lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 4 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 1 8888888888888888 11111 111 1111111 1111111 6666666666666666666666666666666666666 22222222 11 6666666666666 333333 33333333 44444444444 2222222222 11 11 777777777 5555555 11 11111111 2222222222222222 1111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 555555 2 111
lowQualScore : 7 0 6 5 6 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 888 77 3 6 3 0 3 66 0 3 7777777777777777 44444 6 0 2 4 55 66 2 88888 5 1 333 5 8888888 4444444 3 6666666666666666666666666666666666666 66 66 8 55555555 11 4 5 7777777777777 1 000000 666 66666666 1 0 66666666666 6 4444444444 33 8 11 888888888 1 0000000 77 2 5 88888888 5 5 0000000000000000 5 0 7 0000 5 5 5 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 222222 4 4 6 888
lowQualScore : . . . . . ............................................................................................... ... .. . . . . . .. . . ................ ..... . . . . .. .. . ..... . . ... . ....... ....... . ..................................... .. .. . ........ .. . . ............. . ...... ... ........ . . ........... . .......... .. . .. ......... . ....... .. . . ........ . . ................ . . . .... . . . .................................................................................... . ...... . . . ...
lowQualScore : 0 0 0 5 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 000 00 0 0 3 7 3 77 7 3 0000000000000000 33333 8 4 2 4 33 22 0 66666 0 0 999 0 7777777 6666666 0 8888888888888888888888888888888888888 99 99 5 55555555 99 8 7 0000000000000 0 333333 333 55555555 0 7 33333333333 7 0000000000 00 0 00 888888888 0 3333333 99 1 7 00000000 7 7 6666666666666666 7 7 0 0000 4 0 7 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 333333 0 7 0 000
consensus : NNNTAAATCGATTTTAATATAAAG--A-GTAAATACCTCNCGTGCGANTCANTTACGANCTGNTNTTTTGGTGTGTNTNTTCTTTNNTTTCTTATNATATTGAAA---AT--------ATNCGCAANNTNCCTGTTCAAA-TATCGTTA-TTTTCAGAAACGA-ATGACTGAA-TNC-TGC--CCCTT-CTTA-TGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCT-AANAATA-AATATG-AT-TAATGTAGTTT---TAAAAATACCAA-AAATCGGGGAGGGGAC----GGT---G---CTT-----TATCTC--AA--TCAG--AANT------TTAGGAA--TTTGTT-TACAAGCGGT-----------GAAACAATTTT---ACGTTTGAATT---C--TACAGCATGAATTA---AAACTTGAAAAG-GTAAAT-----CAAATGCTT-GTATAA--GAGTTCACG-G---AGCGATTTACAA---AAGAATCTTG-AAANT-TCGA-CATT-GGT-AAAA-TT-GTTAAA-G-AG----CAGC-GACACNTGCG---GGNAA-AG-GACAC-----ACA---GA---GTTTGTA--------ACCCCCTC-CT---------C-CG-GAGC-AAACT-------ATCTTTAAAGAAACACACATGGCAGCG-TGGCATGTATAAAATAACGAAGATTCGTGATCTTCT-AGGTCAACAAGTTAAACTTA
Reference ( gi|2 ) : ATGTATATC-ATTTTGATACAAAGCGATGTAAA-ATCTTATGTGAAATTCATTT-TGAA---ATGTTC------GTTTAA-CTTTGATT-CTTATAATATTGAAAGAAATCCAGGTAAATACACAAAATACTTGTTCAAA-TGTCGTTA-TTTCTAGAAACGA-ATGACTGAA-TGCTTGT--TTCTT-CTTA-TGAAGATGTTGCTAAAATGCGGAACGGAA-AA-CGGAACGAAATCT-AAGAATA-AATATC-AT-TAATGTAGTTT---TAAAAATGCCAC-AAATCGGGGAGGGGAT----GGT---G---CTT-----TATCTT--AA--TCAG--AAGT------T-AGGAA--TTTATT-TACAAGCGTT-----------GAAACAATTTT---TTATTTGAATT---G--TACAGCATGGATTA---AAATTTGAAAAG-GTACAT-----TAAATAGTT-GTATAA--AAGTTCACATGTCTAGCGATTTACAA-GAAAGAATCTTG-GAAAT-TCGG-CA-T-GGT-AAAA-TT-GTTAAA-G-AG----CAGC-GACACTTGCA---GGCAA-AG-AACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CG-GAG--AAACT-------ATC--------AACACACCTGACAGTA-TCGTATGTATAAAATAATGAAGATTCATGAACTTTTCAAGTCAACAAGTTAAACTTA
gi|1 : TAAATCGATTTTAA-ATAAAG--A-GTAAA--CCTTCCGTGCAAATCATTTACGAC---TTTTTT------ATATA---TTTGGTTTCTTATTATATTAAAA--------------TACGCAAACTCCCTGTTATAA-TATTGCTA-TTTTCAGAACCGA-ATGACTGAATTGC-TGC--TTCTT-CTTA-TAACGATGTTGCTAAAATGTAGAACGGAA-AA-GGGAACAAAATCT-AAAAATA-AATATC-ATATAA---A-------TATAAATACCAA-AAATGGGGG-----------GGT---G---CTT-----TATTTT--AA--TTAG--AATT------T-AGTAA--TTTGTT-TGCAAGCG------------------------------TTTGAATT---C--TACAGCATGAATCA---AAACTTTAAAAC-GTAAAT-----CAAATGCTT-GTACAA--GAGTTTACGTGTCTAGCGATTTAC-----AAGAATCTTGAAAAAT-TCGA-CATT-GGT-AAAA-TT-GTTAAA-G-AG----CAGC-GACACTTGCA---GGCAA-AG-GACAC-----ACG---GGGGCGTGGGGG--------A------C-TT---------C-CA-GAGC-AAAC--------ATCTTTAAAGAAACACACATGACAGC---------------ATAAGGAAGGTTCGTGATCTTCT------AACAAGTTAAACTTA
gi|5 : aATATAAAG----ATAAATATTTCAT-TAAGATTCAATT-TGAACTGATGTTTTGGTGTGTTTTTTCTTTTTTT-TTTATAAT--TGAAA---AT--------ATTTGCAATATACCTGTTCAAA-TATCGTTATTTTCCAGAAACAA-ATGACGGAA-TA-TTACCACCCTTGCTTATTGCAG-TGTTTTTAAAATGCGTAACGG--------------AATCT-TACAATA-ATTATG-AT-TAATTTAG-TT---TAGAATTACCAA-AAACCGAGGA----AA----GGT---G---CTT-----TATTTC--AT--TC-G--AAAT------A-AAAAA--TCTAtagtgatcgatttaatcatgtttatttacctaacagaaacttggtgtccattgcactgcaatcctaaataatagctaagacttatagcagtat
gi|3 : aatagatgttTATCCAAACTGTCGTCT-TTTTCAGAAAAAAGATGGCTGAA-GTCAAG---------CCTA-AGACGATGTTGTTTAAACGCTGAACCGAACAA-CGGAACGAA-TC--AAAAATACAATATG-AT-TA-TGTAGTTC---ATAAAATAACAA-AAATGGGGGGGGGG
gi|18 : cgGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGGAAgggggggggggggggggggggggggggggacttccggcttcactttaaattgaaatcagaattttaggaaatgtgtttacagcgttttttaaagtttgaaattatattaatcatttgaattctacagcatgaattaaaagtaaatcaatgcttgtataagagtttttacaatgaagaatcttgaaaatctcggcattggtaaattgttcttgcgggcaaaagactcacaaagtttgtaaaaccaacaccccctctttccggagaaacgtcttttaaatcacacacaggaacagca
gi|16 : GGTGTTGCTAAAACACAGAACGGAA-AA-CGGAACGAAACCCGGAAAATA-TGTGTCTAT-T-ATGTcag
gi|9 : TTGCTAAAATATGGAAGGGAA-AAATGGAACAGCATTT-AAGAATC-AGAATG-AT-TAATGTAGCTA---CAAAAAC----------TGGGGAAAATAT----GTT---TTTTCTT-----CATTTG--AA--TCAA--AAGT------TTAGGAA--TTTTTT-TAttt
gi|4 : TGCTAAAACACAAAATGGAA-AA-CATA-CATATTTT-AACAATA-AATATG-AT-AAATATAGTTTAAATGAGAAAACCAC----TAGGTAAAAGGATTA--AGTCT-A---CTCAAGTCTA-CTC--AAATTAAA--AAAT------T-AGGAA--TTTGTAATACAAGTGGT-----------GAAAGAATTGT---ATGTTAGAATT------T----CATGGAATA---G---TT-AAAAG-GTAAGA-----TAAGTGTTT-GTATAAGAAATTTCA---G---AGCGATTTACAA-AAA----TCTTG--AAAT-TT---CA-T-GGT-AAAAATT-ATTAAA-G-AG----CAGC-GACACCTGTA---GGGAA-AG-ACTAC-----GTT---GA---G-TTGTA--------actaataataaaacatctgcaccataaattgataaaattaagcaaaaatctaatgagtttgcaaagcattttacaagaatattgat
gi|10 : TGCTAAAACGTTGAATGGAA-AA-TGGAAC-----------------------AT-TAATGTAGCT------AAGACAACACCAAATCGGGCAG---AC----A-T---G---CT---------CTC--AA--TCGGGCAAATATACTCT-AAGAAGATTTATT-TACAAGCGTTTTTTTTTAAA-GAAGCAATTTTATCTCAT---AATT---T--GGCATCATAAATTGATTAAGCTTGCAAAGTGTAttgcaggagtaaaacatccttaa
gi|15 : GAACAGGA-AA-TGTAACGAAACCT-AATAGTA-AATG---AT-TGATGTAGTCT---AAAAAATATTAA-AAAT
gi|8 : gatT---TAAAAATACCAA-ACACCGGGG----GAA----AGT---G---CTT-----AATCGA--AA--TCAA--AATT------C-AGGAA--TTTGTT-TACAAGCGGT-----------GGAACAATTTT---ATATTTAAATT---C--TACAGCATGAATTA---A----TGAAAAG-GTTAGT-----CAAATGCTT-CTATAA--GAGTTAACA-G---AGCGATTTACAATG-----ATTTTG-AAAAT-TCGA-TATT-GGT-AAAA-TT----------AC----CAGC-GACCCATGCG---GGGAA-A
gi|3 : gGGGGGGGGGACTTCCGGCTTCA---CTT-----TAAATTGAAA--TCAG--AATT------TTAGGAAA-TGTGTT-TACA-GCGTTTTTTAAAGTTTGAAATTATATTAA-TCATTTGAATT---C--TACAGCATGAATTA---AAA----------GTAAAT-----C-AATGCTT-GTATAA--GAGTT--------------TTTACAA-TGAAGAATCTTG-AAAATCTCGG-CATT-GGT--AAA-TT-GTT---------------------CTTGCG---GGCAA-AA-GACTC-----ACA---AA---GTTTGTAAAACCAACACCCCCTCTTT---------C-CG-GAG--AAACaga
gi|6 : cgtatccaaactgtcgtctttttcagaaaaaagatggctgaagtcaagcctaagacgatgttgtttaaacgctgaaccgaacaacggaacgaatcaaaaatacaatatgattatgtagttcataaaataacaaaaatggggggggggggggggggggggggggggggT---G---CTT-----T---TT--AA--TCAA--AATT------TTAGGAG------------AAGCGGT-----------GAAACAATTTT---ATCTCACAATTCAAGACTCCAA-ACGGATTA------TTTGTACAG-TTACATGTATGTATCTAGTTTGTATAC--AAGTTCTCA----AAGCGTGTTCC-----AAGAATCTTG-TAATT-T-----------T-AACA-TT-G--AAG-G-AGGAGTTAGC-GA-----GCAGAGGGGAA-AG-AACACATTTTACAAAGGG---GTTTATATG------CCCCCCTC-CT---------CTCGTGAC--AAAAT-------ATgtcttttaaatcacacacaggaacagca
gi|14 : tcaaatcggaccattaTTTACA------GATTCTTG-AAATT-TCGA-CA-TCGGTTAAGA-TTTATTAAACG-AG----CAGC-AACACGTGCT---GGTAACAGCAACAC-----
gi|12 : ATCTTG-AAATT-TCGGACA-T-CGT-AAGA-TT-ATTAAA-GAAG----CAGCAAACACGTGCT---GGTAA-A--AACAC-----A-A---AA---GTGTGT
gi|7 : agACCTGCA---GGTAA-AG-GACAC-----A-----AT---GTTTGCA--------ACACTCCC-CTTTGTTTTTCC-CG-GAGCAAAACTTCTTTAAATC--------AACACACATGGCAGTG-TAATATGTATAAAACAATGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
gi|13 : CAGTGGTGGCATGTATAAATTAACGATTATTCATTA--TTCTAAGGTCAACAAGTTGAACTTttgtgttcgatttaatcatcttattttttttacctaacagacacttagtgtccgcagcactgcaatcctatatcctatatagtaggctagaacttatgggagta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGTTTACGTATGCATGCTTCGTAATTGGACCCATTTGAAAATGTACGAATCATTTAAAGTCAAGACCATGATTGAATAATATGTAAT
Unaligned ( gi|17 ): ATTACTTTGAAATCGAAAGTACGATTGCCTAGTTCCTAGTTCG
Alignments
lowQualScore : 11 22222 2 22222222222 5555555555555 11 5555555555555555 1 1 1 333333333333333 111111 44444444444444444444 1111111111 1111111 11 444444444444444444444 11111 1111111 3333333 111 11111 444444444 2222222 1 3333333333333333 5555555555555555555555555555 1111 11 11 222222 333
lowQualScore : 6 44 99999 3 0 9999 77 1 1 55555555555 4444444444444 22 44 1 7 6 7777777777777777 22 1 0 0 0 333333333333333 0 0 4 4 33 0 0 2 4 3 5 444444 1 1 1 88888888888888888888 6666666666 3 4 0 4444444 5 11 0 5 5 0 444444444444444444444 0 0 55555 55 3333333 1 2222222 5555 77 5 000 11111 77 222222222 1 9999999 4 1 5 5 0 0 66 5 0 2 0 666 5 2 2 1 4 4 3333333333333333 9999999999999999999999999999 6 9 6666 3 1 66 0 99 444444 4 2 2 777
lowQualScore : . .. ..... . . .... .. . . ........... ............. .. .. . . . ................ .. . . . . ............... . . . . .. . . . . . . ...... . . . .................... .......... . . . ....... . .. . . . . ..................... . . ..... .. ....... . ....... .... .. . ... ..... .. ......... . ....... . . . . . . .. . . . . ... . . . . . . ................ ............................ . . .... . . .. . .. ...... . . . ...
lowQualScore : 7 77 33333 7 7 0000 33 0 0 77777777777 3333333333333 00 00 0 3 7 7777777777777777 00 0 0 0 0 000000000000000 2 9 0 0 77 9 8 6 4 7 0 777777 0 8 4 99999999999999999999 3333333333 7 4 9 4444444 3 99 2 0 0 2 111111111111111111111 1 2 66666 11 4444444 4 4444444 6666 55 4 000 11111 99 111111111 9 4444444 4 0 0 0 9 1 99 0 0 2 1 222 0 6 7 0 4 4 8888888888888888 7777777777777777777777777777 7 3 5555 8 0 00 8 00 555555 2 0 5 555
consensus : NNNTAAATCGATTTTAATATAAAG--A-GTAAA-ATCTTATGTGAAATTCATTT-CGAACTG-T-TTTTGG--TGT-T-TTCTTTGNTTTCTTATAATATTGAAA---AT--------AT-CGCAAAATACCTGTTCAAA-TGTCGTTATTTT-CAGAAACGA-ATGACTGAATN-CT-GC--CTCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAGGGGAC----G---GT---GCTT-----TA--TCTNAA-TCAGA-------ANTTTAGGAA--TTTGTT-T-ACAAGCG---------GT----------GAAACAATTTTA--TNTTNGAATTC-----TACAGCATGAATTA---AAACTTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAG--TTCACA-G---AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-TAAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAGCAAA-CTATCTTTAAANNAACACACATGG--CAGCG-TNGTATGTATAAAATAACGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
Reference ( family-454 ) : NNNTAAATCGATTTTAATATAAAG--A-GTAAATACCTCNCGTGCGANTCANTTACGANCTGNTNTTTTGGTGTGTNTNTTCTTTNNTTTCTTATNATATTGAAA---AT--------ATNCGCAANNTNCCTGTTCAAA-TATCGTTATTTT-CAGAAACGA-ATGACTGAATN-CT-GC--CCCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAGGGGAC----G---GT---GCTT-----TA--TCTCAA-TCAGA-------ANTTTAGGAA--TTTGTT-T-ACAAGCG---------GT----------GAAACAATTTTA--CGTTTGAATTC-----TACAGCATGAATTA---AAACTTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAG--TTCACG-G---AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-TAAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACAC-----ACA---GA---GTTTGTA--------ACCCCCTC-CT---------C-CGGAGCAAA-CTATCTTTAAAGAAACACACATGG--CAGCG-TGGCATGTATAAAATAACGAAGATTCGTGATCTTCT-AGGTCAACAAGTTAAACTTA
gi|1 : TAAATCGATTTTAA-ATAAAG--A-GTAAA--CCTTCCGTGCAAATCATTTACGA-CT----TTTT----TATATATT---TGGTTTCTTATTATATT-AAA---AT--------A--CGCAAACTCCCTGTTATAA-TATTGCTATTTT-CAGAACCGA-ATGACTGAATTGCT-GC--TTCTT-CTTATAACGATGTTGCTAAAATGTAGAACGGAA-AA-GGGAACAAAATCTAAAAATA-AATATCATATAA---A-------TATAAATACCAAAAATGGGGG-----------G---GT---GCTT-----TA--TTTTAA-TTAGA-------A-TTTAGTAA--TTTGTT-T-GCAAG-------------------------------------CGTTTGAATTC-----TACAGCATGAATCA---AAACTTTAA-AAC-GTAAATCAA---AT---GCTTGTACAAGAG--TTTACGTGTCTAGCGATTTAC------AAGAATCTTGAAAAAT-TC-GACATTG--G-TAAAA-TTGTTAAA-G-AGCAGC-GACACTTGCAGGCAA-AG-GACAC-----ACG---GGGGCGTGGGGG--------A------C-TT---------C-CAGAGCAAA-C-ATCTTTAAAGAAACACACATGA--CAGC---------------ATAAGGAAGGTTCGTGATCTTCT------AACAAGTTAAACTTA
gi|10 : aTGCTAAAACGTTGAATGGAA-AA-TGGAAC---------------------AT-TAATGTAGCTA---AGACAACACCAAA--TCGGGCAG---AC----A----T---GCT-----------CTCAA-TCGGGCAAATATACTCTAAGAAGATTTATT-T-ACAAGCG---------TTTTTTTTTAAAGAAGCAATTTTA--TCTCATAATTT-----GGCATCATAAATTGATTAAGCTTGCA-AAGTGTAtagtgatcgatttaatcatgtttatttacctaacagaaacttggtgtccattgcactgcaatcctaaataatagctaagacttatagcagtat
gi|12 : ATCTTG-AAATT-TCGGACATC---G-TAAGA-TTATTAAA-GAAGCAGCAAACACGTGCTGGTAA-A--AACAC-----A-A---AA---GTGTGT
gi|13 : agTGGT-CAGTGGTGGCATGTATAAATTAACGATTATTCAT--TATTCTAAGGTCAACAAGTTGAACTT
gi|14 : TTTACA-------GATTCTTG-AAATT-TC-GACATCG--GTTAAGATTTATTAAACG-AGCAGC-AACACGTGCTGGTAACAGCAACAC-----cttgtgtttgtt
gi|15 : GAACAGGA-AA-TGTAACGAAACCTAATAGTA-A--ATGAT-TGATGTAGTCT---AAAAAATATTAAAAAT
gi|16 : gatGGTGTTGCTAAAACACAGAACGGAA-AA-CGGAACGAAACCCGGA---A-AATATG
gi|18 : GGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGGAAtgtctattatgtttt
gi|2 : TATATC-ATTTTGATACAAAGCGATGTAAA-ATCTTATGTGAAATTCATTT-TGAAATGTTCGTTTAA----------CTTTGATT-CTTATAATATTGAAAGAAATCCAGGTAAATACACAAAATACTTGTTCAAA-TGTCGTTATTTC-TAGAAACGA-ATGACTGAATG-CTTGT--TTCTT-CTTATGAAGATGTTGCTAAAATGCGGAACGGAA-AA-CGGAACGAAATCTAAGAATA-AATATCAT-TAATGTAGTTT---TAAAAATGCCACAAATCGGGGAGGGGAT----G---GT---GCTT-----TA--TCTTAA-TCAGA-------AG-TTAGGAA--TTTATT-T-ACAAGCG---------TT----------GAAACAATTTTT--TATTTGAATTG-----TACAGCATGGATTA---AAATTTGAA-AAG-GTACATTAA---AT---AGTTGTATAAAAG--TTCACATGTCTAGCGATTTACAAGA--AAGAATCTTG-GAAAT-TC-GGCA-TG--G-TAAAA-TTGTTAAA-G-AGCAGC-GACACTTGCAGGCAA-AG-AACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAG-AAA-CTATC--------AACACACCTGA--CAGTA-TCGTATGTATAAAATAATGAAGATTCATGAACTTTTCAAGTCAACAAGTTAAACTTAcag
gi|3 : atgTATCCAAACTGTCGTCTTTTT-CAGAAAAAAGATGGCTGAAGT-CAAGC--C-------TAAGACGATGTTGTTTAAACGCTGAACCGAACAA-CGGAACGAA-TC-AAAAATACAATATGAT-TA-TGTAGTTC---ATAAAATAACAAAAATGGGGGGGGGG
gi|3 : cgGGGGGGGGGACTTCCG---GCTTCACTT-----TAAATTGAAA-TCAGA-------ATTTTAGGAAA-TGTGTT-T-ACA-GCGTTTTTTAAAGTTT--------GAAATTATATTAATCATTTGAATTC-----TACAGCATGAATTA---AAA-----------GTAAATC-A---AT---GCTTGTATAAGAG--TT--------------TTTACA--ATGAAGAATCTTG-AAAATCTC-GGCATTG--G-T-AAA-TTGTT-----------------CTTGCGGGCAA-AA-GACTC-----ACA---AA---GTTTGTAAAACCAACACCCCCTCTTT---------C-CGGAG-AAA-C-GTCTTTTAAATCACACACA-GGAACAGCgggggggggggggggggggggggggggggacttccggcttcactttaaattgaaatcagaattttaggaaatgtgtttacagcgttttttaaagtttgaaattatattaatcatttgaattctacagcatgaattaaaagtaaatcaatgcttgtataagagtttttacaatgaagaatcttgaaaatctcggcattggtaaattgttcttgcgggcaaaagactcacaaagtttgtaaaaccaacaccccctctttccggagaaacgtcttttaaatcacacacaggaacagca
gi|4 : cgtatccaaactgtcgtctttttcagaaaaaagatggctgaagtcaagcctaagacgatgttgtttaaacgctgaaccgaacaacggaacgaatcaaaaatacaatatgattatgtagttcataaaataacaaaaatggggggggggggggggggggggggggggggTGCTAAAACACAAAATGGAA-AA-CATA-CATATTTTAACAATA-AATATGAT-AAATATAGTTTAAATGAGAAAACCAC---TAGGTAAAAGGATTA--A---GTCT-ACTCAAGTCTA---CTCAAATTAAA-------AAATTAGGAA--TTTGTAAT-ACAAGTG---------GT----------GAAAGAATTGTA--TGTTAGAATTT----------CATGGAATA---G---TT-AA-AAG-GTAAGATAA---GT---GTTTGTATAAGAAATTTCA---G---AGCGATTTACA--A--AA--ATCTTG-AAATT-TC-A----TG--G-TAAAAATTATTAAA-G-AGCAGC-GACACCTGTAGGGAA-AG-ACTAC-----GTT---GA---G-TTGTA---------------T-TG---------C-AGGAGTAAA-ACATCCTTAAa
gi|5 : AATAGATGTTA-TATAAAG--A--TAAATATTTCAT-TAAGATTCAATT-TGAACTGATGTTTTGGTGTGTTTTTTCTTTTTTTT-TTATAAT--TGAAA---AT--------ATTTGCAATATACCTGTTCAAA-TATCGTTATTTTCCAGAAACAA-ATGACGGAATA-TT-ACCACCCTTGCTTATTGCAGTGTTTTTAAAATGCGTAACGG--------------AATCTTACAATA-ATTATGAT-TAATTTAG-TT---TAGAATTACCAAAAACCGAGGA----AA----G---GT---GCTT-----TA--TTTCAT-TC-GA-------AAT
gi|6 : T---GCTT-----T-----TTAA-TCAAA-------ATTTTAGGAG-------------AAGCG---------GT----------GAAACAATTTTA--TCTCACAATTCAAGACTCCAA-ACGGATTA------TTTGTA-CAG-TTACATGTATGTATCTAGTTTGTATACAAG--TTCTCA-A---AGCGTGTTCCA--A----GAATCTTG-TAATT-TT-AACATTGAAG-GAGGA---GTTAGC-G-AGCA---GA-------GGGGAA-AG-AACACATTTTACAAAGGG---GTTTATATG------CCCCCCTC-CT---------CTCGTGACAAA-ATATaaaaaatcta
gi|7 : tcaaatcggaccattaACCTGCAGGTAA-AG-GACAC-----A------AT--GTTTGCA--------ACACTCCC-CTTTGTTTTTCC-CGGAGCAAAACT-TCTTTAAATCAACACACATGG--CAGTG-TAATATGTATAAAACAATGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
gi|8 : T---TAAAAATACCAAACACCGGGG----GAA----A---GT---GCTT-----AA--TCGAAA-TCA-A-------AATTCAGGAA--TTTGTT-T-ACAAGCG---------GT----------GGAACAATTTTA--TATTTAAATTC-----TACAGCATGAATTA---A----TGAA-AAG-GTTAGTCAA---AT---GCTTCTATAAGAG--TTAACA-G---AGCGATTTAC------AATGATTTTG-AAAAT-TC-GATATTG--G-TAAAA-TT---------ACCAGC-GACCCATGCGGGGAA-AA-GAttgtgttcgatttaatcatcttattttttttacctaacagacacttagtgtccgcagcactgcaatcctatatcctatatagtaggctagaacttatgggagta
gi|9 : gTTGCTAAAATATGGAAGGGAA-AAATGGAACAGCATTTAAGAATC-AGAATGAT-TAATGTAG--C---TA-------CAAAAACTGGGGAAAATAT----GTTTTT---TCTT-----CA--TTTGAA-TCAAA-------AGTTTAGGAA--TTTTTT-TAACTAATA---------AT----------AAAACA-----------------TC-----TGCACCATAAATTGAT-AAAATTAAGCAA----AAATCTA---AT-------------GAG--TTTGCA-A---AGCATTTTAC------AAGAATATTG-A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGTTTACGTATGCATGCTTCGTAATTGGACCCATTTGAAAATGTACGAATCATTTAAAGTCAAGACCATGATTGAATAATATGTAAT
Unaligned ( gi|17 ): ATTACTTTGAAATCGAAAGTACGATTGCCTAGTTCCTAGTTCG
Alignments
lowQualScore : 11 22222 22 11 77777777777777777777 111 7777777777777 333 1 1 1 2222222222 1 111111 444444444444444 111111111111111 1111111 44444444444444444444444 11111 1111111 3333333 111 11111 333333333 33333333 2222222222222222 5555555555555555555555555555 1111 11 111111
lowQualScore : 6 44 99999 00 6 44 7 33333333333333333333 555 7 6 3333333333333 222 0 0 0 4444444444 2 0 0 0 4 4 33 0 0 2 4 5 444444 1 1 1 333333333333333 7777 666666666666666 0 4444444 5 5 66 0 5 5 0 77777777777777777777777 0 0 00000 44 3333333 1 2222222 5555 77 5 000 11111 111111111 1 22222222 4 1 5 5 0 0 66 5 5 5 2 0 666 5 2 2 1 4 4 9999999999999999 9999999999999999999999999999 6 9 6666 3 1 99 0 99 999999 4 2 8 0
lowQualScore : . .. ..... .. . .. . .................... ... . . ............. ... . . . .......... . . . . . . .. . . . . . ...... . . . ............... .... ............... . ....... . . .. . . . . ....................... . . ..... .. ....... . ....... .... .. . ... ..... ......... . ........ . . . . . . .. . . . . . ... . . . . . . ................ ............................ . . .... . . .. . .. ...... . . . .
lowQualScore : 7 77 33333 77 7 00 3 00000000000000000000 000 3 7 3333333333333 333 0 0 0 2222222222 5 0 2 9 0 0 77 9 8 6 4 0 777777 0 8 4 000000000000000 9999 888888888888888 9 4444444 3 0 99 2 0 0 4 22222222222222222222222 1 2 55555 11 4444444 4 4444444 6666 55 4 000 11111 333333333 9 55555555 4 0 0 0 9 1 99 0 0 0 2 1 222 0 6 7 0 4 4 8888888888888888 7777777777777777777777777777 7 3 5555 8 0 00 8 00 000000 2 5 8 8
consensus : NNNTAAATCGATTTTAATATAAAG--A-GTAAA-ATCTTATGTGAAATTCATTT-CGAACTG-T-TTTTG-CGT----TT-TCTTTGNTTTCTTATAATATTGA-------------AAATA-C-GCAAAATACCTGTTCAAA-TGTCGTTATTTT-CAGAAACGA-ATGACTGAATN-C-T-GC--CTCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAGGGGAC----G---GT---GCT--TTA--TCTN----AATCAGA-------ANTTTAGG-AA--TTTGTT-T-ACAAGCG---------G--T----------GAAACAATTTTA--TATTNGAATTC-----TACAGCATGAATTA---AAACTTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAGTTCGCA-G---AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAGCAAA-CTATCTTTAAANNAACACACATGG--CAGCG-TNGTATGTATAAAATAACGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
Reference ( family-454 ) : NNNTAAATCGATTTTAATATAAAG--A-GTAAA-ATCTTATGTGAAATTCATTT-CGAACTG-T-TTTTGGTGT----TT-TCTTTGNTTTCTTATAATATTGA-------------AAATATC-GCAAAATACCTGTTCAAA-TGTCGTTATTTT-CAGAAACGA-ATGACTGAATN-C-T-GC--CTCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAGGGGAC----G---GT---GCT--TTA--TCTN----AATCAGA-------ANTTTAGG-AA--TTTGTT-T-ACAAGCG---------G--T----------GAAACAATTTTA--TNTTNGAATTC-----TACAGCATGAATTA---AAACTTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAGTTCACA-G---AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAGCAAA-CTATCTTTAAANNAACACACATGG--CAGCG-TNGTATGTATAAAATAACGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
gi|1 : TAAATCGATTTTAA-ATAAAG--A-GTAAA--CCTTCCGTGCAAATCATTTACGA-CT--T-TTTTA--------TA-TATTTGGTTTCTTATTATATT-A-------------AAATA-C-GCAAACTCCCTGTTATAA-TATTGCTATTTT-CAGAACCGA-ATGACTGAATTGC-T-GC--TTCTT-CTTATAACGATGTTGCTAAAATGTAGAACGGAA-AA-GGGAACAAAATCTAAAAATA-AATATCATATAA---A-------TATAAATACCAAAAATGGGGG-----------G---GT---GCT--TTA--TTTT----AATTAGA-------A-TTTAGT-AA--TTTGTT-T-GCAAGCG---------------------------------------TTTGAATTC-----TACAGCATGAATCA---AAACTTTAA-AAC-GTAAATCAA---AT---GCTTGTACAAGAGTTTACGTGTCTAGCGATTTAC------AAGAATCTTGAAAAAT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACTTGCAGGCAA-AG-GACAC-----ACG---GGGGCGTGGGGG--------A------C-TT---------C-CAGAGCAAA-C-ATCTTTAAAGAAACACACATGA--CAGC---------------ATAAGGAAGGTTCGTGATCTTCT------AACAAGTTAAACTTA
gi|10 : aTGCTAAAACGTTGAATGGAA-AA-TGGAAC---------------------AT-TAATGTAGCTA---AGACAACACCAAA--TCGGGCAG---AC----A----T---GCT--------CTC----AATCGGGCAAATATACTCTAAG-AAGATTTATT-T-ACAAGCG---------T--TTTTTTTTAAAGAAGCAATTTTA--TCTCATAATTT-----GGCATCATAAATTGATTAAGCTTGCA-AAGTGTAtagtgatcgatttaatcatgtttatttacctaacagaaacttggtgtccattgcactgcaatcctaaataatagctaagacttatagcagtat
gi|12 : ATCTTG-AAATT-TCGGACATC---G-T-AAGA-TTATTAAA-GAAGCAGCAAACACGTGCTGGTAA-A--AACAC-----A-A---AA---GTGTGT
gi|13 : agTGGT-CAGTGGTGGCATGTATAAATTAACGATTATTCATTAT--TCTAAGGTCAACAAGTTGAACTT
gi|14 : TTTACA-------GATTCTTG-AAATT-TC-GACATCG--GTT-AAGATTTATTAAACG-AGCAGC-AACACGTGCTGGTAACAGCAACAC-----cttgtgtttgtt
gi|15 : GAACAGGA-AA-TGTAACGAAACCTAATAGTA-AAT--GAT-TGATGTAGTCT---AAAAAATATTAAAAAT
gi|16 : gatGGTGTTGCTAAAACACAGAACGGAA-AA-CGGAACGAAACCCGGA---A-AATATG
gi|18 : GGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGGAAtgtctattatgtttt
gi|2 : TATATC-ATTTTGATACAAAGCGATGTAAA-ATCTTATGTGAAATTCATTT-TGAAATG-T-T-----CGT----TTAACTTTGA-TTCTTATAATATTGAAAGAAATCCAGGTAAATA-C-ACAAAATACTTGTTCAAA-TGTCGTTATTTC-TAGAAACGA-ATGACTGAATG-CTT-GT--TTCTT-CTTATGAAGATGTTGCTAAAATGCGGAACGGAA-AA-CGGAACGAAATCTAAGAATA-AATATCAT-TAATGTAGTTT---TAAAAATGCCACAAATCGGGGAGGGGAT----G---GT---GCT--TTA--TCTT----AATCAGA-------AG-TTAGG-AA--TTTATT-T-ACAAGCG---------T--T----------GAAACAATTTTT--TATTTGAATTG-----TACAGCATGGATTA---AAATTTGAA-AAG-GTACATTAA---AT---AGTTGTATAAAAGTTCACATGTCTAGCGATTTACAAGA--AAGAATCTTG-GAAAT-TC-GGCA-TG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACTTGCAGGCAA-AG-AACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAG-AAA-CTATC--------AACACACCTGA--CAGTA-TCGTATGTATAAAATAATGAAGATTCATGAACTTTTCAAGTCAACAAGTTAAACTTAcag
gi|3 : atgTATCCAAACTGTCGTCTTTTT-CAGAAAAAAGATGGCTGAAGT-C-AAGC--CT-------AAGACGATGTTGTTTAAACGCTGAACCGAACAA-CGGAACGAA-TC-AAAAATACAATATGAT-TA-TGTAGTTC---ATAAAATAACAAAAATGGGGGGGGGG
gi|3 : cgGGGGGGGGGACTTCCG---GCTTCACT--TTAAATTGA----AATCAGA-------ATTTTAGGAAA--TGTGTT-T-AC-AGCGTTTTTTAAAGTTT----------GAAATTATATTAATCATTTGAATTC-----TACAGCATGAATTA---AAA-----------GTAAATC-A---AT---GCTTGTATAAGAGTT--------------TTTACA--ATGAAGAATCTTG-AAAATCTC-GGCATTG--G-T--AAA-TTGTT-----------------CTTGCGGGCAA-AA-GACTC-----ACA---AA---GTTTGTAAAACCAACACCCCCTCTTT---------C-CGGAG-AAA-C-GTCTTTTAAATCACACACA-GGAACAGCgggggggggggggggggggggggggggggacttccggcttcactttaaattgaaatcagaattttaggaaatgtgtttacagcgttttttaaagtttgaaattatattaatcatttgaattctacagcatgaattaaaagtaaatcaatgcttgtataagagtttttacaatgaagaatcttgaaaatctcggcattggtaaattgttcttgcgggcaaaagactcacaaagtttgtaaaaccaacaccccctctttccggagaaacgtcttttaaatcacacacaggaacagca
gi|4 : cgtatccaaactgtcgtctttttcagaaaaaagatggctgaagtcaagcctaagacgatgttgtttaaacgctgaaccgaacaacggaacgaatcaaaaatacaatatgattatgtagttcataaaataacaaaaatggggggggggggggggggggggggggggggTGCTAAAACACAAAATGGAA-AA-CATA-CATATTTTAACAATA-AATATGAT-AAATATAGTTTAAATGAGAAAACCAC---TAGGTAAAAGGATTA--A---GT----CTACTCAAGTCTACTCAAATTAAA-------AAATTAGG-AA--TTTGTAAT-ACAAGTG---------G--T----------GAAAGAATTGTA--TGTTAGAATTT----------CATGGAATA---G---TT-AA-AAG-GTAAGATAA---GT---GTTTGTATAAGAAATTTCA-G---AGCGATTTACA--A--A--AATCTTG-AAATT-TC-A----TG--G-TAAAAA-TTATTAAA-G-AGCAGC-GACACCTGTAGGGAA-AG-ACTAC-----GTT---GA---G-TTGTA---------------T-TG---------C-AGGAGTAAA-ACATCCTTAAa
gi|5 : AATAGATGTTA-TATAAAG--A--TAAATATTTCAT-TAAGATTCAATT-TGAACTGATGTTTTGGTGTGTTTTT-TCTTT-TTTTTTTATAAT--TGA-------------AAATATTTGCAATATACCTGTTCAAA-TATCGTTATTTTCCAGAAACAA-ATGACGGAATA-T-T-ACCACCCTTGCTTATTGCAGTGTTTTTAAAATGCGTAACGG--------------AATCTTACAATA-ATTATGAT-TAATTTAG-TT---TAGAATTACCAAAAACCGAGGA----AA----G---GT---GCT--TTA--TTTC----ATTC-GA-------AAT
gi|6 : T---GCT--TT-----TT----AATCAAA-------ATTTTAGG-AG-------------AAGCG---------G--T----------GAAACAATTTTA--TCTCACAATTCAAGACTCCAA-ACGGATTA------TTTGTA-CAG-TTACATGTATGTATCTAGTTTGTATACAAGTTCTCA-A---AGCGTGTTCCA--A----GAATCTTG-TAATT-TT-AACATTGAAG-G-AGGA---GTTAGC-G-AGCA---GA-------GGGGAA-AG-AACACATTTTACAAAGGG---GTTTATATG------CCCCCCTC-CT---------CTCGTGACAAA-ATATaaaaaatcta
gi|7 : tcaaatcggaccattaACCTGCAGGTAA-AG-GACAC-----A-----AT---GTTTGCA--------ACACTCCC-CTTTGTTTTTCC-CGGAGCAAAACT-TCTTTAAATCAACACACATGG--CAGTG-TAATATGTATAAAACAATGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
gi|8 : T---TAAAAATACCAAACACCGGGG----GAA----A---GT---GCT--TAA--TCGA----AATCA-A-------AATTCAGG-AA--TTTGTT-T-ACAAGCG---------G--T----------GGAACAATTTTA--TATTTAAATTC-----TACAGCATGAATTA---A----TGAA-AAG-GTTAGTCAA---AT---GCTTCTATAAGAGTTAACA-G---AGCGATTTAC------AATGATTTTG-AAAAT-TC-GATATTG--G-T-AAAA-TT---------ACCAGC-GACCCATGCGGGGAA-AA-GAttgtgttcgatttaatcatcttattttttttacctaacagacacttagtgtccgcagcactgcaatcctatatcctatatagtaggctagaacttatgggagta
gi|9 : gTTGCTAAAATATGGAAGGGAA-AAATGGAACAGCATTTAAGAATC-AGAATGAT-TAATGTAG--C---TA-------CAAAAACTGGGGAAAATAT----GTTTTT---TCT--TCA--TTTG----AATCAAA-------AGTTTAGG-AA--TTTTTT-TAACTAATA---------A--T----------AAAACA-----------------TC-----TGCACCATAAATTGAT-AAAATTAAGCAA----AAATCTA---AT-------------GAGTTTGCA-A---AGCATTTTAC------AAGAATATTG-A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGTTTACGTATGCATGCTTCGTAATTGGACCCATTTGAAAATGTACGAATCATTTAAAGTCAAGACCATGATTGAATAATATGTAAT
Unaligned ( gi|17 ): ATTACTTTGAAATCGAAAGTACGATTGCCTAGTTCCTAGTTCG
Alignments
lowQualScore : 11 22222 22 11 777777777777777777777 111 7777777777777 11 1 1 1 2222222222 1 111111 444444444444444 111111111111111 1111111 11 444444444444444444444 11111 1111111 3333333 111 11111 333333333 33333333 2222222222222222 5555555555555555555555555555 1111 11 111111
lowQualScore : 6 44 99999 00 6 44 7 000000000000000000000 555 7 6 3333333333333 88 0 0 0 4444444444 2 0 0 0 4 4 33 0 0 2 4 5 444444 1 1 1 333333333333333 7777 666666666666666 0 4444444 5 11 0 5 5 777777777777777777777 0 0 00000 44 3333333 1 2222222 5555 77 5 000 11111 444444444 1 22222222 4 1 5 5 0 0 66 5 5 5 2 0 666 5 2 2 1 4 4 9999999999999999 9999999999999999999999999999 6 9 6666 3 1 99 0 99 999999 4 2 8 0
lowQualScore : . .. ..... .. . .. . ..................... ... . . ............. .. . . . .......... . . . . . . .. . . . . . ...... . . . ............... .... ............... . ....... . .. . . . ..................... . . ..... .. ....... . ....... .... .. . ... ..... ......... . ........ . . . . . . .. . . . . . ... . . . . . . ................ ............................ . . .... . . .. . .. ...... . . . .
lowQualScore : 7 77 33333 77 7 00 3 777777777777777777777 000 3 7 3333333333333 33 0 0 0 2222222222 5 0 2 9 0 0 77 9 8 6 4 0 777777 0 8 4 000000000000000 9999 888888888888888 9 4444444 3 99 2 0 0 222222222222222222222 1 2 99999 11 4444444 4 4444444 6666 55 4 000 11111 999999999 9 55555555 4 0 0 0 9 1 99 0 0 0 2 1 222 0 6 7 0 4 4 8888888888888888 7777777777777777777777777777 7 3 5555 8 0 00 8 00 000000 2 5 8 8
consensus : NNNTAAATCGATTTTAATATAAAG--A-GTAAA-ATCTTATGTGAAATTCATTT-CGAACTG---TTTT--TGCGTTT-T--CTTTGNTTTCTTATAATATTGA-------------AAATAC--GCAAAATACCTGTTCAAA-TGTCGTTATTTT-CAGAAACGA-ATGACTGAATN-C-T-GC--CTCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAGGGGAC----G---GT---GCT--TTA--TCTN----AATCAGA-------ANTTTAGGAA--TTTGTT-T-ACAAGCG---------GT----------GAAACAATTTTA--TATTNGAATTC-----TACAGCATGAATTA---AAACTTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAGTTCGCA-G---AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAGCAAA-CTATCTTTAAANNAACACACATGG--CAGCG-TNGTATGTATAAAATAACGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
Reference ( family-454 ) : NNNTAAATCGATTTTAATATAAAG--A-GTAAA-ATCTTATGTGAAATTCATTT-CGAACTG---TTTT--TGCGTTT-T--CTTTGNTTTCTTATAATATTGA-------------AAATAC--GCAAAATACCTGTTCAAA-TGTCGTTATTTT-CAGAAACGA-ATGACTGAATN-C-T-GC--CTCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAGGGGAC----G---GT---GCT--TTA--TCTN----AATCAGA-------ANTTTAGGAA--TTTGTT-T-ACAAGCG---------GT----------GAAACAATTTTA--TATTNGAATTC-----TACAGCATGAATTA---AAACTTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAGTTCGCA-G---AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAGCAAA-CTATCTTTAAANNAACACACATGG--CAGCG-TNGTATGTATAAAATAACGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
gi|1 : TAAATCGATTTTAA-ATAAAG--A-GTAAA--CCTTCCGTGCAAATCATTTACGA-CT----TTTT--TA---TA-T--ATTTGGTTTCTTATTATATT-A-------------AAATAC--GCAAACTCCCTGTTATAA-TATTGCTATTTT-CAGAACCGA-ATGACTGAATTGC-T-GC--TTCTT-CTTATAACGATGTTGCTAAAATGTAGAACGGAA-AA-GGGAACAAAATCTAAAAATA-AATATCATATAA---A-------TATAAATACCAAAAATGGGGG-----------G---GT---GCT--TTA--TTTT----AATTAGA-------A-TTTAGTAA--TTTGTT-T-GCAAGCG-------------------------------------TTTGAATTC-----TACAGCATGAATCA---AAACTTTAA-AAC-GTAAATCAA---AT---GCTTGTACAAGAGTTTACGTGTCTAGCGATTTAC------AAGAATCTTGAAAAAT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACTTGCAGGCAA-AG-GACAC-----ACG---GGGGCGTGGGGG--------A------C-TT---------C-CAGAGCAAA-C-ATCTTTAAAGAAACACACATGA--CAGC---------------ATAAGGAAGGTTCGTGATCTTCT------AACAAGTTAAACTTA
gi|10 : aTGCTAAAACGTTGAATGGAA-AA-TGGAAC---------------------AT-TAATGTAGCTA---AGACAACACCAAA--TCGGGCAG---AC----A----T---GCT--------CTC----AATCGGGCAAATATACTCTAAGAAGATTTATT-T-ACAAGCG---------TTTTTTTTTAAAGAAGCAATTTTA--TCTCATAATTT-----GGCATCATAAATTGATTAAGCTTGCA-AAGTGTAtagtgatcgatttaatcatgtttatttacctaacagaaacttggtgtccattgcactgcaatcctaaataatagctaagacttatagcagtat
gi|12 : ATCTTG-AAATT-TCGGACATC---G-T-AAGA-TTATTAAA-GAAGCAGCAAACACGTGCTGGTAA-A--AACAC-----A-A---AA---GTGTGT
gi|13 : agTGGT-CAGTGGTGGCATGTATAAATTAACGATTATTCATTAT--TCTAAGGTCAACAAGTTGAACTT
gi|14 : TTTACA-------GATTCTTG-AAATT-TC-GACATCG--GTT-AAGATTTATTAAACG-AGCAGC-AACACGTGCTGGTAACAGCAACAC-----cttgtgtttgtt
gi|15 : GAACAGGA-AA-TGTAACGAAACCTAATAGTA-AAT--GAT-TGATGTAGTCT---AAAAAATATTAAAAAT
gi|16 : gatGGTGTTGCTAAAACACAGAACGGAA-AA-CGGAACGAAACCCGGA---A-AATATG
gi|18 : GGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGGAAtgtctattatgtttt
gi|2 : TATATC-ATTTTGATACAAAGCGATGTAAA-ATCTTATGTGAAATTCATTT-TGAAATG---TT------CGTTTAA--CTTTGA-TTCTTATAATATTGAAAGAAATCCAGGTAAATAC--ACAAAATACTTGTTCAAA-TGTCGTTATTTC-TAGAAACGA-ATGACTGAATG-CTT-GT--TTCTT-CTTATGAAGATGTTGCTAAAATGCGGAACGGAA-AA-CGGAACGAAATCTAAGAATA-AATATCAT-TAATGTAGTTT---TAAAAATGCCACAAATCGGGGAGGGGAT----G---GT---GCT--TTA--TCTT----AATCAGA-------AG-TTAGGAA--TTTATT-T-ACAAGCG---------TT----------GAAACAATTTTT--TATTTGAATTG-----TACAGCATGGATTA---AAATTTGAA-AAG-GTACATTAA---AT---AGTTGTATAAAAGTTCACATGTCTAGCGATTTACAAGA--AAGAATCTTG-GAAAT-TC-GGCA-TG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACTTGCAGGCAA-AG-AACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAG-AAA-CTATC--------AACACACCTGA--CAGTA-TCGTATGTATAAAATAATGAAGATTCATGAACTTTTCAAGTCAACAAGTTAAACTTAcag
gi|3 : atgTATCCAAACTGTCGTCTTTTT-CAGAAAAAAGATGGCTGAAGT-C-AAGC--CT-------AAGACGATGTTGTTTAAACGCTGAACCGAACAA-CGGAACGAA-TC-AAAAATACAATATGAT-TA-TGTAGTTC---ATAAAATAACAAAAATGGGGGGGGGG
gi|3 : cgGGGGGGGGGACTTCCG---GCTTCACT--TTAAATTGA----AATCAGA-------ATTTTAGGAAA-TGTGTT-T-ACA-GCGTTTTTTAAAGTTT--------GAAATTATATTAATCATTTGAATTC-----TACAGCATGAATTA---AAA-----------GTAAATC-A---AT---GCTTGTATAAGAGTT--------------TTTACA--ATGAAGAATCTTG-AAAATCTC-GGCATTG--G-T--AAA-TTGTT-----------------CTTGCGGGCAA-AA-GACTC-----ACA---AA---GTTTGTAAAACCAACACCCCCTCTTT---------C-CGGAG-AAA-C-GTCTTTTAAATCACACACA-GGAACAGCgggggggggggggggggggggggggggggacttccggcttcactttaaattgaaatcagaattttaggaaatgtgtttacagcgttttttaaagtttgaaattatattaatcatttgaattctacagcatgaattaaaagtaaatcaatgcttgtataagagtttttacaatgaagaatcttgaaaatctcggcattggtaaattgttcttgcgggcaaaagactcacaaagtttgtaaaaccaacaccccctctttccggagaaacgtcttttaaatcacacacaggaacagca
gi|4 : cgtatccaaactgtcgtctttttcagaaaaaagatggctgaagtcaagcctaagacgatgttgtttaaacgctgaaccgaacaacggaacgaatcaaaaatacaatatgattatgtagttcataaaataacaaaaatggggggggggggggggggggggggggggggTGCTAAAACACAAAATGGAA-AA-CATA-CATATTTTAACAATA-AATATGAT-AAATATAGTTTAAATGAGAAAACCAC---TAGGTAAAAGGATTA--A---GT----CTACTCAAGTCTACTCAAATTAAA-------AAATTAGGAA--TTTGTAAT-ACAAGTG---------GT----------GAAAGAATTGTA--TGTTAGAATTT----------CATGGAATA---G---TT-AA-AAG-GTAAGATAA---GT---GTTTGTATAAGAAATTTCA-G---AGCGATTTACA--A--A--AATCTTG-AAATT-TC-A----TG--G-TAAAAA-TTATTAAA-G-AGCAGC-GACACCTGTAGGGAA-AG-ACTAC-----GTT---GA---G-TTGTA---------------T-TG---------C-AGGAGTAAA-ACATCCTTAAa
gi|5 : AATAGATGTTA-TATAAAG--A--TAAATATTTCAT-TAAGATTCAATT-TGAACTGATGTTTTGGTGTGTTT-TTTCTTT-TTTTTTTATAAT--TGA-------------AAATATTTGCAATATACCTGTTCAAA-TATCGTTATTTTCCAGAAACAA-ATGACGGAATA-T-T-ACCACCCTTGCTTATTGCAGTGTTTTTAAAATGCGTAACGG--------------AATCTTACAATA-ATTATGAT-TAATTTAG-TT---TAGAATTACCAAAAACCGAGGA----AA----G---GT---GCT--TTA--TTTC----ATTC-GA-------AAT
gi|6 : T---GCT--TT-----TT----AATCAAA-------ATTTTAGGAG-------------AAGCG---------GT----------GAAACAATTTTA--TCTCACAATTCAAGACTCCAA-ACGGATTA------TTTGTA-CAG-TTACATGTATGTATCTAGTTTGTATACAAGTTCTCA-A---AGCGTGTTCCA--A----GAATCTTG-TAATT-TT-AACATTGAAG-G-AGGA---GTTAGC-G-AGCA---GA-------GGGGAA-AG-AACACATTTTACAAAGGG---GTTTATATG------CCCCCCTC-CT---------CTCGTGACAAA-ATATaaaaaatcta
gi|7 : tcaaatcggaccattaACCTGCAGGTAA-AG-GACAC-----A-----AT---GTTTGCA--------ACACTCCC-CTTTGTTTTTCC-CGGAGCAAAACT-TCTTTAAATCAACACACATGG--CAGTG-TAATATGTATAAAACAATGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
gi|8 : T---TAAAAATACCAAACACCGGGG----GAA----A---GT---GCT--TAA--TCGA----AATCA-A-------AATTCAGGAA--TTTGTT-T-ACAAGCG---------GT----------GGAACAATTTTA--TATTTAAATTC-----TACAGCATGAATTA---A----TGAA-AAG-GTTAGTCAA---AT---GCTTCTATAAGAGTTAACA-G---AGCGATTTAC------AATGATTTTG-AAAAT-TC-GATATTG--G-T-AAAA-TT---------ACCAGC-GACCCATGCGGGGAA-AA-GAttgtgttcgatttaatcatcttattttttttacctaacagacacttagtgtccgcagcactgcaatcctatatcctatatagtaggctagaacttatgggagta
gi|9 : gTTGCTAAAATATGGAAGGGAA-AAATGGAACAGCATTTAAGAATC-AGAATGAT-TAATGTAG--C---TA-------CAAAAACTGGGGAAAATAT----GTTTTT---TCT--TCA--TTTG----AATCAAA-------AGTTTAGGAA--TTTTTT-TAACTAATA---------AT----------AAAACA-----------------TC-----TGCACCATAAATTGAT-AAAATTAAGCAA----AAATCTA---AT-------------GAGTTTGCA-A---AGCATTTTAC------AAGAATATTG-A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGTTTACGTATGCATGCTTCGTAATTGGACCCATTTGAAAATGTACGAATCATTTAAAGTCAAGACCATGATTGAATAATATGTAAT
Unaligned ( gi|17 ): ATTACTTTGAAATCGAAAGTACGATTGCCTAGTTCCTAGTTCG
Alignments
lowQualScore : 11 22222 22 11 777777777777777777777 111 7777777777777 11 1 1 1 2222222222 1 111111 444444444444444 111111111111111 1111111 11 444444444444444444444 11111 1111111 3333333 111 11111 333333333 33333333 2222222222222222 5555555555555555555555555555 1111 11 111111
lowQualScore : 6 44 99999 00 6 44 7 000000000000000000000 555 7 6 3333333333333 88 0 0 0 4444444444 2 0 0 0 4 4 33 0 0 2 4 5 444444 1 1 1 333333333333333 7777 666666666666666 0 4444444 5 11 0 5 5 777777777777777777777 0 0 00000 44 3333333 1 2222222 5555 77 5 000 11111 444444444 1 22222222 4 1 5 5 0 0 66 5 5 5 2 0 666 5 2 2 1 4 4 9999999999999999 9999999999999999999999999999 6 9 6666 3 1 99 0 99 999999 4 2 8 0
lowQualScore : . .. ..... .. . .. . ..................... ... . . ............. .. . . . .......... . . . . . . .. . . . . . ...... . . . ............... .... ............... . ....... . .. . . . ..................... . . ..... .. ....... . ....... .... .. . ... ..... ......... . ........ . . . . . . .. . . . . . ... . . . . . . ................ ............................ . . .... . . .. . .. ...... . . . .
lowQualScore : 7 77 33333 77 7 00 3 777777777777777777777 000 3 7 3333333333333 33 0 0 0 2222222222 5 0 2 9 0 0 77 9 8 6 4 0 777777 0 8 4 000000000000000 9999 888888888888888 9 4444444 3 99 2 0 0 222222222222222222222 1 2 99999 11 4444444 4 4444444 6666 55 4 000 11111 999999999 9 55555555 4 0 0 0 9 1 99 0 0 0 2 1 222 0 6 7 0 4 4 8888888888888888 7777777777777777777777777777 7 3 5555 8 0 00 8 00 000000 2 5 8 8
consensus : NNNTAAATCGATTTTAATATAAAG--A-GTAAA-ATCTTATGTGAAATTCATTT-CGAACTG---TTTT--TGCGTTT-T--CTTTGNTTTCTTATAATATTGA-------------AAATAC--GCAAAATACCTGTTCAAA-TGTCGTTATTTT-CAGAAACGA-ATGACTGAATN-C-T-GC--CTCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAGGGGAC----G---GT---GCT--TTA--TCTN----AATCAGA-------ANTTTAGGAA--TTTGTT-T-ACAAGCG---------GT----------GAAACAATTTTA--TATTNGAATTC-----TACAGCATGAATTA---AAACTTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAGTTCGCA-G---AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAGCAAA-CTATCTTTAAANNAACACACATGG--CAGCG-TNGTATGTATAAAATAACGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
Reference ( family-454 ) : NNNTAAATCGATTTTAATATAAAG--A-GTAAA-ATCTTATGTGAAATTCATTT-CGAACTG---TTTT--TGCGTTT-T--CTTTGNTTTCTTATAATATTGA-------------AAATAC--GCAAAATACCTGTTCAAA-TGTCGTTATTTT-CAGAAACGA-ATGACTGAATN-C-T-GC--CTCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAGGGGAC----G---GT---GCT--TTA--TCTN----AATCAGA-------ANTTTAGGAA--TTTGTT-T-ACAAGCG---------GT----------GAAACAATTTTA--TATTNGAATTC-----TACAGCATGAATTA---AAACTTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAGTTCGCA-G---AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAGCAAA-CTATCTTTAAANNAACACACATGG--CAGCG-TNGTATGTATAAAATAACGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
gi|1 : TAAATCGATTTTAA-ATAAAG--A-GTAAA--CCTTCCGTGCAAATCATTTACGA-CT----TTTT--TA---TA-T--ATTTGGTTTCTTATTATATT-A-------------AAATAC--GCAAACTCCCTGTTATAA-TATTGCTATTTT-CAGAACCGA-ATGACTGAATTGC-T-GC--TTCTT-CTTATAACGATGTTGCTAAAATGTAGAACGGAA-AA-GGGAACAAAATCTAAAAATA-AATATCATATAA---A-------TATAAATACCAAAAATGGGGG-----------G---GT---GCT--TTA--TTTT----AATTAGA-------A-TTTAGTAA--TTTGTT-T-GCAAGCG-------------------------------------TTTGAATTC-----TACAGCATGAATCA---AAACTTTAA-AAC-GTAAATCAA---AT---GCTTGTACAAGAGTTTACGTGTCTAGCGATTTAC------AAGAATCTTGAAAAAT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACTTGCAGGCAA-AG-GACAC-----ACG---GGGGCGTGGGGG--------A------C-TT---------C-CAGAGCAAA-C-ATCTTTAAAGAAACACACATGA--CAGC---------------ATAAGGAAGGTTCGTGATCTTCT------AACAAGTTAAACTTA
gi|10 : aTGCTAAAACGTTGAATGGAA-AA-TGGAAC---------------------AT-TAATGTAGCTA---AGACAACACCAAA--TCGGGCAG---AC----A----T---GCT--------CTC----AATCGGGCAAATATACTCTAAGAAGATTTATT-T-ACAAGCG---------TTTTTTTTTAAAGAAGCAATTTTA--TCTCATAATTT-----GGCATCATAAATTGATTAAGCTTGCA-AAGTGTAtagtgatcgatttaatcatgtttatttacctaacagaaacttggtgtccattgcactgcaatcctaaataatagctaagacttatagcagtat
gi|12 : ATCTTG-AAATT-TCGGACATC---G-T-AAGA-TTATTAAA-GAAGCAGCAAACACGTGCTGGTAA-A--AACAC-----A-A---AA---GTGTGT
gi|13 : agTGGT-CAGTGGTGGCATGTATAAATTAACGATTATTCATTAT--TCTAAGGTCAACAAGTTGAACTT
gi|14 : TTTACA-------GATTCTTG-AAATT-TC-GACATCG--GTT-AAGATTTATTAAACG-AGCAGC-AACACGTGCTGGTAACAGCAACAC-----cttgtgtttgtt
gi|15 : GAACAGGA-AA-TGTAACGAAACCTAATAGTA-AAT--GAT-TGATGTAGTCT---AAAAAATATTAAAAAT
gi|16 : gatGGTGTTGCTAAAACACAGAACGGAA-AA-CGGAACGAAACCCGGA---A-AATATG
gi|18 : GGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGGAAtgtctattatgtttt
gi|2 : TATATC-ATTTTGATACAAAGCGATGTAAA-ATCTTATGTGAAATTCATTT-TGAAATG---TT------CGTTTAA--CTTTGA-TTCTTATAATATTGAAAGAAATCCAGGTAAATAC--ACAAAATACTTGTTCAAA-TGTCGTTATTTC-TAGAAACGA-ATGACTGAATG-CTT-GT--TTCTT-CTTATGAAGATGTTGCTAAAATGCGGAACGGAA-AA-CGGAACGAAATCTAAGAATA-AATATCAT-TAATGTAGTTT---TAAAAATGCCACAAATCGGGGAGGGGAT----G---GT---GCT--TTA--TCTT----AATCAGA-------AG-TTAGGAA--TTTATT-T-ACAAGCG---------TT----------GAAACAATTTTT--TATTTGAATTG-----TACAGCATGGATTA---AAATTTGAA-AAG-GTACATTAA---AT---AGTTGTATAAAAGTTCACATGTCTAGCGATTTACAAGA--AAGAATCTTG-GAAAT-TC-GGCA-TG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACTTGCAGGCAA-AG-AACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAG-AAA-CTATC--------AACACACCTGA--CAGTA-TCGTATGTATAAAATAATGAAGATTCATGAACTTTTCAAGTCAACAAGTTAAACTTAcag
gi|3 : atgTATCCAAACTGTCGTCTTTTT-CAGAAAAAAGATGGCTGAAGT-C-AAGC--CT-------AAGACGATGTTGTTTAAACGCTGAACCGAACAA-CGGAACGAA-TC-AAAAATACAATATGAT-TA-TGTAGTTC---ATAAAATAACAAAAATGGGGGGGGGG
gi|3 : cgGGGGGGGGGACTTCCG---GCTTCACT--TTAAATTGA----AATCAGA-------ATTTTAGGAAA-TGTGTT-T-ACA-GCGTTTTTTAAAGTTT--------GAAATTATATTAATCATTTGAATTC-----TACAGCATGAATTA---AAA-----------GTAAATC-A---AT---GCTTGTATAAGAGTT--------------TTTACA--ATGAAGAATCTTG-AAAATCTC-GGCATTG--G-T--AAA-TTGTT-----------------CTTGCGGGCAA-AA-GACTC-----ACA---AA---GTTTGTAAAACCAACACCCCCTCTTT---------C-CGGAG-AAA-C-GTCTTTTAAATCACACACA-GGAACAGCgggggggggggggggggggggggggggggacttccggcttcactttaaattgaaatcagaattttaggaaatgtgtttacagcgttttttaaagtttgaaattatattaatcatttgaattctacagcatgaattaaaagtaaatcaatgcttgtataagagtttttacaatgaagaatcttgaaaatctcggcattggtaaattgttcttgcgggcaaaagactcacaaagtttgtaaaaccaacaccccctctttccggagaaacgtcttttaaatcacacacaggaacagca
gi|4 : cgtatccaaactgtcgtctttttcagaaaaaagatggctgaagtcaagcctaagacgatgttgtttaaacgctgaaccgaacaacggaacgaatcaaaaatacaatatgattatgtagttcataaaataacaaaaatggggggggggggggggggggggggggggggTGCTAAAACACAAAATGGAA-AA-CATA-CATATTTTAACAATA-AATATGAT-AAATATAGTTTAAATGAGAAAACCAC---TAGGTAAAAGGATTA--A---GT----CTACTCAAGTCTACTCAAATTAAA-------AAATTAGGAA--TTTGTAAT-ACAAGTG---------GT----------GAAAGAATTGTA--TGTTAGAATTT----------CATGGAATA---G---TT-AA-AAG-GTAAGATAA---GT---GTTTGTATAAGAAATTTCA-G---AGCGATTTACA--A--A--AATCTTG-AAATT-TC-A----TG--G-TAAAAA-TTATTAAA-G-AGCAGC-GACACCTGTAGGGAA-AG-ACTAC-----GTT---GA---G-TTGTA---------------T-TG---------C-AGGAGTAAA-ACATCCTTAAa
gi|5 : AATAGATGTTA-TATAAAG--A--TAAATATTTCAT-TAAGATTCAATT-TGAACTGATGTTTTGGTGTGTTT-TTTCTTT-TTTTTTTATAAT--TGA-------------AAATATTTGCAATATACCTGTTCAAA-TATCGTTATTTTCCAGAAACAA-ATGACGGAATA-T-T-ACCACCCTTGCTTATTGCAGTGTTTTTAAAATGCGTAACGG--------------AATCTTACAATA-ATTATGAT-TAATTTAG-TT---TAGAATTACCAAAAACCGAGGA----AA----G---GT---GCT--TTA--TTTC----ATTC-GA-------AAT
gi|6 : T---GCT--TT-----TT----AATCAAA-------ATTTTAGGAG-------------AAGCG---------GT----------GAAACAATTTTA--TCTCACAATTCAAGACTCCAA-ACGGATTA------TTTGTA-CAG-TTACATGTATGTATCTAGTTTGTATACAAGTTCTCA-A---AGCGTGTTCCA--A----GAATCTTG-TAATT-TT-AACATTGAAG-G-AGGA---GTTAGC-G-AGCA---GA-------GGGGAA-AG-AACACATTTTACAAAGGG---GTTTATATG------CCCCCCTC-CT---------CTCGTGACAAA-ATATaaaaaatcta
gi|7 : tcaaatcggaccattaACCTGCAGGTAA-AG-GACAC-----A-----AT---GTTTGCA--------ACACTCCC-CTTTGTTTTTCC-CGGAGCAAAACT-TCTTTAAATCAACACACATGG--CAGTG-TAATATGTATAAAACAATGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
gi|8 : T---TAAAAATACCAAACACCGGGG----GAA----A---GT---GCT--TAA--TCGA----AATCA-A-------AATTCAGGAA--TTTGTT-T-ACAAGCG---------GT----------GGAACAATTTTA--TATTTAAATTC-----TACAGCATGAATTA---A----TGAA-AAG-GTTAGTCAA---AT---GCTTCTATAAGAGTTAACA-G---AGCGATTTAC------AATGATTTTG-AAAAT-TC-GATATTG--G-T-AAAA-TT---------ACCAGC-GACCCATGCGGGGAA-AA-GAttgtgttcgatttaatcatcttattttttttacctaacagacacttagtgtccgcagcactgcaatcctatatcctatatagtaggctagaacttatgggagta
gi|9 : gTTGCTAAAATATGGAAGGGAA-AAATGGAACAGCATTTAAGAATC-AGAATGAT-TAATGTAG--C---TA-------CAAAAACTGGGGAAAATAT----GTTTTT---TCT--TCA--TTTG----AATCAAA-------AGTTTAGGAA--TTTTTT-TAACTAATA---------AT----------AAAACA-----------------TC-----TGCACCATAAATTGAT-AAAATTAAGCAA----AAATCTA---AT-------------GAGTTTGCA-A---AGCATTTTAC------AAGAATATTG-A
blockSeqs : G AT CGATG TA G T A GATGTTTTGGTGTGTTTTTT GA A G AAGAAATCCAGGT TT C C G ATTACCA C G C A GA T C . TTTAAA A A C GGGGGACTTCCG TTCA ACTCAAGTCTACTCA CAAATAT C GA A A TTTTTTAAAGTTT AATCA AT AAGACTC T ATTAAGC AAGC GT A TGT CTAGT CACATGTCT A AAGAAA . T C G AA T A T A GA A G T T C C ATTTTACAAAGGG AAACCAACACCCCCTCTTT T T CTA T T AT AA GGTGGC C C A
blockSeqs : . T A A . T A GTTCGTTTAA TT . G . . . . . GCTTGT C . . . GA A . . CTA A A C AAAATATGTTT G TTAAATTGA . G A . . TTTTTTTTTAAA ATC TG GG G ATAAAA GCA G A . AG TTCAG A AATGAA . T . . . . . . A CG . G T T . . ACAGG ACACTCCCCTTTGTTTTTC . C ACA C A TC T ATCGT T C C
blockSeqs : . . . TCAAGC . . . . GG G . . TCT A A G AAAGGATTAA G TTATCTT . T . . . TT TTA TG TA G AAAT GAA G T . GC CTCAA T AAA . A . . . . . . G G . T A C . . ACAAA TGCCCCCCTCCT . C ATA T A . . GTAAT T . C
blockSeqs : . . GA A . . TTT A A A AGGGGATG G TTATTTC . A . . . GT ATG AG TA A AAA GTA G A . GT AACAG A AA . A . . . . . . G G . T G C . . GTTGA ACCCCCTCCT . . ACT . . .
blockSeqs : . . GA C . . TTC A C C AGACA G TAATCGA . A . . . GT ATC AC TA G G GAA G T . GC TGCAA T AA . T . . . . . . A G . C A G . . AAAA TTG . . CG
blockSeqs : . . AT C . . TT G A C AAAG G TCATTTG . T . . . GT ATA TA TG C T AA . . . . . . AA . T . . . . . . G . . C G G . . AAT
blockSeqs : . . AG G . . C A . T GAAA T TTTT . A . . . AT . . . . A . . A . A . . . . . . . . . A A T . .
blockSeqs : . . . . . . . . CTC . G . . G G . .
blockSeqs : . . .
blockSeqCons : TTT*** AAAGGACG******* GT******************* ATN** AAA**** TNCAG**** ACAAA*********** ACCCCCTCCT****************** ACA*
originalCons : NNNTAAATCGATTTTAATATAAAG--A-GTAAA-ATCTTATGTGAAATTCATTT-CGAACTG---TTTT--TGCGTTT-T--CTTTGNTTTCTTATAATATTGA-------------AAATAC--GCAAAATACCTGTTCAAA-TGTCGTTATTTT-CAGAAACGA-ATGACTGAATN-C-T-GC--CTCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAGGGGAC----G---GT---GCT--TTA--TCTN----AATCAGA-------ANTTTAGGAA--TTTGTT-T-ACAAGCG---------GT----------GAAACAATTTTA--TATTNGAATTC-----TACAGCATGAATTA---AAACTTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAGTTCGCA-G---AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACAC-----ACA---GG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAGCAAA-CTATCTTTAAANNAACACACATGG--CAGCG-TNGTATGTATAAAATAACGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
finalCons : NNNTAAATCGATTTTAATATAAAG--A-GTAAA-ATCTTATGTGAAATTCATTT-CGAACTG---TTTT--TGCGTTT-T--CTTTGNTTTCTTATAATATTGA-------------AAATAC--GCAAAATACCTGTTCAAA-TGTCGTTATTTT-CAGAAACGA-ATGACTGAATN-C-T-GC--CTCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAAAGGACG-------GT---GCT--TTA--TCTN----AATCAGA-------ANTTTAGGAA--TTTGTT-T-ACAAGCGGT-------------------GAAACAATTTTATN--TTNGAATTC-----TACAGCATGAATTAAAA----TTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAGTTTNCAG----AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACACACAAA-----------GTTTGTAACCCCCTCCT------------------C-CGGAGCAAAACA-TCTTTAAANNAACACACATGG--CAGCG-TNGTATGTATAAAATAACGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGTTTACGTATGCATGCTTCGTAATTGGACCCATTTGAAAATGTACGAATCATTTAAAGTCAAGACCATGATTGAATAATATGTAAT
Unaligned ( gi|17 ): ATTACTTTGAAATCGAAAGTACGATTGCCTAGTTCCTAGTTCG
Alignments
lowQualScore : 11 22222 22 11 777777777777777777777 111 7777777777777 11 1 1 1 2222222222 1 11111 33333333333 111111111111111 1111111 11 444444444444444444444 11111 1111111 2222222222222 111 11111 22222 33333333 2222222222222 5555555555555555555555555555 11 11 111111
lowQualScore : 6 44 99999 00 6 44 7 000000000000000000000 555 7 6 3333333333333 88 0 0 0 4444444444 2 0 0 0 4 4 33 0 0 2 4 5 3 33333 1 1 44444444444 777 666666666666666 0 4444444 5 11 0 5 5 777777777777777777777 0 0 00000 44 3333333 1 5 6666666666666 5555 77 5 000 11111 99 99999 1 22222222 4 1 5 5 0 0 66 5 5 5 2 0 666 5 2 2 1 4 4 8888888888888 9999999999999999999999999999 6 66 6 3 1 99 0 99 999999 4 2 8 0
lowQualScore : . .. ..... .. . .. . ..................... ... . . ............. .. . . . .......... . . . . . . .. . . . . . . ..... . . ........... ... ............... . ....... . .. . . . ..................... . . ..... .. ....... . . ............. .... .. . ... ..... .. ..... . ........ . . . . . . .. . . . . . ... . . . . . . ............. ............................ . .. . . . .. . .. ...... . . . .
lowQualScore : 7 77 33333 77 7 00 3 777777777777777777777 000 3 7 3333333333333 33 0 0 0 2222222222 5 0 2 9 0 0 77 9 8 6 4 0 9 88888 8 4 11111111111 888 888888888888888 9 4444444 3 99 2 0 0 222222222222222222222 1 2 55555 11 4444444 4 0 9999999999999 6666 55 4 000 11111 00 66666 9 55555555 4 0 0 0 9 1 99 0 0 0 2 1 222 0 6 7 0 4 4 9999999999999 7777777777777777777777777777 7 55 7 8 0 00 8 00 000000 2 5 8 8
consensus : NNNTAAATCGATTTTAATATAAAG--A-GTAAA-ATCTTATGTGAAATTCATTT-CGAACTG---TTTT--TGCGTTT-T--CTTTGNTTTCTTATAATATTGA-------------AAATAC--GCAAAATACCTGTTCAAA-TGTCGTTATTTT-CAGAAACGA-ATGACTGAATN-C-T-GC--CTCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAAAGGAT--GGTG---CT--TTA--TCTN----AATCAGA-------ANTTTAGGAA--TTTGTT-T-ACAAGCG---------GT----------GAAACAATTTTA--TATTNGAATTC-----TACAGCATG-AAT---TAA--AA--TTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAGTTCGCA-G---AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACAC-----ACAGA---GTTTGTA--------ACCCCCTC-CT---------C-CGGAGCAAAAC-ATCTTTAAANNAACACACATGG--CAGCG-TNGTATGTATAAAATAACGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
Reference ( family-454 ) : NNNTAAATCGATTTTAATATAAAG--A-GTAAA-ATCTTATGTGAAATTCATTT-CGAACTG---TTTT--TGCGTTT-T--CTTTGNTTTCTTATAATATTGA-------------AAATAC--GCAAAATACCTGTTCAAA-TGTCGTTATTTT-CAGAAACGA-ATGACTGAATN-C-T-GC--CTCTT-CTTATGACGGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGAAATCTAANAATA-AATATGAT-TAATGTAGTTT---TAAAAATACCAAAAATCGGGGAAAGGAC--GGTG---CT--TTA--TCTN----AATCAGA-------ANTTTAGGAA--TTTGTT-T-ACAAGCG---------GT----------GAAACAATTTTA--TNTTNGAATTC-----TACAGCATG-AAT---TAA--AA--TTGAA-AAG-GTAAATCAA---AT---GCTTGTATAAGAGTTTNCA-G---AGCGATTTACA--A--AAGAATCTTG-AAANT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACNTGCGGGNAA-AG-GACAC-----ACAAA---GTTTGTA--------ACCCCCTC-CT---------C-CGGAGCAAAAC-ATCTTTAAANNAACACACATGG--CAGCG-TNGTATGTATAAAATAACGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
gi|1 : TAAATCGATTTTAA-ATAAAG--A-GTAAA--CCTTCCGTGCAAATCATTTACGA-CT----TTTT--TA---TA-T--ATTTGGTTTCTTATTATATT-A-------------AAATAC--GCAAACTCCCTGTTATAA-TATTGCTATTTT-CAGAACCGA-ATGACTGAATTGC-T-GC--TTCTT-CTTATAACGATGTTGCTAAAATGTAGAACGGAA-AA-GGGAACAAAATCTAAAAATA-AATATCATATAA---A-------TATAAATACCAAAAATGGGGG---------GGTG---CT--TTA--TTTT----AATTAGA-------A-TTTAGTAA--TTTGTT-T-GCAAGCG-------------------------------------TTTGAATTC-----TACAGCATG-AAT---CAA--AAC-TTTAA-AAC-GTAAATCAA---AT---GCTTGTACAAGAGTTTACGTGTCTAGCGATTTAC------AAGAATCTTGAAAAAT-TC-GACATTG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACTTGCAGGCAA-AG-GACAC-----ACGGGGGCGTGGGGG--------A------C-TT---------C-CAGAGC-AAAC-ATCTTTAAAGAAACACACATGA--CAGC---------------ATAAGGAAGGTTCGTGATCTTCT------AACAAGTTAAACTTA
gi|10 : aTGCTAAAACGTTGAATGGAA-AA-TGGAAC---------------------AT-TAATGTAGCTA---AGACAACACCAAA--TCGGGCA---GAC--A-TG---CT--------CTC----AATCGGGCAAATATACTCTAAGAAGATTTATT-T-ACAAGCG---------TTTTTTTTTAAAGAAGCAATTTTA--TCTCATAATTT-----GGCATCATA-AAT---TGATTAAGCTTGCA-AAGTGTAtagtgatcgatttaatcatgtttatttacctaacagaaacttggtgtccattgcactgcaatcctaaataatagctaagacttatagcagtat
gi|12 : ATCTTG-AAATT-TCGGACATC---G-T-AAGA-TTATTAAA-GAAGCAGCAAACACGTGCTGGTAA-A--AACAC-----A-AAA---GTGTGT
gi|13 : agTGGT-CAGTGGTGGCATGTATAAATTAACGATTATTCATTAT--TCTAAGGTCAACAAGTTGAACTT
gi|14 : TTTACA-------GATTCTTG-AAATT-TC-GACATCG--GTT-AAGATTTATTAAACG-AGCAGC-AACACGTGCTGGTAACAGCAACAC-----cttgtgtttgtt
gi|15 : GAACAGGA-AA-TGTAACGAAACCTAATAGTA-AAT--GAT-TGATGTAGTCT---AAAAAATATTAAAAAT
gi|16 : gatGGTGTTGCTAAAACACAGAACGGAA-AA-CGGAACGAAACCCGGA---A-AATATG
gi|18 : GGTGTTGCTAAAACGCGGAACGGAA-AA-CGGAACGGAAtgtctattatgtttt
gi|2 : TATATC-ATTTTGATACAAAGCGATGTAAA-ATCTTATGTGAAATTCATTT-TGAAATG---TT------CGTTTAA--CTTTGA-TTCTTATAATATTGAAAGAAATCCAGGTAAATAC--ACAAAATACTTGTTCAAA-TGTCGTTATTTC-TAGAAACGA-ATGACTGAATG-CTT-GT--TTCTT-CTTATGAAGATGTTGCTAAAATGCGGAACGGAA-AA-CGGAACGAAATCTAAGAATA-AATATCAT-TAATGTAGTTT---TAAAAATGCCACAAATCGGGGAGGGGAT--GGTG---CT--TTA--TCTT----AATCAGA-------AG-TTAGGAA--TTTATT-T-ACAAGCG---------TT----------GAAACAATTTTT--TATTTGAATTG-----TACAGCATG-GAT---TAA--AAT-TTGAA-AAG-GTACATTAA---AT---AGTTGTATAAAAGTTCACATGTCTAGCGATTTACAAGA--AAGAATCTTG-GAAAT-TC-GGCA-TG--G-T-AAAA-TTGTTAAA-G-AGCAGC-GACACTTGCAGGCAA-AG-AACAC-----ACAGG---GTTTGTA--------ACCCCCTC-CT---------C-CGGAG--AAACTATC--------AACACACCTGA--CAGTA-TCGTATGTATAAAATAATGAAGATTCATGAACTTTTCAAGTCAACAAGTTAAACTTAcag
gi|3 : atgTATCCAAACTGTCGTCTTTTT-CAGAAAAAAGATGGCTGAAGT-C-AAGC--CT-------AAGACGATGTTGTTTAAACGCTGAACCGAACAA-CGGAACGAA-TC-AAAAATACAATATGAT-T-ATGTAGTTC---ATAAAATAACAAAAATGGGGGGGGGG
gi|3 : cg---CT--TTAAATTGA----AATCAGA-------ATTTTAGGAAA-TGTGTT-T-ACA-GCGTTTTTTAAAGTTT--------GAAATTATATTAATCATTTGAATTC-----TACAGCATG-AAT---TAA--AA------------GTAAATC-A---AT---GCTTGTATAAGAGTT--------------TTTACA--ATGAAGAATCTTG-AAAATCTC-GGCATTG--G-T--AAA-TTGTT-----------------CTTGCGGGCAA-AA-GACTC-----ACAAA---GTTTGTAAAACCAACACCCCCTCTTT---------C-CGGAG--AAAC-GTCTTTTAAATCACACACA-GGAACAGCgggggggggggggggggggggggggggggacttccggcttcactttaaattgaaatcagaattttaggaaatgtgtttacagcgttttttaaagtttgaaattatattaatcatttgaattctacagcatgaattaaaagtaaatcaatgcttgtataagagtttttacaatgaagaatcttgaaaatctcggcattggtaaattgttcttgcgggcaaaagactcacaaagtttgtaaaaccaacaccccctctttccggagaaacgtcttttaaatcacacacaggaacagca
gi|4 : cgtatccaaactgtcgtctttttcagaaaaaagatggctgaagtcaagcctaagacgatgttgtttaaacgctgaaccgaacaacggaacgaatcaaaaatacaatatgattatgtagttcataaaataacaaaaatgggggggggggggggggggggggggggggggggggggggacttccggcttcaTGCTAAAACACAAAATGGAA-AA-CATA-CATATTTTAACAATA-AATATGAT-AAATATAGTTTAAATGAGAAAACCAC---TAGGTAAAAGGATTAAGT----CTACTCAAGTCTACTCAAATTAAA-------AAATTAGGAA--TTTGTAAT-ACAAGTG---------GT----------GAAAGAATTGTA--TGTTAGAATTT----------CATGGAAT--------AG--TT-AA-AAG-GTAAGATAA---GT---GTTTGTATAAGAAATTTCA-G---AGCGATTTACA--A--A--AATCTTG-AAATT-TC-A----TG--G-TAAAAA-TTATTAAA-G-AGCAGC-GACACCTGTAGGGAA-AG-ACTAC-----GTTGA---G-TTGTA---------------T-TG---------C-AGGAGTAAAAC-ATCCTTAAa
gi|5 : AATAGATGTTA-TATAAAG--A--TAAATATTTCAT-TAAGATTCAATT-TGAACTGATGTTTTGGTGTGTTT-TTTCTTT-TTTTTTTATAAT--TGA-------------AAATATTTGCAATATACCTGTTCAAA-TATCGTTATTTTCCAGAAACAA-ATGACGGAATA-T-T-ACCACCCTTGCTTATTGCAGTGTTTTTAAAATGCGTAACGG--------------AATCTTACAATA-ATTATGAT-TAATTTAG-TT---TAGAATTACCAAAAACCGAGGAAA------GGTG---CT--TTA--TTTC----ATTC-GA-------AAT
gi|6 : TG---CT--TT-----TT----AATCAAA-------ATTTTAGGAG-------------AAGCG---------GT----------GAAACAATTTTA--TCTCACAATTCAAGACTCCAA-ACG-GAT---TAT------TTGTA-CAG-TTACATGTATGTATCTAGTTTGTATACAAGTTCTCA-A---AGCGTGTTCCA--A----GAATCTTG-TAATT-TT-AACATTGAAG-G-AGGA---GTTAGC-G-AGCA---GA-------GGGGAA-AG-AACACATTTTACAAAGGGGTTTATATG------CCCCCCTC-CT---------CTCGTGACAAAAT-ATaaaaaatcta
gi|7 : tcaaatcggaccattaACCTGCAGGTAA-AG-GACAC-----A--AT---GTTTGCA--------ACACTCCC-CTTTGTTTTTCC-CGGAGCAAAAC-TTCTTTAAATCAACACACATGG--CAGTG-TAATATGTATAAAACAATGAAGATTCATGATCTTCTCAAGTCAACAAGTTAAACTTA
gi|8 : T---TAAAAATACCAAACACCGGGGGAAAG------TG---CT--TAA--TCGA----AATCA-A-------AATTCAGGAA--TTTGTT-T-ACAAGCG---------GT----------GGAACAATTTTA--TATTTAAATTC-----TACAGCATG-AAT---TAA-------TGAA-AAG-GTTAGTCAA---AT---GCTTCTATAAGAGTTAACA-G---AGCGATTTAC------AATGATTTTG-AAAAT-TC-GATATTG--G-T-AAAA-TT---------ACCAGC-GACCCATGCGGGGAA-AA-GAttgtgttcgatttaatcatcttattttttttacctaacagacacttagtgtccgcagcactgcaatcctatatcctatatagtaggctagaacttatgggagta
gi|9 : gTTGCTAAAATATGGAAGGGAA-AAATGGAACAGCATTTAAGAATC-AGAATGAT-TAATGTAGCT-----------AC-AAAAACTGGGGAAAATAT--GTTTTTTCT--TCA--TTTG----AATCAAA-------AGTTTAGGAA--TTTTTT-TAACTAATA---------AT----------AAAACA-----------------TC-----TGCACCATA-AATTGATAA--AA--TTAAGCAA----AAATCTA---AT-------------GAGTTTGCA-A---AGCATTTTAC------AAGAATATTG-A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGTTTACGTATGCATGCTTCGTAATTGGACCCATTTGAAAATGTACGAATCATTTAAAGTCAAGACCATGATTGAATAATATGTAAT
Unaligned ( gi|17 ): ATTACTTTGAAATCGAAAGTACGATTGCCTAGTTCCTAGTTCG