lowQualScore : 1111111111 2222222222222 111111 55555555555555555555555555555555 222222 777777777777777777777 111 111 2222222 55555555555 1 111111 1111 111 1 22222222222 333333 11 1 8888888888888888888888 22 2222 77777777777777 1111 222222 1 333333 555555555 3333333333 1 999999999 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777 44444444444 2222222222 333333333333 1
lowQualScore : 555 444 1 5 5 2 2222222222 555 555 555 0000000000000 3 111111 55555555555555555555555555555555 000000 2 888 999999999999999999999 5 5 888 5 44 6 3 666 444 1111111 555 00000000000 7 2 4 0 999999 5555 222 2 6 11111111111 1 222222 3 3 11 3 3 7777777777777777777777 2 44 2 55 3 1111 0 44444444444444 5555 666666 7 0 6 444444 6 000000000 5555555555 1 4 888888888 4 6 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 6 55555555555 6 6 1 5555555555 6 0 0 999999999999 6 666 88 8888 0 2 2 66666 4 4 5
lowQualScore : ... ... . . . . .......... ... ... ... ............. . ...... ................................ ...... . ... ..................... . . ... . .. . . ... ... ....... ... ........... . . . . ...... .... ... . . ........... . ...... . . .. . . ...................... . .. . .. . .... . .............. .... ...... . . . ...... . ......... .......... . . ......... . . . . ..................................................................................... . . ........... . . . .......... . . . ............ . ... .. .... . . . ..... . . .
lowQualScore : 444 777 8 6 5 7 0000000000 444 444 666 0000000000000 1 555555 77777777777777777777777777777777 444444 0 888 333333333333333333333 4 0 333 0 77 7 0 666 222 8888888 222 55555555555 5 7 8 7 222222 2222 000 7 7 44444444444 0 333333 0 8 22 2 2 8888888888888888888888 0 44 0 22 5 2222 8 00000000000000 5555 222222 0 6 0 666666 7 000000000 3333333333 4 4 999999999 2 0 1 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 7 00000000000 7 7 0 9999999999 0 8 9 666666666666 9 444 33 4444 6 2 7 77777 0 8 0
consensus : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTA-CCTCGCAC---------TAAC---CCTTG---ACATCAG--TC---ANCA-TT-AA-AACATGGGCTC------GAG---------AC--GATT-G-TTTTG-CGNC-CTGTAN--CGGAGACCCAATCA---G---A-----A--CGGCNTTT-ATAATCGGCC--GAA-AACGAAANTAA-ACACGCATGGC-G-CGGCGTCGGNAACATAGTGTAGAATTTGTGGCCAGTTACCACTAGACCGATACC------GTAGATTGATTTGCG-AAAATTCATTTTCTTTGAGGGAACA---ATGTTAAACGAAGTTT---NAGAATACGAGCCGCATGAAAACGACGNATTGTCCAGGTATGTTGT-NN--ATTATGTTTCAACAAATTGAACACGNTATTCAAAATTGACTATGAACTA---TAAATNATAAGCTATAACAATTAAAGGACG--AAAA-TGTGAATTA-----N-T-AATTACA-GTACGTTNCAAATAAAAA-TAGCACGCA-----ATGTTCATGATGTTGAGAAAAGGA---------CCC-ACG-TAAG---AC-ATTTTTGTACTTTCCGTTT-A-TGCTCT--TACCAAATTTTCATCTGAAAC-AAGAA-TCTCATTGGCTGATTT-AA-----------TT-T-AGCGTATTACGTCATN---------CTCCGTCTCGAGCCCATG-TT-C-GAATGGCG---ACTGATGTCAAGG---GTTAGTGCGAGG-TAACGAA-----TCAATAACCCTTGAC
Reference ( gi|1 ) : TCTTCACAAG---TCA---AGGGTTATTAATCCGTTA-CCTCGCAC---------TAAC---CCTTG---ACATCAA--TC---AGCA-TT-GA-AACATGGGCTC------GAG---------AT--AATT-G-TTTTG-TGCC-CTGTAG--TGAAGACCCAATCA---G---A-----T--CTGCATCT-ATAGTCGGCC--GAA-AACGAAAATAA-ATACAAGTGGT-G-CAGCGTCAGAAACATGATGTTAAATGTATTACCAGTTATCACAAGGCCAACACC------GTAGATTAATTTACA-AAAATTAATTTTCTATGAGAGAACA---ATATCAAGCAAAGTTT---AATAATACGAGCTGCATGAAAACAACGGATTGCCCAGGTAAATTGT-GT--ATTGTGTTTTAACAAACTGATCACATTATCTAAAATTGTTTATGTACTATT-TAAATCATCAGTTATCGCATTTAAAGAACT--AATA-TGTGAATTA-----A-T-AATTACATGTACGTTTCAAATGAAAA-TAACACATACTATGATGTTCGTGATATTGAGAAAAAGA---------CTC-ACG-CAAG---AT-ACTTTTGTACTATCCAATT-G-TGCTCT--TACTAAAATATAATCTGAATCAAAAAAGTCTCATTGGCTGATTT-AA-----------TT-T-AGCGTATTGCGTCATC---------CCCCGTCTCGAGAGCATA-TT-C-GAACGGTG---ACTGATGTTAAGG---GTTAGTGCAAGG-TAACGAA-----TTAATAACTTTTTAC
gi|2 : TCTTCACAAG---TT-----------------CGTTA-TCCTGAAC---------TGAC---CCTTG---ACATCAG--TT---AACA-T-------CATTGGT-------------------------ATT-G-CT-----GCT--TGCA----------CCAATCA---G---A-----AAACGGCTTTT-ATAGTCGGTC--TAATAACGAAACTAA-ACACGCATGGC-G-CGGTGTCGGTGACATGGTGTAGAATTTATGGCCAGCTACTACTAGACCGATACC------GTAGAATAATTTACG-AAAATTCAATTTCTTTAAG-GAAAA---A-GTTGA-CGAAGTTT---TAGAGTACAAGCCGCATAAAAACGACGGATTGTCCACATATGTTGT-TG--ATTATGTTTCAACTAATTGAACACGTTATCT-ATATTGACTATGAAC-----TAAATAATAAGCTATAACAATTAACGGACG--GAAA-TGTGAGTTACTGTTATT-AATTACA-GTACATTACAAATAAAAA-TAACACGCA-----ATGTTCATGATGTTGAGAAAAGGAAACCATTTTTTT-AC--CA----------TTTTGTATTTTTCGTTT-A-TGTTCT--TACC--ATTTTCATCTGAAACCATGAA-TCTCACTGGCTGATTTAAA-----------TT-T-AGCGTACTACGTCATA---------CTCCGT-------------TT-T-GAATGCCG---ACTGCTGAAAAAG---GTTATTGCGAGG-TAACGAA-----TCAAAAACTCTT
gi|9 : TCTTCACAAG---TCATTGAGA-----TGATTCGTTA-CCTCGCAC---------TAAC---CCTTG---ACACCAA--T------------AA-AACATGGGCTCTTAATGGAGCAT------AT--GATC-GGTTTTG-CTCC-CTGTAC--CGGAGATCCAATCA---G---A-----AAACAG-ATTTCATATTCGGCT--AAA-AGCGAGACTAA-ACACAAAAGGC-T-TAACGTCGACAAGATAATGTAGAATTTGTGGCCAGTAACCATTAGACCGATACC------GTAGACTGAATTGCA-AAAATTAATTTCCTTTAAAAAAA
gi|7 : tcaTCTTCACAAG---TCA---AGGGTTATTGATTCGCTA-CCTCGCAC---------TAAT---CCTTG---ACATCAG--TC---ACCA-TTCAA-AACATGGGCTC------GAG---------AT--GGAG-G-TTTGC-TG-C-TTGTAC--CGGAGACCCAATTA---G---A------------AT----TAATCGGCCATAAA-AACGAAgc
gi|3 : TCTTCACAAG---TCA---AGGGTTGTTGATTCGTT--------------------------CCTTG---ACAGCAG--TC---ACCA-TT-CAGAACATGGACTC------GAG---------ACGGAACT------TG-TGAT-TGGTAT--TGCTTGCCCAATGA---G---AAAACGC--CT---TTT-AAAATCGGCC--GAA-AATGAAGCTAA-ACACGCATGATCA-TAGCG--------A-GGTGTAGAACTTGTGACTAGTTACCACTAAATTAACATC------GTAGATTGATTCGCG-GAAA----------ATAAAGGTACA---ATG--AGACAAAGTTT---CAGAATACGAGCCGCGTG--AATAA-GTAT------GG----TTGT-CG--ATTATGTTTCTACAAATTGAACACAATATTCAAAATTG-------ACTATCATAAGTC--TAG-----GCAAATAAAGGGCCAAAAAA-AGTCAATTA-----T-T-AATTACG-ATA-----CAAATCAAAA-TAGCA--------G------GCAATGTTGAGAAAAAGggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|4 : caTCATCACAAG---TCA---AGAGTGATTGATTGGTT--------------------------CCTTG---ACATCAA--CC---ACCA-TTCAA-AACATGAGTTC------GAGACGGAGCATAT--GATTGG-TTTTGCTG-C-CTATAC--CGGAGACCCAATTA---GAAAA-----T---GGCTTTT-AAAAACGGTC--GAA-AAT----ATGGCATA----TGGT-GTCGGC--TATATACATAGAATT---TGTAGT--CTGCTACTACTAGATCGATACC------GTAGATTGATTTGCGCAAAATCAG-TTTCTTTGAAAGAAAG---ATTTGA--CGAAGTTTTTCACT--TACGAACTGCATG--AGCAA-GTAT------GG----TTGTCAT---TTATGTTTCTACAAACTGAAGACGGTATTCAAAATTG
gi|12 : gcaTTTTCACAAC---TCA---AGGGTTATTAATTCGTTA-CTTTGCAT---------TATC---CCTTG---TCATCAG--TC---ACCA-TTCAA-AACATGTGCTT------AAGACTGAGCATAT--GATTGG-TGTTG-CAAT-ATGTAGCTTGGAG--CCAATCATACG---A--------CAGCTTTC-ATAATCGAAC--GAA-AAGGAa
gi|22 : aCTTCACAAG---TCA---AGGGTTATTGATTCGTTA-CCTTGCA
gi|16 : TTCACAAGACGTCA---AGGATTATTGATTCGTTA-CCTCACAT---------TAAC---CTTTG---ACATC-G--T------CA-TT-------ATGGGCTC------GAG---------AT--GATT-G-GTTTT-CGGC-CTGTAG--CGGAAACCCAATCA---G---A-----
gi|20 : AAG---TCA---AGGTTTATTGATTCGTTA-CCTCGCAC---------T
gi|6 : tcaagggttattgattcgttacctcgcacAG---TCA---GGAGTTCTTGATTCGGTA-CCTTGCTT---------TAATTATCCTTG---CCATCAG--TC---ATTAGTC-AA-AACATGGGTTT------GGG---------AC--A
gi|8 : attaaacaagttattgaaaattacattgaaatagtaaatgaaatagactaagttacaacataacacggaatggaaatgtgaattattatttacattacatatcaaatcaacacacaatgttcatgatgttgagaaaaataccccatgtcaagaccatgtttttaccttctgtttttgctcgggtaccaaactaggaatcccattggtggatttatttttagcttattacgtcatcttcAG---TCA---AGAGTT-TTGATC-GTTAACCTCGCAA---------TAAC---CTTTT---TCAGCAG--TC---GGCA-TT-CA-AAAACGG
gi|23 : ttgactatgaacttaaataataagctataacaattaacggacggaaatgtgagttactgttattaatcacagtacattacaaataaaaaataacacgcaatgttcatgatgttagaaaaggaaaccatttaccattttggtatttttcgttttatgttcttaccatttttcatctgaaccgtaatctcactggtgatttaaatttagcgtactacgtcatactAG---TCA---AGGGTTATTGATTCGTTA-CCTCGTAC---------
gi|20 : ---TCA---AGGGTTATTGATTCGTTA-CCTCGCACAGTGCGAGGTAAC-------G---A-ATCAA--TA---AACC-TT-GA-a
gi|2 : A---AGAGTTTTTGATTCGTTA-CCTCGCAA---------TAAC---CTTTT---TCAGCAG--TC---GGCA-TT-CA-AActt
gi|5 : tcttcacaagttcgttatcctgaactgacccttgacatcagttaacatcattggtattgctgcttgcaccaatcagaaaacggcttttatagtcggtctaataacgaaactaaacacgcatggcgcggtgtcggtgacatggtgtagaatttatggccagctactactagaccgataccgtagaataatttacgaaaattcaatttctttaaggaaaaagttgacgaagttttagagtacaagccgcataaaaacgacggattgtccacatatgttgttgattatgtttcaactaattgaacacgttatctatattgactatgaactaaataataagctataacaattaacggacggaaatgtgagttactgttattaattacagtacattacaaataaaaataacacgcaatgttcatgatgttgagaaaaggaaaccatttttttaccattttgtatttttcgtttatgttcttaccattttcatctgaaaccatgaatctcactggctgatttaaatttagcgtactacgtcatactccgt---AGGGTTATTGATTCGTTA-CCTTGCAC---------TAAC---CATTG---ACATCAG--TC---GCCATTT-GA-AATCTGAGCTT------GAG---------AC--AA
gi|14 : aatatttcaacaatttgaacattgaatatgaactaaatcataagctgtgacaattataggacaaaatatgaatcataaatttcattacaaataaaagtagtacgcaatgttcaggatgttcaaaggaactcgtgtaaggccatgctgtactctccgtttaatgttcttaccaaactttaatctgtaacaaggaatatcattggctgatttaaattttacatttttgtagcatattgcggcattct---CCTTGGAAACATCAAGATCGATAG-A-CT-AA-AGGATAGGCTC------GAGG--------AT--GATT-G-GTTTT-TGCGACAGAAG--CGGAGACCCAATCA---GAA-A-----A--CCGCACCT-A-AACCGGCC--AAA-AACGAAAA-AA-Acaa
gi|13 : -AATGAAAACAA-ACACACGTGGT-G-CGGCATCAGAAACATACTGTT------------AGTTACCTCAAATCCAACACCATTATGATACATTAATTTGAA-AATATTCATTTCCTTTGAGGGAACA---ATATCAAACGAAGTTT---TAGAATA
gi|10 : TTGCCAGTTAGCACTAGGCCAGTACC------GTAGATTAATGT--G-AAAATTCATTTTCTTTGAGGGAACAATTATATTAAACGAATTTT---TAGAATACGGGCCGC-TGAATACGACGAA
gi|18 : cactcatggcgcggcgtcggcatcatgtgtaattaatttttttttttttttAGAAATGTTT---AG-AATGCGAACCGCACGAAAACGATGGACTGTCCAAGTATGTT-T-GTCCATTGTGTTTTAACAAcgtcc
gi|5 : cTATTTCAACAATTTGA--ACATTG-----AAT-----ATGAACTA-----AATCATAAGCTGTGACAATTATAGGACA--AA-A-TATGAATCA-----T-A-AATTTCAT-TAC-----AAATAAAAG-TAGTACGCA-----ATGTTCAGGATGTTCAAAGGAA-----------CTC-GTG-TAAGGCCAT-GCT---GTACTCTCCGTTT-AATGTTCT--TACCAAACTTTAATCTGTAACAAGGAA-TATCATTGGCTGATTT-AAATTTTACATTTTTGT-AGCATATTGCGGCATT---------CTTTGTCTCAAGCTCAGA-TTTC-AAATGGCG---ACTGATGTCAATG---GTTAGTGCAAGG-TAACGAA-----TCAATAAC
gi|8 : aaTTGACTATGAACT----TAAATAATAAGCTATAACAATTAACGGACG--GAAA-TGTGAGTTACTGTTA-TTAATCACA-GTACATTACAAATAAAAAATAACACGCA-----ATGTTCATGATGTT-AGAAAAGGAAACCA----TTT-AC----------C-ATTTTGGTATTTTTCGTTTTA-TGTTCT--TACCATTTT-TCATCTGAACCGTAA---TCTCACTGG-TGATTT-AAA----------TT-T-AGCGTACTACGTCATA---------CTCCGTT------------TT-T-GAATGCCG---ACTGCTGAAAAAG---GTTATTGCGAGGTTAACG-A-----TCAA-AACTCTTGACcctcaa
gi|11 : AAAGGACA--AAAACTCTGAATTA-----C-T-AATTAC------GTTCCAATTAGAAA-TAACATACA-----ATGTTCATGATGTTGAGAAAAAGAT--------CCC-GCG-TAAA---AC--CATGTGT----TC--ATT---TTCTGT--TACCAAATTTGCATCTGAAAC-GAGGATTCTCATTGGCTGATTC-AAT----------TT-T-AGCGTt
gi|6 : A-TGTGAATTA-----T-T-ATTTACAT-TACATATCAAAT------CAACACACA-----ATGTTCATGATGTTGAGAAAAATA---------CCCCATGTCAAG---ACCATGTTTTTACCTTCTGTTT-T-TGCTCGGGTACCAAA-------CT-------AGGAATCCCATTGGTGGATTT-AT-----------TT-TTAGCTTATTACGTCATC---------TTCTGTCCCAAACCCATGTTT-T-GACTAATG---ACTGATGGCAAGGATAATTAAAGCAAGG-TACCGAA-----TCAAGAACTCCTGAC
gi|21 : attaaacaagttattgaaaattacattgaaatagtaaatgaaatagactaagttacaacataacacggaatggaaGTACGTTTCAAATAACAA-TAACAAGCA-----ATGTTCATGATGTTGA-AAAAGGA---------ACC-ACG-t
gi|19 : AAATAAAAA-TAGCACGCA-----GTGTTCATTATGTTGAGAAAAGGA---------CCC-ACG-TAAG---A
gi|15 : aattaaattatcaaAAA-TAGCACGCA-----ATGTTAATGATGTTGTTACAGGAA---------CCC-ACG-TATG---AT-ATTTTTTTACTTTCCGTTT-G-TTCTCT--TACCAAACTTGCATCTGAAAC-AAGAAGTCTCATTGcc
gi|12 : ATTGGCT---CC-AA-----------GC-T-A-CATATTGCAACACCAATCATATGCTCAGTCTTAAGCACATG-TT-TTGAATGGTG---ACTGATGACAAGG---GATAATGCAAAG-TAACGAA-----TTAATAACCCTT
gi|4 : attttcacaactcATG---------CTCCGTCTCGAACTCATGTTT-T-GAATGGTG---GTTGATGTCAAGG-----------------AACCAA-----TCAATCACTCTTGACcatacgacagctttcataatcgaacgaaaagga
gi|7 : gcatcatcacaaC---------CTCCATCTCGAGCCCATG-TT-TTGAATGGTG---ACTGATGTCAAGG---ATTAGTGCGAGG-TAGCGAA-----TCAATAACCCTTGACatgattggttttgctgcctataccggagacccaattagaaaatggcttttaaaaacggtcgaaaatatggcatatggtgtcggctatatacatagaatttgtagtctgctactactagatcgataccgtagattgatttgcgcaaaatcagtttctttgaaagaaagatttgacgaagtttttcacttacgaactgcatgagcaagtatggttgtcatttatgtttctacaaactgaagacggtattcaaaattga
gi|3 : tcttcacaaCCGTCTCGAGTCCATG-TT-CTGAATGGTG---ACTGCTGTCAAGG-----------------AACGAA-----TCAACAACCCTTGACtttgctgcttgtaccggagacccaattagaattaatcggccataaaaacgaaggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|16 : catcttcacaaCATCTCGAGCCCATA-----------ATG---AC-GATGTCAAAG---GTTAATGTGAGG-TAACGAA-----TCAATAATCCTTGACaacttgtgattggtattgcttgcccaatgagaaaacgccttttaaaatcggccgaaaatgaagctaaacacgcatgatcatagcgaggtgtagaacttgtgactagttaccactaaattaacatcgtagattgattcgcggaaaataaaggtacaatgagacaaagtttcagaatacgagccgcgtgaataagtatggttgtcgattatgtttctacaaattgaacacaatattcaaaattgactatcataagtctaggcaaataaagggccaaaaaaagtcaattattaattacgatacaaatcaaaatagcaggcaatgttgagaaaaag
gi|2 : ttcacaagacAGCA-A-TA-C-CAATGATGTTAACTGATGTCAAGG---GTCAGTTCAGGA-TAACGAA-----CTattggttttcggcctgtagcggaaacccaatcaga
gi|9 : tcttcaca---ATTGGTGTCAAGG---GTTAGTGCGAGG-TAACGAATCATCTCAATGACTTgcttgcaccaatcagaaaacggcttttatagtcggtctaataacgaaactaaacacgcatggcgcggtgtcggtgacatggtgtagaatttatggccagctactactagaccgataccgtagaataatttacgaaaattcaatttctttaaggaaaaagttgacgaagttttagagtacaagccgcataaaaacgacggattgtccacatatgttgttgattatgtttcaactaattgaacacgttatctatattgactatgaactaaataataagctataacaattaacggacggaaatgtgagttactgttattaattacagtacattacaaataaaaataacacgcaatgttcatgatgttgagaaaaggaaaccatttttttaccattttgtatttttcgtttatgttcttaccattttcatctgaaaccatgaatctcactggctgatttaaatttagcgtactacgtcatactccgttttgaatgccgactgctgaaaaaggttattgcgaggtaacgaatcaaaaactctt
gi|20 : tcatcttcacAGTGCGAGG-TAACGAA-----TCAATAAaaaacatgggctcttaatggagcatatgatcggttttgctccctgtaccggagatccaatcagaaaacagatttcatattcggctaaaagcgagactaaacacaaaaggcttaacgtcgacaagataatgtagaatttgtggccagtaaccattagaccgataccgtagactgaattgcaaaaattaatttcctttaaaaaaagc
gi|20 : tcaagggttattgattcgttacctcgcacGTGCGAGG-TAACGAA-----TCAATAACCCTTaccttgactt
gi|23 : tcGTACGAGG-TAACGAA-----TCAATAACCCTTGACagtgcgaggtaacgaatcaataaaccttgactt
gi|22 : aTGCAAGG-TAACGAA-----TCAATAACCCTTGACa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TATTAATTACGATACAAATACAAAGTGCACGCAATGTTCACAATGTTGAGAAAAGGACTCCACCTTATTTATGATCT
Alignments
lowQualScore : 111111 111111 5555555555555555555555555555555 2222222 11 333333333333 111111 111 22222 22222222222 111 2222 222222222 111 111 333333 1111111 1111 1 11 444444444444444 66666666666666 111 1
lowQualScore : 555 555 0 777 66 555 999999 222222 6666666666666666666666666666666 33 0 7777 0 66 8888888 2 3 66 4 66 44 5 77 66 11 1 77 1 000000000000 66 444444 00 6 2 1 0 000 44444 66 5 5 1 5 1 44444444444 1 4 777 22 555 3 1 0000 111111111 3 1 3 000 333 5 222222 1 0000000 4 4 99999 1 7 999 8888 5 3333 3 0 77 88 0 77 5 1 333 1 555 1 99 1 444444444444444 6 1 88888888888888 3 0 99 1 444 3 8 0 0 2
lowQualScore : ... ... . ... .. ... ...... ...... ............................... .. . .... . .. ....... . . .. . .. .. . .. .. .. . .. . ............ .. ...... .. . . . . ... ..... .. . . . . . ........... . . ... .. ... . . .... ......... . . . ... ... . ...... . ....... . . ..... . . ... .... . .... . . .. .. . .. . . ... . ... . .. . ............... . . .............. . . .. . ... . . . . .
lowQualScore : 888 888 2 888 11 000 111111 888888 7777777777777777777777777777777 99 9 8888 8 11 4444444 8 6 99 4 66 77 7 99 99 00 7 99 7 111111111111 99 444444 55 5 5 7 7 000 00000 99 0 0 0 0 7 22222222222 5 6 222 00 333 2 0 7777 888888888 7 5 5 000 111 7 999999 0 2222222 1 0 11111 4 3 555 5555 0 6666 9 7 44 11 4 99 0 1 777 6 999 4 33 0 777777777777777 7 0 44444444444444 2 6 44 4 000 2 0 8 8 8
consensus : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTG---ACATCAG--TCACCA--TTCAAAACATGGGCTC------GAG---AC---------G---------ATT-G--TTTTGCGGCCTGTANC--GGAGACCCAATCAG--A--AAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGG-CGC--GGCGTCGGCAACATAGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACG--AAG-T-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTAT-G-TTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAGC-CATG--TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
Reference ( family-509 ) : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTG---ACATCAG--TCANCA--TT-AAAACATGGGCTC------GAG---AC---------G---------ATT-G--TTTTGCGNCCTGTANC--GGAGACCCAATCAG--A--A--CGGCNTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGG-CGC--GGCGTCGGNAACATAGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATGTTAAACG--AAG-T-TTNAGAA-TACGAGCCGCATGAAAACGACGNATTGTCCAGGTAT-G-TTGTNNATTATGTTTCAACAAATTGAACACGNTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GAAAA-TGTGA------ATTANTAATTACA-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAATTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAGCCCATG--TTCGAATGGCGACTGATGTCAAGG---GTTAGTGCGAGG-TAACGAATCAATAACCCTTGAC
gi|1 : TCTTCACAAG---TCA---AGGGTTATTAATCCGTTACCTCGCACTAACCCTTG---ACATCAA--TCAGCA--TT-GAAACATGGGCTC------GAG---AT---------A---------ATT-G--TTTTGTGCCCTGTAGT--GAAGACCCAATCAG--A--T--CTGCATCTATAGTCGGCC--GAA-AACGAAAATAAATACAAGTGG-TGC--AGCGTCAGAAACATGATGTTA--AATGTATT-----------ACCAGTTATCAC--AAGGCCAACACCGT------AGATTAATTTACAAAAATTAATTTTCTATGAGAGAACA---ATATCAAGCA--AAG-T-TTAATAA-TACGAGCTGCATGAAAACAACGGATTGCCCAGGTAA-A-TTGTGTATTGTGTTTTAACAAACTGATCACATTATCTAAAATTGTTTATGTACTATTTAAATCA-------TCAGTTATCGCATTTAA---AGAAC--TAATA-TGTGA------ATTAATAATTACATGTACGTTTCAAAT-GAAAATAACACATACTATGATGTTCGTGATATTGAGAAAAAG-A-C-TCA----CGC-AAGA-TACTTTTGTACTATCCA-ATTG-TGCTC--TTACTAAAATATAATCTGAATCAA-A-AAAGTCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTGCGTCATCCCCCGTCTCGAGAGCATA--TTCGAACGGTGACTGATGTTAAGG---GTTAGTGCAAGG-TAACGAATTAATAACTTTTTAC
gi|10 : CACTCATGG-CGC--GGCGTCGGCATCAT-GTGTAATTAATTTTTTTTTTTTTTTTTGCCAGTTAGCAC--TAGGCCAGTACCGT------AGATTAAT--GTGAAAATTCATTTTCTTTGAGGGAACAATTATATTAAACG--AAT-T-TTTAGAA-TACGGGCCGC-TGAATACGACGAA-CGTCC
gi|11 : AA---AGGAC--AAAAACTCTGA------ATTACTAATTAC------GTTCCAATT-AGAAATAACATACA-----ATGTTCATGATGTTGAGAAAAAG-ATC-CCG----CGT-AAAACCATGTGTTCATTTTCTG-------------TTACCAAATTTGCATCTGAAACGA-G-GAT-TCTCATTGGCTGATTC-A-AT----------TT-TAGCGT
gi|12 : TTTTCACAAC---TCA---AGGGTTATTAATTCGTTACTTTGCATTATCCCTTG---TCATCAG--TCACCA--TTCAAAACATGTGCTT------AAG---ACTGAGCATATG---------ATTGG--TGTTGCAATATGTAGCTTGGAG--CCAATCAT--ACGA--CAGCTTTCATAATCGAAC--GAA-AAGGA
gi|13 : a-AATGAAAACAAACACACGTGG-TGC--GGCATCAGAAACATACTGT-------------------------TAGTTACCTC--AAATCCAACACCATTATGATACATTAATTTGAAAATATTCATTTCCTTTGAGGGAACA---ATATCAAACG--AAG-T-TTTAGAA-TA
gi|14 : CCTTGGAAACATCAAGATCGATAGACT-AAAGGATAGGCTC------GAGG--AT---------G---------ATT-GGTTTTTGCGACA-GAAGC--GGAGACCCAATCAGAAA--A--CCGCACCTA-AACCGGCC--AAA-AACGAAAA-AAA
gi|15 : AAATAGCACGCA-----ATGTTAATGATGTTGTTACAGGA-A-C-CCA----CGT-ATGA-TATTTTTTTACTTTCCG-TTTG-TTCTC--TTACCAAACTTGCATCTGAAACAA-G-AAG-TCTCATTG
gi|16 : TTCACAAGACGTCA---AGGATTATTGATTCGTTACCTCACATTAACCTTTG---ACATC-G--T---CA--TT------ATGGGCTC------GAG---AT---------G---------ATT-G--GTTTTCGGCCTGTAGC--GGAAACCCAATCAG--A--
gi|17 : TATTAATTACG-ATAC-----AAAT-ACAAAGTGCACGCA-----ATGTTCACAATGTTGAGAAAAGG-A-CTCCA----C
gi|18 : G--AAA-TGTTTAGAA-TGCGAACCGCACGAAAACGATGGACTGTCCAAGTAT-GTTTGTCCATTGTGTTTTAACAActtatttatgatct
gi|19 : caAAAT-AAAAATAGCACGCA-----GTGTTCATTATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-C
gi|2 : aattaaattatcaaTCTTCACAAG---T-----------------TCGTTATCCTGAACTGACCCTTG---ACATCAG--TTAACA--T------CATTGG-------------------------------------------TATTGCTGCTTGCA----------CCAATCAG--A--AAACGGCTTTTATAGTCGGTC--TAATAACGAAACTAAACACGCATGG-CGC--GGTGTCGGTGACATGGTGTAG--AATTTATG-----------GCCAGCTACTAC--TAGACCGATACCGT------AGAATAATTTACGAAAATTCAATTTCTTTAAGGAAA-A---A-GTT-GACG--AAG-T-TTTAGAG-TACAAGCCGCATAAAAACGACGGATTGTCCACATAT-G-TTGTTGATTATGTTTCAACTAATTGAACACGTTA-TCTATATTGACTATGAAC----TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATTACA-GTACATTACAAAT-AAAAATAACACGCA-----ATGTTCATGATGTTGAGAAAAGGAA-A-CCATTTTTTT-A--C-CA-TTTTGTATTTTTCG-TTTA-TGTTC--TTACC--ATTTTCATCTGAAACCATG-AA--TCTCACTGGCTGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCGT--------------TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGG-TAACGAATCAAAAACTCTTc
gi|20 : ---TCA---AGGGTTATTGATTCGTTACCTCGCAC
gi|20 : AAG---TCA---AGGTTTATTGATTCGTTACCTCGCACTagtgcgaggtaacgaatcaataaaccttgactt
gi|21 : tcaagggttattgattcgttacctcgcac-GTACGTTTCAAAT-AACAATAACAAGCA-----ATGTTCATGATGTTGA-AAAAGG-A-A-CCA----CG
gi|22 : CTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTTGCA
gi|23 : AG---TCA---AGGGTTATTGATTCGTTACCTCGTAC
gi|3 : TCTTCACAAG---TCA---AGGGTTGTTGATTCGTT-------------CCTTG---ACAGCAG--TCACCA--TTCAGAACATGGACTC------GAG---AC---------G---------G---A--ACTTGTGATTGGTATT--GCTTGCCCAATGAG--A--AAACGCCTTTTAAAATCGGCC--GAA-AATGAAGCTAAACACGCATGATCAT--AGCG--AG-------GTGTAG--AACTTGTG-----------ACTAGTTACCAC--TAAATTAACATCGT------AGATTGATTCGCGGAAA---AT-------AAAGGTACA---ATG--AGACA--AAG-T-TTCAGAA-TACGAGCCGCGTGAA--------------TAAGTAT-GGTTGTCGATTATGTTTCTACAAATTGAACACAATATTCAAAATTGACTAT----CA--TAAGTC--------TAGG------CAAATAA---AGGGCCAAAAAA-AGTCA------ATTATTAATTACG-ATA-----CAAAT-CAAAATAGCAGGCA--------------ATGTTGAGAAAAAG-a
gi|4 : caTCATCACAAG---TCA---AGAGTGATTGATTGGTT-------------CCTTG---ACATCAA--CCACCA--TTCAAAACATGAGTTC------GAG---AC---------GGAGCATATGATT-GG-TTTTGCTGCCTATACC--GGAGACCCAATTAG--A--AAATGGCTTTTAAAAACGGTC--GAA-AAT--------------ATGG-CATATGGTGTCGGCTATATA-CATAG--AATTTGTA-----------GTCTGCTACTAC--TAGATCGATACCGT------AGATTGATTTGCGCAAAATCAGTTTCTTTGAAAGAAAG---AT-TT-GACG--AAG-T-TTTTCACTTACGAACTGCATGAG--------------CAAGTATGG-TTGTCATTTATGTTTCTACAAACTGAAGACGGTATTCAAAATTGA
gi|5 : gcaATATTTCAACAATTTGAACA------------TTGAATATGAACTA----AATCA-------TAAGCTGTGACAATTAT---AGGAC---AAAA-TATGA------ATCATAAATTTCA------TTACAAAT-AAAAGTAGTACGCA-----ATGTTCAGGATGTTCA--AAGGA-A-C-TCG----TGT-AAGG-CCATGCTGTACTCTCCG-TTTAATGTTC--TTACCAAACTTTAATCTGTAACAA-GGAA--TATCATTGGCTGATTT-A-AATTTTACATTTTTGTAGCATATTGCGGCATTCTTTGTCTCAAGCTCA-GATTTCAAATGGCGACTGATGTCAATG---GTTAGTGCAAGG-TAACGAATCAATAACCCT
gi|6 : aATTAAACAAGTTATTGAAAATT-ACATTGAAATAG-TAAATGAAATAGACTAAGTTACAACA--TAACACGGAAT--GGAAA-TGTGA------ATTATTATTTACA-TTACATATCAAAT-CAA-----CACACA-----ATGTTCATGATGTTGAGAAAAAT-ACC-CCA----TGTCAAGACCATGTTTTTACCTTCTG-TTTT-TGCTCGGGTACCAAACT------------AG-G-AA--TCCCATTGGTGGATTT-ATT-----------TT-TAGCTTATTACGTCATCTTCTGTCCCAAACCCATGT-TTTGACTAATGACTGATGGCAAGGATAATTAAAGCAAGG-TACCGAATCAAGAACTCCTGACcaa
gi|7 : TCTTCACAAG---TCA---AGGGTTATTGATTCGCTACCTCGCACTAATCCTTG---ACATCAG--TCACCA--TTCAAAACATGGGCTC------GAG---ATG--------G---------A---G--GTTTGCTGCTTGTACC--GGAGACCCAATTAG--A--A--T--------TAATCGGCCATAAA-AACGAAt
gi|7 : TTACCACGATAGATCGATACAGT------AGATTGA------AAAA-TAATTTTCTTTGAAGG-ACA---AT------CGATAAGTT-TTTAGAA-TATGAGCggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|8 : tcttcacaagtcaagggttattgattcgctacctcgcactaatccttgacatcagtcaccattcaaaacatgggctcgagatggaggtttgctgcttgtaccggagacccaattagaattaatcggccataaaaacgaaggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcataTTGACTATGAACT---TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATCACA-GTACATTACAAATAAAAAATAACACGCA-----ATGTTCATGATGTT-AGAAAAGGAA-A-CCA----TTT-A--C-CATTTTGGTATTTTTCGTTTTA-TGTTC--TTACC-ATTTTTCATCTGAACC---GTAA--TCTCACTGG-TGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCGTT-------------TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGGTTAACG-ATCAA-AACTCTTGACaatggat
gi|9 : TCTTCACAAG---TCATTGAGA-----TGATTCGTTACCTCGCACTAACCCTTG---ACACCAA--T----------AAAACATGGGCTCTTAATGGAGCATAT---------G---------ATC-GG-TTTTGCTCCCTGTACC--GGAGATCCAATCAG--A--AAACAGATTTCATATTCGGCT--AAA-AGCGAGACTAAACACAAAAGG-CTT--AACGTCGACAAGATAATGTAG--AATTTGTG-----------GCCAGTAACCAT--TAGACCGATACCGT------AGACTGAATTGCAAAAATTAATTTCCTTTAAt
Alignments
lowQualScore : 111111 5555555555555555555555555555555555 333333333333 111111 111111111 11111111111 111 2222 222222222 111 1111 333333 111 1111 1 11 444444444444444 8888888888888888 111
lowQualScore : 555 555 0 5 88 222222 4444444444444444444444444444444444 4 77 1 7777 0 5 3 3 66 4 66 44 9999 3 99 1 77 1 000000000000 66 444444 00 6 2 1 0 333333333 5 5 1 99999999999 1 777 3 555 3 1 0000 111111111 3 1 3 000 2222 5 222222 000 8 4 4 99999 1 7 999 8888 5 3333 3 0 77 88 0 77 5 0 333 1 555 1 99 1 444444444444444 6 1 2222222222222222 1 0 22 1 444 1 8 0 8
lowQualScore : ... ... . . .. ...... .................................. . .. . .... . . . . .. . .. .. .... . .. . .. . ............ .. ...... .. . . . . ......... . . . ........... . ... . ... . . .... ......... . . . ... .... . ...... ... . . . ..... . . ... .... . .... . . .. .. . .. . . ... . ... . .. . ............... . . ................ . . .. . ... . . . .
lowQualScore : 888 888 2 6 99 888888 6666666666666666666666666666666666 4 66 9 8888 8 1 4 6 99 4 66 77 0000 0 77 7 99 7 111111111111 99 444444 55 5 5 7 7 444444444 0 0 7 55555555555 5 222 2 333 2 0 7777 888888888 7 5 5 000 3333 7 999999 222 2 1 0 11111 4 3 555 5555 0 6666 9 7 44 11 4 99 0 4 777 6 999 4 33 0 777777777777777 7 0 6666666666666666 0 6 00 4 000 0 0 8 8
consensus : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--TT-TTGCNGCCTGTANC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGG-TTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAG-CC---AT--TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
Reference ( family-509 ) : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--TT-TTGCGGCCTGTANC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCAACATAGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTAT-G-TTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAG-CC---ATG-TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
gi|1 : TCTTCACAAG---TCA---AGGGTTATTAATCCGTTACCTCGCACTAACCCTTGACATCAATCAGCATT-GAAACATGGGCTC------GAG---AT---------A---------A---TT-G--TT-TTGTGCCCTGTAGT--GAAGACCCAATCAGAT--CTGCATCTATAGTCGGCC--GAA-AACGAAAATAAATACAAGTGGTGC--AGCGTCAGAAACATGATGTTA--AATGTATT-----------ACCAGTTATCAC--AAGGCCAACACCGT------AGATTAATTTACAAAAATTAATTTTCTATGAGAGAACA---ATATCAAGCAAAGT-TTAATAA-TACGAGCTGCATGAAAACAACGGATTGCCCAGGTAA-A-TTGTGTATTGTGTTTTAACAAACTGATCACATTATCTAAAATTGTTTATGTACTATTTAAATCA-------TCAGTTATCGCATTTAA---AGAAC--TAATA-TGTGA------ATTAATAATTACATGTACGTTTCAAAT-GAAAATAACACATACTATGATGTTCGTGATATTGAGAAAAAG-A-C-TCA----CGC-AAGA-TACTTTTGTACTATCCA-ATTG-TGCTC--TTACTAAAATATAATCTGAATCAA-A-AAAGTCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTGCGTCATCCCCCGTCTCGAGAGC---ATA-TTCGAACGGTGACTGATGTTAAGG---GTTAGTGCAAGG-TAACGAATTAATAACTTTTTAC
gi|10 : CACTCATGGCGC--GGCGTCGGCATCAT-GTGTAATTAATTTTTTTTTTTTTTTTTGCCAGTTAGCAC--TAGGCCAGTACCGT------AGATTAAT--GTGAAAATTCATTTTCTTTGAGGGAACAATTATATTAAACGAATT-TTTAGAA-TACGGGCCGC-TGAATACGACGAA-CGTCC
gi|11 : AA---AGGAC--AAAAACTCTGA------ATTACTAATTACG------TTCCAATT-AGAAATAACATACA-----ATGTTCATGATGTTGAGAAAAAG-ATC-CCG----CGT-AAAACCATGTGTTCATTTTCTG-------------TTACCAAATTTGCATCTGAAACGA-G-GAT-TCTCATTGGCTGATTC-A-AT----------TT-TAGCGT
gi|12 : TTTTCACAAC---TCA---AGGGTTATTAATTCGTTACTTTGCATTATCCCTTGTCATCAGTCACCATTCAAAACATGTGCTT------AAG---ACTGAGCATATG---------A---TTGG--TG-TTGCAATATGTAGCTTGGAG--CCAATCATACGACAGCTTTCATAATCGAAC--GAA-AAGGA
gi|13 : a-AATGAAAACAAACACACGTGGTGC--GGCATCAGAAACATACTGT-------------------------TAGTTACCTC--AAATCCAACACCATTATGATACATTAATTTGAAAATATTCATTTCCTTTGAGGGAACA---ATATCAAACGAAGT-TTTAGAA-TA
gi|14 : AAAGGATAGGCTC------GAGG--AT---------G---------A---TT-GGTTT-TTGCGACA-GAAGC--GGAGACCCAATCAGAAAACCGCACCTA-AACCGGCC--AAA-AACGAAAA-AAA
gi|15 : ccttggaaacatcaagatcgatagactAAATAGCACGCA-----ATGTTAATGATGTTGTTACAGGA-A-C-CCA----CGT-ATGA-TATTTTTTTACTTTCCG-TTTG-TTCTC--TTACCAAACTTGCATCTGAAACAA-G-AAG-TCTCATTG
gi|16 : TTCACAAGACGTCA---AGGATTATTGATTCGTTACCTCACATTAACCTTTGACATC-GTCA---TT------ATGGGCTC------GAG---AT---------G---------A---TT-G--GT-TTTCGGCCTGTAGC--GGAAACCCAATCAGA
gi|17 : TATTAATTACG-ATAC-----AAAT-ACAAAGTGCACGCA-----ATGTTCACAATGTTGAGAAAAGG-A-CTCCA----C
gi|18 : GAAATGTTTAGAA-TGCGAACCGCACGAAAACGATGGACTGTCCAAGTAT-GTTTGTCCATTGTGTTTTAACAActtatttatgatct
gi|19 : caAAAT-AAAAATAGCACGCA-----GTGTTCATTATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-C
gi|2 : aattaaattatcaaTCTTCACAAG---T-----------------TCGTTATCCTGAACTGACCCTTGACATCAGTTAACAT------CATTGG----------------------------------------------TA-TTGCTGCTTGCA----------CCAATCAGAAAACGGCTTTTATAGTCGGTC--TAATAACGAAACTAAACACGCATGGCGC--GGTGTCGGTGACATGGTGTAG--AATTTATG-----------GCCAGCTACTAC--TAGACCGATACCGT------AGAATAATTTACGAAAATTCAATTTCTTTAAGGAAA-A---A-GTT-GACGAAGT-TTTAGAG-TACAAGCCGCATAAAAACGACGGATTGTCCACATAT-G-TTGTTGATTATGTTTCAACTAATTGAACACGTTA-TCTATATTGACTATGAAC----TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATTACA-GTACATTACAAAT-AAAAATAACACGCA-----ATGTTCATGATGTTGAGAAAAGGAA-A-CCATTTTTTT-A--C-CA-TTTTGTATTTTTCG-TTTA-TGTTC--TTACC--ATTTTCATCTGAAACCATG-AA--TCTCACTGGCTGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCGT----------------TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGG-TAACGAATCAAAAACTCTTc
gi|20 : ---TCA---AGGGTTATTGATTCGTTACCTCGCAC
gi|20 : AAG---TCA---AGGTTTATTGATTCGTTACCTCGCACTagtgcgaggtaacgaatcaataaaccttgactt
gi|21 : tcaagggttattgattcgttacctcgcac-GTACGTTTCAAAT-AACAATAACAAGCA-----ATGTTCATGATGTTGA-AAAAGG-A-A-CCA----CG
gi|22 : CTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTTGCA
gi|23 : AG---TCA---AGGGTTATTGATTCGTTACCTCGTAC
gi|3 : TCTTCACAAG---TCA---AGGGTTGTTGATTCGTT-------------CCTTGACAGCAGTCACCATTCAGAACATGGACTC------GAG---AC---------G---------GAACTT-G--TGATTG------GTATT--GCTTGCCCAATGAGAAAACGCCTTTTAAAATCGGCC--GAA-AATGAAGCTAAACACGCATGAT------CAT-AGCGA---GGTGTAG--AACTTGTG-----------ACTAGTTACCAC--TAAATTAACATCGT------AGATTGATTCGCGGAAA---AT-------AAAGGTACA---ATG--AGACAAAGT-TTCAGAA-TACGAGCCGCGTGAA--------------TAAGTATGG-TTGTCGATTATGTTTCTACAAATTGAACACAATATTCAAAATTGACTAT----CA--TAAGTC--------TAGG------CAAATAA---AGGGCCAAAAAA-AGTCA------ATTATTAATTACG-ATA-----CAAAT-CAAAATAGCAGGCA--------------ATGTTGAGAAAAAG-a
gi|4 : caTCATCACAAG---TCA---AGAGTGATTGATTGGTT-------------CCTTGACATCAACCACCATTCAAAACATGAGTTC------GAG---AC---------GGAGCATATGA---TT-GG-TT-TTGCTGCCTATACC--GGAGACCCAATTAGAAAATGGCTTTTAAAAACGGTC--GAA-AAT--------------ATGGCATATGGTGTCGGCTATATA-CATAG--AATTTGTA-----------GTCTGCTACTAC--TAGATCGATACCGT------AGATTGATTTGCGCAAAATCAGTTTCTTTGAAAGA--A---AGATTTGACGAAGT-TTTTCACTTACGAACTGCATGAG--------------CAAGTATGG-TTGTCATTTATGTTTCTACAAACTGAAGACGGTATTCAAAATTGA
gi|5 : gcaATATTTCAACAATTTGAACA------------TTGAATATGAACTA----AATCA-------TAAGCTGTGACAATTAT---AGGAC--A-AAA-TATGA------ATCATAAATT-----T-CATTACAAAT-AAAAGTAGTACGCA-----ATGTTCAGGATGTTCA--AAGGA-A-C-TCG----TGT-AAGG-CCATGCTGTACTCTCCG-TTTAATGTTC--TTACCAAACTTTAATCTGTAACAA-GGAA--TATCATTGGCTGATTT-A-AATTTTACATTTTTGTAGCATATTGCGGCATTCTTTGTCTCAAG-CTCAGAT--TTCAAATGGCGACTGATGTCAATG---GTTAGTGCAAGG-TAACGAATCAATAACCCT
gi|6 : aATTAAACAAGTTATTGAAAATT-ACATTGAAATAG-TAAATGAAATAGACTAAGTTACAACA--TAACACGGAAT--GGAAA-TGTGA------ATTATTATTTACA-TTACATATCAAAT-CAA-----CACACA-----ATGTTCATGATGTTGAGAAAAAT-ACC-CCA----TGTCAAGACCATGTTTTTACCTTCTG-TTTT-TGCTCGGGTACCAAACT------------AG-G-AA--TCCCATTGGTGGATTT-ATT-----------TT-TAGCTTATTACGTCATCTTCTGTCCCAAACCC---ATGTTTTGACTAATGACTGATGGCAAGGATAATTAAAGCAAGG-TACCGAATCAAGAACTCCTGACcaa
gi|7 : TCTTCACAAG---TCA---AGGGTTATTGATTCGCTACCTCGCACTAATCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---ATG--------G---------A------G--GT-TTGCTGCTTGTACC--GGAGACCCAATTAGAA------T----TAATCGGCCATAAA-AACGAAt
gi|7 : TTACCACGATAGATCGATACAGT------AGATTGA------AAAA-TAATTTTCTTTGAAGG-ACA---A---TCGATAAGTT-TTTAGAA-TATGAGCggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|8 : tcttcacaagtcaagggttattgattcgctacctcgcactaatccttgacatcagtcaccattcaaaacatgggctcgagatggaggtttgctgcttgtaccggagacccaattagaattaatcggccataaaaacgaaggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcataTTGACTATGAACT---TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATCACA-GTACATTACAAATAAAAAATAACACGCA-----ATGTTCATGATGTT-AGAAAAGGAA-A-CCA----TTT-A--C-CATTTTGGTATTTTTCGTTTTA-TGTTC--TTACC-ATTTTTCATCTGAACC---GTAA--TCTCACTGG-TGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCGTT---------------TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGGTTAACG-ATCAA-AACTCTTGACaatggat
gi|9 : TCTTCACAAG---TCATTGAGA-----TGATTCGTTACCTCGCACTAACCCTTGACACCAAT--------AAAACATGGGCTCTTAATGGAGCATAT---------G---------A---TC-GG-TT-TTGCTCCCTGTACC--GGAGATCCAATCAGAAAACAGATTTCATATTCGGCT--AAA-AGCGAGACTAAACACAAAAGGCTT--AACGTCGACAAGATAATGTAG--AATTTGTG-----------GCCAGTAACCAT--TAGACCGATACCGT------AGACTGAATTGCAAAAATTAATTTCCTTTAAt
Alignments
lowQualScore : 111111 5555555555555555555555555555555555555 1111 1 333333333333 111111 111111111 11111111111 2222 222222222 111 1111 333333 111 1111 1 11 444444444444444 66666666666666 111
lowQualScore : 555 555 0 5 88 222222 7777777777777777777777777777777777777 66 1 0 1 0000 1 5 3 3 66 4 66 44 9999 2 3 2 1 77 1 000000000000 66 444444 00 6 2 1 0 333333333 5 5 1 99999999999 1 44 3 555 3 1 0000 111111111 3 1 3 000 2222 5 222222 000 8 4 4 99999 1 7 999 8888 5 3333 3 0 77 88 0 77 5 0 333 1 555 1 99 1 444444444444444 6 1 77777777777777 8 1 0 22 1 444 1 8 0 8
lowQualScore : ... ... . . .. ...... ..................................... .. . . . .... . . . . .. . .. .. .... . . . . .. . ............ .. ...... .. . . . . ......... . . . ........... . .. . ... . . .... ......... . . . ... .... . ...... ... . . . ..... . . ... .... . .... . . .. .. . .. . . ... . ... . .. . ............... . . .............. . . . .. . ... . . . .
lowQualScore : 888 888 2 6 99 888888 0000000000000000000000000000000000000 11 0 9 0 3333 8 1 4 6 99 4 66 77 0000 7 0 4 7 99 7 111111111111 99 444444 55 5 5 7 7 444444444 0 0 7 55555555555 5 00 2 333 2 0 7777 888888888 7 5 5 000 3333 7 999999 222 2 1 0 11111 4 3 555 5555 0 6666 9 7 44 11 4 99 0 4 777 6 999 4 33 0 777777777777777 7 0 44444444444444 0 0 6 00 4 000 0 0 8 8
consensus : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCCTGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAG-CCCA-AT-TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
Reference ( family-509 ) : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCNGCCTGTANC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAG-CC---AT-TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
gi|1 : TCTTCACAAG---TCA---AGGGTTATTAATCCGTTACCTCGCACTAACCCTTGACATCAATCAGCATT-GAAACATGGGCTC------GAG---AT---------A---------A---TT-G--T--TT--TGTGCCCTGTAGT--GAAGACCCAATCAGAT--CTGCATCTATAGTCGGCC--GAA-AACGAAAATAAATACAAGTGGTGC--AGCGTCAGAAACATGATGTTA--AATGTATT-----------ACCAGTTATCAC--AAGGCCAACACCGT------AGATTAATTTACAAAAATTAATTTTCTATGAGAGAACA---ATATCAAGCAAAGT-TTAATAA-TACGAGCTGCATGAAAACAACGGATTGCCCAGGTA-AATTGTGTATTGTGTTTTAACAAACTGATCACATTATCTAAAATTGTTTATGTACTATTTAAATCA-------TCAGTTATCGCATTTAA---AGAAC--TAATA-TGTGA------ATTAATAATTACATGTACGTTTCAAAT-GAAAATAACACATACTATGATGTTCGTGATATTGAGAAAAAG-A-C-TCA----CGC-AAGA-TACTTTTGTACTATCCA-ATTG-TGCTC--TTACTAAAATATAATCTGAATCAA-A-AAAGTCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTGCGTCATCCCCCGTCTCGAGAGC---ATATTCGAACGGTGACTGATGTTAAGG---GTTAGTGCAAGG-TAACGAATTAATAACTTTTTAC
gi|10 : CACTCATGGCGC--GGCGTCGGCATCATG-TGTAATTAATTTTTTTTTTTTTTTTTGCCAGTTAGCAC--TAGGCCAGTACCGT------AGATTAAT--GTGAAAATTCATTTTCTTTGAGGGAACAATTATATTAAACGAATT-TTTAGAA-TACGGGCCGC-TGAATACGACGAA-CGTCC
gi|11 : AA---AGGAC--AAAAACTCTGA------ATTACTAATTACG------TTCCAATT-AGAAATAACATACA-----ATGTTCATGATGTTGAGAAAAAG-ATC-CCG----CGT-AAAACCATGTGTTCATTTTCTG-------------TTACCAAATTTGCATCTGAAACGA-G-GAT-TCTCATTGGCTGATTC-A-AT----------TT-TAGCGT
gi|12 : TTTTCACAAC---TCA---AGGGTTATTAATTCGTTACTTTGCATTATCCCTTGTCATCAGTCACCATTCAAAACATGTGCTT------AAG---ACTGAGCATATG---------A---TTGG--T--GT--TGCAATATGTAGCTTGGAG--CCAATCATACGACAGCTTTCATAATCGAAC--GAA-AAGGA
gi|13 : a-AATGAAAACAAACACACGTGGTGC--GGCATCAGAAACATACTGT-------------------------TAGTTACCTC--AAATCCAACACCATTATGATACATTAATTTGAAAATATTCATTTCCTTTGAGGGAACA---ATATCAAACGAAGT-TTTAGAA-TA
gi|14 : AAAGGATAGGCTC------GAGG--AT---------G---------A---TT-GGTT--TT--TGCGACA-GAAGC--GGAGACCCAATCAGAAAACCGCACCTA-AACCGGCC--AAA-AACGAAAA-AAA
gi|15 : ccttggaaacatcaagatcgatagactAAATAGCACGCA-----ATGTTAATGATGTTGTTACAGGA-A-C-CCA----CGT-ATGA-TATTTTTTTACTTTCCG-TTTG-TTCTC--TTACCAAACTTGCATCTGAAACAA-G-AAG-TCTCATTG
gi|16 : TTCACAAGACGTCA---AGGATTATTGATTCGTTACCTCACATTAACCTTTGACATC-GTCA---TT------ATGGGCTC------GAG---AT---------G---------A---TT-G--G--TT--TTCGGCCTGTAGC--GGAAACCCAATCAGA
gi|17 : TATTAATTACG-ATAC-----AAAT-ACAAAGTGCACGCA-----ATGTTCACAATGTTGAGAAAAGG-A-CTCCA----C
gi|18 : GAAATGTTTAGAA-TGCGAACCGCACGAAAACGATGGACTGTCCAAGTATGTTTGTCCATTGTGTTTTAACAActtatttatgatct
gi|19 : caAAAT-AAAAATAGCACGCA-----GTGTTCATTATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-C
gi|2 : aattaaattatcaaTCTTCACAAG---T-----------------TCGTTATCCTGAACTGACCCTTGACATCAGTTAACAT------CATTGG----------------------------------------------T--AT--TGCTGCTTGCA----------CCAATCAGAAAACGGCTTTTATAGTCGGTC--TAATAACGAAACTAAACACGCATGGCGC--GGTGTCGGTGACATGGTGTAG--AATTTATG-----------GCCAGCTACTAC--TAGACCGATACCGT------AGAATAATTTACGAAAATTCAATTTCTTTAAGGAAA-A---A-GTT-GACGAAGT-TTTAGAG-TACAAGCCGCATAAAAACGACGGATTGTCCACATAT-GTTGTTGATTATGTTTCAACTAATTGAACACGTTA-TCTATATTGACTATGAAC----TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATTACA-GTACATTACAAAT-AAAAATAACACGCA-----ATGTTCATGATGTTGAGAAAAGGAA-A-CCATTTTTTT-A--C-CA-TTTTGTATTTTTCG-TTTA-TGTTC--TTACC--ATTTTCATCTGAAACCATG-AA--TCTCACTGGCTGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCG--------------T-TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGG-TAACGAATCAAAAACTCTTc
gi|20 : ---TCA---AGGGTTATTGATTCGTTACCTCGCAC
gi|20 : AAG---TCA---AGGTTTATTGATTCGTTACCTCGCACTagtgcgaggtaacgaatcaataaaccttgactt
gi|21 : tcaagggttattgattcgttacctcgcac-GTACGTTTCAAAT-AACAATAACAAGCA-----ATGTTCATGATGTTGA-AAAAGG-A-A-CCA----CG
gi|22 : CTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTTGCA
gi|23 : AG---TCA---AGGGTTATTGATTCGTTACCTCGTAC
gi|3 : TCTTCACAAG---TCA---AGGGTTGTTGATTCGTT-------------CCTTGACAGCAGTCACCATTCAGAACATGGACTC------GAG---AC---------G---------GAACTT-G--TGATTGGTATTGCTTG-----------CCCAATGAGAAAACGCCTTTTAAAATCGGCC--GAA-AATGAAGCTAAACACGCATGAT------CAT-AGCGA---GGTGTAG--AACTTGTG-----------ACTAGTTACCAC--TAAATTAACATCGT------AGATTGATTCGCGGAAA---AT-------AAAGGTACA---ATG--AGACAAAGT-TTCAGAA-TACGAGCCGCGTGAA--------------TAAGTATGGTTGTCGATTATGTTTCTACAAATTGAACACAATATTCAAAATTGACTAT----CA--TAAGTC--------TAGG------CAAATAA---AGGGCCAAAAAA-AGTCA------ATTATTAATTACG-ATA-----CAAAT-CAAAATAGCAGGCA--------------ATGTTGAGAAAAAG-a
gi|4 : caTCATCACAAG---TCA---AGAGTGATTGATTGGTT-------------CCTTGACATCAACCACCATTCAAAACATGAGTTC------GAG---AC---------GGAGCATATGA---TT-GG-T--TT--TGCTGCCTATACC--GGAGACCCAATTAGAAAATGGCTTTTAAAAACGGTC--GAA-AAT--------------ATGGCATATGGTGTCGGCTATATA-CATAG--AATTTGTA-----------GTCTGCTACTAC--TAGATCGATACCGT------AGATTGATTTGCGCAAAATCAGTTTCTTTGAAAGA--A---AGATTTGACGAAGT-TTTTCACTTACGAACTGCATGAG--------------CAAGTATGGTTGTCATTTATGTTTCTACAAACTGAAGACGGTATTCAAAATTGA
gi|5 : gcaATATTTCAACAATTTGAACA------------TTGAATATGAACTA----AATCA-------TAAGCTGTGACAATTAT---AGGAC--A-AAA-TATGA------ATCATAAATT-----T-CATTACAAAT-AAAAGTAGTACGCA-----ATGTTCAGGATGTTCA--AAGGA-A-C-TCG----TGT-AAGG-CCATGCTGTACTCTCCG-TTTAATGTTC--TTACCAAACTTTAATCTGTAACAA-GGAA--TATCATTGGCTGATTT-A-AATTTTACATTTTTGTAGCATATTGCGGCATTCTTTGTCTCAAG-CTCAGAT-TTCAAATGGCGACTGATGTCAATG---GTTAGTGCAAGG-TAACGAATCAATAACCCT
gi|6 : aATTAAACAAGTTATTGAAAATT-ACATTGAAATAG-TAAATGAAATAGACTAAGTTACAACA--TAACACGGAAT--GGAAA-TGTGA------ATTATTATTTACA-TTACATATCAAAT-CAA-----CACACA-----ATGTTCATGATGTTGAGAAAAAT-ACC-CCA----TGTCAAGACCATGTTTTTACCTTCTG-TTTT-TGCTCGGGTACCAAACT------------AG-G-AA--TCCCATTGGTGGATTT-ATT-----------TT-TAGCTTATTACGTCATCTTCTGTCCCAAA-CCCATGT-TTTGACTAATGACTGATGGCAAGGATAATTAAAGCAAGG-TACCGAATCAAGAACTCCTGACcaa
gi|7 : TCTTCACAAG---TCA---AGGGTTATTGATTCGCTACCTCGCACTAATCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---ATG--------G---------A------G--G--TT--TGCTGCTTGTACC--GGAGACCCAATTAGAA------T----TAATCGGCCATAAA-AACGAAt
gi|7 : TTACCACGATAGATCGATACAGT------AGATTGA------AAAA-TAATTTTCTTTGAAGG-ACA---A---TCGATAAGTT-TTTAGAA-TATGAGCggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|8 : tcttcacaagtcaagggttattgattcgctacctcgcactaatccttgacatcagtcaccattcaaaacatgggctcgagatggaggtttgctgcttgtaccggagacccaattagaattaatcggccataaaaacgaaggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcataTTGACTATGAACT---TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATCACA-GTACATTACAAATAAAAAATAACACGCA-----ATGTTCATGATGTT-AGAAAAGGAA-A-CCA----TTT-A--C-CATTTTGGTATTTTTCGTTTTA-TGTTC--TTACC-ATTTTTCATCTGAACC---GTAA--TCTCACTGG-TGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCGT-------------T-TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGGTTAACG-ATCAA-AACTCTTGACaatggat
gi|9 : TCTTCACAAG---TCATTGAGA-----TGATTCGTTACCTCGCACTAACCCTTGACACCAAT--------AAAACATGGGCTCTTAATGGAGCATAT---------G---------A---TC-GG-T--TT--TGCTCCCTGTACC--GGAGATCCAATCAGAAAACAGATTTCATATTCGGCT--AAA-AGCGAGACTAAACACAAAAGGCTT--AACGTCGACAAGATAATGTAG--AATTTGTG-----------GCCAGTAACCAT--TAGACCGATACCGT------AGACTGAATTGCAAAAATTAATTTCCTTTAAt
Alignments
lowQualScore : 111111 5555555555555555555555555555555555555 1111 1 333333333333 111111 111111111 11111111111 2222 222222222 111 1111 333333 111 1111 1 11 444444444444444 5555555555555 111
lowQualScore : 555 555 0 5 88 222222 7777777777777777777777777777777777777 66 2 4 1 0000 1 5 3 3 66 4 66 44 9999 2 3 2 1 77 1 000000000000 66 444444 00 6 2 1 0 333333333 5 5 1 99999999999 1 44 3 555 3 1 0000 111111111 3 1 3 000 2222 5 222222 000 8 4 4 99999 1 7 999 8888 5 3333 3 0 77 88 0 77 5 0 333 1 555 1 99 1 444444444444444 6 1 8888888888888 1 0 22 1 444 1 8 0 8
lowQualScore : ... ... . . .. ...... ..................................... .. . . . .... . . . . .. . .. .. .... . . . . .. . ............ .. ...... .. . . . . ......... . . . ........... . .. . ... . . .... ......... . . . ... .... . ...... ... . . . ..... . . ... .... . .... . . .. .. . .. . . ... . ... . .. . ............... . . ............. . . .. . ... . . . .
lowQualScore : 888 888 2 6 99 888888 0000000000000000000000000000000000000 11 0 4 0 1111 8 1 4 6 99 4 66 77 0000 7 0 4 7 99 7 111111111111 99 444444 55 5 5 7 7 444444444 0 0 7 55555555555 5 00 2 333 2 0 7777 888888888 7 5 5 000 3333 7 999999 222 2 1 0 11111 4 3 555 5555 0 6666 9 7 44 11 4 99 0 4 777 6 999 4 33 0 777777777777777 7 0 2222222222222 0 6 00 4 000 0 0 8 8
consensus : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAGC-CA--TTTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
Reference ( family-509 ) : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAGCCCA-ATTTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
gi|1 : TCTTCACAAG---TCA---AGGGTTATTAATCCGTTACCTCGCACTAACCCTTGACATCAATCAGCATT-GAAACATGGGCTC------GAG---AT---------A---------A---TT-G--T--TT--TG-TGCCCTGTAGT--GAAGACCCAATCAGAT--CTGCATCTATAGTCGGCC--GAA-AACGAAAATAAATACAAGTGGTGC--AGCGTCAGAAACATGATGTTA--AATGTATT-----------ACCAGTTATCAC--AAGGCCAACACCGT------AGATTAATTTACAAAAATTAATTTTCTATGAGAGAACA---ATATCAAGCAAAGT-TTAATAA-TACGAGCTGCATGAAAACAACGGATTGCCCAGGTA-AATTGTGTATTGTGTTTTAACAAACTGATCACATTATCTAAAATTGTTTATGTACTATTTAAATCA-------TCAGTTATCGCATTTAA---AGAAC--TAATA-TGTGA------ATTAATAATTACATGTACGTTTCAAAT-GAAAATAACACATACTATGATGTTCGTGATATTGAGAAAAAG-A-C-TCA----CGC-AAGA-TACTTTTGTACTATCCA-ATTG-TGCTC--TTACTAAAATATAATCTGAATCAA-A-AAAGTCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTGCGTCATCCCCCGTCTCGAGAGCA-TATTCGAACGGTGACTGATGTTAAGG---GTTAGTGCAAGG-TAACGAATTAATAACTTTTTAC
gi|10 : CACTCATGGCGC--GGCGTCGGCATCATG-TGTAATTAATTTTTTTTTTTTTTTTTGCCAGTTAGCAC--TAGGCCAGTACCGT------AGATTAAT--GTGAAAATTCATTTTCTTTGAGGGAACAATTATATTAAACGAATT-TTTAGAA-TACGGGCCGC-TGAATACGACGAA-CGTCC
gi|11 : AA---AGGAC--AAAAACTCTGA------ATTACTAATTACG------TTCCAATT-AGAAATAACATACA-----ATGTTCATGATGTTGAGAAAAAG-ATC-CCG----CGT-AAAACCATGTGTTCATTTTCTG-------------TTACCAAATTTGCATCTGAAACGA-G-GAT-TCTCATTGGCTGATTC-A-AT----------TT-TAGCGT
gi|12 : TTTTCACAAC---TCA---AGGGTTATTAATTCGTTACTTTGCATTATCCCTTGTCATCAGTCACCATTCAAAACATGTGCTT------AAG---ACTGAGCATATG---------A---TTGG--T--GT--TGCAATA-TGTAGCTTGGAG--CCAATCATACGACAGCTTTCATAATCGAAC--GAA-AAGGA
gi|13 : a-AATGAAAACAAACACACGTGGTGC--GGCATCAGAAACATACTGT-------------------------TAGTTACCTC--AAATCCAACACCATTATGATACATTAATTTGAAAATATTCATTTCCTTTGAGGGAACA---ATATCAAACGAAGT-TTTAGAA-TA
gi|14 : AAAGGATAGGCTC------GAGG--AT---------G---------A---TT-GGTT--TT--TGC-GAC-AGAAGC--GGAGACCCAATCAGAAAACCGCACCTA-AACCGGCC--AAA-AACGAAAA-AAA
gi|15 : ccttggaaacatcaagatcgatagactAAATAGCACGCA-----ATGTTAATGATGTTGTTACAGGA-A-C-CCA----CGT-ATGA-TATTTTTTTACTTTCCG-TTTG-TTCTC--TTACCAAACTTGCATCTGAAACAA-G-AAG-TCTCATTG
gi|16 : TTCACAAGACGTCA---AGGATTATTGATTCGTTACCTCACATTAACCTTTGACATC-GTCA---TT------ATGGGCTC------GAG---AT---------G---------A---TT-G--G--TT--TTCGGCC-TGTAGC--GGAAACCCAATCAGA
gi|17 : TATTAATTACG-ATAC-----AAAT-ACAAAGTGCACGCA-----ATGTTCACAATGTTGAGAAAAGG-A-CTCCA----C
gi|18 : GAAATGTTTAGAA-TGCGAACCGCACGAAAACGATGGACTGTCCAAGTATGTTTGTCCATTGTGTTTTAACAActtatttatgatct
gi|19 : caAAAT-AAAAATAGCACGCA-----GTGTTCATTATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-C
gi|2 : aattaaattatcaaTCTTCACAAG---T-----------------TCGTTATCCTGAACTGACCCTTGACATCAGTTAACAT------CATTGG----------------------------------------------T--AT--TGCTGCT-TGCA----------CCAATCAGAAAACGGCTTTTATAGTCGGTC--TAATAACGAAACTAAACACGCATGGCGC--GGTGTCGGTGACATGGTGTAG--AATTTATG-----------GCCAGCTACTAC--TAGACCGATACCGT------AGAATAATTTACGAAAATTCAATTTCTTTAAGGAAA-A---A-GTT-GACGAAGT-TTTAGAG-TACAAGCCGCATAAAAACGACGGATTGTCCACATAT-GTTGTTGATTATGTTTCAACTAATTGAACACGTTA-TCTATATTGACTATGAAC----TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATTACA-GTACATTACAAAT-AAAAATAACACGCA-----ATGTTCATGATGTTGAGAAAAGGAA-A-CCATTTTTTT-A--C-CA-TTTTGTATTTTTCG-TTTA-TGTTC--TTACC--ATTTTCATCTGAAACCATG-AA--TCTCACTGGCTGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCG-------------TTTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGG-TAACGAATCAAAAACTCTTc
gi|20 : ---TCA---AGGGTTATTGATTCGTTACCTCGCAC
gi|20 : AAG---TCA---AGGTTTATTGATTCGTTACCTCGCACTagtgcgaggtaacgaatcaataaaccttgactt
gi|21 : tcaagggttattgattcgttacctcgcac-GTACGTTTCAAAT-AACAATAACAAGCA-----ATGTTCATGATGTTGA-AAAAGG-A-A-CCA----CG
gi|22 : CTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTTGCA
gi|23 : AG---TCA---AGGGTTATTGATTCGTTACCTCGTAC
gi|3 : TCTTCACAAG---TCA---AGGGTTGTTGATTCGTT-------------CCTTGACAGCAGTCACCATTCAGAACATGGACTC------GAG---AC---------G---------GAACTT-G--TGATTGGTATTGCT-TG-----------CCCAATGAGAAAACGCCTTTTAAAATCGGCC--GAA-AATGAAGCTAAACACGCATGAT------CAT-AGCGA---GGTGTAG--AACTTGTG-----------ACTAGTTACCAC--TAAATTAACATCGT------AGATTGATTCGCGGAAA---AT-------AAAGGTACA---ATG--AGACAAAGT-TTCAGAA-TACGAGCCGCGTGAA--------------TAAGTATGGTTGTCGATTATGTTTCTACAAATTGAACACAATATTCAAAATTGACTAT----CA--TAAGTC--------TAGG------CAAATAA---AGGGCCAAAAAA-AGTCA------ATTATTAATTACG-ATA-----CAAAT-CAAAATAGCAGGCA--------------ATGTTGAGAAAAAG-a
gi|4 : caTCATCACAAG---TCA---AGAGTGATTGATTGGTT-------------CCTTGACATCAACCACCATTCAAAACATGAGTTC------GAG---AC---------GGAGCATATGA---TT-GG-T--TT--TGCTGCC-TATACC--GGAGACCCAATTAGAAAATGGCTTTTAAAAACGGTC--GAA-AAT--------------ATGGCATATGGTGTCGGCTATATA-CATAG--AATTTGTA-----------GTCTGCTACTAC--TAGATCGATACCGT------AGATTGATTTGCGCAAAATCAGTTTCTTTGAAAGA--A---AGATTTGACGAAGT-TTTTCACTTACGAACTGCATGAG--------------CAAGTATGGTTGTCATTTATGTTTCTACAAACTGAAGACGGTATTCAAAATTGA
gi|5 : gcaATATTTCAACAATTTGAACA------------TTGAATATGAACTA----AATCA-------TAAGCTGTGACAATTAT---AGGAC--A-AAA-TATGA------ATCATAAATT-----T-CATTACAAAT-AAAAGTAGTACGCA-----ATGTTCAGGATGTTCA--AAGGA-A-C-TCG----TGT-AAGG-CCATGCTGTACTCTCCG-TTTAATGTTC--TTACCAAACTTTAATCTGTAACAA-GGAA--TATCATTGGCTGATTT-A-AATTTTACATTTTTGTAGCATATTGCGGCATTCTTTGTCTCAAGCTCAGATTTCAAATGGCGACTGATGTCAATG---GTTAGTGCAAGG-TAACGAATCAATAACCCT
gi|6 : aATTAAACAAGTTATTGAAAATT-ACATTGAAATAG-TAAATGAAATAGACTAAGTTACAACA--TAACACGGAAT--GGAAA-TGTGA------ATTATTATTTACA-TTACATATCAAAT-CAA-----CACACA-----ATGTTCATGATGTTGAGAAAAAT-ACC-CCA----TGTCAAGACCATGTTTTTACCTTCTG-TTTT-TGCTCGGGTACCAAACT------------AG-G-AA--TCCCATTGGTGGATTT-ATT-----------TT-TAGCTTATTACGTCATCTTCTGTCCCAAACCCATGTTTTGACTAATGACTGATGGCAAGGATAATTAAAGCAAGG-TACCGAATCAAGAACTCCTGACcaa
gi|7 : TCTTCACAAG---TCA---AGGGTTATTGATTCGCTACCTCGCACTAATCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---ATG--------G---------A------G--G--TT--TGCTGCT-TGTACC--GGAGACCCAATTAGAA------T----TAATCGGCCATAAA-AACGAAt
gi|7 : TTACCACGATAGATCGATACAGT------AGATTGA------AAAA-TAATTTTCTTTGAAGG-ACA---A---TCGATAAGTT-TTTAGAA-TATGAGCggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|8 : tcttcacaagtcaagggttattgattcgctacctcgcactaatccttgacatcagtcaccattcaaaacatgggctcgagatggaggtttgctgcttgtaccggagacccaattagaattaatcggccataaaaacgaaggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcataTTGACTATGAACT---TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATCACA-GTACATTACAAATAAAAAATAACACGCA-----ATGTTCATGATGTT-AGAAAAGGAA-A-CCA----TTT-A--C-CATTTTGGTATTTTTCGTTTTA-TGTTC--TTACC-ATTTTTCATCTGAACC---GTAA--TCTCACTGG-TGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCGT------------TTTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGGTTAACG-ATCAA-AACTCTTGACaatggat
gi|9 : TCTTCACAAG---TCATTGAGA-----TGATTCGTTACCTCGCACTAACCCTTGACACCAAT--------AAAACATGGGCTCTTAATGGAGCATAT---------G---------A---TC-GG-T--TT--TGCTCCC-TGTACC--GGAGATCCAATCAGAAAACAGATTTCATATTCGGCT--AAA-AGCGAGACTAAACACAAAAGGCTT--AACGTCGACAAGATAATGTAG--AATTTGTG-----------GCCAGTAACCAT--TAGACCGATACCGT------AGACTGAATTGCAAAAATTAATTTCCTTTAAt
Alignments
lowQualScore : 111111 5555555555555555555555555555555555555 1111 1 333333333333 111111 111111111 11111111111 2222 222222222 111 1111 333333 111 1111 1 11 444444444444444 66666666666666 111
lowQualScore : 555 555 0 5 88 222222 7777777777777777777777777777777777777 66 2 4 1 0000 1 5 3 3 66 4 66 44 9999 2 3 2 1 77 1 000000000000 66 444444 00 6 2 1 0 333333333 5 5 1 99999999999 1 44 3 555 3 1 0000 111111111 3 1 3 000 2222 5 222222 000 8 4 4 99999 1 7 999 8888 5 3333 3 0 77 88 0 77 5 0 333 1 555 1 99 1 444444444444444 6 1 77777777777777 8 1 0 22 1 444 1 8 0 8
lowQualScore : ... ... . . .. ...... ..................................... .. . . . .... . . . . .. . .. .. .... . . . . .. . ............ .. ...... .. . . . . ......... . . . ........... . .. . ... . . .... ......... . . . ... .... . ...... ... . . . ..... . . ... .... . .... . . .. .. . .. . . ... . ... . .. . ............... . . .............. . . . .. . ... . . . .
lowQualScore : 888 888 2 6 99 888888 0000000000000000000000000000000000000 11 0 4 0 1111 8 1 4 6 99 4 66 77 0000 7 0 4 7 99 7 111111111111 99 444444 55 5 5 7 7 444444444 0 0 7 55555555555 5 00 2 333 2 0 7777 888888888 7 5 5 000 3333 7 999999 222 2 1 0 11111 4 3 555 5555 0 6666 9 7 44 11 4 99 0 4 777 6 999 4 33 0 777777777777777 7 0 44444444444444 0 0 6 00 4 000 0 0 8 8
consensus : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAG-CCCA-AT-TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
Reference ( family-509 ) : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAG-CC---AT-TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
gi|1 : TCTTCACAAG---TCA---AGGGTTATTAATCCGTTACCTCGCACTAACCCTTGACATCAATCAGCATT-GAAACATGGGCTC------GAG---AT---------A---------A---TT-G--T--TT--TG-TGCCCTGTAGT--GAAGACCCAATCAGAT--CTGCATCTATAGTCGGCC--GAA-AACGAAAATAAATACAAGTGGTGC--AGCGTCAGAAACATGATGTTA--AATGTATT-----------ACCAGTTATCAC--AAGGCCAACACCGT------AGATTAATTTACAAAAATTAATTTTCTATGAGAGAACA---ATATCAAGCAAAGT-TTAATAA-TACGAGCTGCATGAAAACAACGGATTGCCCAGGTA-AATTGTGTATTGTGTTTTAACAAACTGATCACATTATCTAAAATTGTTTATGTACTATTTAAATCA-------TCAGTTATCGCATTTAA---AGAAC--TAATA-TGTGA------ATTAATAATTACATGTACGTTTCAAAT-GAAAATAACACATACTATGATGTTCGTGATATTGAGAAAAAG-A-C-TCA----CGC-AAGA-TACTTTTGTACTATCCA-ATTG-TGCTC--TTACTAAAATATAATCTGAATCAA-A-AAAGTCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTGCGTCATCCCCCGTCTCGAGAGC---ATATTCGAACGGTGACTGATGTTAAGG---GTTAGTGCAAGG-TAACGAATTAATAACTTTTTAC
gi|10 : CACTCATGGCGC--GGCGTCGGCATCATG-TGTAATTAATTTTTTTTTTTTTTTTTGCCAGTTAGCAC--TAGGCCAGTACCGT------AGATTAAT--GTGAAAATTCATTTTCTTTGAGGGAACAATTATATTAAACGAATT-TTTAGAA-TACGGGCCGC-TGAATACGACGAA-CGTCC
gi|11 : AA---AGGAC--AAAAACTCTGA------ATTACTAATTACG------TTCCAATT-AGAAATAACATACA-----ATGTTCATGATGTTGAGAAAAAG-ATC-CCG----CGT-AAAACCATGTGTTCATTTTCTG-------------TTACCAAATTTGCATCTGAAACGA-G-GAT-TCTCATTGGCTGATTC-A-AT----------TT-TAGCGT
gi|12 : TTTTCACAAC---TCA---AGGGTTATTAATTCGTTACTTTGCATTATCCCTTGTCATCAGTCACCATTCAAAACATGTGCTT------AAG---ACTGAGCATATG---------A---TTGG--T--GT--TGCAATA-TGTAGCTTGGAG--CCAATCATACGACAGCTTTCATAATCGAAC--GAA-AAGGA
gi|13 : a-AATGAAAACAAACACACGTGGTGC--GGCATCAGAAACATACTGT-------------------------TAGTTACCTC--AAATCCAACACCATTATGATACATTAATTTGAAAATATTCATTTCCTTTGAGGGAACA---ATATCAAACGAAGT-TTTAGAA-TA
gi|14 : AAAGGATAGGCTC------GAGG--AT---------G---------A---TT-GGTT--TT--TGC-GAC-AGAAGC--GGAGACCCAATCAGAAAACCGCACCTA-AACCGGCC--AAA-AACGAAAA-AAA
gi|15 : ccttggaaacatcaagatcgatagactAAATAGCACGCA-----ATGTTAATGATGTTGTTACAGGA-A-C-CCA----CGT-ATGA-TATTTTTTTACTTTCCG-TTTG-TTCTC--TTACCAAACTTGCATCTGAAACAA-G-AAG-TCTCATTG
gi|16 : TTCACAAGACGTCA---AGGATTATTGATTCGTTACCTCACATTAACCTTTGACATC-GTCA---TT------ATGGGCTC------GAG---AT---------G---------A---TT-G--G--TT--TTCGGCC-TGTAGC--GGAAACCCAATCAGA
gi|17 : TATTAATTACG-ATAC-----AAAT-ACAAAGTGCACGCA-----ATGTTCACAATGTTGAGAAAAGG-A-CTCCA----C
gi|18 : GAAATGTTTAGAA-TGCGAACCGCACGAAAACGATGGACTGTCCAAGTATGTTTGTCCATTGTGTTTTAACAActtatttatgatct
gi|19 : caAAAT-AAAAATAGCACGCA-----GTGTTCATTATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-C
gi|2 : aattaaattatcaaTCTTCACAAG---T-----------------TCGTTATCCTGAACTGACCCTTGACATCAGTTAACAT------CATTGG----------------------------------------------T--AT--TGCTGCT-TGCA----------CCAATCAGAAAACGGCTTTTATAGTCGGTC--TAATAACGAAACTAAACACGCATGGCGC--GGTGTCGGTGACATGGTGTAG--AATTTATG-----------GCCAGCTACTAC--TAGACCGATACCGT------AGAATAATTTACGAAAATTCAATTTCTTTAAGGAAA-A---A-GTT-GACGAAGT-TTTAGAG-TACAAGCCGCATAAAAACGACGGATTGTCCACATAT-GTTGTTGATTATGTTTCAACTAATTGAACACGTTA-TCTATATTGACTATGAAC----TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATTACA-GTACATTACAAAT-AAAAATAACACGCA-----ATGTTCATGATGTTGAGAAAAGGAA-A-CCATTTTTTT-A--C-CA-TTTTGTATTTTTCG-TTTA-TGTTC--TTACC--ATTTTCATCTGAAACCATG-AA--TCTCACTGGCTGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCG--------------T-TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGG-TAACGAATCAAAAACTCTTc
gi|20 : ---TCA---AGGGTTATTGATTCGTTACCTCGCAC
gi|20 : AAG---TCA---AGGTTTATTGATTCGTTACCTCGCACTagtgcgaggtaacgaatcaataaaccttgactt
gi|21 : tcaagggttattgattcgttacctcgcac-GTACGTTTCAAAT-AACAATAACAAGCA-----ATGTTCATGATGTTGA-AAAAGG-A-A-CCA----CG
gi|22 : CTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTTGCA
gi|23 : AG---TCA---AGGGTTATTGATTCGTTACCTCGTAC
gi|3 : TCTTCACAAG---TCA---AGGGTTGTTGATTCGTT-------------CCTTGACAGCAGTCACCATTCAGAACATGGACTC------GAG---AC---------G---------GAACTT-G--TGATTGGTATTGCT-TG-----------CCCAATGAGAAAACGCCTTTTAAAATCGGCC--GAA-AATGAAGCTAAACACGCATGAT------CAT-AGCGA---GGTGTAG--AACTTGTG-----------ACTAGTTACCAC--TAAATTAACATCGT------AGATTGATTCGCGGAAA---AT-------AAAGGTACA---ATG--AGACAAAGT-TTCAGAA-TACGAGCCGCGTGAA--------------TAAGTATGGTTGTCGATTATGTTTCTACAAATTGAACACAATATTCAAAATTGACTAT----CA--TAAGTC--------TAGG------CAAATAA---AGGGCCAAAAAA-AGTCA------ATTATTAATTACG-ATA-----CAAAT-CAAAATAGCAGGCA--------------ATGTTGAGAAAAAG-a
gi|4 : caTCATCACAAG---TCA---AGAGTGATTGATTGGTT-------------CCTTGACATCAACCACCATTCAAAACATGAGTTC------GAG---AC---------GGAGCATATGA---TT-GG-T--TT--TGCTGCC-TATACC--GGAGACCCAATTAGAAAATGGCTTTTAAAAACGGTC--GAA-AAT--------------ATGGCATATGGTGTCGGCTATATA-CATAG--AATTTGTA-----------GTCTGCTACTAC--TAGATCGATACCGT------AGATTGATTTGCGCAAAATCAGTTTCTTTGAAAGA--A---AGATTTGACGAAGT-TTTTCACTTACGAACTGCATGAG--------------CAAGTATGGTTGTCATTTATGTTTCTACAAACTGAAGACGGTATTCAAAATTGA
gi|5 : gcaATATTTCAACAATTTGAACA------------TTGAATATGAACTA----AATCA-------TAAGCTGTGACAATTAT---AGGAC--A-AAA-TATGA------ATCATAAATT-----T-CATTACAAAT-AAAAGTAGTACGCA-----ATGTTCAGGATGTTCA--AAGGA-A-C-TCG----TGT-AAGG-CCATGCTGTACTCTCCG-TTTAATGTTC--TTACCAAACTTTAATCTGTAACAA-GGAA--TATCATTGGCTGATTT-A-AATTTTACATTTTTGTAGCATATTGCGGCATTCTTTGTCTCAAG-CTCAGAT-TTCAAATGGCGACTGATGTCAATG---GTTAGTGCAAGG-TAACGAATCAATAACCCT
gi|6 : aATTAAACAAGTTATTGAAAATT-ACATTGAAATAG-TAAATGAAATAGACTAAGTTACAACA--TAACACGGAAT--GGAAA-TGTGA------ATTATTATTTACA-TTACATATCAAAT-CAA-----CACACA-----ATGTTCATGATGTTGAGAAAAAT-ACC-CCA----TGTCAAGACCATGTTTTTACCTTCTG-TTTT-TGCTCGGGTACCAAACT------------AG-G-AA--TCCCATTGGTGGATTT-ATT-----------TT-TAGCTTATTACGTCATCTTCTGTCCCAAA-CCCATGT-TTTGACTAATGACTGATGGCAAGGATAATTAAAGCAAGG-TACCGAATCAAGAACTCCTGACcaa
gi|7 : TCTTCACAAG---TCA---AGGGTTATTGATTCGCTACCTCGCACTAATCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---ATG--------G---------A------G--G--TT--TGCTGCT-TGTACC--GGAGACCCAATTAGAA------T----TAATCGGCCATAAA-AACGAAt
gi|7 : TTACCACGATAGATCGATACAGT------AGATTGA------AAAA-TAATTTTCTTTGAAGG-ACA---A---TCGATAAGTT-TTTAGAA-TATGAGCggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|8 : tcttcacaagtcaagggttattgattcgctacctcgcactaatccttgacatcagtcaccattcaaaacatgggctcgagatggaggtttgctgcttgtaccggagacccaattagaattaatcggccataaaaacgaaggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcataTTGACTATGAACT---TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATCACA-GTACATTACAAATAAAAAATAACACGCA-----ATGTTCATGATGTT-AGAAAAGGAA-A-CCA----TTT-A--C-CATTTTGGTATTTTTCGTTTTA-TGTTC--TTACC-ATTTTTCATCTGAACC---GTAA--TCTCACTGG-TGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCGT-------------T-TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGGTTAACG-ATCAA-AACTCTTGACaatggat
gi|9 : TCTTCACAAG---TCATTGAGA-----TGATTCGTTACCTCGCACTAACCCTTGACACCAAT--------AAAACATGGGCTCTTAATGGAGCATAT---------G---------A---TC-GG-T--TT--TGCTCCC-TGTACC--GGAGATCCAATCAGAAAACAGATTTCATATTCGGCT--AAA-AGCGAGACTAAACACAAAAGGCTT--AACGTCGACAAGATAATGTAG--AATTTGTG-----------GCCAGTAACCAT--TAGACCGATACCGT------AGACTGAATTGCAAAAATTAATTTCCTTTAAt
Alignments
lowQualScore : 111111 5555555555555555555555555555555555555 1111 1 333333333333 111111 111111111 11111111111 2222 222222222 111 1111 333333 111 1111 1 11 444444444444444 5555555555555 111
lowQualScore : 555 555 0 5 88 222222 7777777777777777777777777777777777777 66 2 4 1 0000 1 5 3 3 66 4 66 44 9999 2 3 2 1 77 1 000000000000 66 444444 00 6 2 1 0 333333333 5 5 1 99999999999 1 44 3 555 3 1 0000 111111111 3 1 3 000 2222 5 222222 000 8 4 4 99999 1 7 999 8888 5 3333 3 0 77 88 0 77 5 0 333 1 555 1 99 1 444444444444444 6 1 8888888888888 1 0 22 1 444 1 8 0 8
lowQualScore : ... ... . . .. ...... ..................................... .. . . . .... . . . . .. . .. .. .... . . . . .. . ............ .. ...... .. . . . . ......... . . . ........... . .. . ... . . .... ......... . . . ... .... . ...... ... . . . ..... . . ... .... . .... . . .. .. . .. . . ... . ... . .. . ............... . . ............. . . .. . ... . . . .
lowQualScore : 888 888 2 6 99 888888 0000000000000000000000000000000000000 11 0 4 0 1111 8 1 4 6 99 4 66 77 0000 7 0 4 7 99 7 111111111111 99 444444 55 5 5 7 7 444444444 0 0 7 55555555555 5 00 2 333 2 0 7777 888888888 7 5 5 000 3333 7 999999 222 2 1 0 11111 4 3 555 5555 0 6666 9 7 44 11 4 99 0 4 777 6 999 4 33 0 777777777777777 7 0 2222222222222 0 6 00 4 000 0 0 8 8
consensus : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAGC-CA--TTTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
Reference ( family-509 ) : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAGCCCA-ATTTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
gi|1 : TCTTCACAAG---TCA---AGGGTTATTAATCCGTTACCTCGCACTAACCCTTGACATCAATCAGCATT-GAAACATGGGCTC------GAG---AT---------A---------A---TT-G--T--TT--TG-TGCCCTGTAGT--GAAGACCCAATCAGAT--CTGCATCTATAGTCGGCC--GAA-AACGAAAATAAATACAAGTGGTGC--AGCGTCAGAAACATGATGTTA--AATGTATT-----------ACCAGTTATCAC--AAGGCCAACACCGT------AGATTAATTTACAAAAATTAATTTTCTATGAGAGAACA---ATATCAAGCAAAGT-TTAATAA-TACGAGCTGCATGAAAACAACGGATTGCCCAGGTA-AATTGTGTATTGTGTTTTAACAAACTGATCACATTATCTAAAATTGTTTATGTACTATTTAAATCA-------TCAGTTATCGCATTTAA---AGAAC--TAATA-TGTGA------ATTAATAATTACATGTACGTTTCAAAT-GAAAATAACACATACTATGATGTTCGTGATATTGAGAAAAAG-A-C-TCA----CGC-AAGA-TACTTTTGTACTATCCA-ATTG-TGCTC--TTACTAAAATATAATCTGAATCAA-A-AAAGTCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTGCGTCATCCCCCGTCTCGAGAGCA-TATTCGAACGGTGACTGATGTTAAGG---GTTAGTGCAAGG-TAACGAATTAATAACTTTTTAC
gi|10 : CACTCATGGCGC--GGCGTCGGCATCATG-TGTAATTAATTTTTTTTTTTTTTTTTGCCAGTTAGCAC--TAGGCCAGTACCGT------AGATTAAT--GTGAAAATTCATTTTCTTTGAGGGAACAATTATATTAAACGAATT-TTTAGAA-TACGGGCCGC-TGAATACGACGAA-CGTCC
gi|11 : AA---AGGAC--AAAAACTCTGA------ATTACTAATTACG------TTCCAATT-AGAAATAACATACA-----ATGTTCATGATGTTGAGAAAAAG-ATC-CCG----CGT-AAAACCATGTGTTCATTTTCTG-------------TTACCAAATTTGCATCTGAAACGA-G-GAT-TCTCATTGGCTGATTC-A-AT----------TT-TAGCGT
gi|12 : TTTTCACAAC---TCA---AGGGTTATTAATTCGTTACTTTGCATTATCCCTTGTCATCAGTCACCATTCAAAACATGTGCTT------AAG---ACTGAGCATATG---------A---TTGG--T--GT--TGCAATA-TGTAGCTTGGAG--CCAATCATACGACAGCTTTCATAATCGAAC--GAA-AAGGA
gi|13 : a-AATGAAAACAAACACACGTGGTGC--GGCATCAGAAACATACTGT-------------------------TAGTTACCTC--AAATCCAACACCATTATGATACATTAATTTGAAAATATTCATTTCCTTTGAGGGAACA---ATATCAAACGAAGT-TTTAGAA-TA
gi|14 : AAAGGATAGGCTC------GAGG--AT---------G---------A---TT-GGTT--TT--TGC-GAC-AGAAGC--GGAGACCCAATCAGAAAACCGCACCTA-AACCGGCC--AAA-AACGAAAA-AAA
gi|15 : ccttggaaacatcaagatcgatagactAAATAGCACGCA-----ATGTTAATGATGTTGTTACAGGA-A-C-CCA----CGT-ATGA-TATTTTTTTACTTTCCG-TTTG-TTCTC--TTACCAAACTTGCATCTGAAACAA-G-AAG-TCTCATTG
gi|16 : TTCACAAGACGTCA---AGGATTATTGATTCGTTACCTCACATTAACCTTTGACATC-GTCA---TT------ATGGGCTC------GAG---AT---------G---------A---TT-G--G--TT--TTCGGCC-TGTAGC--GGAAACCCAATCAGA
gi|17 : TATTAATTACG-ATAC-----AAAT-ACAAAGTGCACGCA-----ATGTTCACAATGTTGAGAAAAGG-A-CTCCA----C
gi|18 : GAAATGTTTAGAA-TGCGAACCGCACGAAAACGATGGACTGTCCAAGTATGTTTGTCCATTGTGTTTTAACAActtatttatgatct
gi|19 : caAAAT-AAAAATAGCACGCA-----GTGTTCATTATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-C
gi|2 : aattaaattatcaaTCTTCACAAG---T-----------------TCGTTATCCTGAACTGACCCTTGACATCAGTTAACAT------CATTGG----------------------------------------------T--AT--TGCTGCT-TGCA----------CCAATCAGAAAACGGCTTTTATAGTCGGTC--TAATAACGAAACTAAACACGCATGGCGC--GGTGTCGGTGACATGGTGTAG--AATTTATG-----------GCCAGCTACTAC--TAGACCGATACCGT------AGAATAATTTACGAAAATTCAATTTCTTTAAGGAAA-A---A-GTT-GACGAAGT-TTTAGAG-TACAAGCCGCATAAAAACGACGGATTGTCCACATAT-GTTGTTGATTATGTTTCAACTAATTGAACACGTTA-TCTATATTGACTATGAAC----TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATTACA-GTACATTACAAAT-AAAAATAACACGCA-----ATGTTCATGATGTTGAGAAAAGGAA-A-CCATTTTTTT-A--C-CA-TTTTGTATTTTTCG-TTTA-TGTTC--TTACC--ATTTTCATCTGAAACCATG-AA--TCTCACTGGCTGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCG-------------TTTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGG-TAACGAATCAAAAACTCTTc
gi|20 : ---TCA---AGGGTTATTGATTCGTTACCTCGCAC
gi|20 : AAG---TCA---AGGTTTATTGATTCGTTACCTCGCACTagtgcgaggtaacgaatcaataaaccttgactt
gi|21 : tcaagggttattgattcgttacctcgcac-GTACGTTTCAAAT-AACAATAACAAGCA-----ATGTTCATGATGTTGA-AAAAGG-A-A-CCA----CG
gi|22 : CTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTTGCA
gi|23 : AG---TCA---AGGGTTATTGATTCGTTACCTCGTAC
gi|3 : TCTTCACAAG---TCA---AGGGTTGTTGATTCGTT-------------CCTTGACAGCAGTCACCATTCAGAACATGGACTC------GAG---AC---------G---------GAACTT-G--TGATTGGTATTGCT-TG-----------CCCAATGAGAAAACGCCTTTTAAAATCGGCC--GAA-AATGAAGCTAAACACGCATGAT------CAT-AGCGA---GGTGTAG--AACTTGTG-----------ACTAGTTACCAC--TAAATTAACATCGT------AGATTGATTCGCGGAAA---AT-------AAAGGTACA---ATG--AGACAAAGT-TTCAGAA-TACGAGCCGCGTGAA--------------TAAGTATGGTTGTCGATTATGTTTCTACAAATTGAACACAATATTCAAAATTGACTAT----CA--TAAGTC--------TAGG------CAAATAA---AGGGCCAAAAAA-AGTCA------ATTATTAATTACG-ATA-----CAAAT-CAAAATAGCAGGCA--------------ATGTTGAGAAAAAG-a
gi|4 : caTCATCACAAG---TCA---AGAGTGATTGATTGGTT-------------CCTTGACATCAACCACCATTCAAAACATGAGTTC------GAG---AC---------GGAGCATATGA---TT-GG-T--TT--TGCTGCC-TATACC--GGAGACCCAATTAGAAAATGGCTTTTAAAAACGGTC--GAA-AAT--------------ATGGCATATGGTGTCGGCTATATA-CATAG--AATTTGTA-----------GTCTGCTACTAC--TAGATCGATACCGT------AGATTGATTTGCGCAAAATCAGTTTCTTTGAAAGA--A---AGATTTGACGAAGT-TTTTCACTTACGAACTGCATGAG--------------CAAGTATGGTTGTCATTTATGTTTCTACAAACTGAAGACGGTATTCAAAATTGA
gi|5 : gcaATATTTCAACAATTTGAACA------------TTGAATATGAACTA----AATCA-------TAAGCTGTGACAATTAT---AGGAC--A-AAA-TATGA------ATCATAAATT-----T-CATTACAAAT-AAAAGTAGTACGCA-----ATGTTCAGGATGTTCA--AAGGA-A-C-TCG----TGT-AAGG-CCATGCTGTACTCTCCG-TTTAATGTTC--TTACCAAACTTTAATCTGTAACAA-GGAA--TATCATTGGCTGATTT-A-AATTTTACATTTTTGTAGCATATTGCGGCATTCTTTGTCTCAAGCTCAGATTTCAAATGGCGACTGATGTCAATG---GTTAGTGCAAGG-TAACGAATCAATAACCCT
gi|6 : aATTAAACAAGTTATTGAAAATT-ACATTGAAATAG-TAAATGAAATAGACTAAGTTACAACA--TAACACGGAAT--GGAAA-TGTGA------ATTATTATTTACA-TTACATATCAAAT-CAA-----CACACA-----ATGTTCATGATGTTGAGAAAAAT-ACC-CCA----TGTCAAGACCATGTTTTTACCTTCTG-TTTT-TGCTCGGGTACCAAACT------------AG-G-AA--TCCCATTGGTGGATTT-ATT-----------TT-TAGCTTATTACGTCATCTTCTGTCCCAAACCCATGTTTTGACTAATGACTGATGGCAAGGATAATTAAAGCAAGG-TACCGAATCAAGAACTCCTGACcaa
gi|7 : TCTTCACAAG---TCA---AGGGTTATTGATTCGCTACCTCGCACTAATCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---ATG--------G---------A------G--G--TT--TGCTGCT-TGTACC--GGAGACCCAATTAGAA------T----TAATCGGCCATAAA-AACGAAt
gi|7 : TTACCACGATAGATCGATACAGT------AGATTGA------AAAA-TAATTTTCTTTGAAGG-ACA---A---TCGATAAGTT-TTTAGAA-TATGAGCggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|8 : tcttcacaagtcaagggttattgattcgctacctcgcactaatccttgacatcagtcaccattcaaaacatgggctcgagatggaggtttgctgcttgtaccggagacccaattagaattaatcggccataaaaacgaaggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcataTTGACTATGAACT---TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATCACA-GTACATTACAAATAAAAAATAACACGCA-----ATGTTCATGATGTT-AGAAAAGGAA-A-CCA----TTT-A--C-CATTTTGGTATTTTTCGTTTTA-TGTTC--TTACC-ATTTTTCATCTGAACC---GTAA--TCTCACTGG-TGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCGT------------TTTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGGTTAACG-ATCAA-AACTCTTGACaatggat
gi|9 : TCTTCACAAG---TCATTGAGA-----TGATTCGTTACCTCGCACTAACCCTTGACACCAAT--------AAAACATGGGCTCTTAATGGAGCATAT---------G---------A---TC-GG-T--TT--TGCTCCC-TGTACC--GGAGATCCAATCAGAAAACAGATTTCATATTCGGCT--AAA-AGCGAGACTAAACACAAAAGGCTT--AACGTCGACAAGATAATGTAG--AATTTGTG-----------GCCAGTAACCAT--TAGACCGATACCGT------AGACTGAATTGCAAAAATTAATTTCCTTTAAt
Alignments
lowQualScore : 111111 5555555555555555555555555555555555555 1111 1 333333333333 111111 111111111 11111111111 2222 222222222 111 1111 333333 111 1111 1 11 444444444444444 66666666666666 111
lowQualScore : 555 555 0 5 88 222222 7777777777777777777777777777777777777 66 2 4 1 0000 1 5 3 3 66 4 66 44 9999 2 3 2 1 77 1 000000000000 66 444444 00 6 2 1 0 333333333 5 5 1 99999999999 1 44 3 555 3 1 0000 111111111 3 1 3 000 2222 5 222222 000 8 4 4 99999 1 7 999 8888 5 3333 3 0 77 88 0 77 5 0 333 1 555 1 99 1 444444444444444 6 1 77777777777777 8 1 0 22 1 444 1 8 0 8
lowQualScore : ... ... . . .. ...... ..................................... .. . . . .... . . . . .. . .. .. .... . . . . .. . ............ .. ...... .. . . . . ......... . . . ........... . .. . ... . . .... ......... . . . ... .... . ...... ... . . . ..... . . ... .... . .... . . .. .. . .. . . ... . ... . .. . ............... . . .............. . . . .. . ... . . . .
lowQualScore : 888 888 2 6 99 888888 0000000000000000000000000000000000000 11 0 4 0 1111 8 1 4 6 99 4 66 77 0000 7 0 4 7 99 7 111111111111 99 444444 55 5 5 7 7 444444444 0 0 7 55555555555 5 00 2 333 2 0 7777 888888888 7 5 5 000 3333 7 999999 222 2 1 0 11111 4 3 555 5555 0 6666 9 7 44 11 4 99 0 4 777 6 999 4 33 0 777777777777777 7 0 44444444444444 0 0 6 00 4 000 0 0 8 8
consensus : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAG-CCCA-AT-TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
Reference ( family-509 ) : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAG-CC---AT-TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
gi|1 : TCTTCACAAG---TCA---AGGGTTATTAATCCGTTACCTCGCACTAACCCTTGACATCAATCAGCATT-GAAACATGGGCTC------GAG---AT---------A---------A---TT-G--T--TT--TG-TGCCCTGTAGT--GAAGACCCAATCAGAT--CTGCATCTATAGTCGGCC--GAA-AACGAAAATAAATACAAGTGGTGC--AGCGTCAGAAACATGATGTTA--AATGTATT-----------ACCAGTTATCAC--AAGGCCAACACCGT------AGATTAATTTACAAAAATTAATTTTCTATGAGAGAACA---ATATCAAGCAAAGT-TTAATAA-TACGAGCTGCATGAAAACAACGGATTGCCCAGGTA-AATTGTGTATTGTGTTTTAACAAACTGATCACATTATCTAAAATTGTTTATGTACTATTTAAATCA-------TCAGTTATCGCATTTAA---AGAAC--TAATA-TGTGA------ATTAATAATTACATGTACGTTTCAAAT-GAAAATAACACATACTATGATGTTCGTGATATTGAGAAAAAG-A-C-TCA----CGC-AAGA-TACTTTTGTACTATCCA-ATTG-TGCTC--TTACTAAAATATAATCTGAATCAA-A-AAAGTCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTGCGTCATCCCCCGTCTCGAGAGC---ATATTCGAACGGTGACTGATGTTAAGG---GTTAGTGCAAGG-TAACGAATTAATAACTTTTTAC
gi|10 : CACTCATGGCGC--GGCGTCGGCATCATG-TGTAATTAATTTTTTTTTTTTTTTTTGCCAGTTAGCAC--TAGGCCAGTACCGT------AGATTAAT--GTGAAAATTCATTTTCTTTGAGGGAACAATTATATTAAACGAATT-TTTAGAA-TACGGGCCGC-TGAATACGACGAA-CGTCC
gi|11 : AA---AGGAC--AAAAACTCTGA------ATTACTAATTACG------TTCCAATT-AGAAATAACATACA-----ATGTTCATGATGTTGAGAAAAAG-ATC-CCG----CGT-AAAACCATGTGTTCATTTTCTG-------------TTACCAAATTTGCATCTGAAACGA-G-GAT-TCTCATTGGCTGATTC-A-AT----------TT-TAGCGT
gi|12 : TTTTCACAAC---TCA---AGGGTTATTAATTCGTTACTTTGCATTATCCCTTGTCATCAGTCACCATTCAAAACATGTGCTT------AAG---ACTGAGCATATG---------A---TTGG--T--GT--TGCAATA-TGTAGCTTGGAG--CCAATCATACGACAGCTTTCATAATCGAAC--GAA-AAGGA
gi|13 : a-AATGAAAACAAACACACGTGGTGC--GGCATCAGAAACATACTGT-------------------------TAGTTACCTC--AAATCCAACACCATTATGATACATTAATTTGAAAATATTCATTTCCTTTGAGGGAACA---ATATCAAACGAAGT-TTTAGAA-TA
gi|14 : AAAGGATAGGCTC------GAGG--AT---------G---------A---TT-GGTT--TT--TGC-GAC-AGAAGC--GGAGACCCAATCAGAAAACCGCACCTA-AACCGGCC--AAA-AACGAAAA-AAA
gi|15 : ccttggaaacatcaagatcgatagactAAATAGCACGCA-----ATGTTAATGATGTTGTTACAGGA-A-C-CCA----CGT-ATGA-TATTTTTTTACTTTCCG-TTTG-TTCTC--TTACCAAACTTGCATCTGAAACAA-G-AAG-TCTCATTG
gi|16 : TTCACAAGACGTCA---AGGATTATTGATTCGTTACCTCACATTAACCTTTGACATC-GTCA---TT------ATGGGCTC------GAG---AT---------G---------A---TT-G--G--TT--TTCGGCC-TGTAGC--GGAAACCCAATCAGA
gi|17 : TATTAATTACG-ATAC-----AAAT-ACAAAGTGCACGCA-----ATGTTCACAATGTTGAGAAAAGG-A-CTCCA----C
gi|18 : GAAATGTTTAGAA-TGCGAACCGCACGAAAACGATGGACTGTCCAAGTATGTTTGTCCATTGTGTTTTAACAActtatttatgatct
gi|19 : caAAAT-AAAAATAGCACGCA-----GTGTTCATTATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-C
gi|2 : aattaaattatcaaTCTTCACAAG---T-----------------TCGTTATCCTGAACTGACCCTTGACATCAGTTAACAT------CATTGG----------------------------------------------T--AT--TGCTGCT-TGCA----------CCAATCAGAAAACGGCTTTTATAGTCGGTC--TAATAACGAAACTAAACACGCATGGCGC--GGTGTCGGTGACATGGTGTAG--AATTTATG-----------GCCAGCTACTAC--TAGACCGATACCGT------AGAATAATTTACGAAAATTCAATTTCTTTAAGGAAA-A---A-GTT-GACGAAGT-TTTAGAG-TACAAGCCGCATAAAAACGACGGATTGTCCACATAT-GTTGTTGATTATGTTTCAACTAATTGAACACGTTA-TCTATATTGACTATGAAC----TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATTACA-GTACATTACAAAT-AAAAATAACACGCA-----ATGTTCATGATGTTGAGAAAAGGAA-A-CCATTTTTTT-A--C-CA-TTTTGTATTTTTCG-TTTA-TGTTC--TTACC--ATTTTCATCTGAAACCATG-AA--TCTCACTGGCTGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCG--------------T-TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGG-TAACGAATCAAAAACTCTTc
gi|20 : ---TCA---AGGGTTATTGATTCGTTACCTCGCAC
gi|20 : AAG---TCA---AGGTTTATTGATTCGTTACCTCGCACTagtgcgaggtaacgaatcaataaaccttgactt
gi|21 : tcaagggttattgattcgttacctcgcac-GTACGTTTCAAAT-AACAATAACAAGCA-----ATGTTCATGATGTTGA-AAAAGG-A-A-CCA----CG
gi|22 : CTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTTGCA
gi|23 : AG---TCA---AGGGTTATTGATTCGTTACCTCGTAC
gi|3 : TCTTCACAAG---TCA---AGGGTTGTTGATTCGTT-------------CCTTGACAGCAGTCACCATTCAGAACATGGACTC------GAG---AC---------G---------GAACTT-G--TGATTGGTATTGCT-TG-----------CCCAATGAGAAAACGCCTTTTAAAATCGGCC--GAA-AATGAAGCTAAACACGCATGAT------CAT-AGCGA---GGTGTAG--AACTTGTG-----------ACTAGTTACCAC--TAAATTAACATCGT------AGATTGATTCGCGGAAA---AT-------AAAGGTACA---ATG--AGACAAAGT-TTCAGAA-TACGAGCCGCGTGAA--------------TAAGTATGGTTGTCGATTATGTTTCTACAAATTGAACACAATATTCAAAATTGACTAT----CA--TAAGTC--------TAGG------CAAATAA---AGGGCCAAAAAA-AGTCA------ATTATTAATTACG-ATA-----CAAAT-CAAAATAGCAGGCA--------------ATGTTGAGAAAAAG-a
gi|4 : caTCATCACAAG---TCA---AGAGTGATTGATTGGTT-------------CCTTGACATCAACCACCATTCAAAACATGAGTTC------GAG---AC---------GGAGCATATGA---TT-GG-T--TT--TGCTGCC-TATACC--GGAGACCCAATTAGAAAATGGCTTTTAAAAACGGTC--GAA-AAT--------------ATGGCATATGGTGTCGGCTATATA-CATAG--AATTTGTA-----------GTCTGCTACTAC--TAGATCGATACCGT------AGATTGATTTGCGCAAAATCAGTTTCTTTGAAAGA--A---AGATTTGACGAAGT-TTTTCACTTACGAACTGCATGAG--------------CAAGTATGGTTGTCATTTATGTTTCTACAAACTGAAGACGGTATTCAAAATTGA
gi|5 : gcaATATTTCAACAATTTGAACA------------TTGAATATGAACTA----AATCA-------TAAGCTGTGACAATTAT---AGGAC--A-AAA-TATGA------ATCATAAATT-----T-CATTACAAAT-AAAAGTAGTACGCA-----ATGTTCAGGATGTTCA--AAGGA-A-C-TCG----TGT-AAGG-CCATGCTGTACTCTCCG-TTTAATGTTC--TTACCAAACTTTAATCTGTAACAA-GGAA--TATCATTGGCTGATTT-A-AATTTTACATTTTTGTAGCATATTGCGGCATTCTTTGTCTCAAG-CTCAGAT-TTCAAATGGCGACTGATGTCAATG---GTTAGTGCAAGG-TAACGAATCAATAACCCT
gi|6 : aATTAAACAAGTTATTGAAAATT-ACATTGAAATAG-TAAATGAAATAGACTAAGTTACAACA--TAACACGGAAT--GGAAA-TGTGA------ATTATTATTTACA-TTACATATCAAAT-CAA-----CACACA-----ATGTTCATGATGTTGAGAAAAAT-ACC-CCA----TGTCAAGACCATGTTTTTACCTTCTG-TTTT-TGCTCGGGTACCAAACT------------AG-G-AA--TCCCATTGGTGGATTT-ATT-----------TT-TAGCTTATTACGTCATCTTCTGTCCCAAA-CCCATGT-TTTGACTAATGACTGATGGCAAGGATAATTAAAGCAAGG-TACCGAATCAAGAACTCCTGACcaa
gi|7 : TCTTCACAAG---TCA---AGGGTTATTGATTCGCTACCTCGCACTAATCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---ATG--------G---------A------G--G--TT--TGCTGCT-TGTACC--GGAGACCCAATTAGAA------T----TAATCGGCCATAAA-AACGAAt
gi|7 : TTACCACGATAGATCGATACAGT------AGATTGA------AAAA-TAATTTTCTTTGAAGG-ACA---A---TCGATAAGTT-TTTAGAA-TATGAGCggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|8 : tcttcacaagtcaagggttattgattcgctacctcgcactaatccttgacatcagtcaccattcaaaacatgggctcgagatggaggtttgctgcttgtaccggagacccaattagaattaatcggccataaaaacgaaggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcataTTGACTATGAACT---TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATCACA-GTACATTACAAATAAAAAATAACACGCA-----ATGTTCATGATGTT-AGAAAAGGAA-A-CCA----TTT-A--C-CATTTTGGTATTTTTCGTTTTA-TGTTC--TTACC-ATTTTTCATCTGAACC---GTAA--TCTCACTGG-TGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCGT-------------T-TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGGTTAACG-ATCAA-AACTCTTGACaatggat
gi|9 : TCTTCACAAG---TCATTGAGA-----TGATTCGTTACCTCGCACTAACCCTTGACACCAAT--------AAAACATGGGCTCTTAATGGAGCATAT---------G---------A---TC-GG-T--TT--TGCTCCC-TGTACC--GGAGATCCAATCAGAAAACAGATTTCATATTCGGCT--AAA-AGCGAGACTAAACACAAAAGGCTT--AACGTCGACAAGATAATGTAG--AATTTGTG-----------GCCAGTAACCAT--TAGACCGATACCGT------AGACTGAATTGCAAAAATTAATTTCCTTTAAt
Alignments
lowQualScore : 111111 5555555555555555555555555555555555555 1111 1 333333333333 111111 111111111 11111111111 2222 222222222 111 1111 333333 111 1111 1 11 444444444444444 5555555555555 111
lowQualScore : 555 555 0 5 88 222222 7777777777777777777777777777777777777 66 2 4 1 0000 1 5 3 3 66 4 66 44 9999 2 3 2 1 77 1 000000000000 66 444444 00 6 2 1 0 333333333 5 5 1 99999999999 1 44 3 555 3 1 0000 111111111 3 1 3 000 2222 5 222222 000 8 4 4 99999 1 7 999 8888 5 3333 3 0 77 88 0 77 5 0 333 1 555 1 99 1 444444444444444 6 1 8888888888888 1 0 22 1 444 1 8 0 8
lowQualScore : ... ... . . .. ...... ..................................... .. . . . .... . . . . .. . .. .. .... . . . . .. . ............ .. ...... .. . . . . ......... . . . ........... . .. . ... . . .... ......... . . . ... .... . ...... ... . . . ..... . . ... .... . .... . . .. .. . .. . . ... . ... . .. . ............... . . ............. . . .. . ... . . . .
lowQualScore : 888 888 2 6 99 888888 0000000000000000000000000000000000000 11 0 4 0 1111 8 1 4 6 99 4 66 77 0000 7 0 4 7 99 7 111111111111 99 444444 55 5 5 7 7 444444444 0 0 7 55555555555 5 00 2 333 2 0 7777 888888888 7 5 5 000 3333 7 999999 222 2 1 0 11111 4 3 555 5555 0 6666 9 7 44 11 4 99 0 4 777 6 999 4 33 0 777777777777777 7 0 2222222222222 0 6 00 4 000 0 0 8 8
consensus : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAGC-CA--TTTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
Reference ( family-509 ) : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAGCCCA-ATTTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
gi|1 : TCTTCACAAG---TCA---AGGGTTATTAATCCGTTACCTCGCACTAACCCTTGACATCAATCAGCATT-GAAACATGGGCTC------GAG---AT---------A---------A---TT-G--T--TT--TG-TGCCCTGTAGT--GAAGACCCAATCAGAT--CTGCATCTATAGTCGGCC--GAA-AACGAAAATAAATACAAGTGGTGC--AGCGTCAGAAACATGATGTTA--AATGTATT-----------ACCAGTTATCAC--AAGGCCAACACCGT------AGATTAATTTACAAAAATTAATTTTCTATGAGAGAACA---ATATCAAGCAAAGT-TTAATAA-TACGAGCTGCATGAAAACAACGGATTGCCCAGGTA-AATTGTGTATTGTGTTTTAACAAACTGATCACATTATCTAAAATTGTTTATGTACTATTTAAATCA-------TCAGTTATCGCATTTAA---AGAAC--TAATA-TGTGA------ATTAATAATTACATGTACGTTTCAAAT-GAAAATAACACATACTATGATGTTCGTGATATTGAGAAAAAG-A-C-TCA----CGC-AAGA-TACTTTTGTACTATCCA-ATTG-TGCTC--TTACTAAAATATAATCTGAATCAA-A-AAAGTCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTGCGTCATCCCCCGTCTCGAGAGCA-TATTCGAACGGTGACTGATGTTAAGG---GTTAGTGCAAGG-TAACGAATTAATAACTTTTTAC
gi|10 : CACTCATGGCGC--GGCGTCGGCATCATG-TGTAATTAATTTTTTTTTTTTTTTTTGCCAGTTAGCAC--TAGGCCAGTACCGT------AGATTAAT--GTGAAAATTCATTTTCTTTGAGGGAACAATTATATTAAACGAATT-TTTAGAA-TACGGGCCGC-TGAATACGACGAA-CGTCC
gi|11 : AA---AGGAC--AAAAACTCTGA------ATTACTAATTACG------TTCCAATT-AGAAATAACATACA-----ATGTTCATGATGTTGAGAAAAAG-ATC-CCG----CGT-AAAACCATGTGTTCATTTTCTG-------------TTACCAAATTTGCATCTGAAACGA-G-GAT-TCTCATTGGCTGATTC-A-AT----------TT-TAGCGT
gi|12 : TTTTCACAAC---TCA---AGGGTTATTAATTCGTTACTTTGCATTATCCCTTGTCATCAGTCACCATTCAAAACATGTGCTT------AAG---ACTGAGCATATG---------A---TTGG--T--GT--TGCAATA-TGTAGCTTGGAG--CCAATCATACGACAGCTTTCATAATCGAAC--GAA-AAGGA
gi|13 : a-AATGAAAACAAACACACGTGGTGC--GGCATCAGAAACATACTGT-------------------------TAGTTACCTC--AAATCCAACACCATTATGATACATTAATTTGAAAATATTCATTTCCTTTGAGGGAACA---ATATCAAACGAAGT-TTTAGAA-TA
gi|14 : AAAGGATAGGCTC------GAGG--AT---------G---------A---TT-GGTT--TT--TGC-GAC-AGAAGC--GGAGACCCAATCAGAAAACCGCACCTA-AACCGGCC--AAA-AACGAAAA-AAA
gi|15 : ccttggaaacatcaagatcgatagactAAATAGCACGCA-----ATGTTAATGATGTTGTTACAGGA-A-C-CCA----CGT-ATGA-TATTTTTTTACTTTCCG-TTTG-TTCTC--TTACCAAACTTGCATCTGAAACAA-G-AAG-TCTCATTG
gi|16 : TTCACAAGACGTCA---AGGATTATTGATTCGTTACCTCACATTAACCTTTGACATC-GTCA---TT------ATGGGCTC------GAG---AT---------G---------A---TT-G--G--TT--TTCGGCC-TGTAGC--GGAAACCCAATCAGA
gi|17 : TATTAATTACG-ATAC-----AAAT-ACAAAGTGCACGCA-----ATGTTCACAATGTTGAGAAAAGG-A-CTCCA----C
gi|18 : GAAATGTTTAGAA-TGCGAACCGCACGAAAACGATGGACTGTCCAAGTATGTTTGTCCATTGTGTTTTAACAActtatttatgatct
gi|19 : caAAAT-AAAAATAGCACGCA-----GTGTTCATTATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-C
gi|2 : aattaaattatcaaTCTTCACAAG---T-----------------TCGTTATCCTGAACTGACCCTTGACATCAGTTAACAT------CATTGG----------------------------------------------T--AT--TGCTGCT-TGCA----------CCAATCAGAAAACGGCTTTTATAGTCGGTC--TAATAACGAAACTAAACACGCATGGCGC--GGTGTCGGTGACATGGTGTAG--AATTTATG-----------GCCAGCTACTAC--TAGACCGATACCGT------AGAATAATTTACGAAAATTCAATTTCTTTAAGGAAA-A---A-GTT-GACGAAGT-TTTAGAG-TACAAGCCGCATAAAAACGACGGATTGTCCACATAT-GTTGTTGATTATGTTTCAACTAATTGAACACGTTA-TCTATATTGACTATGAAC----TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATTACA-GTACATTACAAAT-AAAAATAACACGCA-----ATGTTCATGATGTTGAGAAAAGGAA-A-CCATTTTTTT-A--C-CA-TTTTGTATTTTTCG-TTTA-TGTTC--TTACC--ATTTTCATCTGAAACCATG-AA--TCTCACTGGCTGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCG-------------TTTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGG-TAACGAATCAAAAACTCTTc
gi|20 : ---TCA---AGGGTTATTGATTCGTTACCTCGCAC
gi|20 : AAG---TCA---AGGTTTATTGATTCGTTACCTCGCACTagtgcgaggtaacgaatcaataaaccttgactt
gi|21 : tcaagggttattgattcgttacctcgcac-GTACGTTTCAAAT-AACAATAACAAGCA-----ATGTTCATGATGTTGA-AAAAGG-A-A-CCA----CG
gi|22 : CTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTTGCA
gi|23 : AG---TCA---AGGGTTATTGATTCGTTACCTCGTAC
gi|3 : TCTTCACAAG---TCA---AGGGTTGTTGATTCGTT-------------CCTTGACAGCAGTCACCATTCAGAACATGGACTC------GAG---AC---------G---------GAACTT-G--TGATTGGTATTGCT-TG-----------CCCAATGAGAAAACGCCTTTTAAAATCGGCC--GAA-AATGAAGCTAAACACGCATGAT------CAT-AGCGA---GGTGTAG--AACTTGTG-----------ACTAGTTACCAC--TAAATTAACATCGT------AGATTGATTCGCGGAAA---AT-------AAAGGTACA---ATG--AGACAAAGT-TTCAGAA-TACGAGCCGCGTGAA--------------TAAGTATGGTTGTCGATTATGTTTCTACAAATTGAACACAATATTCAAAATTGACTAT----CA--TAAGTC--------TAGG------CAAATAA---AGGGCCAAAAAA-AGTCA------ATTATTAATTACG-ATA-----CAAAT-CAAAATAGCAGGCA--------------ATGTTGAGAAAAAG-a
gi|4 : caTCATCACAAG---TCA---AGAGTGATTGATTGGTT-------------CCTTGACATCAACCACCATTCAAAACATGAGTTC------GAG---AC---------GGAGCATATGA---TT-GG-T--TT--TGCTGCC-TATACC--GGAGACCCAATTAGAAAATGGCTTTTAAAAACGGTC--GAA-AAT--------------ATGGCATATGGTGTCGGCTATATA-CATAG--AATTTGTA-----------GTCTGCTACTAC--TAGATCGATACCGT------AGATTGATTTGCGCAAAATCAGTTTCTTTGAAAGA--A---AGATTTGACGAAGT-TTTTCACTTACGAACTGCATGAG--------------CAAGTATGGTTGTCATTTATGTTTCTACAAACTGAAGACGGTATTCAAAATTGA
gi|5 : gcaATATTTCAACAATTTGAACA------------TTGAATATGAACTA----AATCA-------TAAGCTGTGACAATTAT---AGGAC--A-AAA-TATGA------ATCATAAATT-----T-CATTACAAAT-AAAAGTAGTACGCA-----ATGTTCAGGATGTTCA--AAGGA-A-C-TCG----TGT-AAGG-CCATGCTGTACTCTCCG-TTTAATGTTC--TTACCAAACTTTAATCTGTAACAA-GGAA--TATCATTGGCTGATTT-A-AATTTTACATTTTTGTAGCATATTGCGGCATTCTTTGTCTCAAGCTCAGATTTCAAATGGCGACTGATGTCAATG---GTTAGTGCAAGG-TAACGAATCAATAACCCT
gi|6 : aATTAAACAAGTTATTGAAAATT-ACATTGAAATAG-TAAATGAAATAGACTAAGTTACAACA--TAACACGGAAT--GGAAA-TGTGA------ATTATTATTTACA-TTACATATCAAAT-CAA-----CACACA-----ATGTTCATGATGTTGAGAAAAAT-ACC-CCA----TGTCAAGACCATGTTTTTACCTTCTG-TTTT-TGCTCGGGTACCAAACT------------AG-G-AA--TCCCATTGGTGGATTT-ATT-----------TT-TAGCTTATTACGTCATCTTCTGTCCCAAACCCATGTTTTGACTAATGACTGATGGCAAGGATAATTAAAGCAAGG-TACCGAATCAAGAACTCCTGACcaa
gi|7 : TCTTCACAAG---TCA---AGGGTTATTGATTCGCTACCTCGCACTAATCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---ATG--------G---------A------G--G--TT--TGCTGCT-TGTACC--GGAGACCCAATTAGAA------T----TAATCGGCCATAAA-AACGAAt
gi|7 : TTACCACGATAGATCGATACAGT------AGATTGA------AAAA-TAATTTTCTTTGAAGG-ACA---A---TCGATAAGTT-TTTAGAA-TATGAGCggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|8 : tcttcacaagtcaagggttattgattcgctacctcgcactaatccttgacatcagtcaccattcaaaacatgggctcgagatggaggtttgctgcttgtaccggagacccaattagaattaatcggccataaaaacgaaggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcataTTGACTATGAACT---TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATCACA-GTACATTACAAATAAAAAATAACACGCA-----ATGTTCATGATGTT-AGAAAAGGAA-A-CCA----TTT-A--C-CATTTTGGTATTTTTCGTTTTA-TGTTC--TTACC-ATTTTTCATCTGAACC---GTAA--TCTCACTGG-TGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCGT------------TTTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGGTTAACG-ATCAA-AACTCTTGACaatggat
gi|9 : TCTTCACAAG---TCATTGAGA-----TGATTCGTTACCTCGCACTAACCCTTGACACCAAT--------AAAACATGGGCTCTTAATGGAGCATAT---------G---------A---TC-GG-T--TT--TGCTCCC-TGTACC--GGAGATCCAATCAGAAAACAGATTTCATATTCGGCT--AAA-AGCGAGACTAAACACAAAAGGCTT--AACGTCGACAAGATAATGTAG--AATTTGTG-----------GCCAGTAACCAT--TAGACCGATACCGT------AGACTGAATTGCAAAAATTAATTTCCTTTAAt
Alignments
lowQualScore : 111111 5555555555555555555555555555555555555 1111 1 333333333333 111111 111111111 11111111111 2222 222222222 111 1111 333333 111 1111 1 11 444444444444444 66666666666666 111
lowQualScore : 555 555 0 5 88 222222 7777777777777777777777777777777777777 66 2 4 1 0000 1 5 3 3 66 4 66 44 9999 2 3 2 1 77 1 000000000000 66 444444 00 6 2 1 0 333333333 5 5 1 99999999999 1 44 3 555 3 1 0000 111111111 3 1 3 000 2222 5 222222 000 8 4 4 99999 1 7 999 8888 5 3333 3 0 77 88 0 77 5 0 333 1 555 1 99 1 444444444444444 6 1 77777777777777 8 1 0 22 1 444 1 8 0 8
lowQualScore : ... ... . . .. ...... ..................................... .. . . . .... . . . . .. . .. .. .... . . . . .. . ............ .. ...... .. . . . . ......... . . . ........... . .. . ... . . .... ......... . . . ... .... . ...... ... . . . ..... . . ... .... . .... . . .. .. . .. . . ... . ... . .. . ............... . . .............. . . . .. . ... . . . .
lowQualScore : 888 888 2 6 99 888888 0000000000000000000000000000000000000 11 0 4 0 1111 8 1 4 6 99 4 66 77 0000 7 0 4 7 99 7 111111111111 99 444444 55 5 5 7 7 444444444 0 0 7 55555555555 5 00 2 333 2 0 7777 888888888 7 5 5 000 3333 7 999999 222 2 1 0 11111 4 3 555 5555 0 6666 9 7 44 11 4 99 0 4 777 6 999 4 33 0 777777777777777 7 0 44444444444444 0 0 6 00 4 000 0 0 8 8
consensus : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAG-CCCA-AT-TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
Reference ( family-509 ) : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAG-CC---AT-TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
gi|1 : TCTTCACAAG---TCA---AGGGTTATTAATCCGTTACCTCGCACTAACCCTTGACATCAATCAGCATT-GAAACATGGGCTC------GAG---AT---------A---------A---TT-G--T--TT--TG-TGCCCTGTAGT--GAAGACCCAATCAGAT--CTGCATCTATAGTCGGCC--GAA-AACGAAAATAAATACAAGTGGTGC--AGCGTCAGAAACATGATGTTA--AATGTATT-----------ACCAGTTATCAC--AAGGCCAACACCGT------AGATTAATTTACAAAAATTAATTTTCTATGAGAGAACA---ATATCAAGCAAAGT-TTAATAA-TACGAGCTGCATGAAAACAACGGATTGCCCAGGTA-AATTGTGTATTGTGTTTTAACAAACTGATCACATTATCTAAAATTGTTTATGTACTATTTAAATCA-------TCAGTTATCGCATTTAA---AGAAC--TAATA-TGTGA------ATTAATAATTACATGTACGTTTCAAAT-GAAAATAACACATACTATGATGTTCGTGATATTGAGAAAAAG-A-C-TCA----CGC-AAGA-TACTTTTGTACTATCCA-ATTG-TGCTC--TTACTAAAATATAATCTGAATCAA-A-AAAGTCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTGCGTCATCCCCCGTCTCGAGAGC---ATATTCGAACGGTGACTGATGTTAAGG---GTTAGTGCAAGG-TAACGAATTAATAACTTTTTAC
gi|10 : CACTCATGGCGC--GGCGTCGGCATCATG-TGTAATTAATTTTTTTTTTTTTTTTTGCCAGTTAGCAC--TAGGCCAGTACCGT------AGATTAAT--GTGAAAATTCATTTTCTTTGAGGGAACAATTATATTAAACGAATT-TTTAGAA-TACGGGCCGC-TGAATACGACGAA-CGTCC
gi|11 : AA---AGGAC--AAAAACTCTGA------ATTACTAATTACG------TTCCAATT-AGAAATAACATACA-----ATGTTCATGATGTTGAGAAAAAG-ATC-CCG----CGT-AAAACCATGTGTTCATTTTCTG-------------TTACCAAATTTGCATCTGAAACGA-G-GAT-TCTCATTGGCTGATTC-A-AT----------TT-TAGCGT
gi|12 : TTTTCACAAC---TCA---AGGGTTATTAATTCGTTACTTTGCATTATCCCTTGTCATCAGTCACCATTCAAAACATGTGCTT------AAG---ACTGAGCATATG---------A---TTGG--T--GT--TGCAATA-TGTAGCTTGGAG--CCAATCATACGACAGCTTTCATAATCGAAC--GAA-AAGGA
gi|13 : a-AATGAAAACAAACACACGTGGTGC--GGCATCAGAAACATACTGT-------------------------TAGTTACCTC--AAATCCAACACCATTATGATACATTAATTTGAAAATATTCATTTCCTTTGAGGGAACA---ATATCAAACGAAGT-TTTAGAA-TA
gi|14 : AAAGGATAGGCTC------GAGG--AT---------G---------A---TT-GGTT--TT--TGC-GAC-AGAAGC--GGAGACCCAATCAGAAAACCGCACCTA-AACCGGCC--AAA-AACGAAAA-AAA
gi|15 : ccttggaaacatcaagatcgatagactAAATAGCACGCA-----ATGTTAATGATGTTGTTACAGGA-A-C-CCA----CGT-ATGA-TATTTTTTTACTTTCCG-TTTG-TTCTC--TTACCAAACTTGCATCTGAAACAA-G-AAG-TCTCATTG
gi|16 : TTCACAAGACGTCA---AGGATTATTGATTCGTTACCTCACATTAACCTTTGACATC-GTCA---TT------ATGGGCTC------GAG---AT---------G---------A---TT-G--G--TT--TTCGGCC-TGTAGC--GGAAACCCAATCAGA
gi|17 : TATTAATTACG-ATAC-----AAAT-ACAAAGTGCACGCA-----ATGTTCACAATGTTGAGAAAAGG-A-CTCCA----C
gi|18 : GAAATGTTTAGAA-TGCGAACCGCACGAAAACGATGGACTGTCCAAGTATGTTTGTCCATTGTGTTTTAACAActtatttatgatct
gi|19 : caAAAT-AAAAATAGCACGCA-----GTGTTCATTATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-C
gi|2 : aattaaattatcaaTCTTCACAAG---T-----------------TCGTTATCCTGAACTGACCCTTGACATCAGTTAACAT------CATTGG----------------------------------------------T--AT--TGCTGCT-TGCA----------CCAATCAGAAAACGGCTTTTATAGTCGGTC--TAATAACGAAACTAAACACGCATGGCGC--GGTGTCGGTGACATGGTGTAG--AATTTATG-----------GCCAGCTACTAC--TAGACCGATACCGT------AGAATAATTTACGAAAATTCAATTTCTTTAAGGAAA-A---A-GTT-GACGAAGT-TTTAGAG-TACAAGCCGCATAAAAACGACGGATTGTCCACATAT-GTTGTTGATTATGTTTCAACTAATTGAACACGTTA-TCTATATTGACTATGAAC----TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATTACA-GTACATTACAAAT-AAAAATAACACGCA-----ATGTTCATGATGTTGAGAAAAGGAA-A-CCATTTTTTT-A--C-CA-TTTTGTATTTTTCG-TTTA-TGTTC--TTACC--ATTTTCATCTGAAACCATG-AA--TCTCACTGGCTGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCG--------------T-TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGG-TAACGAATCAAAAACTCTTc
gi|20 : ---TCA---AGGGTTATTGATTCGTTACCTCGCAC
gi|20 : AAG---TCA---AGGTTTATTGATTCGTTACCTCGCACTagtgcgaggtaacgaatcaataaaccttgactt
gi|21 : tcaagggttattgattcgttacctcgcac-GTACGTTTCAAAT-AACAATAACAAGCA-----ATGTTCATGATGTTGA-AAAAGG-A-A-CCA----CG
gi|22 : CTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTTGCA
gi|23 : AG---TCA---AGGGTTATTGATTCGTTACCTCGTAC
gi|3 : TCTTCACAAG---TCA---AGGGTTGTTGATTCGTT-------------CCTTGACAGCAGTCACCATTCAGAACATGGACTC------GAG---AC---------G---------GAACTT-G--TGATTGGTATTGCT-TG-----------CCCAATGAGAAAACGCCTTTTAAAATCGGCC--GAA-AATGAAGCTAAACACGCATGAT------CAT-AGCGA---GGTGTAG--AACTTGTG-----------ACTAGTTACCAC--TAAATTAACATCGT------AGATTGATTCGCGGAAA---AT-------AAAGGTACA---ATG--AGACAAAGT-TTCAGAA-TACGAGCCGCGTGAA--------------TAAGTATGGTTGTCGATTATGTTTCTACAAATTGAACACAATATTCAAAATTGACTAT----CA--TAAGTC--------TAGG------CAAATAA---AGGGCCAAAAAA-AGTCA------ATTATTAATTACG-ATA-----CAAAT-CAAAATAGCAGGCA--------------ATGTTGAGAAAAAG-a
gi|4 : caTCATCACAAG---TCA---AGAGTGATTGATTGGTT-------------CCTTGACATCAACCACCATTCAAAACATGAGTTC------GAG---AC---------GGAGCATATGA---TT-GG-T--TT--TGCTGCC-TATACC--GGAGACCCAATTAGAAAATGGCTTTTAAAAACGGTC--GAA-AAT--------------ATGGCATATGGTGTCGGCTATATA-CATAG--AATTTGTA-----------GTCTGCTACTAC--TAGATCGATACCGT------AGATTGATTTGCGCAAAATCAGTTTCTTTGAAAGA--A---AGATTTGACGAAGT-TTTTCACTTACGAACTGCATGAG--------------CAAGTATGGTTGTCATTTATGTTTCTACAAACTGAAGACGGTATTCAAAATTGA
gi|5 : gcaATATTTCAACAATTTGAACA------------TTGAATATGAACTA----AATCA-------TAAGCTGTGACAATTAT---AGGAC--A-AAA-TATGA------ATCATAAATT-----T-CATTACAAAT-AAAAGTAGTACGCA-----ATGTTCAGGATGTTCA--AAGGA-A-C-TCG----TGT-AAGG-CCATGCTGTACTCTCCG-TTTAATGTTC--TTACCAAACTTTAATCTGTAACAA-GGAA--TATCATTGGCTGATTT-A-AATTTTACATTTTTGTAGCATATTGCGGCATTCTTTGTCTCAAG-CTCAGAT-TTCAAATGGCGACTGATGTCAATG---GTTAGTGCAAGG-TAACGAATCAATAACCCT
gi|6 : aATTAAACAAGTTATTGAAAATT-ACATTGAAATAG-TAAATGAAATAGACTAAGTTACAACA--TAACACGGAAT--GGAAA-TGTGA------ATTATTATTTACA-TTACATATCAAAT-CAA-----CACACA-----ATGTTCATGATGTTGAGAAAAAT-ACC-CCA----TGTCAAGACCATGTTTTTACCTTCTG-TTTT-TGCTCGGGTACCAAACT------------AG-G-AA--TCCCATTGGTGGATTT-ATT-----------TT-TAGCTTATTACGTCATCTTCTGTCCCAAA-CCCATGT-TTTGACTAATGACTGATGGCAAGGATAATTAAAGCAAGG-TACCGAATCAAGAACTCCTGACcaa
gi|7 : TCTTCACAAG---TCA---AGGGTTATTGATTCGCTACCTCGCACTAATCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---ATG--------G---------A------G--G--TT--TGCTGCT-TGTACC--GGAGACCCAATTAGAA------T----TAATCGGCCATAAA-AACGAAt
gi|7 : TTACCACGATAGATCGATACAGT------AGATTGA------AAAA-TAATTTTCTTTGAAGG-ACA---A---TCGATAAGTT-TTTAGAA-TATGAGCggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|8 : tcttcacaagtcaagggttattgattcgctacctcgcactaatccttgacatcagtcaccattcaaaacatgggctcgagatggaggtttgctgcttgtaccggagacccaattagaattaatcggccataaaaacgaaggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcataTTGACTATGAACT---TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTATTAATCACA-GTACATTACAAATAAAAAATAACACGCA-----ATGTTCATGATGTT-AGAAAAGGAA-A-CCA----TTT-A--C-CATTTTGGTATTTTTCGTTTTA-TGTTC--TTACC-ATTTTTCATCTGAACC---GTAA--TCTCACTGG-TGATTTAA-A-----------TT-TAGCGTACTACGTCATACTCCGT-------------T-TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGGTTAACG-ATCAA-AACTCTTGACaatggat
gi|9 : TCTTCACAAG---TCATTGAGA-----TGATTCGTTACCTCGCACTAACCCTTGACACCAAT--------AAAACATGGGCTCTTAATGGAGCATAT---------G---------A---TC-GG-T--TT--TGCTCCC-TGTACC--GGAGATCCAATCAGAAAACAGATTTCATATTCGGCT--AAA-AGCGAGACTAAACACAAAAGGCTT--AACGTCGACAAGATAATGTAG--AATTTGTG-----------GCCAGTAACCAT--TAGACCGATACCGT------AGACTGAATTGCAAAAATTAATTTCCTTTAAt
blockSeqs : ACG TTG C TC TTAATG ACTGAGCATATGATTGGT GG A . T GCTT A G A T AT T AC TC ATAT A C C A TT T TTTTTTTTTTTT GA TATGAT T C A ATTATATTA G T A AACGATGGACT T TG C CGT T C TAG GAAATAGAC C A A CAC CAAA C GTTACT GA A C A . G A TC TTTT C AAAC T TT AA GG A TGC A CAT G T C AAATTTTACATTT G A TCTCAAGCTCAGA . C AA A ATA T T A
blockSeqs : . . A TC . ACGGAGCATATGATTGGT . G . A GC A A C T . . CT AC GC A C G A . A G . . T C A ATATCA . . A AACGACGGATT T TG G CAA T C CA AA C G A . AA . GTTACT AG G A . . T A CT . . AGAC T T G . A TGC A GA T G C AAT . T TCCCAAACCCATG . G TC T . G . T
blockSeqs : . . C TC . ACGGAACTTGTGA . T . T GC A A G A . . CT GC GC G C G A . G G . . T C A AGATTT . . G TACGACGAAC T TG G CGG T C TA CA T A A . GG . . GA A T . . G . CC . . TGA A T A . A TTC A AA . . C AAA . C T . A GC G . A . G
blockSeqs : . . C TC . CATATGATCGGT . T . C CC A A G A . . CT GC GC G T A A . G A . . A C T AGTT . . A . . T A AGT . G T AA C A A . GG . . AT A A . . G . C . . AGA T T T . A TTA A AA . . T ATT . A . . C AA A . T . .
blockSeqs : . . C T . GATGATTGGTT . T . T CC A A G T . . A AA TT T G . A . G G . . T A A ATGA . . . . . . . . . C . . . . GG . . AG A T . . G . C . . AGG T T A . . TTC C AG . . . AAA .
blockSeqs : . . . . . ATGATTGG . T . T CC . A A T . . . . . A . . . . . . . . . A . ATC . . . A . . G . A . . G . A . . C . . . . . . . . . .
blockSeqs : . . . . . ATGGAGG . T . T . . . . . . . . . . . . . . . . . . G . A . . C
blockSeqs : . . . T . . . . . . . . . . . G . C .
blockSeqs : . . . . . . A .
blockSeqs : . . . . .
blockSeqs : . .
blockSeqCons : TC AGACTATGATTGGT*********************** ACGACGGAC** TG TA** AG* ***** ** AAN************ T*************
originalCons : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAG---AC---------G---------A---TT-G--T--TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAAACGACGGATTGTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACG-GTACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTT-A-A-----------TT-TAGCGTATTACGTCATNCTCCGTCTCGAG-CCCA-AT-TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
finalCons : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC------GAGAGACTATGATTGGT-----------------------TT--TGCTGCC-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACA---ATATTAGACGAAGT-TTTAGAA-TACGAGCCGCATGAAACGACGGAC--GTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTATTAATTACAG-TACGTTNCAAAT-AAAAATAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCG-TTTA-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTTAAN------------TT-TAGCGTATTACGTCATNCTCCGT-------------T-TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 77777777777 1111 1 333333333333 111111 22222222 4444444444444 2222 222222222 111 1111 111111 111111 1111111 111 1111 111 1 11 33333333333 111111111111111111111111 111
lowQualScore : 555 555 0 777 8 66 66 77777777777 1 0 9999 1 0000 1 5 3 3 66 4 66 44 9999 2 3 2 1 77 1 000000000000 66 444444 00 6 2 1 0 22222222 5 5 1 6 6 2222222222222 1 44 3 555 3 1 0000 111111111 3 1 3 000 2222 5 666666 444444 0000000 4 3 99999 1 3 333 8888 5 3333 3 0 1 333 0 77 0 333 1 555 1 99 1 7 11111111111 1 444444444444444444444444 6 1 0 22 1 444 1 8 0 8
lowQualScore : ... ... . ... . .. .. ........... . . .... . .... . . . . .. . .. .. .... . . . . .. . ............ .. ...... .. . . . . ........ . . . . . ............. . .. . ... . . .... ......... . . . ... .... . ...... ...... ....... . . ..... . . ... .... . .... . . . ... . .. . ... . ... . .. . . ........... . ........................ . . . .. . ... . . . .
lowQualScore : 888 888 2 111 8 11 11 77777777777 1 1 7777 0 1111 8 1 4 6 99 4 66 77 0000 7 0 4 7 99 7 111111111111 99 444444 55 5 5 7 7 44444444 0 0 7 7 7 0000000000000 5 00 2 333 2 0 7777 888888888 7 5 5 000 3333 7 444444 444444 2222222 1 6 11111 4 6 555 5555 0 6666 9 7 7 999 4 99 4 777 6 999 4 33 0 5 77777777777 0 000000000000000000000000 4 0 6 00 4 000 0 0 8 8
consensus : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC--GA--GA---G--C-T-ATGATTGGTTTTGCTGC--C-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACAAT---ATTAGACGAAGT-TTTAGAA-TACGAGCCGCAT-G-AA-A-CGACGGA-C-GTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTA------TTAATTACG-GTACGTTNCAAATAAAAA-TAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCGTTT-A-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTTAAATT-----------TAGCGTATTACGTCATNCTCCGTC-CAA-C-CA--T-----------TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
Reference ( family-509 ) : TCTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTCGCACTAACCCTTGACATCAGTCACCATTCAAAACATGGGCTC--GA--GA---GA-C-T-ATGATTGGTTTTGCTGC--C-TGTAGC--GGAGACCCAATCAGAAAACGGCTTTTATAATCGGCC--GAA-AACGAAANTAAACACGCATGGCGC--GGCGTCGGCGACATGGTGTAG--AATTTGTG-----------GCCAGTTACCAC--TAGACCGATACCGT------AGATTGATTTGCGAAAATTCATTTTCTTTGAGGGAACAAT---ATTAGACGAAGT-TTTAGAA-TACGAGCCGCAT-G-AA-A-CGACGGA-C-GTCCAAGTATGGTTGTCGATTATGTTTCAACAAATTGAACACGTTATTCAAAATTGACTATGAACTA--TAAATNA-------TAAGCTATAACAATTAA---AGGAC--GGAAA-TGTGA------ATTA------TTAATTACA-GTACGTTNCAAATAAAAA-TAGCACGCA-----ATGTTCATGATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-CATTTTTGTACTTTCCGTTT-A-TGCTC--TTACCAAACTTTCATCTGAAACAA-G-AA--TCTCATTGGCTGATTTAANTT-----------TAGCGTATTACGTCATNCTCCGT------------T-----------TTCGAATGNCGACTGATGNNAAGG---GTTANTGCGAGG-TAACGAATCAANAACTCTTGAC
gi|1 : TCTTCACAAG---TCA---AGGGTTATTAATCCGTTACCTCGCACTAACCCTTGACATCAATCAGCATT-GAAACATGGGCTC--GA--GA-----------TAATTG-TTTTG-TGC--CCTGTAGT--GAAGACCCAATCAGAT--CTGCATCTATAGTCGGCC--GAA-AACGAAAATAAATACAAGTGGTGC--AGCGTCAGAAACATGATGTTA--AATGTATT-----------ACCAGTTATCAC--AAGGCCAACACCGT------AGATTAATTTACAAAAATTAATTTTCTATGAGAGAACAAT---ATCAAGCAAAGT-TTAATAA-TACGAGCTGCAT-GAAA-A-CAACGGATT-GCCCAGGTA-AATTGTGTATTGTGTTTTAACAAACTGATCACATTATCTAAAATTGTTTATGTACTATTTAAATCA-------TCAGTTATCGCATTTAA---AGAAC--TAATA-TGTGA------ATTA------ATAATTACATGTACGTTTCAAATGAAAA-TAACACATACTATGATGTTCGTGATATTGAGAAAAAG-A-C-TCA----CGC-AAGA-TACTTTTGTACTATCCAATT-G-TGCTC--TTACTAAAATATAATCTGAATCAA-A-AAAGTCTCATTGGCTGATTTAA-TT-----------TAGCGTATTGCGTCATCCCCCGT------------CTCGAGAGCATATTCGAACGGTGACTGATGTTAAGG---GTTAGTGCAAGG-TAACGAATTAATAACTTTTTAC
gi|10 : CACTCATGGCGC--GGCGTCGGCATCATG-TGTAATTAATTTTTTTTTTTTTTTTTGCCAGTTAGCAC--TAGGCCAGTACCGT------AGATTAAT--GTGAAAATTCATTTTCTTTGAGGGAACAATTATATTAAACGAATT-TTTAGAA-TACGGGCCGC-T-G-AATA-CGACGAA-C-GTCC
gi|11 : AA---AGGAC--AAAAACTCTGA------ATTA------CTAATTAC------GTTCCAATTAGAAA-TAACATACA-----ATGTTCATGATGTTGAGAAAAAG-ATC-CCG----CGT-AAAACCATGTGTTCATTTTCTG-------------TTACCAAATTTGCATCTGAAACGA-G-GAT-TCTCATTGGCTGATTCAATTT-----------TAGCGT
gi|12 : TTTTCACAAC---TCA---AGGGTTATTAATTCGTTACTTTGCATTATCCCTTGTCATCAGTCACCATTCAAAACATGTGCTT--AA--GACT-GAGCAT-ATGATTGGTGTTGCAAT--A-TGTAGCTTGGAG--CCAATCATACGACAGCTTTCATAATCGAAC--GAA-AAGGA
gi|13 : a-AATGAAAACAAACACACGTGGTGC--GGCATCAGAAACATACTGT-------------------------TAGTTACCTC--AAATCCAACACCATTATGATACATTAATTTGAAAATATTCATTTCCTTTGAGGGAACAAT---ATCAAACGAAGT-TTTAGAA-TA
gi|14 : AAAGGATAGGCTC--GA--GG----------ATGATTGGTTTT--TGCGAC-AGAAGC--GGAGACCCAATCAGAAAACCGCACCTA-AACCGGCC--AAA-AACGAAAA-AAA
gi|15 : ccttggaaacatcaagatcgatagactAAA-TAGCACGCA-----ATGTTAATGATGTTGTTACAGGA-A-C-CCA----CGT-ATGA-TATTTTTTTACTTTCCGTTT-G-TTCTC--TTACCAAACTTGCATCTGAAACAA-G-AAG-TCTCATTG
gi|16 : TTCACAAGACGTCA---AGGATTATTGATTCGTTACCTCACATTAACCTTTGACATC-GT---CATT------ATGGGCTC--GA--G-----------ATGATTGGTTTT-CGGC--C-TGTAGC--GGAAACCCAATCAGA
gi|17 : TA------TTAATTACG-ATAC-----AAATACAAA-GTGCACGCA-----ATGTTCACAATGTTGAGAAAAGG-A-CTCCA----C
gi|18 : GAAATGTTTAGAA-TGCGAACCGCAC-G-AA-AACGATGGA-CTGTCCAAGTATGTTTGTCCATTGTGTTTTAACAActtatttatgatct
gi|19 : caAAATAAAAA-TAGCACGCA-----GTGTTCATTATGTTGAGAAAAGG-A-C-CCA----CGT-AAGA-C
gi|2 : aattaaattatcaaTCTTCACAAG---T-----------------TCGTTATCCTGAACTGACCCTTGACATCAGTTA---------ACAT--------------------C------ATTGGTATTGCTGC--T-TGCA----------CCAATCAGAAAACGGCTTTTATAGTCGGTC--TAATAACGAAACTAAACACGCATGGCGC--GGTGTCGGTGACATGGTGTAG--AATTTATG-----------GCCAGCTACTAC--TAGACCGATACCGT------AGAATAATTTACGAAAATTCAATTTCTTTAAGGAAA-AA----GTT-GACGAAGT-TTTAGAG-TACAAGCCGCATAA-AA-A-CGACGGATT-GTCCACATAT-GTTGTTGATTATGTTTCAACTAATTGAACACGTTA-TCTATATTGACTATGAAC----TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGAGTTACTGTTA------TTAATTACA-GTACATTACAAATAAAAA-TAACACGCA-----ATGTTCATGATGTTGAGAAAAGGAA-A-CCATTTTTTT-A--C-CA-TTTTGTATTTTTCGTTT-A-TGTTC--TTACC--ATTTTCATCTGAAACCATG-AA--TCTCACTGGCTGATTTAAATT-----------TAGCGTACTACGTCATACTCCGT------------T-----------TT-GAATGCCGACTGCTGAAAAAG---GTTATTGCGAGG-TAACGAATCAAAAACTCTTc
gi|20 : ---TCA---AGGGTTATTGATTCGTTACCTCGCAC
gi|20 : AAG---TCA---AGGTTTATTGATTCGTTACCTCGCACTagtgcgaggtaacgaatcaataaaccttgactt
gi|21 : tcaagggttattgattcgttacctcgcac-GTACGTTTCAAATAACAA-TAACAAGCA-----ATGTTCATGATGTTGA-AAAAGG-A-A-CCA----CG
gi|22 : CTTCACAAG---TCA---AGGGTTATTGATTCGTTACCTTGCA
gi|23 : AG---TCA---AGGGTTATTGATTCGTTACCTCGTAC
gi|3 : TCTTCACAAG---TCA---AGGGTTGTTGATTCGTT-------------CCTTGACAGCAGTCACCATTCAGAACATGGACTC--GA--GACGGAA-C-TTGTGATTGGTATTGCT------TG-----------CCCAATGAGAAAACGCCTTTTAAAATCGGCC--GAA-AATGAAGCTAAACACGCATGAT------CAT-AGCGA---GGTGTAG--AACTTGTG-----------ACTAGTTACCAC--TAAATTAACATCGT------AGATTGATTCGCGGAAA---AT-------AAAGGTACAAT---G--AGACAAAGT-TTCAGAA-TACGAGCCGCGT-G-AA----------------TAAGTATGGTTGTCGATTATGTTTCTACAAATTGAACACAATATTCAAAATTGACTAT----CA--TAAGTC--------TAGG------CAAATAA---AGGGCCAAAAAA-AGTCA------ATTA------TTAATTACG-ATA-----CAAATCAAAA-TAGCAGGCA--------------ATGTTGAGAAAAAG-a
gi|4 : caTCATCACAAG---TCA---AGAGTGATTGATTGGTT-------------CCTTGACATCAACCACCATTCAAAACATGAGTTC--GA--GACG-GAGCAT-ATGATTGGTTTTGCTGC--C-TATACC--GGAGACCCAATTAGAAAATGGCTTTTAAAAACGGTC--GAA-AAT--------------ATGGCATATGGTGTCGGCTATATA-CATAG--AATTTGTA-----------GTCTGCTACTAC--TAGATCGATACCGT------AGATTGATTTGCGCAAAATCAGTTTCTTTGAAAGA--AAG---ATTTGACGAAGT-TTTTCACTTACGAACTGCAT-G-AG----------------CAAGTATGGTTGTCATTTATGTTTCTACAAACTGAAGACGGTATTCAAAATTGA
gi|5 : gcaATATTTCAACAATTTGAACA------------TTGAATATGAACTA----AATCA-------TAAGCTGTGACAATTAT---AGGAC--A-AAA-TATGA------ATCA------TAAATTTCA------TTACAAATAAAAG-TAGTACGCA-----ATGTTCAGGATGTTCA--AAGGA-A-C-TCG----TGT-AAGG-CCATGCTGTACTCTCCGTTT-AATGTTC--TTACCAAACTTTAATCTGTAACAA-GGAA--TATCATTGGCTGATTTAAATTTTACATTTTTGTAGCATATTGCGGCATTCTTTGTCTCAAGCTCAGAT-----------TTCAAATGGCGACTGATGTCAATG---GTTAGTGCAAGG-TAACGAATCAATAACCCT
gi|6 : aATTAAACAAGTTATTGAAAATT-ACATTGAAATAG-TAAATGAAATAGACTAAGTTACAACA--TAACACGGAAT--GGAAA-TGTGA------ATTA------TTATTTACA-TTACATATCAAATCAA------CACACA-----ATGTTCATGATGTTGAGAAAAAT-ACC-CCA----TGTCAAGACCATGTTTTTACCTTCTGTTT-T-TGCTCGGGTACCAAACT------------AG-G-AA--TCCCATTGGTGGATTTATTTT-----------TAGCTTATTACGTCATCTTCTGTCCCAAACCCATGT-----------TTTGACTAATGACTGATGGCAAGGATAATTAAAGCAAGG-TACCGAATCAAGAACTCCTGACcaa
gi|7 : TCTTCACAAG---TCA---AGGGTTATTGATTCGCTACCTCGCACTAATCCTTGACATCAGTCACCATTCAAAACATGGGCTC--GA--G-----------ATGG--AGGTTTGCTGC--T-TGTACC--GGAGACCCAATTAGAA------T----TAATCGGCCATAAA-AACGAAt
gi|7 : TTACCACGATAGATCGATACAGT------AGATTGA------AAAA-TAATTTTCTTTGAAGG-ACAA------TCGATAAGTT-TTTAGAA-TATGAGCggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcatattaccacgatagatcgatacagtagattgaaaaataattttctttgaaggacaatcgataagtttttagaatatgagcaatggat
gi|8 : tcttcacaagtcaagggttattgattcgctacctcgcactaatccttgacatcagtcaccattcaaaacatgggctcgagatggaggtttgctgcttgtaccggagacccaattagaattaatcggccataaaaacgaaggacccaattaagaaatcgtcgaaacgaagctgttaaaaggatgttagggaacatgcgaataatacttatgtaaccatcgggtgagcataTTGACTATGAACT---TAAATAA-------TAAGCTATAACAATTAA---CGGAC--GGAAA-TGTGA------GTTACTGTTATTAATCACA-GTACATTACAAATAAAAAATAACACGCA-----ATGTTCATGATGTT-AGAAAAGG-A-AACCA----TTT-AC---CATTTTGGTATTTTTCGTTTTA-TGTTC--TTACCAT-TTTTCATCTGAACC---GTAA--TCTCACTGG-TGATTTAAATT-----------TAGCGTACTACGTCATACTCCGT------------T-----------TTTGAATGCCGACTGCTGAAAAAG---GTTATTGCGAGGTTAACG-ATCAA-AACTCTTGACaatggat
gi|9 : TCTTCACAAG---TCATTGAGA-----TGATTCGTTACCTCGCACTAACCCTTGACACCAAT--------AAAACATGGGCTCTTAATGGA---GC-A-T-ATGATCGGTTTTGCTCC--C-TGTACC--GGAGATCCAATCAGAAAACAGATTTCATATTCGGCT--AAA-AGCGAGACTAAACACAAAAGGCTT--AACGTCGACAAGATAATGTAG--AATTTGTG-----------GCCAGTAACCAT--TAGACCGATACCGT------AGACTGAATTGCAAAAATTAATTTCCTTTAAt