lowQualScore : 2222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 4 1 1 1 7777777777777777777777777777777777777777777777777 1 22222222 222222222222 22222 11111 1 5555555555555555 1 22222 22222 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 3333333 22
lowQualScore : 5 5 0 6 5 7 5 0000000000000000000000000000000000000000000000000 5 3 00000000 6 33 1 2 555555555555 22222 3 6 66666 3 1 4444444444444444 22 0 5 11111 1 0 99 0 9 1 99999 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 66 99 2 8888888 0 22
lowQualScore : . . . . . . . ................................................. . . ........ . .. . . ............ ..... . . ..... . . ................ .. . . ..... . . .. . . . ..... .................................................................................................................................... . .. .. . ....... . ..
lowQualScore : 0 0 0 0 0 0 0 9999999999999999999999999999999999999999999999999 7 0 77777777 0 55 1 8 000000000000 33333 0 0 00000 5 7 4444444444444444 00 8 0 88888 8 8 00 8 6 0 00000 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 88 22 0 8888888 7 33
consensus : NNNTTTATATACTAAAAAAAAGAAATAAAAATCTTTTACTTGAAAAATGGAGGAAGCTACTTCCATATTCGC------CATGCTAT-ATTTAACAT-CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCCACATTCCTAC---------T-GATACCATACCGCTANTGTA---TAAGGCAGAAGTTGCTCCCAGCACTTTTC----ANGTGAAGAAA-TACATCTAGAATATG--TGTCTT-TAAAAATTGTATTGCTGAC-N---ATAGCAGATG------CAC--------TCGAACTTTCGCATTGTNTATGTCCAACGA---G---AA--T-ANT---------TATG-CA------------AA-------AGCGC--A---TCGNACACTCGGA-------TTA-GGGGTGATTTCAAAGTCACGATAT------AATATGAATATAAACTTGG
Reference ( gi|3 ) : TTTTTGATATACTCAAAAAA-GAGATAAACATCATTGAC------------GGGAAC-ATTTCCATA---GT------CATACT----TTTAATAT-CATATAGACA--------GTCACCAGTAAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATATCATAAATGCA---TCAGGCAGAAGTCGCTCCCAGCACTTTTC----ATGTGAGGAAT-TACATCTACAATATG--TATCTT-TAAAAATTGAATTGCTGAC-A---ATAGCAGATG------CAC--------TCAAACTATTGCATTGTATATGTTCAAGGA---G---AA--T-ATT---------TATG-GA------------AA-------AACGT--A---TGAAACACTCAGA-------ATA-GGGGTGATTTCAAAGCCATAACAT------TATGTGAAGATAAACTTAGGACG
gi|9 : TTTATATACTAAAAAAAAGAAATAAAAATCTTTTACTTGAAAAATGGAGGAAGCTACTTC-ATATTCGTATAAAACATGCTATGATTAAATAA-CATATTGACA--------GTTATCAGCAACCTACCGGGTTTGTCTACATTCCTAC---------T-CATATCATACC
gi|1 : ataCAT----GC------TATAAT----TTTAACAT-AATATTGACA--------GCCATCATCGAATTACAGGGTTTGCCCACGGTCCTTT---------A-AATACCATACTTTGAATATA---TAAGTAAGAAGTTGCTTCCAACACTTTTC----A-------AACGTATAT-TAGAAT-------TC-A-GAAAAATTGTATTACT-AT-AGCTATAGTAGATGTTGTTACAT--------GTAAACTTTCGCACTGT---TTTCCTACGA---T---AACCC-AAT---------TATG-CA------------AACGAGTCCATTGT--AAGCTAGTACAC-CACATGTGTAGATAGGGGGTGATTTCAAGGTCACGATAT------AAT
gi|7 : atatcaataagctcaaaaagatagataaattctaaacatgaaaagtattggagcaagtgcaaactcaatttgaa------CATGCTATAATTTAACAT-TATATTGACA--------TCCATCGGCAAATTACTGGGGTTGTC----TTCC-A------------GACACCATATCACTAATGTA---TATGACTGATGTTGCTCTCAATACTTTTT----Aacatattcattacctttgtgtatatgttaaatgtcaaaaatttgagagcgatgaaatactaaagaaaaatgatatatattatcatatataacaagtacgttttatctcttgttag
gi|15 : atttatcgatatggtcaaaagatacaagaaaaggtcttcaaatgaaaagtatgaggaggatgcgtatactccagctgtaATA-T----TTTGATATACATATTGACA--------GTCATCAGCTAATTACTGGGTTTGTTTTCATTCCCCT---------T-GATACCACACCGGTACTGTA---TAAAGCAGAAGTTGCaatataagaatatat
gi|12 : ----TTTAACAA-C-TGTAGACA--------ATCATCAGTGATTTATTGGGGTTGTCCACTTTCTTAT---------T-GATACCATACCATTACTTTG---TAAGGCAGAAGTTGTTCTTGGCACTTTT
gi|10 : ATAT-CATATCAACATATCTCGAGTCATAAGTTAATTAATGGGGTTGTCTACATTTCTAC---------T-GACAC---------AATGTA---CCATGC--TAGT------CAGCG----GC----AT------AAA-TATCTCTAGAATGC---TGACTT-TAAAAGTTGGATTGCTGGC-A---CTCGCATATG------GAC--------tcaggggcataaatatatatata
gi|2 : AT-GATATTGACA--------GTCATCAATGGATTATCGGATTTTTCCACATTCCTATAGATAGTATTAGATACTATATAACTACTGTACTATAAAGTAGAAGTTGTTCCCAGCACTTTTC----AGGTGAAGAAA-TTCATCTAGAATATG--TATTTT-AGAAAATTGTATTGCTGAA-T---ATTTCAGATG------CAC--------CAGAACTTTCGCATTGTTTATGTCCAATGA---GAATAA--T-ATTATTCAATTATATGAGAATATTCAATTATAA-------AACGC--A---CCAAAGACTTGGA-------TAA-GGGATGATTTCAAAGTTACAATAT------AATGTAAATATCAACTTAGac
gi|16 : aacatgctataggtcaGCAAACTACCGGGTTTGTCTACATTCCTAC---------T-GATATCGTACCcgcatactatataaaaagaaattggaaagtgattaaatattttaaaaaaaaataacacgattat
gi|5 : CTCCCTGCACTTTTCTTACATATAA--AAA-TAGCTC-AGAATATACATATATTCTAAAAATTTA-TTAATGGC-T---ATAGCAGGTA------TACTTGAACTTTCAAACTAT----TTGCATATGc
gi|4 : ACTTTTC----AGGTGAAGAAA-TACATCTTGAATATG--TGTCTT-TAAAAA-TGTATTGCCGAT-T---ATAGCACCTG------------------------ATTATAT--CACCTG---AAGCAAACG---AA--TCAAT---------TAT----------------AT-------AGCAC--A---TCAAATACTCAGA-------TTA-GGGATGGTTTCAAA--TAT-ACGG------GATATGAAT-TAAACTTGGatgctatcatttttgcaaaagggtccattttaaaacatacggcaccatatttgcagatttggagttgatttctagattacaattgcatatattgtatatgaacatcaagaatgtt
gi|8 : ATTTCTAACTAT--ATAGCAGATG------TAC--------TTGAACTTCTGCTCTGTTTATGTTCAATGA---G---AG--T-ATC---------CATG-CA------------AA-------AGAGTCAA---T--CACACTTGGA-------TTA-GGAGTGATGTCAAAGCCACAATATGATAAATATATGAATATAAtgtatactatatcaagaccttggagagtgatttaatatcaaaataaatataaaatatgaatatt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): AAAGATATACATAGAAAGATATTATAGGATTATTTAAAGGAAAAGTTTTGCGAGGAATGCATTTTCAAGGTAAACGTGCTTGAATTAAACAACATAAAGACAGACATTAGCGAACCACTGAGGTTGCTTGCGTTCCTTTAGATTCTATACCATTGATATAAAGGTGAGCATTAATATTTGTTCGAACTTTTGAATATGTATTTAGAATATGAATGTAT
Unaligned ( gi|11 ): CGTGCTTGAATTAAACAACATAAAGACAGACATTAGCGAACCACTGAGGTTGCTTGCGTTCATTTAGATTCTATACCATTGATATAAAGGTGAGCATTAATATTTTTTCGAACTTTTGAATATATATTTAGAATATAAATGTAT
Unaligned ( gi|13 ): CAAAAAGAAATAAAAATCTTGTACATGAAAAATATTGAGAGAAATTACATAGTTTTATGGAAGTTGCTATAATTCAATAACATTTTTGCAGTCATTAGTGAATAATTAAATTTTGCACACAGTC
Unaligned ( gi|14 ): TTTATTGATATGTTCAAAGAGAAATCATTATTACATGCAAATGATGGAAGCAAAAGCATACTCAAATTGAACATGCTATAATTTATATAATGAACATATTGGCAGTCATCAGCAAATT
Alignments
lowQualScore : 111 1111 9999999999999999999999999999999999999999999999999999999 1111 1111111 11111111 222222222222 11111111 11111 111 111 22222222222 1111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4444444444444
lowQualScore : 3 7 0 111 3 6 6 9999 3333333333333333333333333333333333333333333333333333333 7777 3 4444444 22222222 1 5 666666666666 999 1 777 0 0 88888888 3 1 4 66 00000 1 4 1 1 0 000 2 6 0 77 1 77 000 44444444444 4 6 3 888 3 2 1111 1 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 0 0 2222222222222 0 0 0
lowQualScore : . . . ... . . . .... ....................................................... .... . ....... ........ . . ............ ... . ... . . ........ . . . .. ..... . . . . . ... . . . .. . .. ... ........... . . . ... . . .... . ..................................................................................... . . . ............. . . .
lowQualScore : 0 0 8 777 2 7 7 8888 4444444444444444444444444444444444444444444444444444444 5555 3 5555555 11111111 0 5 111111111111 222 0 888 1 4 11111111 4 4 4 11 77777 9 4 7 4 1 999 2 7 7 99 0 99 000 44444444444 8 7 3 222 7 2 8888 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 3 7 0000000000000 8 6 7
consensus : NNNTTNATATACTCAAAAAAAGA---AATAAAAATC-TT-TTA--CATGAAAA--AT---G--GAG-G---AAG--C-TAC----TTCCAT---ATT---GN------CATGCTAT-A--TTTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--C--AT-------CAAA-----------CACT-------CG----GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
Reference ( family-462 ) : NNNTTTATATACTAAAAAAAAGA---AATAAAAATC-TT-TTA--CTTGAAAA--AT---G--GAG-G---AAG--C-TAC----TTCCAT---ATTC--GC------CATGCTAT-A--TTTAACAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCCACATTCCTAC---------T-GATACCATACCGCTANTGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--ANGTGAAGAA-ATACATCTAGAATATG--TGTCTT-TAAAAATTGTATTGC--TGACNATA--GCA---GAT----G------CACTCGAACTTTCGCATTGTNTATGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--C--AT-------CGNA-----------CACT-------CG----GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTGG
gi|1 : ATAAGCTCAAAAAGATA---GATAAA-----TT-CTAAACATGAAAA--GTATTG--GAG-C---AAGTGC-AAA----CTCAAT----TTG--AA------CATGCTAT-AATTTTAACAT------AATATTGACA--------GCCATCATCGAATTACAGGGTTTGCCCACGGTCCTTT---------A-AATACCATACTTTGAATATA---TAAGTAAGA--------AGTTGCTTCCAACAC-TTTTC--AAACG-------TATAT-TAGAAT-------TC-A-GAAAAATTGTATTACTATAGCTATA--GTA---GAT----GTTGTTACATGTAAACTTTCGCACTGTTT---TCCTACGATAACCC-AAT------------TATG--------CA-----AACGAGTC--C--AT-------TGTAAGCTAGTACACCACA-------TGTGTAGATAGGGGG-TGATTTCAAGGTCACGAT---ATA------ATA
gi|10 : atatcaATAT------CATATCAACATATCTCGAGTCATAAGTTAATTAATGGGGTTGTCTACATTTCTAC---------T-GACAC---------AATGTA---C----CA-------------TGCT---AG-------TC--AGCGGCATAA-ATATCTCTAGAATGC---TGACTT-TAAAAGTTGGATTGC--TGGCACTC--GCA---TAT----G------GACcatattcattacctttgtgtatatgttaaatgtcaaaaatttgagagcgatgaaatactaaagaaaaatgatatatattatcatatataacaagtacgttttatctcttgttag
gi|12 : --TTTAACAA------C-TGTAGACA--------ATCATCAGTGATTTATTGGGGTTGTCCACTTTCTTAT---------T-GATACCATACCATTACTTTG---TAAGGCAGA--------AGTTGTTCTTGGCACTTTTTC--AGGGGCATAA-ATATATATAac
gi|13 : AAAAAGA---AATAAAAATC-TT-GTA--CATGAAAA--AT---ATTGAGAG---AAA--T-TACATAGTTTTATGGAAGT-------------TGCTATAA--TTCAATAA------CATTTTTGCA--------GTCATTAGTGAATta
gi|14 : cA---AAGAGAAATCATTATTA--CATGCAAATGAT---G--GAA-GCAAAAG--CATAC----T--CAA---ATTG--AA------CATGCTAT-A--ATTTATATAATGAACATATTGGCA--------GTCATCAGCAAATTaattaaattttgcacacagtc
gi|15 : tttattgatatgttcTAT----TTTGATATA-----CATATTGACA--------GTCATCAGCTAATTACTGGGTTTGTTTTCATTCCCCT---------T-GATACCACACCGGTACTGTA---TAAAGCAGA--------AGTTGC
gi|16 : aGCAAACTACCGGGTTTGTCTACATTCCTAC---------T-GATATCGTACC
gi|2 : ------CATGCTAT-A--GGTCA-AT------GATATTGACA--------GTCATCAATGGATTATCGGATTTTTCCACATTCCTATAGATAGTATTAGATACTATATAACTACTGTACTATAAAGTAGA--------AGTTGTTCCCAGCAC-TTTTC--AGGTGAAGAA-ATTCATCTAGAATATG--TATTTT-AGAAAATTGTATTGC--TGAATATT--TCA---GAT----G------CACCAGAACTTTCGCATTGTTTATGTCCAATGAGAA--T-AATATTATTCAATTATATGAGAATATTCAATTATAA--AACG--C--AC-------CAAA-----------GACT-------TG----GATAAGGGA-TGATTTCAAAGTTACAAT---ATA------ATGTAAATATCAACTTAGc
gi|3 : aaTTGATATACTCAAAAAA-GA---GATAAACATC-AT-TGA--C-------------------G-G---GAA--C--AT----TTCCAT---A-----GT------CATACT------TTTAATAT------CATATAGACA--------GTCACCAGTAAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATATCATAAATGCA---TCAGGCAGA--------AGTCGCTCCCAGCAC-TTTTC--ATGTGAGGAA-TTACATCTACAATATG--TATCTT-TAAAAATTGAATTGC--TGACAATA--GCA---GAT----G------CACTCAAACTATTGCATTGTATATGTTCAAGGAGAA--T-ATT------------TATG--------GA-----AA--AACG--T--AT-------GAAA-----------CACT-------CA----GAATAGGGG-TGATTTCAAAGCCATAAC---ATT------ATGTGAAGATAAACTTAGcgcatactatataaaaagaaattggaaagtgattaaatattttaaaaaaaaataacacgattat
gi|4 : tttAC-TTTTC--AGGTGAAGAA-ATACATCTTGAATATG--TGTCTT-TAAAAA-TGTATTGC--CGATTATA--GCACCTGATTATAT------CACCTGAA-----GCA------------AAC--GAA--TCAAT------------TAT----------------AT--AGCA--C--AT-------CAAA-----------TACT-------CA----GATTAGGGA-TGGTTTCAAATATACGG------G------ATATGAAT-TAAACTTGGgacg
gi|5 : CTCCCTGCAC-TTTTCTTACATATAAAA-ATAGCTC-AGAATATACATATATTCTAAAAATT-TATTAA--TGGCTATA--GCA---GGT----A------TACTTGAACTTTCAAACTATTTGCATATGATGCTAT--C-ATT------------TTTG--------CA-----AA--AGGGTCC--ATTTTAAAACATACGG--------CACCATATTTGCA----GATTTGGAGTTGATTTCTAGATTACAATTGCATATATTGTATATGAACATCAAtgtatactatatcaagaccttggagagtgatttaatatcaaaataaatataaaatatgaatatt
gi|6 : -A--TTAAACAA------CATAAAGACA--------GACATTAGCGAACCACTGAGGTTGCTTGCGTTCCTTT---------A-GATTCTATACCATTGATATA----AAGGT-GAGCATTAATATTTGTTC---GAAC-TTTT----------GAATATGTATTTAGAATATG--gaatgtt
gi|7 : aaagatatacatagaaagatattataggattatttaaaggaaaagttttgcgaggaatgcattttcaaggtaaacgtgcttgaAAAAGATACAAGAAAAGGT-CT-TCA--AATGAAAA--GT---AT-GAG-G---AGG--A-TGC----GT--AT---ACTCCAGCTGTA--CATGCTAT-AA-TTTAACAT------TATATTGACA--------TCCATCGGCAAATTACTGGGGTTGTC----TTCC-A------------GACACCATATCACTAATGTA---TATGACTGA--------TGTTGCTCTCAATAC-TTTTT--AAATATAAGA-ATATATaatgtat
gi|8 : atttatcgatatggtcGAAA--------GTCATCAGCGAATTTCTGAGTTT-----TATTTCTA---------------ACTATATAGCAGATGTA---
gi|8 : AGTTTTATTTC--TAACTATATAGCA---GAT----G------TACTTGAACTTCTGCTCTGTTTATGTTCAATGAGAG--T-ATC------------CATG--------CA-----AA--AGAG--TCAAT-------C--A-----------CACT-------TG----GATTAGGAG-TGATGTCAAAGCCACAAT---ATGATAAATATATGAATATAActtgaacttctgctctgtttatgttcaatgagagtatccatgcaaaagagtcaatcacacttggattaggagtgatgtcaaagccacaatatgataaatatatgaatataatttgagctcatactatataaagaaagtgtat
gi|9 : gaaagtcatcagcgaatttctgTTTATATACTAAAAAAAAGA---AATAAAAATC-TT-TTA--CTTGAAAA--AT---G--GAG-G---AAG--C-TAC----TT-CAT---ATTC--GTATAAAACATGCTATGA--TTAAATAA------CATATTGACA--------GTTATCAGCAACCTACCGGGTTTGTCTACATTCCTAC---------T-CATATCATACCtttgagctcatactatataaagaaagtgtat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CGTGCTTGAATTAAACAACATAAAGACAGACATTAGCGAACCACTGAGGTTGCTTGCGTTCATTTAGATTCTATACCATTGATATAAAGGTGAGCATTAATATTTTTTCGAACTTTTGAATATATATTTAGAATATAAATGTAT
Alignments
lowQualScore : 9999999999999999999999999999999999999999999999999999999999 11111111 1111111 11111111 222222222222 11111111 111 111 22222222222 111 1111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4444444444444
lowQualScore : 1 777 555 99 555 77 1 8888888888888888888888888888888888888888888888888888888888 66 99999999 4 9999999 22222222 1 1 222222222222 999 777 0 0 88888888 3 1 4 66 333 6 1 4 1 0 000 6 0 77 77 000 44444444444 3 333 3 2 1111 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 0 0 2222222222222 0 0
lowQualScore : . ... ... .. ... .. . .......................................................... .. ........ . ....... ........ . . ............ ... ... . . ........ . . . .. ... . . . . . ... . . .. .. ... ........... . ... . . .... . ...................................................................................... . . . ............. . .
lowQualScore : 0 333 999 33 999 99 7 4444444444444444444444444444444444444444444444444444444444 99 22222222 0 0000000 11111111 0 4 333333333333 222 888 1 4 11111111 4 4 4 11 444 9 9 4 4 1 999 7 7 99 99 000 44444444444 7 000 7 2 8888 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 3 7 0000000000000 8 6
consensus : NNNTCGATATGCTCAAAAAA-AGAAAT-A-AAGATCTT-TTA--CATGAAAA--GT-T--G--GAG-G---AA-G--C---TAC----TTCCA---TATT-------GAACA--TGCT--AT-A--T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
Reference ( family-462 ) : NNNTTNATATACTCAAAAAA-AGAAAT-A-AAAATCTT-TTA--CATGAAAA--AT----G--GAG-G---AA-G--C---TAC----TTCCA---TATT-------GN-CA--TGCT--AT-A--T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
gi|1 : TCAATAAGCTCAAAAAG-ATAGAT-A-AA----TT-CTAAACATGAAAA--GTATT-G--GAG-C---AA-GTGC---AAA----CTCAA---T-TT-------GAACA--TGCT--AT-AATT-TTAACAT------AATATTGACA--------GCCATCATCGAATTACAGGGTTTGCCCACGGTCCTTT---------A-AATACCATACTTTGAATATA---TAAGTAAGA--------AGTTGCTTCCAACAC-TTTTC--AAACG-------TATAT-TAGAAT-------TC-A-GAAAAATTGTATTACTATAGCTATA--GTA---GAT----GTTGTTACATGTAAACTTTCGCACTGTTT---TCCTACGATAACCC-AAT------------TATG--------CA-----AACGAGTC--CATTGT---AAGCTAGTACACCACATGTGTA--------------GATAGGGGG-TGATTTCAAGGTCACGAT---ATA------ATA
gi|10 : ataATAT------CATATCAACATATCTCGAGTCATAAGTTAATTAATGGGGTTGTCTACATTTCTAC---------T-GACAC---------AATGTA---C----CA-------------TGCT---AG-------TC--AGCGGCATAA-ATATCTCTAGAATGC---TGACTT-TAAAAGTTGGATTGC--TGGCACTC--GCA---TAT----G------GACcatattcattacctttgtgtatatgttaaatgtcaaaaatttgagagcgatgaaatactaaagaaaaatgatatatattatcatatataacaagtacgttttatctcttgttag
gi|12 : --T-TTAACAA------C-TGTAGACA--------ATCATCAGTGATTTATTGGGGTTGTCCACTTTCTTAT---------T-GATACCATACCATTACTTTG---TAAGGCAGA--------AGTTGTTCTTGGCACTTTTTC--AGGGGCATAA-ATATATATAac
gi|13 : AAAA-AGAAAT-A-AAAATCTT-GTA--CATGAAAA--AT----ATTGAGAG---AA-A--T---TACATAGTTTTA------T-------GG-AAGTTGCT--ATAA--T-TCAATAA------CATTTTTGCA--------GTCATTAGTGAATta
gi|14 : cTTGATATGTTCAAAGA---GAAAT-C-A-----TTATTA--CATGCAAATGAT----G--GAA-GCAAAA-G--CA--TAC----T--CA---AATT-------GAACA--TGCT--AT-A--A-TTTATATAATGAACATATTGGCA--------GTCATCAGCAAATTaattaaattttgcacacagtc
gi|15 : tttaT--AT----T-TTGATATA-----CATATTGACA--------GTCATCAGCTAATTACTGGGTTTGTTTTCATTCCCCT---------T-GATACCACACCGGTACTGTA---TAAAGCAGA--------AGTTGC
gi|16 : aGCAAACTACCGGGTTTGTCTACATTCCTAC---------T-GATATCGTACC
gi|2 : -CA--TGCT--AT-A--GGTCAATG--------ATATTGACA--------GTCATCAATGGATTATCGGATTTTTCCACATTCCTATAGATAGTATTAGATACTATATAACTACTGTACTATAAAGTAGA--------AGTTGTTCCCAGCAC-TTTTC--AGGTGAAGAA-ATTCATCTAGAATATG--TATTTT-AGAAAATTGTATTGC--TGAATATT--TCA---GAT----G------CACCAGAACTTTCGCATTGTTTATGTCCAATGAGAA--T-AATATTATTCAATTATATGAGAATATTCAATTATAA--AACG--CAC--C---AA------AGACT-------TG--------------GATAAGGGA-TGATTTCAAAGTTACAAT---ATA------ATGTAAATATCAACTTAGc
gi|3 : aaTTGATATACTCAAAAAA--GAGAT-A-AACATCAT-TGA--C--------------------G-G---GA-A--C----AT----TTCCA---TA---------GT-CA--TACT--------T-TTAATAT------CATATAGACA--------GTCACCAGTAAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATATCATAAATGCA---TCAGGCAGA--------AGTCGCTCCCAGCAC-TTTTC--ATGTGAGGAA-TTACATCTACAATATG--TATCTT-TAAAAATTGAATTGC--TGACAATA--GCA---GAT----G------CACTCAAACTATTGCATTGTATATGTTCAAGGAGAA--T-ATT------------TATG--------GA-----AA--AACG--TAT--G---AA------ACACT-------CA--------------GAATAGGGG-TGATTTCAAAGCCATAAC---ATT------ATGTGAAGATAAACTTAGcgcatactatataaaaagaaattggaaagtgattaaatattttaaaaaaaaataacacgattat
gi|4 : tttAC-TTTTC--AGGTGAAGAA-ATACATCTTGAATATG--TGTCTT-TAAAAA-TGTATTGC--CGATTATA--GCACCTGATTATAT------CACCTGAA-----GCA------------AAC--GAA--TCAAT------------TAT----------------AT--AGCA--CAT--C---AA------ATACT-------CA--------------GATTAGGGA-TGGTTTCAAATATACGG------G------ATATGAAT-TAAACTTGGgacg
gi|5 : CTCCCTGCAC-TTTTCTTACATATAAAA-ATAGCTC-AGAATATACATATATTCTAAAAATT-TATTAA--TGGCTATA--GCA---GGT----A------TACTTGAACTTTCAAACTATTTGCATATGATGCTAT--C-ATT------------TTTG--------CA-----AA--AGGGTCCAT--TTTAAA------ACATA-------CGGCACCATATTTGCAGATTTGGAGTTGATTTCTAGATTACAATTGCATATATTGTATATGAACATCAAtgtatactatatcaagaccttggagagtgatttaatatcaaaataaatataaaatatgaatatt
gi|6 : ATATAC--ATAGAA-AGATATTATAGGATTAT-TTA--AAGGAAAA--GTTTT-GC-GAG-G---AATG--C----AT----TTTCAAGGTA---------AA-CG--TGCTTGA--A--T-TAAACAA------CATAAAGACA--------GACATTAGCGAACCACTGAGGTTGCTTGCGTTCCTTT---------A-GATTCTATACCATTGATATA----AAGGT-GAGCATTAATATTTGTTC---GAAC-TTTT----------GAATATGTATTTAGAATATG--AATgaatgtt
gi|7 : aaagTCGATATGGTCAAAAGATACAAGA-A-AAGGTCTT-C-A--AATGAAAA--GTATGAG--GAG-G---AT-G--CGTATAC----T-CCA----GCT-------GTACA--TGCT--AT-AA-T-TTAACAT------TATATTGACA--------TCCATCGGCAAATTACTGGGGTTGTCT----TCC-A------------GACACCATATCACTAATGTA---TATGACTGA--------TGTTGCTCTCAATAC-TTTTT--AAATATAAGA-ATATATgtat
gi|8 : atttaGAAA--------GTCATCAGCGAATTTCTGAGTTT-----TATTTCTA---------------ACTATATAGCAGATGTA---
gi|8 : AGTTTTATTTC--TAACTATATAGCA---GAT----G------TACTTGAACTTCTGCTCTGTTTATGTTCAATGAGAG--T-ATC------------CATG--------CA-----AA--AGAG----T--C---AATC----ACACT-------TG--------------GATTAGGAG-TGATGTCAAAGCCACAAT---ATGATAAATATATGAATATAActtgaacttctgctctgtttatgttcaatgagagtatccatgcaaaagagtcaatcacacttggattaggagtgatgtcaaagccacaatatgataaatatatgaatataatttgagctcatactatataaagaaagtgtat
gi|9 : gaaagtcatcagcgaatttctgTTTATATACTAAAAAAA-AGAAAT-A-AAAATCTT-TTA--CTTGAAAA--AT----G--GAG-G---AA-G--C---TAC----TT-CA---TATTCGTATAAAA-CA--TGCT--ATGA--T-TAAATAA------CATATTGACA--------GTTATCAGCAACCTACCGGGTTTGTCTACATTCCTAC---------T-CATATCATACCtttgagctcatactatataaagaaagtgtat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CGTGCTTGAATTAAACAACATAAAGACAGACATTAGCGAACCACTGAGGTTGCTTGCGTTCATTTAGATTCTATACCATTGATATAAAGGTGAGCATTAATATTTTTTCGAACTTTTGAATATATATTTAGAATATAAATGTAT
Alignments
lowQualScore : 6666666666666666666666666666666666666666666666666666 11111111 1111111 11111111 222222222222 11111111 111 111 22222222222 111 1111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4444444444444
lowQualScore : 777 555 99 555 77 1 3333333333333333333333333333333333333333333333333333 99999999 4 9999999 22222222 1 1 222222222222 999 777 0 0 88888888 3 1 4 66 333 6 1 4 1 0 000 6 0 77 77 000 44444444444 3 333 3 2 1111 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 0 0 2222222222222 0 0
lowQualScore : ... ... .. ... .. . .................................................... ........ . ....... ........ . . ............ ... ... . . ........ . . . .. ... . . . . . ... . . .. .. ... ........... . ... . . .... . ...................................................................................... . . . ............. . .
lowQualScore : 333 999 00 999 99 7 7777777777777777777777777777777777777777777777777777 22222222 0 0000000 11111111 0 4 333333333333 222 888 1 4 11111111 4 4 4 11 444 9 9 4 4 1 999 7 7 99 99 000 44444444444 7 000 7 2 8888 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 3 7 0000000000000 8 6
consensus : NNNTCGATATGCTCAAAAAA-AGAAAT-A-AAGATCTT-TTA--CATGAAAA-GTA-T--G--GAG-G---AA-G--C---TAC----TTCCATATT------GAACATGCT--AT-A--T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
Reference ( family-462 ) : NNNTCGATATGCTCAAAAAA-AGAAAT-A-AAGATCTT-TTA--CATGAAAA-GT--T--G--GAG-G---AA-G--C---TAC----TTCCATATT------GAACATGCT--AT-A--T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
gi|1 : TCAATAAGCTCAAAAAG-ATAGAT-A-AA----TT-CTAAACATGAAAA-GTATT--G--GAG-C---AA-GTGC---AAA----CTCAAT-TT------GAACATGCT--AT-AATT-TTAACAT------AATATTGACA--------GCCATCATCGAATTACAGGGTTTGCCCACGGTCCTTT---------A-AATACCATACTTTGAATATA---TAAGTAAGA--------AGTTGCTTCCAACAC-TTTTC--AAACG-------TATAT-TAGAAT-------TC-A-GAAAAATTGTATTACTATAGCTATA--GTA---GAT----GTTGTTACATGTAAACTTTCGCACTGTTT---TCCTACGATAACCC-AAT------------TATG--------CA-----AACGAGTC--CATTGT---AAGCTAGTACACCACATGTGTA--------------GATAGGGGG-TGATTTCAAGGTCACGAT---ATA------ATA
gi|10 : ataATAT------CATATCAACATATCTCGAGTCATAAGTTAATTAATGGGGTTGTCTACATTTCTAC---------T-GACAC---------AATGTA---C----CA-------------TGCT---AG-------TC--AGCGGCATAA-ATATCTCTAGAATGC---TGACTT-TAAAAGTTGGATTGC--TGGCACTC--GCA---TAT----G------GACcatattcattacctttgtgtatatgttaaatgtcaaaaatttgagagcgatgaaatactaaagaaaaatgatatatattatcatatataacaagtacgttttatctcttgttag
gi|12 : --T-TTAACAA------C-TGTAGACA--------ATCATCAGTGATTTATTGGGGTTGTCCACTTTCTTAT---------T-GATACCATACCATTACTTTG---TAAGGCAGA--------AGTTGTTCTTGGCACTTTTTC--AGGGGCATAA-ATATATATAac
gi|13 : AAAA-AGAAAT-A-AAAATCTT-GTA--CATGAAAA-ATA-T--T--GAGAG---AA-A--T---TACATAGTTT--TATG------GAAGTTGCT--ATAA--T-TCAATAA------CATTTTTGCA--------GTCATTAGTGAATta
gi|14 : cTTGATATGTTCAAAGA---GAAAT-C-A-----TTATTA--CATGCAAATGA--T--G--GAA-GCAAAA-G--CA--TAC----T--CAAATT------GAACATGCT--AT-A--A-TTTATATAATGAACATATTGGCA--------GTCATCAGCAAATTaattaaattttgcacacagtc
gi|15 : tttaT--AT----T-TTGATATA-----CATATTGACA--------GTCATCAGCTAATTACTGGGTTTGTTTTCATTCCCCT---------T-GATACCACACCGGTACTGTA---TAAAGCAGA--------AGTTGC
gi|16 : aGCAAACTACCGGGTTTGTCTACATTCCTAC---------T-GATATCGTACC
gi|2 : AACATGCT--AT-A--GGTCAATG--------ATATTGACA--------GTCATCAATGGATTATCGGATTTTTCCACATTCCTATAGATAGTATTAGATACTATATAACTACTGTACTATAAAGTAGA--------AGTTGTTCCCAGCAC-TTTTC--AGGTGAAGAA-ATTCATCTAGAATATG--TATTTT-AGAAAATTGTATTGC--TGAATATT--TCA---GAT----G------CACCAGAACTTTCGCATTGTTTATGTCCAATGAGAA--T-AATATTATTCAATTATATGAGAATATTCAATTATAA--AACG--CAC--C---AA------AGACT-------TG--------------GATAAGGGA-TGATTTCAAAGTTACAAT---ATA------ATGTAAATATCAACTTAGc
gi|3 : TTGATATACTCAAAAAA--GAGAT-A-AACATCAT-TGA--C--------------------G-G---GA-A--C----AT----TTCCATAGT---------CATACT--------T-TTAATAT------CATATAGACA--------GTCACCAGTAAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATATCATAAATGCA---TCAGGCAGA--------AGTCGCTCCCAGCAC-TTTTC--ATGTGAGGAA-TTACATCTACAATATG--TATCTT-TAAAAATTGAATTGC--TGACAATA--GCA---GAT----G------CACTCAAACTATTGCATTGTATATGTTCAAGGAGAA--T-ATT------------TATG--------GA-----AA--AACG--TAT--G---AA------ACACT-------CA--------------GAATAGGGG-TGATTTCAAAGCCATAAC---ATT------ATGTGAAGATAAACTTAGcgcatactatataaaaagaaattggaaagtgattaaatattttaaaaaaaaataacacgattat
gi|4 : tttAC-TTTTC--AGGTGAAGAA-ATACATCTTGAATATG--TGTCTT-TAAAAA-TGTATTGC--CGATTATA--GCACCTGATTATAT------CACCTGAA-----GCA------------AAC--GAA--TCAAT------------TAT----------------AT--AGCA--CAT--C---AA------ATACT-------CA--------------GATTAGGGA-TGGTTTCAAATATACGG------G------ATATGAAT-TAAACTTGGgacg
gi|5 : CTCCCTGCAC-TTTTCTTACATATAAAA-ATAGCTC-AGAATATACATATATTCTAAAAATT-TATTAA--TGGCTATA--GCA---GGT----A------TACTTGAACTTTCAAACTATTTGCATATGATGCTAT--C-ATT------------TTTG--------CA-----AA--AGGGTCCAT--TTTAAA------ACATA-------CGGCACCATATTTGCAGATTTGGAGTTGATTTCTAGATTACAATTGCATATATTGTATATGAACATCAAtgtatactatatcaagaccttggagagtgatttaatatcaaaataaatataaaatatgaatatt
gi|6 : GATATAC--ATAGAA-AGATATTATAGGATTAT-TTA--AAGGAAAA-GT--TTTGC-GAG-G---AATG--C----AT----TTTCAAGGT------AAACGTGCTTGA--A--T-TAAACAA------CATAAAGACA--------GACATTAGCGAACCACTGAGGTTGCTTGCGTTCCTTT---------A-GATTCTATACCATTGATATA----AAGGT-GAGCATTAATATTTGTTC---GAAC-TTTT----------GAATATGTATTTAGAATATG--AATgaatgtt
gi|7 : aaaTCGATATGGTCAAAAGATACAAGA-A-AAGGTCTT-C-A--AATGAAAA-GTA-T--GAGGAG-G---AT-G--CGTATAC----T-CCA-GCT------GTACATGCT--AT-AA-T-TTAACAT------TATATTGACA--------TCCATCGGCAAATTACTGGGGTTGTCT----TCC-A------------GACACCATATCACTAATGTA---TATGACTGA--------TGTTGCTCTCAATAC-TTTTT--AAATATAAGA-ATATATgtat
gi|8 : atttaGAAA--------GTCATCAGCGAATTTCTGAGTTT-----TATTTCTA---------------ACTATATAGCAGATGTA---
gi|8 : AGTTTTATTTC--TAACTATATAGCA---GAT----G------TACTTGAACTTCTGCTCTGTTTATGTTCAATGAGAG--T-ATC------------CATG--------CA-----AA--AGAG----T--C---AATC----ACACT-------TG--------------GATTAGGAG-TGATGTCAAAGCCACAAT---ATGATAAATATATGAATATAActtgaacttctgctctgtttatgttcaatgagagtatccatgcaaaagagtcaatcacacttggattaggagtgatgtcaaagccacaatatgataaatatatgaatataatttgagctcatactatataaagaaagtgtat
gi|9 : gaaagtcatcagcgaatttctgATATACTAAAAAAA-AGAAAT-A-AAAATCTT-TTA--CTTGAAAA-AT-----G--GAG-G---AA-G--C---TAC----TTC-ATATTCGTATAAAACATGCT--ATGA--T-TAAATAA------CATATTGACA--------GTTATCAGCAACCTACCGGGTTTGTCTACATTCCTAC---------T-CATATCATACCtttgagctcatactatataaagaaagtgtat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CGTGCTTGAATTAAACAACATAAAGACAGACATTAGCGAACCACTGAGGTTGCTTGCGTTCATTTAGATTCTATACCATTGATATAAAGGTGAGCATTAATATTTTTTCGAACTTTTGAATATATATTTAGAATATAAATGTAT
Alignments
lowQualScore : 22222222 111 4444444444444444444444444444444 11111111 1111111 11111111 222222222222 11111111 111 111 22222222222 111 1111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4444444444444
lowQualScore : 777 555 99 555 77 1 22222222 5 000 5555555555555555555555555555555 99999999 4 9999999 22222222 1 1 222222222222 999 777 0 0 88888888 3 1 4 66 333 6 1 4 1 0 000 6 0 77 77 000 44444444444 3 333 3 2 1111 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 0 0 2222222222222 0 0
lowQualScore : ... ... .. ... .. . ........ . ... ............................... ........ . ....... ........ . . ............ ... ... . . ........ . . . .. ... . . . . . ... . . .. .. ... ........... . ... . . .... . ...................................................................................... . . . ............. . .
lowQualScore : 333 999 00 999 99 7 66666666 7 000 0000000000000000000000000000000 22222222 0 0000000 11111111 0 4 333333333333 222 888 1 4 11111111 4 4 4 11 444 9 9 4 4 1 999 7 7 99 99 000 44444444444 7 000 7 2 8888 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 3 7 0000000000000 8 6
consensus : NNNTCGATATGCTCAAAAAA-AGAAAT-A-AAGATCTT-TTA--CATGAAAAGTAT-G--GAG-G---AA-G--C---TAC----TTCCATATT------GAACATGCT--AT-A--T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
Reference ( family-462 ) : NNNTCGATATGCTCAAAAAA-AGAAAT-A-AAGATCTT-TTA--CATGAAAAGTAT-G--GAG-G---AA-G--C---TAC----TTCCATATT------GAACATGCT--AT-A--T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
gi|1 : TCAATAAGCTCAAAAAG-ATAGAT-A-AA----TT-CTAAACATGAAAAGTATTG--GAG-C---AA-GTGC---AAA----CTCAAT-TT------GAACATGCT--AT-AATT-TTAACAT------AATATTGACA--------GCCATCATCGAATTACAGGGTTTGCCCACGGTCCTTT---------A-AATACCATACTTTGAATATA---TAAGTAAGA--------AGTTGCTTCCAACAC-TTTTC--AAACG-------TATAT-TAGAAT-------TC-A-GAAAAATTGTATTACTATAGCTATA--GTA---GAT----GTTGTTACATGTAAACTTTCGCACTGTTT---TCCTACGATAACCC-AAT------------TATG--------CA-----AACGAGTC--CATTGT---AAGCTAGTACACCACATGTGTA--------------GATAGGGGG-TGATTTCAAGGTCACGAT---ATA------ATA
gi|10 : ataATAT------CATATCAACATATCTCGAGTCATAAGTTAATTAATGGGGTTGTCTACATTTCTAC---------T-GACAC---------AATGTA---C----CA-------------TGCT---AG-------TC--AGCGGCATAA-ATATCTCTAGAATGC---TGACTT-TAAAAGTTGGATTGC--TGGCACTC--GCA---TAT----G------GACcatattcattacctttgtgtatatgttaaatgtcaaaaatttgagagcgatgaaatactaaagaaaaatgatatatattatcatatataacaagtacgttttatctcttgttag
gi|12 : --T-TTAACAA------C-TGTAGACA--------ATCATCAGTGATTTATTGGGGTTGTCCACTTTCTTAT---------T-GATACCATACCATTACTTTG---TAAGGCAGA--------AGTTGTTCTTGGCACTTTTTC--AGGGGCATAA-ATATATATAac
gi|13 : AAAA-AGAAAT-A-AAAATCTT-GTA--CATGAAAAATAT-T--GAGAG---AA-A--T---TACATAGTTT--TATG------GAAGTTGCT--ATAA--T-TCAATAA------CATTTTTGCA--------GTCATTAGTGAATta
gi|14 : cTTGATATGTTCAAAGA---GAAAT-C-A-----TTATTA--CATGCAAATGAT-G--GAA-GCAAAA-G--CA--TAC----T--CAAATT------GAACATGCT--AT-A--A-TTTATATAATGAACATATTGGCA--------GTCATCAGCAAATTaattaaattttgcacacagtc
gi|15 : tttaT--AT----T-TTGATATA-----CATATTGACA--------GTCATCAGCTAATTACTGGGTTTGTTTTCATTCCCCT---------T-GATACCACACCGGTACTGTA---TAAAGCAGA--------AGTTGC
gi|16 : aGCAAACTACCGGGTTTGTCTACATTCCTAC---------T-GATATCGTACC
gi|2 : AACATGCT--AT-A--GGTCAATG--------ATATTGACA--------GTCATCAATGGATTATCGGATTTTTCCACATTCCTATAGATAGTATTAGATACTATATAACTACTGTACTATAAAGTAGA--------AGTTGTTCCCAGCAC-TTTTC--AGGTGAAGAA-ATTCATCTAGAATATG--TATTTT-AGAAAATTGTATTGC--TGAATATT--TCA---GAT----G------CACCAGAACTTTCGCATTGTTTATGTCCAATGAGAA--T-AATATTATTCAATTATATGAGAATATTCAATTATAA--AACG--CAC--C---AA------AGACT-------TG--------------GATAAGGGA-TGATTTCAAAGTTACAAT---ATA------ATGTAAATATCAACTTAGc
gi|3 : TTGATATACTCAAAAAA--GAGAT-A-AACATCAT-TGA--C-----------------G-G---GA-A--C----AT----TTCCATAGT---------CATACT--------T-TTAATAT------CATATAGACA--------GTCACCAGTAAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATATCATAAATGCA---TCAGGCAGA--------AGTCGCTCCCAGCAC-TTTTC--ATGTGAGGAA-TTACATCTACAATATG--TATCTT-TAAAAATTGAATTGC--TGACAATA--GCA---GAT----G------CACTCAAACTATTGCATTGTATATGTTCAAGGAGAA--T-ATT------------TATG--------GA-----AA--AACG--TAT--G---AA------ACACT-------CA--------------GAATAGGGG-TGATTTCAAAGCCATAAC---ATT------ATGTGAAGATAAACTTAGcgcatactatataaaaagaaattggaaagtgattaaatattttaaaaaaaaataacacgattat
gi|4 : tttAC-TTTTC--AGGTGAAGAA-ATACATCTTGAATATG--TGTCTT-TAAAAA-TGTATTGC--CGATTATA--GCACCTGATTATAT------CACCTGAA-----GCA------------AAC--GAA--TCAAT------------TAT----------------AT--AGCA--CAT--C---AA------ATACT-------CA--------------GATTAGGGA-TGGTTTCAAATATACGG------G------ATATGAAT-TAAACTTGGgacg
gi|5 : CTCCCTGCAC-TTTTCTTACATATAAAA-ATAGCTC-AGAATATACATATATTCTAAAAATT-TATTAA--TGGCTATA--GCA---GGT----A------TACTTGAACTTTCAAACTATTTGCATATGATGCTAT--C-ATT------------TTTG--------CA-----AA--AGGGTCCAT--TTTAAA------ACATA-------CGGCACCATATTTGCAGATTTGGAGTTGATTTCTAGATTACAATTGCATATATTGTATATGAACATCAAtgtatactatatcaagaccttggagagtgatttaatatcaaaataaatataaaatatgaatatt
gi|6 : GATATAC--ATAGAA-AGATATTATAGGATTAT-TTA--AAGGAAAAGTTTTGC-GAG-G---AATG--C----AT----TTTCAAGGT------AAACGTGCTTGA--A--T-TAAACAA------CATAAAGACA--------GACATTAGCGAACCACTGAGGTTGCTTGCGTTCCTTT---------A-GATTCTATACCATTGATATA----AAGGT-GAGCATTAATATTTGTTC---GAAC-TTTT----------GAATATGTATTTAGAATATG--AATgaatgtt
gi|7 : aaaTCGATATGGTCAAAAGATACAAGA-A-AAGGTCTT-C-A--AATGAAAAGTAT-GAGGAG-G---AT-G--CGTATAC----T-CCA-GCT------GTACATGCT--AT-AA-T-TTAACAT------TATATTGACA--------TCCATCGGCAAATTACTGGGGTTGTCT----TCC-A------------GACACCATATCACTAATGTA---TATGACTGA--------TGTTGCTCTCAATAC-TTTTT--AAATATAAGA-ATATATgtat
gi|8 : atttaGAAA--------GTCATCAGCGAATTTCTGAGTTT-----TATTTCTA---------------ACTATATAGCAGATGTA---
gi|8 : AGTTTTATTTC--TAACTATATAGCA---GAT----G------TACTTGAACTTCTGCTCTGTTTATGTTCAATGAGAG--T-ATC------------CATG--------CA-----AA--AGAG----T--C---AATC----ACACT-------TG--------------GATTAGGAG-TGATGTCAAAGCCACAAT---ATGATAAATATATGAATATAActtgaacttctgctctgtttatgttcaatgagagtatccatgcaaaagagtcaatcacacttggattaggagtgatgtcaaagccacaatatgataaatatatgaatataatttgagctcatactatataaagaaagtgtat
gi|9 : gaaagtcatcagcgaatttctgATATACTAAAAAAA-AGAAAT-A-AAAATCTT-TTA--CTTGAAAA--AT-G--GAG-G---AA-G--C---TAC----TTC-ATATTCGTATAAAACATGCT--ATGA--T-TAAATAA------CATATTGACA--------GTTATCAGCAACCTACCGGGTTTGTCTACATTCCTAC---------T-CATATCATACCtttgagctcatactatataaagaaagtgtat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CGTGCTTGAATTAAACAACATAAAGACAGACATTAGCGAACCACTGAGGTTGCTTGCGTTCATTTAGATTCTATACCATTGATATAAAGGTGAGCATTAATATTTTTTCGAACTTTTGAATATATATTTAGAATATAAATGTAT
Alignments
lowQualScore : 22222222 111 4444444444444444444444444444444 11111111 1111111 11111111 222222222222 11111111 111 111 22222222222 111 1111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4444444444444
lowQualScore : 777 555 99 555 77 1 22222222 5 000 5555555555555555555555555555555 99999999 4 9999999 22222222 1 1 222222222222 999 777 0 0 88888888 3 1 4 66 333 6 1 4 1 0 000 6 0 77 77 000 44444444444 3 333 3 2 1111 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 0 0 2222222222222 0 0
lowQualScore : ... ... .. ... .. . ........ . ... ............................... ........ . ....... ........ . . ............ ... ... . . ........ . . . .. ... . . . . . ... . . .. .. ... ........... . ... . . .... . ...................................................................................... . . . ............. . .
lowQualScore : 333 999 00 999 99 7 66666666 7 000 0000000000000000000000000000000 22222222 0 0000000 11111111 0 4 333333333333 222 888 1 4 11111111 4 4 4 11 444 9 9 4 4 1 999 7 7 99 99 000 44444444444 7 000 7 2 8888 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 3 7 0000000000000 8 6
consensus : NNNTCGATATGCTCAAAAAA-AGAAAT-A-AAGATCTT-TTA--CATGAAAAGTAT-G--GAG-G---AA-G--C---TAC----TTCCATATT------GAACATGCT--AT-A--T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
Reference ( family-462 ) : NNNTCGATATGCTCAAAAAA-AGAAAT-A-AAGATCTT-TTA--CATGAAAAGTAT-G--GAG-G---AA-G--C---TAC----TTCCATATT------GAACATGCT--AT-A--T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
gi|1 : TCAATAAGCTCAAAAAG-ATAGAT-A-AA----TT-CTAAACATGAAAAGTATTG--GAG-C---AA-GTGC---AAA----CTCAAT-TT------GAACATGCT--AT-AATT-TTAACAT------AATATTGACA--------GCCATCATCGAATTACAGGGTTTGCCCACGGTCCTTT---------A-AATACCATACTTTGAATATA---TAAGTAAGA--------AGTTGCTTCCAACAC-TTTTC--AAACG-------TATAT-TAGAAT-------TC-A-GAAAAATTGTATTACTATAGCTATA--GTA---GAT----GTTGTTACATGTAAACTTTCGCACTGTTT---TCCTACGATAACCC-AAT------------TATG--------CA-----AACGAGTC--CATTGT---AAGCTAGTACACCACATGTGTA--------------GATAGGGGG-TGATTTCAAGGTCACGAT---ATA------ATA
gi|10 : ataATAT------CATATCAACATATCTCGAGTCATAAGTTAATTAATGGGGTTGTCTACATTTCTAC---------T-GACAC---------AATGTA---C----CA-------------TGCT---AG-------TC--AGCGGCATAA-ATATCTCTAGAATGC---TGACTT-TAAAAGTTGGATTGC--TGGCACTC--GCA---TAT----G------GACcatattcattacctttgtgtatatgttaaatgtcaaaaatttgagagcgatgaaatactaaagaaaaatgatatatattatcatatataacaagtacgttttatctcttgttag
gi|12 : --T-TTAACAA------C-TGTAGACA--------ATCATCAGTGATTTATTGGGGTTGTCCACTTTCTTAT---------T-GATACCATACCATTACTTTG---TAAGGCAGA--------AGTTGTTCTTGGCACTTTTTC--AGGGGCATAA-ATATATATAac
gi|13 : AAAA-AGAAAT-A-AAAATCTT-GTA--CATGAAAAATAT-T--GAGAG---AA-A--T---TACATAGTTT--TATG------GAAGTTGCT--ATAA--T-TCAATAA------CATTTTTGCA--------GTCATTAGTGAATta
gi|14 : cTTGATATGTTCAAAGA---GAAAT-C-A-----TTATTA--CATGCAAATGAT-G--GAA-GCAAAA-G--CA--TAC----T--CAAATT------GAACATGCT--AT-A--A-TTTATATAATGAACATATTGGCA--------GTCATCAGCAAATTaattaaattttgcacacagtc
gi|15 : tttaT--AT----T-TTGATATA-----CATATTGACA--------GTCATCAGCTAATTACTGGGTTTGTTTTCATTCCCCT---------T-GATACCACACCGGTACTGTA---TAAAGCAGA--------AGTTGC
gi|16 : aGCAAACTACCGGGTTTGTCTACATTCCTAC---------T-GATATCGTACC
gi|2 : AACATGCT--AT-A--GGTCAATG--------ATATTGACA--------GTCATCAATGGATTATCGGATTTTTCCACATTCCTATAGATAGTATTAGATACTATATAACTACTGTACTATAAAGTAGA--------AGTTGTTCCCAGCAC-TTTTC--AGGTGAAGAA-ATTCATCTAGAATATG--TATTTT-AGAAAATTGTATTGC--TGAATATT--TCA---GAT----G------CACCAGAACTTTCGCATTGTTTATGTCCAATGAGAA--T-AATATTATTCAATTATATGAGAATATTCAATTATAA--AACG--CAC--C---AA------AGACT-------TG--------------GATAAGGGA-TGATTTCAAAGTTACAAT---ATA------ATGTAAATATCAACTTAGc
gi|3 : TTGATATACTCAAAAAA--GAGAT-A-AACATCAT-TGA--C-----------------G-G---GA-A--C----AT----TTCCATAGT---------CATACT--------T-TTAATAT------CATATAGACA--------GTCACCAGTAAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATATCATAAATGCA---TCAGGCAGA--------AGTCGCTCCCAGCAC-TTTTC--ATGTGAGGAA-TTACATCTACAATATG--TATCTT-TAAAAATTGAATTGC--TGACAATA--GCA---GAT----G------CACTCAAACTATTGCATTGTATATGTTCAAGGAGAA--T-ATT------------TATG--------GA-----AA--AACG--TAT--G---AA------ACACT-------CA--------------GAATAGGGG-TGATTTCAAAGCCATAAC---ATT------ATGTGAAGATAAACTTAGcgcatactatataaaaagaaattggaaagtgattaaatattttaaaaaaaaataacacgattat
gi|4 : tttAC-TTTTC--AGGTGAAGAA-ATACATCTTGAATATG--TGTCTT-TAAAAA-TGTATTGC--CGATTATA--GCACCTGATTATAT------CACCTGAA-----GCA------------AAC--GAA--TCAAT------------TAT----------------AT--AGCA--CAT--C---AA------ATACT-------CA--------------GATTAGGGA-TGGTTTCAAATATACGG------G------ATATGAAT-TAAACTTGGgacg
gi|5 : CTCCCTGCAC-TTTTCTTACATATAAAA-ATAGCTC-AGAATATACATATATTCTAAAAATT-TATTAA--TGGCTATA--GCA---GGT----A------TACTTGAACTTTCAAACTATTTGCATATGATGCTAT--C-ATT------------TTTG--------CA-----AA--AGGGTCCAT--TTTAAA------ACATA-------CGGCACCATATTTGCAGATTTGGAGTTGATTTCTAGATTACAATTGCATATATTGTATATGAACATCAAtgtatactatatcaagaccttggagagtgatttaatatcaaaataaatataaaatatgaatatt
gi|6 : GATATAC--ATAGAA-AGATATTATAGGATTAT-TTA--AAGGAAAAGTTTTGC-GAG-G---AATG--C----AT----TTTCAAGGT------AAACGTGCTTGA--A--T-TAAACAA------CATAAAGACA--------GACATTAGCGAACCACTGAGGTTGCTTGCGTTCCTTT---------A-GATTCTATACCATTGATATA----AAGGT-GAGCATTAATATTTGTTC---GAAC-TTTT----------GAATATGTATTTAGAATATG--AATgaatgtt
gi|7 : aaaTCGATATGGTCAAAAGATACAAGA-A-AAGGTCTT-C-A--AATGAAAAGTAT-GAGGAG-G---AT-G--CGTATAC----T-CCA-GCT------GTACATGCT--AT-AA-T-TTAACAT------TATATTGACA--------TCCATCGGCAAATTACTGGGGTTGTCT----TCC-A------------GACACCATATCACTAATGTA---TATGACTGA--------TGTTGCTCTCAATAC-TTTTT--AAATATAAGA-ATATATgtat
gi|8 : atttaGAAA--------GTCATCAGCGAATTTCTGAGTTT-----TATTTCTA---------------ACTATATAGCAGATGTA---
gi|8 : AGTTTTATTTC--TAACTATATAGCA---GAT----G------TACTTGAACTTCTGCTCTGTTTATGTTCAATGAGAG--T-ATC------------CATG--------CA-----AA--AGAG----T--C---AATC----ACACT-------TG--------------GATTAGGAG-TGATGTCAAAGCCACAAT---ATGATAAATATATGAATATAActtgaacttctgctctgtttatgttcaatgagagtatccatgcaaaagagtcaatcacacttggattaggagtgatgtcaaagccacaatatgataaatatatgaatataatttgagctcatactatataaagaaagtgtat
gi|9 : gaaagtcatcagcgaatttctgATATACTAAAAAAA-AGAAAT-A-AAAATCTT-TTA--CTTGAAAA--AT-G--GAG-G---AA-G--C---TAC----TTC-ATATTCGTATAAAACATGCT--ATGA--T-TAAATAA------CATATTGACA--------GTTATCAGCAACCTACCGGGTTTGTCTACATTCCTAC---------T-CATATCATACCtttgagctcatactatataaagaaagtgtat
blockSeqs : ATA TAT AA ATT . A GTTTTGC A CAA GCTACTTCATATTCGTATAA ATAA G TAATGAA TATCTCGA T A TAGATAGTATTA ATT CTA GCATTAAT T C T TT GCG C T T C ACA C . TA CCT TATAT T ATG C T TC A ATTATTCAATTATATGAGAATATTCAATTATAAAACGCACCAAAGACTTG T TTGCATATATTGT
blockSeqs : AA A AC GT . A GTATGAG . . ATTACATAGTTTTATGG TGAA . TA . T A CT GGT . . C C . . GGG C T . A G . . . . G T ATG T G T T TTTGCAAAAGGGTCCATTTTAAAACATACGGCACCATATTTGCA . TATGATAAAT
blockSeqs : AA C GG TG . A ATATT . . GCGTATACTCCAGCTG ATAA . T . T T TT ACT . . C C . . GGT A G . C G . . . . G C GCA A C T A TATGGAAAAACGTATGAAACACTCA . TATA
blockSeqs : AA A AG TT . A TGATG . . TGCATTTTCAAGGTA ATGA . A . C A TT ATA . . C C . . TGT A G . C G . . . . G C ATG T T C T CATGCAAAAGAGTCAATCACACTTG . CATT
blockSeqs : A A AA TT . T ATG . . GCATACTCAAATTG ATA . A . C A CT ATT . . T A . . GGT A G . C G . . . . A . . . T T T TATATAGCACATCAAATACTCA . G
blockSeqs : . A . C . . . . . ACATTTCCATAGT ATA . T . C A TT ACT . . . T . . CAT T A . C . . . . G
blockSeqs : AT . A . T G TA GCA . . . . . . AAT T G . T
blockSeqs : . . T . T A CT . . . . . . A .
blockSeqs : . A . T . .
blockSeqs : . . C . .
blockSeqs : .
blockSeqCons : AG ** GTTG**** GCATATTCGTANTG***************** ATA***** G** ** G********** ACG T***
originalCons : NNNTCGATATGCTCAAAAAA-AGAAAT-A-AAGATCTT-TTA--CATGAAAAGTAT-G--GAG-G---AA-G--C---TAC----TTCCATATT------GAACATGCT--AT-A--T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
finalCons : NNNTCGATATGCTCAAAAAA-AGAAAT-A-AAGATCTT-TTA--CATGAAAAGTTG----GAG-G---AAGCATATTCGTANTG-----------------AACATGCTATA-----T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GATG----------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAAT---ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CGTGCTTGAATTAAACAACATAAAGACAGACATTAGCGAACCACTGAGGTTGCTTGCGTTCATTTAGATTCTATACCATTGATATAAAGGTGAGCATTAATATTTTTTCGAACTTTTGAATATATATTTAGAATATAAATGTAT
Alignments
lowQualScore : 444444444444 111 222222222222 11 11111111 1111111 11111111 222222222222 11111111 111 111 22222222222 111 1111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4444444444444
lowQualScore : 777 555 99 555 77 1 555555555555 000 222222222222 77 22 1 1 99999999 4 9999999 22222222 1 1 222222222222 999 777 0 0 88888888 3 1 4 66 333 6 1 4 1 0 000 6 0 77 77 000 44444444444 3 333 3 2 1111 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 0 0 2222222222222 0 0
lowQualScore : ... ... .. ... .. . ............ ... ............ .. .. . . ........ . ....... ........ . . ............ ... ... . . ........ . . . .. ... . . . . . ... . . .. .. ... ........... . ... . . .... . ...................................................................................... . . . ............. . .
lowQualScore : 333 999 00 999 99 7 666666666666 000 444444444444 99 11 0 7 22222222 0 0000000 11111111 0 4 333333333333 222 888 1 4 11111111 4 4 4 11 444 9 9 4 4 1 999 7 7 99 99 000 44444444444 7 000 7 2 8888 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 3 7 0000000000000 8 6
consensus : NNNTCGATATGCTCAAAAAA-AGAAAT-A-AAGATCTT-TTA--CATGAAAA--GT--T--G--GAGG---AA--G--C------ATAT--TCANATTGAACATGCT--AT-A--T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
Reference ( family-462 ) : NNNTCGATATGCTCAAAAAA-AGAAAT-A-AAGATCTT-TTA--CATGAAAA--GT--T--G--GAGG---AA--G--C------ATAT--TCGTANTGAACATGCT--AT-A--T-TTAATAT------CATATTGACA--------GTCATCAGCGAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATACCGCTAATGTA---TAAGGCAGA--------AGTTGCTCCCAGCAC-TTTTC--AGGTGNAGAA-ATATATCTAGAATATG--TATCTT-TAAAAATTGTATTGC--TGGCTATA--GCA---GAT----G------CACTTGAACTTTCGCACTGTTTACGTCCAACGAGAA--T-ANT------------TATG--------CA-----AA--AGCG--CAT--C---AA------ACACT-------CG--------------GATTAGGGG-TGATTTCAAAGTCACGAT---ATA------ATATGAATATAAACTTAG
gi|1 : TCAATAAGCTCAAAAAG-ATAGAT-A-AA----TT-CTAAACATGAAAA--GTATT--G--GAGC---AA--GTGC------AAAC--TCAATTTGAACATGCT--AT-AATT-TTAACAT------AATATTGACA--------GCCATCATCGAATTACAGGGTTTGCCCACGGTCCTTT---------A-AATACCATACTTTGAATATA---TAAGTAAGA--------AGTTGCTTCCAACAC-TTTTC--AAACG-------TATAT-TAGAAT-------TC-A-GAAAAATTGTATTACTATAGCTATA--GTA---GAT----GTTGTTACATGTAAACTTTCGCACTGTTT---TCCTACGATAACCC-AAT------------TATG--------CA-----AACGAGTC--CATTGT---AAGCTAGTACACCACATGTGTA--------------GATAGGGGG-TGATTTCAAGGTCACGAT---ATA------ATA
gi|10 : ataATAT------CATATCAACATATCTCGAGTCATAAGTTAATTAATGGGGTTGTCTACATTTCTAC---------T-GACAC---------AATGTA---C----CA-------------TGCT---AG-------TC--AGCGGCATAA-ATATCTCTAGAATGC---TGACTT-TAAAAGTTGGATTGC--TGGCACTC--GCA---TAT----G------GACcatattcattacctttgtgtatatgttaaatgtcaaaaatttgagagcgatgaaatactaaagaaaaatgatatatattatcatatataacaagtacgttttatctcttgttag
gi|12 : --T-TTAACAA------C-TGTAGACA--------ATCATCAGTGATTTATTGGGGTTGTCCACTTTCTTAT---------T-GATACCATACCATTACTTTG---TAAGGCAGA--------AGTTGTTCTTGGCACTTTTTC--AGGGGCATAA-ATATATATAac
gi|13 : AAAA-AGAAAT-A-AAAATCTT-GTA--CATGAAAAATAT--T--GA-GAGA---AATTA--C------ATAG--TTTTATGGAAGTTGCT--ATAA--T-TCAATAA------CATTTTTGCA--------GTCATTAGTGAATta
gi|14 : cTTGATATGTTCAAAGA---GAAAT-C-A-----TTATTA--CATGCAAAT-GA--T--G--GAAGCAAAA--G--C------ATAC--TCAAATTGAACATGCT--AT-A--A-TTTATATAATGAACATATTGGCA--------GTCATCAGCAAATTaattaaattttgcacacagtc
gi|15 : tttaT--AT----T-TTGATATA-----CATATTGACA--------GTCATCAGCTAATTACTGGGTTTGTTTTCATTCCCCT---------T-GATACCACACCGGTACTGTA---TAAAGCAGA--------AGTTGC
gi|16 : aGCAAACTACCGGGTTTGTCTACATTCCTAC---------T-GATATCGTACC
gi|2 : AACATGCT--AT-A--GGTCAATG--------ATATTGACA--------GTCATCAATGGATTATCGGATTTTTCCACATTCCTATAGATAGTATTAGATACTATATAACTACTGTACTATAAAGTAGA--------AGTTGTTCCCAGCAC-TTTTC--AGGTGAAGAA-ATTCATCTAGAATATG--TATTTT-AGAAAATTGTATTGC--TGAATATT--TCA---GAT----G------CACCAGAACTTTCGCATTGTTTATGTCCAATGAGAA--T-AATATTATTCAATTATATGAGAATATTCAATTATAA--AACG--CAC--C---AA------AGACT-------TG--------------GATAAGGGA-TGATTTCAAAGTTACAAT---ATA------ATGTAAATATCAACTTAGc
gi|3 : TTGATATACTCAAAAAA--GAGAT-A-AACATCAT-TGA--C---------------------GG---GA--A--C------ATTT--CCATAGT---CATACT--------T-TTAATAT------CATATAGACA--------GTCACCAGTAAATTACCGGGTTTGTCTACATTCCTAT---------T-GATACCATATCATAAATGCA---TCAGGCAGA--------AGTCGCTCCCAGCAC-TTTTC--ATGTGAGGAA-TTACATCTACAATATG--TATCTT-TAAAAATTGAATTGC--TGACAATA--GCA---GAT----G------CACTCAAACTATTGCATTGTATATGTTCAAGGAGAA--T-ATT------------TATG--------GA-----AA--AACG--TAT--G---AA------ACACT-------CA--------------GAATAGGGG-TGATTTCAAAGCCATAAC---ATT------ATGTGAAGATAAACTTAGcgcatactatataaaaagaaattggaaagtgattaaatattttaaaaaaaaataacacgattat
gi|4 : tttAC-TTTTC--AGGTGAAGAA-ATACATCTTGAATATG--TGTCTT-TAAAAA-TGTATTGC--CGATTATA--GCACCTGATTATAT------CACCTGAA-----GCA------------AAC--GAA--TCAAT------------TAT----------------AT--AGCA--CAT--C---AA------ATACT-------CA--------------GATTAGGGA-TGGTTTCAAATATACGG------G------ATATGAAT-TAAACTTGGgacg
gi|5 : CTCCCTGCAC-TTTTCTTACATATAAAA-ATAGCTC-AGAATATACATATATTCTAAAAATT-TATTAA--TGGCTATA--GCA---GGT----A------TACTTGAACTTTCAAACTATTTGCATATGATGCTAT--C-ATT------------TTTG--------CA-----AA--AGGGTCCAT--TTTAAA------ACATA-------CGGCACCATATTTGCAGATTTGGAGTTGATTTCTAGATTACAATTGCATATATTGTATATGAACATCAAtgtatactatatcaagaccttggagagtgatttaatatcaaaataaatataaaatatgaatatt
gi|6 : GATATAC--ATAGAA-AGATATTATAGGATTAT-TTA--AAGGAAAA--GT--TTTGC-GAGG---AAT-G--C------ATTT--TCAAGGTAAACGTGCTTGA--A--T-TAAACAA------CATAAAGACA--------GACATTAGCGAACCACTGAGGTTGCTTGCGTTCCTTT---------A-GATTCTATACCATTGATATA----AAGGT-GAGCATTAATATTTGTTC---GAAC-TTTT----------GAATATGTATTTAGAATATG--AATgaatgtt
gi|7 : aaaTCGATATGGTCAAAAGATACAAGA-A-AAGGTCTT-C-A--AATGAAAA--GTA-T--GAGGAGG---AT--G--C------GTATACTCCAGCTGTACATGCT--AT-AA-T-TTAACAT------TATATTGACA--------TCCATCGGCAAATTACTGGGGTTGTCT----TCC-A------------GACACCATATCACTAATGTA---TATGACTGA--------TGTTGCTCTCAATAC-TTTTT--AAATATAAGA-ATATATgtat
gi|8 : atttaGAAA--------GTCATCAGCGAATTTCTGAGTTT-----TATTTCTA---------------ACTATATAGCAGATGTA---
gi|8 : AGTTTTATTTC--TAACTATATAGCA---GAT----G------TACTTGAACTTCTGCTCTGTTTATGTTCAATGAGAG--T-ATC------------CATG--------CA-----AA--AGAG----T--C---AATC----ACACT-------TG--------------GATTAGGAG-TGATGTCAAAGCCACAAT---ATGATAAATATATGAATATAActtgaacttctgctctgtttatgttcaatgagagtatccatgcaaaagagtcaatcacacttggattaggagtgatgtcaaagccacaatatgataaatatatgaatataatttgagctcatactatataaagaaagtgtat
gi|9 : gaaagtcatcagcgaatttctgATATACTAAAAAAA-AGAAAT-A-AAAATCTT-TTA--CTTGAAAA--AT-----G--GAGG---AA--G--CTACTTCATAT--TCGTATAAAACATGCT--ATGA--T-TAAATAA------CATATTGACA--------GTTATCAGCAACCTACCGGGTTTGTCTACATTCCTAC---------T-CATATCATACCtttgagctcatactatataaagaaagtgtat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CGTGCTTGAATTAAACAACATAAAGACAGACATTAGCGAACCACTGAGGTTGCTTGCGTTCATTTAGATTCTATACCATTGATATAAAGGTGAGCATTAATATTTTTTCGAACTTTTGAATATATATTTAGAATATAAATGTAT