lowQualScore : 11111111111111111111111
lowQualScore : 11 9999999999999999999999999 2 2 11111111111111111111111 1111 33333333 1 1 1111 1
lowQualScore : 22 6 0000000000000000000000000 6 0 3 6 6 3 11111111111111111111111 55 3 3 44 4 88 3 2222 2 44444444 4 4 55 55 4 4 7 9 6 555 3 1111 666 4 5555 6666 555 555 6 3 5 6 6
lowQualScore : .. . ......................... . . . . . . ....................... .. . . .. . .. . .... . ........ . . .. .. . . . . . ... . .... ... . .... .... ... ... . . . . .
lowQualScore : 00 0 0000000000000000000000000 0 0 7 7 0 2 33333333333333333333333 00 3 3 66 5 66 6 9999 5 22222222 0 0 55 55 0 3 3 6 0 888 6 4444 444 2 2222 5555 444 444 9 1 7 7 0
consensus : NNNNNTGACTCTAATT---TTGAGGCATTTTATACCATATATAACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATAATTTA-TTACAG-ATTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTA-TTTATT-TG-TTGAAATTG------C-AAAA-AGTA-GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGTCCCCCATA---CCAAGCCA-GG----TTATA---CAAAAAT--A-ACT----TGC---ATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAGA
Reference ( gi|1 ) : AGATCTGGTTTTAATCCTATTG-GGCATTTAGAAGTAAAAATGACG-GGTATATACTCGTATAATATGCTCCAAAATTAGAGTCATTCCTTATAATTTAATTACAGAATTAATAAACAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTA-TTTATT-TG-TTGAAATTG------G-AAAA-AGTA-GTTCC--GGCTGC--TAGTT-GTCAAGGGTGTGTGTCCCCCACA---CCAAGCCA-GG----TTATA---CAACAAT--A-ACT----TGC---ATTC---CCAAACTTGAAATTTACC-AATTAGAACTAAGGATACAGTAAGATTG
gi|11 : TGACTCTAATT---TTGAGGCATTTTATACCATATATAACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATGAT----TTACAGTATC---------AATTAAT--AAA-AACT-ACA-AA--TATTTCCCTTGCT
gi|12 : attttaaggaaCA-GGT-TATACTCGTATGATATGTCCCAAAATTAG--TCATTCCTTATAATTTA--TA----ATTA-----CATAATTAAT--AAACAACA-AAA-AA--TATTCCCCCTGCTT--TTA-TTTATT-T
gi|11 : cTATATA-TGGTATAAAATGCCTCAAAATTAGAGTCATTCCTTAAAAT
gi|3 : AAAGTCATTCCTTATAATTTAATTACAG-------------AATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGTTT--TTA-TTTATT-TG-TTGAAATTG------C-AAAA-AGTA-GTTCC--GGCTGC--TAGTT-GTAAAGGGGGTGTGT-CCCTATA---CCAAGCCA-GG----TTATA---CAAAAAT--A-ACT----TGC---ATTC---CCAAACTTGAAATTGACC-AATAAGAGCTAAGGATACAAAAAGAacgaggttatactcgtataatatgccccaaaattagagtcattccttatgatttacagtatcaattaataaaaactacaaatatttcccttgct
gi|5 : TTAATTA-CAGAATTAAT--ACACAAGT--CA-AA--TATTTCAAATGTTT--TTG-C--AT--------AAAT----------------GTA-GTTCT--GGCTGC--TTGTT-GTCAACGGGGTATGTCCCC-ATA---CCAAGCCA-GA----TTATA---CAAAAAT--A-ACT----TGC---ATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAAAatt
gi|4 : atCAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTA-TTTATT-TG-TTGAAATTGCAAAAAGTAAAA-AGTA-GTTGC--GGCTGC--TAGTC-GTCAAGGG-GCATGTCCCC-ATA---CCAAGCCA-GG----TTATA---CAAAAAT--A-ACT----TGC---ATTC---CCAAACTTGAAATTGACC-AATCAGAGCAAAGGATATAATAAGAattaa
gi|10 : TTAATCAAAATAAC--ACACAA--TATT--CCTTGCTA--TTA-TTTGTT-T---T-AAATT----------------------------CTGC--TAGTT-AC--AGAGCGTG-----CCCATATGACCAATCCA-AGATGATTAGA---CAAAAA---G-ACT----CGC---ATTCGCCCCAAACTTGAAA-TTACCAAATCAGAGCTAAGGATattaaataa
gi|9 : taattTAAT--AC-CAACTGACA-A---T-TTTTTCTTGTTTG-TTG-CTTGTT-T--TTCAAATTG------C-AAAA-AGTAAGTTCC--GACTAT--TAGTT-GTCAGGGTTGTGT---CCCCGTA---CCAAGCGAGGG----TTATA---CAAAAAT--AGACT----TGC---ATTC---CC-AACTTGAAATTGA-C-AA-TAGAGCTAAGcaaata
gi|13 : gaTAAT--AAAC---T-GCA-A---TATT-CCCTTGCTT--GTATTTTATTGTT-TTGAAATTGC-----A-AAAA-AATA-GTTCCCGGACTGC--TAGTTCGTCAAAGGGGTGTGT-CCCCATA---CCAAGta
gi|7 : AAT--AAACA-CT-GCA-AA--TATTTCCCTTGCTT--TGA-TTTATT-TG-TTGAAATTG------C-AAAA-AGTA-GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGT-TGCCATA---CCAAGTCT-GG----TTATG---CAAAAAT--A-ACT----TGC---ATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATA
gi|8 : AAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--T-----------------AATTGC-----A-AAAA-AGTA-GTTCC--GGCTGCTGTAGTT-GTCAAGGG-GTGTGT-CCCCATA---CCAAGCCA-GG----TTATA---CAAAAAT--A-ACT----TGC---ATTT---CCAAACTTAAAATTTACC-AATCAGAGCTAAGGACACAATAAGA
gi|6 : aa--AAACAACT-ACG-AA--TATTTCCCCTGCTT--TTA-TTTATT-TGTTTGAAATTG------C-AAAA-AGTA-GTT-C--GGCTGC--TAGTA-TTCAAGGGGGTGTGT--CCCATA---CCGATCCA-GG----TTATA---CAAAAAT----ACT----TGC---ATTC---CCAAATTTGAAATTTACC-AATCAGAGCTTAAGGTACAATAAGAa
gi|2 : AAGT-ACG-AAAGTATT-CCCTTCCTTAGTTA-TTTATT-AG-TTGAA-TTG------C-AAAATGGTA-GTTCC--GGCTGC--TAGTT-GTCAGGGGTGattaaa
gi|2 : tttTGTCTCC-ATA---CCA-GCCA-AGA---TTATA---CAGTAATTTA-GCTGCATTACCCCATTC---CCAAACTTTAAATTGACA-AATCAGAGTTAAAGATGCAATAAAAaggggggggggggggggggggggggggggggaggaggggctgtctccataccagccaagattatacagtaatttagctgcattaccccattcccaaactttaaattgacaaatcagagttaaagatgcaataaaaattaa
gi|14 : tttaagtacgaaagtattcccttccttagttatttattagttgaattgcaaaatggtagttccggctgctagttgtcaggggtgaggggggggggggggggggggggggggggggaggaggggcTGTCCCC-ATA---CCGAGCCA-GG----TTATAATACACAAAT--A-ACT----TGC---ATTC---CCAAACTTG----CTACT-AATCAGAGCTattaa
gi|15 : A---CCAAGCCA-GA----TTATA---CAAAAAT--A-ACT----TGC---ATTC---CCAAACTTCAAATTGACC-AATC----CTAAGGATACAATAAGAttcaattattgcaatataaat
gi|16 : t-ACT----T-C---ATT-------AATTTGAAATTCACC-AATCAAAGACAAGACTACAATAGGAat
gi|17 : ttttatcaagatccCT----T-C---GTTC---CCTAATTTGAAATTGACC-AATCAAAGCCAAGAATACAATAAGAattaaattatt
Alignments
lowQualScore : 333 1 1 444444444444444444 11 1111111 1
lowQualScore : 555 5 666 2 4 4 7 3 3 3 000000000000000000 44 3 3 44 3 77 3 3 11 1 7 3 3 5555555 55 55 3 77 5 8 555 3 9999 555 44 3 6666 555 555 4 2
lowQualScore : ... . ... . . . . . . . .................. .. . . .. . .. . . .. . . . . ....... .. .. . .. . . ... . .... ... .. . .... ... ... . .
lowQualScore : 000 5 555 5 0 0 3 3 2 2 777777777777777777 66 1 1 22 5 99 3 3 88 4 3 6 6 5555555 00 00 6 11 0 0 444 3 6666 444 22 1 1111 000 000 3 9
consensus : NNNNNTGGCTCTAATCCTATTGAGGCATTTNGNANCANANATGACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATAATTTA-TTACAG-A-TTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGTCCCCCATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAGA
Reference ( family-502 ) : NNNNNTGACTCTAATT---TTGAGGCATTTTATACCATATATAACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATAATTTA-TTACAG-A-TTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGTCCCCCATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAGA
gi|1 : TGGTTTTAATCCTATTG-GGCATTTAGAAGTAAAAATGACG-GGTATATACTCGTATAATATGCTCCAAAATTAGAGTCATTCCTTATAATTTAATTACAG-AATTAATAAACAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGGAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGTGTGTGTCCCCCACA---CCAAGCC-AGG----TTATA---CAACAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTTACC-AATTAGAACTAAGGATACAGTAAGA
gi|10 : agatcTTAATCAAAATAAC--ACACAA--TATT--CCTTGCTA--TTATTT-GTT-T---T-AAATT-----------------------------CTGC--TAGTT-A-CA---GAGCGTG---CCCATATGACCAATCC-AAGATGATTAGA---CAAAAA---G-AC----TCG---CATTCGCCCCAAACTTGAAATT-ACCAAATCAGAGCTAAGGATCAAATAttg
gi|11 : taattTGACTCTAATT---TTGAGGCATTTTATACCATATATAACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATGAT----TTACAGTA-TC---------AATTAAT--AAA-AACT-ACA-AA--TATTTCCCTTGCT
gi|12 : attttaaggaaAGGT-TATACTCGTATGATATGTCCCAAAATTAG--TCATTCCTTATAATTTA-T----A-A-TTA-----CATAATTAAT--AAACAACA-AAA-AA--TATTCCCCCTGCTT--TTATTT-ATT-T
gi|13 : ccTAAT--AAAC---T-GCA-A---TATT-CCCTTGCTT--GTATTTTATTGTT-TTGAAATTGCAAAA-A-AATA-------GTTCCCGGACTGC--TAGTTCGTCAAAGGGGTGTGT-CCCCATA---CCAAG
gi|14 : TGTCCCC-ATA---CCGAGCC-AGG----TTATAATACACAAA--TA-AC----TTG---CATTC---CCAAACTTG---CT-ACT-AATCAGAGCT
gi|15 : TA---CCAAGCC-AGA----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTCAAATTGACC-AATC----CTAAGGATACAATAAGAttcaattattgcaatataaat
gi|16 : ----TTAT----CAAGAT--CC-AC----TT----CATT-------AATTTGAAATTCACC-AATCAAAGACAAGACTACAATAGGAat
gi|17 : ttC----TT----CGTTC---CCTAATTTGAAATTGACC-AATCAAAGCCAAGAATACAATAAGAattaaattatt
gi|2 : cAAGT-ACG-AAAGTATT-CCCTTCCTTAGTTATTT-ATT-AG-TTGAA-TTGCAAAATG-G-TA-------GTTCC--GGCTGC--TAGTT-GTCA--GGGGTGagtaaat
gi|2 : tttAGGGGCTGT---CTCCATA---CC-AGCCAAGA----TTATA---CAGTAATTTA-GCTGCATTACCCCATTC---CCAAACTTTAAATTGACA-AATCAGAGTTAAAGATGCAATAAAAaggggggggggggggggggggggggggggggaggaggggctgtctccataccagccaagattatacagtaatttagctgcattaccccattcccaaactttaaattgacaaatcagagttaaagatgcaataaaaattaa
gi|3 : tttaagtacgaaagtattcccttccttagttatttattagttgaattgcaaaatggtagttccggctgctagttgtcaggggtgaggggggggggggggggggggggggggggggaggAAAGTCATTCCTTATAATTTA--------A-TTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGTTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTAAAGGGGGTGTGT-CCCTATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATAAGAGCTAAGGATACAAAAAGAattaa
gi|4 : -----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TAAAAAGTAGTTGC--GGCTGC--TAGTC-GTCAAGGGG-CATGTCCCC-ATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCAAAGGATATAATAAGAatt
gi|5 : -A-TTA-----CAGAATTAAT--ACACAAGT--CA-AA--TATTTC------------AAAT-GTT-T--------TTGCATAA-ATG-TA-------GTTCT--GGCTGC--TTGTT-GTCAACGGGGTATGTCCCC-ATA---CCAAGCC-AGA----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAAAattaaataa
gi|6 : attta--AAACAACT-ACG-AA--TATTTCCCCTGCTT--TTATTT-ATT-TGTTTGAAATTGCAAAA-A-G-TA-------GTT-C--GGCTGC--TAGTA-TTCAAGGGGGTGTGT--CCCATA---CCGATCC-AGG----TTATA---CAAAAA--T--AC----TTG---CATTC---CCAAATTTGAAATTTACC-AATCAGAGCTTAAGGTACAATAAGAattaa
gi|7 : AAT--AAACA-CT-GCA-AA--TATTTCCCTTGCTT--TGATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGT-TGCCATA---CCAAGTC-TGG----TTATG---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAattaaa
gi|8 : AAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--T-----------------AATTGCAAAAAA-G-TA-------GTTCC--GGCTGCTGTAGTT-GTCAA-GGGGTGTGT-CCCCATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTT---CCAAACTTAAAATTTACC-AATCAGAGCTAAGGACACAATAAGA
gi|9 : aaTAAT--AC-CAACTGACA-A---T-TTTTTCTTGTTTG-TTGCTT-GTT-T--TTCAAATTGCAAAA-A-G-TAA------GTTCC--GACTAT--TAGTT-GTCA--GGGTTGTGTCCCC-GTA---CCAAGCG-AGGG---TTATA---CAAAAA--TAGAC----TTG---CATTC---CC-AACTTGAAATTGA-C-AAT-AGAGCTAAGa
Alignments
lowQualScore : 222 1 1 444444444444444444 11 1111111 1
lowQualScore : 111 5 1 1 1 1 1 7 3 3 3 000000000000000000 44 3 3 44 3 77 3 3 11 1 7 3 3 5555555 55 55 3 77 5 8 555 3 9999 555 44 3 6666 555 555 4 2
lowQualScore : ... . . . . . . . . . . .................. .. . . .. . .. . . .. . . . . ....... .. .. . .. . . ... . .... ... .. . .... ... ... . .
lowQualScore : 000 5 0 0 0 0 0 3 3 2 2 777777777777777777 66 1 1 22 5 99 3 3 88 4 3 6 6 5555555 00 00 6 11 0 0 444 3 6666 444 22 1 1111 000 000 3 9
consensus : NNNNNTGGCTCTAATCCTATTGAGGCATTTNGNANCANANATGACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATAATTTA-TTACAG-A-TTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGTCCCCCATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAGA
Reference ( family-502 ) : NNNNNTGGCTCTAATCCTATTGAGGCATTTNGNANCANANATGACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATAATTTA-TTACAG-A-TTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGTCCCCCATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAGA
gi|1 : TGGTTTTAATCCTATTG-GGCATTTAGAAGTAAAAATGACG-GGTATATACTCGTATAATATGCTCCAAAATTAGAGTCATTCCTTATAATTTAATTACAG-AATTAATAAACAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGGAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGTGTGTGTCCCCCACA---CCAAGCC-AGG----TTATA---CAACAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTTACC-AATTAGAACTAAGGATACAGTAAGA
gi|10 : agatcTTAATCAAAATAAC--ACACAA--TATT--CCTTGCTA--TTATTT-GTT-T---T-AAATT-----------------------------CTGC--TAGTT-A-CA---GAGCGTG---CCCATATGACCAATCC-AAGATGATTAGA---CAAAAA---G-AC----TCG---CATTCGCCCCAAACTTGAAATT-ACCAAATCAGAGCTAAGGATCAAATAttg
gi|11 : taattTGACTCTAATT---TTGAGGCATTTTATACCATATATAACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATGAT----TTACAGTA-TC---------AATTAAT--AAA-AACT-ACA-AA--TATTTCCCTTGCT
gi|12 : attttaaggaaAGGT-TATACTCGTATGATATGTCCCAAAATTAG--TCATTCCTTATAATTTA-T----A-A-TTA-----CATAATTAAT--AAACAACA-AAA-AA--TATTCCCCCTGCTT--TTATTT-ATT-T
gi|13 : ccTAAT--AAAC---T-GCA-A---TATT-CCCTTGCTT--GTATTTTATTGTT-TTGAAATTGCAAAA-A-AATA-------GTTCCCGGACTGC--TAGTTCGTCAAAGGGGTGTGT-CCCCATA---CCAAG
gi|14 : TGTCCCC-ATA---CCGAGCC-AGG----TTATAATACACAAA--TA-AC----TTG---CATTC---CCAAACTTG---CT-ACT-AATCAGAGCT
gi|15 : TA---CCAAGCC-AGA----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTCAAATTGACC-AATC----CTAAGGATACAATAAGAttcaattattgcaatataaat
gi|16 : ----TTAT----CAAGAT--CC-AC----TT----CATT-------AATTTGAAATTCACC-AATCAAAGACAAGACTACAATAGGAat
gi|17 : ttC----TT----CGTTC---CCTAATTTGAAATTGACC-AATCAAAGCCAAGAATACAATAAGAattaaattatt
gi|2 : cAAGT-ACG-AAAGTATT-CCCTTCCTTAGTTATTT-ATT-AG-TTGAA-TTGCAAAATG-G-TA-------GTTCC--GGCTGC--TAGTT-GTCA--GGGGTGagtaaat
gi|2 : tttAGGGGCTGT---CTCCATA---CC-AGCCAAGA----TTATA---CAGTAATTTA-GCTGCATTACCCCATTC---CCAAACTTTAAATTGACA-AATCAGAGTTAAAGATGCAATAAAAaggggggggggggggggggggggggggggggaggaggggctgtctccataccagccaagattatacagtaatttagctgcattaccccattcccaaactttaaattgacaaatcagagttaaagatgcaataaaaattaa
gi|3 : tttaagtacgaaagtattcccttccttagttatttattagttgaattgcaaaatggtagttccggctgctagttgtcaggggtgaggggggggggggggggggggggggggggggaggAAAGTCATTCCTTATAATTTA--------A-TTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGTTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTAAAGGGGGTGTGT-CCCTATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATAAGAGCTAAGGATACAAAAAGAattaa
gi|4 : -----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TAAAAAGTAGTTGC--GGCTGC--TAGTC-GTCAAGGGG-CATGTCCCC-ATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCAAAGGATATAATAAGAatt
gi|5 : -A-TTA-----CAGAATTAAT--ACACAAGT--CA-AA--TATTTC------------AAAT-GTT-T--------TTGCATAA-ATG-TA-------GTTCT--GGCTGC--TTGTT-GTCAACGGGGTATGTCCCC-ATA---CCAAGCC-AGA----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAAAattaaataa
gi|6 : attta--AAACAACT-ACG-AA--TATTTCCCCTGCTT--TTATTT-ATT-TGTTTGAAATTGCAAAA-A-G-TA-------GTT-C--GGCTGC--TAGTA-TTCAAGGGGGTGTGT--CCCATA---CCGATCC-AGG----TTATA---CAAAAA--T--AC----TTG---CATTC---CCAAATTTGAAATTTACC-AATCAGAGCTTAAGGTACAATAAGAattaa
gi|7 : AAT--AAACA-CT-GCA-AA--TATTTCCCTTGCTT--TGATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGT-TGCCATA---CCAAGTC-TGG----TTATG---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAattaaa
gi|8 : AAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--T-----------------AATTGCAAAAAA-G-TA-------GTTCC--GGCTGCTGTAGTT-GTCAA-GGGGTGTGT-CCCCATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTT---CCAAACTTAAAATTTACC-AATCAGAGCTAAGGACACAATAAGA
gi|9 : aaTAAT--AC-CAACTGACA-A---T-TTTTTCTTGTTTG-TTGCTT-GTT-T--TTCAAATTGCAAAA-A-G-TAA------GTTCC--GACTAT--TAGTT-GTCA--GGGTTGTGTCCCC-GTA---CCAAGCG-AGGG---TTATA---CAAAAA--TAGAC----TTG---CATTC---CC-AACTTGAAATTGA-C-AAT-AGAGCTAAGa
blockSeqs : . A T T C T T A . A T TTACAGTATC CA G C AG T AG T G GT G T T A AAAAGTA CG TG C AA C C TGA A ATGA ATA TT G TGCA CCC GCC G A
blockSeqs : A . A T TAATTA . . . . C G . . T G A . . A . . . AG C C . . G . . . . . . C .
blockSeqs : . . ATTA . . . . T . . . G G . . . . . . . AG C C . . . . . . . . . G .
blockSeqs : . . . . T . . . G G . . . . . . . AG C T . . . . . . . . . G .
blockSeqs : . . . . T . . . G G . . . . . . . AC . C . . . . . . . . . G .
blockSeqs : . . . . T . . . G G . . . . . . . AG . C . . . . . . . . . G .
blockSeqs : . . . . T . . . . C . . . . . . . AG . C . . . . . . . . . G .
blockSeqs : . . . . T . . . . . . . . . . . . A . . . . . . . . . . . T .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : NNNNNTGGCTCTAATCCTATTGAGGCATTTNGNANCANANATGACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATAATTTA-TTACAG-A-TTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGTCCCCCATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAGA
finalCons : NNNNNTGGCTCTAATCCTATTGAGGCATTTNGNANCANANATGACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATAATTTA-TTACAG-A-TTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGTCCCCCATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAGA
Alignments
lowQualScore : 222 1 1 444444444444444444 11 1111111 1
lowQualScore : 111 5 1 1 1 1 1 7 3 3 3 000000000000000000 44 3 3 44 3 77 3 3 11 1 7 3 3 5555555 55 55 3 77 5 8 555 3 9999 555 44 3 6666 555 555 4 2
lowQualScore : ... . . . . . . . . . . .................. .. . . .. . .. . . .. . . . . ....... .. .. . .. . . ... . .... ... .. . .... ... ... . .
lowQualScore : 000 5 0 0 0 0 0 3 3 2 2 777777777777777777 66 1 1 22 5 99 3 3 88 4 3 6 6 5555555 00 00 6 11 0 0 444 3 6666 444 22 1 1111 000 000 3 9
consensus : NNNNNTGGCTCTAATCCTATTGAGGCATTTNGNANCANANATGACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATAATTTA-TTACAG-A-TTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGTCCCCCATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAGA
Reference ( family-502 ) : NNNNNTGGCTCTAATCCTATTGAGGCATTTNGNANCANANATGACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATAATTTA-TTACAG-A-TTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGTCCCCCATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAGA
gi|1 : TGGTTTTAATCCTATTG-GGCATTTAGAAGTAAAAATGACG-GGTATATACTCGTATAATATGCTCCAAAATTAGAGTCATTCCTTATAATTTAATTACAG-AATTAATAAACAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGGAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGTGTGTGTCCCCCACA---CCAAGCC-AGG----TTATA---CAACAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTTACC-AATTAGAACTAAGGATACAGTAAGA
gi|10 : agatcTTAATCAAAATAAC--ACACAA--TATT--CCTTGCTA--TTATTT-GTT-T---T-AAATT-----------------------------CTGC--TAGTT-A-CA---GAGCGTG---CCCATATGACCAATCC-AAGATGATTAGA---CAAAAA---G-AC----TCG---CATTCGCCCCAAACTTGAAATT-ACCAAATCAGAGCTAAGGATCAAATAttg
gi|11 : taattTGACTCTAATT---TTGAGGCATTTTATACCATATATAACGAGGT-TATACTCGTATAATATGCCCCAAAATTAGAGTCATTCCTTATGAT----TTACAGTA-TC---------AATTAAT--AAA-AACT-ACA-AA--TATTTCCCTTGCT
gi|12 : attttaaggaaAGGT-TATACTCGTATGATATGTCCCAAAATTAG--TCATTCCTTATAATTTA-T----A-A-TTA-----CATAATTAAT--AAACAACA-AAA-AA--TATTCCCCCTGCTT--TTATTT-ATT-T
gi|13 : ccTAAT--AAAC---T-GCA-A---TATT-CCCTTGCTT--GTATTTTATTGTT-TTGAAATTGCAAAA-A-AATA-------GTTCCCGGACTGC--TAGTTCGTCAAAGGGGTGTGT-CCCCATA---CCAAG
gi|14 : TGTCCCC-ATA---CCGAGCC-AGG----TTATAATACACAAA--TA-AC----TTG---CATTC---CCAAACTTG---CT-ACT-AATCAGAGCT
gi|15 : TA---CCAAGCC-AGA----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTCAAATTGACC-AATC----CTAAGGATACAATAAGAttcaattattgcaatataaat
gi|16 : ----TTAT----CAAGAT--CC-AC----TT----CATT-------AATTTGAAATTCACC-AATCAAAGACAAGACTACAATAGGAat
gi|17 : ttC----TT----CGTTC---CCTAATTTGAAATTGACC-AATCAAAGCCAAGAATACAATAAGAattaaattatt
gi|2 : cAAGT-ACG-AAAGTATT-CCCTTCCTTAGTTATTT-ATT-AG-TTGAA-TTGCAAAATG-G-TA-------GTTCC--GGCTGC--TAGTT-GTCA--GGGGTGagtaaat
gi|2 : tttAGGGGCTGT---CTCCATA---CC-AGCCAAGA----TTATA---CAGTAATTTA-GCTGCATTACCCCATTC---CCAAACTTTAAATTGACA-AATCAGAGTTAAAGATGCAATAAAAaggggggggggggggggggggggggggggggaggaggggctgtctccataccagccaagattatacagtaatttagctgcattaccccattcccaaactttaaattgacaaatcagagttaaagatgcaataaaaattaa
gi|3 : tttaagtacgaaagtattcccttccttagttatttattagttgaattgcaaaatggtagttccggctgctagttgtcaggggtgaggggggggggggggggggggggggggggggaggAAAGTCATTCCTTATAATTTA--------A-TTA-----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGTTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTAAAGGGGGTGTGT-CCCTATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATAAGAGCTAAGGATACAAAAAGAattaa
gi|4 : -----CAGAATTAAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--TTATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TAAAAAGTAGTTGC--GGCTGC--TAGTC-GTCAAGGGG-CATGTCCCC-ATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCAAAGGATATAATAAGAatt
gi|5 : -A-TTA-----CAGAATTAAT--ACACAAGT--CA-AA--TATTTC------------AAAT-GTT-T--------TTGCATAA-ATG-TA-------GTTCT--GGCTGC--TTGTT-GTCAACGGGGTATGTCCCC-ATA---CCAAGCC-AGA----TTATA---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAAAAattaaataa
gi|6 : attta--AAACAACT-ACG-AA--TATTTCCCCTGCTT--TTATTT-ATT-TGTTTGAAATTGCAAAA-A-G-TA-------GTT-C--GGCTGC--TAGTA-TTCAAGGGGGTGTGT--CCCATA---CCGATCC-AGG----TTATA---CAAAAA--T--AC----TTG---CATTC---CCAAATTTGAAATTTACC-AATCAGAGCTTAAGGTACAATAAGAattaa
gi|7 : AAT--AAACA-CT-GCA-AA--TATTTCCCTTGCTT--TGATTT-ATT-TG-TTGAAATTGCAAAA-A-G-TA-------GTTCC--GGCTGC--TAGTT-GTCAAGGGGGTGTGT-TGCCATA---CCAAGTC-TGG----TTATG---CAAAAA--TA-AC----TTG---CATTC---CCAAACTTGAAATTGACC-AATCAGAGCTAAGGATACAATAattaaa
gi|8 : AAT--AAACAACT-ACA-AA--TATTTCCCTTGCTT--T-----------------AATTGCAAAAAA-G-TA-------GTTCC--GGCTGCTGTAGTT-GTCAA-GGGGTGTGT-CCCCATA---CCAAGCC-AGG----TTATA---CAAAAA--TA-AC----TTG---CATTT---CCAAACTTAAAATTTACC-AATCAGAGCTAAGGACACAATAAGA
gi|9 : aaTAAT--AC-CAACTGACA-A---T-TTTTTCTTGTTTG-TTGCTT-GTT-T--TTCAAATTGCAAAA-A-G-TAA------GTTCC--GACTAT--TAGTT-GTCA--GGGTTGTGTCCCC-GTA---CCAAGCG-AGGG---TTATA---CAAAAA--TAGAC----TTG---CATTC---CC-AACTTGAAATTGA-C-AAT-AGAGCTAAGa