lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222 1111111 1111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111 11111111111111111111 1111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111 1111111111111111111111111111111111111111111111 1111111111111111111111111111111111111
lowQualScore : 2 22 2 2222 0000000000000000000000000000000000000000000000000000000000000000000 1 1 2 22 1 2 1 6666 4 0000000 44 666666 22 1 2 22 555555555555 1 22 11 333333 0000000000 2 1 33 2 1 33 2 22 1 4444 11 1 4 5555555555555 1 444 2 2 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 2 1 333 5555555555555555555555555555 1 1 1 55 11111111111111111111 2 3333 4444 2 33 4 4 4444 33 555 1 1 66666 333333 222 1 1 1 3333333333333333333333333333333333333333333333333333 1 1 1 111 222 11 1 1 22222 44444444444 1 1 2 2222222222222222222222222222222222222 111 111 1 2222222222 11 1 555555555 3 2 3333 0000000000000000000000000000000000000000000000 111 222 22 22 1 22 11 2222222222 2 33 2222 222 1 1 2222222 11 111 1 1111111111111111111111111111111111111 1 555555 1 1 1 333 111111 555555555555555555 2 1 1 4 4 55 1 4 11 1 2 1 444 5555555555
lowQualScore : 0 33 0 0000 3333333333333333333333333333333333333333333333333333333333333333333 5 5 0 77 5 0 5 6 2222 0 6666666 66 777777 33 5 0 4 22 3 3 333333333333 5 66 88 999999 3333333333 0 5 11 0 5 4 11 2 0 77 5 6666 88 5 2 0 1111111111111 5 555 3 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 3 8 6 7 7 333 7 0000000000000000000000000000 3 3 3 55 6 2 66666666666666666666 0 7777 2222 0 22 0 0 4 1111 55 888 5 5 77777 888888 333 3 3 6 3 2222222222222222222222222222222222222222222222222222 6 3 6 3 3 6 666 333 7 33 0 0 2 3 55555 3 3 55555555555 0 0 0 3333333333333333333333333333333333333 777 777 0 1111111111 2 3 33 0 111111111 99 1 0 6 6 99 0000 3333333333333333333333333333333333333333333333 7 111 000 22 22 0 8 0 88 66 88 5555555555 5 0 0 99 0 0 66 0 8 8 1111 6 111 0 3 4444444 88 666 0 3333333333333333333333333333333333333 3 000000 3 3 3 777 555555 999999999999999999 99 0 5 0 0 6 0 55 6 5 0 88 5 6 0 5 888 1111111111
lowQualScore : . .. . .... ................................................................... . . . .. . . . . .... . ....... .. ...... .. . . . .. . . ............ . .. .. ...... .......... . . .. . . . .. . . .. . .... .. . . . ............. . ... . . ........................................................................................................ . . . . . . ... . ............................ . . . .. . . .................... . .... .... . .. . . . .... .. ... . . ..... ...... ... . . . . .................................................... . . . . . . ... ... . .. . . . . ..... . . ........... . . . ..................................... ... ... . .......... . . .. . ......... .. . . . . .. .... .............................................. . ... ... .. .. . . . .. .. .. .......... . . . .. . . .. . . . .... . ... . . ....... .. ... . ..................................... . ...... . . . ... ...... .................. .. . . . . . . .. . . . .. . . . . ... ..........
lowQualScore : 0 00 0 0000 0000000000000000000000000000000000000000000000000000000000000000000 0 5 0 55 5 0 5 0 0000 0 0000000 00 000000 00 5 0 0 55 0 0 555555555555 0 00 55 000000 0000000000 0 5 00 0 0 0 00 5 0 55 5 0000 00 0 5 0 5555555555555 0 555 0 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 3 7 0 3 3 333 3 0000000000000000000000000000 3 3 3 00 0 5 55555555555555555555 0 5555 5555 0 55 0 0 0 0000 55 000 5 5 55555 333333 333 3 3 0 3 7777777777777777777777777777777777777777777777777777 7 3 7 3 3 7 777 333 3 22 0 0 5 2 00000 2 2 00000000000 0 0 0 0000000000000000000000000000000000000 555 555 0 0000000000 5 0 88 0 777777777 22 8 0 7 7 22 0000 7777777777777777777777777777777777777777777777 3 777 888 55 77 8 0 0 00 22 00 2222222222 0 8 8 00 4 8 66 8 0 0 4444 0 888 0 3 3333333 33 777 5 8888888888888888888888888888888888888 3 777777 3 3 3 333 777777 555555555555555555 00 0 5 5 0 0 0 00 0 0 0 55 5 0 0 5 000 5555555555
consensus : CACGTGAACCCGGTTCAGTTATGGCGGTNGTGGCAATAAATTGTGCTCCAGATTGTCCTAGATTGGNTACNTTCTGAGGAGTA-TTAAAGCTGTAAAATTGGCATGTTAAAAGTGGTAAATACCCTTTACTCTGAACGATATA-GACAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAC-TGACGAAA--TG---TATGTTCCATATACTTAA-TTG--TATTTAATGCACTTCTAAACATGTTTCTGAAAAGGTNAAATAAGNGANCNTGANTGNCGACTCATTTGACATGTTCCCTCTTCTTTGAAAACCTNNCTGACATGTATAAACTACT-ATT--AACTATTAATCGGTTTAATATACATACAAACTCAGGACTTTNATTGCNATTTTCACCTGTTCCGCTGTGCAGTGTTTTGCGANACTTTAAAAGTTTCCTGNCAG-TCATTTTGACCTGGCNAGGTTCTCCACTTT-TGTAGATCATTTTTCAAAATTTGTTAAG----GTCCGAGTCATTCAACAAGGCAATCGTTCCTA---TATGCCATTTCTGATGTGTTGCGTTTTCGGGATGTTNTTTGTNTGTCATNTATACAAAAGTATATGTGCTCT-TTT-GTTCGTT-ACCCTTTTTTCTA-A-CTTTGAGTAA--------------TCT--------TGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATNTTATGTGGGTGGTTTTTTGTTGAATAGTAAAAATTCAAATATATATAATCAGGAATGGATTTTATNGAGCAGGGATAATTGGTANAAGAATTAC-CTAAGCAACTGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTA-TGATCA-TGATC--A--AA-AAATGACGT-ACGA-TCCG--CCC-GT-CC--CG-TGTTAGAT-CAACGTCGG-AAGGCAACGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AGGTGA-TCCAACATC-----ATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CATCAAGTANACA-AATAAATG--GTT--TA---AT---TATGATA-GG-A---GT---GCCTGTANATT--CAATAA-TAATTAA-------ATA--TGAGAT-CGTAATCCCAA-TATTTTTGTAG-AGG--AA-ACTCGGGACGAC--AACAC--------N-----------CTTCGA----G-AC---CATC---AC---GCGCG-TATA--TTTAGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAAA-CT-AATTTACTTGATTTGCAATCCT-AGGAATTTATTC-CAAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNGGACATTGTCGAAA-CGAAAGTAN---TTGC----TAG-T--AGGA-AGGGAGAT-A-CTCTAAC-GA-ACT-CATATC--ATAGG-TANG-CCAGACCTAACGCATAACGATTTTCGACGATGATNAACAATATATTACGATTTCGCCGGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACA--TTCTGATACCCACC-AGGTACAAAATTAAAATTTAACCGGCGACCCACAAAGGTATTGAAATA-ATAAATTTACAACAACCAACAACC
Reference ( gi|1 ) : CACGTGA-CCCT-TTCAGT-ATGGCGGTAGTG------AATT-----------T--------TTGTTTACGTTTTGAGGA-TATTTGAAGCTTTAAAA-TGCCATGT-AAAA--GGTAAATA-CCTTTACTCTGAACAAT-TATGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATG-ACTTAAGTTGGTTATTTAATGCACTTTCTAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTTG-TTATT---TCATTTGATATGTTCCCTTTCCTTTGAAAACTTTTC---CATGTATAAACTACTTATTTAAACTATTAATCA-TTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCAAAA--TTAAAAGTTTCCTGCCAGATCATTTAG-CCTG--AATGTTCTCCACTTTGTGTAGGTCATTTT-CAAAATTT-TTAAAAAAAGTTCAAATCAT-CAAAAAAGTAATCGTTTCTACGGTATGCCATTTTT-ATGT---------------TGTTATTTATATAGTATTTAT-----AGTATATGTGCTCT-TTTTGTTCATTTACCCTTTTTTCTA-C-CTTTGAGTA---------------TCT--------TTTAT-GTCAGAT-AGA-AAGGTACAATACAAAGAAATGT-ATGTGGGTTTTTTTTT-TTAAATA-TAAAAAATCAAATATA----ATCAGGA-TGGATTTTAATGAGCAGG-ATAAT-GGTAAAAGAAT-ACGCTAAGTAA-TGATTAAAAATTATTCTGGGAATTTTATGTTGATCCCCTCAG------AACATAACCC---AAA-GTG-GATA-TGATCAGTGATTGGATTAA-AAATGATGT-ACGACTCCGCTCCCCGTTCC-ACGGTATTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCAACATC-----ATTTGGAGGAT-AT--ACAA--AT-GGAT-ATGATG-CAGTAGATAACCATTAAGTATACAGAATAAATG--GCT--TA---AT---TATGATA-GG-A---GT---GTCTGTATATT--CAATAA-TAATT---------ATA--TGAGATACGTAATCCC-A-TATTTTTGTAG-AGG--AA-CTCCGGGATG----AACAC--------A-----------CTTCGA----G-ACA--CATC---AC---GCGC--TATA-ATTTAGATCTAGGCCTACTAC-ATGGAATATCTATG-AAAAATCTG-CATC-AAAA--CT-AATTTACGTGATTTGCAATCCT-AGGAATTTATTTACAAC-CT-TA--CTTAGAAGAAATGTTTAG-AG-CT-ACTT--TTTT--TTTAT-TTGTGGAGACA--ATCGAAAATGAAAGTACA--TTG-----TAG-T--AGGA-AGGGA-AT-A-CTCTAAT-GA-ACT-CATATCTTATAGG-TAAG-CCAGACCTA-CGCAGAACGATTTTCGACGATGATTGACAA-ATATTACGATTTCGCTCGATTATTCTGCTTCTATTTAT-GCTTGAGGTATATTTC-TAACACTTCCTGATACCCACCGAGGTACAAAATTAAAATTCAACCGGCGACCCAC-AAGGTATTGAAATATAAAAATTTAT-ACAA-C-ACAACCC
gi|11 : CACGTGAACCCTGTTCAGTTATGGCGGTGATGGCAATAAATTGTGCTCCAGATT--------TTGGTTACTTTCTGAGGA-TA-------------AA-TGGCATGTTAAAA--GGTAAATACCCTTTACTCTGAAC
gi|2 : GA-CCTG-TTCAGT-ATGGC--TTGTG------AATT-----------TGTCCTAGATTGGGTACG--TTGAGGAGTA-TTAAAGCTGTAAAATTGGCA-GT-AAAAGTGGT-AATA-CC-TTACTCTGAATGATATA-GACAGT
gi|2 : agaatcattttaaatgtgacgttgtttttaaagttagtcacTTTAC-TGACGAAA--TG---TATGTTCCATATACTTAA-TTG--TATTTAATGCACTTCTAAACATGTT-CTGAAAA-GTTAAATAAGGGATCGTGATTGGC---TCATTTGATATGTTCCCTT--CTTTGAA--CTTGGC---CATGTATAAACTACT-ATT--AACTATTAATCG-TTTAA-ATACA-ACAAACTCAG-ACTTTAAT-GCAATTTTCACCTG-TCTGCTGT--AGTGTTT-GCAAC---TTAAAAGTTTC-TGCCAG-TCATT--G-CCTGGCAA-GTTCTC-ACTTT---TAG-TCATTTTTCAAAATTTGTTAAG------TCGA-TCATTCAACAAAGTAATCATTC------TATGCCATTTCT-ATGT----------------GTTAT----ATA-TATTTAT------GTATATGTGCTCT-TTA-GTTCATT-ACCCTTTTC---A-CACTTTGAG-A---------------T-T--------TGTAT-GGCAGAT-AGA-AA--TACATAACAAGGAAATGTTATGTGGGTGGTTTTTTGTTAAATA-TAA----TCAAATATA----ATCAGGAATGGATTTTATAAAGCAGGGATAATTGGTATAAGAATTAC-CTAAGCA--TGAT--AAAATTATTCTGGGA-TTTTATAT--ATCCCCTGAG------AACATAACCA---AAA-GGGAGGTA-TGATCA-TGATTG-ATAAT-AAATGA-GTGACGA-TCCGCGCCCCGTTCCCACAGT--TAGAT-CAAC-TCGG-AAGGCAATGGGC-TAA-CGGC-CCTT---GTTT-AATAACA-AAGTGA-TC-AACATC-----ACT-GGAGGATCAT--ACAA--AT-GGATTATGATT-CAG-----AAACAT-AAGTAAACATA-TAAATG---CT--TATACAT---TATGATA-GG-A---GTTAGGTCTGTATATT--CAATAA-TAATTTA-------ATA--TGAGAT-CGTAATCCC-AATATTTTTGTAG-AGG--AA-ACTCGGGATGC---AACAC--------T-----------CTC-------G-AC---CATC---ACACAGCGC--TATA--TTTAGATCTAG-CCTACTAC-AT-------CTATG-CAA--TCTGGCATC-AAAAACTT-AATTTGCTTGATTTGCAATCCTTAGGAATT-ATTCAC----CT-TAACCTTAGAA-AAATGTT-AG-AG-CTTACTC--TTTT--TTTGTGTTGTGAGGACATTGTCGAAA-CGAAAGTTAG--TTAC----TAGGT--AGGAGAGGGAGAT-AACTCTAATTGA-ACTTCATATCT-ATAGA-CCCG-CCAGACCTAACGCA--ACGATTTTCGACGATGATGAACAATATA-TACGATTTCGCCGAATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACA--TTCTGATA-CCACC-AGGTACAAAAT--AAATTTAACCGGCGACCCACAAAGGTATTGAAATA-ATAAATTTACAACAACC-ACAAaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttttttactgacgaaatgtatgttccatatacttaattgtatttaatgcacttctaaacatgttctgaaaagttaaataagggatcgtgattggctcatttgatatgttcccttctttgaacttggccatgtataaactactattaactattaatcgtttaaatacaacaaactcagactttaatgcaattttcacctgtctgctgtagtgtttgcaacttaaaagtttctgccagtcattgcctggcaagttctcacttttagtcatttttcaaaatttgttaagtcgatcattcaacaaagtaatcattctatgccatttctatgtgttatatatatttatgtatatgtgctctttagttcattacccttttcacactttgagatttgtatggcagatagaaatacataacaaggaaatgttatgtgggtggttttttgttaaatataatcaaatataatcaggaatggattttataaagcagggataattggtataagaattacctaagcatgataaaattattctgggattttatatatcccctgagaacataaccaaaagggaggtatgatcatgattgataataaatgagtgacgatccgcgccccgttcccacagttagatcaactcggaaggcaatgggctaacggcccttgtttaataacaaagtgatcaacatcactggaggatcatacaaatggattatgattcagaaacataagtaaacatataaatgcttatacattatgataggagttaggtctgtatattcaataataatttaatatgagatcgtaatcccaatatttttgtagaggaaactcgggatgcaacactctcgaccatcacacagcgctatatttagatctagcctactacatctatgcaatctggcatcaaaaacttaatttgcttgatttgcaatccttaggaattattcaccttaaccttagaaaaatgttagagcttactctttttttgtgttgtgaggacattgtcgaaacgaaagttagttactaggtaggagagggagataactctaattgaacttcatatctatagacccgccagacctaacgcaacgattttcgacgatgatgaacaatatatacgatttcgccgaattattctgcttctatttatcgcttgaggcatatttcttaacattctgataccaccaggtacaaaataaatttaaccggcgacccacaaaggtattgaaataataaatttacaacaaccacaaggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|8 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgacctgttcagtatggcttgtgaatttgtcctagattgggtacgttgaggagtattaaagctgtaaaattggcagtaaaagtggtaataccttactctgaatgatatagacagtaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttacttttttttTATTTAATGCACTTTTAAACATGTTTCTGAAAAGGTAAAATAAAC-AGCTTG-GTATTGACTT-TTTGACATGTT-CCTCTTCTTTGAAAACCTTTTTGACATGTATAAACT----------ATTATTAATCAGTTTAATATAC-TACAA-CTCAGGACTTTTA-TGCCATTTTCACCTGTTCCGCTGTGCAGTGggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|5 : TTTGCGAAACTTTAAAA--TTTCTGACAG-TCATTTTGACCTG--CAGGTTCTCCACTTT-TGTAGATCATTTT-TAAAATTT----------GTC--AGTCAT-CAACAAGGCA-TCGTTTCTA-----TGCCATTTTTGATGTGTTGCGTTTTCGGGATGTTTTTTGTTTGTCATATATACAAAACAATGTATGCTCTCTTTCGTTCATTAACCC-TTTTTCTAGA-CTTTGGGTAATCGTAACTTGTGAGTCTCCCAAGTCTGTAT-ATCAGAT-AGA-AA--TACAATACAAcatgaaagtggtaaaa
gi|3 : ctatactaactagagattgtaaacatgaaacaagaggccccaatacaaatttgctatataagtaGTATAT-TGCTCT-TTT-GTGCGTTTACCCTTTTTTCTA-A-CTTGGAGTAA--------------TTC--------TGTATTGTCAGATTAGATAA--TACAATACAAGGAAATTT-A------------------GAATAGTAAAAATTCAAATATATATAATCAGGA-TGGATTTTA-TGAGCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAACTGAT---AAATTAT-CTGGGAATTTTA-AT--ATCCCCTCAGTGTAATAATGTAACCCGAAAAA-GTG-GGTAATGATC-------------A-AGATGATGA-TCGA----------------------ATTA-ATACAACGTCGGTGAAGCAATGTGGATAAGCGGCGC-TT---GTTTTAAT--CATAAGTGAGTCCA-TATCTATTCATTTGGAGGATCATGGACAATTATTGGAT-ATGATG-CAA---ATAATCAT-AAGT-T-CAGAACATATAAAGTTAATA---AT---TATGATA-GG-AGAGGT---GT-GGTAGATTTCCAAGAATTAATTAA-------ATATTTGAGAT-CGTAATCCCAA-TATTTTTGTAGTATGAAAA-CT-CGGGATGACGAAACAC--------T-----------TTTCGA------ACT--CATCACTAC---GTGCG-TATA-TGTTAGATCTAGGCC-ACTACTAT-GAATATCTATGCCAAAATCT--CATCAAAAA--CTGAATTTACGTGA-TTGC-ATCCG-TGGAATGTATTCCTAACTCTGTA--CTCAGAAGAAATG--TAGCAGTCT-ACTTGGTTTTGGTTT-T-TTATGTAGACA--A--GA----GGTAGTACCGTTTGTCGAATAG-T--AGGA-AGGGAGATAA-CTCTAAT-GAGACT-CATGTC-TATAGGTTAAGACCAGAg
gi|4 : CTTCAG------AACATAACCC---AAAAGTG-GGTA-TGACCAGTGATC--AATAATAAATGACAT-ACGA-TCCAGTCCCAGTACC--CGCTGTTAGAT-CAATGTCAG-AAGGCAACGTGC-TAAGCGGC-C-TTAATGTTTTAATA-CA-AGATGA-TCCAACATC-----ATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGTAAACA-AATAAAT---GTT--TA---ATAAATATGATA-GGAA---GT---GCCTGTTGCTT--CAATAA-TAATTA--------ATA--CGAGAT-CGTAATCCCAA-TATTTCTGTAG-AGG--AA-ACTCGGGATGAC--AACACATGATGTGA-----------TTTTGAACTCG-ACCTTCA-C---AC---GCAC--TATATATTTAGATCTAGGCCTACTAC-ATGAAATATCTATG-------CT---ATC-----------ATTTACGTGATTTGGAATCCA-AGGAA-TTATT--CAAC-CT-TA--C-TAGAAGTAATG-TTAG-AG-CT-A--T--TTTT--TTTAT-
gi|7 : ATA-CT-AGATGA-TCCAACATC-----ATTTGGAGG-T-----------AT-GGGT-ATGATGTCAG--AATAA-CATCATGT-T------TAA----------TA---AT---TATGATACGA-A---AT---GCCTGTATATT--CAATAA-TGATTAAAAAAATAATA--TGAGAT-CGTAATCCCAA-TATTTATGTTG-ATG--AA-GCGCGGGATGAC--AACAC--------GTGATTTTTAATCTTC------G-AC---CTTC---ACGT-GCGC--TAT--ATTTAGATCgtcggac
gi|6 : ---------ATA--TGAGAT-CGTAATCCC-A-ATTTTTTTTAG-AGG--AA-ACTCGGGACG----ACAAC--------A-----------CTTCGA-------C---CATC---AC---ACGCACTATA--TTTAGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAA--CT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--CAAC-CT-TA--C-TAGAAG-AGTGGTTAG-A
gi|9 : atgagaaatgatatatatttcaataaatgatagacactatccgttta---------ATA--TGG---ACGTAATCCC-A-ATTTTTTTTAG-AGG--AAACCTCGGGACG----ACAAC--------A-----------CTTCGA----CCATG--CA-C---AC---GCACA-TATA-TTTTAGATCTAGGC-TACTAC-ATGGAATATCTATG-CAAAATCTG-CATC-AAAAA-CT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--CAAC-CT-TA--C-TAGAAGA
gi|12 : ATGAAAGTAG-----G-----AAG-CCAAGGG-AGGTA-A----CTCTAAC-GA-ACT-CAGAT-----GGG-TAGG-CCAGAC-----GTATAATG-----CAACGATGATTAACAA-ATATTACGATTTCGCTTGATTAgtggtt
gi|10 : TACCCACC-AGGTACAAAATTAAA-TTTAACCGGCGACCCAC-AAGGTA-TGAAATA-ATAAATTT-T--CAA-CAACAACC
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ACAAATTTACAACAACCACCAAGCATTAAAATTTTAATGAAGTGCCGTTCGACCCCCCCGTACATTCGGATTTTCTGGAATAGCC
Unaligned ( gi|14 ): ATATGATTTGCAAAGCAGTGAATTGTTCAACTTCTTAGGGAAAAAATGCGCTTCTACTACTTTTTTTTAAATGCTGGATAA
Unaligned ( gi|15 ): TTTAATTGTAAGTGCCGCCGACCCCCCGACATTCATTTCTGGAATTAGGCCCT
Unaligned ( gi|16 ): AAGTGCCTTCCGACCCCCCCATACATTTATTTCTGGAATAGCC
Unaligned ( gi|17 ): CCGCACATTCATTTCTTGGAAGAGCCCTTAGGAAA
Alignments
lowQualScore : 111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111
lowQualScore : 2 2 555555555555555555555555555555 1 222222 11111111111 11 22 2 2 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 4444444 1 2 11 2 22 66666666666 1 333 333333333 22 11 11 11 33 3333 1 2222 333 1 1 77777777777777 11 2222222 2 1111111111111111111111111111111111111111111 1 11 1 111 11 99999999999999999999999 1 1 1 11 22222222222222222222 2 1111 11 1 11 1 22 11 11 222222 111 1 1 2 9999999999999999999999999999999999999999999999999999999 1 1 1 1 1 111 22222 11111 11 1 11 1 2 2222222222 33333333 111 222222222 11 33333333 666666666666666666666666 1111111 33333 2 1 2222 1 1 1 11 11 1 4444444 1 55555555555555 1 1 22222 222 11 1 1 333 11 222 1 2 1 1 22 1 22 2 1 222 22
lowQualScore : 3 3 3 6 1 222222222222222222222222222222 1 1 2 444444 22222222222 7 44 22 7 3 0 5 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 3333333 5 0 88 0 7 3 1 00 1 1 77777777777 7 0 6 2 7 0 22 777 333333333 44 7 44 7 7 6 1 44 1 44 00 7 0 0000 6 6 1 3 5555 111 6 6 3 6 2 7 6 6 44444444444444 44 0 0 7 8888888 7 0 3 3333333333333333333333333333333333333333333 2 0 1 22 0 000 22 55555555555555555555555 0 0 0 33 44444444444444444444 0 3 3333 7 7 44 4 6 7 1 44 3 0 22 88 7 7 7 7 88 888888 2 777 0 0 3 0 0 0000000000000000000000000000000000000000000000000000000 2 0 2 0 2 0 2 0 0 777 3 88 8 8 00000 0 0 0 22222 11 8 8 0 11 0 6 3 2222222222 00000000 8 444 8 8 555555555 6 1 11 8 77777777 77 5 5 5 5 5 1 5 77 333333333333333333333333 5 0000000 5 11111 5 5 5 6 6 6 3 99 3 3 6 3 6 5 9999 6 6 99 5 88 8 0 0 33 33 6 0 11 3333333 2 99999999999999 0 0 55555 2 111 22 0 0 666 33 1 111 5 7 1 3 7 77 5 5 77 6 3 22 3 7 3 333 7 22
lowQualScore : . . . . . .............................. . . . ...... ........... . .. .. . . . . ....................................................................................................... . ....... . . .. . . . . .. . . ........... . . . . . . .. ... ......... .. . .. . . . . .. . .. .. . . .... . . . . .... ... . . . . . . . . .............. .. . . . ....... . . . ........................................... . . . .. . ... .. ....................... . . . .. .................... . . .... . . .. . . . . .. . . .. .. . . . . .. ...... . ... . . . . . ....................................................... . . . . . . . . . ... . .. . . ..... . . . ..... .. . . . .. . . . .......... ........ . ... . . ......... . . .. . ........ .. . . . . . . . .. ........................ . ....... . ..... . . . . . . . .. . . . . . . .... . . .. . .. . . . .. .. . . .. ....... . .............. . . ..... . ... .. . . ... .. . ... . . . . . .. . . .. . . .. . . . ... . ..
lowQualScore : 0 3 7 7 0 000000000000000000000000000000 0 0 0 777777 00000000000 3 77 00 3 3 0 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5555555 5 0 33 7 3 3 0 77 0 0 77777777777 3 7 7 0 3 7 00 333 333333333 00 3 77 3 3 7 0 77 0 77 00 3 7 3333 7 7 0 3 7777 000 7 7 3 7 3 3 7 7 33333333333333 77 7 7 3 7777777 3 7 3 7777777777777777777777777777777777777777777 5 0 2 00 0 222 55 22222222222222222222222 0 0 0 88 33333333333333333333 7 3 0000 3 3 77 0 7 3 0 77 3 7 33 33 3 3 3 3 33 888888 0 555 0 0 2 8 0 8888888888888888888888888888888888888888888888888888888 5 0 5 0 0 0 5 0 0 555 2 88 0 0 00000 8 8 8 66666 00 0 0 6 00 8 0 2 4444444444 00000000 0 000 0 0 000000000 4 0 00 0 77777777 99 7 0 7 7 7 4 0 99 999999999999999999999999 7 0000000 7 11111 7 7 7 7 7 7 2 22 7 2 7 0 7 5 3333 7 7 22 5 88 0 0 0 88 88 5 0 77 3333333 0 77777777777777 0 0 00000 5 000 00 0 0 222 88 0 000 3 3 0 7 3 33 0 5 55 7 3 77 7 3 3 333 3 00
consensus : CACGTGANCCCTGTTCAGT-ATGGCGGTNGTG------AATT----T-----TTGT------TTGGTTACGTTCTGAGGA-TATT-AAAGCT-TAAAATTGGCATGTTAAAAG-GGTAAATACC-TTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAAG-TAAAATAAG-GATCTTG--ATTG-C---TCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTACT-ATT--AACTATTAATCG-TTTAATATACATACAAACTCAGGACTTTAATTGCCATTTTCACCTGTTCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTG--AAGGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTT----AAG--TCGAGTCATTCAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTG-----------TGTT-TTTGTATATCATTTAT-------AGTATATGTGCTC-TTTCGTTCA-TT-ACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGGT--TTTTTT-TTAAATA-TAAAAA-TCAAATATATATAATCAGGAATGGATTTTAT-GAGCAGGGATAATTGGTAAAAGAATTAC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCCG-T-C---CC-GT-CCC---G-C-GTTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CAT-AAGT---AAACA-NATAAATGGTTA-TA-AT---TATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AATT--------AATAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------TCTTCGA----GAC-CAT---C---ACGC-GC---GCTAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATC-AAAAACT-AATTTACNTGATTTGCAATCCT-AGGAATTTATTC-C-AAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--GTCG-AAACGAAAGT-AC--GTTGC----TAG-TAGGA-AG-----GGAGAT-AACTCTAAT-GA-ACT-CATATCT-ATAGGT--AGGCCAGACCT-ACGCA-AACGATTTTCGACGATGATTAACAA-ATATTACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACC-ACAACC
Reference ( family-447 ) : CACGTGAACCCGGTTCAGTTATGGCGGTNGTGGCAATAAATTGTGCTCCAGATTGTCCTAGATTGGNTACNTTCTGAGGAGTATT-AAAGCTGTAAAATTGGCATGTTAAAAGTGGTAAATACCCTTTACTCTGAACGAT-ATAGACAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAC-TGACGAAA--TG---TATGTTCCATATACTTAA-TTG--TATTTAATGCACTTCTAAACATGTTTCTGAAAAGGTNAAATAAGNGANCNTG--ANTGNCGACTCATTTGACATGTTCCCTCTTCTTTGAAAACCTNNCTGACATGTATAAACTACT-ATT--AACTATTAATCGGTTTAATATACATACAAACTCAGGACTTTNATTGCNATTTTCACCTGTTCCGCTGTGCAGTGTTTTGCGANACTTTAAAAGTTTCCTGNCAG-TCATTTTGACCTGGCNAGGTTCTCCACTTT-TGTAGATCATTTTTCAAAATTTGTT----AAGGTCCGAGTCATTCAACAAGGCAATCGTTCCTA---TATGCCATTTCTGATGTGTTGCGTTTTCGGGATGTTNTTTGTNTGTCATNTATACAAA--AGTATATGTGCTC-TTTTGTTCG-TT-ACCCTTTTTTCTA-ACTTTGAGTAATC----------------------TTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATNTTATGTGGGTGGTTTTTTGTTGAATAGTAAAAATTCAAATATATATAATCAGGAATGGATTTTATNGAGCAGGGATAATTGGTANAAGAATTAC-CTAAGCAACTGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCA-TGATC---A----A--A-AAATGACGT-ACGA-TCCG---C---CC-GT-CCC---G-T-GTTAGAT-CAACGTCGG-AAGGCAACGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AGGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CATCAAGT---ANACA-AATAAATGGTT--TA-AT---TATGATA-GG-AG-----T---GCCTGTANATT--CAATAAT-AATTA-------AATAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------NCTTCGA----GAC-CAT---C---ACGC-GC---G-TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAAACT-AATTTACTTGATTTGCAATCCT-AGGAATTTATTC-C-AAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNGGACATTGTCG-AAACGAAAGT-A---NTTGC----TAG-TAGGA-AG-----GGAGAT-A-CTCTAAC-GA-ACT-CATATC--ATAGGT--ANGCCAGACCTAACGCATAACGATTTTCGACGATGATNAACAATATATTACGATTTCGCCGGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACA--TTCTGATACCCACC-AGGTACAAAATTAAAATTTAACCGGCGACCCACAAAGGTATTGAAATA-ATAAATTT---ACAACAACCAACAACC
gi|1 : CACGTGACCCT--TTCAGT-ATGGCGGTAGTG------AATT----T-----TTGT----------TTACGTTTTGAGGA-TATTTGAAGCTTTAAAAT-GCCATGT-AAAAG--GTAAATACC-TTTACTCTGAACAATTAT-GACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATG-ACTTAAGTTGGTTATTTAATGCACTTTCTAACATGTTTCTGAAAAG-TAAAATAAG-GATCTTGTTATT------TCATTTGATATGTTCCCTTTCCTTTGAAAACTTTTC---CATGTATAAACTACTTATTTAAACTATTAATCA-TTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCAAAA--TTAAAAGTTTCCTGCCAGATCATTTAG-CCTG--AATGTTCTCCACTTTGTGTAGGTCA-TTTTCAAAATTT-TTAAAAAAAGTTCAAATCA-TCAAAAAAGTAATCGTTTCTACGGTATGCCATTTTT-ATGT---------------TGTTATTTATATAGTATTTAT-------AGTATATGTGCTCTTTTTGTTCATTT-ACCCTTTTTTCTA-CCTTTGAGT-ATC----------------------TTTTAT-GTCAGAT-AGA-AAGGTACAATACAAAGAAATG-TATGTGGGT-TTTTTTTTTTAAATA-TAAAAAATCAA----ATATAATCAGG-ATGGATTTTAATGAGCA-GGATAA-TGGTAAAAGAA-TACGCTAAGTAA-TGATTAAAAATTATTCTGGGAATTTTATGTTGATCCCCTCAG------AACATAACCC---AAA-GTG-GATATGATCAGTGATT---GGATTA--A-AAATGATGT-ACGACTCCGCTCC---CC-GT-TCCACGG-T-ATTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGAT-AT--ACAA--AT-GGAT-ATGATG-CAGTAGATAACCATTAAGT---ATACAGAATAAATGGCT--TA-AT---TATGATA-GG-AG-----T---GTCTGTATATT--CAATAAT-AATT---------ATAT--GAGATACGTAATCCC-ATATTTTTGTAG-A-GGAACT-CCGGGATG----AACAC-----------ACTTCGA----GACACAT---C---ACGC-GC-----TATAAT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-AAAAATCTG-CATC--AAAACT-AATTTACGTGATTTGCAATCCT-AGGAATTTATTTAC-AAC-CT-TA--CTTAGAAGAAATGTTTAG-AG-CT-ACTT--TTTT--TTTAT-TTGTGGAGACA--ATCGAAAATGAAAGT-AC--ATTG-----TAG-TAGGA-AG-----GGA-AT-A-CTCTAAT-GA-ACT-CATATCTTATAGGT--AAGCCAGACCT-ACGCAGAACGATTTTCGACGATGATTGACAA-ATATTACGATTTCGCTCGATTATTCTGCTTCTATTTAT-GCTTGAGGTATATTTC-TAACACTTCCTGATACCCACCGAGGTACAAAATTAAAATTCAACCGGCGACCCAC-AAGGTATTGAAATATAAAAATTT---AT-ACAAC--ACAACC
gi|10 : TACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTA-TGAAATA-ATAAATTTTCAACAACAACCAc
gi|11 : CACGTGAACCCTGTTCAGTTATGGCGGTGATGGCAATAAATTGTGCTCCAGATT--------TTGGTTACTTTCTGAGGA----T-AAA----------TGGCATGTTAAAA--GGTAAATACCCTTTACTCTGAACgcataaaatttaaattgaagtgccgtccgacccccccgtacattcatttctggaatagccct
gi|12 : AG-TAGGA-AGCCAAGGGAGGT-AACTCTAAC-GA-ACT-CAGAT-----GGGT--AGGCCAGAC-----GTATAATG-----CAACGATGATTAACAA-ATATTACGATTTCGCTTGATTA
gi|2 : atgaaCCTGTTCAGT-ATGGC--TTGTG------AATT-----------TGTCCTAGATTGGGTACGTT--GAGGAGTATT-AAAGCTGTAAAATTGGCA-G-TAAAAGTGGT-AATACC--TTACTCTGAATGAT-ATAGACAGT
gi|2 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgaTTTAC-TGACGAAA--TG---TATGTTCCATATACTTAA-TTG--TATTTAATGCACTTCTAAACATGTT-CTGAAAAG-TTAAATAAGGGATCGTG--ATTGGC---TCATTTGATATGTTCCCT--TCTTTGAA--CTTGGC---CATGTATAAACTACT-ATT--AACTATTAATCG-TTTAA-ATACA-ACAAACTCAG-ACTTTAAT-GCAATTTTCACCTGT-CTGCTGT--AGTGTTT-GCAAC---TTAAAAGTTTC-TGCCAG-TCATT---GCCTGGCAAG-TTCTC-ACTTT-T--AG-TCATTTTTCAAAATTTGTT----AAG--TCGA-TCATTCAACAAAGTAATCATTC------TATGCCATTTCT-ATGTGTTA--------------------TATAT-ATTTAT--------GTATATGTGCTC-TTTAGTTCA-TT-ACCCTTTTCAC---ACTTTGAG--AT-----------------------TTGTAT-GGCAGAT-AGA-AA--TACATAACAAGGAAATGTTATGTGGGTGGTTTTTTGTTAAATA-TAA----TCAAATATA----ATCAGGAATGGATTTTATAAAGCAGGGATAATTGGTATAAGAATTAC-CTAAGCA--TGAT--AAAATTATTCTGGGA-TTTTATAT--ATCCCCTGAG------AACATAACCA---AAA-GGGAGGTATGATCA-TGATTGATA----A--T-AAATGA-GTGACGA-TCCG---CGCCCC-GTTCCC---A-CAGTTAGAT-CAAC-TCGG-AAGGCAATGGGC-TAA-CGGC-CCTT---GTTT-AATAACA-AAGTGA-TC-A-----ACATCACT-GGAGGATCAT--ACAA--AT-GGATTATGAT-TCAG--AA--A-CAT-AAGT---AAACA-TATAAATGCTTA-TACAT---TATGATA-GG-AG-----TTAGGTCTGTATATT--CAATAAT-AATTT-------AATAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGATG-C--AACAC-----------TCTC-------GAC-CAT---C---ACACAGC---GCTAT-AT-TT-AGATCTAG-CCTACTAC-AT-------CTATG-CAA--TCTGGCATCAAAAACTT-AATTTGCTTGATTTGCAATCCTTAGGAATT-ATTC----AC-CT-TAACCTTAGAA-AAATG-TTAG-AG-CTTACTC--TTTT--TTTGTGTTGTGAGGACATTGTCG-AAACGAAAGTTA---GTTAC----TAGGTAGGAGAG-----GGAGAT-AACTCTAATTGA-ACTTCATATCT-ATAGAC--CCGCCAGACCTAACGCA--ACGATTTTCGACGATGATGAACAATATAT-ACGATTTCGCCGAATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACA--TTCTGATA-CCACC-AGGTACAAAAT--AAATTTAACCGGCGACCCACAAAGGTATTGAAATA-ATAAATTT---ACAACAACC-ACAAaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttttttactgacgaaatgtatgttccatatacttaattgtatttaatgcacttctaaacatgttctgaaaagttaaataagggatcgtgattggctcatttgatatgttcccttctttgaacttggccatgtataaactactattaactattaatcgtttaaatacaacaaactcagactttaatgcaattttcacctgtctgctgtagtgtttgcaacttaaaagtttctgccagtcattgcctggcaagttctcacttttagtcatttttcaaaatttgttaagtcgatcattcaacaaagtaatcattctatgccatttctatgtgttatatatatttatgtatatgtgctctttagttcattacccttttcacactttgagatttgtatggcagatagaaatacataacaaggaaatgttatgtgggtggttttttgttaaatataatcaaatataatcaggaatggattttataaagcagggataattggtataagaattacctaagcatgataaaattattctgggattttatatatcccctgagaacataaccaaaagggaggtatgatcatgattgataataaatgagtgacgatccgcgccccgttcccacagttagatcaactcggaaggcaatgggctaacggcccttgtttaataacaaagtgatcaacatcactggaggatcatacaaatggattatgattcagaaacataagtaaacatataaatgcttatacattatgataggagttaggtctgtatattcaataataatttaatatgagatcgtaatcccaatatttttgtagaggaaactcgggatgcaacactctcgaccatcacacagcgctatatttagatctagcctactacatctatgcaatctggcatcaaaaacttaatttgcttgatttgcaatccttaggaattattcaccttaaccttagaaaaatgttagagcttactctttttttgtgttgtgaggacattgtcgaaacgaaagttagttactaggtaggagagggagataactctaattgaacttcatatctatagacccgccagacctaacgcaacgattttcgacgatgatgaacaatatatacgatttcgccgaattattctgcttctatttatcgcttgaggcatatttcttaacattctgataccaccaggtacaaaataaatttaaccggcgacccacaaaggtattgaaataataaatttacaacaaccacaaggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|3 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgacctgttcagtatggcttgtgaatttgtcctagattgggtacgttgaggagtattaaagctgtaaaattggcagtaaaagtggtaataccttactctgaatgatatagacagtaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttacttttttttGTATAT-TGCTC-TTTTGTGCG-TTTACCCTTTTTTCTA-ACTTGGAGTAATT----------------------CTGTATTGTCAGATTAGATAA--TACAATACAAGGAAAT-TTA------------------GAATAGTAAAAATTCAAATATATATAATCAGGA-TGGATTTTAT-GAGCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAACTGAT--AAA-TTAT-CTGGGAATTTTA-AT--ATCCCCTCAGTGTAATAATGTAACCCGAAAAA-GTG-GGTA-----A-TGATC---A----A--------GATG--ATGA-TC---------------------G-A-ATTA-ATACAACGTCGGTGAAGCAATGTGGATAAGCGGCGC-TT---GTTTTAAT--CATAAGTGAGTCCATATCTAT-TCATTTGGAGGATCATGGACAATTATTGGAT-ATGATG-CA---AATAATCAT-AAGTTCAGAACA-TATAAA--GTTAATA-AT---TATGATA-GG-AGAGGTGT---G---GTAGATTTCCAAGAATTAATTA-------AATATTTGAGAT-CGTAATCCCAATATTTTTGTAGTATGAAAAC-TCGGGATGACGAAACAC-----------TTTTCGA----ACT-CAT---CACTACGT-GC---G-TAT-ATGTT-AGATCTAGGCC-ACTACTAT-GAATATCTATGCCAAAATCT--CATC-AAAAACTGAATTTACGTGA-TTGC-ATCCG-TGGAATGTATTC-CTAACTCTGTA--CTCAGAAGAAATG--TAGCAGTCT-ACTTGGTTTTGGTTT-T-TTATGTAGACA-------AGA-GGTAGT-ACCGTTTGTCGAATAG-TAGGA-AG-----GGAGATAA-CTCTAAT-GAGACT-CATGTCT-ATAGGTTAAGACCAGAggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|4 : CTTCAG------AACATAACCC---AAAAGTG-GGTATGACCAGTGATC---A----ATAATAAATGACAT-ACGA-TCCAGT-C---CCAGTACCC---GCT-GTTAGAT-CAATGTCAG-AAGGCAACGTGC-TAAGCGGC-C-TTAATGTTTTAATA-CA-AGATGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CAT-AAGT---AAACA-AATAAAT-GTT--TA-ATAAATATGATA-GGAAG-----T---GCCTGTTGCTT--CAATAAT-AATT--------AATAC--GAGAT-CGTAATCCCAATATTTCTGTAG-A-GGAAAC-TCGGGATGAC--AACACATGATGTG---ATTTTGAACTCGAC-CTT---C---ACAC-GCACTA-TAT-AT-TT-AGATCTAGGCCTACTAC-ATGAAATATCTATG-C---------TATC----------ATTTACGTGATTTGGAATCCA-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGTAATG-TTAG-AG-CT-ATTT--TTTT--TATGT-
gi|5 : TTTGCGAAACTTTAAAA--TTTCTGACAG-TCATTTTGACCTG--CAGGTTCTCCACTTT-TGTAGATCATTTTT-AAAATTTGTC----A--------GTCAT-CAACAAGGCA-TCGTTTCTA---T--GCCATTTTTGATGTGTTGCGTTTTCGGGATGTTTTTTGTTTGTCATATATACAAAACAATGTATGCTCTC-TTTCGTTCA-TT-AACCCTTTTTCTAGACTTTGGGTAATCGTAACTTGTGAGTCTCCCAAGTCTGTAT-ATCAGAT-AGA-AA--TACAATACAAGcggac
gi|6 : ctatactaactagagattgtaaacatgaaacaagaggccccaatacaaatttgctatataagtaTTT-------AATAT--GAGAT-CGTAATCCCAAT-TTTTTTTAG-A-GGAAAC-TCGGGACGAC--AACAC-------------TTCGA------C-CAT---C---ACAC-GC---ACTAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATC-AAAAACT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGAGTGG-TTAG-A
gi|7 : atgagaaatgatatatatttcaataaatgatagacactatccgATA-CT-AGATGA-TCCA-----ACATCATTTGGAGG-T-----------AT-GGGT-ATGATGTCAG--AATAA-CATCATGT----------TTAA--------TA-AT---TATGATACGA-AA-----T---GCCTGTATATT--CAATAAT-GATTAAAAAAATAATAT--GAGAT-CGTAATCCCAATATTTATGTTG-A-TGAAGC-GCGGGATGAC--AACACGTGATTTTTAATCTTC------GAC-CTT---C---ACGT-GC---GCTAT-AT-TT-AGATC
gi|8 : --TATTTAATGCACTTTTAAACATGTTTCTGAAAAGGTAAAATAAAC-AGCTTG---GTATTGACTT-TTTGACATGTT-CCTCTTCTTTGAAAACCTTTTTGACATGTATAAACT----------ATTATTAATCAGTTTAATATAC-TAC-AACTCAGGACTTTTA-TGCCATTTTCACCTGTTCCGCTGTGCAGTG
gi|9 : ATAT--G-GA--CGTAATCCCAAT-TTTTTTTAG-A-GGAAACCTCGGGACGAC--AACAC-------------TTCGA------C-CATGCAC---ACGC-AC---A-TAT-AT-TTTAGATCTAGGC-TACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAA-ACT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGAcatgaaagtggtaaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACAAATTTACAACAACCACCAAGCATTAAAATTTTAATGAAGTGCCGTTCGACCCCCCCGTACATTCGGATTTTCTGGAATAGCC
Unaligned ( gi|14 ): ATATGATTTGCAAAGCAGTGAATTGTTCAACTTCTTAGGGAAAAAATGCGCTTCTACTACTTTTTTTTAAATGCTGGATAA
Unaligned ( gi|15 ): TTTAATTGTAAGTGCCGCCGACCCCCCGACATTCATTTCTGGAATTAGGCCCT
Unaligned ( gi|16 ): AAGTGCCTTCCGACCCCCCCATACATTTATTTCTGGAATAGCC
Unaligned ( gi|17 ): CCGCACATTCATTTCTTGGAAGAGCCCTTAGGAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 1 11 77777777777777777777 111 11 1 333333333333 11 22 1 1 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 222 1 1 11 1 1 4444444 1 222 1 11 11 2 11 11 11 1 11 1 222 11 1 6666666666666 11 222222 1 9999999999999999999999999 1 33333333 1 1 1 111 11 99999999999999999999999 1 1 1 11 11 444444444444 111 1 11 1 1 11 1 22 11 11 222222 111 1 1 7777777777777777777777777777777777777777777777777777777 1 1 1 1 1 111 22222 11111 11 1 11 1 111 111 222 222222222 11 22222222 6666666666666666666666666666666 11 11 1 1 2222 1 1 1 11 11 1 22222222222 2222 44444 1 1 22222 1 1 1 11 11 1 3333 1 1 1 11 1 1 1 1 222
lowQualScore : 0 6 3 6 1 88 00000000000000000000 222 11 3 777777777777 7 7 44 55 7 3 7 5 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 88 000 5 5 88 7 3 3 3333333 7 6 2 7 333 3 88 7 7 44 3 6 44 44 88 7 2 88 6 6 3 444 77 3 6 3 7 7 6 6 1111111111111 44 7 888888 7 3 1111111111111111111111111 2 99999999 2 0 4 0 0 000 22 55555555555555555555555 0 0 0 33 44 7 333333333333 777 7 3 7 7 44 3 3 6 7 44 3 00 88 7 7 7 7 88 888888 2 777 0 0 3 0 6 3333333333333333333333333333333333333333333333333333333 2 0 2 0 0 2 0 0 777 3 88 8 8 00000 0 0 0 22222 11 8 8 0 11 0 6 8 0 444 1 222 0 5 444 8 8 8 555555555 6 0 11 8 44444444 6 5 77 5 5 5 5 5 1 5 77 4444444444444444444444444444444 5 5 00 5 99 5 5 5 6 6 6 3 99 7 3 1 6 5 9999 6 6 99 5 88 8 0 0 33 33 6 0 1 99999999999 0000 00000 0 0 55555 2 3 0 0 0 22 33 0 3 3333 7 7 3 3 5 5 88 6 3 7 3 3 7 3 333 7 6
lowQualScore : . . . . . .. .................... ... .. . ............ . . .. .. . . . . . ...................................................................................................... . .. ... . . .. . . . ....... . . . . ... . .. . . .. . . .. .. .. . . .. . . . ... .. . . . . . . . ............. .. . ...... . . ......................... . ........ . . . . . ... .. ....................... . . . .. .. . ............ ... . . . . .. . . . . .. . .. .. . . . . .. ...... . ... . . . . . ....................................................... . . . . . . . . ... . .. . . ..... . . . ..... .. . . . .. . . . . ... . ... . . ... . . . ......... . . .. . ........ . . .. . . . . . . . .. ............................... . . .. . .. . . . . . . . .. . . . . . .... . . .. . .. . . . .. .. . . . ........... .... ..... . . ..... . . . . . .. .. . . .... . . . . . . .. . . . . . . . ... . .
lowQualScore : 5 7 3 7 0 33 00000000000000000000 000 00 3 333333333333 3 3 77 33 3 3 3 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 55 555 5 0 33 3 3 3 0000000 3 7 0 3 333 3 33 3 3 77 7 7 77 77 33 3 0 33 7 7 3 333 33 7 7 3 3 3 7 7 3333333333333 77 3 000000 3 3 3333333333333333333333333 0 88888888 5 0 2 0 0 222 55 22222222222222222222222 0 0 0 88 00 3 000000000000 777 3 3 3 3 77 3 3 7 3 77 3 77 33 3 3 3 3 33 888888 0 555 0 0 2 8 5 0000000000000000000000000000000000000000000000000000000 5 0 5 0 0 5 0 0 555 2 88 0 0 00000 8 8 8 66666 00 0 0 6 00 8 0 0 8 000 0 666 8 0 888 0 0 0 000000000 4 6 00 0 22222222 7 7 99 7 0 7 7 7 4 0 99 0000000000000000000000000000000 7 7 77 7 33 7 7 7 7 7 7 2 22 3 3 0 7 5 3333 7 7 22 5 88 0 0 0 88 88 5 0 0 00000000000 3333 33333 0 0 00000 5 2 0 0 0 55 88 2 3 7777 3 3 3 7 0 5 00 7 3 3 3 3 3 3 333 3 7
consensus : CACGTGAACCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTGT----G--------TTTGG-TACGTTCTGAGGA-TATT-GAAGCT-T-AAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTTG-TATTGGCTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTAC-TATT--AACTATTAATCGTTTAATATACATAC-AACTCAGGACTTTAATTGCCATTTTCACCTGTTCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGN-ANGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCATTCAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTC-TTTCGTTCA-TT-ACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGG--T--TTTTTT-TTAAATA-T-AAAAAT-CAAATATATATAATCAGGAATGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAATTAC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-G--C--CCC-GT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-NATAAATGNTTAA-TA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AAT--------T-AA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T-------CTTCGA----GAC-CAT-CAC-AC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AGGAATTTATTC-C-AAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--ATCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCT-ACGC--AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
Reference ( family-447 ) : CACGTGANCCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTTT----G--------TTTGGTTACGTTCTGAGGA-TATT-AAAGCT-TAAAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTTG--ATTG-CTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTAC-TATT--AACTATTAATCGTTTAATATACATACAAACTCAGGACTTTAATTGCCATTTTCACCTGTTCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGA-AGGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCATTCAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTC-TTTCGTTCA-TT-ACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGG--T--TTTTTT-TTAAATA-T-AAAAAT-CAAATATATATAATCAGGAATGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAATTAC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-G--T--CCC-GT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-NATAAATGGTT-A-TA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AAT--------T-AA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T-------CTTCGA----GAC-CAT-CAC-GC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AGGAATTTATTC-C-AAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--GTCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCT-ACGCA-AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
gi|1 : CACGTGA-CCCT-TTCAGT-ATGGCGGTAGTG--AAT---TTTT----G--------TTT----ACGTTTTGAGGA-TATTTGAAGCT-TTAAAATGCCATGT--AAAA-GGTAAATA-CCTTTACTCTGAACAATTAT-GACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATG-ACTTAAGTTGGTTATTTAATGCACTTTCTAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTTGTTATT---TCATTTGATATGTTCCCTTTCCTTTGAAAACTTTTC---CATGTATAAACTACTTATTTAAACTATTAATCATTTAATATACATAC-AACTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCAAAA--TTAAAAGTTTCCTGCCAGATCATTT-AGCCTGA-ATGTTCTCCACTTTGTGTAGGTCA-TTTTCAAAATTT-TTAAAAAAAGTTCAAATCA-TCAAAAAAGTAATCGTTTCTACGGTATGCCATTTTT-ATGT----TGTTATT------------TATATAGTATTTATA-------GTATATGTGCTCTTTTTGTTCATTT-ACCCTTTTTTCTA-CCTTTGAGT-ATC----------------------TTTTAT-GTCAGAT-AGA-AAGGTACAATACAAAGAAATG-TATGTGGGTTT--TTTTTT-TTAAATA-TAAAAAAT-CAA----ATATAATCAGG-ATGGATTTTAATGA-GCA-GGATAA-TGGTAAAAGAA-TACGCTAAGTAA-TGATTAAAAATTATTCTGGGAATTTTATGTTGATCCCCTCAG------AACATAACCC---AAA-GTG-GATATGATCAGTGATT---GGATTA--A-AAATGATGT-ACGACTCC-GCTC--CCC-GT-TCCAC-GGTATTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGAT-AT--ACAA--AT-GGAT-ATGATG-CAGTAGATAACCATTAAGT---ATACAGAATAAATGGCT---TA-ATTATGATA-GG-AG-----T---GTCTGTATATT--CAATAAT-AAT--------T--A-TAT--GAGATACGTAATCCC-ATATTTTTGTAG-A-GGAACT-CCGGGATG----AACAC-----------A-------CTTCGA----GACACAT-CA---C-GCGC--TATAAT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-AAAAATCTG-CATC-AAAACT-AATTTACGTGATTTGCAATCCT-AGGAATTTATTTAC-AAC-CT-TA--CTTAGAAGAAATGTTTAG-AG-CT-ACTT--TTTT--TTTAT-TTGTGGAGACA--ATCGAAAATGAAAGTA-CA-TTG-----TAG-TAGGA-AG-----GGA-AT-ACTCTAAT-GA-ACT-CATATCTTATAGGT--AAGCCAGACCT-ACGCAGAACGATTTTCGACGATGATTGACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTAT-GCTTGAGGTATATTTC-TAACACTTCCTGATACCCACCGAGGTACAAAATTAAAATTCAACCGGCGACCCAC-AAGGTATTGAAATATAAAAATTT---AT-ACAA-CACAACC
gi|10 : TACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTA-TGAAATA-ATAAATTTTCAACAACAACCAc
gi|11 : CACGTGAACCCTGTTCAGTTATGGCGGTGATGGCAATAAATTGT----GCTCCAGATTTTGGTTACTTTCTGAGGA-TA-------------AAT-GGCATGTTAAAA--GGTAAATACCCTTTACTCTGAACagcataaaatttaaattgaagtgccgtccgacccccccgtacattcatttctggaatagccct
gi|12 : AG-TAGGA-AGCCAAGGGAGGTAACTCTAAC-GA-ACT-CAGAT-----GGGT--AGGCCAGACGT-AT----AATG-----CAACGATGATTAACAAATAT-TACGATTTCGCTTGATTA
gi|2 : atgaaCCTGTTCAGT-ATGGC--TTGTG--AAT---TTGTCCTAG--------ATTGGGTACGT--TGAGGAGTATT-AAAGCTGTAAAATTGGCA-G-TAAAAGTGGT-AATA-CC-TTACTCTGAATGA-TATAGACAGT
gi|2 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgaTTTAC-TGACGAAA--TG---TATGTTCCATATACTTAA-TTG--TATTTAATGCACTTCTAAACATGTT-CTGAAAA-GTTAAATAAGGGATCGTG--ATTGGCTCATTTGATATGTTCCCT--TCTTTGAA--CTTGGC---CATGTATAAACTAC-TATT--AACTATTAATCGTTTAA-ATACA-ACAAACTCAG-ACTTTAAT-GCAATTTTCACCTGT-CTGCTGT--AGTGTTT-GC-AAC--TTAAAAGTTTC-TGCCAG-TCATT---GCCTGGCAAGTTCTC-ACTTT-TA---GTCATTTTTCAAAATTTGTTAAG------TCGA-TCATTCAACAAAGTAATCATTC------TATGCCATTTCT-ATGTGTTAT---------------------ATAT-ATTTAT--------GTATATGTGCTC-TTTAGTTCA-TT-ACCCTTTTCAC---ACTTTGAG--ATT-----------------------TGTAT-GGCAGAT-AGA-AA--TACATAACAAGGAAATGTTATGTGGG--TGGTTTTTTGTTAAATA-T-AA---T-CAAATATA----ATCAGGAATGGATTTT-ATAAAGCAGGGATAATTGGTATAAGAATTAC-CTAAGCA--TGAT--AAAATTATTCTGGGA-TTTTATAT--ATCCCCTGAG------AACATAACCA---AAA-GGGAGGTATGATCA-TGATTGATA----A--T-AAATGA-GTGACGA-TCC-G--CGCCCC-GTTCCCACAG---TTAGAT-CAAC-TCGG-AAGGCAATGGGC-TAA-CGGC-CCTT---GTTT-AATAACA-AAGTGA-TC-A-----ACATCACT-GGAGGATCAT--ACAA--AT-GGATTATGAT-TCAG--AA--A-CA-TAAGT---AAACA-TATAAATGCTT-A-TACATTATGATA-GG-AG-----TTAGGTCTGTATATT--CAATAAT-AAT--------TTAA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGATG-C--AACAC-----------T-------CTC-------GAC-CAT-CAC-ACAGCGC--TAT-AT-TT-AGATCTAG-CCTACTAC-AT-------CTATG-CAA--TCTGGCATCAAAAACTTAATTTGCTTGATTTGCAATCCTTAGGAATT-ATTC----AC-CT-TAACCTTAGAA-AAATG-TTAG-AG-CTTACTC--TTTT--TTTGTGTTGTGAGGACATTGTCG-AAACGAAAGTT-AG-TTAC----TAGGTAGGAGAG-----GGAGATAACTCTAATTGA-ACTTCATATC-TATAGAC--CCGCCAGACCTAACGC--AACGATTTTCGACGATGATGAAC-AATATATACGATTTCGCCGAATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACA--TTCTGATA-CCACC-AGGTACAAAA-T-AAATTTAACCGGCGACCCACAAAGGTATTGAAATA-ATAAATTT---ACAACAACCACAAaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttttttactgacgaaatgtatgttccatatacttaattgtatttaatgcacttctaaacatgttctgaaaagttaaataagggatcgtgattggctcatttgatatgttcccttctttgaacttggccatgtataaactactattaactattaatcgtttaaatacaacaaactcagactttaatgcaattttcacctgtctgctgtagtgtttgcaacttaaaagtttctgccagtcattgcctggcaagttctcacttttagtcatttttcaaaatttgttaagtcgatcattcaacaaagtaatcattctatgccatttctatgtgttatatatatttatgtatatgtgctctttagttcattacccttttcacactttgagatttgtatggcagatagaaatacataacaaggaaatgttatgtgggtggttttttgttaaatataatcaaatataatcaggaatggattttataaagcagggataattggtataagaattacctaagcatgataaaattattctgggattttatatatcccctgagaacataaccaaaagggaggtatgatcatgattgataataaatgagtgacgatccgcgccccgttcccacagttagatcaactcggaaggcaatgggctaacggcccttgtttaataacaaagtgatcaacatcactggaggatcatacaaatggattatgattcagaaacataagtaaacatataaatgcttatacattatgataggagttaggtctgtatattcaataataatttaatatgagatcgtaatcccaatatttttgtagaggaaactcgggatgcaacactctcgaccatcacacagcgctatatttagatctagcctactacatctatgcaatctggcatcaaaaacttaatttgcttgatttgcaatccttaggaattattcaccttaaccttagaaaaatgttagagcttactctttttttgtgttgtgaggacattgtcgaaacgaaagttagttactaggtaggagagggagataactctaattgaacttcatatctatagacccgccagacctaacgcaacgattttcgacgatgatgaacaatatatacgatttcgccgaattattctgcttctatttatcgcttgaggcatatttcttaacattctgataccaccaggtacaaaataaatttaaccggcgacccacaaaggtattgaaataataaatttacaacaaccacaaggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|3 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgacctgttcagtatggcttgtgaatttgtcctagattgggtacgttgaggagtattaaagctgtaaaattggcagtaaaagtggtaataccttactctgaatgatatagacagtaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttt-------GTATAT-TGCTC-TTTTGTGCG-TTTACCCTTTTTTCTA-ACTTGGAGTAATT----------------------CTGTATTGTCAGATTAGATAA--TACAATACAAGGAAAT-TTA--------------------GAATAGT-AAAAATTCAAATATATATAATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAACTGAT--AAA-TTAT-CTGGGAATTTTA-AT--ATCCCCTCAGTGTAATAATGTAACCCGAAAAA-GTG-GGTA------ATGATC---A----A--------GATG--ATGA-TC------------------GA-A---TTA-ATACAACGTCGGTGAAGCAATGTGGATAAGCGGCGC-TT---GTTTTAAT--CATAAGTGAGTCCATATCTAT-TCATTTGGAGGATCATGGACAATTATTGGAT-ATGATG-CA---AATAATCA-TAAGTTCAGAACA-TATAAA--GTT-AATA-ATTATGATA-GG-AGAGGTGT---G---GTAGATTTCCAAGAATTAAT--------T-AAATATTTGAGAT-CGTAATCCCAATATTTTTGTAGTATGAAAAC-TCGGGATGACGAAACAC-----------T-------TTTCGA----ACT-CAT-CACTAC-GTGCG-TAT-ATGTT-AGATCTAGGCC-ACTACTAT-GAATATCTATGCCAAAATCT--CATCAAAAACTGAATTTACGTGA-TTGC-ATCCG-TGGAATGTATTC-CTAACTCTGTA--CTCAGAAGAAATG--TAGCAGTCT-ACTTGGTTTTGGTTT-T-TTATGTAGACA--A--G-A---GGTAGTACCGTTTGTCGAATAG-TAGGA-AG-----GGAGATAACTCTAAT-GAGACT-CATGTC-TATAGGTTAAGACCAGAggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|4 : CTTCAG------AACATAACCC---AAAAGTG-GGTATGACCAGTGATC---A----ATAATAAATGACAT-ACGA-TCCAG--T--CCCAGTACCCGCTG---TTAGAT-CAATGTCAG-AAGGCAACGTGC-TAAGCGGC-C-TTAATGTTTTAATA-CA-AGATGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-AATAAATGTTTAA-TA-AATATGATA-GGAAG-----T---GCCTGTTGCTT--CAATAAT-AAT--------T-AA-TAC--GAGAT-CGTAATCCCAATATTTCTGTAG-A-GGAAAC-TCGGGATGAC--AACACA----------TGATGTGATTTTGAACTCGAC-CTT-CAC-AC-GCACTATAT-AT-TT-AGATCTAGGCCTACTAC-ATGAAATATCTATG-C---------TATC---------ATTTACGTGATTTGGAATCCA-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGTAATG-TTAG-AG-CT-ATTT--TTTT--TATGT-
gi|5 : TTTGCGAAACTTTAAAA--TTTCTGACAG-TCATTTTGACCTGC-AGGTTCTCCACTTT-TGTAGATCATTTTT-AAAATTTGTCA------------GTCAT-CAACAAGGCA-TCGTTTCTA---T--GCCATTTTTGATGTGTTGCGTT-TTCGGGATGTTTTTTGTTTGTCATATATACAAAACAATGTATGCTCTC-TTTCGTTCA-TT-AACCCTTTTTCTAGACTTTGGGTAATCGTAACTTGTGAGTCTCCCAAGTCTGTAT-ATCAGAT-AGA-AA--TACAATACAAGcggac
gi|6 : ctatactaactagagattgtaaacatgaaacaagaggccccaatacaaatttgctatataagtaT--------T-AA-TAT--GAGAT-CGTAATCCCAAT-TTTTTTTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T---------TCGA------C-CAT-CAC-AC-GCAC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGAGTGG-TTAG-A
gi|7 : atgagaaatgatatatatttcaataaatgatagacactatccgtATA-CT-AGATGA-TCCA-----ACATCATTTGGAGG-T-----------AT-GGGT-ATGATGTCAG--AATAA-CA-T----------C-------ATGTTTAA-TA-ATTATGATACGA-AA-----T---GCCTGTATATT--CAATAAT-GATTAAAAAAAT-AA-TAT--GAGAT-CGTAATCCCAATATTTATGTTG-A-TGAAGC-GCGGGATGAC--AACACGTGATTTTTAAT-------CTTC------GAC-CTT-CAC-GT-GCGC--TAT-AT-TT-AGATC
gi|8 : --TATTTAATGCACTTTTAAACATGTTTCTGAAAAGGTAAAATAAAC-AGCTTGGTATTGACTT-TTTGACATGTT-CCTCTTCTTTGAAAACCTTTTTGACATGTATAAACTAT-TATT--AATCA------GTTTAATATAC-TAC-AACTCAGGACTTTTA-TGCCATTTTCACCTGTTCCGCTGTGCAGTG
gi|9 : A-TAT--G-GA--CGTAATCCCAAT-TTTTTTTAG-A-GGAAACCTCGGGACGAC--AACAC-----------T---------TCGA------C-CATGCAC-AC-GCACA-TAT-AT-TTTAGATCTAGGC-TACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGAcatgaaagtggtaaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACAAATTTACAACAACCACCAAGCATTAAAATTTTAATGAAGTGCCGTTCGACCCCCCCGTACATTCGGATTTTCTGGAATAGCC
Unaligned ( gi|14 ): ATATGATTTGCAAAGCAGTGAATTGTTCAACTTCTTAGGGAAAAAATGCGCTTCTACTACTTTTTTTTAAATGCTGGATAA
Unaligned ( gi|15 ): TTTAATTGTAAGTGCCGCCGACCCCCCGACATTCATTTCTGGAATTAGGCCCT
Unaligned ( gi|16 ): AAGTGCCTTCCGACCCCCCCATACATTTATTTCTGGAATAGCC
Unaligned ( gi|17 ): CCGCACATTCATTTCTTGGAAGAGCCCTTAGGAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 222 77777777777777 1111 11 1 555555555555 11 22 1 1 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 222 1 1 11 1 1 2222 11 1 222 1 11 11 1 11 2 11 1 11 1 222 11 1 11 6666666666666 2 222222 1 9999999999999999999999999 1 33333333 11 2 111 99999999999999999999999 1 1 1 11 4444444444444 1 222222 4444 2 1 1 2 1 22 11 11 222222 111 1 1 66666666666666666666666666666666666666666666666666666 1 1 1 1 1 111 22222 11111 11 1 11 1 111 111 222222222 11 22222222 6666666666666666666666666666666 11 1 1 2222 1 1 1 11 11 1 22222222222 2222 44444 1 1 22222 1 1 1 11 11 333333 1 1 1 11 1 1 1 1 222
lowQualScore : 5 6 3 6 1 88 333 77777777777777 7777 11 3 666666666666 7 7 44 55 7 3 7 5 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 88 000 5 5 88 7 3 3 4444 00 7 6 2 7 333 3 88 7 7 44 3 6 44 3 88 7 2 88 6 6 3 444 44 1 6 3 7 44 6 1111111111111 3 7 888888 7 3 1111111111111111111111111 2 99999999 2 44 0 000 333 55555555555555555555555 0 0 0 33 6 7 7 2222222222222 3 333333 4444 3 3 3 6 7 3 3 00 88 7 7 7 7 88 888888 2 777 0 0 3 0 6 88888888888888888888888888888888888888888888888888888 2 0 2 0 0 2 0 0 777 3 88 8 8 00000 0 0 0 22222 11 8 8 0 11 0 6 8 0 444 1 222 0 1 66 8 8 8 555555555 6 0 11 8 44444444 6 5 77 5 5 5 5 5 1 5 77 4444444444444444444444444444444 5 5 5 5 99 5 5 5 6 6 6 3 99 7 3 1 6 5 9999 6 6 99 5 88 8 0 0 33 33 6 0 1 44444444444 0000 00000 0 0 55555 2 3 0 0 0 22 33 0 222222 7 7 3 3 5 5 88 6 3 7 3 3 7 3 333 7 6
lowQualScore : . . . . . .. ... .............. .... .. . ............ . . .. .. . . . . . ...................................................................................................... . .. ... . . .. . . . .... .. . . . . ... . .. . . .. . . .. . .. . . .. . . . ... .. . . . . .. . ............. . . ...... . . ......................... . ........ . .. . ... ... ....................... . . . .. . . . ............. . ...... .... . . . . . . . .. .. . . . . .. ...... . ... . . . . . ..................................................... . . . . . . . . ... . .. . . ..... . . . ..... .. . . . .. . . . . ... . ... . . .. . . . ......... . . .. . ........ . . .. . . . . . . . .. ............................... . . . . .. . . . . . . . .. . . . . . .... . . .. . .. . . . .. .. . . . ........... .... ..... . . ..... . . . . . .. .. . ...... . . . . . . .. . . . . . . . ... . .
lowQualScore : 5 7 3 7 0 33 333 00000000000000 3333 00 3 000000000000 3 3 77 33 3 3 3 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 55 555 5 0 33 3 3 3 0000 33 3 7 0 3 333 3 33 3 3 77 3 7 77 7 33 3 0 33 7 7 3 333 33 0 7 3 3 00 7 3333333333333 7 3 000000 3 3 3333333333333333333333333 0 88888888 5 22 0 222 555 22222222222222222222222 0 0 0 88 7 3 3 0000000000000 3 000000 7777 7 3 3 7 3 7 3 77 33 3 3 3 3 33 888888 0 555 0 0 2 8 5 88888888888888888888888888888888888888888888888888888 5 0 5 0 0 5 0 0 555 2 88 0 0 00000 8 8 8 66666 00 0 0 6 00 8 0 0 8 000 0 666 8 0 44 0 0 0 000000000 4 6 00 0 22222222 7 7 99 7 0 7 7 7 4 0 99 0000000000000000000000000000000 7 7 7 7 33 7 7 7 7 7 7 2 22 3 3 0 7 5 3333 7 7 22 5 88 0 0 0 88 88 5 0 0 33333333333 3333 33333 0 0 00000 5 2 0 0 0 55 88 2 000000 3 3 3 7 0 5 00 7 3 3 3 3 3 3 333 3 7
consensus : CACGTGAACCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTGT-----G--------TTTGGT-ACGTTCTGAGGA-TATT-GAAGCT-T-AAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GT-ATTGGCTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTGT-CCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGN-ANGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCAT-CAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTCTTTC-GTTCATTTACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGGT--TTTTTT-TT--AAATA-TAAAAA-T-CAAATATA----ATCAGGA-TGGATTTTA-TGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-GC-CCCC-GT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-NATAAATGNTTAATA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AAT--------T-AA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T-------CTTCGA----GAC-CAT-CAC-AC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AGGAATTTATTC-C-AAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--ATCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCTA-CGC--AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
Reference ( family-447 ) : CACGTGAACCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTGT-----G--------TTTGGT-ACGTTCTGAGGA-TATT-GAAGCT-T-AAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GT-ATTGGCTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTGTTCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGN-ANGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCATTCAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTCTTTC-GTTCATT-ACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGGT--TTTTTT-TT--AAATA-TAAAAA-T-CAAATATATATAATCAGGAATGGATTTTA-TGA-GCAGGGATAATTGGTAAAAGAATTAC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-GC--CCC-GT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-NATAAATGNTTAATA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AAT--------T-AA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T-------CTTCGA----GAC-CAT-CAC-AC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AGGAATTTATTC-C-AAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--ATCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCTA-CGC--AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
gi|1 : CACGTGA-CCCT-TTCAGT-ATGGCGGTAGTG--AAT---TTTT-----G--------TTT----ACGTTTTGAGGA-TATTTGAAGCT-TTAAAATGCCATGT--AAAA-GGTAAATA-CCTTTACTCTGAACAATTAT-GACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATG-ACTTAAGTTGGTTATTTAATGCACTTTCTAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GTTATT---TCATTTGATATGTTCCCTTTCCTTTGAAAACTTTTC---CATGTATAAACTACTTATTTAAACTATTAATCATTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTGT-CCGCTGT--AGTGTTTTGCAAAA--TTAAAAGTTTCCTGCCAGATCATTT-AGCCTGA-ATGTTCTCCACTTTGTGTAGGTCATTTT-CAAAATTT-TTAAAAAAAGTTCAAATCAT-CAAAAAAGTAATCGTTTCTACGGTATGCCATTTTT-ATGT----TGTTATT------------TATATAGTATTTATA-------GTATATGTGCTCTTTTTGTTCATTTACCCTTTTTTCTA-CCTTTGAGTA-TC----------------------TTTTAT-GTCAGAT-AGA-AAGGTACAATACAAAGAAATGT-ATGTGGGT--TTTTTT-TTTTAAATA-TAAAAAAT-CAAATATA----ATCAGGA-TGGATTTTAATGA-GCAGG-ATAAT-GGTAAAAGAAT-ACGCTAAGTAA-TGATTAAAAATTATTCTGGGAATTTTATGTTGATCCCCTCAG------AACATAACCC---AAA-GTG-GATATGATCAGTGATT---GGATTA--A-AAATGATGT-ACGACTCC-GCTCCCC-GT-TCCAC-GGTATTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGAT-AT--ACAA--AT-GGAT-ATGATG-CAGTAGATAACCATTAAGT---ATACAGAATAAATGGCT--TA-ATTATGATA-GG-AG-----T---GTCTGTATATT--CAATAAT-AAT--------T--A-TAT--GAGATACGTAATCCC-ATATTTTTGTAG-A-GGAACT-CCGGGATG----AACAC-----------A-------CTTCGA----GACACAT---C-AC-GCGC--TATAAT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-AAAAATCTG-CATC-AAAACT-AATTTACGTGATTTGCAATCCT-AGGAATTTATTTAC-AAC-CT-TA--CTTAGAAGAAATGTTTAG-AG-CT-ACTT--TTTT--TTTAT-TTGTGGAGACA--ATCGAAAATGAAAGTA-CA-TTG-----TAG-TAGGA-AG-----GGA-AT-ACTCTAAT-GA-ACT-CATATCTTATAGGT--AAGCCAGACCTA-CGCAGAACGATTTTCGACGATGATTGACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTAT-GCTTGAGGTATATTTC-TAACACTTCCTGATACCCACCGAGGTACAAAATTAAAATTCAACCGGCGACCCAC-AAGGTATTGAAATATAAAAATTT---AT-ACAA-CACAACC
gi|10 : TACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTA-TGAAATA-ATAAATTTTCAACAACAACCAc
gi|11 : CACGTGAACCCTGTTCAGTTATGGCGGTGATGGCAATAAATTGT-----GCTCCAGATTTTGGTTACTTTCTGAGGA-TA-------------AAT-GGCATGTTAAAA--GGTAAATACCCTTTACTCTGAACagcataaaatttaaattgaagtgccgtccgacccccccgtacattcatttctggaatagccct
gi|12 : AG-TAGGA-AGCCAAGGGAGGTAACTCTAAC-GA-ACT-CAGAT-----GGGT--AGGCCAGACGTA-T----AATG-----CAACGATGATTAACAAATAT-TACGATTTCGCTTGATTA
gi|2 : atgaaCCTGTTCAGT-ATGGC--TTGTG--AAT---TTGTCCTAGA--------TTGGGT-ACGT--TGAGGAGTATT-AAAGCTGTAAAATTGGCA-G-TAAAAGTGGT-AATA-CC-TTACTCTGAATGA-TATAGACAGT
gi|2 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgaTTTAC-TGACGAAA--TG---TATGTTCCATATACTTAA-TTG--TATTTAATGCACTTCTAAACATGTT-CTGAAAA-GTTAAATAAGGGATCGT-G--ATTGGCTCATTTGATATGTTCCCT--TCTTTGAA--CTTGGC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAA-ATACA-ACAAACTCAG-ACTTTAAT-GCAATTTTCACCTGT-CTGCTGT--AGTGTTT-GC-AAC--TTAAAAGTTTC-TGCCAG-TCATT---GCCTGGCAAGTTCTC-ACTTT-TA---GTCATTTTTCAAAATTTGTTAAG------TCGA-TCATTCAACAAAGTAATCATTC------TATGCCATTTCT-ATGTGTTAT---------------------ATAT-ATTTAT--------GTATATGTGCTCTTTA-GTTCATT-ACCCTTTTCAC---ACTTTGAG--ATT-----------------------TGTAT-GGCAGAT-AGA-AA--TACATAACAAGGAAATGTTATGTGGGTGGTTTTTTGTT--AAATA-TAA----T-CAAATATA----ATCAGGAATGGATTTTA-TAAAGCAGGGATAATTGGTATAAGAATTAC-CTAAGCA--TGAT--AAAATTATTCTGGGA-TTTTATAT--ATCCCCTGAG------AACATAACCA---AAA-GGGAGGTATGATCA-TGATTGATA----A--T-AAATGA-GTGACGA-TCC-GCGCCCC-GTTCCCACAG---TTAGAT-CAAC-TCGG-AAGGCAATGGGC-TAA-CGGC-CCTT---GTTT-AATAACA-AAGTGA-TC-A-----ACATCACT-GGAGGATCAT--ACAA--AT-GGATTATGAT-TCAG--AA--A-CA-TAAGT---AAACA-TATAAATGCTTA-TACATTATGATA-GG-AG-----TTAGGTCTGTATATT--CAATAAT-AAT--------TTAA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGATG-C--AACAC-----------T-------CTC-------GAC-CAT-CAC-ACAGCGC--TAT-AT-TT-AGATCTAG-CCTACTAC-AT-------CTATG-CAA--TCTGGCATCAAAAACTTAATTTGCTTGATTTGCAATCCTTAGGAATT-ATTC----AC-CT-TAACCTTAGAA-AAATG-TTAG-AG-CTTACTC--TTTT--TTTGTGTTGTGAGGACATTGTCG-AAACGAAAGTT-AG-TTAC----TAGGTAGGAGAG-----GGAGATAACTCTAATTGA-ACTTCATATC-TATAGAC--CCGCCAGACCTAACGC--AACGATTTTCGACGATGATGAAC-AATATATACGATTTCGCCGAATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACA--TTCTGATA-CCACC-AGGTACAAAA-T-AAATTTAACCGGCGACCCACAAAGGTATTGAAATA-ATAAATTT---ACAACAACCACAAaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttttttactgacgaaatgtatgttccatatacttaattgtatttaatgcacttctaaacatgttctgaaaagttaaataagggatcgtgattggctcatttgatatgttcccttctttgaacttggccatgtataaactactattaactattaatcgtttaaatacaacaaactcagactttaatgcaattttcacctgtctgctgtagtgtttgcaacttaaaagtttctgccagtcattgcctggcaagttctcacttttagtcatttttcaaaatttgttaagtcgatcattcaacaaagtaatcattctatgccatttctatgtgttatatatatttatgtatatgtgctctttagttcattacccttttcacactttgagatttgtatggcagatagaaatacataacaaggaaatgttatgtgggtggttttttgttaaatataatcaaatataatcaggaatggattttataaagcagggataattggtataagaattacctaagcatgataaaattattctgggattttatatatcccctgagaacataaccaaaagggaggtatgatcatgattgataataaatgagtgacgatccgcgccccgttcccacagttagatcaactcggaaggcaatgggctaacggcccttgtttaataacaaagtgatcaacatcactggaggatcatacaaatggattatgattcagaaacataagtaaacatataaatgcttatacattatgataggagttaggtctgtatattcaataataatttaatatgagatcgtaatcccaatatttttgtagaggaaactcgggatgcaacactctcgaccatcacacagcgctatatttagatctagcctactacatctatgcaatctggcatcaaaaacttaatttgcttgatttgcaatccttaggaattattcaccttaaccttagaaaaatgttagagcttactctttttttgtgttgtgaggacattgtcgaaacgaaagttagttactaggtaggagagggagataactctaattgaacttcatatctatagacccgccagacctaacgcaacgattttcgacgatgatgaacaatatatacgatttcgccgaattattctgcttctatttatcgcttgaggcatatttcttaacattctgataccaccaggtacaaaataaatttaaccggcgacccacaaaggtattgaaataataaatttacaacaaccacaaggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|3 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgacctgttcagtatggcttgtgaatttgtcctagattgggtacgttgaggagtattaaagctgtaaaattggcagtaaaagtggtaataccttactctgaatgatatagacagtaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttt-------GTATAT-TGCTCTTTT-GTGCGTTTACCCTTTTTTCTA-ACTTGGAGTAATT----------------------CTGTATTGTCAGATTAGATAA--TACAATACAAGGAAAT-TTA--------------------GAATAGTAAAAA-TTCAAATATATATAATCAGGA-TGGATTTTA-TGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAACTGAT--AAA-TTAT-CTGGGAATTTTA-AT--ATCCCCTCAGTGTAATAATGTAACCCGAAAAA-GTG-GGTA------ATGATC---A----A--------GATG--ATGA-TC----------------GA-A---TTA-ATACAACGTCGGTGAAGCAATGTGGATAAGCGGCGC-TT---GTTTTAAT--CATAAGTGAGTCCATATCTAT-TCATTTGGAGGATCATGGACAATTATTGGAT-ATGATG-CA---AATAATCA-TAAGTTCAGAACA-TATAAA--GTTAATA-ATTATGATA-GG-AGAGGTGT---G---GTAGATTTCCAAGAATTAAT--------T-AAATATTTGAGAT-CGTAATCCCAATATTTTTGTAGTATGAAAAC-TCGGGATGACGAAACAC-----------T-------TTTCGA----ACT-CAT-CACTAC-GTGCG-TAT-ATGTT-AGATCTAGGCC-ACTACTAT-GAATATCTATGCCAAAATCT--CATCAAAAACTGAATTTACGTGA-TTGC-ATCCG-TGGAATGTATTC-CTAACTCTGTA--CTCAGAAGAAATG--TAGCAGTCT-ACTTGGTTTTGGTTT-T-TTATGTAGACA--A--G-A---GGTAGTACCGTTTGTCGAATAG-TAGGA-AG-----GGAGATAACTCTAAT-GAGACT-CATGTC-TATAGGTTAAGACCAGAggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|4 : CTTCAG------AACATAACCC---AAAAGTG-GGTATGACCAGTGATC---A----ATAATAAATGACAT-ACGA-TCCAGT--CCCAGTACCCGCTG---TTAGAT-CAATGTCAG-AAGGCAACGTGC-TAAGCGGC-C-TTAATGTTTTAATA-CA-AGATGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-AATAAATGTTTAATA-AATATGATA-GGAAG-----T---GCCTGTTGCTT--CAATAAT-AAT--------T-AA-TAC--GAGAT-CGTAATCCCAATATTTCTGTAG-A-GGAAAC-TCGGGATGAC--AACACA----------TGATGTGATTTTGAACTCGAC-CTT-CAC-AC-GCACTATAT-AT-TT-AGATCTAGGCCTACTAC-ATGAAATATCTATG-C---------TATC---------ATTTACGTGATTTGGAATCCA-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGTAATG-TTAG-AG-CT-ATTT--TTTT--TATGT-
gi|5 : TTTGCGAAACTTTAAAA--TTTCTGACAG-TCATTTTGACCTGC-AGGTTCTCCACTTT-TGTAGATCATTTTT-AAAATTTGTCA------------GTCAT-CAACAAGGCA-TCGTTTCTA---T--GCCATTTTTGATGTGTTGCGTT-TTCGGGATGTTTTTTGTTTGTCATATATACAAAACAATGTATGCTCTCTTTC-GTTCATT-AACCCTTTTTCTAGACTTTGGGTAATCGTAACTTGTGAGTCTCCCAAGTCTGTAT-ATCAGAT-AGA-AA--TACAATACAAGcggac
gi|6 : ctatactaactagagattgtaaacatgaaacaagaggccccaatacaaatttgctatataagtaT--------T-AA-TAT--GAGAT-CGTAATCCCAAT-TTTTTTTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T---------TCGA------C-CAT-CAC-AC-GCAC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGAGTGG-TTAG-A
gi|7 : atgagaaatgatatatatttcaataaatgatagacactatccgtATA-CT-AGATGA-TCCA-----ACATCATTTGGAGG-T-----------AT-GGGT-ATGATGTCAG--AATAA-CA-T----------C-------ATGTTTAATA-ATTATGATACGA-AA-----T---GCCTGTATATT--CAATAAT-GATTAAAAAAAT-AA-TAT--GAGAT-CGTAATCCCAATATTTATGTTG-A-TGAAGC-GCGGGATGAC--AACACGTGATTTTTAAT-------CTTC------GAC-CTT-CAC-GT-GCGC--TAT-AT-TT-AGATC
gi|8 : --TATTTAATGCACTTTTAAACATGTTTCTGAAAAGGTAAAATAAAC-AGCTTGGT-ATTGACTT-TTTGACATGTT-CCTCTTCTTTGAAAACCTTTTTGACATGTATAAACTATT-ATT--AATCA------GTTTAATATAC-TACAA-CTCAGGACTTTTA-TGCCATTTTCACCTGTTCCGCTGTGCAGTG
gi|9 : A-TAT--G-GA--CGTAATCCCAAT-TTTTTTTAG-A-GGAAACCTCGGGACGAC--AACAC-----------T---------TCGA------C-CATGCAC-AC-GCACA-TAT-AT-TTTAGATCTAGGC-TACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGAcatgaaagtggtaaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACAAATTTACAACAACCACCAAGCATTAAAATTTTAATGAAGTGCCGTTCGACCCCCCCGTACATTCGGATTTTCTGGAATAGCC
Unaligned ( gi|14 ): ATATGATTTGCAAAGCAGTGAATTGTTCAACTTCTTAGGGAAAAAATGCGCTTCTACTACTTTTTTTTAAATGCTGGATAA
Unaligned ( gi|15 ): TTTAATTGTAAGTGCCGCCGACCCCCCGACATTCATTTCTGGAATTAGGCCCT
Unaligned ( gi|16 ): AAGTGCCTTCCGACCCCCCCATACATTTATTTCTGGAATAGCC
Unaligned ( gi|17 ): CCGCACATTCATTTCTTGGAAGAGCCCTTAGGAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 222 77777777777777 1111 11 1 555555555555 11 22 1 1 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 222 1 1 11 1 1 2222 11 1 222 1 11 11 1 11 1 11 1 11 1 222 11 1 6666666666666 1 222222 1 9999999999999999999999999 1 33333333 1 111 11 99999999999999999999999 1 1 1 11 11 444444444444 111 1 2222 1 1 1 1 1 22 11 11 222222 111 1 1 5555555555555 1111 1 5555555555555555555555 1 1 1 1 1 111 22222 11111 11 1 11 1 111 111 222222222 11 22222222 6666666666666666666666666666666 11 1 1 2222 1 1 1 11 11 1 22222222222 2222 44444 1 1 22222 1 1 1 11 11 333333 1 1 1 11 1 1 1 1 222
lowQualScore : 5 6 3 6 1 88 333 77777777777777 7777 11 3 666666666666 7 7 44 55 7 3 7 5 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 88 000 5 5 88 7 3 3 4444 00 7 6 2 7 333 3 88 7 7 44 3 6 44 3 88 7 2 88 6 6 3 444 44 1 6 3 7 7 6 6 1111111111111 3 7 888888 7 3 1111111111111111111111111 2 99999999 2 0 4 9 3 000 22 55555555555555555555555 0 0 0 33 44 7 333333333333 777 7 3 8888 3 3 3 6 7 3 3 00 88 7 7 7 7 88 888888 2 777 0 0 3 0 6 8888888888888 7777 0 2222222222222222222222 2 0 2 0 0 2 0 0 777 3 88 8 8 00000 0 0 0 22222 11 8 8 0 11 0 6 8 0 444 1 222 0 1 66 8 8 8 555555555 6 0 11 8 44444444 6 5 77 5 5 5 5 5 1 5 77 4444444444444444444444444444444 5 5 5 5 99 5 5 5 6 6 6 3 99 7 3 1 6 5 9999 6 6 99 5 88 8 0 0 33 33 6 0 1 44444444444 0000 00000 0 0 55555 2 3 0 0 0 22 33 0 222222 7 7 3 3 5 5 88 6 3 7 3 3 7 3 333 7 6
lowQualScore : . . . . . .. ... .............. .... .. . ............ . . .. .. . . . . . ...................................................................................................... . .. ... . . .. . . . .... .. . . . . ... . .. . . .. . . .. . .. . . .. . . . ... .. . . . . . . . ............. . . ...... . . ......................... . ........ . . . . . ... .. ....................... . . . .. .. . ............ ... . . .... . . . . . . . .. .. . . . . .. ...... . ... . . . . . ............. .... . ...................... . . . . . . . . ... . .. . . ..... . . . ..... .. . . . .. . . . . ... . ... . . .. . . . ......... . . .. . ........ . . .. . . . . . . . .. ............................... . . . . .. . . . . . . . .. . . . . . .... . . .. . .. . . . .. .. . . . ........... .... ..... . . ..... . . . . . .. .. . ...... . . . . . . .. . . . . . . . ... . .
lowQualScore : 5 7 3 7 0 33 333 00000000000000 3333 00 3 000000000000 3 3 77 33 3 3 3 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 55 555 5 0 33 3 3 3 0000 33 3 7 0 3 333 3 33 3 3 77 3 7 77 3 33 3 0 33 7 7 3 333 33 0 7 3 3 3 7 7 3333333333333 3 3 000000 3 3 3333333333333333333333333 0 88888888 5 0 2 8 2 222 55 22222222222222222222222 0 0 0 88 00 3 000000000000 777 3 3 3333 3 3 3 7 3 3 3 77 33 3 3 3 3 33 888888 0 555 0 0 2 8 5 0000000000000 8888 0 0000000000000000000000 5 0 5 0 0 5 0 0 555 2 88 0 0 00000 8 8 8 66666 00 0 0 6 00 8 0 0 8 000 0 666 8 0 44 0 0 0 000000000 4 6 00 0 22222222 7 7 99 7 0 7 7 7 4 0 99 0000000000000000000000000000000 7 7 7 7 33 7 7 7 7 7 7 2 22 3 3 0 7 5 3333 7 7 22 5 88 0 0 0 88 88 5 0 0 33333333333 3333 33333 0 0 00000 5 2 0 0 0 55 88 2 000000 3 3 3 7 0 5 00 7 3 3 3 3 3 3 333 3 7
consensus : CACGTGAACCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTGT-----G--------TTTGGT-ACGTTCTGAGGA-TATT-GAAGCT-T-AAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GT-ATTGGCTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGN-ANGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCAT-CAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTC-TTTCGTTCATTTACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGG--T--TTTTTT-TTAAATA-T-AAAAAT-CAAATATA----ATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-GC-CCCCGT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-NATAAATGNTTAATA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AAT--------T-AA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T-------CTTCGA----GAC-CAT-CAC-AC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AGGAATTTATTC-C-AAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--ATCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCTA-CGC--AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
Reference ( family-447 ) : CACGTGAACCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTGT-----G--------TTTGGT-ACGTTCTGAGGA-TATT-GAAGCT-T-AAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GT-ATTGGCTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGN-ANGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCAT-CAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTC-TTTCGTTCATTTACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGG--T--TTTTTT-TTAAATA-T-AAAAAT-CAAATATA----ATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-GC-CCCCGT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-NATAAATGNTTAATA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AAT--------T-AA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T-------CTTCGA----GAC-CAT-CAC-AC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AGGAATTTATTC-C-AAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--ATCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCTA-CGC--AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
gi|1 : CACGTGA-CCCT-TTCAGT-ATGGCGGTAGTG--AAT---TTTT-----G--------TTT----ACGTTTTGAGGA-TATTTGAAGCT-TTAAAATGCCATGT--AAAA-GGTAAATA-CCTTTACTCTGAACAATTAT-GACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATG-ACTTAAGTTGGTTATTTAATGCACTTTCTAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GTTATT---TCATTTGATATGTTCCCTTTCCTTTGAAAACTTTTC---CATGTATAAACTACTTATTTAAACTATTAATCATTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCAAAA--TTAAAAGTTTCCTGCCAGATCATTT-AGCCTGA-ATGTTCTCCACTTTGTGTAGGTCA-TTTTCAAAATTT-TTAAAAAAAGTTCAAATCAT-CAAAAAAGTAATCGTTTCTACGGTATGCCATTTTT-ATGT----TGTTATT------------TATATAGTATTTATA-------GTATATGTGCTCTTTTTGTTCATTTACCCTTTTTTCTA-CCTTTGAGT-ATC----------------------TTTTAT-GTCAGAT-AGA-AAGGTACAATACAAAGAAATG-TATGTGGGTTT--TTTTTT-TTAAATA-TAAAAAAT-CAAATATA----ATCAGGA-TGGATTTTAATGA-GCA-GGATAA-TGGTAAAAGAAT-ACGCTAAGTAA-TGATTAAAAATTATTCTGGGAATTTTATGTTGATCCCCTCAG------AACATAACCC---AAA-GTG-GATATGATCAGTGATT---GGATTA--A-AAATGATGT-ACGACTCC-GCTCCCCGT-TCCAC-GGTATTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGAT-AT--ACAA--AT-GGAT-ATGATG-CAGTAGATAACCATTAAGT---ATACAGAATAAATGGCT--TA-ATTATGATA-GG-AG-----T---GTCTGTATATT--CAATAAT-AAT--------T--A-TAT--GAGATACGTAATCCC-ATATTTTTGTAG-A-GGAACT-CCGGGATG----AACAC-----------A-------CTTCGA----GACACAT---C-AC-GCGC--TATAAT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-AAAAATCTG-CATC-AAAACT-AATTTACGTGATTTGCAATCCT-AGGAATTTATTTAC-AAC-CT-TA--CTTAGAAGAAATGTTTAG-AG-CT-ACTT--TTTT--TTTAT-TTGTGGAGACA--ATCGAAAATGAAAGTA-CA-TTG-----TAG-TAGGA-AG-----GGA-AT-ACTCTAAT-GA-ACT-CATATCTTATAGGT--AAGCCAGACCTA-CGCAGAACGATTTTCGACGATGATTGACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTAT-GCTTGAGGTATATTTC-TAACACTTCCTGATACCCACCGAGGTACAAAATTAAAATTCAACCGGCGACCCAC-AAGGTATTGAAATATAAAAATTT---AT-ACAA-CACAACC
gi|10 : TACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTA-TGAAATA-ATAAATTTTCAACAACAACCAc
gi|11 : CACGTGAACCCTGTTCAGTTATGGCGGTGATGGCAATAAATTGT-----GCTCCAGATTTTGGTTACTTTCTGAGGA-TA-------------AAT-GGCATGTTAAAA--GGTAAATACCCTTTACTCTGAACagcataaaatttaaattgaagtgccgtccgacccccccgtacattcatttctggaatagccct
gi|12 : AG-TAGGA-AGCCAAGGGAGGTAACTCTAAC-GA-ACT-CAGAT-----GGGT--AGGCCAGACGTA-T----AATG-----CAACGATGATTAACAAATAT-TACGATTTCGCTTGATTA
gi|2 : atgaaCCTGTTCAGT-ATGGC--TTGTG--AAT---TTGTCCTAGA--------TTGGGT-ACGT--TGAGGAGTATT-AAAGCTGTAAAATTGGCA-G-TAAAAGTGGT-AATA-CC-TTACTCTGAATGA-TATAGACAGT
gi|2 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgaTTTAC-TGACGAAA--TG---TATGTTCCATATACTTAA-TTG--TATTTAATGCACTTCTAAACATGTT-CTGAAAA-GTTAAATAAGGGATCGT-G--ATTGGCTCATTTGATATGTTCCCT--TCTTTGAA--CTTGGC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAA-ATACA-ACAAACTCAG-ACTTTAAT-GCAATTTTCACCTG-TCTGCTGT--AGTGTTT-GC-AAC--TTAAAAGTTTC-TGCCAG-TCATT---GCCTGGCAAGTTCTC-ACTTT-TA---GTCATTTTTCAAAATTTGTTAAG------TCGA-TCATTCAACAAAGTAATCATTC------TATGCCATTTCT-ATGTGTTAT---------------------ATAT-ATTTAT--------GTATATGTGCTC-TTTAGTTCATT-ACCCTTTTCAC---ACTTTGAG--ATT-----------------------TGTAT-GGCAGAT-AGA-AA--TACATAACAAGGAAATGTTATGTGGG--TGGTTTTTTGTTAAATA-T-AA---T-CAAATATA----ATCAGGAATGGATTTT-ATAAAGCAGGGATAATTGGTATAAGAATTAC-CTAAGCA--TGAT--AAAATTATTCTGGGA-TTTTATAT--ATCCCCTGAG------AACATAACCA---AAA-GGGAGGTATGATCA-TGATTGATA----A--T-AAATGA-GTGACGA-TCC-GCGCCCCGTTCCCACAG---TTAGAT-CAAC-TCGG-AAGGCAATGGGC-TAA-CGGC-CCTT---GTTT-AATAACA-AAGTGA-TC-A-----ACATCACT-GGAGGATCAT--ACAA--AT-GGATTATGAT-TCAG--AA--A-CA-TAAGT---AAACA-TATAAATGCTTA-TACATTATGATA-GG-AG-----TTAGGTCTGTATATT--CAATAAT-AAT--------TTAA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGATG-C--AACAC-----------T-------CTC-------GAC-CAT-CAC-ACAGCGC--TAT-AT-TT-AGATCTAG-CCTACTAC-AT-------CTATG-CAA--TCTGGCATCAAAAACTTAATTTGCTTGATTTGCAATCCTTAGGAATT-ATTC----AC-CT-TAACCTTAGAA-AAATG-TTAG-AG-CTTACTC--TTTT--TTTGTGTTGTGAGGACATTGTCG-AAACGAAAGTT-AG-TTAC----TAGGTAGGAGAG-----GGAGATAACTCTAATTGA-ACTTCATATC-TATAGAC--CCGCCAGACCTAACGC--AACGATTTTCGACGATGATGAAC-AATATATACGATTTCGCCGAATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACA--TTCTGATA-CCACC-AGGTACAAAA-T-AAATTTAACCGGCGACCCACAAAGGTATTGAAATA-ATAAATTT---ACAACAACCACAAaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttttttactgacgaaatgtatgttccatatacttaattgtatttaatgcacttctaaacatgttctgaaaagttaaataagggatcgtgattggctcatttgatatgttcccttctttgaacttggccatgtataaactactattaactattaatcgtttaaatacaacaaactcagactttaatgcaattttcacctgtctgctgtagtgtttgcaacttaaaagtttctgccagtcattgcctggcaagttctcacttttagtcatttttcaaaatttgttaagtcgatcattcaacaaagtaatcattctatgccatttctatgtgttatatatatttatgtatatgtgctctttagttcattacccttttcacactttgagatttgtatggcagatagaaatacataacaaggaaatgttatgtgggtggttttttgttaaatataatcaaatataatcaggaatggattttataaagcagggataattggtataagaattacctaagcatgataaaattattctgggattttatatatcccctgagaacataaccaaaagggaggtatgatcatgattgataataaatgagtgacgatccgcgccccgttcccacagttagatcaactcggaaggcaatgggctaacggcccttgtttaataacaaagtgatcaacatcactggaggatcatacaaatggattatgattcagaaacataagtaaacatataaatgcttatacattatgataggagttaggtctgtatattcaataataatttaatatgagatcgtaatcccaatatttttgtagaggaaactcgggatgcaacactctcgaccatcacacagcgctatatttagatctagcctactacatctatgcaatctggcatcaaaaacttaatttgcttgatttgcaatccttaggaattattcaccttaaccttagaaaaatgttagagcttactctttttttgtgttgtgaggacattgtcgaaacgaaagttagttactaggtaggagagggagataactctaattgaacttcatatctatagacccgccagacctaacgcaacgattttcgacgatgatgaacaatatatacgatttcgccgaattattctgcttctatttatcgcttgaggcatatttcttaacattctgataccaccaggtacaaaataaatttaaccggcgacccacaaaggtattgaaataataaatttacaacaaccacaaggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|3 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgacctgttcagtatggcttgtgaatttgtcctagattgggtacgttgaggagtattaaagctgtaaaattggcagtaaaagtggtaataccttactctgaatgatatagacagtaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttt-------GTATAT-TGCTC-TTTTGTGCGTTTACCCTTTTTTCTA-ACTTGGAGTAATT----------------------CTGTATTGTCAGATTAGATAA--TACAATACAAGGAAAT-TTA--------------------GAATAGT-AAAAATTCAAATATATATAATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAACTGAT--AAA-TTAT-CTGGGAATTTTA-AT--ATCCCCTCAGTGTAATAATGTAACCCGAAAAA-GTG-GGTA------ATGATC---A----A--------GATG--ATGA-TC---------------GA-A---TTA-ATACAACGTCGGTGAAGCAATGTGGATAAGCGGCGC-TT---GTTTTAAT--CATAAGTGAGTCCATATCTAT-TCATTTGGAGGATCATGGACAATTATTGGAT-ATGATG-CA---AATAATCA-TAAGTTCAGAACA-TATAAA--GTTAATA-ATTATGATA-GG-AGAGGTGT---G---GTAGATTTCCAAGAATTAAT--------T-AAATATTTGAGAT-CGTAATCCCAATATTTTTGTAGTATGAAAAC-TCGGGATGACGAAACAC-----------T-------TTTCGA----ACT-CAT-CACTAC-GTGCG-TAT-ATGTT-AGATCTAGGCC-ACTACTAT-GAATATCTATGCCAAAATCT--CATCAAAAACTGAATTTACGTGA-TTGC-ATCCG-TGGAATGTATTC-CTAACTCTGTA--CTCAGAAGAAATG--TAGCAGTCT-ACTTGGTTTTGGTTT-T-TTATGTAGACA--A--G-A---GGTAGTACCGTTTGTCGAATAG-TAGGA-AG-----GGAGATAACTCTAAT-GAGACT-CATGTC-TATAGGTTAAGACCAGAggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|4 : CTTCAG------AACATAACCC---AAAAGTG-GGTATGACCAGTGATC---A----ATAATAAATGACAT-ACGA-TCCAGT-CCCAGTACCCGCTG---TTAGAT-CAATGTCAG-AAGGCAACGTGC-TAAGCGGC-C-TTAATGTTTTAATA-CA-AGATGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-AATAAATGTTTAATA-AATATGATA-GGAAG-----T---GCCTGTTGCTT--CAATAAT-AAT--------T-AA-TAC--GAGAT-CGTAATCCCAATATTTCTGTAG-A-GGAAAC-TCGGGATGAC--AACACA----------TGATGTGATTTTGAACTCGAC-CTT-CAC-AC-GCACTATAT-AT-TT-AGATCTAGGCCTACTAC-ATGAAATATCTATG-C---------TATC---------ATTTACGTGATTTGGAATCCA-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGTAATG-TTAG-AG-CT-ATTT--TTTT--TATGT-
gi|5 : TTTGCGAAACTTTAAAA--TTTCTGACAG-TCATTTTGACCTGC-AGGTTCTCCACTTT-TGTAGATCATTTTT-AAAATTTGTCA------------GTCAT-CAACAAGGCA-TCGTTTCTA---T--GCCATTTTTGATGTGTTGCGTT-TTCGGGATGTTTTTTGTTTGTCATATATACAAAACAATGTATGCTCTC-TTTCGTTCATTAACCC-TTTTTCTAGACTTTGGGTAATCGTAACTTGTGAGTCTCCCAAGTCTGTAT-ATCAGAT-AGA-AA--TACAATACAAGcggac
gi|6 : ctatactaactagagattgtaaacatgaaacaagaggccccaatacaaatttgctatataagtaT--------T-AA-TAT--GAGAT-CGTAATCCCAAT-TTTTTTTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T---------TCGA------C-CAT-CAC-AC-GCAC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGAGTGG-TTAG-A
gi|7 : atgagaaatgatatatatttcaataaatgatagacactatccgtATA-CT-AGATGA-TCCA-----ACATCATTTGGAGG-T-----------AT-GGGT-ATGATGTCAG--AATAA-CA-T----------C-------ATGTTTAATA-ATTATGATACGA-AA-----T---GCCTGTATATT--CAATAAT-GATTAAAAAAAT-AA-TAT--GAGAT-CGTAATCCCAATATTTATGTTG-A-TGAAGC-GCGGGATGAC--AACACGTGATTTTTAAT-------CTTC------GAC-CTT-CAC-GT-GCGC--TAT-AT-TT-AGATC
gi|8 : --TATTTAATGCACTTTTAAACATGTTTCTGAAAAGGTAAAATAAAC-AGCTTGGT-ATTGACTT-TTTGACATGTT-CCTCTTCTTTGAAAACCTTTTTGACATGTATAAACTATT-ATT--AATCA------GTTTAATATAC-TACAA-CTCAGGACTTTTA-TGCCATTTTCACCTGTTCCGCTGTGCAGTG
gi|9 : A-TAT--G-GA--CGTAATCCCAAT-TTTTTTTAG-A-GGAAACCTCGGGACGAC--AACAC-----------T---------TCGA------C-CATGCAC-AC-GCACA-TAT-AT-TTTAGATCTAGGC-TACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGAcatgaaagtggtaaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACAAATTTACAACAACCACCAAGCATTAAAATTTTAATGAAGTGCCGTTCGACCCCCCCGTACATTCGGATTTTCTGGAATAGCC
Unaligned ( gi|14 ): ATATGATTTGCAAAGCAGTGAATTGTTCAACTTCTTAGGGAAAAAATGCGCTTCTACTACTTTTTTTTAAATGCTGGATAA
Unaligned ( gi|15 ): TTTAATTGTAAGTGCCGCCGACCCCCCGACATTCATTTCTGGAATTAGGCCCT
Unaligned ( gi|16 ): AAGTGCCTTCCGACCCCCCCATACATTTATTTCTGGAATAGCC
Unaligned ( gi|17 ): CCGCACATTCATTTCTTGGAAGAGCCCTTAGGAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 222 77777777777777 1111 11 1 555555555555 11 22 1 1 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 222 1 1 11 1 1 2222 11 1 222 1 11 11 1 11 1 11 1 11 1 222 11 1 6666666666666 1 222222 1 9999999999999999999999999 1 33333333 1 111 11 99999999999999999999999 1 1 1 11 11 444444444444 111 1 2222 1 1 1 1 1 22 11 11 222222 111 1 1 5555555555555 1111 1 5555555555555555555555 1 1 1 1 1 111 22222 11111 11 1 11 1 111 111 222222222 11 22222222 6666666666666666666666666666666 11 1 1 2222 1 1 1 11 11 1 22222222222 2222 44444 1 1 22222 1 1 1 11 11 333333 1 1 1 11 1 1 1 1 222
lowQualScore : 5 6 3 6 1 88 333 77777777777777 7777 11 3 666666666666 7 7 44 55 7 3 7 5 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 88 000 5 5 88 7 3 3 4444 00 7 6 2 7 333 3 88 7 7 44 3 6 44 3 88 7 2 88 6 6 3 444 44 1 6 3 7 7 6 6 1111111111111 3 7 888888 7 3 1111111111111111111111111 2 99999999 2 0 4 9 3 000 22 55555555555555555555555 0 0 0 33 44 7 333333333333 777 7 3 8888 3 3 3 6 7 3 3 00 88 7 7 7 7 88 888888 2 777 0 0 3 0 6 8888888888888 7777 0 2222222222222222222222 2 0 2 0 0 2 0 0 777 3 88 8 8 00000 0 0 0 22222 11 8 8 0 11 0 6 8 0 444 1 222 0 1 66 8 8 8 555555555 6 0 11 8 44444444 6 5 77 5 5 5 5 5 1 5 77 4444444444444444444444444444444 5 5 5 5 99 5 5 5 6 6 6 3 99 7 3 1 6 5 9999 6 6 99 5 88 8 0 0 33 33 6 0 1 44444444444 0000 00000 0 0 55555 2 3 0 0 0 22 33 0 222222 7 7 3 3 5 5 88 6 3 7 3 3 7 3 333 7 6
lowQualScore : . . . . . .. ... .............. .... .. . ............ . . .. .. . . . . . ...................................................................................................... . .. ... . . .. . . . .... .. . . . . ... . .. . . .. . . .. . .. . . .. . . . ... .. . . . . . . . ............. . . ...... . . ......................... . ........ . . . . . ... .. ....................... . . . .. .. . ............ ... . . .... . . . . . . . .. .. . . . . .. ...... . ... . . . . . ............. .... . ...................... . . . . . . . . ... . .. . . ..... . . . ..... .. . . . .. . . . . ... . ... . . .. . . . ......... . . .. . ........ . . .. . . . . . . . .. ............................... . . . . .. . . . . . . . .. . . . . . .... . . .. . .. . . . .. .. . . . ........... .... ..... . . ..... . . . . . .. .. . ...... . . . . . . .. . . . . . . . ... . .
lowQualScore : 5 7 3 7 0 33 333 00000000000000 3333 00 3 000000000000 3 3 77 33 3 3 3 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 55 555 5 0 33 3 3 3 0000 33 3 7 0 3 333 3 33 3 3 77 3 7 77 3 33 3 0 33 7 7 3 333 33 0 7 3 3 3 7 7 3333333333333 3 3 000000 3 3 3333333333333333333333333 0 88888888 5 0 2 8 2 222 55 22222222222222222222222 0 0 0 88 00 3 000000000000 777 3 3 3333 3 3 3 7 3 3 3 77 33 3 3 3 3 33 888888 0 555 0 0 2 8 5 0000000000000 8888 0 0000000000000000000000 5 0 5 0 0 5 0 0 555 2 88 0 0 00000 8 8 8 66666 00 0 0 6 00 8 0 0 8 000 0 666 8 0 44 0 0 0 000000000 4 6 00 0 22222222 7 7 99 7 0 7 7 7 4 0 99 0000000000000000000000000000000 7 7 7 7 33 7 7 7 7 7 7 2 22 3 3 0 7 5 3333 7 7 22 5 88 0 0 0 88 88 5 0 0 33333333333 3333 33333 0 0 00000 5 2 0 0 0 55 88 2 000000 3 3 3 7 0 5 00 7 3 3 3 3 3 3 333 3 7
consensus : CACGTGAACCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTGT-----G--------TTTGGT-ACGTTCTGAGGA-TATT-GAAGCT-T-AAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GT-ATTGGCTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGN-ANGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCAT-CAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTC-TTTCGTTCATTTACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGG--T--TTTTTT-TTAAATA-T-AAAAAT-CAAATATA----ATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-GC-CCCCGT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-NATAAATGNTTAATA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AAT--------T-AA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T-------CTTCGA----GAC-CAT-CAC-AC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AGGAATTTATTC-C-AAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--ATCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCTA-CGC--AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
Reference ( family-447 ) : CACGTGAACCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTGT-----G--------TTTGGT-ACGTTCTGAGGA-TATT-GAAGCT-T-AAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GT-ATTGGCTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGN-ANGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCAT-CAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTC-TTTCGTTCATTTACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGG--T--TTTTTT-TTAAATA-T-AAAAAT-CAAATATA----ATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-GC-CCCCGT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-NATAAATGNTTAATA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AAT--------T-AA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T-------CTTCGA----GAC-CAT-CAC-AC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AGGAATTTATTC-C-AAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--ATCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCTA-CGC--AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
gi|1 : CACGTGA-CCCT-TTCAGT-ATGGCGGTAGTG--AAT---TTTT-----G--------TTT----ACGTTTTGAGGA-TATTTGAAGCT-TTAAAATGCCATGT--AAAA-GGTAAATA-CCTTTACTCTGAACAATTAT-GACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATG-ACTTAAGTTGGTTATTTAATGCACTTTCTAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GTTATT---TCATTTGATATGTTCCCTTTCCTTTGAAAACTTTTC---CATGTATAAACTACTTATTTAAACTATTAATCATTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCAAAA--TTAAAAGTTTCCTGCCAGATCATTT-AGCCTGA-ATGTTCTCCACTTTGTGTAGGTCA-TTTTCAAAATTT-TTAAAAAAAGTTCAAATCAT-CAAAAAAGTAATCGTTTCTACGGTATGCCATTTTT-ATGT----TGTTATT------------TATATAGTATTTATA-------GTATATGTGCTCTTTTTGTTCATTTACCCTTTTTTCTA-CCTTTGAGT-ATC----------------------TTTTAT-GTCAGAT-AGA-AAGGTACAATACAAAGAAATG-TATGTGGGTTT--TTTTTT-TTAAATA-TAAAAAAT-CAAATATA----ATCAGGA-TGGATTTTAATGA-GCA-GGATAA-TGGTAAAAGAAT-ACGCTAAGTAA-TGATTAAAAATTATTCTGGGAATTTTATGTTGATCCCCTCAG------AACATAACCC---AAA-GTG-GATATGATCAGTGATT---GGATTA--A-AAATGATGT-ACGACTCC-GCTCCCCGT-TCCAC-GGTATTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGAT-AT--ACAA--AT-GGAT-ATGATG-CAGTAGATAACCATTAAGT---ATACAGAATAAATGGCT--TA-ATTATGATA-GG-AG-----T---GTCTGTATATT--CAATAAT-AAT--------T--A-TAT--GAGATACGTAATCCC-ATATTTTTGTAG-A-GGAACT-CCGGGATG----AACAC-----------A-------CTTCGA----GACACAT---C-AC-GCGC--TATAAT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-AAAAATCTG-CATC-AAAACT-AATTTACGTGATTTGCAATCCT-AGGAATTTATTTAC-AAC-CT-TA--CTTAGAAGAAATGTTTAG-AG-CT-ACTT--TTTT--TTTAT-TTGTGGAGACA--ATCGAAAATGAAAGTA-CA-TTG-----TAG-TAGGA-AG-----GGA-AT-ACTCTAAT-GA-ACT-CATATCTTATAGGT--AAGCCAGACCTA-CGCAGAACGATTTTCGACGATGATTGACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTAT-GCTTGAGGTATATTTC-TAACACTTCCTGATACCCACCGAGGTACAAAATTAAAATTCAACCGGCGACCCAC-AAGGTATTGAAATATAAAAATTT---AT-ACAA-CACAACC
gi|10 : TACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTA-TGAAATA-ATAAATTTTCAACAACAACCAc
gi|11 : CACGTGAACCCTGTTCAGTTATGGCGGTGATGGCAATAAATTGT-----GCTCCAGATTTTGGTTACTTTCTGAGGA-TA-------------AAT-GGCATGTTAAAA--GGTAAATACCCTTTACTCTGAACagcataaaatttaaattgaagtgccgtccgacccccccgtacattcatttctggaatagccct
gi|12 : AG-TAGGA-AGCCAAGGGAGGTAACTCTAAC-GA-ACT-CAGAT-----GGGT--AGGCCAGACGTA-T----AATG-----CAACGATGATTAACAAATAT-TACGATTTCGCTTGATTA
gi|2 : atgaaCCTGTTCAGT-ATGGC--TTGTG--AAT---TTGTCCTAGA--------TTGGGT-ACGT--TGAGGAGTATT-AAAGCTGTAAAATTGGCA-G-TAAAAGTGGT-AATA-CC-TTACTCTGAATGA-TATAGACAGT
gi|2 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgaTTTAC-TGACGAAA--TG---TATGTTCCATATACTTAA-TTG--TATTTAATGCACTTCTAAACATGTT-CTGAAAA-GTTAAATAAGGGATCGT-G--ATTGGCTCATTTGATATGTTCCCT--TCTTTGAA--CTTGGC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAA-ATACA-ACAAACTCAG-ACTTTAAT-GCAATTTTCACCTG-TCTGCTGT--AGTGTTT-GC-AAC--TTAAAAGTTTC-TGCCAG-TCATT---GCCTGGCAAGTTCTC-ACTTT-TA---GTCATTTTTCAAAATTTGTTAAG------TCGA-TCATTCAACAAAGTAATCATTC------TATGCCATTTCT-ATGTGTTAT---------------------ATAT-ATTTAT--------GTATATGTGCTC-TTTAGTTCATT-ACCCTTTTCAC---ACTTTGAG--ATT-----------------------TGTAT-GGCAGAT-AGA-AA--TACATAACAAGGAAATGTTATGTGGG--TGGTTTTTTGTTAAATA-T-AA---T-CAAATATA----ATCAGGAATGGATTTT-ATAAAGCAGGGATAATTGGTATAAGAATTAC-CTAAGCA--TGAT--AAAATTATTCTGGGA-TTTTATAT--ATCCCCTGAG------AACATAACCA---AAA-GGGAGGTATGATCA-TGATTGATA----A--T-AAATGA-GTGACGA-TCC-GCGCCCCGTTCCCACAG---TTAGAT-CAAC-TCGG-AAGGCAATGGGC-TAA-CGGC-CCTT---GTTT-AATAACA-AAGTGA-TC-A-----ACATCACT-GGAGGATCAT--ACAA--AT-GGATTATGAT-TCAG--AA--A-CA-TAAGT---AAACA-TATAAATGCTTA-TACATTATGATA-GG-AG-----TTAGGTCTGTATATT--CAATAAT-AAT--------TTAA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGATG-C--AACAC-----------T-------CTC-------GAC-CAT-CAC-ACAGCGC--TAT-AT-TT-AGATCTAG-CCTACTAC-AT-------CTATG-CAA--TCTGGCATCAAAAACTTAATTTGCTTGATTTGCAATCCTTAGGAATT-ATTC----AC-CT-TAACCTTAGAA-AAATG-TTAG-AG-CTTACTC--TTTT--TTTGTGTTGTGAGGACATTGTCG-AAACGAAAGTT-AG-TTAC----TAGGTAGGAGAG-----GGAGATAACTCTAATTGA-ACTTCATATC-TATAGAC--CCGCCAGACCTAACGC--AACGATTTTCGACGATGATGAAC-AATATATACGATTTCGCCGAATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACA--TTCTGATA-CCACC-AGGTACAAAA-T-AAATTTAACCGGCGACCCACAAAGGTATTGAAATA-ATAAATTT---ACAACAACCACAAaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttttttactgacgaaatgtatgttccatatacttaattgtatttaatgcacttctaaacatgttctgaaaagttaaataagggatcgtgattggctcatttgatatgttcccttctttgaacttggccatgtataaactactattaactattaatcgtttaaatacaacaaactcagactttaatgcaattttcacctgtctgctgtagtgtttgcaacttaaaagtttctgccagtcattgcctggcaagttctcacttttagtcatttttcaaaatttgttaagtcgatcattcaacaaagtaatcattctatgccatttctatgtgttatatatatttatgtatatgtgctctttagttcattacccttttcacactttgagatttgtatggcagatagaaatacataacaaggaaatgttatgtgggtggttttttgttaaatataatcaaatataatcaggaatggattttataaagcagggataattggtataagaattacctaagcatgataaaattattctgggattttatatatcccctgagaacataaccaaaagggaggtatgatcatgattgataataaatgagtgacgatccgcgccccgttcccacagttagatcaactcggaaggcaatgggctaacggcccttgtttaataacaaagtgatcaacatcactggaggatcatacaaatggattatgattcagaaacataagtaaacatataaatgcttatacattatgataggagttaggtctgtatattcaataataatttaatatgagatcgtaatcccaatatttttgtagaggaaactcgggatgcaacactctcgaccatcacacagcgctatatttagatctagcctactacatctatgcaatctggcatcaaaaacttaatttgcttgatttgcaatccttaggaattattcaccttaaccttagaaaaatgttagagcttactctttttttgtgttgtgaggacattgtcgaaacgaaagttagttactaggtaggagagggagataactctaattgaacttcatatctatagacccgccagacctaacgcaacgattttcgacgatgatgaacaatatatacgatttcgccgaattattctgcttctatttatcgcttgaggcatatttcttaacattctgataccaccaggtacaaaataaatttaaccggcgacccacaaaggtattgaaataataaatttacaacaaccacaaggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|3 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgacctgttcagtatggcttgtgaatttgtcctagattgggtacgttgaggagtattaaagctgtaaaattggcagtaaaagtggtaataccttactctgaatgatatagacagtaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttt-------GTATAT-TGCTC-TTTTGTGCGTTTACCCTTTTTTCTA-ACTTGGAGTAATT----------------------CTGTATTGTCAGATTAGATAA--TACAATACAAGGAAAT-TTA--------------------GAATAGT-AAAAATTCAAATATATATAATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAACTGAT--AAA-TTAT-CTGGGAATTTTA-AT--ATCCCCTCAGTGTAATAATGTAACCCGAAAAA-GTG-GGTA------ATGATC---A----A--------GATG--ATGA-TC---------------GA-A---TTA-ATACAACGTCGGTGAAGCAATGTGGATAAGCGGCGC-TT---GTTTTAAT--CATAAGTGAGTCCATATCTAT-TCATTTGGAGGATCATGGACAATTATTGGAT-ATGATG-CA---AATAATCA-TAAGTTCAGAACA-TATAAA--GTTAATA-ATTATGATA-GG-AGAGGTGT---G---GTAGATTTCCAAGAATTAAT--------T-AAATATTTGAGAT-CGTAATCCCAATATTTTTGTAGTATGAAAAC-TCGGGATGACGAAACAC-----------T-------TTTCGA----ACT-CAT-CACTAC-GTGCG-TAT-ATGTT-AGATCTAGGCC-ACTACTAT-GAATATCTATGCCAAAATCT--CATCAAAAACTGAATTTACGTGA-TTGC-ATCCG-TGGAATGTATTC-CTAACTCTGTA--CTCAGAAGAAATG--TAGCAGTCT-ACTTGGTTTTGGTTT-T-TTATGTAGACA--A--G-A---GGTAGTACCGTTTGTCGAATAG-TAGGA-AG-----GGAGATAACTCTAAT-GAGACT-CATGTC-TATAGGTTAAGACCAGAggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|4 : CTTCAG------AACATAACCC---AAAAGTG-GGTATGACCAGTGATC---A----ATAATAAATGACAT-ACGA-TCCAGT-CCCAGTACCCGCTG---TTAGAT-CAATGTCAG-AAGGCAACGTGC-TAAGCGGC-C-TTAATGTTTTAATA-CA-AGATGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-AATAAATGTTTAATA-AATATGATA-GGAAG-----T---GCCTGTTGCTT--CAATAAT-AAT--------T-AA-TAC--GAGAT-CGTAATCCCAATATTTCTGTAG-A-GGAAAC-TCGGGATGAC--AACACA----------TGATGTGATTTTGAACTCGAC-CTT-CAC-AC-GCACTATAT-AT-TT-AGATCTAGGCCTACTAC-ATGAAATATCTATG-C---------TATC---------ATTTACGTGATTTGGAATCCA-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGTAATG-TTAG-AG-CT-ATTT--TTTT--TATGT-
gi|5 : TTTGCGAAACTTTAAAA--TTTCTGACAG-TCATTTTGACCTGC-AGGTTCTCCACTTT-TGTAGATCATTTTT-AAAATTTGTCA------------GTCAT-CAACAAGGCA-TCGTTTCTA---T--GCCATTTTTGATGTGTTGCGTT-TTCGGGATGTTTTTTGTTTGTCATATATACAAAACAATGTATGCTCTC-TTTCGTTCATTAACCC-TTTTTCTAGACTTTGGGTAATCGTAACTTGTGAGTCTCCCAAGTCTGTAT-ATCAGAT-AGA-AA--TACAATACAAGcggac
gi|6 : ctatactaactagagattgtaaacatgaaacaagaggccccaatacaaatttgctatataagtaT--------T-AA-TAT--GAGAT-CGTAATCCCAAT-TTTTTTTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T---------TCGA------C-CAT-CAC-AC-GCAC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGAGTGG-TTAG-A
gi|7 : atgagaaatgatatatatttcaataaatgatagacactatccgtATA-CT-AGATGA-TCCA-----ACATCATTTGGAGG-T-----------AT-GGGT-ATGATGTCAG--AATAA-CA-T----------C-------ATGTTTAATA-ATTATGATACGA-AA-----T---GCCTGTATATT--CAATAAT-GATTAAAAAAAT-AA-TAT--GAGAT-CGTAATCCCAATATTTATGTTG-A-TGAAGC-GCGGGATGAC--AACACGTGATTTTTAAT-------CTTC------GAC-CTT-CAC-GT-GCGC--TAT-AT-TT-AGATC
gi|8 : --TATTTAATGCACTTTTAAACATGTTTCTGAAAAGGTAAAATAAAC-AGCTTGGT-ATTGACTT-TTTGACATGTT-CCTCTTCTTTGAAAACCTTTTTGACATGTATAAACTATT-ATT--AATCA------GTTTAATATAC-TACAA-CTCAGGACTTTTA-TGCCATTTTCACCTGTTCCGCTGTGCAGTG
gi|9 : A-TAT--G-GA--CGTAATCCCAAT-TTTTTTTAG-A-GGAAACCTCGGGACGAC--AACAC-----------T---------TCGA------C-CATGCAC-AC-GCACA-TAT-AT-TTTAGATCTAGGC-TACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACTTGATTTGCAATCCT-AGGAA-TTATT--C-AAC-CT-TA--C-TAGAAGAcatgaaagtggtaaaa
blockSeqs : A G T G G GC AAA GCTCCAGAT GGTT TC G TTAAAGCTGTA T T TT GT A C T . A . . . T . . T G G GGT GG A C C A TGA . . T T A A G T T GC T G CT G C . TTG GC A C . T T C G AGTCGA T A CTA A G GTTGCGTTTTCGGGATGTTTTTTG C ACAAAACA G . A T T TAG TA GTAACTTGTGAGTCTCCCAAGTC T T T . GT T TGGTTTTTTG GT A T TATA A . A G T T . AC . A T A T . TGTAAT A GAA A A T A GATAAT GTG . CGCGCCCCGTTCCCACAG G A G T A G G C AAT T AA T G TATCT CATGG TT T T T . T . TCA A AT C AA C C A AGGTGT T TC T TAAAAAAA T A TT . A T T C T A GA ATGATGTGATTTTGAACTCGA . G T A TA . G T T G C A GG A T T T T CCT T G AC T T C T T GG GG G G A TTGTCGAAAC CCGT TCGAA G G CCAAG G A T G T C TA ACGC A A A T C T . C . T . A T . TCA A C
blockSeqs : G . . T . . CCTAGA GGT . . . . . T . . . . . . . . G GA . . . . . . . . . T . . T . . . . . . . . . C G . . . T . G G . . . . . GTTAT . . G . T A T TA TA C . . . . T . . T . . . . . . G T . . . . . . . . . . G . . . T G AATAAT CAT . CAGTCCCAGTACCCGCTG G . G . . G . . . T A . . . CAT . . . T . . . . A AT G AA . . . TTAG C . . . . . . . A . . . T A . GTGATTTTTAATCTTCGA . . . . G . . . . G . A G A G G . T C . . . T T . . . . . G . T AGA AG C . . . G A . . . C . T . . . G . . . . . . . . A C
blockSeqs : . . C . . . . . . . . . . A . . . . . AA TG . GAA . . . . . . . . . . A . . . CAT . . . T . . . . A AA T AA . . . T C . . . . . . . A . . . T A . TTTTCGAAC . . . . A . . . . G . A G A . G . . C . . . . T . . . . . . . . . . G A . . . . .
blockSeqs : . . . . . . . . . . . . . . . T A . . . T . . . . . . . . A . . . C A . TCTCGA . . . . . . . . . . . . . A . T . . C . . . . . .
blockSeqs : . . . . . . . . . T A . TTCGA . . . . . . . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . C . . TTCGA . . . . . . . .
blockSeqCons : CAT** ** AT* AA TGATTTTTCGA******************** G* C*** T*
originalCons : CACGTGAACCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTGT-----G--------TTTGGT-ACGTTCTGAGGA-TATT-GAAGCT-T-AAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GT-ATTGGCTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGN-ANGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCAT-CAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTC-TTTCGTTCATTTACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGG--T--TTTTTT-TTAAATA-T-AAAAAT-CAAATATA----ATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-GC-CCCCGT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACA-NATAAATGNTTAATA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AAT--------T-AA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACAC-----------T-------CTTCGA----GAC-CAT-CAC-AC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AGGAATTTATTC-C-AAC-CT-TA--CTTAGAAGAAATG-TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--ATCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCTA-CGC--AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
finalCons : CACGTGAACCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTGT-----G--------TTTGGT-ACGTTCTGAGGA-TATT-GAAGCT-T-AAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GT-ATTGGCTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGN-ANGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCAT-CAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTC-TTTCGTTCATTTACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGG--T--TTTTTT-TTAAATA-T-AAAAAT-CAAATATA----ATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-GC-CCCCGT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACAT-ATAAATGNTTAATA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AAT--------T-AA-TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGAC--AACACTGATTTTTCGA--------------------C-CAT-CAC-AC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AGGAATTTATTC---AAC-CT-TA--CTTAGAAGAAATGT-TAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--ATCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCTA-CGC--AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACAAATTTACAACAACCACCAAGCATTAAAATTTTAATGAAGTGCCGTTCGACCCCCCCGTACATTCGGATTTTCTGGAATAGCC
Unaligned ( gi|14 ): ATATGATTTGCAAAGCAGTGAATTGTTCAACTTCTTAGGGAAAAAATGCGCTTCTACTACTTTTTTTTAAATGCTGGATAA
Unaligned ( gi|15 ): TTTAATTGTAAGTGCCGCCGACCCCCCGACATTCATTTCTGGAATTAGGCCCT
Unaligned ( gi|16 ): AAGTGCCTTCCGACCCCCCCATACATTTATTTCTGGAATAGCC
Unaligned ( gi|17 ): CCGCACATTCATTTCTTGGAAGAGCCCTTAGGAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 222 77777777777777 1111 11 1 555555555555 11 22 1 1 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 222 1 1 11 1 1 2222 11 1 222 1 11 11 1 11 1 11 1 11 1 222 11 1 6666666666666 1 222222 1 9999999999999999999999999 1 33333333 1 111 11 99999999999999999999999 1 1 1 11 11 444444444444 111 1 2222 1 1 1 1 1 22 11 11 222222 111 1 1 5555555555555 1111 1 5555555555555555555555 1 1 1 1 1 111 22222 11 11 1 11 1 111 222222222 11 22222222 88888888888888888888888 11 1 11 1 1 111 11 11 1 22222222222 2222 44444 1 1 22222 1 1 1 11 11 333333 1 1 1 11 1 1 1 1 222
lowQualScore : 5 6 3 6 1 88 333 77777777777777 7777 11 3 666666666666 7 7 44 55 7 3 7 5 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 88 000 5 5 88 7 3 3 4444 00 7 6 2 7 333 3 88 7 7 44 3 6 44 3 88 7 2 88 6 6 3 444 44 1 6 3 7 7 6 6 1111111111111 3 7 888888 7 3 1111111111111111111111111 2 99999999 2 0 4 9 3 000 22 55555555555555555555555 0 0 0 33 44 7 333333333333 777 7 3 8888 3 3 3 6 7 3 3 00 88 7 7 7 7 88 888888 2 777 0 0 3 0 6 8888888888888 7777 0 2222222222222222222222 2 0 2 0 0 2 0 0 777 3 88 8 8 00000 0 0 0 5 11 11 8 8 0 11 0 6 8 0 444 1 999 5 1 66 8 8 8 555555555 6 0 11 8 6 66666666 77 5 5 5 5 5 1 5 55555555555555555555555 77 5 5 5 5 99 5 5 5 6 6 6 3 99 7 3 1 00 5 2 5 77 77 5 5 77 2 77 888 6 8 8 11 11 6 0 1 44444444444 0000 00000 0 0 55555 2 3 0 0 0 22 33 0 222222 7 7 3 3 5 5 88 6 3 7 3 3 7 3 333 7 6
lowQualScore : . . . . . .. ... .............. .... .. . ............ . . .. .. . . . . . ...................................................................................................... . .. ... . . .. . . . .... .. . . . . ... . .. . . .. . . .. . .. . . .. . . . ... .. . . . . . . . ............. . . ...... . . ......................... . ........ . . . . . ... .. ....................... . . . .. .. . ............ ... . . .... . . . . . . . .. .. . . . . .. ...... . ... . . . . . ............. .... . ...................... . . . . . . . . ... . .. . . ..... . . . . .. .. . . . .. . . . . ... . ... . . .. . . . ......... . . .. . . ........ .. . . . . . . . ....................... .. . . . . .. . . . . . . . .. . . . .. . . . .. .. . . .. . .. ... . . . .. .. . . . ........... .... ..... . . ..... . . . . . .. .. . ...... . . . . . . .. . . . . . . . ... . .
lowQualScore : 5 7 3 7 0 33 333 00000000000000 3333 00 3 000000000000 3 3 77 33 3 3 3 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 55 555 5 0 33 3 3 3 0000 33 3 7 0 3 333 3 33 3 3 77 3 7 77 3 33 3 0 33 7 7 3 333 33 0 7 3 3 3 7 7 3333333333333 3 3 000000 3 3 3333333333333333333333333 0 88888888 5 0 2 8 2 222 55 22222222222222222222222 0 0 0 88 00 3 000000000000 777 3 3 3333 3 3 3 7 3 3 3 77 33 3 3 3 3 33 888888 0 555 0 0 2 8 5 0000000000000 8888 0 0000000000000000000000 5 0 5 0 0 5 0 0 555 2 88 0 0 00000 8 8 8 0 00 00 0 0 6 00 8 0 0 8 000 0 888 6 0 44 0 0 0 000000000 4 6 00 0 7 44444444 99 7 0 7 7 7 4 0 99999999999999999999999 99 7 7 7 7 33 7 7 7 7 7 7 2 22 3 3 0 99 7 0 0 99 99 7 7 99 0 99 333 7 0 0 00 00 5 0 0 33333333333 3333 33333 0 0 00000 5 2 0 0 0 55 88 2 000000 3 3 3 7 0 5 00 7 3 3 3 3 3 3 333 3 7
consensus : CACGTGAACCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTGT-----G--------TTTGGT-ACGTTCTGAGGA-TATT-GAAGCT-T-AAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GT-ATTGGCTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGN-ANGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCAT-CAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTC-TTTCGTTCATTTACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGG--T--TTTTTT-TTAAATA-T-AAAAAT-CAAATATA----ATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-GC-CCCCGT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACAT-ATAAATGNTTAATA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AATT-AA--------TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGACAACAC------T-ACTT------T----TCGA--C-CAT-CAC-AC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AG-GAATTTATT--C--AAC-CT-TA--CTTAG--AAGAAATG---TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--ATCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCTA-CGC--AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
Reference ( family-447 ) : CACGTGAACCCTGTTCAGT-ATGGCGGTNGTG--AAT---TTGT-----G--------TTTGGT-ACGTTCTGAGGA-TATT-GAAGCT-T-AAATTGGCATGTTAAAAG-GGTAAATA-CCTTTACTCTGAACGATTATAGACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATGTACTTAAGTTG--TATTTAATGCACTTTTAAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GT-ATTGGCTCATTTGATATGTTCCCTCTTCTTTGAAAACTTTTC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCGAAA--TTAAAAGTTTCCTGCCAG-TCATTT-GGCCTGN-ANGTTCTCCACTTT-TGTAGGTCATTTTTCAAAATTTGTTAAG------TCGAGTCAT-CAACAAAGTAATCGTTTCTA---TATGCCATTTTT-ATGTGTTGTGTT-TT------------TGTATATCATTTATA-------GTATATGTGCTC-TTTCGTTCATTTACCCTTTTTTCTA-ACTTTGAGTAATC----------------------CTGTAT-GTCAGAT-AGA-AA--TACAATACAAGGAAATGTTATGTGGG--T--TTTTTT-TTAAATA-T-AAAAAT-CAAATATA----ATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAA-TGAT--AAAATTATTCTGGGAATTTTATAT--ATCCCCTCAG------AACGTAACCC---AAA-GTG-GGTATGATCAGTGATC---A----A--A-AAATGACGT-ACGA-TCC-GC-CCCCGT-CCCGC-G---TTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACAT-ATAAATGNTTAATA-ATTATGATA-GG-AG-----T---GCCTGTATATT--CAATAAT-AATT-AA--------TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGACGACAACAC------TGATTT------T----TCGA--C-CAT-CAC-AC-GCGC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACNTGATTTGCAATCCT-AG-GAATTTATT--C--AAC-CT-TA--CTTAG--AAGAAATG---TTAG-AG-CT-ACTT--TTTT--TTTGT-TTGTGNAGACA--ATCG-AAACGAAAGTA-CG-TTGC----TAG-TAGGA-AG-----GGAGATAACTCTAAT-GA-ACT-CATATC-TATAGGT--AGGCCAGACCTA-CGC--AACGATTTTCGACGATGATTAACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACACTTCCTGATACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTATTGAAATA-ATAAATTT---ACAACAACCACAACC
gi|1 : CACGTGA-CCCT-TTCAGT-ATGGCGGTAGTG--AAT---TTTT-----G--------TTT----ACGTTTTGAGGA-TATTTGAAGCT-TTAAAATGCCATGT--AAAA-GGTAAATA-CCTTTACTCTGAACAATTAT-GACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACGTGACGAAAAATGGGTTATGTTCCATG-ACTTAAGTTGGTTATTTAATGCACTTTCTAACATGTTTCTGAAAA-GTAAAATAAGG-ATCTT-GTTATT---TCATTTGATATGTTCCCTTTCCTTTGAAAACTTTTC---CATGTATAAACTACTTATTTAAACTATTAATCATTTAATATACATACAA-CTCAGGACTTTAATTGCCATTTTCACCTG-TCCGCTGT--AGTGTTTTGCAAAA--TTAAAAGTTTCCTGCCAGATCATTT-AGCCTGA-ATGTTCTCCACTTTGTGTAGGTCA-TTTTCAAAATTT-TTAAAAAAAGTTCAAATCAT-CAAAAAAGTAATCGTTTCTACGGTATGCCATTTTT-ATGT----TGTTATT------------TATATAGTATTTATA-------GTATATGTGCTCTTTTTGTTCATTTACCCTTTTTTCTA-CCTTTGAGT-ATC----------------------TTTTAT-GTCAGAT-AGA-AAGGTACAATACAAAGAAATG-TATGTGGGTTT--TTTTTT-TTAAATA-TAAAAAAT-CAAATATA----ATCAGGA-TGGATTTTAATGA-GCA-GGATAA-TGGTAAAAGAAT-ACGCTAAGTAA-TGATTAAAAATTATTCTGGGAATTTTATGTTGATCCCCTCAG------AACATAACCC---AAA-GTG-GATATGATCAGTGATT---GGATTA--A-AAATGATGT-ACGACTCC-GCTCCCCGT-TCCAC-GGTATTAGAT-CAACGTCGG-AAGGCAATGTGC-TAAGCGGC-C-TT---GTTTTAATA-CA-AAGTGA-TCCA-----ACATCATTTGGAGGAT-AT--ACAA--AT-GGAT-ATGATG-CAGTAGATAACCATTAAGT---ATACAGAATAAATGGCT--TA-ATTATGATA-GG-AG-----T---GTCTGTATATT--CAATAAT-AATT--A--------TAT--GAGATACGTAATCCC-ATATTTTTGTAG-A-GGAACT-CCGGGATG--AACAC--------ACTT------C----GAGA--CACAT---C-AC-GCGC--TATAAT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-AAAAATCTG-CATC-AAAACT-AATTTACGTGATTTGCAATCCT-AG-GAATTTATTTAC--AAC-CT-TA--CTTAG--AAGAAATGT--TTAG-AG-CT-ACTT--TTTT--TTTAT-TTGTGGAGACA--ATCGAAAATGAAAGTA-CA-TTG-----TAG-TAGGA-AG-----GGA-AT-ACTCTAAT-GA-ACT-CATATCTTATAGGT--AAGCCAGACCTA-CGCAGAACGATTTTCGACGATGATTGACAAATAT-TACGATTTCGCTCGATTATTCTGCTTCTATTTAT-GCTTGAGGTATATTTC-TAACACTTCCTGATACCCACCGAGGTACAAAATTAAAATTCAACCGGCGACCCAC-AAGGTATTGAAATATAAAAATTT---AT-ACAA-CACAACC
gi|10 : TACCCACC-AGGTACAAAATT-AAATTTAACCGGCGACCCAC-AAGGTA-TGAAATA-ATAAATTTTCAACAACAACCAc
gi|11 : CACGTGAACCCTGTTCAGTTATGGCGGTGATGGCAATAAATTGT-----GCTCCAGATTTTGGTTACTTTCTGAGGA-TA-------------AAT-GGCATGTTAAAA--GGTAAATACCCTTTACTCTGAACagcataaaatttaaattgaagtgccgtccgacccccccgtacattcatttctggaatagccct
gi|12 : AG-TAGGA-AGCCAAGGGAGGTAACTCTAAC-GA-ACT-CAGAT-----GGGT--AGGCCAGACGTA-T----AATG-----CAACGATGATTAACAAATAT-TACGATTTCGCTTGATTA
gi|14 : atgaaATATGATTTGCAAAGC--AGTGAATT-GTT--C--AAC-TT-----CTTAGGGAAAAAATGCGCTTCT-A--CT-ACTT--TTTT--TT
gi|2 : CCTGTTCAGT-ATGGC--TTGTG--AAT---TTGTCCTAGA--------TTGGGT-ACGT--TGAGGAGTATT-AAAGCTGTAAAATTGGCA-G-TAAAAGTGGT-AATA-CC-TTACTCTGAATGA-TATAGACAGTaaatgctggataa
gi|2 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgaTTTAC-TGACGAAA--TG---TATGTTCCATATACTTAA-TTG--TATTTAATGCACTTCTAAACATGTT-CTGAAAA-GTTAAATAAGGGATCGT-G--ATTGGCTCATTTGATATGTTCCCT--TCTTTGAA--CTTGGC---CATGTATAAACTACT-ATT--AACTATTAATCGTTTAA-ATACA-ACAAACTCAG-ACTTTAAT-GCAATTTTCACCTG-TCTGCTGT--AGTGTTT-GC-AAC--TTAAAAGTTTC-TGCCAG-TCATT---GCCTGGCAAGTTCTC-ACTTT-TA---GTCATTTTTCAAAATTTGTTAAG------TCGA-TCATTCAACAAAGTAATCATTC------TATGCCATTTCT-ATGTGTTAT---------------------ATAT-ATTTAT--------GTATATGTGCTC-TTTAGTTCATT-ACCCTTTTCAC---ACTTTGAG--ATT-----------------------TGTAT-GGCAGAT-AGA-AA--TACATAACAAGGAAATGTTATGTGGG--TGGTTTTTTGTTAAATA-T-AA---T-CAAATATA----ATCAGGAATGGATTTT-ATAAAGCAGGGATAATTGGTATAAGAATTAC-CTAAGCA--TGAT--AAAATTATTCTGGGA-TTTTATAT--ATCCCCTGAG------AACATAACCA---AAA-GGGAGGTATGATCA-TGATTGATA----A--T-AAATGA-GTGACGA-TCC-GCGCCCCGTTCCCACAG---TTAGAT-CAAC-TCGG-AAGGCAATGGGC-TAA-CGGC-CCTT---GTTT-AATAACA-AAGTGA-TC-A-----ACATCACT-GGAGGATCAT--ACAA--AT-GGATTATGAT-TCAG--AA--A-CA-TAAGT---AAACAT-ATAAATGCTTA-TACATTATGATA-GG-AG-----TTAGGTCTGTATATT--CAATAAT-AATTTAA--------TAT--GAGAT-CGTAATCCCAATATTTTTGTAG-A-GGAAAC-TCGGGATG-CAACAC------T-----------C----TCGA--C-CAT-CAC-ACAGCGC--TAT-AT-TT-AGATCTAG-CCTACTAC-AT-------CTATG-CAA--TCTGGCATCAAAAACTTAATTTGCTTGATTTGCAATCCTTAG-GAATT-ATT--C--A-C-CT-TAACCTTAG--AA-AAATG---TTAG-AG-CTTACTC--TTTT--TTTGTGTTGTGAGGACATTGTCG-AAACGAAAGTT-AG-TTAC----TAGGTAGGAGAG-----GGAGATAACTCTAATTGA-ACTTCATATC-TATAGAC--CCGCCAGACCTAACGC--AACGATTTTCGACGATGATGAAC-AATATATACGATTTCGCCGAATTATTCTGCTTCTATTTATCGCTTGAGGCATATTTCTTAACA--TTCTGATA-CCACC-AGGTACAAAA-T-AAATTTAACCGGCGACCCACAAAGGTATTGAAATA-ATAAATTT---ACAACAACCACAAaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttttttactgacgaaatgtatgttccatatacttaattgtatttaatgcacttctaaacatgttctgaaaagttaaataagggatcgtgattggctcatttgatatgttcccttctttgaacttggccatgtataaactactattaactattaatcgtttaaatacaacaaactcagactttaatgcaattttcacctgtctgctgtagtgtttgcaacttaaaagtttctgccagtcattgcctggcaagttctcacttttagtcatttttcaaaatttgttaagtcgatcattcaacaaagtaatcattctatgccatttctatgtgttatatatatttatgtatatgtgctctttagttcattacccttttcacactttgagatttgtatggcagatagaaatacataacaaggaaatgttatgtgggtggttttttgttaaatataatcaaatataatcaggaatggattttataaagcagggataattggtataagaattacctaagcatgataaaattattctgggattttatatatcccctgagaacataaccaaaagggaggtatgatcatgattgataataaatgagtgacgatccgcgccccgttcccacagttagatcaactcggaaggcaatgggctaacggcccttgtttaataacaaagtgatcaacatcactggaggatcatacaaatggattatgattcagaaacataagtaaacatataaatgcttatacattatgataggagttaggtctgtatattcaataataatttaatatgagatcgtaatcccaatatttttgtagaggaaactcgggatgcaacactctcgaccatcacacagcgctatatttagatctagcctactacatctatgcaatctggcatcaaaaacttaatttgcttgatttgcaatccttaggaattattcaccttaaccttagaaaaatgttagagcttactctttttttgtgttgtgaggacattgtcgaaacgaaagttagttactaggtaggagagggagataactctaattgaacttcatatctatagacccgccagacctaacgcaacgattttcgacgatgatgaacaatatatacgatttcgccgaattattctgcttctatttatcgcttgaggcatatttcttaacattctgataccaccaggtacaaaataaatttaaccggcgacccacaaaggtattgaaataataaatttacaacaaccacaaggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|3 : agaatcattttaaatgtgacgttgtttttaaagttagtcacgacctgttcagtatggcttgtgaatttgtcctagattgggtacgttgaggagtattaaagctgtaaaattggcagtaaaagtggtaataccttactctgaatgatatagacagtaccaacaaaataaagtggtttcctgtttcataccagaaaaaataggtaggtgagatagggataattttttttttactttttttt-------GTATAT-TGCTC-TTTTGTGCGTTTACCCTTTTTTCTA-ACTTGGAGTAATT----------------------CTGTATTGTCAGATTAGATAA--TACAATACAAGGAAAT-TTA--------------------GAATAGT-AAAAATTCAAATATATATAATCAGGA-TGGATTTT-ATGA-GCAGGGATAATTGGTAAAAGAAT-AC-CTAAGTAACTGAT--AAA-TTAT-CTGGGAATTTTA-AT--ATCCCCTCAGTGTAATAATGTAACCCGAAAAA-GTG-GGTA------ATGATC---A----A--------GATG--ATGA-TC---------------GA-A---TTA-ATACAACGTCGGTGAAGCAATGTGGATAAGCGGCGC-TT---GTTTTAAT--CATAAGTGAGTCCATATCTAT-TCATTTGGAGGATCATGGACAATTATTGGAT-ATGATG-CA---AATAATCA-TAAGTTCAGAACAT-ATAAA--GTTAATA-ATTATGATA-GG-AGAGGTGT---G---GTAGATTTCCAAGAATTAATT-AAA-------TATTTGAGAT-CGTAATCCCAATATTTTTGTAGTATGAAAAC-TCGGGATGACGAAAC--------ACTT------T----TCGAACT-CAT-CACTAC-GTGCG-TAT-ATGTT-AGATCTAGGCC-ACTACTAT-GAATATCTATGCCAAAATCT--CATCAAAAACTGAATTTACGTGA-TTGC-ATCCG-TG-GAATGTATT--CCTAACTCTGTA--CTCAG--AAGAAATG----TAGCAGTCT-ACTTGGTTTTGGTTT-T-TTATGTAGACA--A--G-A---GGTAGTACCGTTTGTCGAATAG-TAGGA-AG-----GGAGATAACTCTAAT-GAGACT-CATGTC-TATAGGTTAAGACCAGAggctaaatatttaatttgagtccgtccgacccccgtaacattcatttc
gi|4 : CTTCAG------AACATAACCC---AAAAGTG-GGTATGACCAGTGATC---A----ATAATAAATGACAT-ACGA-TCCAGT-CCCAGTACCCGCTG---TTAGAT-CAATGTCAG-AAGGCAACGTGC-TAAGCGGC-C-TTAATGTTTTAATA-CA-AGATGA-TCCA-----ACATCATTTGGAGGATCAT--ACAA--AT-GGAT-ATGATGTCAG--AATAA-CA-TAAGT---AAACAA-ATAAATGTTTAATA-AATATGATA-GGAAG-----T---GCCTGTTGCTT--CAATAAT-AATT-AA--------TAC--GAGAT-CGTAATCCCAATATTTCTGTAG-A-GGAAAC-TCGGGATGACAACACATGATGTGATTT------TGAACTCGA--C-CTT-CAC-AC-GCACTATAT-AT-TT-AGATCTAGGCCTACTAC-ATGAAATATCTATG-C---------TATC---------ATTTACGTGATTTGGAATCCA-AG-GAA-TTATT--C--AAC-CT-TA--C-TAG--AAGTAATG---TTAG-AG-CT-ATTT--TTTT--TATGT-
gi|5 : TTTGCGAAACTTTAAAA--TTTCTGACAG-TCATTTTGACCTGC-AGGTTCTCCACTTT-TGTAGATCATTTTT-AAAATTTGTCA------------GTCAT-CAACAAGGCA-TCGTTTCTA---T--GCCATTTTTGATGTGTTGCGTT-TTCGGGATGTTTTTTGTTTGTCATATATACAAAACAATGTATGCTCTC-TTTCGTTCATTAACCC-TTTTTCTAGACTTTGGGTAATCGTAACTTGTGAGTCTCCCAAGTCTGTAT-ATCAGAT-AGA-AA--TACAATACAAGcggac
gi|6 : ctatactaactagagattgtaaacatgaaacaagaggccccaatacaaatttgctatataagtaTT-AA--------TAT--GAGAT-CGTAATCCCAAT-TTTTTTTAG-A-GGAAAC-TCGGGACGACAACAC------T----------------TCGA--C-CAT-CAC-AC-GCAC--TAT-AT-TT-AGATCTAGGCCTACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACTTGATTTGCAATCCT-AG-GAA-TTATT--C--AAC-CT-TA--C-TAG--AAGAGTGG---TTAG-A
gi|7 : atgagaaatgatatatatttcaataaatgatagacactatccgtATA-CT-AGATGA-TCCA-----ACATCATTTGGAGG----T--A------T-GGGT-ATGATGTCAG--AATAA-CA-T----------CAT-------GTTTAATA-ATTATGATACGA-AA-----T---GCCTGTATATT--CAATAAT-GATT-AAAAAAATAATAT--GAGAT-CGTAATCCCAATATTTATGTTG-A-TGAAGC-GCGGGATGACAACACG-----TGATTTTTAATCT----TCGA--C-CTT-CAC-GT-GCGC--TAT-AT-TT-AGATC
gi|8 : --TATTTAATGCACTTTTAAACATGTTTCTGAAAAGGTAAAATAAAC-AGCTTGGT-ATTGACTT-TTTGACATGTT-CCTCTTCTTTGAAAACCTTTTTGACATGTATAAACTATT-ATT--AATCA------GTTTAATATAC-TACAA-CTCAGGACTTTTA-TGCCATTTTCACCTGTTCCGCTGTGCAGTG
gi|9 : A--------TAT--G-GA--CGTAATCCCAAT-TTTTTTTAG-A-GGAAACCTCGGGACGACAACAC------T----------------TCGA--C-CATGCAC-AC-GCACA-TAT-AT-TTTAGATCTAGGC-TACTAC-ATGGAATATCTATG-CAAAATCTG-CATCAAAAACT-AATTTACTTGATTTGCAATCCT-AG-GAA-TTATT--C--AAC-CT-TA--C-TAG--AAGAcatgaaagtggtaaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACAAATTTACAACAACCACCAAGCATTAAAATTTTAATGAAGTGCCGTTCGACCCCCCCGTACATTCGGATTTTCTGGAATAGCC
Unaligned ( gi|15 ): TTTAATTGTAAGTGCCGCCGACCCCCCGACATTCATTTCTGGAATTAGGCCCT
Unaligned ( gi|16 ): AAGTGCCTTCCGACCCCCCCATACATTTATTTCTGGAATAGCC
Unaligned ( gi|17 ): CCGCACATTCATTTCTTGGAAGAGCCCTTAGGAAA