-TTTATGTCTGT--CTAAC---tagaaggagcttgtctcgaattttgtaaactgt
gi|6 : GGTTGGCAAAATGCCT-GCATTTATCG-ATATT-TTCCA-TGACAGT-GGCAA-ATACATGGTTATGTTTACCG-TAAATTCAC--A-GTAAAATGC--GGCAAA-TA-CT-G-GT-CA-AT---TGGAAA-TCAACCACA-TGGAA-TATT--ATATATTT-AACTGTTC-TTTGGTTAG--TTTTAACTATATA----TAC--TGCGTCAAACTAGATTTATAT--TGCTT---CAG-ATTGAAGTTATTCC-TATGTTA--ACTGAAT---TATG-A-GTATTT-TAAGC--CTT-TT-TTTTATCACA-CTTT-AATATTA-ATTCA-TTACA-CA--------CCAAT-TAAATTT--TAGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAATTTTAA-G-AGTTTTAGCACTT--ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCA-C-TCTTTGTC-A--ACAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGAT----TT-CATGCTGA-A-TATGT-G-TAGGTTAATA-ACAGTGATT-
gi|7 : ACTTGA-TACCC-ATCTATTTACGTTTCA-C-TTGGCTTAGTTTT--GGG-GGTAGAAA-CAG-GGA-AGT-AT-TATTGAA----T--TTATTT-GTTA--ATTGTAATTCATACCCTACTTTATGTCTGTA-CTAACGAGC---ACGCCTGAA-TGCTTGACATAGTTTTCTTGTAAGACCT-ATGCGT-TT--GTG--GTTTGTAAAGCCA-AACAACTTTATGATA-CCAAATGGGTCTTCTTA--GCTACGGCCATGT-G-GGCAACC--AT-GCAC--TGTAAAAGT--TAT-ACCAGTGGAG-GCTGTTTGAC--C-TGT--TATTAAATTTGTTT-CA--TT-TTTTTTTTT-A-TCTTAA--TTAATGTATTGGAGG-TTTAA-ATT-AA--AGCATTCAACT---GTTAAA--TGGTTTCAAC-CTAAGA-TTTAATCCTGT-GCTAAT-----T--TGATT--TAA-TCAATTT-T-A--TGT---A--TACAAAGT-A-AT-AAGAAT-T-ATTTTAGATTT-
gi|8 : G-TATGTTT-AC--C-TGTAG-ATTAATTT-GTTC-GTAATT-TTTTT--GT-AATCTTTTATTTGT-GTA--GGAGG-T--TATAGT-GA--AATATTCAACT---GTTAAAAGT--TTTCAGCGCTAGGA-TTTAA-CCTGTTG--GATAA---T--TTATT--TAA-TCAATTTCTAAGATGT-TAAATCACAA--TCG-ATATATAGTGT-CTTTTAGATTTCACTTTTGATTT-TAC---TTTG-A-TTGTTGA--G--C-TATA-A--TTTA-CTTA-ACAG-TTTCAA-TTTAC------------GTATTTGC--ACTTGAG-TCTTATTTTGCACAGT---------ACCGGTAA--TGCCGGTG-T-AA-TAC--AGGG-G-T--GGAAT-tacccgactctttcgatttga
gi|9 : A-AGT-CA--AATATTCAACTACTGTTAAAAATG-TTTCAGC-CTAGGA-TTTA-TCCTGT-G--AATCA---TGTTGATT--TAAATCACATT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGA-TT-ATCTT-GATTTACAC--TTTTGCAATTGTTGAA-GCTC-TATA-AATTTTA-CTTT-AAAG-TT-CAATTTGA-CAGTA---------ATTTGCCAACTTGAGTTCTTATTT-G--CAGTCCGGTAAATA-CGGTAAA-TTCCGGCGGT-AA-AACC-AGGGCG-TGGGGAATCTTACCGCCCAACCCT
Alignments
lowQualScore : 111 1 1 55555555555555555 111 111 111 1111 11 1 111 22 111 3333333 111 666666666666666666 111 1 11 111 1 1 111 111 11111 22222 11 111 111 11111 11 1111 11 3333333333333 11 11111 11 1111111 222222222 11 1111111 11 1111 77777777777777777 222 11 11 11 11 1111 2222 222 11 111 1 1 11 111111 333 11 22222222222 11 1 1111
lowQualScore : 6 5 5 0 5 77 77 1 88 0 000 2 1 5 1 5 22222222222222222 5 5 5 5 5 5 000 77 5 7 222 99 6 6 3 99 222 5 2222 77 5 33 1 77 5 000 5 5 5 33 000 5 5 77 5 7777777 5 5 5 5 000 5 777 6 222222222222222222 55 666 3 6 111 6 8 3 3 88 444 6 6 999 3 6 6 99 1 3 66 5 66 5 5 333 333 5 5 99999 22222 11 0 5 5 66666 5 55 444 444 77 5 5 22222 5 5 55 5 5 77 5 5 5 5 5 5 5 66 1 5 33 77 1 0000 5 5 99 666 5 6 6 6 3333333333333 6 6 33 66666 7777 55 8888888 8 8 444444444 0 0 11 0 8 8 8 8888888 11 1 9999 11111111111111111 55 99 8 777 8 11 8 33 66 11 8 6 99 3 3 99 6 3 2222 1 5555 999 99 888 55 888 55 6 2 6 99 111 1 6 3 6 1 6 55 3 111111 99 6 3 6 99 6 99 99 6 6 6 6 3 7 6 3 8 8 444 8 0 88 11 8 8 0 1 8 8 8 8 8 33333333333 33 6 6 66 11 2 4 0 2 4444 8 8 6 6 6 99 6
lowQualScore : . . . . . .. .. . .. . ... . . . . . ................. . . . . . . ... .. . . ... .. . . . .. ... . .... .. . .. . .. . ... . . . .. ... . . .. . ....... . . . . ... . ... . .................. .. ... . . ... . . . . .. ... . . ... . . . .. . . .. . .. . . ... ... . . ..... ..... .. . . . ..... . .. ... ... .. . . ..... . . .. . . .. . . . . . . . .. . . .. .. . .... . . .. ... . . . . ............. . . .. ..... .... .. ....... . . ......... . . .. . . . . ....... .. . .... ................. .. .. . ... . .. . .. .. .. . . .. . . .. . . .... . .... ... .. ... .. ... .. . . . .. ... . . . . . . .. . ...... .. . . . .. . .. .. . . . . . . . . . . ... . . .. .. . . . . . . . . . ........... .. . . .. .. . . . . .... . . . . . .. .
lowQualScore : 7 7 7 1 7 11 11 4 77 7 000 0 4 0 4 7 00000000000000000 7 7 7 7 7 7 000 99 7 5 555 22 7 7 2 22 333 7 1111 99 7 66 4 99 7 000 7 7 7 44 000 7 7 99 7 1111111 7 7 7 7 777 7 777 7 000000000000000000 77 555 3 7 888 0 8 8 8 66 000 7 7 888 3 7 7 22 7 3 99 0 99 0 0 555 111 0 6 44444 55555 99 4 0 0 77777 7 11 333 333 99 7 7 00000 7 7 99 7 7 99 7 7 7 7 7 0 0 44 4 7 66 99 7 0000 7 7 33 777 7 7 7 7 3333333333333 7 7 33 77777 5555 88 9999999 0 0 888888888 6 8 00 8 0 0 0 8888888 00 0 8888 22222222222222222 88 22 0 222 0 00 0 66 44 00 0 0 88 2 2 22 7 2 5555 7 3333 000 88 000 22 000 88 7 5 7 22 777 7 7 3 7 7 7 88 2 888888 22 7 2 7 22 7 22 22 7 7 7 7 5 3 7 8 0 0 000 0 8 88 00 0 0 8 4 0 0 0 0 0 66666666666 00 7 7 88 00 8 3 7 2 0000 0 0 7 7 7 22 7
consensus : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA-TGCCGGGCAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACANTGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TAAGCTTCTT-TT-TTTT-TCACA-CTTT-AAT-TTA-ATTNN-TTACA-CA--------T--AT-T---TTTAGTGGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAGTTTTNAAGAGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGT-GT-AGGTCAATA-ACAGTGATT-AT-TGA-C-CAA--AATT-TG-TCT--TTACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTT--GGG-G-TGGAA--CAG-A-A-A-TC-AT-TTGTGAA----TGATT-TTTA-TTGCT-TG-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T--TGGAC--AGTTTTCTTG--AAACTT-GT-TGT-TTTAACG--ATTTAT--ANCC--ATAAC------ATA--C--AT-GGTCTTCTTATAACT-TGACCAGGT-G-GC-ACC--AT-GCACA-GGTAGGAAT--TAT-ACCAGTGATG-TATGTTTTAC--C-TGTATTATTAAA-TTGTTT-A-AATT-TTTTTTTGT-AATCTTNAATTTGTTGTA-CGGAGG--TAA-AGT-GA--AATATTCAACT---GTTAAAAAT-GTTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGATTT-ACTTT-GATTT-CACA-TTTTG-AATTGTTGAA-G--C-TATA-AATTTTA-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAA-TGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
Reference ( family-51 ) : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA-TGCCGGGCAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACANTGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TAAGCTTCTT-TT-TTTT-TCACA-CTTT-AAT-TTA-ATTNN-TTACA-CA--------T--AT-T---TTTAGTGGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAGTTTTNAAGAGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGT-GT-AGGTCAATA-ACAGTGATT-AT-TGA-C-CAA--AATT-TG-TCT--TTACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTT--GGG-G-TGGAA--CAG-A-A-A-TC-AT-TTGTGAA----TGATT-TTTA-TTGCT-TG-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T--TGGAC--AGTTTTCTTG--AAACTT-GT-TGT-TTTAACG--ATTTAT--ANCC--ATAAC------ATA-GC--AT-GGTCTTCTTATAACT-TGACCAGGT-G-GC-ACC--AT-GCACA-GGTAGGAAT--TAT-ACCAGTGATG-TATGTTTTAC--C-TGTATTATTAAA-TTGTTT-AAAATT-TTTTTTTGT-AATCTTNAATTTGTTGTA-CGGAGG--TAA-AGT-GA--AATATTCAACT---GTTAAAAAT-GTTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGATTT-ACTTT-GATTT-CACA-TTTTG-AATTGTTGAA-G--C-TATA-AATTTTA-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAA-TGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|1 : AGGGTTGGCAAAATGCCG--CATTTATCC-ATATT-TTACA-TGCCAGTTGGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAAATGCCGGGCAAAATA-CTTGCGT-CA-AT---TG--A--TAAACCACTCTGGAA-T-TT--ATATATTTTAACTTTCTTTTG-GTTAG--TTTTAA--AC-TA----CAC--TG-GTCAA---AGATTT-TAT--T-CTT---AAGGATTGAAGTTATTCC-TAT-TTAGTACTGAAT---TATG-A-GT--TT-TAAGCTTCCTCTT-TTTT-TCACA--TTT-AAT-TTA-ATTAT-TTACA-CA--------T--AT-T---TTTAGTAG-TG-T-TTTGTAA-TTGTTTGCTAA-ACACTTCAAAATAAAGTTATTA-GAGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTCCAAAGGCA-TCTT-GC-AGTGGTCT--T-CAC-TCTTTG-CA--A-CAA--CACT-GA-AGA-ATTTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGTTGT-AGGTCAATA-ACAGTGATT-AT-TGA-CACAA--AATT-TG-TCT--TTCCTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATTGC-TCGAGTCATACTTGA-CACCC-C-CTTTTTCC-TTGCAAC-TT--CT--ATTT---GGG-G-TGGAA--CAG-A-A-A-TC-AT-TTGTAAA----TAATT-TTTA-TTGCT-TG-AGT-----CTCTG-TTATATGTCTGT--CTAAC---TCTTAC-CATGAAAT--TGGAC--AGTGTTCTTG--AAACTT-GT-TGT-TTTAACA--ATTTAT--ACCC--ATAAC------ATATACT-ATTAGT-TTCTTATAACT-TGACCAGGT-GTGC-ACC--AT-GCACAAGGTAGTAAT--TAT-ACCAGTGATG-TATGTTTTAA--C-TGTATTATCAAA-TTGTTTAAAAATT-TTTTTTTGT-AATCTTAATTTTGTTGTA--GGAGG--TAA-AGTCAA--AATATTCAACT---GTT-AAAAT-GTTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TATAA--T-G-ATAAAGAAT-T-AATTTATATTT-ACTTC-GATTT-TACATTTTTG-AATTGTTGAA-G--C-TATA-AATTTAA-TTTA-AAAG-TT-CAA-TTGACCAGTATTGCCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAATTGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|10 : -CG-GTC--AAGGCAATGTT-GC-AGTGGTCT--TTCACCTCTTTGTCA--AACAA--CACT-GA-AGA-A-TTCCAAAATT-GGGATGTTT-----G-A-----TTTTCATGCTAA-T-TATGT-GTTAGGTCAATA-ACAGTGATT-A--TGA-C-CAA--AA-T-TG-TTTTCTTACTG-CGTG-TAAAT-G-T--ATTGGA-GGGTTTGAAGCCATT-ACCATAGCTTCATGTCATACTTGACCACCC-
gi|11 : -TA----TAC--TG-GTCAA--TAAATTT-TCT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-CAT-TACTGAAT---TATG-A-GT--TT-GAAGC--CTT-TT-TTTT-TTACA-CTTTAAAT-TTACATTTA-TT
gi|12 : CTCGGG-CCTTGTTT-AN-NNNNNNNNNNNNNNNNNNNNNN-NNCCGGCTGT-AAATACC-AGGG-G-T--GGAAT-TTACCCTCCAACCCTtaa
gi|13 : AGC-TCATGTCATACTTGA-CACCC-CTCCTTTTCC-TTTCAACTTT--CT--ATTTTTAGGG-T-TAGAA--CAG-G-A-
gi|14 : ATTTATCC-ATATT-TCCCA-TGCC-----------------------TT---CGGTAAATGC-C--A-------------GCAAA-TC-CT-G-GT-CA-GC---TG--AA-TTGACCAgaatattttg
gi|15 : aaaaccctgTGATT-ATATGA-C-CAA--AATT-TG-TCT--TGCTTG-C-TG-CAAAT-G-T--ATTTGA---G-TTGAAACCA-T-
gi|16 : GTCA--A-CAA--CACT-GA-AGA-----------------ATGTTT-----GGAT----TT--CAAGCTGA-A-T
gi|17 : -AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|2 : GGTTGGCAAAATGCCTTGCATTTATTCGATATT-TTCCAATGACAGT-GGCAACATAC--AGT---ATTTACTG-TAAATTC-CCTATGTAAA-TGCCG--CAAA-TAGCT-G-GT-CAGAT---TG--AA-TCAACCACAATGGAAGT-TT--ATATATTT-AACTGTTCTTTGAGTTAG--TTTTTA--AC-TAGATATAC--TG-GTCAA--TAGATTT-TATGCT-CTT---CAG-ATTGAAGTTATTCCCTAT-TTA--ACTGA-----TATG-AAGT--TT-TAAGCCCCTT-TTATTTT-TCACA-CTTT-AAT-T-A-ATTCA-TTACA-CAAGTCCAATT--AT-TG--TTTAGTGAGTGCT-TTTGTAA-TTGTTGGCTGG-ACACT-CTAA-TAAAATTTTTAAGAGTTTTAGCACTTT-ACAACTGTTTTTGGG-CA-GTC--GAGGCAATGTT-GCCAGTGGTCTATTCCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCAAAA--TAGGGATG-TT-----GGA-----TT--CATGCTGA-ATTATGT-GT-AGGTTAATA-ACAGTGATTAATATGA---CAA--CATT-TG-TC---TTACTGTC-TG---AAT-G-TCAATTGGAGGGG-TTGAAG-CA-T-ACCATAGC-TCAT-TCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATATT----G-G-TGGAA--C-G-A-A-A-TCAAT-TTG--------TGATTATTTA-TTGCTCTT-GAT-----CCTGG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T----GAT--GGGTTTC--G--AAACTT-GT-TGT-TTTAACA--ATTTAT--ACC-----AAC------AT------AT-GGTCTTCTTGTGAAT-TGACCAGGT-T-GC-ACCTGAT-GCACA-GGTAGGAATGATAT-ACCAGTGATG-TATGTTTTAC--CTTGTATTATT-AA-TTGCTT-AGAA-T-TTTTTTTAT-AATCTTT-ATTTGTTGTA--GGAGGT-TAA-A---GA--AAT-TTCAAAC---GTGTAAAAT-GTTTCAGCTCTAGAATTTTAACCCTGT-GT-AATAATTGT--TGATTTATAA-TCA--TT-TAA--TGTGTAA--TACAA--T-GTATAAAGAAT-TAATTTTAG-TTT-ACTTT-GATTT-CACA--TTTG-AATTGTTGAACG--CTTATACAATTTTACTTTACAAAGTTT-CAA-TTTACCAGTATTTGCCG----------ACTTGAG-TCTTATTT-GC-C-GTCC-GTAAGT
gi|3 : AGGGTTGGCAAAATGCCG-GCAGG-ATGC-CTAAG-T-CCA-TGC-AG--GGCAA-AT-C-CG-T---ATT-ACCG-TAA-TTC-C---------------GGCAAA-TA-CT-G-GT-CA-ATTAATG--AACTCAA-CACACTGGAA---TT--ATATTATT-AA--GGTC-TTG-G--AGTCTTCTAA--CC-TA----TAC--TG-GCCAC--TAAA--T-TAT--T-GCT---AAG-A--GAAGTTA---C-TAT-TTA----TGAATAGATATA-G-TT--TT-TAAGC-------T-TTTT-TCACA-C--T-AA----A-ATTAT-TTACA-CA-----------A--T---TTCA--GGGTG---TTTGTAA-TTG-TGGCTGGCACACg
gi|3 : --A-CGA--CACT-GGGAGACGATACCAA---T-GG-ATGCTTCT---GGA-----TC--AGTG-----A-TATG-----AGGTAAA-----AATGAT------GA-CACAC--AATTGTG-T------AC-G-C-T--TGAATAG-T--AT-GGA-GGG-TTGAAGCCA-CGACCA-AGC--CATGTCATACTTGA-CA-CC-CTCTTTTCCA-TC---AC-TC--CC--AT------GG-G-TGTAAC-CAGAA-A-A-TC-AT-TTATCAACAGGTGACT-ATTA-TTGCT-T--GAT-----CTCTG----TA-GTCT-T--CTAA----C---AC-CCTGAA-T--TG-----AGTTCCTTTG--AA---T-AT-GGT-CCC-------TCTAT--AACT---TGAC-----------C--AG-GG--------CAACC-TGAC--------GC-AC------------GGTA--CAT--TATGACCAGTGA-G----AGTTTACCAC-TGTATT-TCA----TG-TT-AACA------TGTTGT-CCTCTTGAATCTG-CGTG-C-GAGG--TAC-AGT-GACGACTATTCAACT---GTTAAAAAT-GTTACAGC-CTAGGA-TTTAAT-CTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAA--T-A-TTTAGA-TT-AC-TT-GATTT-CAC--TTTTG-AATTGTTGAA-G--C-TATA-AATTTAC-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTA-TTGCC-ACTTGAG-TCTTATTT-GC-CA--TCGGTACATA-CGGTAAA--ACCGGCGGTAAA-TACCTAGGG-GCT--GGAAT-TTACCGCCCAACCCTaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcacgacactgggagacgataccaatggatgcttctggatcagtgatatgaggtaaaaatgatgacacacaattgtgtacgcttgaatagtatggagggttgaagccacgaccaagccatgtcatacttgacaccctcttttccatcactcccatgggtgtaaccagaaaatcatttatcaacaggtgactattattgcttgatctctgtagtcttctaacaccctgaattgagttcctttgaatatggtccctctataacttgaccagggcaacctgacgcacggtacattatgaccagtgagagtttaccactgtatttcatgttaacatgttgtcctcttgaatctgcgtgcgaggtacagtgacgactattcaactgttaaaaatgttacagcctaggatttaatctgtgaataattgatttaatcaattttaatgttaatacaatgataaagaatatttagattacttgatttcacttttgaattgttgaagctataaatttactttaaaagttcaattgaccagtatttgccggtattgccacttgagtcttatttgccatcggtacatacggtaaaaccggcggtaaatacctaggggctggaatttaccgcccaaccctg
gi|4 : agggttggcaaaatgccggcaggatgcctaagtccatgcagggcaaatccgtattaccgtaattccggcaaatactggtcaattaatgaactcaacacactggaattatattattaaggtcttggagtcttctaacctatactggccactaaattattgctaagagaagttactatttatgaatagatatagtttttaagcttttttcacactaaaattatttacacaatttcagggtgtttgtaattgtggctggcacacaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcCAAAATGCAG-GCATTTATCC-ATATTGTTCCA-TGCCAGT-GGCAA--TAC-CGGT---ATT-AC-GGTAA-TTC-C--A-GTAAA--GCCGG-CAAA-TT-CT-G-GTTCA-AC---TG--AA-TTAACCACATGGGAA-T-TTTAGTATATTT-AACTGTTCTTT------------TAG--AC-CA----TACACTG-GTCAAA-TAGATTTGTAT--T-CTTTAAAAG-ATTGAAGTTATTC--TAT-TTAATTCTAGAT---TATGGA-GT--TTGTAAGCTT-----T-TTTT-TCACAACTAT-AAT-T-A-ATTATATTACA-TACAAT----T--ATAT---TTTAG--GGTG-TGTTTGTAAATTGTGAGCTGG-ACACTT--AATTAAAGTTTTGAAGAGCCTTAGTACTTTTACAGCTGTTG---GGGCAAGTC--AAGGCA-TGTTAGC-AGTGGTCT--TTCACATCTTTGTCAGAA-CAAAACACTTGA-AGA-A-TTCCAAA--T-GG-ATGTTTTGGGGGGAAGTTTTT--CA-GCTGAGA-TATGT--T-AGGTCAATACACAGTGA---AT-TGAGC-CAACCAATT-TGCTCT--GTACTG-C-TGGTAAAT-GAT--ATTGGA-GGG-TTGAAGC-A-T-ACCATAGC-TCATGTCA-ACTTGA-CACCCACTCTTTTCC---TTCAAC-TC--CT--ATTTT--GGGAG-TGGAAAGCAG-A-A-AATT-ATATTGTGA--------TT-TTTAATTGCT-TG-GAT-----CTCTG-TT-TATGTCTGTTCCTAAC---C---AC-CTTGAA-T--TGACC--AGTGTTCTTG--AAACTTGGT-TGTGTTTAACGACATTTAA--ATAC--ATAAT------ATA-G---GT-GGTCTTCTTAAATCT-TGACCAGGTCA-GA-ACC--ATGGCACA-GGTA-GAAT--TAT-ACCAGTGATGTTATG-TTTAC--C-TGT-TTATT-AA-TTGTTT----ATTATTTTTTTGTAAATCTATAATTTGTTGTG-TAGAGG--Tg
gi|5 : GGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAAT---------------GCCGG-CAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACAATGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA---C-TA----CAC--TG-GTCAA--TACATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TCAGGTT-----T-TTTT-TCACA-CTTT-AAT-TCA-ATTTA-TTACATCA--------TT-AT-T---TTTAGTGAGT-----TTGTAAATTGTTG-CTGG-ACACTTCTAAATAAAGTTTTAAGCAG-CTTAGCACTT--ACAACTGTTT---G--CA-GTC--AAG-CA-TGTT-GC-AGTGGTCC--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAA---T-GGGATGTTT-----GGA-----TTT-CATGCTGA-A-TATGC-GT-AGGTCAATA-ACA-TGATT-AT--GA-C-CAA--AATT-TG-TCT--T-ACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TTC-CT--ATTTT--GGG-G-TGGAA--CAG-A-ATA-TC-AT-TTGTG-A----TA--T-TTTA-TTGCT-TT-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---tagaaggagcttgtctcgaattttgtaaactgt
gi|6 : GGTTGGCAAAATGCCT-GCATTTATCG-ATATT-TTCCA-TGACAGT-GGCAA-ATACATGGTTATGTTTACCG-TAAATTCAC--A-GTAAAATGC--GGCAAA-TA-CT-G-GT-CA-AT---TGGAAA-TCAACCACA-TGGAA-TATT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAACTATATA----TAC--TGCGTCAAACTAGATTTATAT--TGCTT---CAG-ATTGAAGTTATTCC-TATGTTA--ACTGAAT---TATG-A-GTATTT-TAAGC--CTT-TT-TTTTATCACA-CTTT-AATATTA-ATTCA-TTACA-CA--------CCAAT-TAAATTT--TAGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAATTTT-AAGAGTTTTAGCACTT--ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGAT----TT--CATGCTGA-A-TATGT-GT-AGGTTAATA-ACAGTGATT-
gi|7 : ACTTGA-TACCC-ATCTATTTACGTTTCA-C-TTGGCTTAGTTTT--GGG-GGTAGAAA-CAG-GGA-A-GT-AT-TATTGAA----T--TTATTTG-TTAAT-TGTAATTCATACCCTACTT-TATGTCTGTA-CTAACGAGC---ACGCCTGAA-TGCTTGACATAGTTTTCTTGTAAGACCT-ATGCGT-TT--GTG--GTTTGTAAAGCCAAACAACTTTATGATA-CCAAATGGGTCTTCT--TAGCTACGGCCATGTGG-GCAACC--AT-GCAC--TGTAAAAGT--TAT-ACCAGTGGAG-GCTGTTTGAC--C-TG--TTATTAAATTTGTTT---CATT-TTTTTTTTT--ATCTTAA--TTAATGTATTGGAGGTTTAA-ATT-AA--AGCATTCAACT---GTT--AAATGGTTTCAAC-CTAAGA-TTTAATCCTGT-GCTAAT-----T--TGATT--TAA-TCAATTT-T-A--TGT---A--TACAAAGT-A-AT-AAGAAT-T-ATTTTAGATTT-
gi|8 : G-TATGTTT-AC--C-TGTAG-ATTAAT-TTGTTC-GTAATT-TTTTT--GT-AATCTTTTATTTGT-GTA--GGAGG--TTATAGT-GA--AATATTCAACT---GTTAAAAGT--TTTCAGCGCTAGGA-TTTAA-CCTGTTG--GATAA---T--TTATT--TAA-TCAATTTCTAAGATGT-TAAATCACAA--TCG-ATATATAGTGT-CTTTTAGATTTCACTTTTGATTT-TAC---TTTG-A-TTGTTGA--G--C-TATA-A--TTTA-CTTA-ACAG-TTTCAA-TTTAC------------GTATTTGC--ACTTGAG-TCTTATTTTGCACAGT---------ACCGGTAA--TGCCGGTG-T-AA-TAC--AGGG-G-T--GGAAT-tacccgactctttcgatttga
gi|9 : A-AGT-CA--AATATTCAACTACTGTTAAAAAT-GTTTCAGC-CTAGGA-TTTA-TCCTGT-G--AATCA---TGTTGATT--TAAATCACATT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGA-TT-ATCTT-GATTTACAC--TTTTGCAATTGTTGAA-GCTC-TATA-AATTTTA-CTTT-AAAG-TT-CAATTTGA-CAGTA---------ATTTGCCAACTTGAGTTCTTATTT-G--CAGTCCGGTAAATA-CGGTAAA-TTCCGGCGGT-AA-AACC-AGGGCG-TGGGGAATCTTACCGCCCAACCCT
Alignments
lowQualScore : 111 1 1 55555555555555555 111 111 111 1111 11 1 111 22 111 3333333 111 666666666666666666 111 1 11 111 1 1 111 111 11111 22222 11 111 111 11111 11 1111 11 3333333333333 11 11111 11 1111111 1111111111 11 1111111 555555555555555555555555555555 111 111 11 11 11 11 33333333333 222 111 1 11 111111 22 11 22222222222 11 1 1111
lowQualScore : 6 5 5 0 5 77 77 1 88 0 000 2 1 5 1 5 22222222222222222 5 5 5 5 5 5 000 77 5 7 222 99 6 6 3 99 222 5 2222 77 5 33 1 77 5 000 5 5 5 33 000 5 5 77 5 7777777 5 5 5 5 000 5 777 6 222222222222222222 55 666 3 6 111 6 8 3 3 88 444 6 6 999 3 6 6 99 1 3 66 5 66 5 5 333 333 5 5 99999 22222 11 0 5 5 66666 5 55 444 444 77 5 5 22222 5 5 55 5 5 77 5 5 5 5 5 5 5 66 1 5 33 77 1 0000 5 5 99 666 5 6 6 6 3333333333333 6 6 33 66666 7777 55 8888888 8 8 8888888888 0 0 11 0 8 8 8 8888888 777777777777777777777777777777 333 9 8 999 8 8 11 8 33 66 11 8 6 99 3 3 99 6 7 7 6 88888888888 6 3 888 55 888 6 99 6 2 6 99 111 5 6 3 6 1 6 55 3 111111 99 6 3 6 99 6 99 99 6 6 6 6 3 7 6 3 8 8 66 8 8 0 88 11 8 8 0 1 8 8 8 8 8 33333333333 33 6 6 66 11 2 4 0 2 4444 8 8 6 6 6 99 6
lowQualScore : . . . . . .. .. . .. . ... . . . . . ................. . . . . . . ... .. . . ... .. . . . .. ... . .... .. . .. . .. . ... . . . .. ... . . .. . ....... . . . . ... . ... . .................. .. ... . . ... . . . . .. ... . . ... . . . .. . . .. . .. . . ... ... . . ..... ..... .. . . . ..... . .. ... ... .. . . ..... . . .. . . .. . . . . . . . .. . . .. .. . .... . . .. ... . . . . ............. . . .. ..... .... .. ....... . . .......... . . .. . . . . ....... .............................. ... . . ... . . .. . .. .. .. . . .. . . .. . . . . ........... . . ... .. ... . .. . . . .. ... . . . . . . .. . ...... .. . . . .. . .. .. . . . . . . . . . . .. . . . .. .. . . . . . . . . . ........... .. . . .. .. . . . . .... . . . . . .. .
lowQualScore : 7 7 7 1 7 11 11 4 77 7 000 0 4 0 4 7 00000000000000000 7 7 7 7 7 7 000 99 7 5 555 22 7 7 2 22 333 7 1111 99 7 66 4 99 7 000 7 7 7 44 000 7 7 99 7 1111111 7 7 7 7 777 7 777 7 000000000000000000 77 555 3 7 888 0 8 8 8 66 000 7 7 888 3 7 7 22 7 3 99 0 99 0 0 555 111 0 6 44444 55555 99 4 0 0 77777 7 11 333 333 99 7 7 00000 7 7 99 7 7 99 7 7 7 7 7 0 0 44 4 7 66 99 7 0000 7 7 33 777 7 7 7 7 3333333333333 7 7 33 77777 5555 88 9999999 0 0 8888888888 6 8 00 8 0 0 0 8888888 222222222222222222222222222222 888 0 0 222 0 0 00 0 66 44 00 0 0 88 2 2 22 7 3 3 7 88888888888 7 2 000 22 000 7 22 7 5 7 22 777 7 7 3 7 7 7 88 2 888888 22 7 2 7 22 7 22 22 7 7 7 7 5 3 7 8 0 0 00 0 0 8 88 00 0 0 8 4 0 0 0 0 0 66666666666 00 7 7 88 00 8 3 7 2 0000 0 0 7 7 7 22 7
consensus : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA-TGCCGGGCAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACANTGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TAAGCTTCTT-TT-TTTT-TCACA-CTTT-AAT-TTA-ATTNN-TTACA-CA--------T--AT-T---TTTAGTGGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAGTTTTNAAGAGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGT-GT-AGGTCAATA-ACAGTGATT-AT-TGA-C-CAA--AATT-TG-TCT--TTACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTT--GGG-G-TGGAA--CAG-A-A-A-TC-AT-TTGTGAA----TGATT-TTTA-TTGCT-TG-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T--TGGACA--GTTTTCTTG--AAACTT-GT-TGT-TTTAACG--ATTTATAN--CCA--TAAC------ATAC---A----TGG-TCTTCTTATAACT-TGACCAGGT-G-G-CA-CC--AT-GCACA-GGTAGGAAT--TAT-ACCAGTGATG-TATGTTTTAC--C-TGTATTATTAAATT-GTT--TAAA--TT-TTTTTTTGT-AATCTTNAATTTGTTGTAC-GGAGG-T--AA-AGT-GA--AATATTCAACT---GTTAAAAATG-TTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGATTT-ACTTT-GATTT-CACATTTT-G-AATTGTTGAA-G--C-TATA-AATTTTA-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAA-TGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
Reference ( family-51 ) : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA-TGCCGGGCAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACANTGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TAAGCTTCTT-TT-TTTT-TCACA-CTTT-AAT-TTA-ATTNN-TTACA-CA--------T--AT-T---TTTAGTGGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAGTTTTNAAGAGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGT-GT-AGGTCAATA-ACAGTGATT-AT-TGA-C-CAA--AATT-TG-TCT--TTACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTT--GGG-G-TGGAA--CAG-A-A-A-TC-AT-TTGTGAA----TGATT-TTTA-TTGCT-TG-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T--TGGACA--GTTTTCTTG--AAACTT-GT-TGT-TTTAACG--ATTTATAN--CCA--TAAC------ATAC---A----TGG-TCTTCTTATAACT-TGACCAGGT-G-G-CA-CC--AT-GCACA-GGTAGGAAT--TAT-ACCAGTGATG-TATGTTTTAC--C-TGTATTATTAAATT-GTT--TAAA--TT-TTTTTTTGT-AATCTTNAATTTGTTGTAC-GGAGG-T--AA-AGT-GA--AATATTCAACT---GTTAAAAATG-TTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGATTT-ACTTT-GATTT-CACATTTT-G-AATTGTTGAA-G--C-TATA-AATTTTA-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAA-TGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|1 : AGGGTTGGCAAAATGCCG--CATTTATCC-ATATT-TTACA-TGCCAGTTGGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAAATGCCGGGCAAAATA-CTTGCGT-CA-AT---TG--A--TAAACCACTCTGGAA-T-TT--ATATATTTTAACTTTCTTTTG-GTTAG--TTTTAA--AC-TA----CAC--TG-GTCAA---AGATTT-TAT--T-CTT---AAGGATTGAAGTTATTCC-TAT-TTAGTACTGAAT---TATG-A-GT--TT-TAAGCTTCCTCTT-TTTT-TCACA--TTT-AAT-TTA-ATTAT-TTACA-CA--------T--AT-T---TTTAGTAG-TG-T-TTTGTAA-TTGTTTGCTAA-ACACTTCAAAATAAAGTTATTA-GAGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTCCAAAGGCA-TCTT-GC-AGTGGTCT--T-CAC-TCTTTG-CA--A-CAA--CACT-GA-AGA-ATTTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGTTGT-AGGTCAATA-ACAGTGATT-AT-TGA-CACAA--AATT-TG-TCT--TTCCTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATTGC-TCGAGTCATACTTGA-CACCC-C-CTTTTTCC-TTGCAAC-TT--CT--ATTT---GGG-G-TGGAA--CAG-A-A-A-TC-AT-TTGTAAA----TAATT-TTTA-TTGCT-TG-AGT-----CTCTG-TTATATGTCTGT--CTAAC---TCTTAC-CATGAAAT--TGGACA--GTGTTCTTG--AAACTT-GT-TGT-TTTAACA--ATTTATAC--CCA--TAAC------ATAT---ACTATTAG-T-TTCTTATAACT-TGACCAGGT-GTG-CA-CC--AT-GCACAAGGTAGTAAT--TAT-ACCAGTGATG-TATGTTTTAA--C-TGTATTATCAAATT-GTT--TAAAAATT-TTTTTTTGT-AATCTTAATTTTGTTGTA--GGAGG-T--AA-AGTCAA--AATATTCAACT---GTTAAAA-TG-TTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TATAA--T-G-ATAAAGAAT-T-AATTTATATTT-ACTTC-GATTT-TACATTTTTG-AATTGTTGAA-G--C-TATA-AATTTAA-TTTA-AAAG-TT-CAA-TTGACCAGTATTGCCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAATTGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|10 : -CG-GTC--AAGGCAATGTT-GC-AGTGGTCT--TTCACCTCTTTGTCA--AACAA--CACT-GA-AGA-A-TTCCAAAATT-GGGATGTTT-----G-A-----TTTTCATGCTAA-T-TATGT-GTTAGGTCAATA-ACAGTGATT-A--TGA-C-CAA--AA-T-TG-TTTTCTTACTG-CGTG-TAAAT-G-T--ATTGGA-GGGTTTGAAGCCATT-ACCATAGCTTCATGTCATACTTGACCACCC-
gi|11 : -TA----TAC--TG-GTCAA--TAAATTT-TCT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-CAT-TACTGAAT---TATG-A-GT--TT-GAAGC--CTT-TT-TTTT-TTACA-CTTTAAAT-TTACATTTA-TT
gi|12 : CTCGGG-CCTTGTTT-AN-NNNNNNNNNNNNNNNNNNNNNN-NNCCGGCTGT-AAATACC-AGGG-G-T--GGAAT-TTACCCTCCAACCCTtaa
gi|13 : AGC-TCATGTCATACTTGA-CACCC-CTCCTTTTCC-TTTCAACTTT--CT--ATTTTTAGGG-T-TAGAA--CAG-G-A-
gi|14 : ATTTATCC-ATATT-TCCCA-TGCC-----------------------TT---CGGTAAATGC-C--A-------------GCAAA-TC-CT-G-GT-CA-GC---TG--AA-TTGACCAgaatattttg
gi|15 : aaaaccctgTGATT-ATATGA-C-CAA--AATT-TG-TCT--TGCTTG-C-TG-CAAAT-G-T--ATTTGA---G-TTGAAACCA-T-
gi|16 : GTCA--A-CAA--CACT-GA-AGA-----------------ATGTTT-----GGAT----TT--CAAGCTGA-A-T
gi|17 : -AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|2 : GGTTGGCAAAATGCCTTGCATTTATTCGATATT-TTCCAATGACAGT-GGCAACATAC--AGT---ATTTACTG-TAAATTC-CCTATGTAAA-TGCCG--CAAA-TAGCT-G-GT-CAGAT---TG--AA-TCAACCACAATGGAAGT-TT--ATATATTT-AACTGTTCTTTGAGTTAG--TTTTTA--AC-TAGATATAC--TG-GTCAA--TAGATTT-TATGCT-CTT---CAG-ATTGAAGTTATTCCCTAT-TTA--ACTGA-----TATG-AAGT--TT-TAAGCCCCTT-TTATTTT-TCACA-CTTT-AAT-T-A-ATTCA-TTACA-CAAGTCCAATT--AT-TG--TTTAGTGAGTGCT-TTTGTAA-TTGTTGGCTGG-ACACT-CTAA-TAAAATTTTTAAGAGTTTTAGCACTTT-ACAACTGTTTTTGGG-CA-GTC--GAGGCAATGTT-GCCAGTGGTCTATTCCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCAAAA--TAGGGATG-TT-----GGA-----TT--CATGCTGA-ATTATGT-GT-AGGTTAATA-ACAGTGATTAATATGA---CAA--CATT-TG-TC---TTACTGTC-TG---AAT-G-TCAATTGGAGGGG-TTGAAG-CA-T-ACCATAGC-TCAT-TCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATATT----G-G-TGGAA--C-G-A-A-A-TCAAT-TTG--------TGATTATTTA-TTGCTCTT-GAT-----CCTGG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T----GATG--GGTTTC--G--AAACTT-GT-TGT-TTTAACA--ATTTATAC--C-----AAC------AT-----A----TGG-TCTTCTTGTGAAT-TGACCAGGT-T-G-CA-CCTGAT-GCACA-GGTAGGAATGATAT-ACCAGTGATG-TATGTTTTAC--CTTGTATTATT-AATT-GCT--TAGA--AT-TTTTTTTAT-AATCTTT-ATTTGTTGTA--GGAGGTT--AA-A---GA--AAT-TTCAAAC---GTGTAAAATG-TTTCAGCTCTAGAATTTTAACCCTGT-GT-AATAATTGT--TGATTTATAA-TCA--TT-TAA--TGTGTAA--TACAA--T-GTATAAAGAAT-TAATTTTAG-TTT-ACTTT-GATTT-CACA-TTT-G-AATTGTTGAACG--CTTATACAATTTTACTTTACAAAGTTT-CAA-TTTACCAGTATTTGCCG----------ACTTGAG-TCTTATTT-GC-C-GTCC-GTAAGT
gi|3 : AGGGTTGGCAAAATGCCG-GCAGG-ATGC-CTAAG-T-CCA-TGC-AG--GGCAA-AT-C-CG-T---ATT-ACCG-TAA-TTC-C---------------GGCAAA-TA-CT-G-GT-CA-ATTAATG--AACTCAA-CACACTGGAA---TT--ATATTATT-AA--GGTC-TTG-G--AGTCTTCTAA--CC-TA----TAC--TG-GCCAC--TAAA--T-TAT--T-GCT---AAG-A--GAAGTTA---C-TAT-TTA----TGAATAGATATA-G-TT--TT-TAAGC-------T-TTTT-TCACA-C--T-AA----A-ATTAT-TTACA-CA-----------A--T---TTCA--GGGTG---TTTGTAA-TTG-TGGCTGGCACACg
gi|3 : --A-CGA--CACT-GGGAGACGATACCAA---T-GG-ATGCTTCT---GGA-----TC--AGTG-----A-TATG-----AGGTAAA-----AATGAT------GA-CACAC--AATTGTG-T------AC-G-C-T--TGAATAG-T--AT-GGA-GGG-TTGAAGCCA-CGACCA-AGC--CATGTCATACTTGA-CA-CC-CTCTTTTCCA-TC---AC-TC--CC--AT------GG-G-TGTAAC-CAGAA-A-A-TC-AT-TTATCAACAGGTGACT-ATTA-TTGCT-T--GAT-----CTCTG----TA-GTCT-T--CTAA----C---AC-CCTGAA-T--TG---A--GTTCCTTTG--AA---T-AT-GGT-CCC-------TCTATAA--CT---TGAC---------C---A----GGG---------CAACC-TGAC--------G-CA-C------------GGTA--CAT--TATGACCAGTGA-G----AGTTTACCAC-TGTATT-TCA---T-GTT--AACA--------TGTTGT-CCTCTTGAATCTG-CGTGC--GAGG-T--AC-AGT-GACGACTATTCAACT---GTTAAAAATG-TTACAGC-CTAGGA-TTTAAT-CTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAA--T-A-TTTAGA-TT-AC-TT-GATTT-CAC-TTTT-G-AATTGTTGAA-G--C-TATA-AATTTAC-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTA-TTGCC-ACTTGAG-TCTTATTT-GC-CA--TCGGTACATA-CGGTAAA--ACCGGCGGTAAA-TACCTAGGG-GCT--GGAAT-TTACCGCCCAACCCTaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcacgacactgggagacgataccaatggatgcttctggatcagtgatatgaggtaaaaatgatgacacacaattgtgtacgcttgaatagtatggagggttgaagccacgaccaagccatgtcatacttgacaccctcttttccatcactcccatgggtgtaaccagaaaatcatttatcaacaggtgactattattgcttgatctctgtagtcttctaacaccctgaattgagttcctttgaatatggtccctctataacttgaccagggcaacctgacgcacggtacattatgaccagtgagagtttaccactgtatttcatgttaacatgttgtcctcttgaatctgcgtgcgaggtacagtgacgactattcaactgttaaaaatgttacagcctaggatttaatctgtgaataattgatttaatcaattttaatgttaatacaatgataaagaatatttagattacttgatttcacttttgaattgttgaagctataaatttactttaaaagttcaattgaccagtatttgccggtattgccacttgagtcttatttgccatcggtacatacggtaaaaccggcggtaaatacctaggggctggaatttaccgcccaaccctg
gi|4 : agggttggcaaaatgccggcaggatgcctaagtccatgcagggcaaatccgtattaccgtaattccggcaaatactggtcaattaatgaactcaacacactggaattatattattaaggtcttggagtcttctaacctatactggccactaaattattgctaagagaagttactatttatgaatagatatagtttttaagcttttttcacactaaaattatttacacaatttcagggtgtttgtaattgtggctggcacacaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcCAAAATGCAG-GCATTTATCC-ATATTGTTCCA-TGCCAGT-GGCAA--TAC-CGGT---ATT-AC-GGTAA-TTC-C--A-GTAAA--GCCGG-CAAA-TT-CT-G-GTTCA-AC---TG--AA-TTAACCACATGGGAA-T-TTTAGTATATTT-AACTGTTCTTT------------TAG--AC-CA----TACACTG-GTCAAA-TAGATTTGTAT--T-CTTTAAAAG-ATTGAAGTTATTC--TAT-TTAATTCTAGAT---TATGGA-GT--TTGTAAGCTT-----T-TTTT-TCACAACTAT-AAT-T-A-ATTATATTACA-TACAAT----T--ATAT---TTTAG--GGTG-TGTTTGTAAATTGTGAGCTGG-ACACTT--AATTAAAGTTTTGAAGAGCCTTAGTACTTTTACAGCTGTTG---GGGCAAGTC--AAGGCA-TGTTAGC-AGTGGTCT--TTCACATCTTTGTCAGAA-CAAAACACTTGA-AGA-A-TTCCAAA--T-GG-ATGTTTTGGGGGGAAGTTTTT--CA-GCTGAGA-TATGT--T-AGGTCAATACACAGTGA---AT-TGAGC-CAACCAATT-TGCTCT--GTACTG-C-TGGTAAAT-GAT--ATTGGA-GGG-TTGAAGC-A-T-ACCATAGC-TCATGTCA-ACTTGA-CACCCACTCTTTTCC---TTCAAC-TC--CT--ATTTT--GGGAG-TGGAAAGCAG-A-A-AATT-ATATTGTGA--------TT-TTTAATTGCT-TG-GAT-----CTCTG-TT-TATGTCTGTTCCTAAC---C---AC-CTTGAA-T--TGACCA--GTGTTCTTG--AAACTTGGT-TGTGTTTAACGACATTTAAAT--ACA--TAAT------ATAG---G----TGG-TCTTCTTAAATCT-TGACCAGGTCA-G-AA-CC--ATGGCACA-GGTA-GAAT--TAT-ACCAGTGATGTTATG-TTTAC--C-TGT-TTATT-AATT-GTT--T--A--TTATTTTTTTGTAAATCTATAATTTGTTGTGT-AGAGG-T--g
gi|5 : GGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAAT---------------GCCGG-CAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACAATGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA---C-TA----CAC--TG-GTCAA--TACATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TCAGGTT-----T-TTTT-TCACA-CTTT-AAT-TCA-ATTTA-TTACATCA--------TT-AT-T---TTTAGTGAGT-----TTGTAAATTGTTG-CTGG-ACACTTCTAAATAAAGTTTTAAGCAG-CTTAGCACTT--ACAACTGTTT---G--CA-GTC--AAG-CA-TGTT-GC-AGTGGTCC--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAA---T-GGGATGTTT-----GGA-----TTT-CATGCTGA-A-TATGC-GT-AGGTCAATA-ACA-TGATT-AT--GA-C-CAA--AATT-TG-TCT--T-ACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TTC-CT--ATTTT--GGG-G-TGGAA--CAG-A-ATA-TC-AT-TTGTG-A----TA--T-TTTA-TTGCT-TT-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---tagaaggagcttgtctcgaattttgtaaactgt
gi|6 : GGTTGGCAAAATGCCT-GCATTTATCG-ATATT-TTCCA-TGACAGT-GGCAA-ATACATGGTTATGTTTACCG-TAAATTCAC--A-GTAAAATGC--GGCAAA-TA-CT-G-GT-CA-AT---TGGAAA-TCAACCACA-TGGAA-TATT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAACTATATA----TAC--TGCGTCAAACTAGATTTATAT--TGCTT---CAG-ATTGAAGTTATTCC-TATGTTA--ACTGAAT---TATG-A-GTATTT-TAAGC--CTT-TT-TTTTATCACA-CTTT-AATATTA-ATTCA-TTACA-CA--------CCAAT-TAAATTT--TAGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAATTTT-AAGAGTTTTAGCACTT--ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGAT----TT--CATGCTGA-A-TATGT-GT-AGGTTAATA-ACAGTGATT-
gi|7 : ACTTGA-TACCC-ATCTATTTACGTTTCA-C-TTGGCTTAGTTTT--GGG-GGTAGAAA-CAG-GGA-A-GT-AT-TATTGAA----T--TTATTTG-TTAAT-TGTAATTCATACCCTACTT-TATGTCTGTA-CTAACGAGC---ACGCCTGAA-TGCTTGACATAGTTTTCTTGTAAGACCT-ATGCGT-TT--GTG--GTTTGTAAAGCCAAACAACTTTATGATACCAAA----TGGGTCTTCTTA--GCTACGGCCATGT-G-GGCAACC--AT-GCAC--TGTAAAAGT--TAT-ACCAGTGGAG-GCTGTTTGAC--C-TGT--TATTAAATTTGTT--TCA---TT-TTTTTTTTT-A-TCTTAA--TTAATGTATTGGAGG-TTTAA-ATT-AA--AGCATTCAACT---GTTAAA--TGGTTTCAAC-CTAAGA-TTTAATCCTGT-GCTAAT-----T--TGATT--TAA-TCAATTT-T-A--TGT---A--TACAAAGT-A-AT-AAGAAT-T-ATTTTAGATTT-
gi|8 : G-TATGTTT-AC--C-TGTAG-ATTAATTT-GTTCGTAA------TTTTTTTGT-AATCTTTTATTTGT-GTA--GGAGG-T--TATAGT-GA--AATATTCAACT---GTTAAAAGT--TTTCAGCGCTAGGA-TTTAA-CCTGTTG--GATAA---T--TTATT--TAA-TCAATTTCTAAGATGT-TAAATCACAA--TCG-ATATATAGTGT-CTTTTAGATTTCACTTTTGATTT-TAC--TTT-G-A-TTGTTGA--G--C-TATA-A--TTTA-CTTA-ACAG-TTTCAA-TTTAC------------GTATTTGC--ACTTGAG-TCTTATTTTGCACAGT---------ACCGGTAA--TGCCGGTG-T-AA-TAC--AGGG-G-T--GGAAT-tacccgactctttcgatttga
gi|9 : A-AGT-CA--AATATTCAACTACTGTTAAAAATG-TTTCAGC-CTAGGA-TTTA-TCCTGT-G--AATCA---TGTTGATT--TAAATCACATT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGA-TT-ATCTT-GATTTACAC-TTTT-GCAATTGTTGAA-GCTC-TATA-AATTTTA-CTTT-AAAG-TT-CAATTTGA-CAGTA---------ATTTGCCAACTTGAGTTCTTATTT-G--CAGTCCGGTAAATA-CGGTAAA-TTCCGGCGGT-AA-AACC-AGGGCG-TGGGGAATCTTACCGCCCAACCCT
Alignments
lowQualScore : 111 1 1 55555555555555555 111 111 111 1111 11 1 111 22 111 3333333 111 666666666666666666 111 1 11 111 1 1 111 111 11111 22222 11 111 111 11111 11 1111 11 3333333333333 11 11111 11 1111111 1111111111 11 1111111 555555555555555555555555555555 111 111 11 11 11 11 33333333333 222 111 1 11 111111 22 11 22222222222 11 1 1111
lowQualScore : 6 5 5 0 5 77 77 1 88 0 000 2 1 5 1 5 22222222222222222 5 5 5 5 5 5 000 77 5 7 222 99 6 6 3 99 222 5 2222 77 5 33 1 77 5 000 5 5 5 33 000 5 5 77 5 7777777 5 5 5 5 000 5 777 6 222222222222222222 55 666 3 6 111 6 8 3 3 88 444 6 6 999 3 6 6 99 1 3 66 5 66 5 5 333 333 5 5 99999 22222 11 0 5 5 66666 5 55 444 444 77 5 5 22222 5 5 55 5 5 77 5 5 5 5 5 5 5 66 1 5 33 77 1 0000 5 5 99 666 5 6 6 6 3333333333333 6 6 33 66666 7777 55 8888888 8 8 8888888888 0 0 11 0 8 8 8 8888888 777777777777777777777777777777 333 9 8 999 8 8 11 8 33 66 11 8 6 99 3 3 99 6 7 7 6 88888888888 6 3 888 55 888 6 99 6 2 6 99 111 5 6 3 6 1 6 55 3 111111 99 6 3 6 99 6 99 99 6 6 6 6 3 7 6 3 8 8 66 8 8 0 88 11 8 8 0 1 8 8 8 8 8 33333333333 33 6 6 66 11 2 4 0 2 4444 8 8 6 6 6 99 6
lowQualScore : . . . . . .. .. . .. . ... . . . . . ................. . . . . . . ... .. . . ... .. . . . .. ... . .... .. . .. . .. . ... . . . .. ... . . .. . ....... . . . . ... . ... . .................. .. ... . . ... . . . . .. ... . . ... . . . .. . . .. . .. . . ... ... . . ..... ..... .. . . . ..... . .. ... ... .. . . ..... . . .. . . .. . . . . . . . .. . . .. .. . .... . . .. ... . . . . ............. . . .. ..... .... .. ....... . . .......... . . .. . . . . ....... .............................. ... . . ... . . .. . .. .. .. . . .. . . .. . . . . ........... . . ... .. ... . .. . . . .. ... . . . . . . .. . ...... .. . . . .. . .. .. . . . . . . . . . . .. . . . .. .. . . . . . . . . . ........... .. . . .. .. . . . . .... . . . . . .. .
lowQualScore : 7 7 7 1 7 11 11 4 77 7 000 0 4 0 4 7 00000000000000000 7 7 7 7 7 7 000 99 7 5 555 22 7 7 2 22 333 7 1111 99 7 66 4 99 7 000 7 7 7 44 000 7 7 99 7 1111111 7 7 7 7 777 7 777 7 000000000000000000 77 555 3 7 888 0 8 8 8 66 000 7 7 888 3 7 7 22 7 3 99 0 99 0 0 555 111 0 6 44444 55555 99 4 0 0 77777 7 11 333 333 99 7 7 00000 7 7 99 7 7 99 7 7 7 7 7 0 0 44 4 7 66 99 7 0000 7 7 33 777 7 7 7 7 3333333333333 7 7 33 77777 5555 88 9999999 0 0 8888888888 6 8 00 8 0 0 0 8888888 222222222222222222222222222222 888 0 0 222 0 0 00 0 66 44 00 0 0 88 2 2 22 7 3 3 7 88888888888 7 2 000 22 000 7 22 7 5 7 22 777 7 7 3 7 7 7 88 2 888888 22 7 2 7 22 7 22 22 7 7 7 7 5 3 7 8 0 0 00 0 0 8 88 00 0 0 8 4 0 0 0 0 0 66666666666 00 7 7 88 00 8 3 7 2 0000 0 0 7 7 7 22 7
consensus : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA-TGCCGGGCAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACANTGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TAAGCTTCTT-TT-TTTT-TCACA-CTTT-AAT-TTA-ATTNN-TTACA-CA--------T--AT-T---TTTAGTGGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAGTTTTNAAGAGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGT-GT-AGGTCAATA-ACAGTGATT-AT-TGA-C-CAA--AATT-TG-TCT--TTACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTT--GGG-G-TGGAA--CAG-A-A-A-TC-AT-TTGTGAA----TGATT-TTTA-TTGCT-TG-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T--TGGACA--GTTTTCTTG--AAACTT-GT-TGT-TTTAACG--ATTTATAN--CCA--TAAC------ATAC---A----TGG-TCTTCTTATAACT-TGACCAGGT-G-G-CA-CC--AT-GCACA-GGTAGGAAT--TAT-ACCAGTGATG-TATGTTTTAC--C-TGTATTATTAAATT-GTT--TAAA--TT-TTTTTTTGT-AATCTTNAATTTGTTGTAC-GGAGG-T--AA-AGT-GA--AATATTCAACT---GTTAAAAATG-TTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGATTT-ACTTT-GATTT-CACATTTT-G-AATTGTTGAA-G--C-TATA-AATTTTA-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAA-TGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
Reference ( family-51 ) : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA-TGCCGGGCAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACANTGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TAAGCTTCTT-TT-TTTT-TCACA-CTTT-AAT-TTA-ATTNN-TTACA-CA--------T--AT-T---TTTAGTGGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAGTTTTNAAGAGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGT-GT-AGGTCAATA-ACAGTGATT-AT-TGA-C-CAA--AATT-TG-TCT--TTACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTT--GGG-G-TGGAA--CAG-A-A-A-TC-AT-TTGTGAA----TGATT-TTTA-TTGCT-TG-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T--TGGACA--GTTTTCTTG--AAACTT-GT-TGT-TTTAACG--ATTTATAN--CCA--TAAC------ATAC---A----TGG-TCTTCTTATAACT-TGACCAGGT-G-G-CA-CC--AT-GCACA-GGTAGGAAT--TAT-ACCAGTGATG-TATGTTTTAC--C-TGTATTATTAAATT-GTT--TAAA--TT-TTTTTTTGT-AATCTTNAATTTGTTGTAC-GGAGG-T--AA-AGT-GA--AATATTCAACT---GTTAAAAATG-TTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGATTT-ACTTT-GATTT-CACATTTT-G-AATTGTTGAA-G--C-TATA-AATTTTA-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAA-TGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|1 : AGGGTTGGCAAAATGCCG--CATTTATCC-ATATT-TTACA-TGCCAGTTGGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAAATGCCGGGCAAAATA-CTTGCGT-CA-AT---TG--A--TAAACCACTCTGGAA-T-TT--ATATATTTTAACTTTCTTTTG-GTTAG--TTTTAA--AC-TA----CAC--TG-GTCAA---AGATTT-TAT--T-CTT---AAGGATTGAAGTTATTCC-TAT-TTAGTACTGAAT---TATG-A-GT--TT-TAAGCTTCCTCTT-TTTT-TCACA--TTT-AAT-TTA-ATTAT-TTACA-CA--------T--AT-T---TTTAGTAG-TG-T-TTTGTAA-TTGTTTGCTAA-ACACTTCAAAATAAAGTTATTA-GAGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTCCAAAGGCA-TCTT-GC-AGTGGTCT--T-CAC-TCTTTG-CA--A-CAA--CACT-GA-AGA-ATTTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGTTGT-AGGTCAATA-ACAGTGATT-AT-TGA-CACAA--AATT-TG-TCT--TTCCTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATTGC-TCGAGTCATACTTGA-CACCC-C-CTTTTTCC-TTGCAAC-TT--CT--ATTT---GGG-G-TGGAA--CAG-A-A-A-TC-AT-TTGTAAA----TAATT-TTTA-TTGCT-TG-AGT-----CTCTG-TTATATGTCTGT--CTAAC---TCTTAC-CATGAAAT--TGGACA--GTGTTCTTG--AAACTT-GT-TGT-TTTAACA--ATTTATAC--CCA--TAAC------ATAT---ACTATTAG-T-TTCTTATAACT-TGACCAGGT-GTG-CA-CC--AT-GCACAAGGTAGTAAT--TAT-ACCAGTGATG-TATGTTTTAA--C-TGTATTATCAAATT-GTT--TAAAAATT-TTTTTTTGT-AATCTTAATTTTGTTGTA--GGAGG-T--AA-AGTCAA--AATATTCAACT---GTTAAAA-TG-TTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TATAA--T-G-ATAAAGAAT-T-AATTTATATTT-ACTTC-GATTT-TACATTTTTG-AATTGTTGAA-G--C-TATA-AATTTAA-TTTA-AAAG-TT-CAA-TTGACCAGTATTGCCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAATTGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|10 : -CG-GTC--AAGGCAATGTT-GC-AGTGGTCT--TTCACCTCTTTGTCA--AACAA--CACT-GA-AGA-A-TTCCAAAATT-GGGATGTTT-----G-A-----TTTTCATGCTAA-T-TATGT-GTTAGGTCAATA-ACAGTGATT-A--TGA-C-CAA--AA-T-TG-TTTTCTTACTG-CGTG-TAAAT-G-T--ATTGGA-GGGTTTGAAGCCATT-ACCATAGCTTCATGTCATACTTGACCACCC-
gi|11 : -TA----TAC--TG-GTCAA--TAAATTT-TCT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-CAT-TACTGAAT---TATG-A-GT--TT-GAAGC--CTT-TT-TTTT-TTACA-CTTTAAAT-TTACATTTA-TT
gi|12 : CTCGGG-CCTTGTTT-AN-NNNNNNNNNNNNNNNNNNNNNN-NNCCGGCTGT-AAATACC-AGGG-G-T--GGAAT-TTACCCTCCAACCCTtaa
gi|13 : AGC-TCATGTCATACTTGA-CACCC-CTCCTTTTCC-TTTCAACTTT--CT--ATTTTTAGGG-T-TAGAA--CAG-G-A-
gi|14 : ATTTATCC-ATATT-TCCCA-TGCC-----------------------TT---CGGTAAATGC-C--A-------------GCAAA-TC-CT-G-GT-CA-GC---TG--AA-TTGACCAgaatattttg
gi|15 : aaaaccctgTGATT-ATATGA-C-CAA--AATT-TG-TCT--TGCTTG-C-TG-CAAAT-G-T--ATTTGA---G-TTGAAACCA-T-
gi|16 : GTCA--A-CAA--CACT-GA-AGA-----------------ATGTTT-----GGAT----TT--CAAGCTGA-A-T
gi|17 : -AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|2 : GGTTGGCAAAATGCCTTGCATTTATTCGATATT-TTCCAATGACAGT-GGCAACATAC--AGT---ATTTACTG-TAAATTC-CCTATGTAAA-TGCCG--CAAA-TAGCT-G-GT-CAGAT---TG--AA-TCAACCACAATGGAAGT-TT--ATATATTT-AACTGTTCTTTGAGTTAG--TTTTTA--AC-TAGATATAC--TG-GTCAA--TAGATTT-TATGCT-CTT---CAG-ATTGAAGTTATTCCCTAT-TTA--ACTGA-----TATG-AAGT--TT-TAAGCCCCTT-TTATTTT-TCACA-CTTT-AAT-T-A-ATTCA-TTACA-CAAGTCCAATT--AT-TG--TTTAGTGAGTGCT-TTTGTAA-TTGTTGGCTGG-ACACT-CTAA-TAAAATTTTTAAGAGTTTTAGCACTTT-ACAACTGTTTTTGGG-CA-GTC--GAGGCAATGTT-GCCAGTGGTCTATTCCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCAAAA--TAGGGATG-TT-----GGA-----TT--CATGCTGA-ATTATGT-GT-AGGTTAATA-ACAGTGATTAATATGA---CAA--CATT-TG-TC---TTACTGTC-TG---AAT-G-TCAATTGGAGGGG-TTGAAG-CA-T-ACCATAGC-TCAT-TCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATATT----G-G-TGGAA--C-G-A-A-A-TCAAT-TTG--------TGATTATTTA-TTGCTCTT-GAT-----CCTGG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T----GATG--GGTTTC--G--AAACTT-GT-TGT-TTTAACA--ATTTATAC--C-----AAC------AT-----A----TGG-TCTTCTTGTGAAT-TGACCAGGT-T-G-CA-CCTGAT-GCACA-GGTAGGAATGATAT-ACCAGTGATG-TATGTTTTAC--CTTGTATTATT-AATT-GCT--TAGA--AT-TTTTTTTAT-AATCTTT-ATTTGTTGTA--GGAGGTT--AA-A---GA--AAT-TTCAAAC---GTGTAAAATG-TTTCAGCTCTAGAATTTTAACCCTGT-GT-AATAATTGT--TGATTTATAA-TCA--TT-TAA--TGTGTAA--TACAA--T-GTATAAAGAAT-TAATTTTAG-TTT-ACTTT-GATTT-CACA-TTT-G-AATTGTTGAACG--CTTATACAATTTTACTTTACAAAGTTT-CAA-TTTACCAGTATTTGCCG----------ACTTGAG-TCTTATTT-GC-C-GTCC-GTAAGT
gi|3 : AGGGTTGGCAAAATGCCG-GCAGG-ATGC-CTAAG-T-CCA-TGC-AG--GGCAA-AT-C-CG-T---ATT-ACCG-TAA-TTC-C---------------GGCAAA-TA-CT-G-GT-CA-ATTAATG--AACTCAA-CACACTGGAA---TT--ATATTATT-AA--GGTC-TTG-G--AGTCTTCTAA--CC-TA----TAC--TG-GCCAC--TAAA--T-TAT--T-GCT---AAG-A--GAAGTTA---C-TAT-TTA----TGAATAGATATA-G-TT--TT-TAAGC-------T-TTTT-TCACA-C--T-AA----A-ATTAT-TTACA-CA-----------A--T---TTCA--GGGTG---TTTGTAA-TTG-TGGCTGGCACACg
gi|3 : --A-CGA--CACT-GGGAGACGATACCAA---T-GG-ATGCTTCT---GGA-----TC--AGTG-----A-TATG-----AGGTAAA-----AATGAT------GA-CACAC--AATTGTG-T------AC-G-C-T--TGAATAG-T--AT-GGA-GGG-TTGAAGCCA-CGACCA-AGC--CATGTCATACTTGA-CA-CC-CTCTTTTCCA-TC---AC-TC--CC--AT------GG-G-TGTAAC-CAGAA-A-A-TC-AT-TTATCAACAGGTGACT-ATTA-TTGCT-T--GAT-----CTCTG----TA-GTCT-T--CTAA----C---AC-CCTGAA-T--TG---A--GTTCCTTTG--AA---T-AT-GGT-CCC-------TCTATAA--CT---TGAC---------C---A----GGG---------CAACC-TGAC--------G-CA-C------------GGTA--CAT--TATGACCAGTGA-G----AGTTTACCAC-TGTATT-TCA---T-GTT--AACA--------TGTTGT-CCTCTTGAATCTG-CGTGC--GAGG-T--AC-AGT-GACGACTATTCAACT---GTTAAAAATG-TTACAGC-CTAGGA-TTTAAT-CTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAA--T-A-TTTAGA-TT-AC-TT-GATTT-CAC-TTTT-G-AATTGTTGAA-G--C-TATA-AATTTAC-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTA-TTGCC-ACTTGAG-TCTTATTT-GC-CA--TCGGTACATA-CGGTAAA--ACCGGCGGTAAA-TACCTAGGG-GCT--GGAAT-TTACCGCCCAACCCTaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcacgacactgggagacgataccaatggatgcttctggatcagtgatatgaggtaaaaatgatgacacacaattgtgtacgcttgaatagtatggagggttgaagccacgaccaagccatgtcatacttgacaccctcttttccatcactcccatgggtgtaaccagaaaatcatttatcaacaggtgactattattgcttgatctctgtagtcttctaacaccctgaattgagttcctttgaatatggtccctctataacttgaccagggcaacctgacgcacggtacattatgaccagtgagagtttaccactgtatttcatgttaacatgttgtcctcttgaatctgcgtgcgaggtacagtgacgactattcaactgttaaaaatgttacagcctaggatttaatctgtgaataattgatttaatcaattttaatgttaatacaatgataaagaatatttagattacttgatttcacttttgaattgttgaagctataaatttactttaaaagttcaattgaccagtatttgccggtattgccacttgagtcttatttgccatcggtacatacggtaaaaccggcggtaaatacctaggggctggaatttaccgcccaaccctg
gi|4 : agggttggcaaaatgccggcaggatgcctaagtccatgcagggcaaatccgtattaccgtaattccggcaaatactggtcaattaatgaactcaacacactggaattatattattaaggtcttggagtcttctaacctatactggccactaaattattgctaagagaagttactatttatgaatagatatagtttttaagcttttttcacactaaaattatttacacaatttcagggtgtttgtaattgtggctggcacacaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcCAAAATGCAG-GCATTTATCC-ATATTGTTCCA-TGCCAGT-GGCAA--TAC-CGGT---ATT-AC-GGTAA-TTC-C--A-GTAAA--GCCGG-CAAA-TT-CT-G-GTTCA-AC---TG--AA-TTAACCACATGGGAA-T-TTTAGTATATTT-AACTGTTCTTT------------TAG--AC-CA----TACACTG-GTCAAA-TAGATTTGTAT--T-CTTTAAAAG-ATTGAAGTTATTC--TAT-TTAATTCTAGAT---TATGGA-GT--TTGTAAGCTT-----T-TTTT-TCACAACTAT-AAT-T-A-ATTATATTACA-TACAAT----T--ATAT---TTTAG--GGTG-TGTTTGTAAATTGTGAGCTGG-ACACTT--AATTAAAGTTTTGAAGAGCCTTAGTACTTTTACAGCTGTTG---GGGCAAGTC--AAGGCA-TGTTAGC-AGTGGTCT--TTCACATCTTTGTCAGAA-CAAAACACTTGA-AGA-A-TTCCAAA--T-GG-ATGTTTTGGGGGGAAGTTTTT--CA-GCTGAGA-TATGT--T-AGGTCAATACACAGTGA---AT-TGAGC-CAACCAATT-TGCTCT--GTACTG-C-TGGTAAAT-GAT--ATTGGA-GGG-TTGAAGC-A-T-ACCATAGC-TCATGTCA-ACTTGA-CACCCACTCTTTTCC---TTCAAC-TC--CT--ATTTT--GGGAG-TGGAAAGCAG-A-A-AATT-ATATTGTGA--------TT-TTTAATTGCT-TG-GAT-----CTCTG-TT-TATGTCTGTTCCTAAC---C---AC-CTTGAA-T--TGACCA--GTGTTCTTG--AAACTTGGT-TGTGTTTAACGACATTTAAAT--ACA--TAAT------ATAG---G----TGG-TCTTCTTAAATCT-TGACCAGGTCA-G-AA-CC--ATGGCACA-GGTA-GAAT--TAT-ACCAGTGATGTTATG-TTTAC--C-TGT-TTATT-AATT-GTT--T--A--TTATTTTTTTGTAAATCTATAATTTGTTGTGT-AGAGG-T--g
gi|5 : GGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAAT---------------GCCGG-CAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACAATGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA---C-TA----CAC--TG-GTCAA--TACATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TCAGGTT-----T-TTTT-TCACA-CTTT-AAT-TCA-ATTTA-TTACATCA--------TT-AT-T---TTTAGTGAGT-----TTGTAAATTGTTG-CTGG-ACACTTCTAAATAAAGTTTTAAGCAG-CTTAGCACTT--ACAACTGTTT---G--CA-GTC--AAG-CA-TGTT-GC-AGTGGTCC--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAA---T-GGGATGTTT-----GGA-----TTT-CATGCTGA-A-TATGC-GT-AGGTCAATA-ACA-TGATT-AT--GA-C-CAA--AATT-TG-TCT--T-ACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TTC-CT--ATTTT--GGG-G-TGGAA--CAG-A-ATA-TC-AT-TTGTG-A----TA--T-TTTA-TTGCT-TT-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---tagaaggagcttgtctcgaattttgtaaactgt
gi|6 : GGTTGGCAAAATGCCT-GCATTTATCG-ATATT-TTCCA-TGACAGT-GGCAA-ATACATGGTTATGTTTACCG-TAAATTCAC--A-GTAAAATGC--GGCAAA-TA-CT-G-GT-CA-AT---TGGAAA-TCAACCACA-TGGAA-TATT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAACTATATA----TAC--TGCGTCAAACTAGATTTATAT--TGCTT---CAG-ATTGAAGTTATTCC-TATGTTA--ACTGAAT---TATG-A-GTATTT-TAAGC--CTT-TT-TTTTATCACA-CTTT-AATATTA-ATTCA-TTACA-CA--------CCAAT-TAAATTT--TAGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAATTTT-AAGAGTTTTAGCACTT--ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGAT----TT--CATGCTGA-A-TATGT-GT-AGGTTAATA-ACAGTGATT-
gi|7 : ACTTGA-TACCC-ATCTATTTACGTTTCA-C-TTGGCTTAGTTTT--GGG-GGTAGAAA-CAG-GGA-A-GT-AT-TATTGAA----T--TTATTTG-TTAAT-TGTAATTCATACCCTACTT-TATGTCTGTA-CTAACGAGC---ACGCCTGAA-TGCTTGACATAGTTTTCTTGTAAGACCT-ATGCGT-TT--GTG--GTTTGTAAAGCCAAACAACTTTATGATACCAAA----TGGGTCTTCTTA--GCTACGGCCATGT-G-GGCAACC--AT-GCAC--TGTAAAAGT--TAT-ACCAGTGGAG-GCTGTTTGAC--C-TGT--TATTAAATTTGTT--TCA---TT-TTTTTTTTT-A-TCTTAA--TTAATGTATTGGAGG-TTTAA-ATT-AA--AGCATTCAACT---GTTAAA--TGGTTTCAAC-CTAAGA-TTTAATCCTGT-GCTAAT-----T--TGATT--TAA-TCAATTT-T-A--TGT---A--TACAAAGT-A-AT-AAGAAT-T-ATTTTAGATTT-
gi|8 : G-TATGTTT-AC--C-TGTAG-ATTAATTT-GTTCGTAA------TTTTTTTGT-AATCTTTTATTTGT-GTA--GGAGG-T--TATAGT-GA--AATATTCAACT---GTTAAAAGT--TTTCAGCGCTAGGA-TTTAA-CCTGTTG--GATAA---T--TTATT--TAA-TCAATTTCTAAGATGT-TAAATCACAA--TCG-ATATATAGTGT-CTTTTAGATTTCACTTTTGATTT-TAC--TTT-G-A-TTGTTGA--G--C-TATA-A--TTTA-CTTA-ACAG-TTTCAA-TTTAC------------GTATTTGC--ACTTGAG-TCTTATTTTGCACAGT---------ACCGGTAA--TGCCGGTG-T-AA-TAC--AGGG-G-T--GGAAT-tacccgactctttcgatttga
gi|9 : A-AGT-CA--AATATTCAACTACTGTTAAAAATG-TTTCAGC-CTAGGA-TTTA-TCCTGT-G--AATCA---TGTTGATT--TAAATCACATT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGA-TT-ATCTT-GATTTACAC-TTTT-GCAATTGTTGAA-GCTC-TATA-AATTTTA-CTTT-AAAG-TT-CAATTTGA-CAGTA---------ATTTGCCAACTTGAGTTCTTATTT-G--CAGTCCGGTAAATA-CGGTAAA-TTCCGGCGGT-AA-AACC-AGGGCG-TGGGGAATCTTACCGCCCAACCCT
blockSeqs : T G G A T CA A AT TAT T G A G A CTATGTAAATGCCG . G . . T G TAA GA C A GT TA . A T TC CTA A GATA AC C AC G GC G TAA . C G AT AGA G A AT G CCCTTT A A A A ATT C ATA T AGTCCAATTATTG GT CT A C TCT T T A T TT TTG G A A A A C AT T C GA A AA T G CGA AAT A G TGGGG AGTTT TT G T TGTT C TA TAT CA CC G C TTCTT T G GT A A CA G T T G T C A CG T T GG TA T TTAG A G AG AA T A A A CAACAGGTGACT A C GT TCATA CTT TC GAGC G . GCTTGACATA TA G G G TAACGAC AAGCCAAACAACTTTATGATACCAAA GTC T A CA G A TG G A GG GA G T TT T T CA T A A T TAGAAT A A GAA TT TTG T TT T G . CG ACT A G T T C T CT A TTGT TA A A C GA G AT AG C T G A T T C T T A A . C AC CT T C T C C T T T TTTGCCGGTA CA T T CA NN N N N NNN A A T C C GG C
blockSeqs : . . . . T A A C . T G A T . AGTAAAATGCGG . . . . . . . . . C TA . . . T . A . . . . A A . . . . . . T . . . . . CTTT . . . . TT . TA . CAATTATAT GT TG A . TCT A G A C T . . . G A . . . C A . . . . . AA A . G CT T T . . TGT . T TAT GC . . . TTG . . T . . . . . . . . . . C T . C . A TG . . C GG . . . . GAATTTA . . T . TT A C . . TGACCA . . . . TAACA TACATAATATAGG TC C . T . . . . A AA . . T T G T . . A A . TATTA . C TAA TT TA . . . T . . . A . G . T . T A TGT . . A . . . . . . . . . T T . T . . T . . A . . . A . . . . . TTTGCCG C . . N AG C G C ATT . . . . . . .
blockSeqs : . . . . T A A C . T G A T . AGTAAAGCCGG . . . . . . . . . T T . . . T . C . . . . . . . . . . . . T . . . . . CTTT . . . . TC . CA . CCAATTAAA G T . . CT A A G T . . . . A . . . . T . . . . . . AA A . G . T . . . CGT . T TT C . . . TGT . . C . . . . . . . . . . C T . . . T TG . . A G . . . . TGATTA . . G . TT . C . . GATG . . . . GTG ACTTGACCA TC A . G . . . . . G . . A G T T . . A A . TCATT . A TTA AT G . . . G . . . G . . . T . . A T . . A . . . . . . . . . T T . C . . T . . A . . . T . . . . . GTAT . . . C AG T G . AA . . . . . . .
blockSeqs : . . . . T A A C . . . A T . GCCGG . . . . . . . . . A T . . . . . A . . . . . . . . . . . . . . . . . . TT . . . . T . AT . TTATT T . . . T . . A . . . . . A . . . . T . . . . . . AA A . G . . . . . TGT . T T C . . . TT . . T . . . . . . . . . . A T . . . T TG . . . A . . . . GATAT . . T . TT . C . . TGA . . . . C CCAACATA . . . . . . . . . . . . . T T G . . . . . CGTAA . A TA C C . . . G . . . A . . . T . . C T . . C . . . . . . . . . T . . . . . . . . . . . . T . . . . . AT . . . C G C . . TG . . . . . . .
blockSeqs : . . . . . . . . . . . . T . AG . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TT . . . . T . TA . AT . . . . . . G . . . . T . . . . . . A . . . . . . . . TT . T T C . . . TT . . T . . . . . . . . . . C T . . . T T . . . A . . . . GATT . . . . . . . . . . . . . . AACA . . AA T G . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . GG . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CA . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqCons : T* AGTAAAGCCGG****** T* CTTT*** TT* CAATTATAN********* T** T* A** TGT** TT* C** TG** CGATTA******* TT** C****** TGACG***** CGCG*** NCGACANA********************** TC* *** ** TNTTA****** T* NTT******** C* AN**
originalCons : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA-TGCCGGGCAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACANTGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TAAGCTTCTT-TT-TTTT-TCACA-CTTT-AAT-TTA-ATTNN-TTACA-CA--------T--AT-T---TTTAGTGGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAGTTTTNAAGAGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGT-GT-AGGTCAATA-ACAGTGATT-AT-TGA-C-CAA--AATT-TG-TCT--TTACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTT--GGG-G-TGGAA--CAG-A-A-A-TC-AT-TTGTGAA----TGATT-TTTA-TTGCT-TG-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T--TGGACA--GTTTTCTTG--AAACTT-GT-TGT-TTTAACG--ATTTATAN--CCA--TAAC------ATAC---A----TGG-TCTTCTTATAACT-TGACCAGGT-G-G-CA-CC--AT-GCACA-GGTAGGAAT--TAT-ACCAGTGATG-TATGTTTTAC--C-TGTATTATTAAATT-GTT--TAAA--TT-TTTTTTTGT-AATCTTNAATTTGTTGTAC-GGAGG-T--AA-AGT-GA--AATATTCAACT---GTTAAAAATG-TTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGATTT-ACTTT-GATTT-CACATTTT-G-AATTGTTGAA-G--C-TATA-AATTTTA-TTTA-AAAG-TT-CAA-TTGACCAGTATTTGCCGGTATTTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAA-TGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
finalCons : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-CAGTAAAGCCGG------CAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACANTGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTAT-ACTGAAT---TATG-A-GT--TT-TAAGCCTTT---T-TTTT-TCACA-CTTT-AATTT-A-ATTNN-TTACA-CACAATTATAN---------TTTAGTGGGTGT--TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAGTTTTNAAGAGTCTTAGCACTTT-ACAACTGTTT---GG-CA-GTCA--AGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTCA--A-CAA--CACT-GA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGTGT--AGGTCAATA-ACAGTGATT-ATT-GAC--CAA--AATT-TG-TCT--TTACTG-C-TG-TAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTTG--GG-G-TGGAA--CAG-A-A-A-TC-AT-TTGTCGATTA-------TTTA-TTGCT-TG-GAT-----CTCTGTT--TATGTCTGT--CTAACC------AC-CCTGAA-TTGACG-----GTTTTCTTG--AAACTT-GT-TGT-TTCGCG---ATTTATANCGACANA----------------------TGGTC-TTCTTATAACT-TGACCAGGT---G-CA-CC--AT-GCAC--GGTAGGAAT--TAT-ACCAGTGATG-TATGTTTTAC--C-TGTATTATTAAATT-GTTTNTTA------TTTTTTTGT-AATCTTNAATTTGTTGTAC-GGAGG-T--AA-AGT-GA--AATATTCAACT---GTTAAAAATG-TTTCAGC-CTAGGA-TTTAATCCTGT-G--AATAA---T--TGATT--TAA-TCAATTT-TAA--TGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGATTT-ACTTT-GATTT-CACT-TTT-G-AATTGTTGAA-G--C-TATA-AATTTTA-TTTA-AAAG-TT-CAA-TTGACCAGTANTT--------TTGCC-ACTTGAG-TCTTATTT-GC-CAGTCCGGTAAATACCGGTAAAN--CCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 1 444444444444444 111 111 111 1111 11 1 111 22 111 3333333 111 33333333333333 11 111 1 1 1 11111 1 1 111 11111 22222 11 111 111 11111 11 1111 11 44444444 111 11 11111 11 2222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 333333333333333 22 11 11 1111 222222222 222 11 111 1 11 111111 11 11 11 1 777777777777777777 1 1 222
lowQualScore : 6 5 5 0 5 77 77 1 88 0 000 2 1 5 222222222222222 5 5 5 5 5 5 5 5 000 77 5 7 222 99 6 6 3 99 222 5 2222 77 5 33 1 77 5 000 5 5 5 33 000 5 5 77 5 0000000 5 5 5 5 000 5 777 44444444444444 22 666 3 6 0 6 8 3 3 8 0 77777 6 99 3 6 6 99 1 3 77 5 66 5 5 777 333 5 99999 22222 11 0 5 5 66666 5 55 444 444 77 5 5 22222 5 5 5 0 5 5 77 5 5 4 5 5 5 5 55 0 5 1 5 33 77 1 0000 5 5 33 5 666 5 6 6 6 33333333 99 222 6 00 66666 6 6 55 8888888 8 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 8 6 8 555555555555555 8 77 66 11 8 6 99 3 3 99 6 3 2222 888888888 6 888 55 888 55 6 2 6 99 111 3 1 6 3 6 1 6 55 3 111111 99 6 3 6 99 6 99 99 6 6 6 6 3 6 6 66 55 1 6 0 8 8 11 8 0 1 8 8 6 8 333333333333333333 6 6 6 6 66 555 4 0 2 000 5 8 8 6 6 6 99 6
lowQualScore : . . . . . .. .. . .. . ... . . . ............... . . . . . . . . ... .. . . ... .. . . . .. ... . .... .. . .. . .. . ... . . . .. ... . . .. . ....... . . . . ... . ... .............. .. ... . . . . . . . . . ..... . .. . . . .. . . .. . .. . . ... ... . ..... ..... .. . . . ..... . .. ... ... .. . . ..... . . . . . . .. . . . . . . . .. . . . . .. .. . .... . . .. . ... . . . . ........ .. ... . .. ..... . . .. ....... . ................................................................................................... . . . ............... . .. .. .. . . .. . . .. . . .... ......... . ... .. ... .. . . . .. ... . . . . . . . .. . ...... .. . . . .. . .. .. . . . . . . . .. .. . . . . . .. . . . . . . . .................. . . . . .. ... . . . ... . . . . . . .. .
lowQualScore : 7 7 7 1 7 11 11 4 77 7 000 0 4 0 999999999999999 7 7 7 7 7 7 7 7 000 99 7 5 555 22 7 7 2 22 333 7 1111 99 7 66 4 99 7 000 7 7 7 44 000 7 7 99 7 6666666 7 7 7 7 777 7 777 77777777777777 33 555 3 7 6 0 8 8 8 0 6 88888 7 22 3 7 7 22 7 3 99 0 99 0 0 444 111 0 44444 55555 99 4 0 0 77777 7 11 333 333 99 7 7 00000 7 7 7 1 7 7 99 7 7 3 7 7 7 0 77 1 7 4 7 66 99 7 0000 7 7 66 7 777 7 7 7 7 55555555 22 777 7 33 77777 7 7 88 9999999 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 0 888888888888888 0 00 44 00 0 0 88 2 2 22 7 2 5555 222222222 7 000 22 000 88 7 5 7 22 777 5 7 7 3 7 7 7 88 2 888888 22 7 2 7 22 7 22 22 7 7 7 7 5 7 7 55 88 7 7 8 0 0 00 0 8 4 0 0 0 0 000000000000000000 0 7 7 7 88 888 3 7 2 000 0 0 0 7 7 7 22 7
consensus : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA--GC-CGG-CAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACANTGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TAAGC---C--TTTT-TTTT-TCACA-CTTT-AAT-TTA-ATTNN-TTACACA----C-AATTATATTTTAGTGGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAGTTTTNAAGAGTCTTAGCAC-TTTACAACTGTT-T---GGC-AGTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTC--AA-C--AACAC-TGA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGT-GT-AGGTCAATA-ACAGTGATT-AT-TGA-C-CAA--AATT-TG-TCT--TTACTG-C-T-GTAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTT--GGG-G-TGGAA--C-AG-A-A-A-TC-AT-TTGT--------GA--TTATTT--ATTGCT-TG-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T---TG-A-CG--GTNTTCTTG--AAAC--------TT-GT--TGTTTN----A-CG--A------TTTATACC---AACATA-------TG------G-TCTTCTTATAACT-TGACCAGG-T--G-GC-A-CCTGAT-GCACA-GGTAGGAAT--TAT-ACCAGTGATG-TATGTTTTAC--C-TGTATTATTAAA-TTGTTTA----TTA-TTTTTTTGT-AATCTTNAATTTGTTGTA-CGGAGG--TAA-AGT-GA--AATATTCAACT---GTTAAAAAT-GTTTCAGC-CTAGGA-TTTAATCCTG-TG--AATAA---T--TGATT--TAA-TCAATTT-TA--ATGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGA-TTT-AC-TTCGATTT--CACTTTTG-AATTGTTGAA-GC-T--ATA-AATTTTA-TTTA-AAAGTTTCAA-TTGACCAGTATT--------T-------TTGCC-ACTTGAG-TCTTA-TTT-GC-CAGTCCGGTAAATACCGGTAAAT-GCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
Reference ( family-51 ) : AGGGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAA--GC-CGG-CAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACANTGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA--AC-TA----TAC--TG-GTCAA--TAGATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TAAGC---C--TTTT-TTTT-TCACA-CTTT-AAT-TTA-ATTNN-TTACACA----C-AATTATANTTTAGTGGGTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAGTTTTNAAGAGTCTTAGCAC-TTTACAACTGTT-T---GGC-AGTC--AAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTC--AA-C--AACAC-TGA-AGA-AATTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGT-GT-AGGTCAATA-ACAGTGATT-AT-TGA-C-CAA--AATT-TG-TCT--TTACTG-C-T-GTAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATTTT--GGG-G-TGGAA--C-AG-A-A-A-TC-AT-TTGTC-------GA--TTATTT--ATTGCT-TG-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-T---TG-A-CG--GTTTTCTTG--AAAC--------TT-GT--TGTTTC----G-CG--A------TTTATANC---GACANA-------TG------G-TCTTCTTATAACT-TGACCAGG-T--G--C-A-CC--AT-GCAC--GGTAGGAAT--TAT-ACCAGTGATG-TATGTTTTAC--C-TGTATTATTAAA-TTGTTTN----TTA-TTTTTTTGT-AATCTTNAATTTGTTGTA-CGGAGG--TAA-AGT-GA--AATATTCAACT---GTTAAAAAT-GTTTCAGC-CTAGGA-TTTAATCCTG-TG--AATAA---T--TGATT--TAA-TCAATTT-TA--ATGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGA-TTT-AC-TTTGATTT--CACTTTTG-AATTGTTGAA-GC-T--ATA-AATTTTA-TTTA-AAAG-TTCAA-TTGACCAGTANT--------T-------TTGCC-ACTTGAG-TCTTA-TTT-GC-CAGTCCGGTAAATACCGGTAAA--NCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|1 : AGGGTTGGCAAAATGCCG--CATTTATCC-ATATT-TTACA-TGCCAGTTGGCAA-ATAC-CGGT---ATTTACCGGTAAATTC-C--A-GTAAAATGC-CGGGCAAAATA-CTTGCGT-CA-AT---TG--A--TAAACCACTCTGGAA-T-TT--ATATATTTTAACTTTCTTTTG-GTTAG--TTTTAA--AC-TA----CAC--TG-GTCAA---AGATTT-TAT--T-CTT---AAGGATTGAAGTTATTCC-TAT-TTAGTACTGAAT---TATG-A-GT--TT-TAAGCTTCC--TCTT-TTTT-TCACA--TTT-AAT-TTA-ATTAT-TTACACA---------TAT-TTTTAGTAG-TG-T-TTTGTAA-TTGTTTGCTAA-ACACTTCAAAATAAAGTTATTA-GAGTCTTAGCAC-TTTACAACTGTT-T---GGC-AGTCCAAAGGCA-TCTT-GC-AGTGGTCT--T-CAC-TCTTTG-C--AA-C--AACAC-TGA-AGA-ATTTCCAAA--T-GGGATGTTT-----GGA-----TT--CATGCTGA-A-TATGTTGT-AGGTCAATA-ACAGTGATT-AT-TGA-CACAA--AATT-TG-TCT--TTCCTG-C-T-GTAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATTGC-TCGAGTCATACTTGA-CACCC-C-CTTTTTCC-TTGCAAC-TT--CT--ATTT---GGG-G-TGGAA--C-AG-A-A-A-TC-AT-TTGTA-------AA--TAATTTTTATTGCT-TG-AGT-----CTCTG-TTATATGTCTGT--CTAAC---TCTTAC-CATGAAAT---TGGA-CA--GTGTTCTTG--AAAC--------TT-GT--TGTTTT----AACA--A------TTTATACCCATAACATA-------TACTATTAG-T-TTCTTATAACT-TGACCAGG-T--GTGC-A-CC--AT-GCACAAGGTAGTAAT--TAT-ACCAGTGATG-TATGTTTTAA--C-TGTATTATCAAA-TTGTTTAAAAATT--TTTTTTTGT-AATCTTAATTTTGTTGTA--GGAGG--TAA-AGTCAA--AATATTCAACT---GTTAAAA-T-GTTTCAGC-CTAGGA-TTTAATCCTG-TG--AATAA---T--TGATT--TAA-TCAATTT-TA--ATGT-TAA--TATAA--T-G-ATAAAGAAT-T-AATTTATA-TTT-AC-TTCGATTTTACATTTTTG-AATTGTTGAA-GC-T--ATA-AATTTAA-TTTA-AAAG-TTCAA-TTGACCAGTATTGCCCGGTAT-------TTGCC-ACTTGAG-TCTTA-TTT-GC-CAGTCCGGTAAATACCGGTAAATTGCCGGCGGT-AA-TACC-AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|10 : C-GGTC--AAGGCAATGTT-GC-AGTGGTCT--TTCACCTCTTTGTC--AAAC--AACAC-TGA-AGA-A-TTCCAAAATT-GGGATGTTT-----G-A-----TTTTCATGCTAA-T-TATGT-GTTAGGTCAATA-ACAGTGATT-A--TGA-C-CAA--AA-T-TG-TTTTCTTACTG-CGT-GTAAAT-G-T--ATTGGA-GGGTTTGAAGCCATT-ACCATAGCTTCATGTCATACTTGACCACCC-
gi|11 : -TA----TAC--TG-GTCAA--TAAATTT-TCT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-CAT-TACTGAAT---TATG-A-GT--TT-GAAGC---C--TTTT-TTTT-TTACA-CTTTAAAT-TTACATTTA-TT
gi|12 : CTCGGG-CCTTG-TTTANN-NNNNNNNNNNNNNNNNNNNNNN--NCCGGCTGT-AAATACC-AGGG-G-T--GGAAT-TTACCCTCCAACCCTtaa
gi|13 : AGC-TCATGTCATACTTGA-CACCC-CTCCTTTTCC-TTTCAACTTT--CT--ATTTTTAGGG-T-TAGAA--C-AG-G-A-
gi|14 : ATTTATCC-ATATT-TCCCA-TGCC-----------------------TT---CGGTAAAT---------------GC-CAG-CAAA-TC-CT-G-GT-CA-GC---TG--AA-TTGACCAgaatattttg
gi|15 : aaaaccctgTGATT-ATATGA-C-CAA--AATT-TG-TCT--TGCTTG-C-T-GCAAAT-G-T--ATTTGA---G-TTGAAACCA-T-
gi|16 : GTC--AA-C--AACAC-TGA-AGA-----------------ATGTTT-----GGAT----TT--CAAGCTGA-A-T
gi|17 : -AGGG-G-T--GGAAT-TTACCGCCCAACCCT
gi|2 : GGTTGGCAAAATGCCTTGCATTTATTCGATATT-TTCCAATGACAGT-GGCAACATAC--AGT---ATTTACTG-TAAATTC-CCTATGTAAAT-GC-CG--CAAA-TAGCT-G-GT-CAGAT---TG--AA-TCAACCACAATGGAAGT-TT--ATATATTT-AACTGTTCTTTGAGTTAG--TTTTTA--AC-TAGATATAC--TG-GTCAA--TAGATTT-TATGCT-CTT---CAG-ATTGAAGTTATTCCCTAT-TTA--ACTGA-----TATG-AAGT--TT-TAAGC---CCCTTTTATTTT-TCACA-CTTT-AAT-T-A-ATTCA-TTACACAAGTCC-AATTATTGTTTAGTGAGTGCT-TTTGTAA-TTGTTGGCTGG-ACACT-CTAA-TAAAATTTTTAAGAGTTTTAGCAC-TTTACAACTGTT-TTTGGGC-AGTC--GAGGCAATGTT-GCCAGTGGTCTATTCCAC-TCTTTGTC--AA-C--AACAC-TGA-AGA-AATTCAAAA--TAGGGATG-TT-----GGA-----TT--CATGCTGA-ATTATGT-GT-AGGTTAATA-ACAGTGATTAATATGA---CAA--CATT-TG-TC---TTACTGTC-T-G--AAT-G-TCAATTGGAGGGG-TTGAAG-CA-T-ACCATAGC-TCAT-TCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TT--CT--ATATT----G-G-TGGAA--C--G-A-A-A-TCAAT-TTGT--------GA--TTATTT--ATTGCTCTT-GAT-----CCTGG-TT-TATGTCTGT--CTAAC---C---AC-CCTGAA-----TG-A-TG--GGTTTC--G--AAAC--------TT-GT--TGTTTTA---A-CA--A------TTTATACC---AACATA-------TG------G-TCTTCTTGTGAAT-TGACCAGGTT--G--C-A-CCTGAT-GCACA-GGTAGGAATGATAT-ACCAGTGATG-TATGTTTTAC--CTTGTATTATT-AA-TTGCTTA----GAATTTTTTTTAT-AATCTTT-ATTTGTTGTA--GGAGGT-TAA-A---GA--AAT-TTCAAAC---GTGTAAAAT-GTTTCAGCTCTAGAATTTTAACCCTG-TGT-AATAATTGT--TGATTTATAA-TCA--TT-TA--ATGTGTAA--TACAA--T-GTATAAAGAAT-TAATTTTAG--TTT-AC-TTTGATTT--CACATTTG-AATTGTTGAACGCTT--ATACAATTTTACTTTACAAAGTTTCAA-TTTACCAGTA----------T-------TTGCCGACTTGAG-TCTTA-TTT-GC-C-GTCC-GTAAGT
gi|3 : AGGGTTGGCAAAATGCCG-GCAGG-ATGC-CTAAG-T-CCA-TGC-AG--GGCAA-AT-C-CG-T---ATT-ACCG-TAA-TTC-C---------------GG-CAAA-TA-CT-G-GT-CA-ATTAATG--AACTCAA-CACACTGGAA---TT--ATATTATT-AA--GGTC-TTG-G--AGTCTTCTAA--CC-TA----TAC--TG-GCCAC--TAAA--T-TAT--T-GCT---AAG-A--GAAGTTA---C-TAT-TTA----TGAATAGATATA-G-TT--TT-TAAGC---------T-TTTT-TCACA-C--T-AA----A-ATTAT-TTACACA------------ATTTCA--GGGTG---TTTGTAA-TTG-TGGCTGGCACACg
gi|3 : A-C--GACAC-TGGGAGACGATACCAA---T-GG-ATGCTTCT---GGA-----TC--AGTG-----A-TATG-----AGGTAAA-----AATGAT------GA-CACAC--AATTGTG-T------AC-G-C-T--TGAATAG-T--AT-GGA-GGG-TTGAAGCCA-CGACCA-AGC--CATGTCATACTTGA-CACCC--TCTTTTCCA-TC---AC-TC--CC--AT------GG-G-TGTAA--CCAG-A-A-AATC-AT-TTATCAACAGGTGA--CTATT---ATTGCT-TG--AT-----CTCTG-T---A-GTCT-T--CTAAC-------AC-CCTGAA-T-------------------TG--A-------------------GTTCC-----------------TTT--------GA-ATA-------TG------G-TCCCTCTATAACT-TGACCAGG----G--CAA-CCTGAC-GCAC--GGTA--CAT--TATGACCAGTGA-G----AGTTTACCAC-TGTATT-TCA--------TG----TTA-ACATGTTGT-CCTCTTGAATCTG-CGTG-C-GAGG--TAC-AGT-GACGACTATTCAACT---GTTAAAAAT-GTTACAGC-CTAGGA-TTTAAT-CTG-TG--AATAA---T--TGATT--TAA-TCAATTT-TA--ATGT-TAA--TACAA--T-G-ATAAAGAA--T-A-TTTAGA--TT-AC--TTGATTT--CACTTTTG-AATTGTTGAA-GC-T--ATA-AATTTAC-TTTA-AAAG-TTCAA-TTGACCAGTATT--------TGCCGGTATTGCC-ACTTGAG-TCTTA-TTT-GC-CA--TCGGTACATA-CGGTAAA--ACCGGCGGTAAA-TACCTAGGG-GCT--GGAAT-TTACCGCCCAACCCTaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcacgacactgggagacgataccaatggatgcttctggatcagtgatatgaggtaaaaatgatgacacacaattgtgtacgcttgaatagtatggagggttgaagccacgaccaagccatgtcatacttgacaccctcttttccatcactcccatgggtgtaaccagaaaatcatttatcaacaggtgactattattgcttgatctctgtagtcttctaacaccctgaattgagttcctttgaatatggtccctctataacttgaccagggcaacctgacgcacggtacattatgaccagtgagagtttaccactgtatttcatgttaacatgttgtcctcttgaatctgcgtgcgaggtacagtgacgactattcaactgttaaaaatgttacagcctaggatttaatctgtgaataattgatttaatcaattttaatgttaatacaatgataaagaatatttagattacttgatttcacttttgaattgttgaagctataaatttactttaaaagttcaattgaccagtatttgccggtattgccacttgagtcttatttgccatcggtacatacggtaaaaccggcggtaaatacctaggggctggaatttaccgcccaaccctg
gi|4 : agggttggcaaaatgccggcaggatgcctaagtccatgcagggcaaatccgtattaccgtaattccggcaaatactggtcaattaatgaactcaacacactggaattatattattaaggtcttggagtcttctaacctatactggccactaaattattgctaagagaagttactatttatgaatagatatagtttttaagcttttttcacactaaaattatttacacaatttcagggtgtttgtaattgtggctggcacacaccaagagaaacgtaagtagcggattcaacttccaggccctgttgggtggagggatatgagatgatgggtttcgagcatcgggatcttgaagaagtacattggcgcCAAAATGCAG-GCATTTATCC-ATATTGTTCCA-TGCCAGT-GGCAA--TAC-CGGT---ATT-AC-GGTAA-TTC-C--A-GTAAA--GC-CGG-CAAA-TT-CT-G-GTTCA-AC---TG--AA-TTAACCACATGGGAA-T-TTTAGTATATTT-AACTGTTCTTT------------TAG--AC-CA----TACACTG-GTCAAA-TAGATTTGTAT--T-CTTTAAAAG-ATTGAAGTTATTC--TAT-TTAATTCTAGAT---TATGGA-GT--TTGTAAGC-------TTT-TTTT-TCACAACTAT-AAT-T-A-ATTATATTACATA----C-AATTATATTTTAG--GGTG-TGTTTGTAAATTGTGAGCTGG-ACACT--TAATTAAAGTTTTGAAGAGCCTTAGTACTTTTACAGCTGTTGG---GGCAAGTC--AAGGCA-TGTTAGC-AGTGGTCT--TTCACATCTTTGTCAGAA-CAAAACACTTGA-AG--AATTCCAAA--T--GGATGTTTTGGGGGGAAGTTTTT--CA-GCTGAGA-TATGT--T-AGGTCAATACACAGTGA---AT-TGAGC-CAACCAATT-TGCTCT--GTACTG-C-TGGTAAAT-GAT--ATTGGA-GGG-TTGAAG-CA-T-ACCATAGC-TCATGTCA-ACTTGA-CACCCACTCTTTT--C-CTTCAAC-TC--CT--ATTTT--GGGAG-TGGAAAGC-AGAA-A-A-TT-ATATTGT--------GA--TTTTTA--ATTGCT-TG-GAT-----CTCTG-TT-TATGTCTGTTCCTAAC---C---AC-CTTGAA-T---TG-ACCA--GTGTTCTTG--AAAC--------TTGGTTGTGTTTA----A-CGACA------TTTAAAT-----ACATAATATAGGTG------G-TCTTCTTAAATCT-TGACCAGG-TCAG--A-A-CC--ATGGCACA-GGTA-GAAT--TAT-ACCAGTGATGTTATG-TTTAC--C-TGT-TTATT-AA-TTGTTTA----TTA-TTTTTTTGTAAATCTATAATTTGTTGTG-TAGAGG--Tg
gi|5 : GGTTGGCAAAATGCCG-GCATTTATCC-ATATT-TTCCA-TGCCAGT-GGCAA-ATAC-CGGT---ATTTACCGGTAAAT---------------GC-CGG-CAAA-TA-CT-G-GT-CA-AT---TG--AA-TCAACCACAATGGAA-T-TT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAA---C-TA----CAC--TG-GTCAA--TACATTT-TAT--T-CTT---AAG-ATTGAAGTTATTCC-TAT-TTA-TACTGAAT---TATG-A-GT--TT-TCAGG-------TTT-TTTT-TCACA-CTTT-AAT-TCA-ATTTA-TTACAT-----C-A-TTAT-TTTTAGTGAGT-----TTGTAAATTGTTG-CTGG-ACACTTCTAAATAAAGTTTTAAGCAG-CTTAGCAC-TT-ACAACTGTT-T---G-C-AGTC--AAG-CA-TGTT-GC-AGTGGTCC--TTCAC-TCTTTGTC--AA-C--AACAC-TGA-AGA-AATTCCAA---T-GGGATGTTT-----GGA-----TTT-CATGCTGA-A-TATGC-GT-AGGTCAATA-ACA-TGATT-AT--GA-C-CAA--AATT-TG-TCT--T-ACTG-C-T-GTAAAT-G-T--ATTGGA-GGG-TTGAAGCCA-T-ACCATAGC-TCATGTCATACTTGA-CACCC-CTCTTTTTCC-TTTCAAC-TTC-CT--ATTTT--GGG-G-TGGAA--C-AG-A-ATA-TC-AT-TTGT--------GA--TATTTT--ATTGCT-TT-GAT-----CTCTG-TT-TATGTCTGT--CTAAC---tagaaggagcttgtctcgaattttgtaaactgt
gi|6 : GGTTGGCAAAATGCCT-GCATTTATCG-ATATT-TTCCA-TGACAGT-GGCAA-ATACATGGTTATGTTTACCG-TAAATTCAC--A-GTAAA--ATGCGG-CAAA-TA-CT-G-GT-CA-AT---TGGAAA-TCAACCACA-TGGAA-TATT--ATATATTT-AACTGTTCTTTG-GTTAG--TTTTAACTATATA----TAC--TGCGTCAAACTAGATTTATAT--TGCTT---CAG-ATTGAAGTTATTCC-TATGTTA--ACTGAAT---TATG-A-GTATTT-TAAGC---C--TTTT-TTTTATCACA-CTTT-AATATTA-ATTCA-TTACACA----CCAATTAAATTTTAG---GTG-T-TTTGTAA-TTGTTGGCTGG-ACACTTCTAAATAAAATTTT-AAGAGTTTTAGCAC-TT-ACAACTGTT-T---GGC-AGTC--GAGGCA-TGTT-GC-AGTGGTCT--TTCAC-TCTTTGTC--AA-C--AACAC-TGA-AGA-AATTCCAAA--T-GGGATGTTT-----GGAT----TT--CATGCTGA-A-TATGT-GT-AGGTTAATA-ACAGTGATT-
gi|7 : ACTTGA-TACCC-ATCTATTTACGTTTCA-C-TTGGCTTAGTTTT--GGG-GGTAGAAA-C-AG-GGA-A-GT-AT-T-ATT-------GAATTTATTT--GTTAAT-TGTAATTCATACCCTACTT-TATGTCTGTA-CTAACGAGC---ACGCCTGAA-TGCTTG-A-CATAGTTTTCTTGTAAGACCTATGCGTTT-GT--GGTTTGTAAAG-CC--AAACAACTTTATGAT---ACCAAA-------TG------GGTCTTCTTA--GCTACGGCCATG-T--GGGC-AACC--AT-GCAC--TGTAAAAGT--TAT-ACCAGTGGAG-GCTGTTTGAC--C-TG--TTATTAAATTTGTTTC----AT--TTTTTTTTT-TATCTTAA--TTAATGTATTGGAGGTTTAA-ATT-AA--AGCATTCAACT---GTT--AAATGGTTTCAAC-CTAAGA-TTTAATCCTG-TGCTAAT-----T--TGATT--TAA-TCAATTT-T---ATGT---A--TACAAAGT-A-AT-AAGAAT-T-ATTTTAGATTTT-AC--CCGACT-----CTTTCG-ATTTG
gi|8 : G-TATGTTT-AC--C-TGTAG-ATTAAT-TTGTTCG----TAA-TTTTTTTGT-AATCTTTTATTTGT-GTA--GGAGG--TTATAGT-GA--AATATTCAACT---GTTAAAAGT--TTTCAGCGCTAGGA-TTTAA-CCTGTTG--GATAA---T--TTATT--TAA-TCAATTTCTAAGATGT-TAAATCACAA--TCG-ATATATAGTGT-CTTTTAGA-TTTCACTTTTGATTT--TACTTT---GATTGTTG-A-GC-T--ATA-A--TTTA-CTTA-ACAGTTTCAA-TTTAC--GTA----------T-------TTG-C-ACTTGAG-TCTTATTTT-GCACAG---------TACCGGTAAT--GCCGGT-GT-AA-TA-C-AGGG-G-T--GGAAT-a
gi|9 : A-AGT-CA--AATATTCAACTACTGTTAAAAAT-GTTTCAGC-CTAGGA-TTTA-TCCTG-TG--AATCA---TGTTGATT--TAAATCACATT-TA--ATGT-TAA--TACAA--T-G-ATAAAGAAT-T-ATTTTAGA-TT--AT-CTTGATTTA-CACTTTTGCAATTGTTGAA-GC-TCTATA-AATTTTA-CTTT-AAAG-TTCAATTTGA-CAGTAA---------T-------TTGCCAACTTGAGTTCTTA-TTT-G--CAGTCCGGTAAATA-CGGTAAAT-TCCGGCGGT-AA-AACC-AGGGCG-TGGGGAATCTTACCGCCCAACCCT