lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 2222 22 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 222222 999999999999999999999999999999999999999999999999999 33333333333333333 2222222 22222 11 11 222 66666666666666666666666666666666666666 333333333 22222 3 66666666666666666666666666666666666 1111 111 1 333 33333333333333 44 22 11 333333 333333333333333333333333333333333333333333333333333333 11 55555555 111 1 66666666666666666 1 1111 11 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 44444444444444 11 33333333 1 11111 555555555 111 444444444444444444 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 444444444444 111 333333333 4444444444444444444444444 4444444444444 333333 4
lowQualScore : 0 8888 55 3 3 3 8 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 8 777777 555555555555555555555555555555555555555555555555555 11111111111111111 2 0 0000000 77777 6 11 11 333 99999999999999999999999999999999999999 6 6 6 111111111 5 00000 3 77777777777777777777777777777777777 6 4444 111 1 3 555 22222222222222 6 44 11 2 00 1 00 6 000000 6 888888888888888888888888888888888888888888888888888888 1 22 6 6 88888888 111 0 3 55555555555555555 6 6666 66 00 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 444 1 8 99 5 5 1 8 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 66666666666666 33 5 5 8 8 99999999 1 5 66666 888888888 444 666666666666666666 8 8888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 55 222222222222 333 666666666 0 0000000000000000000000000 5 888 1111111111111 666666 1 1 0
lowQualScore : . .... .. . . . . ............................................................................................................................................................................................................. . . ...... ................................................... ................. . . ....... ..... . .. .. ... ...................................... . . . ......... . ..... . ................................... . .... ... . . ... .............. . .. .. . .. . .. . ...... . ...................................................... . .. . . ........ ... . . ................. . .... .. .. . . ........................................................................................... . ... . . .. . . . . . ................................................................................... . .............. .. . . . . ........ . . ..... ......... ... .................. . .... ............................................................................................................................. .. ............ ... ......... . ......................... . ... ............. ...... . . .
lowQualScore : 3 3333 00 3 5 8 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 000000 666666666666666666666666666666666666666666666666666 00000000000000000 2 8 2222222 66666 0 00 00 000 44444444444444444444444444444444444444 7 7 6 222222222 6 00000 2 22222222222222222222222222222222222 7 2222 777 3 0 222 33333333333333 7 22 22 5 88 0 88 7 777777 7 000000000000000000000000000000000000000000000000000000 0 88 7 7 33333333 777 7 3 22222222222222222 0 2222 22 22 2 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 000 4 0 44 6 0 4 0 6 66666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 44444444444444 11 7 7 4 7 00000000 4 7 00000 444444444 000 666666666666666666 0 8888 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 77 777777777777 888 111111111 5 9999999999999999999999999 0 888 5555555555555 777777 9 9 0
consensus : TGTTCTCC--N-TATCAGTAAAA-CAAG-ACTACA-AACTATA--AGCTTTTTTAA--ACANCA---TGAAT----TCAAAAAAAATGAGCT-GCATTGCCCTAACTGCCTCTGACCT---TAANATGTC-CCTCA-CAACCTCAAGTGTGTTACA-ACCTAA--A-AGTTG-GCTCTGAA-GGAAC-ATG---GTGCAAAAAAAGGCAGACAAATATTACA-A-CCAGGGGGTTT---GCT-GAT-TCAACTTG-TCCTAAAGACCTTGACTTGTATTTGAA--TGCAAGT---AC-GAC--CA-GTT-CA-CC-ACA----ATGAAATTCT----AACGCTG-CACCTTGATTAT----GACCTT----GACAACATTG--CTA--ATGTTTTTCAAGATC----T-TGAACTAAAGTGTGCGGTTATCATGTTTA-GAAC-ATA-CAGAAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT--GCAGAATTTCTTTACCAAAGCTGATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAAT-TATT-ATTT-T----GAAACG-CAAT--------T-AGT--TTCAAA---------------GAAATTTGCT-AC-----CTTTGCGATGTGCAT-ATCAATAG-CGGC-CG---ACT---TTATT-GTCTATATAGGAGAA--TGTTT--CTTGCCTTTAG---AANTCG-CTCGGAATGTAT------------ATTGAAACA------CTGCTTCA-ACTA---TN--GGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAAT-NAAATTCT-C---AAA-GTA-TGACTTTCATCCC-AATATT---GG---AGAACGATATA--AT-C-CCC--AT---A-AG---GG---TGA--GACTTT---TAATTGTCA--GCAAATGA-CCACAACACC--TTA-NT----TAC-G-CAA-TTATTGATTT-CTCC-GTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTACGTA-----CCAC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA-TTTAGA---------AANNACCANTTTGCGACGAAGCGCAGTTAAAC-AACACGGGTTAANAANATGAC-A--CACAGGTCACAGGTT--AN-----TATACTNNT---TTAC--TA-NT-A--TTACGG-ATTT--TTTT--T--C------GCCAC---TT---A-----GATTTTTTTTTCG-CCCACT----------------T-TTG-A---ATTTTTTTCNCGCC-A-TT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
Reference ( gi|3 ) : TGTTCTCC--T-TATCAGTAAA--CAAG-ATTACA-AACTGTA--AGCCTTTTTAA--A--ACA---T---T----TCAAAAA---TTAGCTAACAT-GCCCTAAC-GCCT-TCACCT---TAAC-TGTC-CCTCACCAACCTCAAATGTGT-ACAGACCTAA--A-AGTTG-ACTCTGAA-GGAAC-ATG---GT-------AAGTCAGACAAAT--TACA-A-CTAGGG---T----GCT-C-T-TCAACTTG-TCT--AAGCCCTTGACCTGT---TGA---TGCAAGT---A--GAC--CA-GTTTCA-CC-A-A----ATAAAAT-CT----AACACTG-CCCTTTGAT-AT----GACCTT----GACAACACTG--CTA--ATG-TTTTCAAGG-C----T-T--------GTG-GCA---ATCA-GCTAT-GAAC-ATA-CAGAAACTGG------GGCTTGTG-----GGAGAGCAAAGTGATTTT-TGCAGAACTCCTTCACCAAAG----TCAGTTAATTTA-C----AG---GTTTACGTTTCCCCATTTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTAACCATTGTAGAACTATAGAAT-TATT-ATTT-T----GAAACG-CAAT--------T-AGC--TTCAAA---------------G-----------------CTTTGTGATGTGCAT-ATCAATAG-CG---TG---ACT---TCATT-GTCTATA-----GCA--T-TTT--CTT-CCTTTAA---AAATCG-CTTGGA-TGTAT------------ATTGAAA-A------GTG-TTCA-ACTA---TT--G-----AGTCTAAA--GGAGTAATT----AATTGACAAC-C---TTCT-C---AAA-GTA-TGACTTTCATCCC-AATAT----GG---AGAACGAT-TA--AT-C-C----AT---A-AG---GG---TGC--GACTTT---TCATTGTCATGGTAAATGAACCACAACACC--TTA-CT----TAT-G-CAA-TTATTGAT---CTTG-GTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTA--TA-----CCAC---TAGTACC-GTTACGCTGAGATTCTTGTGTGCACT-GAAGCGA-TT-AGA---------AACAACGAAGTTGC-ACGCAG-GCA--TGGCCTAACA---GTTAACAACCTGAC-A--CACAGATCA-----T--AT-----TGTACTGGT---ATAC--TA-GT-A--TT-CAG-ATTT--TTTT--C--C------GCCAC---TT---A-----GATTTTTTTTTCG-CACACT----------------T-TTG-A---ATTTTTTTTCAGCC-A-T--G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGAT-TATT
gi|15 : TGTTCTCC--T-TATCAGTAAA--CAAG-ATT
gi|1 : cactgttgaaaccaaaaattctttttcgcacacttttcgagcgacgaaaaaccacaaaaccctatttttcagttatatccatgtaatgctatagttgtggaaaagaataaaaagtttcaagtaaatttgaaaagtttaaataaattacaaataaattaTCCCC--T-GATCAGTAAA--AAAG-ACTACATAACTATAGAATCGTTATTAATTA--TCA---G---TCTGGTCAAAAA---T-AGT--ACAT-GCC-TAACTGCCCCTGACCA---TTAC-TGTCTCCTCAC-AAC-TCAA-TGTGT-ACAGACCTAA--A-AAGTG-GCTCTGAA--GAACGATG---CTGCTAAAAAAGGCAGACCAAA--TACA-ACCCAGGG---TTGGCGCT-A-T-TCAACTTG-TCT--AAG-ACTTGACTGGT---TGGAATTGC-AGT---ATGGTT--CACGTGGCA-CC-ACAATGCATAAAGT-ATGGGAAATGCTGACACATTGAC-ATGGAAGACCTTCTTCGACAACATTGTTCTATTATG--ATTCAAGA-T----T-T--------
gi|5 : ctcccactgaccaaatttcttttatcggggactactttattcgttggcaagcggcgaaaagacctggcaccgtattttatttcattgtcgtaggataccatggatgaataatgccatatttgtggaaagaaataaagtatttgaaaaagttttataaatgggtacaaaaaatatgttacttctataatttctatatggtctggaagaaagagcgtcttgcacaaaagcctgagatccaaaagacctacttaaaactgacaaaatatgagcatcTCTCCACG-TATCAGTAAAAACAAGGACTACA-AACTATA---GCTTTTTTAA--ACAGCA---TGAAT----TTAAAAAAAATGAGC--GCATTGCCCTAACTGCCTCTGACCT---TAAAATGT---------AGCCT---GTGTATTACA-ACCTAA--A-GG----------------AC-ATA---GTGCAAAAAAAG-CAC-CAAATATTAAA-A-CCAGAGGGTT----GCT-GAT-TCAACTTG-TCCTAAAGACTTTGAC-TGTATTTGAA--TGCAGAT---AC-GAC---A-GTT-CA-CC-ACAC---ATGAAATTCT----AAC---G-CACCTTGATTAT----GACCT------ACAACATTG--CTA--ATGTTTTTCAAGATC----T-TGAACTAAAGTGTGCGGTTATCATGTTTA-GAAC-ATA-CAGAAcgagataacttgacgagtggtgtgcataactaagaagtgtcaacttactgaaaacttcaaaagaaatggactgtggagagcaaggtattttgtttagaatttcttacaagtcagtgtttgcaggttacgttgcccattttacacatgaaataccaaaaaggcaggaatagtgtacattgtagaataaaggaatcattattttgaaacgtaatgagcttcaaagaaatttgcgtaactgctttgcgaagtgcatgatcaatagcaagctgacttcattgtctatagaaggttatcgcttccttttaggcaaacttctgcatatatcgagatggtgaaattgaagacggcatatgtccatactaatacaattctaattggttattaaattgaccaagttctccaaagtatgactcatcccaatgtggagtgattaatctcattaagagggaggacttatagcgtgtgaattgttcatacaccctttaatacgccaatgattgttttctaaaaacccaaatgacctgagggatactaatctacactagtaccagtgacctgagatctgtgtgcactggaagcggcagagcttgcgatagtaatgatgtgcaccaagtttctagcgtcaacagatgagggagagcataaactcattggtgacaaaccacagtcacaggtttatttctatgttactgtttatatacgagttttttttcgccactgaagatttttcgccactttgatgtaatttttttcgccattgcgcaaatggcgactacagctcgagccctagt
gi|4 : atgagcgaTCTCCACG-TATCAGTAAAAACAAGGACTACA-AACTATA---GCTTTTTTAA--ACAGCA---TGAAT----TTAAAAAAAATGAGC--GCATTGCCCTAACTGCCTCTGACCT---TAAAATGT---------AGCCT---GTGTATTACA-ACCTAA--A-GG----------------AC-ATA---GTGCAAAAAAAG-CAC-CAAATATTAAA-A-CCAGAGGGTT----GCT-GAT-TCAACTTG-TCCTAAAGACTTTGAC-TGTATTTGAA--TGCAGAT---AC-GAC---A-GTT-CA-CC-ACAC---ATGAAATTCT----AAC---G-CACCTTGATTAT----GACCT------ACAACATTG--CTA--ATGTTTTTCAAGATC----T-TGAACTAAAGTGTGCGGTTATCATGTTTA-GAAC-ATA-CAGAActtacaacaagaatgcattgcaatgcaaagccagggcttgtgagagagcaagtgatttgcagatcttaccaaagctgatcagtatttacagatttaagttcccatgttgacacatcaataccaaaagagaatggtgtacattgtagaatatataattattatttgaaacgcaatgatttgaatgagtctttcaaagaaatttgctaactgctttgcgattatatatcaatagcggccgactttatttgtctatataggaaaatttgcttgcctttagaactcgcttggaatgtatattgaaacactgcttcaactatagggtctagtctaaattggtgtaattttttaatgaataatcaaattctcataatttgactttcaacccatattggagacatataatccccataagggcgatgagacttttaattcagcaatgaccacaaaattaatttattgcaatattgtttctgtaaacccaaatgacctgaggggttacttaaaagtaa
gi|7 : atgagcgaTCACC--A-TATCAATAAA--CAAG-ACTGCA-AACT-----AGTCAT-------A--CCAGTTT---T----CCAAAAA---TGAGATA-CAT-GCCCTAACTGCCTCTGACCTCACTAGG-TGAC-CTTG--CAAC-TCATATGCGT-ACATA--TAATCACAGTTATGTTCTGGATGGAGC-ATG---ATGCAGA--AAGGCAGGCAAAT--TACAGA-CAAAGG---TT---GTT-A-T-TCAACTTG-TCT--ACAACCTTGAC-TGT---TGA------AAGC---A--GATGTTA-GTT-CA-CCTC-A----ATAAAAT-CT----AACTCTG-ATCTT-GAT-AT----GACATT----GTTAACATTG--TTA--TTG-GTTTCAAAG-CATCATAT--------GTGTGCA---AACA---TACAGAACTGTAACAAGAAATGT------TGTTGGTA-----GGAGAGCAA-GTGGTTAT--GCAGGATT---TTAC-AAAA----TCAGT--ATCTGTC----AGTAAGTTTACGTTTCCCCATTTC-G-ACACATCA---------------------GTG---------TAGAA----AGAAT-TATT-TTCTAT----GGAACG-CAAT--------G-AGT--TTCAAAAAATGTGTTTATTT-G-----------------CTCTGTGATGTGCAT-ATCAATAA-CG----GTCTACT---TTATT-GTTTATA-----GAA--TGTTTG-TTT-CCTTTAA---AActtacaacaagaatgcattgcaatgcaaagccagggcttgtgagagagcaagtgatttgcagatcttaccaaagctgatcagtatttacagatttaagttcccatgttgacacatcaataccaaaagagaatggtgtacattgtagaatatataattattatttgaaacgcaatgatttgaatgagtctttcaaagaaatttgctaactgctttgcgattatatatcaatagcggccgactttatttgtctatataggaaaatttgcttgcctttagaactcgcttggaatgtatattgaaacactgcttcaactatagggtctagtctaaattggtgtaattttttaatgaataatcaaattctcataatttgactttcaacccatattggagacatataatccccataagggcgatgagacttttaattcagcaatgaccacaaaattaatttattgcaatattgtttctgtaaacccaaatgacctgaggggttacttaaaagtaa
gi|8 : gcatcCCCC--TATACCATTAAAA-CAAG-ACT-CA-AACTTCA--CGC-TTTTTAA--ACCACA---T---TTG--TAAAAAA---TGAGCT-ACATAGT----AT-G-------CCT---TAAC-TGT--CCTCA-CAA-CTCAAATG------------------AGTTG-GCTCTGAA-GAGAC-ATGCCTGCAA-----AAGGCAGAACAAT--TACA-ATCCAGCG---C----GTTGC-TATAAACTTGTTCC--AAG-GCTCGACTCGT---GTA---TAGAACTGCGA--AAT--CA-GTTTCAGCC-A-C----ACAA
gi|20 : acaaataatgttcttgctataccccacaatctctatatttctcaagaaagatcttgtaaacttagctcgccctgaggatcaaaaacctacctctaagctgacaaaatatgacatctgaAGT---A--GAC---A-GTT-CA-CC-ACA----ATGAAAT-AT----AATGCTG-ACCTTTGAT-AA----GACCTT----GACAACATTG--CTA--ATG-TATTCAAGG-C----ggagggttaaaaaataccgctgacagctattgagtatagaa
gi|14 : cAAC-ATA-CAGAAACTTGTAAAAAGAAATGTGTTGGTGGTGAGCAA-GTGGCTAT--GCAGGATT--TTTACCAAAA----TCAGT--ATCTG-CCAGTAA---GTTTACGATTCCCCATTTTGACACACATC--AT------T--GTAG-AA-----TAATTATT-T----CTATGGAACGCATTGAGTT-TCAAAGAAATG-TGTT--------T-A-T--TTC------------------------------------CTCTGTGATATGCAT-ATCAATAA-CGGT-TT---ACT---TTATT-GTatctgaactaagtgtgtgg
gi|5 : -ATG-CA-AAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT---GCAGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAAT-TATT-ATTT------GAAACG-CAATGATTTGAATGAGTCTTTCAAA---------------GAAATTTGCTAACTG---CTTTGCGAT-TATAT-ATCAATAG-CGGC-CG---ACT---TTATTTGTCTATATAGGAAAA--T-TTG--CTTGCCTTTAG---AACTCG-CTTGGAATGTAT------------ATTGAAACA------CTGCTTCA-ACTA---TA--GGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAAT-CAAATTCT-C---ATA-ATT-TGACTTTCAACCC-A-TATT---GG---AGA-C-ATATA--AT-C-CCC--AT---A-AG---GGCGATGA--GACTTT---TAATT--CA--GCAA-TGA-CCACAAAA----TTAATT----TATTG-CAA-T-ATTG-T---TTCT-GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAA
gi|4 : atgagcgatctccacgtatcagtaaaaacaaggactacaaactatagcttttttaaacagcatgaatttaaaaaaaatgagcgcattgccctaactgcctctgaccttaaaatgtagcctgtgtattacaacctaaaggacatagtgcaaaaaaagcaccaaatattaaaaccagagggttgctgattcaacttgtcctaaagactttgactgtatttgaatgcagatacgacagttcaccacacatgaaattctaacgcaccttgattatgacctacaacattgctaatgtttttcaagatcttgaactaaagtgtgcggttatcatgtttagaacatacagaacttacaacaagaatgcattgca-ATG-CA-AAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT---GCAGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAAT-TATT-ATTT------GAAACG-CAATGATTTGAATGAGTCTTTCAAA---------------GAAATTTGCTAACTG---CTTTGCGAT-TATAT-ATCAATAG-CGGC-CG---ACT---TTATTTGTCTATATAGGAAAA--T-TTG--CTTGCCTTTAG---AACTCG-CTTGGAATGTAT------------ATTGAAACA------CTGCTTCA-ACTA---TA--GGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAAT-CAAATTCT-C---ATA-ATT-TGACTTTCAACCC-A-TATT---GG---AGA-C-ATATA--AT-C-CCC--AT---A-AG---GGCGATGA--GACTTT---TAATT--CA--GCAA-TGA-CCACAAAA----TTAATT----TATTG-CAA-T-ATTG-T---TTCT-GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAaagtaa
gi|1 : atgagcgatctccacgtatcagtaaaaacaaggactacaaactatagcttttttaaacagcatgaatttaaaaaaaatgagcgcattgccctaactgcctctgaccttaaaatgtagcctgtgtattacaacctaaaggacatagtgcaaaaaaagcaccaaatattaaaaccagagggttgctgattcaacttgtcctaaagactttgactgtatttgaatgcagatacgacagttcaccacacatgaaattctaacgcaccttgattatgacctacaacattgctaatgtttttcaagatcttgaactaaagtgtgcggttatcatgtttagaacatacagaacttacaacaagaatgcattgcaAGAAAT--G------GACT-GTG-----G-AGAGCAAGGT-ATTTTGTTTAGAATTTCTT-AC--AAG----TCAGT--GTTTG-C----AG---GTT-ACGTTGCCC-ATTTT---ACACATGAAATACCAAAAAGGCAGGAATAGTGTA--CATTGTAGAATAAAGGAAT-CATT-ATTT-T----GAAACG-TAAT--------G-AGC--TTCAAAGAAATTTGCGTAACTG-----------------CTTTGCGAAGTGCATGATCAATAG-CAAGCTG---ACT---TCATT-GTCTATA-----GAAGGT-TATCGCTT-CCTTTTAGGCAAA-CT-TCTGCA-TATATCGAGATGGTGAAATTGAAG-ACGGCATATG-TCCATACTA---ATACA-----ATTCTAAT--TG-GTTATTA---AATTGACCAA-G---TTCTCC---AAA-GTA-TGAC--TCATCCC-AATGT----GG---AG--TGAT-TA--AT-CTC----ATTAAG-AG---GG---AG---GACTT------ATAG-CGT-GTGAATTGTTCAT-ACACCCTTTA-A-----TAC-GCCAA-TGATTGTT---TTCT-AAAAACCCAAA-TGACCTGAGGGA--TA-C-TAATCTA----------CAC---TAGTACCAGTGAC-CTGAGAT--CTGTGTGCACTGGAAGCGG--C-AGAGCTTGCGATAGTAATGATG-TGC-AC-CAA-GTT--T---CTAGC----GTCAACA----GATGA--GGGAGAGCA-----TAAAC-----T-CATTGGTGACAAACCACA-GTCA-----CAG-GTTT--ATTT--CTAT------GTTACTGTTT---ATATACGAGTTTTTTTTCG-C-CACTGAAGATTTTTCGCCACT-TTG-ATGTAATTTTTTTC-GCC-A-T--T-GCGCAA---ATGGCGACT-ACAGCTCGAGCCCTaagtaa
gi|25 : ctcccactgaccaaatttcttttatcggggactactttattcgttggcaagcggcgaaaagacctggcaccgtattttatttcattgtcgtaggataccatggatgaataatgccatatttgtggaaagaaataaagtatttgaaaaagttttataaatgggtacaaaaaatatgttacttctataatttctatatggtctggaagaaagagcgtcttgcacaaaagcctgagatccaaaagacctacttaaaactgacaaaatatgagcatctcccctgatcagtaaaaaagactacataactatagaatcgttattaattatcagtctggtcaaaaatagtacatgcctaactgcccctgaccattactgtctcctcacaactcaatgtgtacagacctaaaaagtggctctgaagaacgatgctgctaaaaaaggcagaccaaatacaacccagggttggcgctattcaacttgtctaagacttgactggttggaattgcagtatggttcacgtggcaccacaatgcataaagtatgggaaatgctgacacattgacatggaagaccttcttcgacaacattgttctattatgattcaagatttcgagataacttgacgagtggtgtgcataactaagaagtgtcaacttactgaaaacttcaaaCAGT--ATTTA-C----AG---ATTTACGTTTCCCCATGTT-G-ACACATCAAATAagt
gi|2 : --GCAG-AATGGTGTA--CATTGTAGA-CTATAAAAT--ATT-ATTT-C----GAAACGGCAAA--------T-GAT--TTCAAA---------------GAAATTTGCCTACACCTGCTTTGCGA-GTGCAT-CTCAATAGGCGGC-TG---ACTAATTCATT-ATTCAAT-----GCA--TGTCT--CTT-A--TTAT---AAATCATCTCAAA-AACAT------------ATAGAGA---------TG----A-CCTAAATTT--G-----TGT----------GTATTT----AATTGACATTGT---TTCT-CCAAAAACGTA-TGA--TTAATCCCGAATATTAATGGCATGAAATGAA-TACAAT-C-CCCACAT---ACAGCCAGG---CTCAAGACCTTAACTC-CTGTGA--GCAAATGA-CCACAATGCC--TTA-AT----TAC-G-CAAATTATTGATTT-CCTG--TAT-TCCAAA-TGACCTGA-GGA--TA-CTAAGTATA--TTGCCCTCCACCCATAGTAACAGTTAC-CTGAG--TCTTGTGT-CACT-GAAGCGAATT-AGA---------AACACC-ATTTTGT-ATG-AGCGCAGTTAAACAAACACG-GTGGAAAACTTGAC-A--CACAGTCCA-----C--AG-----GTTACTACT---TTAT--TACGT-AGATT-T----TTT--TTTT--T--C------GCCAC---TG---A-----GATTTT-TTTTCGTCCCCCC----------------T-TTGAA---ATTTCTTTTC-GCC-ATT--G-ACGCAA---ATGGCGACTCACA-CTCGAGCCCTGATATAT
gi|23 : T----AATTGACCAA-G---TTCT-C---AAA-GTAATGACTTT-ATCCC-AATAT----GG---AG-ACGA--TA--ATCC-C----AT---A-TGA--GG---TGA--GACTTatttcgcttctcaacatatacccacagtctaaacctttaattttctatttactctgtgctgcgtcgatctactaccaagggagatatttctatcttccttcgacttatagccttgaatgacttgcgcgagctaaaaacatatcacgaagcgacatgagagcaagacccaacggttcttgttccttaggaatatgtaactaataccgcatcaaattgaataaacatttcaaaagactactaagtgtgttgtcgcctaagaagagcaactcgaaactcaaatttaacggaaacaaaattgtatcgtgaaagattcgcactcggtcgttttaaaaataaaacatttggcatttaaaagtccacgccttatccacacggcacgcaacactcttcagaggaggaacccgaggcgcaaacttaacg
gi|10 : G---GG---TGA--GACTTT----AATTGTCAAGCAAAATGA-CCACAACACC--C---CTAAAGTAC-G-CAA-TTATTGATTTTCTCC-GTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTA-----CCAC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA-TTTAGA---------AAACACCAGTTTGCGACGAAGTGCAGTTAAAC-AACACAGGTTAGGAAAATGAC-A--CACAGGTCACAGGTT--AA-----TATTCTTAT---TTAC--TG-TT-A--TTACGGTATTTGGTTTT--T--C------GCCAC---TTTACA-----GATTTTTTTGTCG-GCCACT----------------T-TTG-A---ATTTTTTCTTCGCC-A-TTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTG
gi|9 : G---GG---TGA--GACTTT----AATTGTCAAGCAAAATGA-CCACAACACC--C---CTAAAGTAC-G-CAA-TTATTGATTTTCTCC-GTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTA-----CCAC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA-TTTAGA---------AAACACCAGTTTGCGACGAAGTGCAGTTAAAC-AACACAGGTTAGGAAAATGAC-A--CACAGGTCACAGGTT--AA-----TATTCTTAT---TTAC--TG-TT-A--TTACGGTATTTGGTTTT--T--C------GCCAC---TTTACA-----GATTTTTTTGTCG-GCCACT----------------T-TTG-A---ATTTTTTCTTCGCC-A-TTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGct
gi|13 : CC--TTA-AT----TAC-G-CAA-TTATTGAT---TTTCTGTAAACCCA--------------------CTTAATCTA---------CCAC---TAGTACCAGTTAC-CTGAGATC--TGTGTGCACT-GAAGCGA-TT-AGA---------AAC-ACCAAGTTGC-ACG--A-GCA--------A--A---ATTAAC-AC---AC-AGTCACAGGTTA-----T--ATTTCTATGTACTGTT----TAT--TA----------CGG-ATTT--TTTTTCC--C------ACCACT--TT---G-----GAATTTTTTT------CACC--------------------------ATTGTT------------------GCAA---ATGGCGACTCACAGCTCGAGCCCTGct
gi|17 : ccAG-ATTT--TTTT--T--TTGTCTTGCCAC---TTA--A-----AATTTTTTTTTCG-C-CACT----------------TCTTG-A---ATTTTTTTCGTGCCAA-T--T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTG
gi|16 : ttataattttatgtaatgtttattacggaagaaagaaAG-ATTT--TTTT--T--TTGTCTTGCCAC---TTA--A-----AATTTTTTTTTCG-C-CACT----------------TCTTG-A---ATTTTTTTCGTGCCAA-T--T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTGtt
gi|18 : ttataattttatgtaatgtttattacggaagaaagaa------GCCAC---TT---T-----GAATTTTTTTTCG-C-CACT----------------T-TCA-A---ATTTTTTTC--GCC-A-TT-G-GCGCAAATG---GCGACTCACAGCTCGAGCCCtt
gi|27 : gaaaattgaacacaaaaaccatttttatgtactatttattacgaaaaaaaaatttgGCC-A-TT-G-GCGCAAATG---GCGACTCACAGCTCGA
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): GGAAAAAAATTGTATCCGTTGAAAATTTCGAACTCGGTCGTTTTAAAAAAAAACACAGTTGGAGCATTTTAAAGTCCACAGCCTTATCCAATATTGCCACGCCGCACATTCCAAACACCACAAGGAAAACTTAACGTTGCAGATGAAGTTTGAGCAGGAGAAAGTTAACGAAAATTCGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCGGGATTCCCCTGTATTTTGAGTCTAAAGAAACCACATTTAAATCGCTTCCTGCAATGATTTCAAACTTAATTTATTTTTGACTAATTATTGTCAATACACCACCTTATAGACTTATTTTTCTTATAATTGGATAAAGCGACCAGAAAGTCTCCACGATTTTACTATATCTATGAAATAACTTTATTTACCGACTCTTTCATGCAACACCTTTAGGGAAATCACCATAGATTACATGCAACACCTTCTTTC
Unaligned ( gi|11 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|12 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|19 ): CAAGGAATATTGTTAACAGACGCCTGAGGATGAAAAATCCATTCTCATAGCTGACAAAATATGAACATCTCCCATATCAATAAAACAAGACTGCAAAC
Unaligned ( gi|21 ): GTTCCCAGCCTGTCCCAAGTTTAATCATTCAAGATTTTTATTAACGCTGTTAACGATGGTTAATAGCAATGGTAAAGGATATATTTC
Unaligned ( gi|22 ): ATTTGAATAAATCATCTTATCATTTTTTTACGCAACACCTTTAAGGAAATTAACATTAGGCGTGCAACATCCTCTTTC
Unaligned ( gi|24 ): GCAACACTTTTAGGGATAATAGCAATAAATTGCAACACCTTCTTTC
Unaligned ( gi|26 ): ACTTGGCCTTATCAATTTCACAGCCTTGAGCAAATTTTTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 1 222 3333333 111 1111 1 11 333333333333333333333333333333333333333333333333333333333 11 1 11 3333333 22 2222222 2222222222 1 1 111 11 1111 2222 11 1111 22222 11 33333333333333333 44444444444444444444444444444444444444444444444444444444444444444444444444444444 11111 11 22222222 3333 1111 111 222 22222222222222222 22 11 5555555555 11 11111111 55555555555 111 1 22222 1 111 11 22222 22222222222 2222222 2222 2222222 111 11 11111 111 22222222 2222222 111 222222222 1 22 1 1 22222 1 11 1 33333333 111 222222 333333333333 33333333 111 3333333333333 111 222222222 111111 111 111 1 11 222222 22222222 11 111 111 22222 1
lowQualScore : 999 33 0 2 5 1 444 3 3 1 4444444 777 2 7777 9 2 3 2 66 666666666666666666666666666666666666666666666666666666666 6 77 88 0 66 6 4444 6 6 2 8888888 00 1 9 3 3 8888888 888 5555555555 5 5 1 5 1 111 00 4444 7777 6 33 4444 11111 99 3 1 55 3 99999999999999999 55555555555555555555555555555555555555555555555555555555555555555555555555555555 3 66666 6 44 99 00000000 5555 77 5 2222 000 8 6 333 22222222222222222 0 77 11 1 3 0 22 5 4444444444 55 88888888 99999999999 88 5 5 5 000 1 1 11111 1 7 3 9 111 1 11 8 00000 3 88 8 1 66666666666 8 8 0000000 0 0 7777 3333333 6 111 6 6 3 2 44 88888 111 88888888 6 1111111 5 777 5 5 8 111111111 5 1 5 2 00 0 44 0 5 88 6 00000 0 5 33 0 77777777 111 6 777777 6 666666666666 44444444 6 1 111 2222222222222 000 3 88 444444444 666666 2 7 333 22 6 555 6 3 0 33 555555 22222222 99 8 66 4 222 1 666 77777 0 0 5
lowQualScore : ... .. . . . . ... . . . ....... ... . .... . . . . .. ......................................................... . .. .. . .. . .... . . . ....... .. . . . . ....... ... .......... . . . . . ... .. .... .... . .. .... ..... .. . . .. . ................. ................................................................................ . ..... . .. .. ........ .... .. . .... ... . . ... ................. . .. .. . . . .. . .......... .. ........ ........... .. . . . ... . . ..... . . . . ... . .. . ..... . .. . . ........... . . ....... . . .... ....... . ... . . . . .. ..... ... ........ . ....... . ... . . . ......... . . . . .. . .. . . .. . ..... . . .. . ........ ... . ...... . ............ ........ . . ... ............. ... . .. ......... ...... . . ... .. . ... . . . .. ...... ........ .. . .. . ... . ... ..... . . .
lowQualScore : 888 22 0 3 7 7 555 2 7 0 8888888 555 5 2222 8 5 2 5 55 222222222222222222222222222222222222222222222222222222222 7 77 77 8 55 7 5555 7 7 2 3333333 88 0 8 2 7 2222222 777 4444444444 7 7 4 7 4 777 55 2222 3333 7 33 2222 55555 22 2 7 88 5 33333333333333333 33333333333333333333333333333333333333333333333333333333333333333333333333333333 2 77777 7 00 22 00000000 3333 99 7 1111 000 4 6 777 44444444444444444 7 99 11 6 0 1 99 7 1111111111 77 77777777 99999999999 33 7 7 7 000 4 7 22222 5 7 0 3 777 0 00 0 00000 8 88 0 0 66666666666 0 0 6666666 8 8 4444 8888888 7 777 7 7 2 5 00 22222 777 88888888 7 7777777 0 555 0 0 7 111111111 0 4 7 5 66 0 11 0 0 22 5 66666 0 0 88 0 88888888 777 7 555555 7 000000000000 22222222 7 0 777 0000000000000 000 7 22 333333333 333333 5 5 222 00 7 333 7 5 0 88 666666 99999999 44 9 11 4 888 1 000 44444 8 8 5
consensus : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA---GCTTTTTTAAACANCA---TG--TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACCTTAACATGT-C-CCTCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGAA-GGAAC-ATG-GTGC-AAAAAAGGCAG-AC-AAATATTACAA-CC-AGAG--GGTTTGCTGATTCAACTTGTCCTAAAGACCTTGACTCGTAT-TTGAA-T-GCAGGTA-GAC-CA-G-TT-CA-CCACA-ATG---AAATTCT----AACGCTG--ACCTT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGCTNAG---------AAC-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATTTCTTTACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAA---A----TTTGC-T-A-CTG---CTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TCA-TTGTCTATATAGGAGAATGTCGCTTNCCTTTAG---AACT--CG-C-----TCGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATCAAGTTCT-C---AAA-GT-ATGACTTTCATCCC-AATATT---GG---AG-ACGA-TATAATCCCCATA-------AG-GG---T-GA-GACTTTTAAT--TGTCA--GCAAA-TG-ACCACAACACCC-TT-AATTA-CG-CAA-TTATTGATTT-CTCCGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTA----C-TACCAC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------NCACC-AGTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CAC-GGTTAGGAAC-TGACACACAGGTCACAGGTTAATATTCTTNTTTAC-TG-TTAT-TACGG-ATTT--TTTTTC------GCCACTT---AGA-TTTTTTTTTCG--CCACTT-T--TG-AATTTTTTTCGCGCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
Reference ( family-506 ) : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA--AGCTTTTTTAAACANCA---TGAATTCAAAAAAAATGAGCTG-CATTGCCCTAACTGCCTCTGACCTTAANATGT-C-CCTCAC-AACCTCAAGTGTGT---TACA-ACCTAAAAGTTG-GCTCTGAA-GGAAC-ATG-GTGCAAAAAAAGGCAG-AC-AAATATTACAA-CC-AGGG--GGTTTGCTGATTCAACTTGTCCTAAAGACCTTGACTTGTAT-TTGAA-T-GCAAGTACGAC-CA-G-TT-CA-CCACA-ATG---AAATTCT----AACGCTG-CACCTT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGTTTAG---------AAC-AT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATTTCTTTACCAAAGCTGATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAA---A----TTTGC-T-A-C-----CTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TTA-TTGTCTATATAGGAGAATGTTTCTTGCCTTTAG---AANT--CG-C-----TCGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATNGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATNAAATTCT-C---AAA-GT-ATGACTTTCATCCC-AATATT---GG---AGAACGA-TATAATCCCCATA-------AG-GG---T-GA-GACTTTTAAT--TGTCA--GCAAA-TG-ACCACAACACC--TT-ANTTA-CG-CAA-TTATTGATTT-CTCCGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTA----CGTACCAC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------NNACC-ANTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CACGGGTTAANAANATGACACACAGGTCACAGGTTANTATACTNNTTTAC-TA-NTAT-TACGG-ATTT--TTTTTC------GCCACTT---AGA-TTTTTTTTTCG-CCCACTT-T--TG-AATTTTTTTCNCGCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
gi|1 : TCCCCT--GATCAGTAAAA--AAG-ACTACATAACTATAGAATCGTTATTAATTATCAGTCTGG--TCAAAAA---T-AG-TA-CAT-GCC-TAACTGCCCCTGACCATTAC-TGT-CTCCTCAC-AAC-TCAA-TGTGT----ACAGACCTAAAAAGTG-GCTCTGAA-G-AACGATG-CTGCTAAAAAAGGCAG-ACCAAATA---CAA-CCCAGGGTTGGC--GCT-ATTCAACTTGTCT--AAGAC-TTGACTGGT---TGGAA-TTGCA-GTATGGTTCACG-TGGCA-CCACA-ATGCATAAAGTATGGGAAATGCTGACACATT-GAC-ATGGAAGACCTTCTTCGACAACATTGTTCTATTATGATTCAAG--ATTTCGAGATAACTTGACGAGTGGTGTGCATAACTAAGAAGTGTCAACTTACTGAA---------AAC-TTCAAAAG--------------------AAAT--G------GACT-GTG-----G-AGAGCAA-GGTATTTT-GTTTAGAATTTCTT-AC--AAG----TCAGT--GTTTG-C----AG---GTT-ACGTTGCCC-ATTTT---ACACATGAAATACCAAAAAGGCAGGAATAGTGTA--CATTGTAGAATAAAGGAATCATTATTT-TGAAACG-TAAT--------G-AGC--TTCAAAGAA---A----TTTGCGTAA-CTG---CTTTGCGAAGTGCATGATCAATAG-CAAGCTGACT---TCA-TTGTC--TATAGAAGGTTATCGCTTCCTTTTAGGCAAACTTCTG-CATATATCGAGATGGTGAAATTGAAG-ACGGCATATGTCCATACTAATA----CAATTCT-AATTGGT-TA----TTAAATTGAC---CAAGTTCTCC---AAA-GT-ATGAC--TCATCCC-AATG-T---GG---AG--TGA-T-TAATCTCATTA-------AG-AG---G-GAGGACTTATAGCG-TGT----G-AAT-TG-TTCAT-ACACCCTTT-AA-TA-CGCCAA-TGATTGTTTT-CT--AAAAACCCAAA-TGACCTGAGGGA--TA-C-TAATCTA---------CAC---TAGTACCAGTGAC-CTGAGAT--CTGTGTGCACTGGAAGCGGCAGAGCTTGCGATAGTAATGATGTGCACCAAGTTTCTAGCGTCAACAGATGAGG-GAGAGCA--TAAAC-T-CATTGGTGACAAAC----CACA---GTCACAGGTTTAT-TTCTATGTTAC-TGTTTATATACGA-GTTT--TTTTTC------GCCACTGA--AGA-----TTTTTCG--CCACTT-TGATGTAATTTTTTT--CGCCATT---GCGCAA---ATGGCGACT-ACAGCTCGAGCCCT
gi|10 : ctcccactgaccaaatttcttttatcggggactactttattcgttggcaagcggcgaaaagacctggcaccgtattttatttcattgtcgtaggataccatggatgaataatgccatatttgtggaaagaaataaagtatttgaaaaagttttataaatgggtacaaaaaatatgttacttctataatttctatatggtctggaagaaagagcgtcttgcacaaaagcctgagatccaaaagacctacttaaaactgacaaaatatgagcatcG-GG---T-GA-GACTTT-AAT--TGTCAA-GCAAAATG-ACCACAACACCCCTA-AAGTA-CG-CAA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTA----CGTACCAC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAAATGACACACAGGTCACAGGTTAATATTCTTATTTAC-TG-TTAT-TACGGTATTTGGTTTTTC------GCCACTTTACAGA-TTTTTTTGTCG-GCCACTT-T--TG-AATTTTTTCTTCGCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGagt
gi|13 : CC--TT-AATTA-CG-CAA-TTATTGATTT--TCTGTAAACCCA--------------------CTTAATCTA----C----CAC---TAGTACCAGTTAC-CTGAGAT--CTGTGTGCACT-GAAGCGA-------T----TAGAAA-------CACC-AAGTT---GC----AC-------G-A---GCA---AAA----------TTA--------ACACACA-GTCACAGGTTA-TATTTCTATGTAC-TGTTTAT-TACGG-ATTT--TTTTTC-------CCA-----------------------CCACTT-T--GG-AATTTTTTTCA--CCATT-G-TTGCAA---ATGGCGACTCACAGCTCGAGCCCTGct
gi|14 : cc---------AAC-AT--ACAG--------------------AAACTTGTAAAAAGAAATGTGTTGGTGGTGAGCAA-GTGGCTAT-GC--AGGATTT--TTACCAAA----ATCAGT--ATCTG-CCAGTAA---GTTTACGATTCCCCATTTTGACACACATCA------------------------------TTGTAGAAT-----AATTATTTCTA-TGGAACG-CATT--------G-AGT--TTCAAAGAA---ATGTGTTTAT-T-T-C-----CTCTGTGATATGCAT-ATCAATAA-C-GGTTTACT---TTA-TTGT
gi|15 : TGTTCTCCT--TATCAGT-AAA-CAAG-ATT
gi|16 : cactgttgaaaccaaaaattctttttcgcacacttttcgagcgacgaaaaaccacaaaaccctatttttcagttatatccatgtaatgctatagttgtggaaaagaataaaaagtttcaagtaaatttgaaaagtttaaataaattacaaataaattaG-ATTT--TTTTTTTGTCTTGCCACTT---AAAATTTTTTTTTCG--CCACTTCT--TG-AATTTTTTTCGTGCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTG
gi|17 : ttataattttatgtaatgtttattacggaagaaagaaaG-ATTT--TTTTTTTGTCTTGCCACTT---AAAATTTTTTTTTCG--CCACTTCT--TG-AATTTTTTTCGTGCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTGtt
gi|18 : ttataattttatgtaatgtttattacggaagaaagaaaTTTG------GCCACTT---TGA-ATTTTTTTTCG-CC-ACTT-T--CA-AATTTTTTTC--GCCATT-G-GCGCAAATG---GCGACTCACAGCTCGAGCCCtt
gi|19 : gaaaattgaacacaaaaaccatttttatgtactatttattacgaaaaaaaaaTCTCCCA-TATCAATAAAA-CAAG-ACTGCA-AAC
gi|2 : caaggaatattgttaacagacgcctgaggatgaaaaatccattctcatagctgacaaaatatgaaca--GCAG-AATGGTGTA--CATTGTAGA-CTATAAAAT-ATTATTT-CGAAACGGCAAA--------T-GAT--TTCAAAGAA---A----TTTGCCT-A-CACCTGCTTTGCGA-GTGCAT-CTCAATAGGC-GGCTGACTAATTCA-TTATTCA-AT----GCATGTCTCTTA---TTAT---AAAT--CATC-----TC--AA-----------AAACA----------------T-ATAGAG-ATGACCTAAATTTGTGTG--TATTTAATTGACATTGT--TTCT-CCAAAAACGT-ATGA--TTAATCCCGAATATTAATGGCATGAAATGAATACAATCCCCACATACAGCCAG-GC---TCAA-GACCTTAACTCCTGTGA--GCAAA-TG-ACCACAATGCC--TT-AATTA-CG-CAAATTATTGATTT-C-CTGTAT-TCCAAA-TGACCTGA-GGA--TA-CTAAGTATATTGCCCT-CCACCCATAGTAACAGTTAC-CTGAG--TCTTGTGT-CACT-GAAGCGA------AT----TAGAAA------C-ACC-ATTTT---GT----AT-------G-A-GCGCAGTTAAACAAACACGG-TGGAAAACTTGACACACAGTCCACAGGTTACTA--CTTTATTACGTA-G-AT-TT-----TTT--TTTTTC------GCCACTG---AGA--TTTTTTTTCGTCCCCCCT-T--TG-AAATTTCTTTTCGCCATT-G-ACGCAA---ATGGCGACTCACA-CTCGAGCCCTGATATAT
gi|20 : AGTA-GAC--A-G-TT-CA-CCACA-ATG---AAAT-AT----AATGCTG--ACCTTTGATAA-G----ACCTT----GACAACATTG--CTAATG-TATTCAAGGCATC-TGAACT-A----------AGTGTGTG------------Gatttcgcttctcaacatatacccacagtctaaacctttaattttctatttactctgtgctgcgtcgatctactaccaagggagatatttctatcttccttcgacttatagccttgaatgacttgcgcgagctaaaaacatatcacgaagcgacatgagagcaagacccaacggttcttgttccttaggaatatgtaactaataccgcatcaaattgaataaacatttcaaaagactactaagtgtgttgtcgcctaagaagagcaactcgaaactcaaatttaacggaaacaaaattgtatcgtgaaagattcgcactcggtcgttttaaaaataaaacatttggcatttaaaagtccacgccttatccacacggcacgcaacactcttcagaggaggaacccgaggcgcaaacttaacg
gi|23 : cTAATTGAC---CAAGTTCT-C---AAA-GTAATGACTTT-ATCCC-AATA-T---GG---AG-ACG---ATAAT-CCCATA-------TGAGG---T-GA-GACTT
gi|25 : CAGT--ATTTA-C----AG---ATTTACGTTTCCCCATGTT-G-ACACATCAAATA
gi|27 : CGCCATT-G-GCGCAAATG---GCGACTCACAGCTCGA
gi|3 : TGTTCTCCT--TATCAGTAAA--CAAG-ATTACA-AACTGTA--AGCCTTTTTAAA--ACA---T---TTCAAAAA---TTAGCTAACAT-GCCCTAAC-GCCT-TCACCTTAAC-TGT-C-CCTCACCAACCTCAAATGTGT----ACAGACCTAAAAGTTG-ACTCTGAA-GGAAC-ATG-GT-------AAGTCAG-AC-AAAT--TACAA-CT-AGGG------TGCTC-TTCAACTTGTCT--AAGCCCTTGACCTGT----TGA--T-GCAAGTA-GAC-CA-G-TTTCA-CCA-A-ATA---AAAT-CT----AACACTG-CCCTTT-GAT-ATG----ACCTT----GACAACACTG--CTAATGTTTT-CAAG--G-CTTG------------------TG-GCA---------------ATCA-GCTATG---------AAC-AT--ACAG--------------------AAACTGG------GGCTTGTG-----GGAGAGCAAAGTGATTTTTGC--AGAACTCCTTCACCAAAG----TCAGTTAATTTA-C----AG---GTTTACGTTTCCCCATTTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTAACCATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGC--TTCAAAG--------------------------CTTTGTGATGTGCAT-ATCAATAG-C-G--TGACT---TCA-TTGTCTAT-----AGCAT-TTTCTT-CCTTTAA---AAAT--CG-C-----TTGG-AT-GT-ATATTGAAA-AGTG------TTCA-ACT-ATTG-----AGTCTAAA--GGAGTAA----TTAATTGACAACC---TTCT-C---AAA-GT-ATGACTTTCATCCC-AATA-T---GG---AGAACGA-T-TAAT--CCATA-------AG-GG---T-GC-GACTTTTCAT--TGTCATGGTAAA-TGAACCACAACACC--TT-ACTTA-TG-CAA-TTATTGA--T-CTTGGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTA------TACCAC---TAGTACC-GTTACGCTGAGATTCTTGTGTGCACT-GAAGCGA-------T----TAGAAA------CAACG-AAGTT---GC----AC-------GCAGGCATGGCCTAACA-------GTTAACAACCTGACACACAGATCA-----TATTGTACTGGTATAC-TA-GTAT-T-CAG-ATTT--TTTTCC------GCCACTT---AGA-TTTTTTTTTCG-CACACTT-T--TG-AATTTTTTTTCAGCCA-T-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGAT-TATa
gi|4 : TCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA---GCTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACCTTAAAATGT----------AGCCT---GTGTAT---TACA-ACCTAAAGG----------------AC-ATA-GTGCAAAAAAAG-CAC--C-AAATATTAAAA-CC-AGAG--GGTT-GCTGATTCAACTTGTCCTAAAGACTTTGACT-GTAT-TTGAA-T-GCAGATACGAC--A-G-TT-CA-CCACACATG---AAATTCT----AACGC----ACCTT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAA---A----TTTGC-T-AACTG---CTTTGCGAT-TATAT-ATCAATAG-C-GGCCGACT---TTATTTGTCTATATAGGAAAAT-TTGCTTGCCTTTAG---AACT--CG-C-----TTGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATTCT-C---ATA-AT-TTGACTTTCAACCC--ATATT---GG---AG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GA-GACTTTTAAT----TCA--GC-AA-TG-ACCACAAAA----TTAATTTATTG-CAA--TATTG-TTT-CT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAt
gi|5 : atgagcgaTCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA---GCTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACCTTAAAATGT----------AGCCT---GTGTAT---TACA-ACCTAAAGG----------------AC-ATA-GTGCAAAAAAAG-CAC--C-AAATATTAAAA-CC-AGAG--GGTT-GCTGATTCAACTTGTCCTAAAGACTTTGACT-GTAT-TTGAA-T-GCAGATACGAC--A-G-TT-CA-CCACACATG---AAATTCT----AACGC----ACCTT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAA---A----TTTGC-T-AACTG---CTTTGCGAT-TATAT-ATCAATAG-C-GGCCGACT---TTATTTGTCTATATAGGAAAAT-TTGCTTGCCTTTAG---AACT--CG-C-----TTGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATTCT-C---ATA-AT-TTGACTTTCAACCC--ATATT---GG---AG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GA-GACTTTTAAT----TCA--GC-AA-TG-ACCACAAAA----TTAATTTATTG-CAA--TATTG-TTT-CT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAaagtaa
gi|7 : atgagcgaTCACCA--TATCAATAAA--CAAG-ACTGCA-AACTA-----GTC-------ATACCA----GTTTTCCAAAAA--TGAGATA-CAT-GCCCTAACTGCCTCTGACCTCACTAGGTGA-CCTTGC-AA-CTCATATGCGTACATATA-ATC--ACAGTTATGTTCTGGATGGAGC-ATG-ATGC--AGAAAGGCAG-GC-AA--ATTACAG-AC-AAAG--G--TTGTT-ATTCAACTTGT-CTACA-ACCTTGAC-TG----TTGAA-A-GCAGAT---GT-TA-G-TT-CA-CCTCA-ATA---AAA-TCT----AACTCTG--ATCTT-GA-TATG----ACATT----GTTAACATTG--TTATTGGTTTCAAAGC-ATCAT------A----------TGTGTGCA---------------AACATA--CAG---------AACTGTA-ACAA--------------------GAAATGT------TGTTGGTA-----GGAGAGCAA-GTGGTTAT-GC--AGGAT---TTTA-CAAA----ATCAGT--ATCTGTC----AGTAAGTTTACGTTTCCCCAT-TTCG-ACACATCA---------------------GT---------GTAGAA----AGAATTATTTTCTATGGAACG-CAAT--------G-AGT--TTCAAAAAATGTG----TTTAT-T-T-G-----CTCTGTGATGTGCAT-ATCAATAA-C-GGTCTACT---TTA-TTGTTTAT-----AGAATGTTTGTTTCCTTTAA---AAaagtaa
gi|8 : gcatcCCCTA--TACCATTAAAA-CAAG-ACT-CA-AACTTCA--CGCTTTTT-AAACCACA---T----TTGTAAAAAATGAGCTA-CATAG---TA--------TG-CCTTAAC-TGT-C-C-TCAC-AAC-TCAAATG------------------AGTTG-GCTCTGAA-GAGAC-ATGCCTGC---AAAAGGCAGAAC-A---ATTACAATCC-AGCG--CG-TTGCTA--TAAACTTGTTCCAAGG--CTCGACTCGTGTATAGAACT-GCGA----AAT-CA-GTTT-CAGCCACA-
gi|9 : acaaataatgttcttgctataccccacaatctctatatttctcaagaaagatcttgtaaacttagctcgccctgaggatcaaaaacctacctctaagctgacaaaatatgacatctgacG-GG---T-GA-GACTTT-AAT--TGTCAA-GCAAAATG-ACCACAACACCCCTA-AAGTA-CG-CAA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTA----CGTACCAC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAAATGACACACAGGTCACAGGTTAATATTCTTATTTAC-TG-TTAT-TACGGTATTTGGTTTTTC------GCCACTTTACAGA-TTTTTTTGTCG-GCCACTT-T--TG-AATTTTTTCTTCGCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGcaaggagggttaaaaaataccgctgacagctattgagtatagaa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAAAAAAATTGTATCCGTTGAAAATTTCGAACTCGGTCGTTTTAAAAAAAAACACAGTTGGAGCATTTTAAAGTCCACAGCCTTATCCAATATTGCCACGCCGCACATTCCAAACACCACAAGGAAAACTTAACGTTGCAGATGAAGTTTGAGCAGGAGAAAGTTAACGAAAATTCGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCGGGATTCCCCTGTATTTTGAGTCTAAAGAAACCACATTTAAATCGCTTCCTGCAATGATTTCAAACTTAATTTATTTTTGACTAATTATTGTCAATACACCACCTTATAGACTTATTTTTCTTATAATTGGATAAAGCGACCAGAAAGTCTCCACGATTTTACTATATCTATGAAATAACTTTATTTACCGACTCTTTCATGCAACACCTTTAGGGAAATCACCATAGATTACATGCAACACCTTCTTTC
Unaligned ( gi|11 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|12 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|21 ): GTTCCCAGCCTGTCCCAAGTTTAATCATTCAAGATTTTTATTAACGCTGTTAACGATGGTTAATAGCAATGGTAAAGGATATATTTC
Unaligned ( gi|22 ): ATTTGAATAAATCATCTTATCATTTTTTTACGCAACACCTTTAAGGAAATTAACATTAGGCGTGCAACATCCTCTTTC
Unaligned ( gi|24 ): GCAACACTTTTAGGGATAATAGCAATAAATTGCAACACCTTCTTTC
Unaligned ( gi|26 ): ACTTGGCCTTATCAATTTCACAGCCTTGAGCAAATTTTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 1 11111 111 3333333 111 1111 1 11 4444444444 1111 22222222 3333333333333333 11 11 2222222 22 333333 1111111111 1 1 111 11 1111 1 11 1111 22222 11 33333333333333333 444444444444444 4444444444444444444444444444444444444444444444444444 11111 11 22222222 33333 1111 111 222 22222222222222222 22 11 5555555555 11 44444444444 111 1 33333 1 111 2222222222 111 22222222222 11111 2222 11111 111 11 2222222 11111111 2222222 111 222222222 1 22 1 22222 1 11 1 2222222222 111 222222 333333333333 3333333 111 3333333333333 111 555555555555555555555 111 11 11 1 6666666666666666 111111 111 22222222 22 111 333 1
lowQualScore : 999 33 0 2 5 1 55555 3 000 5555555 777 2 2222 3 2 3 2 66 0000000000 6 3333 1 33333333 3 1111111111111111 6 77 88 66 6 4444 6 1 6666666 00 1 9 3 3 444444 888 8888888888 5 5 1 5 1 111 00 4444 7 6 6 3 33 4444 11111 99 3 1 55 3 99999999999999999 555555555555555 1 0 44 1111111111111111111111111111111111111111111111111111 3 66666 6 44 99 00000000 6 11111 77 5 2222 000 8 6 333 22222222222222222 0 77 11 1 3 0 22 5 4444444444 55 4 1 66666666666 88 5 5 5 000 1 33333 1 7 33 7 111 2222222222 3 0 111 1 66666666666 8 8 99999 11 7777 33333 6 888 6 6 2 44 7 1111111 66666666 6 1111111 5 777 5 5 8 111111111 5 1 5 8 2 00 0 5 88 6 00000 0 5 33 0 9999999999 111 6 777777 6 666666666666 3333333 6 111 2222222222222 000 3 88 666666666666666666666 111 6 00 1 2 00 8 3 4 66 8888888888888888 333333 555 22222222 8 66 4 8 66 4 33 1 666 000 3 0 0 5
lowQualScore : ... .. . . . . ..... . ... ....... ... . .... . . . . .. .......... . .... . ........ . ................ . .. .. .. . .... . . ....... .. . . . . ...... ... .......... . . . . . ... .. .... . . . . .. .... ..... .. . . .. . ................. ............... . . .. .................................................... . ..... . .. .. ........ . ..... .. . .... ... . . ... ................. . .. .. . . . .. . .......... .. . . ........... .. . . . ... . ..... . . .. . ... .......... . . ... . ........... . . ..... .. .... ..... . ... . . . .. . ....... ........ . ....... . ... . . . ......... . . . . . .. . . .. . ..... . . .. . .......... ... . ...... . ............ ....... . ... ............. ... . .. ..................... ... . .. . . .. . . . .. ................ ...... ... ........ . .. . . .. . .. . ... ... . . . .
lowQualScore : 888 22 0 3 7 7 00000 2 222 3333333 555 5 5555 3 5 2 5 55 5555555555 7 2222 7 22222222 2 0000000000000000 7 77 00 55 7 5555 7 0 2222222 88 0 8 2 7 555555 777 7777777777 7 7 4 7 4 777 55 2222 3 7 7 3 33 2222 55555 22 2 7 88 5 33333333333333333 000000000000000 4 8 66 0000000000000000000000000000000000000000000000000000 2 77777 7 00 22 00000000 7 77777 99 7 1111 000 4 6 777 44444444444444444 7 99 11 6 0 1 99 7 1111111111 77 3 3 66666666666 33 7 7 7 000 4 33333 5 7 22 5 777 2222222222 8 8 888 0 66666666666 0 0 66666 66 4444 77777 7 333 7 7 5 00 3 7777777 00000000 7 7777777 0 555 0 0 7 111111111 0 4 7 8 5 22 0 0 22 5 66666 0 0 88 0 8888888888 777 7 555555 7 000000000000 2222222 7 777 0000000000000 000 7 22 888888888888888888888 777 7 77 7 6 77 9 3 4 11 2222222222222222 777777 666 99999999 9 11 4 9 11 4 22 1 000 888 2 8 8 5
consensus : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA-G---CTTTTTTAAACANCA---TG--TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACCTTAACATGT-C-CCTCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGAA-GGAAC-ATG-GTGC-AAAAAAGGCAG-AC-AAATATTACAA-CCAGAGGGTT--TGCTGATTCAACTTGTCCTAAAGACCTTGACT-GTAT-TTGAA-T-GCAG-ATA-GACCA-G-TT-CA-CCACA-ATG---AAATTCT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATTTCTTTACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-CG-GCCGACT---TCA-TTGTCTATAT-GGAGAATGTCGCTTNCCTTTAG---AACTC--G-C-----TCGGAATG-T-ATATTGAAACACTGC-----TTCA-ACTA-TAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATCAAGTT-CTC---AAA-GT-ATGACTTTCATCCC-AATATTG-------GAG-ACGA-TATAATCCCCATA-------AG-GG---T-GAG-ACTTTTAAT--TGTCA--GCAAA-TG-ACCACAACACCCTTAA-TTA-CGC-AA-TTATTGATTT-CTCCGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTAC-TACC----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CAC-GGTTAGG-AA--T-GACA---CACAGGTCACAGGTTAATATTTTTAT-NTACTG-TT-AT-TACG--G-A--------------TTT--T---TTT---TCGCCACTT---AGA-TTTTTTTTTC-G--C-CACTT-T--TG-AATTTTTTTT-CGCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
Reference ( family-506 ) : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA-G---CTTTTTTAAACANCA---TG--TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACCTTAACATGT-C-CCTCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGAA-GGAAC-ATG-GTGC-AAAAAAGGCAG-AC-AAATATTACAA-CCAGAGGGTT--TGCTGATTCAACTTGTCCTAAAGACCTTGACTCGTAT-TTGAA-T-GCAG-GTA-GACCA-G-TT-CA-CCACA-ATG---AAATTCT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATTTCTTTACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-CG-GCCGACT---TCA-TTGTCTATATAGGAGAATGTCGCTTNCCTTTAG---AACTC--G-C-----TCGGAATG-T-ATATTGAAACACTGC-----TTCA-ACTA-TAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATCAAGTT-CTC---AAA-GT-ATGACTTTCATCCC-AATATTG-------GAG-ACGA-TATAATCCCCATA-------AG-GG---T-GAG-ACTTTTAAT--TGTCA--GCAAA-TG-ACCACAACACCCTTAA-TTA-CGC-AA-TTATTGATTT-CTCCGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTAC-TACC----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------NCACC-AGTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CAC-GGTTAGG-AA-CT-GACA---CACAGGTCACAGGTTAATATTCTTNT-TTACTG-TT-AT-TACG--G-A--------------TTT--T---TTT---TCGCCACTT---AGA-TTTTTTTTTC-G--C-CACTT-T--TG-AATTTTTTTCGCGCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
gi|1 : TCCCCT--GATCAGTAAAA--AAG-ACTACATAACTATA-GAATCGTTATTAATTATCAGTCTG--GTCAAAAA---T-AG-TA-CAT-GCC-TAACTGCCCCTGACCATTAC-TGT-CTCCTCAC-AAC-TCAA-TGTGT----ACAGACCTAAAAAGTG-GCTCTGAA-G-AACGATG-CTGCTAAAAAAGGCAG-ACCAAATA---CAA-CCC-AGGGTTGGCGCT-ATTCAACTTGTCT--AAGAC-TTGACTGGT---TGGAA-TTGCAGTATG-GTTCACG-TGGCA-CCACA-ATGCATAAAGTATGGGAAATGCTGACACATT-GAC-ATGGAAGACCTTCTTCGACAACATTGTTCTATTATGATTCAAG--ATTTCGAGATAACTTGACGAGTGGTGTGCATAACTAAGAAGTGTCAACTTACTGAAAA---------C-TTCAAAAG--------------------AAAT--G------GACT-GTG-----G-AGAGCAA-GGTATTTT-GTTTAGAATTTCTT-AC--AAG----TCAGT--GTTTG-C----AG---GTT-ACGTTGCCC-ATTTT---ACACATGAAATACCAAAAAGGCAGGAATAGTGTA--CATTGTAGAATAAAGGAATCATTATTT-TGAAACG-TAAT--------G-AGC--TTCAAAGAAATTTG-CGT-AAC---TGCTTTGCGAAGTGCATGATCAATAG-CAAGCTGACT---TCA-TTGTCTATA--GAAGGTTATCGCTTCCTTTTAGGCAAACTTCTG-CATATATCGAGATGGTGAAATTGAAG-ACGGCATATGTCCATACTAATA----CAATTCTAA-TTGGT-TA----TTAAATTGAC---CAAGTT-CTCC--AAA-GT-ATGACT--CATCCC-AATGT-G-------GAG--TGA-T-TAATCTCATTA-------AG-AG---G-GAGGACTTATAGCG-TGT----G-AAT-TG-TTCATA-CACCCTTTA-ATA-CGCCAA-TGATTGTTTT-CT--AAAAACCCAAA-TGACCTGAGGGA--TA-C-TAATCTA-----C----AC---TAGTACCAGTGAC-CTGAGAT--CTGTGTGCACTGGAAGCGGCAGAGCTTGCGATAGTAATGATGTGCACCAAGTTTCTAGCGTCAACAGATGAGG-GAGAGCA--TAAAC-T-CA----TTGG------T-GACAAACCACA-GTCACAGGTT--TATTTCTATGTTACTGTTT-ATATACG--A-G--------------TTT--T---TTT---TCGCCACTGA--AGA-----TTTTTC-G--C-CACTT-TGATGTAATTTTTTT--CGCCATT---GCGCAA---ATGGCGACT-ACAGCTCGAGCCCT
gi|10 : ctcccactgaccaaatttcttttatcggggactactttattcgttggcaagcggcgaaaagacctggcaccgtattttatttcattgtcgtaggataccatggatgaataatgccatatttgtggaaagaaataaagtatttgaaaaagttttataaatgggtacaaaaaatatgttacttctataatttctatatggtctggaagaaagagcgtcttgcacaaaagcctgagatccaaaagacctacttaaaactgacaaaatatgagcatcG-GG---T-GAG-ACTTT-AAT--TGTCAA-GCAAAATG-ACCACAACACCCCTAAAGTA-CGC-AA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTACC----AC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAA-AT-GACA---CACAGGTCACAGGTTAATATTCTTAT-TTACTG-TT-AT-TACG--GTA--------------TTTGGT---TTT---TCGCCACTTTACAGA-TTTTTTTGTCGG--C-CACTT-T--TG-AATTTTTTCTTCGCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGagt
gi|13 : CCCTTAA-TTA-CGC-AA-TTATTGATTT--TCTGTAAACCCA--------------------CTTAATCTAC----C----AC---TAGTACCAGTTAC-CTGAGAT--CTGTGTGCACT-GAAGCGA-------T----TAGAAA-------CACC-AAGTT---GC----AC-------G-A---GCA---AAA----------TTA----------ACA---CACA-GTCACAGGTT-ATATTTCTAT-GTACTGTTT-AT-TACG--G-A--------------TTT--T---TTT---TC-CCA------------------------C-CACTT-T--GG-AATTTTTTT--CACCATT-G-TTGCAA---ATGGCGACTCACAGCTCGAGCCCTGct
gi|14 : cAA---------C-AT--ACAG--------------------AAACTTGTAAAAAGAAATGTGTTGGTGGTGAGCAA-GTGGCTAT-GC--AGGATTT--TTACCAAA----ATCAGT--ATCTG-CCAGTAA---GTTTACGATTCCCCATTTTGACACACATCA------------------------------TTGTAGAAT-----AATTATTTCTA-TGGAACG-CATT--------G-AGT--TTCAAAGAAATGTGTT-T-ATT---TCCTCTGTGATATGCAT-ATCAATAA-CG-GTTTACT---TTA-TTGT
gi|15 : TGTTCTCCT--TATCAGT-AAA-CAAG-ATT
gi|16 : cactgttgaaaccaaaaattctttttcgcacacttttcgagcgacgaaaaaccacaaaaccctatttttcagttatatccatgtaatgctatagttgtggaaaagaataaaaagtttcaagtaaatttgaaaagtttaaataaattacaaataaattaATAATTTTAT-GTAATG-TTTAT-TACG--G-AAGAAAGAAAGATTTTTT--T---TTTGTCTTGCCACTT---AAAATTTTTTTTTC-G--C-CACTTCT--TG-AATTTTTTTCGTGCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTG
gi|17 : ttATAATTTTAT-GTAATG-TTTAT-TACG--G-AAGAAAGAAAGATTTTTT--T---TTTGTCTTGCCACTT---AAAATTTTTTTTTC-G--C-CACTTCT--TG-AATTTTTTTCGTGCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTGtt
gi|18 : ttATTTTTAT-GTACTA-TTTAT-TACG--A-AAAAAAAA-------TTT--G-----------GCCACTT---TGA-ATTTTTTTTC-G--C-CACTT-T--CA-AATTTTTTT--CGCCATT-G-GCGCAA---ATGGCGACTCACAGCTCGAGCCCtt
gi|19 : gaaaattgaacacaaaaaccTCTCCCA-TATCAATAAAA-CAAG-ACTGCA-AAC
gi|2 : caaggaatattgttaacagacgcctgaggatgaaaaatccattctcatagctgacaaaatatgaaca--GCAG-AATGGTGTA--CATTGTAGA-CTATAAAAT-ATTATTT-CGAAACGGCAAA--------T-GAT--TTCAAAGAAATTTG-CCT-A-CACCTGCTTTGCGA-GTGCAT-CTCAATAGGCG-GCTGACTAATTCA-TTATTCA-AT----GCATGTCTCTTA---TTAT---AAATC--ATC-----TC--AA-----------AAACA----------------TA-TAGAG-ATGACCTAAATTTGTGTG--TATTTAATTGACATT---GTTTCTCCAAAAACGT-ATGA--TTAATCCCGAATATTAATGGCATGAA-ATGAATACAATCCCCACATACAGCCAG-GC---TCAAG-ACCTTAACTCCTGTGA--GCAAA-TG-ACCACAATGCC-TTAA-TTA-CGC-AAATTATTGATTT-C-CTGTAT-TCCAAA-TGACCTGA-GGA--TA-CTAAGTATAT-TGCCCTCCACCCATAGTAACAGTTAC-CTGAG--TCTTGTGT-CACT-GAAGCGA------AT----TAGAAA-------CACC-ATTTT---GT----AT-------G-A-GCGCAGTTAAACAAACAC-GGTGGAA-AA-CTTGACA---CACAGTCCACAGGTTA-----------CTACT--TT-AT-TACGTAG-A--------------TTT--TTTTTTT---TCGCCACTG---AGA--TTTTTTTTC-GTCC-CCCCT-T--TG-AAATTTCTTTTCGCCATT-G-ACGCAA---ATGGCGACTCACA-CTCGAGCCCTGATATAT
gi|20 : -GTA-GAC-A-G-TT-CA-CCACA-ATG---AAAT-AT----AATGCTGAC-C-TTTGATAA-G----ACCTT----GACAACATTG--CTAATG-TATTCAAGGCATC-TGAACT-A----------AGTGTGTG------------Gatttcgcttctcaacatatacccacagtctaaacctttaattttctatttactctgtgctgcgtcgatctactaccaagggagatatttctatcttccttcgacttatagccttgaatgacttgcgcgagctaaaaacatatcacgaagcgacatgagagcaagacccaacggttcttgttccttaggaatatgtaactaataccgcatcaaattgaataaacatttcaaaagactactaagtgtgttgtcgcctaagaagagcaactcgaaactcaaatttaacggaaacaaaattgtatcgtgaaagattcgcactcggtcgttttaaaaataaaacatttggcatttaaaagtccacgccttatccacacggcacgcaacactcttcagaggaggaacccgaggcgcaaacttaacg
gi|23 : caTAATTGAC---CAAGTT-CTC---AAA-GTAATGACTTT-ATCCC-AATA-TG-------GAG-ACG---ATAAT-CCCATA-------TGAGG---T-GAG-ACTT
gi|25 : CAGT--ATTTA-C----AG---ATTTACGTTTCCCCATGTT-G-ACACATCAAATA
gi|27 : CGCCATT-G-GCGCAAATG---GCGACTCACAGCTCGA
gi|3 : TGTTCTCCT--TATCAGTAAA--CAAG-ATTACA-AACTGTAAG---CCTTTTTAAA--ACA---T---TTCAAAAA---TTAGCTAACAT-GCCCTAAC-GCCT-TCACCTTAAC-TGT-C-CCTCACCAACCTCAAATGTGT----ACAGACCTAAAAGTTG-ACTCTGAA-GGAAC-ATG-GT-------AAGTCAG-AC-AAAT--TACAA-CTAGGG------TGCTC-TTCAACTTGTCT--AAGCCCTTGACCTGT----TGA--T-GCAA-GTA-GACCA-G-TTTCA-CCA-A-ATA---AAAT-CT----AACACTGCC-C-TTTGAT-ATG----ACCTT----GACAACACTG--CTAATGTTTT-CAAG--G-CTTG------------------TG-GCA---------------ATCA-GCTATGAA---------C-AT--ACAG--------------------AAACTGG------GGCTTGTG-----GGAGAGCAAAGTGATTTTTGC--AGAACTCCTTCACCAAAG----TCAGTTAATTTA-C----AG---GTTTACGTTTCCCCATTTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTAACCATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGC--TTCAAA--------------------GCTTTGTGATGTGCAT-ATCAATAG-CG---TGACT---TCA-TTGTCTAT-----AGCAT-TTTCTT-CCTTTAA---AAATC--G-C-----TTGG-ATG-T-ATATTGAAA-AGTG------TTCA-ACTA-TTG-----AGTCTAAA--GGAGTAA----TTAATTGACAACC---TT-CTC---AAA-GT-ATGACTTTCATCCC-AATA-TG-------GAGAACGA-T-TAAT--CCATA-------AG-GG---T-GCG-ACTTTTCAT--TGTCATGGTAAA-TGAACCACAACA-CCTTAC-TTA-TGC-AA-TTATTGA--T-CTTGGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTA--TACC----AC---TAGTACC-GTTACGCTGAGATTCTTGTGTGCACT-GAAGCGA-------T----TAGAAA------CAACG-AAGTT---GC----AC-------GCAGGCATGGCCTAACA-------GTTAAC-AACCT-GACA---CACAGATCA-----TATTGTACTGGT-ATACTA-GT-AT-T-CA--G-A--------------TTT--T---TTT---CCGCCACTT---AGA-TTTTTTTTTC-G--CACACTT-T--TG-AATTTTTTTTCAGCCA-T-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGAT-TATa
gi|4 : TCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA-G---CTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACCTTAAAATGT----------AGCCT---GTGTAT---TACA-ACCTAAAGG----------------AC-ATA-GTGC-AAAAAAAGCAC--C-AAATATTAAAA-CCAGAGGGTT---GCTGATTCAACTTGTCCTAAAGACTTTGACT-GTAT-TTGAA-T-GCAG-ATACGAC-A-G-TT-CA-CCACACATG---AAATTCT----AACGC--AC-C-TT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAAATTTG-C-TAA-C---TGCTTTGCGAT-TATAT-ATCAATAG-CG-GCCGACT---TTATTTGTCTATATAGGAAAAT-TTGCTTGCCTTTAG---AACTC--G-C-----TTGGAATG-T-ATATTGAAACACTGC-----TTCA-ACTA-TAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATT-CTC---ATA-AT-TTGACTTTCAACCC--ATATTG-------GAG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GAG-ACTTTTAAT----TCA--GC-AA-TG-ACCACAAAA---TTAATTTATTGC-AA--TATTG-TTT-CT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAt
gi|5 : atgagcgaTCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA-G---CTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACCTTAAAATGT----------AGCCT---GTGTAT---TACA-ACCTAAAGG----------------AC-ATA-GTGC-AAAAAAAGCAC--C-AAATATTAAAA-CCAGAGGGTT---GCTGATTCAACTTGTCCTAAAGACTTTGACT-GTAT-TTGAA-T-GCAG-ATACGAC-A-G-TT-CA-CCACACATG---AAATTCT----AACGC--AC-C-TT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAAATTTG-C-TAA-C---TGCTTTGCGAT-TATAT-ATCAATAG-CG-GCCGACT---TTATTTGTCTATATAGGAAAAT-TTGCTTGCCTTTAG---AACTC--G-C-----TTGGAATG-T-ATATTGAAACACTGC-----TTCA-ACTA-TAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATT-CTC---ATA-AT-TTGACTTTCAACCC--ATATTG-------GAG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GAG-ACTTTTAAT----TCA--GC-AA-TG-ACCACAAAA---TTAATTTATTGC-AA--TATTG-TTT-CT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAaagtaa
gi|7 : atgagcgaTCACCA--TATCAATAAA--CAAG-ACTGCA-AACTA---G---TC-------ATACCAG--TT--TTCCAAAAA--TGAGATA-CAT-GCCCTAACTGCCTCTGACCTCACTAGGTGA-CCTTGC-AA-CTCATATGCGTACATATA-ATC--ACAGTTATGTTCTGGATGGAGC-ATG-ATGC--AGAAAGGCAG-GC-AA--ATTACAG-ACAAAGG--T--TGTT-ATTCAACTTGT-CTACA-ACCTTGACT-G----TTGAA-A-GCAG-AT---GTTA-G-TT-CA-CCTCA-ATA---AAA-TCT----AACTCTGAT-C-TT-GA-TATG----ACATT----GTTAACATTG--TTATTGGTTTCAAAGC-ATCAT------A----------TGTGTGCA---------------AACATAC--AGAA---------CTGTA-ACAA--------------------GAAATGT------TGTTGGTA-----GGAGAGCAA-GTGGTTAT-GC--AGGAT---TTTAC--AAA---ATCAGT--ATCTGTC----AGTAAGTTTACGTTTCCCCAT-TTCG-ACACATCA---------------------GT---------GTAGAA----AGAATTATTTTCTATGGAACG-CAAT--------G-AGT--TTCAAA-AAATGTGTT-T-ATT---TGCTCTGTGATGTGCAT-ATCAATAA-CG-GTCTACT---TTA-TTGTTTAT-----AGAATGTTTGTTTCCTTTAA---AAaagtaa
gi|8 : gcatcCCCTA--TACCATTAAAA-CAAG-ACT-CA-AACTTCACG---CTTTTT-AAAC--CA---CA--TTTGTAAAAAATGAGCTA-CAT-A--------G--TATG-CCTTAAC-TGT-C-C-TCAC-AAC-TCAAATG------------------AGTTG-GCTCTGAA-GAGAC-ATGCCTGC---AAAAGGCAGAAC-A---ATTACAATCCAGCGCG-T--TGCTA--TAAACTTGTTCCAAGG--CTCGACTCGTGTATAGAACT-GCG----A-AATCA-GTTT-CAGCCACA-
gi|9 : acaaataatgttcttgctataccccacaatctctatatttctcaagaaagatcttgtaaacttagctcgccctgaggatcaaaaacctacctctaagctgacaaaatatgacatctgacG-GG---T-GAG-ACTTT-AAT--TGTCAA-GCAAAATG-ACCACAACACCCCTAAAGTA-CGC-AA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTACC----AC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAA-AT-GACA---CACAGGTCACAGGTTAATATTCTTAT-TTACTG-TT-AT-TACG--GTA--------------TTTGGT---TTT---TCGCCACTTTACAGA-TTTTTTTGTCGG--C-CACTT-T--TG-AATTTTTTCTTCGCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGcaaggagggttaaaaaataccgctgacagctattgagtatagaa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAAAAAAATTGTATCCGTTGAAAATTTCGAACTCGGTCGTTTTAAAAAAAAACACAGTTGGAGCATTTTAAAGTCCACAGCCTTATCCAATATTGCCACGCCGCACATTCCAAACACCACAAGGAAAACTTAACGTTGCAGATGAAGTTTGAGCAGGAGAAAGTTAACGAAAATTCGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCGGGATTCCCCTGTATTTTGAGTCTAAAGAAACCACATTTAAATCGCTTCCTGCAATGATTTCAAACTTAATTTATTTTTGACTAATTATTGTCAATACACCACCTTATAGACTTATTTTTCTTATAATTGGATAAAGCGACCAGAAAGTCTCCACGATTTTACTATATCTATGAAATAACTTTATTTACCGACTCTTTCATGCAACACCTTTAGGGAAATCACCATAGATTACATGCAACACCTTCTTTC
Unaligned ( gi|11 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|12 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|21 ): GTTCCCAGCCTGTCCCAAGTTTAATCATTCAAGATTTTTATTAACGCTGTTAACGATGGTTAATAGCAATGGTAAAGGATATATTTC
Unaligned ( gi|22 ): ATTTGAATAAATCATCTTATCATTTTTTTACGCAACACCTTTAAGGAAATTAACATTAGGCGTGCAACATCCTCTTTC
Unaligned ( gi|24 ): GCAACACTTTTAGGGATAATAGCAATAAATTGCAACACCTTCTTTC
Unaligned ( gi|26 ): ACTTGGCCTTATCAATTTCACAGCCTTGAGCAAATTTTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 1 11111 111 3333333 111 1111 1 11 4444444444 1111 22222222 3333333333333333 11 11 2222222 22 2222 111111111 1 1 111 11 1111 1 11 1111 22222 11 33333333333333333 444444444444444 4444444444444444444444444444444444444444444444444444 11111 11 22222222 33333 1111 111 222 22222222222222222 22 11 5555555555 11 44444444444 111 1 33333333333 111 11 22222 22222222222 11111 2222 11111 111 11 1 2222222 11111111 2222222 111 222222222 1 22 1 22222 1 11 1 2222222222 111 222222 333333333333 2222222 111 3333333333333 111 7777777777777777777777 111 11 1 6666666666666666 11 1111111 222 11 111 333 1
lowQualScore : 999 33 0 2 5 1 55555 3 000 5555555 777 2 2222 3 2 3 2 66 0000000000 6 3333 1 33333333 3 1111111111111111 6 77 88 66 6 4444 6 1 6666666 00 1 9 3 3 6 6 1111 888 888888888 5 5 1 5 1 111 00 4444 7 6 6 3 33 4444 11111 99 3 1 55 3 99999999999999999 555555555555555 1 0 44 1111111111111111111111111111111111111111111111111111 3 66666 6 44 99 00000000 6 11111 77 5 2222 000 8 6 333 22222222222222222 0 77 11 1 3 0 22 5 4444444444 55 4 1 66666666666 88 5 5 5 000 1 55555555555 33 7 111 11 8 00000 3 88 8 1 66666666666 8 8 99999 0 0 7777 33333 6 6 111 6 6 3 2 44 5 1111111 66666666 6 1111111 5 777 5 5 8 111111111 5 1 5 8 2 00 0 5 88 6 00000 0 5 33 0 9999999999 111 6 777777 6 666666666666 3 4444444 6 111 2222222222222 000 3 88 0000000000000000000000 111 6 00 55 8 3 4 66 8888888888888888 22 8888888 000 00 66 8 4 8 66 4 8 8 4 1 666 000 3 0 0 5
lowQualScore : ... .. . . . . ..... . ... ....... ... . .... . . . . .. .......... . .... . ........ . ................ . .. .. .. . .... . . ....... .. . . . . . . .... ... ......... . . . . . ... .. .... . . . . .. .... ..... .. . . .. . ................. ............... . . .. .................................................... . ..... . .. .. ........ . ..... .. . .... ... . . ... ................. . .. .. . . . .. . .......... .. . . ........... .. . . . ... . ........... .. . ... .. . ..... . .. . . ........... . . ..... . . .... ..... . . ... . . . . .. . ....... ........ . ....... . ... . . . ......... . . . . . .. . . .. . ..... . . .. . .......... ... . ...... . ............ . ....... . ... ............. ... . .. ...................... ... . .. .. . . . .. ................ .. ....... ... .. .. . . . .. . . . . . ... ... . . . .
lowQualScore : 888 22 0 3 7 7 00000 2 222 3333333 555 5 5555 3 5 2 5 55 5555555555 7 2222 7 22222222 2 0000000000000000 7 77 00 55 7 5555 7 0 2222222 88 0 8 2 7 7 7 2222 777 666666666 7 7 4 7 4 777 55 2222 3 7 7 3 33 2222 55555 22 2 7 88 5 33333333333333333 000000000000000 4 8 66 0000000000000000000000000000000000000000000000000000 2 77777 7 00 22 00000000 7 77777 99 7 1111 000 4 6 777 44444444444444444 7 99 11 6 0 1 99 7 1111111111 77 3 3 66666666666 33 7 7 7 000 4 55555555555 22 5 777 00 0 00000 8 88 0 0 66666666666 0 0 66666 8 8 4444 77777 7 7 777 7 7 2 5 00 5 7777777 00000000 7 7777777 0 555 0 0 7 111111111 0 4 7 8 5 22 0 0 22 5 66666 0 0 88 0 8888888888 777 7 555555 7 000000000000 5 8888888 7 777 0000000000000 000 7 22 5555555555555555555555 777 7 77 44 9 3 4 11 2222222222222222 22 7777777 000 99 11 9 4 9 11 8 9 0 0 1 000 888 2 8 8 5
consensus : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA-G---CTTTTTTAAACANCA---TG--TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACCTTAACATGT-C-CCTCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGAA-GGAAC-ATG-GTGC-AAAAAAGGCAG-AC-AAATATTACAA-CCAGAGGGTT--TGCTGATTCAACTTGTCCTAAAGACCTTGAC-T-GTGT-TTGAA-T-GCAG-ATA-GACCA-G-TT-CA-CCACA-ATG---AAATTCT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATTTCTTTACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TCA-TTGTCTATAT-GGAGAATGTCGCTTNCCTTTAG---AACT--CG-C-----TCGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATCAAGTT-CT-C---AAA-GT-ATGACTTTCATCCC-AATATTG-------GAG-ACGA-TATAATCCCCATA-------AG-GG---T-GA-GACTTTTAAT--TGTCA--GCAAA-TG-ACCACAACACCCTTAA-TTA-CG-CAA-TTATTGATTT-CTCCGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTAC-TACC----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CAC-GGTTAGG--AA----TGACA---CACAGGTCACAGGTTAATATTTTTAT-NTACTG-TT-AT-TACG--G-A--------------TTT--TTTT---T---CGCCACTT---AGA-TTTTTTTT--TC-GC-CACTT-T--TGAATTTTTT-TT-C-GCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
Reference ( family-506 ) : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA-G---CTTTTTTAAACANCA---TG--TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACCTTAACATGT-C-CCTCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGAA-GGAAC-ATG-GTGC-AAAAAAGGCAG-AC-AAATATTACAA-CCAGAGGGTT--TGCTGATTCAACTTGTCCTAAAGACCTTGAC-T-GTAT-TTGAA-T-GCAG-ATA-GACCA-G-TT-CA-CCACA-ATG---AAATTCT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATTTCTTTACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TCA-TTGTCTATAT-GGAGAATGTCGCTTNCCTTTAG---AACT--CG-C-----TCGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATCAAGTT-CT-C---AAA-GT-ATGACTTTCATCCC-AATATTG-------GAG-ACGA-TATAATCCCCATA-------AG-GG---T-GA-GACTTTTAAT--TGTCA--GCAAA-TG-ACCACAACACCCTTAA-TTA-CG-CAA-TTATTGATTT-CTCCGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTAC-TACC----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CAC-GGTTAGG--AA----TGACA---CACAGGTCACAGGTTAATATTTTTAT-NTACTG-TT-AT-TACG--G-A--------------TTT--TTTT---T---CGCCACTT---AGA-TTTTTTTT--TC-GC-CACTT-T--TGAATTTTTT-TT-C-GCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
gi|1 : TCCCCT--GATCAGTAAAA--AAG-ACTACATAACTATA-GAATCGTTATTAATTATCAGTCTG--GTCAAAAA---T-AG-TA-CAT-GCC-TAACTGCCCCTGACCATTAC-TGT-CTCCTCAC-AAC-TCAA-TGTGT----ACAGACCTAAAAAGTG-GCTCTGAA-G-AACGATG-CTGCTAAAAAAGGCAG-ACCAAATA---CAA-CCC-AGGGTTGGCGCT-ATTCAACTTGTCT--AAGAC-TTGAC-T-G-GT-TGGAA-TTGCAGTATG-GTTCACG-TGGCA-CCACA-ATGCATAAAGTATGGGAAATGCTGACACATT-GAC-ATGGAAGACCTTCTTCGACAACATTGTTCTATTATGATTCAAG--ATTTCGAGATAACTTGACGAGTGGTGTGCATAACTAAGAAGTGTCAACTTACTGAAAA---------C-TTCAAAAG--------------------AAAT--G------GACT-GTG-----G-AGAGCAA-GGTATTTT-GTTTAGAATTTCTT-AC--AAG----TCAGT--GTTTG-C----AG---GTT-ACGTTGCCC-ATTTT---ACACATGAAATACCAAAAAGGCAGGAATAGTGTA--CATTGTAGAATAAAGGAATCATTATTT-TGAAACG-TAAT--------G-AGC--TTCAAAGAAATTTG-CGTAA-C---TGCTTTGCGAAGTGCATGATCAATAG-CAAGCTGACT---TCA-TTGTCTATA--GAAGGTTATCGCTTCCTTTTAGGCAAACTTCTG-CATATATCGAGATGGTGAAATTGAAG-ACGGCATATGTCCATACTAATA----CAATTCT-AATTGGT-TA----TTAAATTGAC---CAAGTT-CTCC---AAA-GT-ATGAC--TCATCCC-AATG-TG-------GAG--TGA-T-TAATCTCATTA-------AG-AG---G-GAGGACTTATAGCG-TGT----G-AAT-TG-TTCAT-ACACCCTTTA-ATA-CGCCAA-TGATTGTTTT-CT--AAAAACCCAAA-TGACCTGAGGGA--TA-C-TAATCTA-----C----AC---TAGTACCAGTGAC-CTGAGAT--CTGTGTGCACTGGAAGCGGCAGAGCTTGCGATAGTAATGATGTGCACCAAGTTTCTAGCGTCAACAGATGAGG-GAGAGCA--TAAAC-T-CA----TTGG---------TGACAAACCACA-GTCACAGGTT--TATTTCTATGTTACTGTTT-ATATACG--A-G--------------TTT--TTTT---T---CGCCACTGA--AGA-----TTTT--TC-GC-CACTT-TGATGTAATTTTT-TT-C-GCCATT---GCGCAA---ATGGCGACT-ACAGCTCGAGCCCT
gi|10 : ctcccactgaccaaatttcttttatcggggactactttattcgttggcaagcggcgaaaagacctggcaccgtattttatttcattgtcgtaggataccatggatgaataatgccatatttgtggaaagaaataaagtatttgaaaaagttttataaatgggtacaaaaaatatgttacttctataatttctatatggtctggaagaaagagcgtcttgcacaaaagcctgagatccaaaagacctacttaaaactgacaaaatatgagcatcG-GG---T-GA-GACTTT-AAT--TGTCAA-GCAAAATG-ACCACAACACCCCTAAAGTA-CG-CAA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTACC----AC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAAA----TGACA---CACAGGTCACAGGTTAATATTCTTAT-TTACTG-TT-AT-TACG--GTA--------------TTTGGTTTT---T---CGCCACTTTACAGA-TTTTTTTG--TCGGC-CACTT-T--TGAATTTTTTCTT-C-GCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGagt
gi|13 : CCCTTAA-TTA-CG-CAA-TTATTGATTT--TCTGTAAACCCA--------------------CTTAATCTAC----C----AC---TAGTACCAGTTAC-CTGAGAT--CTGTGTGCACT-GAAGCGA-------T----TAG-AA------ACACC-AAGTT---GC----AC-------G-A---GCA---AAA----------TTA------------ACA---CACA-GTCACAGGTT-ATATTTCTAT-GTACTGTTT-AT-TACG--G-A--------------TTT--TTTT---T---C-CCA------------------------C-CACTT-T--GGAA-TTTTT-TT-C-ACCATT-G-TTGCAA---ATGGCGACTCACAGCTCGAGCCCTGct
gi|14 : cAA---------C-AT--ACAG--------------------AAACTTGTAAAAAGAAATGTGTTGGTGGTGAGCAA-GTGGCTAT-GC--AGGATTT--TTACCAAA----ATCAGT--ATCTG-CCAGTAA---GTTTACGATTCCCCATTTTGACACACATCA------------------------------TTGTAGAAT-----AATTATTTCTA-TGGAACG-CATT--------G-AGT--TTCAAAGAAATGTGTT-T-ATT---TCCTCTGTGATATGCAT-ATCAATAA-C-GGTTTACT---TTA-TTGT
gi|15 : TGTTCTCCT--TATCAGT-AAA-CAAG-ATT
gi|16 : cactgttgaaaccaaaaattctttttcgcacacttttcgagcgacgaaaaaccacaaaaccctatttttcagttatatccatgtaatgctatagttgtggaaaagaataaaaagtttcaagtaaatttgaaaagtttaaataaattacaaataaattaATAATTTTAT-GTAATG-TTTAT-TACG--G-AAGAAAGAAAGATTTTTT--TTTTGTCT---TGCCACTT---AAAATTTTTTTT--TC-GC-CACTTCT--TGAATTTTTT-TCGT-GCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTG
gi|17 : ttATAATTTTAT-GTAATG-TTTAT-TACG--G-AAGAAAGAAAGATTTTTT--TTTTGTCT---TGCCACTT---AAAATTTTTTTT--TC-GC-CACTTCT--TGAATTTTTT-TCGT-GCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTGtt
gi|18 : ttATTTTTAT-GTACTA-TTTAT-TACG--A-AAAAAAAA-------TTT--G-----------GCCACTT---TGA-ATTTTTTT--TC-GC-CACTT-T--CAAA-TTTTT-TT-C-GCCATT-G-GCGCAA---ATGGCGACTCACAGCTCGAGCCCtt
gi|19 : gaaaattgaacacaaaaaccTCTCCCA-TATCAATAAAA-CAAG-ACTGCA-AAC
gi|2 : caaggaatattgttaacagacgcctgaggatgaaaaatccattctcatagctgacaaaatatgaaca--GCAG-AATGGTGTA--CATTGTAGA-CTATAAAAT-ATTATTT-CGAAACGGCAAA--------T-GAT--TTCAAAGAAATTTG-CCT-A-CACCTGCTTTGCGA-GTGCAT-CTCAATAGGC-GGCTGACTAATTCA-TTATTCA-AT-GCA---TGTCTCTTA---TTAT---AAAT--CATC-----TC--AA-----------AAACA----------------T-ATAGAG-ATGACCTAAATTTGTGTG--TATTTAATTGACATT---GTTTCT-CCAAAAACGT-ATGA--TTAATCCCGAATATTAATGGCATGAA-ATGAATACAATCCCCACATACAGCCAG-GC---TCAA-GACCTTAACTCCTGTGA--GCAAA-TG-ACCACAATGCC-TTAA-TTA-CG-CAAATTATTGATTT-C-CTGTAT-TCCAAA-TGACCTGA-GGA--TA-CTAAGTATAT-TGCCCTCCACCCATAGTAACAGTTAC-CTGAG--TCTTGTGT-CACT-GAAGCGA------AT----TAGAAA-------CACC-ATTTT---GT----AT-------G-A-GCGCAGTTAAACAAACAC-GGT--GG--AAAACTTGACA---CACAGTCCACAGGTTA-----------CTACT--TT-AT-TACGTAG-A--------------TTT--TTTT---TTTTCGCCACTG---AGA-TTTTTTTTCGTC-CC-CCCTT-T--GAAATTTCTT-TT-C-GCCATT-G-ACGCAA---ATGGCGACTCACA-CTCGAGCCCTGATATAT
gi|20 : CAG--TA-GAC-A-G-TT-CA-CCACA-ATG---AAAT-AT----AATGCTGAC-C-TTTGATAA-G----ACCTT----GACAACATTG--CTAATG-TATTCAAGGCATC-TGAACT-A----------AGTGTGTG------------Gatttcgcttctcaacatatacccacagtctaaacctttaattttctatttactctgtgctgcgtcgatctactaccaagggagatatttctatcttccttcgacttatagccttgaatgacttgcgcgagctaaaaacatatcacgaagcgacatgagagcaagacccaacggttcttgttccttaggaatatgtaactaataccgcatcaaattgaataaacatttcaaaagactactaagtgtgttgtcgcctaagaagagcaactcgaaactcaaatttaacggaaacaaaattgtatcgtgaaagattcgcactcggtcgttttaaaaataaaacatttggcatttaaaagtccacgccttatccacacggcacgcaacactcttcagaggaggaacccgaggcgcaaacttaacg
gi|23 : TAATTGAC---CAAGTT-CT-C---AAA-GTAATGACTTT-ATCCC-AATA-TG-------GAG-ACG---ATAAT-CCCATA-------TGAGG---T-GA-GACTT
gi|25 : CAGT--ATTTA-C----AG---ATTTACGTTTCCCCATGTT-G-ACACATCAAATA
gi|27 : -C-GCCATT-G-GCGCAAATG---GCGACTCACAGCTCGA
gi|3 : TGTTCTCCT--TATCAGTAAA--CAAG-ATTACA-AACTGTAAG---CCTTTTTAAA--ACA---T---TTCAAAAA---TTAGCTAACAT-GCCCTAAC-GCCT-TCACCTTAAC-TGT-C-CCTCACCAACCTCAAATGTGT----ACAGACCTAAAAGTTG-ACTCTGAA-GGAAC-ATG-GT-------AAGTCAG-AC-AAAT--TACAA-CTAGGG------TGCTC-TTCAACTTGTCT--AAGCCCTTGACCT-GT----TGA--T-GCAA-GTA-GACCA-G-TTTCA-CCA-A-ATA---AAAT-CT----AACACTGCC-C-TTTGAT-ATG----ACCTT----GACAACACTG--CTAATGTTTT-CAAG--G-CTTG------------------TG-GCA---------------ATCA-GCTATGAA---------C-AT--ACAG--------------------AAACTGG------GGCTTGTG-----GGAGAGCAAAGTGATTTTTGC--AGAACTCCTTCACCAAAG----TCAGTTAATTTA-C----AG---GTTTACGTTTCCCCATTTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTAACCATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGC--TTCAAA--------------------GCTTTGTGATGTGCAT-ATCAATAG-C-G--TGACT---TCA-TTGTCTAT-----AGCAT-TTTCTT-CCTTTAA---AAAT--CG-C-----TTGG-AT-GT-ATATTGAAA-AGTG------TTCA-ACT-ATTG-----AGTCTAAA--GGAGTAA----TTAATTGACAACC---TT-CT-C---AAA-GT-ATGACTTTCATCCC-AATA-TG-------GAGAACGA-T-TAAT--CCATA-------AG-GG---T-GC-GACTTTTCAT--TGTCATGGTAAA-TGAACCACAACA-CCTTAC-TTA-TG-CAA-TTATTGA--T-CTTGGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTA--TACC----AC---TAGTACC-GTTACGCTGAGATTCTTGTGTGCACT-GAAGCGA-------T----TAGAAA------CAACG-AAGTT---GC----AC-------GCAGGCATGGCCTAACA-------GTTAAC--AACC--TGACA---CACAGATCA-----TATTGTACTGGT-ATACTA-GT-AT-T-CA--G-A--------------TTT--TTTT---C---CGCCACTT---AGA-TTTTTTTT--TC-GCACACTT-T--TGAATTTTTT-TT-CAGCCA-T-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGAT-TATa
gi|4 : TCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA-G---CTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACCTTAAAATGT----------AGCCT---GTGTAT---TACA-ACCTAAAGG----------------AC-ATA-GTGC-AAAAAAAGCAC--C-AAATATTAAAA-CCAGAGGGTT---GCTGATTCAACTTGTCCTAAAGACTTTGAC-T-GTAT-TTGAA-T-GCAG-ATACGAC-A-G-TT-CA-CCACACATG---AAATTCT----AACGC--AC-C-TT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAAATTTG-C-T-AAC---TGCTTTGCGAT-TATAT-ATCAATAG-C-GGCCGACT---TTATTTGTCTATATAGGAAAAT-TTGCTTGCCTTTAG---AACT--CG-C-----TTGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATT-CT-C---ATA-AT-TTGACTTTCAACCC--ATATTG-------GAG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GA-GACTTTTAAT----TCA--GC-AA-TG-ACCACAAAA---TTAATTTATTG-CAA--TATTG-TTT-CT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAt
gi|5 : atgagcgaTCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA-G---CTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACCTTAAAATGT----------AGCCT---GTGTAT---TACA-ACCTAAAGG----------------AC-ATA-GTGC-AAAAAAAGCAC--C-AAATATTAAAA-CCAGAGGGTT---GCTGATTCAACTTGTCCTAAAGACTTTGAC-T-GTAT-TTGAA-T-GCAG-ATACGAC-A-G-TT-CA-CCACACATG---AAATTCT----AACGC--AC-C-TT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAAATTTG-C-T-AAC---TGCTTTGCGAT-TATAT-ATCAATAG-C-GGCCGACT---TTATTTGTCTATATAGGAAAAT-TTGCTTGCCTTTAG---AACT--CG-C-----TTGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATT-CT-C---ATA-AT-TTGACTTTCAACCC--ATATTG-------GAG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GA-GACTTTTAAT----TCA--GC-AA-TG-ACCACAAAA---TTAATTTATTG-CAA--TATTG-TTT-CT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAaagtaa
gi|7 : atgagcgaTCACCA--TATCAATAAA--CAAG-ACTGCA-AACTA---G---TC-------ATACCAG--TT--TTCCAAAAA--TGAGATA-CAT-GCCCTAACTGCCTCTGACCTCACTAGGTGA-CCTTGC-AA-CTCATATGCGTACATATA-ATC--ACAGTTATGTTCTGGATGGAGC-ATG-ATGC--AGAAAGGCAG-GC-AA--ATTACAG-ACAAAGG--T--TGTT-ATTCAACTTGT-CTACA-ACCTTGAC-T-G----TTGAA-A-GCAG-AT---GTTA-G-TT-CA-CCTCA-ATA---AAA-TCT----AACTCTGAT-C-TT-GA-TATG----ACATT----GTTAACATTG--TTATTGGTTTCAAAGC-ATCAT------A----------TGTGTGCA---------------AACATAC--AGAA---------CTGTA-ACAA--------------------GAAATGT------TGTTGGTA-----GGAGAGCAA-GTGGTTAT-GC--AGGAT---TTTAC--AAA---ATCAGT--ATCTGTC----AGTAAGTTTACGTTTCCCCAT-TTCG-ACACATCA---------------------GT---------GTAGAA----AGAATTATTTTCTATGGAACG-CAAT--------G-AGT--TTCAAA-AAATGTGTT-T-ATT---TGCTCTGTGATGTGCAT-ATCAATAA-C-GGTCTACT---TTA-TTGTTTAT-----AGAATGTTTGTTTCCTTTAA---AAaagtaa
gi|8 : gcatcCCCTA--TACCATTAAAA-CAAG-ACT-CA-AACTTCACG---CTTTTT-AAAC--CA---CA--TTTGTAAAAAATGAGCTA-CAT-A--------G--TATG-CCTTAAC-TGT-C-C-TCAC-AAC-TCAAATG------------------AGTTG-GCTCTGAA-GAGAC-ATGCCTGC---AAAAGGCAGAAC-A---ATTACAATCCAGCGCG-T--TGCTA--TAAACTTGTTCCAAGG--CTCGAC-TCGTGTATAGAACT-GCG----A-AATCA-GTTT-CAGCCACA-
gi|9 : acaaataatgttcttgctataccccacaatctctatatttctcaagaaagatcttgtaaacttagctcgccctgaggatcaaaaacctacctctaagctgacaaaatatgacatctgacG-GG---T-GA-GACTTT-AAT--TGTCAA-GCAAAATG-ACCACAACACCCCTAAAGTA-CG-CAA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTACC----AC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAAA----TGACA---CACAGGTCACAGGTTAATATTCTTAT-TTACTG-TT-AT-TACG--GTA--------------TTTGGTTTT---T---CGCCACTTTACAGA-TTTTTTTG--TCGGC-CACTT-T--TGAATTTTTTCTT-C-GCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGcaaggagggttaaaaaataccgctgacagctattgagtatagaa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAAAAAAATTGTATCCGTTGAAAATTTCGAACTCGGTCGTTTTAAAAAAAAACACAGTTGGAGCATTTTAAAGTCCACAGCCTTATCCAATATTGCCACGCCGCACATTCCAAACACCACAAGGAAAACTTAACGTTGCAGATGAAGTTTGAGCAGGAGAAAGTTAACGAAAATTCGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCGGGATTCCCCTGTATTTTGAGTCTAAAGAAACCACATTTAAATCGCTTCCTGCAATGATTTCAAACTTAATTTATTTTTGACTAATTATTGTCAATACACCACCTTATAGACTTATTTTTCTTATAATTGGATAAAGCGACCAGAAAGTCTCCACGATTTTACTATATCTATGAAATAACTTTATTTACCGACTCTTTCATGCAACACCTTTAGGGAAATCACCATAGATTACATGCAACACCTTCTTTC
Unaligned ( gi|11 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|12 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|21 ): GTTCCCAGCCTGTCCCAAGTTTAATCATTCAAGATTTTTATTAACGCTGTTAACGATGGTTAATAGCAATGGTAAAGGATATATTTC
Unaligned ( gi|22 ): ATTTGAATAAATCATCTTATCATTTTTTTACGCAACACCTTTAAGGAAATTAACATTAGGCGTGCAACATCCTCTTTC
Unaligned ( gi|24 ): GCAACACTTTTAGGGATAATAGCAATAAATTGCAACACCTTCTTTC
Unaligned ( gi|26 ): ACTTGGCCTTATCAATTTCACAGCCTTGAGCAAATTTTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 1 11111 111 3333333 111 1111 1 11 4444444444 1111 22222222 3333333333333333 11 11 2222222 22 111111 111111111 1 1 111 11 1111 1 11 1111 22222 11 33333333333333333 444444444444444 4444444444444444444444444444444444444444444444444444 11111 11 22222222 33333 1111 111 222 22222222222222222 22 11 5555555555 11 44444444444 111 1 33333333333 111 11 22222 22222222222 11111 2222 11111 111 11 1 2222222 11111111 2222222 111 222222222 1 22 1 22222 1 11 1 2222222222 111 222222 333333333333 2222222 111 3333333333333 111 7777777777777777777777 111 11 1 6666666666666666 11 1111111 222 11 111 333 1
lowQualScore : 999 33 0 2 5 1 55555 3 000 5555555 777 2 2222 3 2 3 2 66 0000000000 6 3333 1 33333333 3 1111111111111111 6 77 88 66 6 4444 6 1 6666666 00 1 9 3 3 333333 7 888 888888888 5 5 1 5 1 111 00 4444 7 6 6 3 33 4444 11111 99 3 1 55 3 99999999999999999 555555555555555 1 0 44 1111111111111111111111111111111111111111111111111111 3 66666 6 44 99 00000000 6 11111 77 5 2222 000 8 6 333 22222222222222222 0 77 11 1 3 0 22 5 4444444444 55 4 1 66666666666 88 5 5 5 000 1 55555555555 33 7 111 11 8 00000 3 88 8 1 66666666666 8 8 99999 0 0 7777 33333 6 6 111 6 6 3 2 44 5 1111111 66666666 6 1111111 5 777 5 5 8 111111111 5 1 5 8 2 00 0 5 88 6 00000 0 5 33 0 9999999999 111 6 777777 6 666666666666 3 4444444 6 111 2222222222222 000 3 88 0000000000000000000000 111 6 00 55 8 3 4 66 8888888888888888 22 8888888 000 00 66 8 4 8 66 4 8 8 4 1 666 000 3 0 0 5
lowQualScore : ... .. . . . . ..... . ... ....... ... . .... . . . . .. .......... . .... . ........ . ................ . .. .. .. . .... . . ....... .. . . . . ...... . ... ......... . . . . . ... .. .... . . . . .. .... ..... .. . . .. . ................. ............... . . .. .................................................... . ..... . .. .. ........ . ..... .. . .... ... . . ... ................. . .. .. . . . .. . .......... .. . . ........... .. . . . ... . ........... .. . ... .. . ..... . .. . . ........... . . ..... . . .... ..... . . ... . . . . .. . ....... ........ . ....... . ... . . . ......... . . . . . .. . . .. . ..... . . .. . .......... ... . ...... . ............ . ....... . ... ............. ... . .. ...................... ... . .. .. . . . .. ................ .. ....... ... .. .. . . . .. . . . . . ... ... . . . .
lowQualScore : 888 22 0 3 7 7 00000 2 222 3333333 555 5 5555 3 5 2 5 55 5555555555 7 2222 7 22222222 2 0000000000000000 7 77 00 55 7 5555 7 0 2222222 88 0 8 2 7 555555 5 777 666666666 7 7 4 7 4 777 55 2222 3 7 7 3 33 2222 55555 22 2 7 88 5 33333333333333333 000000000000000 4 8 66 0000000000000000000000000000000000000000000000000000 2 77777 7 00 22 00000000 7 77777 99 7 1111 000 4 6 777 44444444444444444 7 99 11 6 0 1 99 7 1111111111 77 3 3 66666666666 33 7 7 7 000 4 55555555555 22 5 777 00 0 00000 8 88 0 0 66666666666 0 0 66666 8 8 4444 77777 7 7 777 7 7 2 5 00 5 7777777 00000000 7 7777777 0 555 0 0 7 111111111 0 4 7 8 5 22 0 0 22 5 66666 0 0 88 0 8888888888 777 7 555555 7 000000000000 5 8888888 7 777 0000000000000 000 7 22 5555555555555555555555 777 7 77 44 9 3 4 11 2222222222222222 22 7777777 000 99 11 9 4 9 11 8 9 0 0 1 000 888 2 8 8 5
consensus : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA-G---CTTTTTTAAACANCA---TG--TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACCTTAACATGT-C-CCTCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGAA-GGAAC-ATG-GTGC-AAAAAAGGCAG-AC-AAATATTACAA-CCAGAGGGTT--TGCTGATTCAACTTGTCCTAAAGACCTTGACT-GTGT-TTGAA-T-GCAG-ATA-GACCA-G-TT-CA-CCACA-ATG---AAATTCT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATTTCTTTACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TCA-TTGTCTATAT-GGAGAATGTCGCTTNCCTTTAG---AACT--CG-C-----TCGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATCAAGTT-CT-C---AAA-GT-ATGACTTTCATCCC-AATATTG-------GAG-ACGA-TATAATCCCCATA-------AG-GG---T-GA-GACTTTTAAT--TGTCA--GCAAA-TG-ACCACAACACCCTTAA-TTA-CG-CAA-TTATTGATTT-CTCCGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTAC-TACC----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CAC-GGTTAGG--AA----TGACA---CACAGGTCACAGGTTAATATTTTTAT-NTACTG-TT-AT-TACG--G-A--------------TTT--TTTT---T---CGCCACTT---AGA-TTTTTTTT--TC-GC-CACTT-T--TGAATTTTTT-TT-C-GCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
Reference ( family-506 ) : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA-G---CTTTTTTAAACANCA---TG--TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACCTTAACATGT-C-CCTCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGAA-GGAAC-ATG-GTGC-AAAAAAGGCAG-AC-AAATATTACAA-CCAGAGGGTT--TGCTGATTCAACTTGTCCTAAAGACCTTGACT-GTGT-TTGAA-T-GCAG-ATA-GACCA-G-TT-CA-CCACA-ATG---AAATTCT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATTTCTTTACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TCA-TTGTCTATAT-GGAGAATGTCGCTTNCCTTTAG---AACT--CG-C-----TCGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATCAAGTT-CT-C---AAA-GT-ATGACTTTCATCCC-AATATTG-------GAG-ACGA-TATAATCCCCATA-------AG-GG---T-GA-GACTTTTAAT--TGTCA--GCAAA-TG-ACCACAACACCCTTAA-TTA-CG-CAA-TTATTGATTT-CTCCGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTAC-TACC----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CAC-GGTTAGG--AA----TGACA---CACAGGTCACAGGTTAATATTTTTAT-NTACTG-TT-AT-TACG--G-A--------------TTT--TTTT---T---CGCCACTT---AGA-TTTTTTTT--TC-GC-CACTT-T--TGAATTTTTT-TT-C-GCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
gi|1 : TCCCCT--GATCAGTAAAA--AAG-ACTACATAACTATA-GAATCGTTATTAATTATCAGTCTG--GTCAAAAA---T-AG-TA-CAT-GCC-TAACTGCCCCTGACCATTAC-TGT-CTCCTCAC-AAC-TCAA-TGTGT----ACAGACCTAAAAAGTG-GCTCTGAA-G-AACGATG-CTGCTAAAAAAGGCAG-ACCAAATA---CAA-CCC-AGGGTTGGCGCT-ATTCAACTTGTCT--AAGAC-TTGACT-G-GT-TGGAA-TTGCAGTATG-GTTCACG-TGGCA-CCACA-ATGCATAAAGTATGGGAAATGCTGACACATT-GAC-ATGGAAGACCTTCTTCGACAACATTGTTCTATTATGATTCAAG--ATTTCGAGATAACTTGACGAGTGGTGTGCATAACTAAGAAGTGTCAACTTACTGAAAA---------C-TTCAAAAG--------------------AAAT--G------GACT-GTG-----G-AGAGCAA-GGTATTTT-GTTTAGAATTTCTT-AC--AAG----TCAGT--GTTTG-C----AG---GTT-ACGTTGCCC-ATTTT---ACACATGAAATACCAAAAAGGCAGGAATAGTGTA--CATTGTAGAATAAAGGAATCATTATTT-TGAAACG-TAAT--------G-AGC--TTCAAAGAAATTTG-CGTAA-C---TGCTTTGCGAAGTGCATGATCAATAG-CAAGCTGACT---TCA-TTGTCTATA--GAAGGTTATCGCTTCCTTTTAGGCAAACTTCTG-CATATATCGAGATGGTGAAATTGAAG-ACGGCATATGTCCATACTAATA----CAATTCT-AATTGGT-TA----TTAAATTGAC---CAAGTT-CTCC---AAA-GT-ATGAC--TCATCCC-AATG-TG-------GAG--TGA-T-TAATCTCATTA-------AG-AG---G-GAGGACTTATAGCG-TGT----G-AAT-TG-TTCAT-ACACCCTTTA-ATA-CGCCAA-TGATTGTTTT-CT--AAAAACCCAAA-TGACCTGAGGGA--TA-C-TAATCTA-----C----AC---TAGTACCAGTGAC-CTGAGAT--CTGTGTGCACTGGAAGCGGCAGAGCTTGCGATAGTAATGATGTGCACCAAGTTTCTAGCGTCAACAGATGAGG-GAGAGCA--TAAAC-T-CA----TTGG---------TGACAAACCACA-GTCACAGGTT--TATTTCTATGTTACTGTTT-ATATACG--A-G--------------TTT--TTTT---T---CGCCACTGA--AGA-----TTTT--TC-GC-CACTT-TGATGTAATTTTT-TT-C-GCCATT---GCGCAA---ATGGCGACT-ACAGCTCGAGCCCT
gi|10 : ctcccactgaccaaatttcttttatcggggactactttattcgttggcaagcggcgaaaagacctggcaccgtattttatttcattgtcgtaggataccatggatgaataatgccatatttgtggaaagaaataaagtatttgaaaaagttttataaatgggtacaaaaaatatgttacttctataatttctatatggtctggaagaaagagcgtcttgcacaaaagcctgagatccaaaagacctacttaaaactgacaaaatatgagcatcG-GG---T-GA-GACTTT-AAT--TGTCAA-GCAAAATG-ACCACAACACCCCTAAAGTA-CG-CAA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTACC----AC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAAA----TGACA---CACAGGTCACAGGTTAATATTCTTAT-TTACTG-TT-AT-TACG--GTA--------------TTTGGTTTT---T---CGCCACTTTACAGA-TTTTTTTG--TCGGC-CACTT-T--TGAATTTTTTCTT-C-GCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGagt
gi|13 : CCCTTAA-TTA-CG-CAA-TTATTGATTT--TCTGTAAACCCA--------------------CTTAATCTAC----C----AC---TAGTACCAGTTAC-CTGAGAT--CTGTGTGCACT-GAAGCGA-------T----TAG-AA------ACACC-AAGTT---GC----AC-------G-A---GCA---AAA----------TTA------------ACA---CACA-GTCACAGGTT-ATATTTCTAT-GTACTGTTT-AT-TACG--G-A--------------TTT--TTTT---T---C-CCA------------------------C-CACTT-T--GGAA-TTTTT-TT-C-ACCATT-G-TTGCAA---ATGGCGACTCACAGCTCGAGCCCTGct
gi|14 : cAA---------C-AT--ACAG--------------------AAACTTGTAAAAAGAAATGTGTTGGTGGTGAGCAA-GTGGCTAT-GC--AGGATTT--TTACCAAA----ATCAGT--ATCTG-CCAGTAA---GTTTACGATTCCCCATTTTGACACACATCA------------------------------TTGTAGAAT-----AATTATTTCTA-TGGAACG-CATT--------G-AGT--TTCAAAGAAATGTGTT-T-ATT---TCCTCTGTGATATGCAT-ATCAATAA-C-GGTTTACT---TTA-TTGT
gi|15 : TGTTCTCCT--TATCAGT-AAA-CAAG-ATT
gi|16 : cactgttgaaaccaaaaattctttttcgcacacttttcgagcgacgaaaaaccacaaaaccctatttttcagttatatccatgtaatgctatagttgtggaaaagaataaaaagtttcaagtaaatttgaaaagtttaaataaattacaaataaattaATAATTTTAT-GTAATG-TTTAT-TACG--G-AAGAAAGAAAGATTTTTT--TTTTGTCT---TGCCACTT---AAAATTTTTTTT--TC-GC-CACTTCT--TGAATTTTTT-TCGT-GCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTG
gi|17 : ttATAATTTTAT-GTAATG-TTTAT-TACG--G-AAGAAAGAAAGATTTTTT--TTTTGTCT---TGCCACTT---AAAATTTTTTTT--TC-GC-CACTTCT--TGAATTTTTT-TCGT-GCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTGtt
gi|18 : ttATTTTTAT-GTACTA-TTTAT-TACG--A-AAAAAAAA-------TTT--G-----------GCCACTT---TGA-ATTTTTTT--TC-GC-CACTT-T--CAAA-TTTTT-TT-C-GCCATT-G-GCGCAA---ATGGCGACTCACAGCTCGAGCCCtt
gi|19 : gaaaattgaacacaaaaaccTCTCCCA-TATCAATAAAA-CAAG-ACTGCA-AAC
gi|2 : caaggaatattgttaacagacgcctgaggatgaaaaatccattctcatagctgacaaaatatgaaca--GCAG-AATGGTGTA--CATTGTAGA-CTATAAAAT-ATTATTT-CGAAACGGCAAA--------T-GAT--TTCAAAGAAATTTG-CCT-A-CACCTGCTTTGCGA-GTGCAT-CTCAATAGGC-GGCTGACTAATTCA-TTATTCA-AT-GCA---TGTCTCTTA---TTAT---AAAT--CATC-----TC--AA-----------AAACA----------------T-ATAGAG-ATGACCTAAATTTGTGTG--TATTTAATTGACATT---GTTTCT-CCAAAAACGT-ATGA--TTAATCCCGAATATTAATGGCATGAA-ATGAATACAATCCCCACATACAGCCAG-GC---TCAA-GACCTTAACTCCTGTGA--GCAAA-TG-ACCACAATGCC-TTAA-TTA-CG-CAAATTATTGATTT-C-CTGTAT-TCCAAA-TGACCTGA-GGA--TA-CTAAGTATAT-TGCCCTCCACCCATAGTAACAGTTAC-CTGAG--TCTTGTGT-CACT-GAAGCGA------AT----TAGAAA-------CACC-ATTTT---GT----AT-------G-A-GCGCAGTTAAACAAACAC-GGT--GG--AAAACTTGACA---CACAGTCCACAGGTTA-----------CTACT--TT-AT-TACGTAG-A--------------TTT--TTTT---TTTTCGCCACTG---AGA-TTTTTTTTCGTC-CC-CCCTT-T--GAAATTTCTT-TT-C-GCCATT-G-ACGCAA---ATGGCGACTCACA-CTCGAGCCCTGATATAT
gi|20 : CAG--TA-GAC-A-G-TT-CA-CCACA-ATG---AAAT-AT----AATGCTGAC-C-TTTGATAA-G----ACCTT----GACAACATTG--CTAATG-TATTCAAGGCATC-TGAACT-A----------AGTGTGTG------------Gatttcgcttctcaacatatacccacagtctaaacctttaattttctatttactctgtgctgcgtcgatctactaccaagggagatatttctatcttccttcgacttatagccttgaatgacttgcgcgagctaaaaacatatcacgaagcgacatgagagcaagacccaacggttcttgttccttaggaatatgtaactaataccgcatcaaattgaataaacatttcaaaagactactaagtgtgttgtcgcctaagaagagcaactcgaaactcaaatttaacggaaacaaaattgtatcgtgaaagattcgcactcggtcgttttaaaaataaaacatttggcatttaaaagtccacgccttatccacacggcacgcaacactcttcagaggaggaacccgaggcgcaaacttaacg
gi|23 : TAATTGAC---CAAGTT-CT-C---AAA-GTAATGACTTT-ATCCC-AATA-TG-------GAG-ACG---ATAAT-CCCATA-------TGAGG---T-GA-GACTT
gi|25 : CAGT--ATTTA-C----AG---ATTTACGTTTCCCCATGTT-G-ACACATCAAATA
gi|27 : -C-GCCATT-G-GCGCAAATG---GCGACTCACAGCTCGA
gi|3 : TGTTCTCCT--TATCAGTAAA--CAAG-ATTACA-AACTGTAAG---CCTTTTTAAA--ACA---T---TTCAAAAA---TTAGCTAACAT-GCCCTAAC-GCCT-TCACCTTAAC-TGT-C-CCTCACCAACCTCAAATGTGT----ACAGACCTAAAAGTTG-ACTCTGAA-GGAAC-ATG-GT-------AAGTCAG-AC-AAAT--TACAA-CTAGGG------TGCTC-TTCAACTTGTCT--AAGCCCTTGACC--TGT-T--GA-T-GCAA-GTA-GACCA-G-TTTCA-CCA-A-ATA---AAAT-CT----AACACTGCC-C-TTTGAT-ATG----ACCTT----GACAACACTG--CTAATGTTTT-CAAG--G-CTTG------------------TG-GCA---------------ATCA-GCTATGAA---------C-AT--ACAG--------------------AAACTGG------GGCTTGTG-----GGAGAGCAAAGTGATTTTTGC--AGAACTCCTTCACCAAAG----TCAGTTAATTTA-C----AG---GTTTACGTTTCCCCATTTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTAACCATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGC--TTCAAA--------------------GCTTTGTGATGTGCAT-ATCAATAG-C-G--TGACT---TCA-TTGTCTAT-----AGCAT-TTTCTT-CCTTTAA---AAAT--CG-C-----TTGG-AT-GT-ATATTGAAA-AGTG------TTCA-ACT-ATTG-----AGTCTAAA--GGAGTAA----TTAATTGACAACC---TT-CT-C---AAA-GT-ATGACTTTCATCCC-AATA-TG-------GAGAACGA-T-TAAT--CCATA-------AG-GG---T-GC-GACTTTTCAT--TGTCATGGTAAA-TGAACCACAACA-CCTTAC-TTA-TG-CAA-TTATTGA--T-CTTGGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTA--TACC----AC---TAGTACC-GTTACGCTGAGATTCTTGTGTGCACT-GAAGCGA-------T----TAGAAA------CAACG-AAGTT---GC----AC-------GCAGGCATGGCCTAACA-------GTTAAC--AACC--TGACA---CACAGATCA-----TATTGTACTGGT-ATACTA-GT-AT-T-CA--G-A--------------TTT--TTTT---C---CGCCACTT---AGA-TTTTTTTT--TC-GCACACTT-T--TGAATTTTTT-TT-CAGCCA-T-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGAT-TATa
gi|4 : TCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA-G---CTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACCTTAAAATGT----------AGCCT---GTGTAT---TACA-ACCTAAAGG----------------AC-ATA-GTGC-AAAAAAAGCAC--C-AAATATTAAAA-CCAGAGGGTT---GCTGATTCAACTTGTCCTAAAGACTTTGACT-GTAT-TTGAA-T-GCAG-ATACGAC-A-G-TT-CA-CCACACATG---AAATTCT----AACGC--AC-C-TT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAAATTTG-C-T-AAC---TGCTTTGCGAT-TATAT-ATCAATAG-C-GGCCGACT---TTATTTGTCTATATAGGAAAAT-TTGCTTGCCTTTAG---AACT--CG-C-----TTGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATT-CT-C---ATA-AT-TTGACTTTCAACCC--ATATTG-------GAG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GA-GACTTTTAAT----TCA--GC-AA-TG-ACCACAAAA---TTAATTTATTG-CAA--TATTG-TTT-CT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAt
gi|5 : atgagcgaTCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA-G---CTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACCTTAAAATGT----------AGCCT---GTGTAT---TACA-ACCTAAAGG----------------AC-ATA-GTGC-AAAAAAAGCAC--C-AAATATTAAAA-CCAGAGGGTT---GCTGATTCAACTTGTCCTAAAGACTTTGACT-GTAT-TTGAA-T-GCAG-ATACGAC-A-G-TT-CA-CCACACATG---AAATTCT----AACGC--AC-C-TT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAAATTTG-C-T-AAC---TGCTTTGCGAT-TATAT-ATCAATAG-C-GGCCGACT---TTATTTGTCTATATAGGAAAAT-TTGCTTGCCTTTAG---AACT--CG-C-----TTGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATT-CT-C---ATA-AT-TTGACTTTCAACCC--ATATTG-------GAG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GA-GACTTTTAAT----TCA--GC-AA-TG-ACCACAAAA---TTAATTTATTG-CAA--TATTG-TTT-CT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAaagtaa
gi|7 : atgagcgaTCACCA--TATCAATAAA--CAAG-ACTGCA-AACTA---G---TC-------ATACCAG--TT--TTCCAAAAA--TGAGATA-CAT-GCCCTAACTGCCTCTGACCTCACTAGGTGA-CCTTGC-AA-CTCATATGCGTACATATA-ATC--ACAGTTATGTTCTGGATGGAGC-ATG-ATGC--AGAAAGGCAG-GC-AA--ATTACAG-ACAAAGG--T--TGTT-ATTCAACTTGT-CTACA-ACCTTGACT-G----TTGAA-A-GCAG-AT---GTTA-G-TT-CA-CCTCA-ATA---AAA-TCT----AACTCTGAT-C-TT-GA-TATG----ACATT----GTTAACATTG--TTATTGGTTTCAAAGC-ATCAT------A----------TGTGTGCA---------------AACATAC--AGAA---------CTGTA-ACAA--------------------GAAATGT------TGTTGGTA-----GGAGAGCAA-GTGGTTAT-GC--AGGAT---TTTAC--AAA---ATCAGT--ATCTGTC----AGTAAGTTTACGTTTCCCCAT-TTCG-ACACATCA---------------------GT---------GTAGAA----AGAATTATTTTCTATGGAACG-CAAT--------G-AGT--TTCAAA-AAATGTGTT-T-ATT---TGCTCTGTGATGTGCAT-ATCAATAA-C-GGTCTACT---TTA-TTGTTTAT-----AGAATGTTTGTTTCCTTTAA---AAaagtaa
gi|8 : gcatcCCCTA--TACCATTAAAA-CAAG-ACT-CA-AACTTCACG---CTTTTT-AAAC--CA---CA--TTTGTAAAAAATGAGCTA-CAT-A--------G--TATG-CCTTAAC-TGT-C-C-TCAC-AAC-TCAAATG------------------AGTTG-GCTCTGAA-GAGAC-ATGCCTGC---AAAAGGCAGAAC-A---ATTACAATCCAGCGCG-T--TGCTA--TAAACTTGTTCCAAGG--CTCGACTCGTGTATAGAACT-GCG----A-AATCA-GTTT-CAGCCACA-
gi|9 : acaaataatgttcttgctataccccacaatctctatatttctcaagaaagatcttgtaaacttagctcgccctgaggatcaaaaacctacctctaagctgacaaaatatgacatctgacG-GG---T-GA-GACTTT-AAT--TGTCAA-GCAAAATG-ACCACAACACCCCTAAAGTA-CG-CAA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTACC----AC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAAA----TGACA---CACAGGTCACAGGTTAATATTCTTAT-TTACTG-TT-AT-TACG--GTA--------------TTTGGTTTT---T---CGCCACTTTACAGA-TTTTTTTG--TCGGC-CACTT-T--TGAATTTTTTCTT-C-GCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGcaaggagggttaaaaaataccgctgacagctattgagtatagaa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAAAAAAATTGTATCCGTTGAAAATTTCGAACTCGGTCGTTTTAAAAAAAAACACAGTTGGAGCATTTTAAAGTCCACAGCCTTATCCAATATTGCCACGCCGCACATTCCAAACACCACAAGGAAAACTTAACGTTGCAGATGAAGTTTGAGCAGGAGAAAGTTAACGAAAATTCGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCGGGATTCCCCTGTATTTTGAGTCTAAAGAAACCACATTTAAATCGCTTCCTGCAATGATTTCAAACTTAATTTATTTTTGACTAATTATTGTCAATACACCACCTTATAGACTTATTTTTCTTATAATTGGATAAAGCGACCAGAAAGTCTCCACGATTTTACTATATCTATGAAATAACTTTATTTACCGACTCTTTCATGCAACACCTTTAGGGAAATCACCATAGATTACATGCAACACCTTCTTTC
Unaligned ( gi|11 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|12 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|21 ): GTTCCCAGCCTGTCCCAAGTTTAATCATTCAAGATTTTTATTAACGCTGTTAACGATGGTTAATAGCAATGGTAAAGGATATATTTC
Unaligned ( gi|22 ): ATTTGAATAAATCATCTTATCATTTTTTTACGCAACACCTTTAAGGAAATTAACATTAGGCGTGCAACATCCTCTTTC
Unaligned ( gi|24 ): GCAACACTTTTAGGGATAATAGCAATAAATTGCAACACCTTCTTTC
Unaligned ( gi|26 ): ACTTGGCCTTATCAATTTCACAGCCTTGAGCAAATTTTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 1 11111 111 3333333 111 1111 1 11 4444444444 1111 22222222 3333333333333333 11 11 2222222 22 111111 111111111 1 1 111 11 1111 1 11 1111 22222 11 33333333333333333 444444444444444 4444444444444444444444444444444444444444444444444444 11111 11 22222222 33333 1111 111 222 22222222222222222 22 11 5555555555 11 44444444444 111 1 33333333333 111 11 22222 22222222222 11111 2222 11111 111 11 1 2222222 11111111 2222222 111 222222222 1 22 1 22222 1 11 1 2222222222 111 222222 333333333333 2222222 111 3333333333333 111 7777777777777777777777 111 11 1 6666666666666666 11 1111111 222 11 111 333 1
lowQualScore : 999 33 0 2 5 1 55555 3 000 5555555 777 2 2222 3 2 3 2 66 0000000000 6 3333 1 33333333 3 1111111111111111 6 77 88 66 6 4444 6 1 6666666 00 1 9 3 3 333333 7 888 888888888 5 5 1 5 1 111 00 4444 7 6 6 3 33 4444 11111 99 3 1 55 3 99999999999999999 555555555555555 1 0 44 1111111111111111111111111111111111111111111111111111 3 66666 6 44 99 00000000 6 11111 77 5 2222 000 8 6 333 22222222222222222 0 77 11 1 3 0 22 5 4444444444 55 4 1 66666666666 88 5 5 5 000 1 55555555555 33 7 111 11 8 00000 3 88 8 1 66666666666 8 8 99999 0 0 7777 33333 6 6 111 6 6 3 2 44 5 1111111 66666666 6 1111111 5 777 5 5 8 111111111 5 1 5 8 2 00 0 5 88 6 00000 0 5 33 0 9999999999 111 6 777777 6 666666666666 3 4444444 6 111 2222222222222 000 3 88 0000000000000000000000 111 6 00 55 8 3 4 66 8888888888888888 22 8888888 000 00 66 8 4 8 66 4 8 8 4 1 666 000 3 0 0 5
lowQualScore : ... .. . . . . ..... . ... ....... ... . .... . . . . .. .......... . .... . ........ . ................ . .. .. .. . .... . . ....... .. . . . . ...... . ... ......... . . . . . ... .. .... . . . . .. .... ..... .. . . .. . ................. ............... . . .. .................................................... . ..... . .. .. ........ . ..... .. . .... ... . . ... ................. . .. .. . . . .. . .......... .. . . ........... .. . . . ... . ........... .. . ... .. . ..... . .. . . ........... . . ..... . . .... ..... . . ... . . . . .. . ....... ........ . ....... . ... . . . ......... . . . . . .. . . .. . ..... . . .. . .......... ... . ...... . ............ . ....... . ... ............. ... . .. ...................... ... . .. .. . . . .. ................ .. ....... ... .. .. . . . .. . . . . . ... ... . . . .
lowQualScore : 888 22 0 3 7 7 00000 2 222 3333333 555 5 5555 3 5 2 5 55 5555555555 7 2222 7 22222222 2 0000000000000000 7 77 00 55 7 5555 7 0 2222222 88 0 8 2 7 555555 5 777 666666666 7 7 4 7 4 777 55 2222 3 7 7 3 33 2222 55555 22 2 7 88 5 33333333333333333 000000000000000 4 8 66 0000000000000000000000000000000000000000000000000000 2 77777 7 00 22 00000000 7 77777 99 7 1111 000 4 6 777 44444444444444444 7 99 11 6 0 1 99 7 1111111111 77 3 3 66666666666 33 7 7 7 000 4 55555555555 22 5 777 00 0 00000 8 88 0 0 66666666666 0 0 66666 8 8 4444 77777 7 7 777 7 7 2 5 00 5 7777777 00000000 7 7777777 0 555 0 0 7 111111111 0 4 7 8 5 22 0 0 22 5 66666 0 0 88 0 8888888888 777 7 555555 7 000000000000 5 8888888 7 777 0000000000000 000 7 22 5555555555555555555555 777 7 77 44 9 3 4 11 2222222222222222 22 7777777 000 99 11 9 4 9 11 8 9 0 0 1 000 888 2 8 8 5
consensus : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA-G---CTTTTTTAAACANCA---TG--TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACCTTAACATGT-C-CCTCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGAA-GGAAC-ATG-GTGC-AAAAAAGGCAG-AC-AAATATTACAA-CCAGAGGGTT--TGCTGATTCAACTTGTCCTAAAGACCTTGACT-GTGT-TTGAA-T-GCAG-ATA-GACCA-G-TT-CA-CCACA-ATG---AAATTCT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATTTCTTTACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TCA-TTGTCTATAT-GGAGAATGTCGCTTNCCTTTAG---AACT--CG-C-----TCGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATCAAGTT-CT-C---AAA-GT-ATGACTTTCATCCC-AATATTG-------GAG-ACGA-TATAATCCCCATA-------AG-GG---T-GA-GACTTTTAAT--TGTCA--GCAAA-TG-ACCACAACACCCTTAA-TTA-CG-CAA-TTATTGATTT-CTCCGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTAC-TACC----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CAC-GGTTAGG--AA----TGACA---CACAGGTCACAGGTTAATATTTTTAT-NTACTG-TT-AT-TACG--G-A--------------TTT--TTTT---T---CGCCACTT---AGA-TTTTTTTT--TC-GC-CACTT-T--TGAATTTTTT-TT-C-GCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
Reference ( family-506 ) : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA-G---CTTTTTTAAACANCA---TG--TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACCTTAACATGT-C-CCTCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGAA-GGAAC-ATG-GTGC-AAAAAAGGCAG-AC-AAATATTACAA-CCAGAGGGTT--TGCTGATTCAACTTGTCCTAAAGACCTTGACT-GTGT-TTGAA-T-GCAG-ATA-GACCA-G-TT-CA-CCACA-ATG---AAATTCT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATTTCTTTACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TCA-TTGTCTATAT-GGAGAATGTCGCTTNCCTTTAG---AACT--CG-C-----TCGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATCAAGTT-CT-C---AAA-GT-ATGACTTTCATCCC-AATATTG-------GAG-ACGA-TATAATCCCCATA-------AG-GG---T-GA-GACTTTTAAT--TGTCA--GCAAA-TG-ACCACAACACCCTTAA-TTA-CG-CAA-TTATTGATTT-CTCCGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTAC-TACC----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CAC-GGTTAGG--AA----TGACA---CACAGGTCACAGGTTAATATTTTTAT-NTACTG-TT-AT-TACG--G-A--------------TTT--TTTT---T---CGCCACTT---AGA-TTTTTTTT--TC-GC-CACTT-T--TGAATTTTTT-TT-C-GCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
gi|1 : TCCCCT--GATCAGTAAAA--AAG-ACTACATAACTATA-GAATCGTTATTAATTATCAGTCTG--GTCAAAAA---T-AG-TA-CAT-GCC-TAACTGCCCCTGACCATTAC-TGT-CTCCTCAC-AAC-TCAA-TGTGT----ACAGACCTAAAAAGTG-GCTCTGAA-G-AACGATG-CTGCTAAAAAAGGCAG-ACCAAATA---CAA-CCC-AGGGTTGGCGCT-ATTCAACTTGTCT--AAGAC-TTGACT-G-GT-TGGAA-TTGCAGTATG-GTTCACG-TGGCA-CCACA-ATGCATAAAGTATGGGAAATGCTGACACATT-GAC-ATGGAAGACCTTCTTCGACAACATTGTTCTATTATGATTCAAG--ATTTCGAGATAACTTGACGAGTGGTGTGCATAACTAAGAAGTGTCAACTTACTGAAAA---------C-TTCAAAAG--------------------AAAT--G------GACT-GTG-----G-AGAGCAA-GGTATTTT-GTTTAGAATTTCTT-AC--AAG----TCAGT--GTTTG-C----AG---GTT-ACGTTGCCC-ATTTT---ACACATGAAATACCAAAAAGGCAGGAATAGTGTA--CATTGTAGAATAAAGGAATCATTATTT-TGAAACG-TAAT--------G-AGC--TTCAAAGAAATTTG-CGTAA-C---TGCTTTGCGAAGTGCATGATCAATAG-CAAGCTGACT---TCA-TTGTCTATA--GAAGGTTATCGCTTCCTTTTAGGCAAACTTCTG-CATATATCGAGATGGTGAAATTGAAG-ACGGCATATGTCCATACTAATA----CAATTCT-AATTGGT-TA----TTAAATTGAC---CAAGTT-CTCC---AAA-GT-ATGAC--TCATCCC-AATG-TG-------GAG--TGA-T-TAATCTCATTA-------AG-AG---G-GAGGACTTATAGCG-TGT----G-AAT-TG-TTCAT-ACACCCTTTA-ATA-CGCCAA-TGATTGTTTT-CT--AAAAACCCAAA-TGACCTGAGGGA--TA-C-TAATCTA-----C----AC---TAGTACCAGTGAC-CTGAGAT--CTGTGTGCACTGGAAGCGGCAGAGCTTGCGATAGTAATGATGTGCACCAAGTTTCTAGCGTCAACAGATGAGG-GAGAGCA--TAAAC-T-CA----TTGG---------TGACAAACCACA-GTCACAGGTT--TATTTCTATGTTACTGTTT-ATATACG--A-G--------------TTT--TTTT---T---CGCCACTGA--AGA-----TTTT--TC-GC-CACTT-TGATGTAATTTTT-TT-C-GCCATT---GCGCAA---ATGGCGACT-ACAGCTCGAGCCCT
gi|10 : ctcccactgaccaaatttcttttatcggggactactttattcgttggcaagcggcgaaaagacctggcaccgtattttatttcattgtcgtaggataccatggatgaataatgccatatttgtggaaagaaataaagtatttgaaaaagttttataaatgggtacaaaaaatatgttacttctataatttctatatggtctggaagaaagagcgtcttgcacaaaagcctgagatccaaaagacctacttaaaactgacaaaatatgagcatcG-GG---T-GA-GACTTT-AAT--TGTCAA-GCAAAATG-ACCACAACACCCCTAAAGTA-CG-CAA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTACC----AC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAAA----TGACA---CACAGGTCACAGGTTAATATTCTTAT-TTACTG-TT-AT-TACG--GTA--------------TTTGGTTTT---T---CGCCACTTTACAGA-TTTTTTTG--TCGGC-CACTT-T--TGAATTTTTTCTT-C-GCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGagt
gi|13 : CCCTTAA-TTA-CG-CAA-TTATTGATTT--TCTGTAAACCCA--------------------CTTAATCTAC----C----AC---TAGTACCAGTTAC-CTGAGAT--CTGTGTGCACT-GAAGCGA-------T----TAG-AA------ACACC-AAGTT---GC----AC-------G-A---GCA---AAA----------TTA------------ACA---CACA-GTCACAGGTT-ATATTTCTAT-GTACTGTTT-AT-TACG--G-A--------------TTT--TTTT---T---C-CCA------------------------C-CACTT-T--GGAA-TTTTT-TT-C-ACCATT-G-TTGCAA---ATGGCGACTCACAGCTCGAGCCCTGct
gi|14 : cAA---------C-AT--ACAG--------------------AAACTTGTAAAAAGAAATGTGTTGGTGGTGAGCAA-GTGGCTAT-GC--AGGATTT--TTACCAAA----ATCAGT--ATCTG-CCAGTAA---GTTTACGATTCCCCATTTTGACACACATCA------------------------------TTGTAGAAT-----AATTATTTCTA-TGGAACG-CATT--------G-AGT--TTCAAAGAAATGTGTT-T-ATT---TCCTCTGTGATATGCAT-ATCAATAA-C-GGTTTACT---TTA-TTGT
gi|15 : TGTTCTCCT--TATCAGT-AAA-CAAG-ATT
gi|16 : cactgttgaaaccaaaaattctttttcgcacacttttcgagcgacgaaaaaccacaaaaccctatttttcagttatatccatgtaatgctatagttgtggaaaagaataaaaagtttcaagtaaatttgaaaagtttaaataaattacaaataaattaATAATTTTAT-GTAATG-TTTAT-TACG--G-AAGAAAGAAAGATTTTTT--TTTTGTCT---TGCCACTT---AAAATTTTTTTT--TC-GC-CACTTCT--TGAATTTTTT-TCGT-GCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTG
gi|17 : ttATAATTTTAT-GTAATG-TTTAT-TACG--G-AAGAAAGAAAGATTTTTT--TTTTGTCT---TGCCACTT---AAAATTTTTTTT--TC-GC-CACTTCT--TGAATTTTTT-TCGT-GCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTGtt
gi|18 : ttATTTTTAT-GTACTA-TTTAT-TACG--A-AAAAAAAA-------TTT--G-----------GCCACTT---TGA-ATTTTTTT--TC-GC-CACTT-T--CAAA-TTTTT-TT-C-GCCATT-G-GCGCAA---ATGGCGACTCACAGCTCGAGCCCtt
gi|19 : gaaaattgaacacaaaaaccTCTCCCA-TATCAATAAAA-CAAG-ACTGCA-AAC
gi|2 : caaggaatattgttaacagacgcctgaggatgaaaaatccattctcatagctgacaaaatatgaaca--GCAG-AATGGTGTA--CATTGTAGA-CTATAAAAT-ATTATTT-CGAAACGGCAAA--------T-GAT--TTCAAAGAAATTTG-CCT-A-CACCTGCTTTGCGA-GTGCAT-CTCAATAGGC-GGCTGACTAATTCA-TTATTCA-AT-GCA---TGTCTCTTA---TTAT---AAAT--CATC-----TC--AA-----------AAACA----------------T-ATAGAG-ATGACCTAAATTTGTGTG--TATTTAATTGACATT---GTTTCT-CCAAAAACGT-ATGA--TTAATCCCGAATATTAATGGCATGAA-ATGAATACAATCCCCACATACAGCCAG-GC---TCAA-GACCTTAACTCCTGTGA--GCAAA-TG-ACCACAATGCC-TTAA-TTA-CG-CAAATTATTGATTT-C-CTGTAT-TCCAAA-TGACCTGA-GGA--TA-CTAAGTATAT-TGCCCTCCACCCATAGTAACAGTTAC-CTGAG--TCTTGTGT-CACT-GAAGCGA------AT----TAGAAA-------CACC-ATTTT---GT----AT-------G-A-GCGCAGTTAAACAAACAC-GGT--GG--AAAACTTGACA---CACAGTCCACAGGTTA-----------CTACT--TT-AT-TACGTAG-A--------------TTT--TTTT---TTTTCGCCACTG---AGA-TTTTTTTTCGTC-CC-CCCTT-T--GAAATTTCTT-TT-C-GCCATT-G-ACGCAA---ATGGCGACTCACA-CTCGAGCCCTGATATAT
gi|20 : CAG--TA-GAC-A-G-TT-CA-CCACA-ATG---AAAT-AT----AATGCTGAC-C-TTTGATAA-G----ACCTT----GACAACATTG--CTAATG-TATTCAAGGCATC-TGAACT-A----------AGTGTGTG------------Gatttcgcttctcaacatatacccacagtctaaacctttaattttctatttactctgtgctgcgtcgatctactaccaagggagatatttctatcttccttcgacttatagccttgaatgacttgcgcgagctaaaaacatatcacgaagcgacatgagagcaagacccaacggttcttgttccttaggaatatgtaactaataccgcatcaaattgaataaacatttcaaaagactactaagtgtgttgtcgcctaagaagagcaactcgaaactcaaatttaacggaaacaaaattgtatcgtgaaagattcgcactcggtcgttttaaaaataaaacatttggcatttaaaagtccacgccttatccacacggcacgcaacactcttcagaggaggaacccgaggcgcaaacttaacg
gi|23 : TAATTGAC---CAAGTT-CT-C---AAA-GTAATGACTTT-ATCCC-AATA-TG-------GAG-ACG---ATAAT-CCCATA-------TGAGG---T-GA-GACTT
gi|25 : CAGT--ATTTA-C----AG---ATTTACGTTTCCCCATGTT-G-ACACATCAAATA
gi|27 : -C-GCCATT-G-GCGCAAATG---GCGACTCACAGCTCGA
gi|3 : TGTTCTCCT--TATCAGTAAA--CAAG-ATTACA-AACTGTAAG---CCTTTTTAAA--ACA---T---TTCAAAAA---TTAGCTAACAT-GCCCTAAC-GCCT-TCACCTTAAC-TGT-C-CCTCACCAACCTCAAATGTGT----ACAGACCTAAAAGTTG-ACTCTGAA-GGAAC-ATG-GT-------AAGTCAG-AC-AAAT--TACAA-CTAGGG------TGCTC-TTCAACTTGTCT--AAGCCCTTGACC--TGT-T--GA-T-GCAA-GTA-GACCA-G-TTTCA-CCA-A-ATA---AAAT-CT----AACACTGCC-C-TTTGAT-ATG----ACCTT----GACAACACTG--CTAATGTTTT-CAAG--G-CTTG------------------TG-GCA---------------ATCA-GCTATGAA---------C-AT--ACAG--------------------AAACTGG------GGCTTGTG-----GGAGAGCAAAGTGATTTTTGC--AGAACTCCTTCACCAAAG----TCAGTTAATTTA-C----AG---GTTTACGTTTCCCCATTTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTAACCATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGC--TTCAAA--------------------GCTTTGTGATGTGCAT-ATCAATAG-C-G--TGACT---TCA-TTGTCTAT-----AGCAT-TTTCTT-CCTTTAA---AAAT--CG-C-----TTGG-AT-GT-ATATTGAAA-AGTG------TTCA-ACT-ATTG-----AGTCTAAA--GGAGTAA----TTAATTGACAACC---TT-CT-C---AAA-GT-ATGACTTTCATCCC-AATA-TG-------GAGAACGA-T-TAAT--CCATA-------AG-GG---T-GC-GACTTTTCAT--TGTCATGGTAAA-TGAACCACAACA-CCTTAC-TTA-TG-CAA-TTATTGA--T-CTTGGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTA--TACC----AC---TAGTACC-GTTACGCTGAGATTCTTGTGTGCACT-GAAGCGA-------T----TAGAAA------CAACG-AAGTT---GC----AC-------GCAGGCATGGCCTAACA-------GTTAAC--AACC--TGACA---CACAGATCA-----TATTGTACTGGT-ATACTA-GT-AT-T-CA--G-A--------------TTT--TTTT---C---CGCCACTT---AGA-TTTTTTTT--TC-GCACACTT-T--TGAATTTTTT-TT-CAGCCA-T-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGAT-TATa
gi|4 : TCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA-G---CTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACCTTAAAATGT----------AGCCT---GTGTAT---TACA-ACCTAAAGG----------------AC-ATA-GTGC-AAAAAAAGCAC--C-AAATATTAAAA-CCAGAGGGTT---GCTGATTCAACTTGTCCTAAAGACTTTGACT-GTAT-TTGAA-T-GCAG-ATACGAC-A-G-TT-CA-CCACACATG---AAATTCT----AACGC--AC-C-TT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAAATTTG-C-T-AAC---TGCTTTGCGAT-TATAT-ATCAATAG-C-GGCCGACT---TTATTTGTCTATATAGGAAAAT-TTGCTTGCCTTTAG---AACT--CG-C-----TTGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATT-CT-C---ATA-AT-TTGACTTTCAACCC--ATATTG-------GAG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GA-GACTTTTAAT----TCA--GC-AA-TG-ACCACAAAA---TTAATTTATTG-CAA--TATTG-TTT-CT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAt
gi|5 : atgagcgaTCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA-G---CTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACCTTAAAATGT----------AGCCT---GTGTAT---TACA-ACCTAAAGG----------------AC-ATA-GTGC-AAAAAAAGCAC--C-AAATATTAAAA-CCAGAGGGTT---GCTGATTCAACTTGTCCTAAAGACTTTGACT-GTAT-TTGAA-T-GCAG-ATACGAC-A-G-TT-CA-CCACACATG---AAATTCT----AACGC--AC-C-TT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA---TCTT-ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG--ACACATCAA-TACCAAAA--G-AG-AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAAATTTG-C-T-AAC---TGCTTTGCGAT-TATAT-ATCAATAG-C-GGCCGACT---TTATTTGTCTATATAGGAAAAT-TTGCTTGCCTTTAG---AACT--CG-C-----TTGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATT-CT-C---ATA-AT-TTGACTTTCAACCC--ATATTG-------GAG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GA-GACTTTTAAT----TCA--GC-AA-TG-ACCACAAAA---TTAATTTATTG-CAA--TATTG-TTT-CT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAaagtaa
gi|7 : atgagcgaTCACCA--TATCAATAAA--CAAG-ACTGCA-AACTA---G---TC-------ATACCAG--TT--TTCCAAAAA--TGAGATA-CAT-GCCCTAACTGCCTCTGACCTCACTAGGTGA-CCTTGC-AA-CTCATATGCGTACATATA-ATC--ACAGTTATGTTCTGGATGGAGC-ATG-ATGC--AGAAAGGCAG-GC-AA--ATTACAG-ACAAAGG--T--TGTT-ATTCAACTTGT-CTACA-ACCTTGACT-G----TTGAA-A-GCAG-AT---GTTA-G-TT-CA-CCTCA-ATA---AAA-TCT----AACTCTGAT-C-TT-GA-TATG----ACATT----GTTAACATTG--TTATTGGTTTCAAAGC-ATCAT------A----------TGTGTGCA---------------AACATAC--AGAA---------CTGTA-ACAA--------------------GAAATGT------TGTTGGTA-----GGAGAGCAA-GTGGTTAT-GC--AGGAT---TTTAC--AAA---ATCAGT--ATCTGTC----AGTAAGTTTACGTTTCCCCAT-TTCG-ACACATCA---------------------GT---------GTAGAA----AGAATTATTTTCTATGGAACG-CAAT--------G-AGT--TTCAAA-AAATGTGTT-T-ATT---TGCTCTGTGATGTGCAT-ATCAATAA-C-GGTCTACT---TTA-TTGTTTAT-----AGAATGTTTGTTTCCTTTAA---AAaagtaa
gi|8 : gcatcCCCTA--TACCATTAAAA-CAAG-ACT-CA-AACTTCACG---CTTTTT-AAAC--CA---CA--TTTGTAAAAAATGAGCTA-CAT-A--------G--TATG-CCTTAAC-TGT-C-C-TCAC-AAC-TCAAATG------------------AGTTG-GCTCTGAA-GAGAC-ATGCCTGC---AAAAGGCAGAAC-A---ATTACAATCCAGCGCG-T--TGCTA--TAAACTTGTTCCAAGG--CTCGACTCGTGTATAGAACT-GCG----A-AATCA-GTTT-CAGCCACA-
gi|9 : acaaataatgttcttgctataccccacaatctctatatttctcaagaaagatcttgtaaacttagctcgccctgaggatcaaaaacctacctctaagctgacaaaatatgacatctgacG-GG---T-GA-GACTTT-AAT--TGTCAA-GCAAAATG-ACCACAACACCCCTAAAGTA-CG-CAA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTACC----AC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAAA----TGACA---CACAGGTCACAGGTTAATATTCTTAT-TTACTG-TT-AT-TACG--GTA--------------TTTGGTTTT---T---CGCCACTTTACAGA-TTTTTTTG--TCGGC-CACTT-T--TGAATTTTTTCTT-C-GCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGcaaggagggttaaaaaataccgctgacagctattgagtatagaa
blockSeqs : ACG AA G G . T AG T CAG TGAA AAA T CTAA T C T C AA CCCTCACC C CAAA T ACATATA T TTATGTTCTGGATGGA . CC A AA . ATAT T G GGTT GA C T C C CGTGTA T CT GTAGACC . T T G C . TT . T . . T TA . T . T T GC T AACTAAA GTT T TA CATACAGAACTTACAACAAGAATGCATTGCAATGCAAAGCCAG T TTGGT A TT . ACTCCTTC C GCTGA TA T CAGT TAA T T GAC AATACCAAAAGCAG AC CT T A AT G GATTTGAATG CT G G CCTACACC TA . G . AAT T ATAGGAAAAT CT A . . T . A T . T CACTGC . . GGTCT ATTT AATCA T . CAA C A T A GA T ATGGCAT ATGAATA C TACAGCC A CGA C . A CCTGTGA A A A C C AG T . AT A TCTCC A . GT A TTGCCCTCC CCA G ATTCTT . TT A A . . GAC CAG T GT AACACAGGTTAGGAAAA . G AA T T T . TA AAGAAAGAAAGATTT GG GTCT TAC AT CG G A C . T C G A T CGC ATG T .
blockSeqs : ACG AA G A . T CG T CAG TGAA AAA G ATA T C T C AA GACCTTGC C CATA T ACAG T TTGACTCTGAAGGA . G A A . ATAT . G GGTT GA C T A T GTAT T T ATACGAC . . . . C . TT . T . . T TT . T . T T C T AACTAAA GTT T TT CATACAGAACTTACAACAAGAATGCATTGCAATGCAAAGCCAG T . . T . ATTTTT C GCTGA . . . . T G GG ATACCAAAAGAG . CT T G T . GATTTGAATG CT G T TTTATT TG . . . . T ATAGGAAAAT TT G . . . . A T . T CACTGC . . GGTCT ATTT AATCA . . . . . T C A T . AACGAT C . . CGA . . T TGTCATG A A . C C TT T . T A TCTCC A . GT A CGTACC . . ATCT . AT A A . . GAC AA C GT AAACACGGTGGAAAACT . G AT G . T . . AAGAAAGAAAGATTT GG GTCT TAC AT . G . C . T C G . T CGC ATG T
blockSeqs : CA A . A . T G T TAC GTT AAA G CTA . C T C TA CCTCAC C CAAA T TACA T TTGGCTCTGAAGAG . G . G . AT . G CGTT C C T A T GTAT T T ATACGAC . . . . . . T . T . . . TT . T . T T . T AACTAA . T TT CATACAGAAACTTGTAAAAA T . . T . ATTTT C AA . . . . T T CG ATACCAAAAGAG . T T T C . G . G T TTTATT TG . . . . . ATGCATG TG G . . . . A T . T AGTG . . AGAT TA AACC . . . . . T C A T . ACATA C . . . . . T TGTCAA A . . C C TT . . T A CTTG . . . . CGTACC . . TCTT . TT A C . . AC AA C GC AACACAGGTTAGGAAAA . G AA G . T . . AAAAAAAA . TTTT . T . . . . . T . . . A G ATG T
blockSeqs : T A . A . C G . A CA A G CG . C . A C . C G C TACA . . . G . . . AT . A GTT A T C A C TGT A T TAGAC . . . . . . T . . . . . T . . . G C . A AT . A . CTGTAACAAGAAATGT T . . . . TCTT C A . . . . T G G . . T T T T . T . G T CTAAC G . . . . . AGAATG TG T . . . . . . . . CA . . . A ATT . . . . . T C . . . ACATA . . . . . . T TGTCAA A . . C C AG . . T A TCT . . . . TACC . . TCT . T A A . . AT A T GT AGTTAACAACC . G A G . . . . TA . T . A . . . . . T . . . A T ATG T
blockSeqs : T A . G . . G . C T . G CG . . . . C . . G . . . . . A . . . AT . G T A . . . C G . A ATGTT . . . . . . T . . . . . T . . . . . . . . CATACAGAAACTGG G . . . . TCTT . G . . . . . G G . . T . G . . T . . G CTAAC T . . . . . AGCAT TT . . CA . . . . . . . . . . ACGA . . . . . . . TCA . . . . . T . . T A CCT . . . . CC . . TCT . T . . . . AC A . . TTA . . A G . . . . TA . T . T . . . . . T . . . T T . T
blockSeqs : A . . . . AAATC . . . . . . . . . . . G . . . . . . G . . . . T . . . . . . . . . . TCA . . . . . T . . . . CT . . . . C . . . . A . C . T . . . . . T . . . T G . T
blockSeqs : A . . . . . . . . T . . . . CT . . . . A . . . . A . T . T . . . . . . . . . T G . .
blockSeqs : T . . . . A . . . . . . . . . . . . . T G . .
blockSeqs : . . . G . .
blockSeqCons : G**** TGA**** AAA AA CCTCGC**** CAAA TTGGCTCTGGAGGG** ** AT** GGTT*** GTGT** T** ATAGAC*** *** T* **** TT **** T**** ** AACTAA*********** *************** T* ** ACTCTT** G** ATACCAAAAGAG***** CT TG ATGGAATG*** *** ** ***** T* CATG******* GGT** AT** AATCA A* ACGATA** TGTCGA*** NN CCT** CTACC***** TT********** A****** *** AC*********** GT AACACAGGTTAGGAAAA***** *** AA G* *** T* ** G**
originalCons : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA-G---CTTTTTTAAACANCA---TG--TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACCTTAACATGT-C-CCTCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGAA-GGAAC-ATG-GTGC-AAAAAAGGCAG-AC-AAATATTACAA-CCAGAGGGTT--TGCTGATTCAACTTGTCCTAAAGACCTTGACT-GTGT-TTGAA-T-GCAG-ATA-GACCA-G-TT-CA-CCACA-ATG---AAATTCT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA----------AGTGTGCG------------GTTATCATGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATTTCTTTACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTGG-ACACATCAAATACCAAAA--GCAG-AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TCA-TTGTCTATAT-GGAGAATGTCGCTTNCCTTTAG---AACT--CG-C-----TCGGAAT-GT-ATATTGAAACACTGC-----TTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATCAAGTT-CT-C---AAA-GT-ATGACTTTCATCCC-AATATTG-------GAG-ACGA-TATAATCCCCATA-------AG-GG---T-GA-GACTTTTAAT--TGTCA--GCAAA-TG-ACCACAACACCCTTAA-TTA-CG-CAA-TTATTGATTT-CTCCGTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTAC-TACC----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CAC-GGTTAGG--AA----TGACA---CACAGGTCACAGGTTAATATTTTTAT-NTACTG-TT-AT-TACG--G-A--------------TTT--TTTT---T---CGCCACTT---AGA-TTTTTTTT--TC-GC-CACTT-T--TGAATTTTTT-TT-C-GCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
finalCons : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATAG----CTTTTTTAAACANCATGA----TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACCTTAAAATGTCCTCGC----AACCTCAAATGTGT---TACA-ACCTAAAAGTTGGCTCTGGAGGG--AC-ATG-GTGC--AAAAAGGCAG-AC-AAAT--TACAA-CCAGAGGGTT---GCTGATTCAACTTGTCCTAAAGACCTTGACTGTGT--TTGAAT--GCAGATAGAC---A-G-TT-CA-CCACA-ATG---AAAT-CT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA-----------GTGTGCG---------------ATCATGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAACTCTT--ACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTG--ACACATCAATACCAAAAGAG-----AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TCA-TTGTCTATATGGAATG---TCGCTTNCCTTTAG---AACT--CG-C-----TCGGAAT-GT-ATATTGAAACATG-------TTCA-ACT-ATAGGGT--AGTCTAAATTGGTGTAAT--TTTAATTGACAATCAAGTT-CT-C---AAA-GT-ATGACTTTCATCCCA-ATATTG-------GAGACGATA--TAATCCCCATA-------AG-GG---T-GA-GACTTTTAATTGTCGA---GCAAA-TG-ACCACAACACCCTTAANNTA-CG-CAA-TTATTGATTTCCT--GTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTACTACC-----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGATT----------TAGAAAA------CACC-AGTTT---GCAC-----------G-AAGCGCAGTTAAACAACACAGGTTAGGAAAA-----TGACA---CACAGGTCACAGGTTAATATTTTTATG-TACTG-TT-AT-TACG--G-A--------------TTT--TTTT---T---CGCCACTT---AGAT-TTTTTTT--TC-GC-CACTT-T--TGAATTTTTT-TT-C-GCCATTG--GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAAAAAAATTGTATCCGTTGAAAATTTCGAACTCGGTCGTTTTAAAAAAAAACACAGTTGGAGCATTTTAAAGTCCACAGCCTTATCCAATATTGCCACGCCGCACATTCCAAACACCACAAGGAAAACTTAACGTTGCAGATGAAGTTTGAGCAGGAGAAAGTTAACGAAAATTCGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCGGGATTCCCCTGTATTTTGAGTCTAAAGAAACCACATTTAAATCGCTTCCTGCAATGATTTCAAACTTAATTTATTTTTGACTAATTATTGTCAATACACCACCTTATAGACTTATTTTTCTTATAATTGGATAAAGCGACCAGAAAGTCTCCACGATTTTACTATATCTATGAAATAACTTTATTTACCGACTCTTTCATGCAACACCTTTAGGGAAATCACCATAGATTACATGCAACACCTTCTTTC
Unaligned ( gi|11 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|12 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|21 ): GTTCCCAGCCTGTCCCAAGTTTAATCATTCAAGATTTTTATTAACGCTGTTAACGATGGTTAATAGCAATGGTAAAGGATATATTTC
Unaligned ( gi|22 ): ATTTGAATAAATCATCTTATCATTTTTTTACGCAACACCTTTAAGGAAATTAACATTAGGCGTGCAACATCCTCTTTC
Unaligned ( gi|24 ): GCAACACTTTTAGGGATAATAGCAATAAATTGCAACACCTTCTTTC
Unaligned ( gi|26 ): ACTTGGCCTTATCAATTTCACAGCCTTGAGCAAATTTTTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 1 11111 3333333 1111 2 2222222222222222 1111 222222222222222222222222222222 111 1 11 2222 111111 222222 1 1 1111 1111111 1 11 1111 22222 11 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11111 11 11 33333 1111 111 22222222222222222 22 11 5555555555 11 44444444444 111 1 5555555555555 111 11 22222 2222222222222 3333 3333 11111 111 11 1 2222222 11111111 2222222 111 22222222 1 11 1 11 11 1 11 1 2222222222 111 222222 333333333333 2222222 111 3333333333333 111 2222222 11111111111 1 1 6666666666666666 11 1111111 222 11 111 333 1
lowQualScore : 999 33 0 2 5 1 55555 3 3 1 6666666 77 3 2 2222 0 2 6 6 5555555555555555 6 3333 1 777777777777777777777777777777 1 6 6 77 222 3 9 88 6 6 2 1111 1 9 3 3 333333 7 888 5 55 222222 5 5 1 5 1 4444 6666666 7 6 3 6 77 4444 11111 99 3 1 55 7 88 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 66666 6 44 99 99 6 99 6 11111 77 5 2222 000 8 1 5 0 22222222222222222 3 77 11 1 3 0 22 5 4444444444 55 4 1 66666666666 88 5 5 5 000 1 5555555555555 33 7 111 11 8 00000 3 88 8 1 9999999999999 8 8 4444 3 0 0 8888 33333 6 6 111 6 6 3 2 44 5 1111111 66666666 6 1111111 5 777 5 5 8 55555555 7 7 5 2 4 66 0 5 88 22 2 88 0 5 33 0 9999999999 111 6 777777 6 666666666666 3 4444444 6 111 2222222222222 000 3 88 7777777 44444444444 6 5 0 55 8 3 4 66 8888888888888888 22 8888888 000 00 66 8 4 8 66 4 8 8 4 1 666 000 3 0 0 5
lowQualScore : ... .. . . . . ..... . . . ....... .. . . .... . . . . ................ . .... . .............................. . . . .. ... . . .. . . . .... . . . . ...... . ... . .. ...... . . . . . .... ....... . . . . .. .... ..... .. . . .. . .. ..................................................................................................... . ..... . .. .. .. . .. . ..... .. . .... ... . . . . ................. . .. .. . . . .. . .......... .. . . ........... .. . . . ... . ............. .. . ... .. . ..... . .. . . ............. . . .... . . . .... ..... . . ... . . . . .. . ....... ........ . ....... . ... . . . ........ . . . . . .. . . .. .. . .. . . .. . .......... ... . ...... . ............ . ....... . ... ............. ... . .. ....... ........... . . . .. . . . .. ................ .. ....... ... .. .. . . . .. . . . . . ... ... . . . .
lowQualScore : 888 22 0 3 7 7 00000 2 7 0 7777777 88 2 5 5555 0 5 7 7 7777777777777777 7 2222 7 888888888888888888888888888888 0 7 7 77 333 3 8 33 7 7 5 7777 0 8 2 7 555555 5 777 7 99 111111 7 7 4 7 4 2222 8888888 3 7 3 7 22 2222 55555 22 2 7 88 3 22 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 77777 7 00 22 33 7 22 7 77777 99 7 1111 000 4 0 7 7 33333333333333333 0 99 11 6 0 1 99 7 1111111111 77 3 3 66666666666 33 7 7 7 000 4 3333333333333 22 5 777 00 0 00000 8 88 0 0 2222222222222 0 0 6666 8 8 8 8888 77777 7 7 777 7 7 2 5 00 5 7777777 00000000 7 7777777 0 555 0 0 7 44444444 1 1 7 5 5 66 0 0 22 55 0 88 0 0 88 0 8888888888 777 7 555555 7 000000000000 5 8888888 7 777 8888888888888 000 7 22 2222222 22222222222 7 5 1 66 9 3 4 11 2222222222222222 22 7777777 000 99 11 9 4 9 11 8 9 0 0 1 000 888 2 8 8 5
consensus : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA-G---CTTTTTTAAACANCA---TG--TTTAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACC-TTA--ANGTGTCC-TCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGAAGGGA-C-ATG-GTGC--AAAAAG-GCAGACAAAT--TACAA-CCAGAGGGTTGCTG--ATTCAACTTGTCCTAAAGACCTTGACT-GTGT-TTGAA-T-GC-AG-ATA-G---AC-AG-TT-CA-CCACA-ATG----AAAT-CT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA-----------GTGTGC--------G---A----TCA---TGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAATT-CTT--ACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATTTTG-ACACATCAA-TACCAAAAG-AG----AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TCATT-GTCTATATAG---AA---TGTCGCTTNCCTTTAG---AACT--CG-C-----TCGGAAT-GT-ATATTGAA------ACACTGCTTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATTGACAATCAAGTT-CT-C---AAA-GT-ATGACTTTCATCCC-AATATTG-------GAG-ACGA-TATAATCCCCATA-------AG-GG---T-GA-GACTTTTAAT--TGTCG-AGCAAA-TG-ACCACAACACCCTTAATNTA-CG-CAA-TTATTGATTTTCT--GTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTAC-TACC----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGCGCAGTTAAACAA-CAC-GGTTAGGAAAA--TGACACACAGGTCACAGGTTAATATTTTTATG-TACTG-TT-AT-TACG--G-A--------------TTT--TTTT---T---CGCCACTT---AGA-TTTTTTTT--TC-GC-CACTT-T--TGAATTTTTT-TT-C-GCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
Reference ( family-506 ) : TGTTCTCCN--TATCAGTAAAA-CAAG-ACTACA-AACTATA-G---CTTTTTTAAACANCA---TGA-TTCAAAAAAAATGAGCTA-CAT-GCCCTAACTGCCTCTGACC-TTA--AAATGTCC-TCGC-AACCTCAAATGTGT---TACA-ACCTAAAAGTTG-GCTCTGGAGGGA-C-ATG-GTGC--AAAAAG-GCAGACAAAT--TACAA-CCAGAGGGTTGCTG--ATTCAACTTGTCCTAAAGACCTTGACT-GTGT-TTGAA-T-GC-AG-ATA-G---AC-AG-TT-CA-CCACA-ATG----AAAT-CT----AACGCTGAC-C-TT-GATTATG----ACCTT----GACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAA-----------GTGTGC--------G---A----TCA---TGCTNAGAA---------C-NT--ACAG--------------------AAACCGG------GGCTTGTG-----GGAGAGCAA-GTGATTTT-GC--AGAACT-CTT--ACCAAAG---ATCAGT--ATTTG-C----AG---GTTTACGTTTCCCCATNTTG-ACACATCAA-TACCAAAAG-AG----AATGGTGTA--CATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGT--TTCAAAGAAATTTG-C-T-A-C---TGCTTTGCGATGTGCAT-ATCAATAG-C-GGCCGACT---TCATT-GTCTATATGG---AA---TGTCGCTTNCCTTTAG---AACT--CG-C-----TCGGAAT-GT-ATATTGAA------ACA-TG-TTCA-ACT-ATAGGG--TAGTCTAAATTGGTGTAA--TTTTAATTGACAATCAAGTT-CT-C---AAA-GT-ATGACTTTCATCCC-AATATTG-------GAG-ACGA-TATAATCCCCATA-------AG-GG---T-GA-GACTTTTAAT--TGTCG-AGCAAA-TG-ACCACAACACCCTTAANNTA-CG-CAA-TTATTGATTTCCT--GTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTAC-TACC----AC---TAGTACCAGTTAC-CTGAGATTCTTGTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GC----AC-------G-AAGCGCAGTTAAACAA-CACAGGTTAGGAAAA--TGACACACAGGTCACAGGTTAATATTTTTATG-TACTG-TT-AT-TACG--G-A--------------TTT--TTTT---T---CGCCACTT---AGA-TTTTTTTT--TC-GC-CACTT-T--TGAATTTTTT-TT-C-GCCATT-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGATATAT
gi|1 : TCCCCT--GATCAGTAAAA--AAG-ACTACATAACTATA-GAATCGTTATTAATTATCAGTCTGG-TC----AAAAAT-AG-TA-CAT-GCC-TAACTGCCCCTGACCATTA--CTGTCTCC-TCAC-AAC-TCAA-TGTGT----ACAGACCTAAAAAGTG-GCTCTGAAGA-A-CGATG-CTGCTAAAAAAG-GCAGACCAAA--TACAA-CCC-AGGGTTGGCGCTATTCAACTTGTCT--AAGAC-TTGACT-G-GT-TGGAA-TTGC-AGTATG-GTTCAC--G-TGGCA-CCACA-ATGCATAAAGT-ATGGGAAATGCTGACACATT-GAC-ATGGAAGACCTTCTTCGACAACATTGTTCTATTATGATTCAAG--ATTTCGAGATAACTTGACGAGTGGTGTGCATAACTAAG---AAGTGTCAACTTACTGAAAA---------C-TTCAAAAG--------------------AAAT--G------GACT-GTG-----G-AGAGCAA-GGTATTTT-GTTTAGAATTTCTT--AC--AAG----TCAGT--GTTTG-C----AG---GTT-ACGTTGCCC-ATTTT--ACACATGAAATACCAAAAA-GGCAGGAATAGTGTA--CATTGTAGAATAAAGGAATCATTATTT-TGAAACG-TAAT--------G-AGC--TTCAAAGAAATTTG-CGTAA-C---TGCTTTGCGAAGTGCATGATCAATAG-CAAGCTGACT---TCATT-GTCTATA--G---AAGGTTATCGCTTCCTTTTAGGCAAACTTCTG-CATATATCGAGATGGTGAAATTGAAGACGGCATA-TG-TCCATACTAATACAA--T--TCT-AATTGGT-TA----TTAAATTGAC---CAAGTT-CTCC---AAA-GT-ATGAC--TCATCCC-AATG-TG-------GAG--TGA-T-TAATCTCATTA-------AG-AG---G-GAGGACTTATAG------CG-TGTGAATTG-TTCAT-ACACCCTTTA-ATA-CGCCAA-TGATTG-TTTTCT--AAAAACCCAAA-TGACCTGAGGGA--TA-C-TAATCTA-----C----AC---TAGTACCAGTGAC-CTGAGAT--CTGTGTGCACTGGAAGCGGCAGAGCTTGCGATAGTAATGATGTGCACCAAGTTTCTAGCGTCAACAGATGAGG-GAGAGCA--TAAAC-T-CATTGGT---GACAA----AC-CACA-GTCACAGGTT--TATTTCTATGTTACTGTTT-ATATACG--A-G--------------TTT--TTTT---T---CGCCACTGA--AGA-----TTTT--TC-GC-CACTT-TGATGTAATTTTT-TT-C-GCCATT---GCGCAA---ATGGCGACT-ACAGCTCGAGCCCT
gi|10 : ctcccactgaccaaatttcttttatcggggactactttattcgttggcaagcggcgaaaagacctggcaccgtattttatttcattgtcgtaggataccatggatgaataatgccatatttgtggaaagaaataaagtatttgaaaaagttttataaatgggtacaaaaaatatgttacttctataatttctatatggtctggaagaaagagcgtcttgcacaaaagcctgagatccaaaagacctacttaaaactgacaaaatatgagcatcG-GG---T-GA-GACTTT-AAT--TGTCA-AGCAAAATG-ACCACAACACCCCTAAAGTA-CG-CAA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTACC----AC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAAA--TGACACACAGGTCACAGGTTAATATTCTTATT-TACTG-TT-AT-TACG--GTA--------------TTTGGTTTT---T---CGCCACTTTACAGA-TTTTTTTG--TCGGC-CACTT-T--TGAATTTTTTCTT-C-GCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGagt
gi|13 : CCCTTAAT-TA-CG-CAA-TTATTGATTTTCT--GTAAACCCA--------------------CTTAATCTAC----C----AC---TAGTACCAGTTAC-CTGAGAT--CTGTGTGCACT-GAAGCGA-------T----TAG-AA------ACACC-AAGTT---GC----AC-------G-A---GCA---AAA----------TTA----------ACACACA-GTCACAGGTT-ATATTTCTATG-TACTGTTT-AT-TACG--G-A--------------TTT--TTTT---T---C-CCA------------------------C-CACTT-T--GGAA-TTTTT-TT-C-ACCATT-G-TTGCAA---ATGGCGACTCACAGCTCGAGCCCTGct
gi|14 : cAA---------C-AT--ACAG--------------------AAACTTGTAAAAAGAAATGTGTTGGTGGTGAGCAA-GTGGCTAT-GC--AGGATT-TTT--ACCAAA----ATCAGT--ATCTG-CCAGTAA---GTTTACGATTCCCCATTTTG-ACACAC---------------------AT--------CATTGTAGAAT-----AATTATTTCTA-TGGAACG-CATT--------G-AGT--TTCAAAGAAATGTGTT-T-ATT---TCCTCTGTGATATGCAT-ATCAATAA-C-GGTTTACT---TTATT-GT
gi|15 : TGTTCTCCT--TATCAGT-AAA-CAAG-ATT
gi|16 : cactgttgaaaccaaaaattctttttcgcacacttttcgagcgacgaaaaaccacaaaaccctatttttcagttatatccatgtaatgctatagttgtggaaaagaataaaaagtttcaagtaaatttgaaaagtttaaataaattacaaataaattaATAATTTTATG-TAATG-TTTAT-TACG--G-AAGAAAGAAAGATTTTTT--TTTTGTCT---TGCCACTT---AAAATTTTTTTT--TC-GC-CACTTCT--TGAATTTTTT-TCGT-GCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTG
gi|17 : ttATAATTTTATG-TAATG-TTTAT-TACG--G-AAGAAAGAAAGATTTTTT--TTTTGTCT---TGCCACTT---AAAATTTTTTTT--TC-GC-CACTTCT--TGAATTTTTT-TCGT-GCCAAT-T-GCGCAAATGA--GCG-CTCAC-GCTCGAGCCCTGtt
gi|18 : ttATTTTTATG-TACTA-TTTAT-TACG--A-AAAAAAAA-------TTT--G-----------GCCACTT---TGA-ATTTTTTT--TC-GC-CACTT-T--CAAA-TTTTT-TT-C-GCCATT-G-GCGCAA---ATGGCGACTCACAGCTCGAGCCCtt
gi|19 : gaaaattgaacacaaaaaccTCTCCCA-TATCAATAAAA-CAAG-ACTGCA-AAC
gi|2 : caaggaatattgttaacagacgcctgaggatgaaaaatccattctcatagctgacaaaatatgaaca-AG----AATGGTGTA--CATTGTAGA-CTATAAAAT-ATTATTT-CGAAACGGCAAA--------T-GAT--TTCAAAGAAATTTG-CCT-A-CACCTGCTTTGCGA-GTGCAT-CTCAATAGGC-GGCTGACTAATTCATT-ATTCA-ATGC---A----TGTCTCTTA---TTAT---AAAT--CATC-----TC--AA-----------AA------ACA-T-----------ATAGAGA-TGACCTAAATTTGTGTGT--ATTTAATTGACATT---GTTTCT-CCAAAAACGT-ATGA--TTAATCCCGAATATTAATGGCATGAA-ATGAATACAATCCCCACATACAGCCAG-GC---TCAA-GACCTTAACTCCTGT-G-AGCAAA-TG-ACCACAATGCC-TTAAT-TA-CG-CAAATTATTGATTTCCT--GTAT-TCCAAA-TGACCTGA-GGA--TA-CTAAGTATAT-TGCCCTCCACCCATAGTAACAGTTAC-CTGAG--TCTTGTGT-CACT-GAAGCGA------AT----TAGAAA-------CACC-ATTTT---GT----AT-------G-A-GCGCAGTTAAACAAACAC-GGT--GGAAAACTTGACACACAGTCCACAGGTTACTACTTT--------------AT-TACGTAG-A--------------TTT--TTTT---TTTTCGCCACTG---AGA-TTTTTTTTCGTC-CC-CCCTT-T--GAAATTTCTT-TT-C-GCCATT-G-ACGCAA---ATGGCGACTCACA-CTCGAGCCCTGATATAT
gi|20 : gcC-AG--TA-G---AC-AG-TT-CA-CCACA-ATG----AAAT-AT----AATGCTGAC-CTTT-GA-TAAG----ACCTT----GACAACATTG--CTAATG-TATTCAAGGCATC-TGAACTAA-----------GTGTGT--------G---atttcgcttctcaacatatacccacagtctaaacctttaattttctatttactctgtgctgcgtcgatctactaccaagggagatatttctatcttccttcgacttatagccttgaatgacttgcgcgagctaaaaacatatcacgaagcgacatgagagcaagacccaacggttcttgttccttaggaatatgtaactaataccgcatcaaattgaataaacatttcaaaagactactaagtgtgttgtcgcctaagaagagcaactcgaaactcaaatttaacggaaacaaaattgtatcgtgaaagattcgcactcggtcgttttaaaaataaaacatttggcatttaaaagtccacgccttatccacacggcacgcaacactcttcagaggaggaacccgaggcgcaaacttaacg
gi|23 : TAATTGAC---CAAGTT-CT-C---AAA-GTAATGACTTT-ATCCC-AATA-TG-------GAG-ACG---ATAAT-CCCATA-------TGAGG---T-GA-GACTTg
gi|25 : CAGT--ATTTA-C----AG---ATTTACGTTTCCCCATGTTG-ACACATCAA-
gi|27 : -C-GCCATT-G-GCGCAAATG---GCGACTCACAGCTCGAata
gi|3 : TGTTCTCCT--TATCAGTAAA--CAAG-ATTACA-AACTGTAAG---CCTTTTTAAA--ACA---T---TTCAAAAA---TTAGCTAACAT-GCCCTAAC-GCCT-TCACC-TTA--AC-TGTCCCTCACCAACCTCAAATGTGT----ACAGACCTAAAAGTTG-ACTCTGAAGGAA-C-ATG-GT-------AAG-TCAGACAAAT--TACAA-CTAGGG---TGCTC---TTCAACTTGTCT--AAGCCCTTGACC--TGT-T--GA-T-GC-AA-GTA-G---ACCAG-TTTCA-CCA-A-ATA----AAAT-CT----AACACTGCC-C-TTTGAT-ATG----ACCTT----GACAACACTG--CTAATGTTTT-CAAG--G-CTTG------------------TG-GC--------A---A----TCA----GCTATGAA---------C-AT--ACAG--------------------AAACTGG------GGCTTGTG-----GGAGAGCAAAGTGATTTTTGC--AGAACT-CCTTCACCAAAG----TCAGTTAATTTA-C----AG---GTTTACGTTTCCCCATTTTGGACACATCAAATACCAAAAGCAG----AATGGTGTAACCATTGTAGAACTATAGAATTATTATTT-TGAAACG-CAAT--------T-AGC--TTCAAA--------------------GCTTTGTGATGTGCAT-ATCAATAG-C-G--TGACT---TCATT-GTCTATA--G---CA---T-TTTCTT-CCTTTAA---AAAT--CG-C-----TTGG-AT-GT-ATATTGAA------AAG-TG-TTCA-ACT-ATTG-----AGTCTAAA--GGAGTAA----TTAATTGACAACC---TT-CT-C---AAA-GT-ATGACTTTCATCCC-AATA-TG-------GAGAACGA-T-TAAT--CCATA-------AG-GG---T-GC-GACTTTTCAT--TGTCATGGTAAA-TGAACCACAACACCTT--ACTTA-TG-CAA-TTATTGA--TCTTG-GTAAACCCAAA-TGACCTGA-GGA--TA-CTTAATCTA--TACC----AC---TAGTACC-GTTACGCTGAGATTCTTGTGTGCACT-GAAGCGA-------T----TAGAAA------CAACG-AAGTT---GC----AC-------GCAGGCATGGCCTAACA-------GTTAACAACC--TGACACACAGATCATA--TT-GTACTGGTA---TACTA-GT-AT-T-CA--G-A--------------TTT--TTTT---C---CGCCACTT---AGA-TTTTTTTT--TC-GCACACTT-T--TGAATTTTTT-TT-CAGCCA-T-G-GCGCAAATGATGGCGACTCACAGCTCGAGCCCTGAT-TATa
gi|4 : TCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA-G---CTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACC-TTA--AAATGT--------AGCCT---GTGTAT---TACA-ACCTAAA---------------GGA-C-ATA-GTGC--AAAAAAAGCAC-CAAATATTAAAA-CCAGAGGGTTGCTG--ATTCAACTTGTCCTAAAGACTTTGACT-GTAT-TTGAA-T-GC-AG-ATACG---AC-AG-TT-CA-CCACACATG----AAATTCT----AACGC--AC-C-TT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAAA----------GTGTGC--------GGTTA----TCA---TGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA--T-CTT--ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG-ACACATCAA-TACCAAAAG-AG----AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAAATTTG-C-T-AAC---TGCTTTGCGAT-TATAT-ATCAATAG-C-GGCCGACT---TTATTTGTCTATATAGGAAAA---T-TTGCTTGCCTTTAG---AACT--CG-C-----TTGGAAT-GT-ATATTGAA------ACACTGCTTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATT-CT-C---ATA-AT-TTGACTTTCAACCC--ATATTG-------GAG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GA-GACTTTTAAT----TC--AGC-AA-TG-ACCACAAAA---TTAATTTATTG-CAA--TATTG--TTTCT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAt
gi|5 : atgagcgaTCTCCACGTATCAGTAAAAACAAGGACTACA-AACTATA-G---CTTTTTTAAACAGCA---TGAATTTAAAAAAAATGAGC-G-CATTGCCCTAACTGCCTCTGACC-TTA--AAATGT--------AGCCT---GTGTAT---TACA-ACCTAAA---------------GGA-C-ATA-GTGC--AAAAAAAGCAC-CAAATATTAAAA-CCAGAGGGTTGCTG--ATTCAACTTGTCCTAAAGACTTTGACT-GTAT-TTGAA-T-GC-AG-ATACG---AC-AG-TT-CA-CCACACATG----AAATTCT----AACGC--AC-C-TT-GATTATG----ACCT------ACAACATTG--CTAATGTTTTTCAAG--ATCTTGAACTAAA----------GTGTGC--------GGTTA----TCA---TGTTTAGAACATACAGAAC-TT--ACAACAAGAATGCATTGCAATGCAAAGCCAG------GGCTTGTG-----AGAGAGCAA-GTGATTT--GC--AGA--T-CTT--ACCAAAGCTGATCAGT--ATTTA-C----AG---ATTTAAGTT--CCCATGTTG-ACACATCAA-TACCAAAAG-AG----AATGGTGTA--CATTGTAGAA-TATATAATTATTATTT--GAAACG-CAATGATTTGAATGAGTCTTTCAAAGAAATTTG-C-T-AAC---TGCTTTGCGAT-TATAT-ATCAATAG-C-GGCCGACT---TTATTTGTCTATATAGGAAAA---T-TTGCTTGCCTTTAG---AACT--CG-C-----TTGGAAT-GT-ATATTGAA------ACACTGCTTCA-ACT-ATAGGGTCTAGTCTAAATTGGTGTAATTTTTTAATGAATAATCAAATT-CT-C---ATA-AT-TTGACTTTCAACCC--ATATTG-------GAG-AC-A-TATAATCCCCATA-------AG-GGCGAT-GA-GACTTTTAAT----TC--AGC-AA-TG-ACCACAAAA---TTAATTTATTG-CAA--TATTG--TTTCT--GTAAACCCAAA-TGACCTGA-GGGGTTA-CTTAAaagtaa
gi|7 : atgagcgaTCACCA--TATCAATAAA--CAAG-ACTGCA-AACTA---G---TC-------ATACCA---GTT-TTCCAAAAA--TGAGATA-CAT-GCCCTAACTGCCTCTGACC-TCACTAGGTGACC-TTGC-AA-CTCATATGCGTACATATA-ATC--ACAGTTATGTTCTGGATGGAGC-ATG-ATGC--AGAAAG-GCAGGCAAAT--TACAG-ACA-AAGGTTGTT---ATTCAACTTGT-CTACA-ACCTTGACT-G----TTGAA-A-GC-AG-AT--G---TT-AG-TT-CA-CCTCA-ATA----AAAT-CT----AACTCTGAT-C-TT-GA-TATG----ACATT----GTTAACATTG--TTATTGGTTTCAAAGC-ATC---A--TAT-----------GTGTGC--------A---A----ACA---TAC--AGAA---------CTGTA-ACAA--------------------GAAATGT------TGTTGGTA-----GGAGAGCAA-GTGGTTAT-GC--AGGA-T-TTT--AC--AAA---ATCAGT--ATCTGTC----AGTAAGTTTACGTTTCCCCATTTCG-ACACATCAG-------------------------------TGTAGAA----AGAATTATTTTCTATGGAACG-CAAT--------G-AGT--TTCAAA-AAATGTGTT-T-ATT---TGCTCTGTGATGTGCAT-ATCAATAA-C-GGTCTACT---TTATT-GTTTATA--G---AA---TGTTTGTTTCCTTTAA---AAaagtaa
gi|8 : gcatcCCCTA--TACCATTAAAA-CAAG-ACT-CA-AACTTCACG---CTTTTT-AAACCACA---T----TTGTAAAAAATGAGCTA-CATAG---TA--TGCCT-TAAC----------TGTCC-TCAC-AAC-TCAAATG------------------AGTTG-GCTCTGAAGAGA-C-ATGCCTGC---AAAAG-GCAGAACAAT--TACAATCCAGCGCGTTGCTA----TAAACTTGTTCCAAGG--CTCGACTCGTGTATAGAACT-GCGAA-AT-------C-AGTTT-CAGCCACA-
gi|9 : acaaataatgttcttgctataccccacaatctctatatttctcaagaaagatcttgtaaacttagctcgccctgaggatcaaaaacctacctctaagctgacaaaatatgacatctgacG-GG---T-GA-GACTTT-AAT--TGTCA-AGCAAAATG-ACCACAACACCCCTAAAGTA-CG-CAA-TTATTGATTTTCTCCGTAAACCCAAAATGACCTGA-GGA--TAACTTAATCTACGTACC----AC---TAGTACCAGTTAT-CTGAA--TCT-GTGTGCACT-GAAGCGA------TT----TAGAAA------ACACC-AGTTT---GCG---AC-------G-AAGTGCAGTTAAACAA-CACAGGTTAGGAAAA--TGACACACAGGTCACAGGTTAATATTCTTATT-TACTG-TT-AT-TACG--GTA--------------TTTGGTTTT---T---CGCCACTTTACAGA-TTTTTTTG--TCGGC-CACTT-T--TGAATTTTTTCTT-C-GCCATTCGCGCGCAA---ATGGCGACTCACAGCTCGAGCTCTGcaaggagggttaaaaaataccgctgacagctattgagtatagaa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAAAAAAATTGTATCCGTTGAAAATTTCGAACTCGGTCGTTTTAAAAAAAAACACAGTTGGAGCATTTTAAAGTCCACAGCCTTATCCAATATTGCCACGCCGCACATTCCAAACACCACAAGGAAAACTTAACGTTGCAGATGAAGTTTGAGCAGGAGAAAGTTAACGAAAATTCGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCGGGATTCCCCTGTATTTTGAGTCTAAAGAAACCACATTTAAATCGCTTCCTGCAATGATTTCAAACTTAATTTATTTTTGACTAATTATTGTCAATACACCACCTTATAGACTTATTTTTCTTATAATTGGATAAAGCGACCAGAAAGTCTCCACGATTTTACTATATCTATGAAATAACTTTATTTACCGACTCTTTCATGCAACACCTTTAGGGAAATCACCATAGATTACATGCAACACCTTCTTTC
Unaligned ( gi|11 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|12 ): GCTCCCACGGACCAAAATTTTCTTTTCGGGCTACTTTTCGAGCGACGCGAAAACACACCCTTATTTTTCGTTATACCCATGAAGATGCCTACGTTGTGGAAAAGAAAATTATTTAATAAAGTTTTAATTATAAATACACCAAATATTAAATTAAGACTTTGGCTATAATTCTATTCTTCGGGAAGAAAGAGTCTGATGAGGATAAAAAAAACTCCTACTTATCCGGGGAACAAA
Unaligned ( gi|21 ): GTTCCCAGCCTGTCCCAAGTTTAATCATTCAAGATTTTTATTAACGCTGTTAACGATGGTTAATAGCAATGGTAAAGGATATATTTC
Unaligned ( gi|22 ): ATTTGAATAAATCATCTTATCATTTTTTTACGCAACACCTTTAAGGAAATTAACATTAGGCGTGCAACATCCTCTTTC
Unaligned ( gi|24 ): GCAACACTTTTAGGGATAATAGCAATAAATTGCAACACCTTCTTTC
Unaligned ( gi|26 ): ACTTGGCCTTATCAATTTCACAGCCTTGAGCAAATTTTTA