lowQualScore : 1 555555555555555555 1 1 222222222 111111 222222 22222222 44444444444444444444444444444444 2222222222222 11 2222 3333333333333333333333333333333333333333333333333
lowQualScore : 6 8 3 3 444444444444444444 4 0 6 5 333333333 2 2 111111 55555 444444 1 1 1 44444444 555 22222222222222222222222222222222 6 7777777777777 2 8 00 1111 666 4444 8888888888888888888888888888888888888888888888888 777 3 5 1 1
lowQualScore : . . . . .................. . . . . ......... . . ...... ..... ...... . . . ........ ... ................................ . ............. . . .. .... ... .... ................................................. ... . . . .
lowQualScore : 0 0 0 3 333333333333333333 4 7 9 0 999999999 5 0 555555 00000 444444 8 8 8 44444444 444 11111111111111111111111111111111 7 1111111111111 4 4 99 3333 222 7777 1111111111111111111111111111111111111111111111111 222 8 2 6 4
consensus : TGTGAGTG-TGTG-GTGT----AACAGTG--CTGG-C-TTGTAGACACTCTACAGGCCACATTTTNT-GCTCG-A-TTGATTT-GATACTT------CA-----CA--T---GTAG-CTTT-GTT-A-TCA--AAAGAGG-AAGAACCC---TAN-------TG-ATTTTGGGGT--T--AAAAAGGTCAAA--GTTNAA----GGTC-ACTATGGGAC--TTC--ATAGA----A----AA------A------GC-TTG---T---AGACA---N-T--TA-NTGCAAGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
Reference ( gi|9 ) : TGCGAGTG-TATG-GTGT----AACAGTGC-CTGG-C-TTGTAGACTCTCCACAGGGCACATTTTGT-ACTCT-A-TTGATTT-GATACTT------CA-----CA--A---GTAG-CTTT-GTT-A-TCA--TAAGAGG-AAGAACCC---GAA-------TG-ATTCTGGGGT--T--AAAAAGGTCAAA--GCTAAA----GGTC-ATTACAGGAC--ATT--ATAGA----A----AT------A------GG-TTG---T---AGACA---G-T--TG-GTGCAAGGGGGTATACCTTGCCTTGCGGAGCTCCTGTTA
gi|7 : TGTGAGAGATGTA-GTGTCCGAAACAGT--------C-TTGT---CTGTCTGCAGGCCACTTTTTTTTGCTCA-G-TTGAGTC-AATACAT------TA-----CA--T---GTAG-CTTT-GTT-A-TCA--AATAAGG-AAGAATCC---TTT-------TG-ATTTTTGGGT--C---CAAAGGTC---------AA----GGTC-A-TATAGGACTTCTT--ACAGA----AGCTTAT------ATTTACTGA-TTG---T---GTACA-----T------TACAAGGG---ATGTCCTACTTTTTAGAGCTTTTGTT
gi|1 : tcatgcaattcatGTG-TGTG-G-------AAAAGTACACTGGAC-TTATTGACAATTTACAAACCACATTTTG---CTTG-A-TTGATAG-GATACTT------TA-----CATGATT-GTAG-CTTT-GTT-A-TCA--AGAGCGG-AAGAACCCTGTAAA-------TG-----TAGGGG--T--GGAAAGGTCAAA--gtt
gi|8 : gtgtgtggtttgtttattatcccctcacaattcattgtgagaggcgatatactatagtaaagggaccattcGTG-AATGAGTGT----T-CATTGT-TGAG-C-TTGTAGACCCTCTCTAGTCCGCGTGTTAT-GATCG-A-TCAATTT-GATATTT------CA-----TA--C---GTTG-CTCT-CTT-G-TCA--AAAGAGG-GAGAA--------------------TTTCGCCGT------AAAAAGTCAAAG-GCT-AA----GGTCGA--ACGGGAC--TTC--GTAAA----A----tcatgagctagaaatagatgtattaaagttttaatattttaaattattttgtagattccagagga
gi|10 : tttttatcctctcgcaattttttgtgagaggggacatggtgatgggctcgtttcctatgtgtgtggataaggctTG-TGCGTGTGT----AACA-----CTGATC-TTGTAGACAATCAACAGGTCGCATTTTTT-GCTTG-A-TTCATTA-GATACTT------C--------------GTA-----------A-TCA--AGAGAGG-AAGAACCA---TAT-------TG-ATTTTAGGGT--T--Ag
gi|11 : aaattttactgtatttgagtgttatgatatcccctcgcaattcattgttgggggagataacaacaccgttcgtgcatggaaataactcTG-TGTA-ATGT----TACAGTG----------TGTAGACACTTTATAAGCCAAATTTTTT-GCT-T-ACTTGATTT-GATACTG------CA-----CA--T---ATGG-CTTC-GTT-ctatgggacttgatagaacaag
gi|3 : agtaataagactaatcgtgtataggactataggtttatattt-GTGT----AATA-----CTGA-TATTGCAGGCACTCTACATGCCAC-CTTTAT-ATTTG-A-TTGGTTT-GATACTTTGAATGCA-----CC--G---GTAG---TT-GTT-A-TCA--AGAGAGG-AAAATCCT---GAA-------TTTATTTTGGGGG--T--CAATAGGTCAAATGATTATA----GTTC--CTGTGATAC--TTT--TTGGA----G----AA------A------GC-TTG---T---AAGCA---C-T--CA-TTGCGATGAAATATGTTTTGCCTTGCGGcatttttatccaaaggtcaaggtcactactagattcttagaaaaggctcatagaccgcttagtggggatatgtcccattttgcaaagctctgttt
gi|4 : cccctcgccatttattgtgagaggggacataccggtagttgtgtggcctgttG-C-TTGAAGACACTCTAAAGGCCTTATTTTTC-GCTGA-A-TTGATTT-GATACTT------CA-----CA--T---GTAA-CTAT-GT------------------AAAATGC---TAT-------TG-AATTTGGT-T--C--AAAAAGATCA------TA-------GTC-ATTATGGAAC--TTC--ATAGA----A----AA------A------GC-TTG---T---AGACA---C-T--GA-TTGCAAGGGGATAAACCCTGACTAGCAGAGCtg
gi|5 : tctccttgtaattgattgtgagaggggaaatactaacgggaccattcgggtgtggatatattttggtgaG-C-TTGAAGACACTCTAAAGGCCTTATTTTTC-GCTGA-A-TTGATTT-GATACTT------CA-----CA--T---GTAA-CTAT-GT------------------AAAATGC---TAT-------TG-AATTTGG--T--TCAAAAAAGATCA------TA-------GTC-ATTATGGAAC--TTC--ATAGA----A----AA------A------GC-TTG---T---AGACA---C-T--GA-TTGCAAGGGGATAAACCCTGACTAGCAGAGCacttc
gi|2 : tctccttgtaattgattgtgagaggggaatactaacgggaccattcgggtgtggatatattttggtga-C-TTGTAGACATTCTACAGGCCAAATTTTAT-GCTCA-G-TTGATTT-GATACTT------TA-----CA--T---GTAC-ATAT-TTT-A-TCA--GTAGAGA-AATCTCCC---TAT-------TG-ATTTTGGGGT--T---AAAAGGT-------CTAAATG--GGGC-TTTATTG-----ATTTAAAAAA----A----ACCCACCAA------AC-TTG---C---AGACA---C-T--TA-TTGGGAGGGGATAT-CCCTGCCTTGCGTAGCTCacttc
gi|14 : tgggatacatgtctgtgtagggtctttttatctcctggcaattcattgtgagggggataaagtgacaccaatCTCTATATAGGCCACATTTTTT-A---T-G-CTCATT----------------A-----CA--T---GTAG-CAAT-GTT-A-T-A--CA-GAGG-AAGAACCC---TA--------TG-A--AAAGGAT--T--GAAAATATCAA-----TA--------TC-ACTATAGGAC--TTC--ATAGA----A----AA------A------GC-TTG---T---ATACA---G-T--CA-TTACTAAGGGATATGCCCTGCTGTGCAGACCTCTTGTT
gi|6 : ATTTTG---CTTA-A-TTGATTT-CATAT-----------------------ATAG-CTTT-GTT-A-TCA--gat
gi|17 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaTTTTG---CTCC-G-TTGATGT-CATATTT------CA-----CA--T---GTAA-CTTA-GTT-A-TCA--ACAGAAG-AAGA------------------G-TTTTTGGGAT--T--ATAAGGTTCAAG--G-TGAA----GGTC-AGTATGGGA-------------------------------------GC-TTG---T---AGATA---C-T--GA-TTGCATGGGGATATCCTCCACCTTGTGGAGCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagaaaaagcttgcagacactccttgtggggggtattccccaccttgtggagcc
gi|16 : TTTTGC-ACC---A-TTGATTT-CATACTT------CATGTCACATGATGTGTAG-CTTC--TT-A-TCA--AAAGGGGGAAGAACCC---TA-------------TC-------------------CAAA--GTTTAA----TGTC-ACT----------TC--TTAGA----A----AA------A------GT-TTG---T---AGACACCCA-T--TGTGTG---GGGGATATGCCCGGACTTGTGGAGCTCTTGCTt
gi|12 : tTTTAT-TTTCTGA-TTGATTT-AACACTTAGTATACA-----TA--G---TTAG-CTTT-GTT-A-TCA--AGAGTGG-GAGAAAC------------------TTCTGGAGT--T---------TCAGA----TGAACAATGGTT-GCTAGGGGAG--TTT--GTAGA----A----A-------A------AG-TTGAACTTCAAGACA---C-T--CC-TTGCCAGGGGAT-TTCCCCACCTT-CCCAGCTCCTG
gi|25 : atgcaggcactagacagaccaggT-ACTTT-A-TTGATTTTGATACTT------CA-----CA--T---GTAG-CTTT-GTT-A-T----TAAGA---AAGAA
gi|15 : CTCG-A-TTGTTAT-CATACTT------AT-----CA--C---GTAG-CGTT-GTTTA-TCA--AGAGAGG-AAGAACAC---TAAT------TG-ATCTAGGGGTCCT--AAA---GTCAAaaaaatatctaatgaaattgtgtggccaaa
gi|21 : taatcccctcgaaattcattacgacacgggatatacaaatgtagtaacgggtgcgcgcgcgcttgtgtgaatgagacagtcttcgATAT-GATACTT------CA-----CA--T---GCAG-CTTT-GTT-A-------AAGAG-----AACCC---TAA-------AG-CTT--AGTAT--T--AAAA-GGTCAAA--GTTCAA----GGTC-ACTGTGGGAG--GTC--ATAGA----A----AA------A------AC-TTG---C-----ATA---G-T--T--AT-CAAGAGAGTATATCTg
gi|20 : ATAT-GATACTT------CA-----CA--T---GCAG-CTTT-GTT-A-------AAGAG-----AACCC---TAA-------AG-CTT--AGTAT--T--AAAA-GGTCAAA--GTTCAA----GGTC-ACTGTGGGAG--GTC--ATAGA----A----AA------A------AC-TTG---C-----ATA---G-T--T--AT-CAAGAGAGTATATCT
gi|19 : ATAT-GATACTT------CA-----CA--T---GCAG-CTTTTGTT-A-------AAGAGA-AA---CCT---TAA-------AG-CTT--GTATT--T--AAAAAGGTCAAA--GTTCAA----GGTC-ACTGTGGGAG--GTC--ATAGA----A------------A------AC-TTG---C-----ATA---G-T--T--AT-CAAGAGAGTATATCTT
gi|22 : T-GATACTT------CA-----CA--T---GCAG-CTTT-GTT-A----------AAG-GAGAACCC---TAA-------AG-CTT--AGTAT--T--AAAA-GGTCAAA--GTTCAA----GGTC-ACTGTGGGAG--GTC--ATAGA----A----AA------A------AC-TTG---C-----ATA---G-T--T--AT-CAAGAGAGTATATCT
gi|26 : ---GTAGACTTT-GTT-GCTCA----AGTTG-TAGAACCC---TGT-------TG-ATTTTGGGGT--T--CATAA-GTCAAG--G
gi|18 : -CTTT-CTT-T-TCAATTAAGAG---AGAAA-----GAAATATATTTA-ATTATGGAAT--C--CAAA-GGTCAA-----TAA-----GGTC-AGTACTGGAC--TTC--ATGGATGCTT----AT------A------A---TG---T---AGACA---T-C--CA-TTGTGAGGGG--ATGTCCTGCCTATTGGAACTCTtca
gi|23 : CAAA--GGTCAA----GGTC-ACTATGGAAC--TTC--ATAGA----A----AA------A------GC-TCA---A---GGACT---T-T--CA-TTGCAAGGGGATATTCCCCGTCTGGTAGAGTTCTTGTTttggttt
gi|11 : cCAAA--GGTCAA----GGTC-ACTACTAGAT---TC--TTAGA----A----A-------A------GGCTCA---T---AGACC---GCT--TA-GT----GGGGATATGTCCCATTTTGCAAAGCT-CTGTTg
gi|6 : agtaataagactaatcgtgtataggactataggtttatattttgtgtaatgttacagtgtgtagacactttataagccaaattttttgcttacttgatttgatactgcacatatggcttcgttcatttttatcTAGA----A----AA------A------GC-TTG---C---AGACA---C-TCCTT-GTG---GGGGGTATTCCCCACCTTGTGGAGCt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATACGTCACACGTAGCCATGTTATGAAGATAGGCGGTACCCTGTTGATTTGACTCCTAAGGGGGTGTGTAGACCGCAGATTTAAATAAATCTGTATTTAGATCAATTAGATATTTATATTCACAGATTGTCTACTTTGCGAAGGGATGTCCTGCCTTTCGGAACTCTTTTTGTTCTCT
Unaligned ( gi|24 ): ACAGAGAAACAATGGATACAAAGCTCAAGGTCACAAACCTGTAGACACACATTGCATGAGGATAAACCCCACCTTGCCAATCTCT
Alignments
lowQualScore : 1111 44444444 11111 111111111 11111111111111111 1111111
lowQualScore : 3 5 3 0 2222 0 00000000 2 3 55 66 1 999999 44444 00000 1 1 5555555 1 666666 22 22 999999999 0 1 55555555555555555 0000000 4444 1 0 44 0 555555 55555 55555 2 2 1 2 22 888888888 22 4 0
lowQualScore : . . . . .... . ........ . . .. .. . ...... ..... ..... . . ....... . ...... .. .. ......... . . ................. ....... .... . . .. . ...... ..... ..... . . . . .. ......... .. . .
lowQualScore : 2 7 0 7 1111 7 55555555 5 4 66 00 9 111111 55555 44444 7 7 7777777 7 333333 11 44 888888888 7 7 55555555555555555 7777777 0000 9 7 00 1 888888 00000 33333 1 1 0 4 33 444444444 77 3 2
consensus : TGTGAGTG-TGTGGTGT----AACAGTGN--TG-G-CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TT-A-TCAAGAGAGG-AAGAA--CCCT--ATT-G--ATT-TTGGGGT--T--AAAAAGG--TCAAA--GT-TCAA----GGTC-ACTATGGGACTTCATAGAAA------AAG-----CT-----TGTAGAC-ACTCATTG---------CG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
Reference ( family-445 ) : TGTGAGTG-TGTGGTGT----AACAGTGC--TG-G-CTTGTAGACACTCTACAGGCCACATTT-TNT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TT-A-TCAAAAGAGG-AAGAA--CCCT--ANT-G--ATT-TTGGGGT--T--AAAAAGG--TCAAA--GT-TNAA----GGTC-ACTATGGGACTTCATAGAAA------AAG-----CT-----TGTAGAC-ANTTANTG---------CA-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
gi|1 : GTG-TGTGG-------AAAAGTACACTG-GACTTATTGACAATTTACAAACCACATTT-T----GCTTGATTGATAG-GATACTT------TA-----CATGATTG-TAG-CTTT-G-------TT-A-TCAAGAGCGG-AAGAA--CCCT---GT-A--AAT-GTAGGGG--T--GGAAAGG--TCAAA--
gi|10 : gtgtgtggtttgtttattatcccctcacaattcattgtgagaggcgatatactatagtaaagggaccattcGTG-CGTG-TGT----AACACTGA--T----CTTGTAGACAATCAACAGGTCGCATTT-TTT--GCTTGATTCATTA-GATACTT------C---------G-----TA------------------A-TCAAGAGAGG-AAGAA--CCAT--ATT-G--ATT-TTAGGGT--T----------------------------------ACTATGGGACTTGATAGAAC------AAG-----tcatgagctagaaatagatgtattaaagttttaatattttaaattattttgtagattccagagga
gi|11 : aaattttactgtatttgagtgttatgatatcccctcgcaattcattgttgggggagataacaacaccgttcgtgcatggaaataactctTG-TGTAATGT----TACAGTG----------TGTAGACACTTTATAAGCCAAATTT-TTT--GCTTACTTGATTT-GATACTG------CA-----CATA-----TGG-CTTC-GTTCATTTTT-A-TCCAAAGGTC-AAGGT--CACT--ACTAG--ATTCTTAG---------AAAAGGC-TCATA--G
gi|11 : agtaataagactaatcgtgtataggactataggtttatatttCAAA--GG-TCAA----GGTC-ACTACTAGA-TTCTTAGAAA------AGG-----CT-----CATAGACCGCTTAGTG--------------GGGATATGTCCCATTTTGCAAAGCTC-TGTTaccgcttagtggggatatgtcccattttgcaaagctctgttt
gi|12 : agtaataagactaatcgtgtataggactataggtttatattttgtgtaatgttacagtgtgtagacactttataagccaaattttttgcttacttgatttgatactgcacatatggcttcgttcatttttatcTGCAGGCACTAGACAGACCAGGTTTATTT--TCT-GATTGATTT-AACACTTAGTA--TA-----CATAGT---TAG-CTTT-G-------TT-A-TCAAGAGTGG-GAGAA--AC------------TT-CTGGAGT--T-----------TCAGA-----TGAACAATGGTT-GCTAGGGGAGTTTGTAGAAA------AAGTTGAACT-----TCAAGAC-ACTCCTTG---------CC-AGGGGAT-TTCCCCACCTT-CCCAGCTCCTGt
gi|13 : aATACGT------CA-----CACG-----TAG-CCAT-G-------TT-A-TGAAGATAGG-CGGTA--CCCT--GTT-G--ATT-T
gi|14 : CTATATAGGCCACATTT-TTTATGCTC-----ATT----------------A-----CATG-----TAG-CAAT-G-------TT-A-T--ACAGAGG-AAGAA--CCCT--A-------------------T--GAAAAGGATTGAAA--ATATCAA----TATC-ACTATAGGACTTCATAGAAA------AAG-----CT-----TGTATAC-AGTCATTA---------CT-AAGGGATATGCCCTGCTGTGCAGACCTCTTGTTgactcctaagggggtgtgtagaccgcagatttaaataaatctgtatttagatcaattagatatttatattcacagattgtctactttgcgaagggatgtcctgcctttcggaactctttttgttctct
gi|15 : ctACAGTC-TTC--GCTCGATTGTTAT-CATACTT------AT-----CACG-----TAG-CGTT-G-------TTTA-TCAAGAGAGG-AAGAA--CACTA-ATT-G--ATC-TAGGGGTCCT--AAA---G--TCAAgat
gi|16 : taatcccctcgaaattcattacgacacgggatatacaaatgtagtaacgggtgcgcgcgcgcttgtgtgaatgagTT-TTT--GCACCATTGATTT-CATACTT------CATGTCACATGATGTGTAG-CTTC---------TT-A-TCAAAAGGGGGAAGAA--CCCT--ATC------------------------------CAAA--GT-TTAA----TGTC-ACT--------TCTTAGAAA------AAG-----TT-----TGTAGAC-ACCCATTG---------TGTGGGGGATATGCCCGGACTTGTGGAGCTCTTGCTg
gi|17 : T-TTT--GCTCCGTTGATGT-CATATTT------CA-----CATG-----TAA-CTTA-G-------TT-A-TCAACAGAAG-AAGA-------------G--TTT-TTGGGAT--T--ATAAGGT--TCAAG--G--TGAA----GGTC-AGTATGGG-------------------AG-----CT-----TGTAGAT-ACTGATTG---------CA-TGGGGATATCCTCCACCTTGTGGAGCT
gi|18 : -A-TTAAGAGAGA-AAGAA--ATAT--ATTTA--ATT-ATGGAAT--C--CAAA-GG--TCAA-------TAA----GGTC-AGTACTGGACTTCATGG---------ATG-----CTTATAATGTAGAC-ATCCATTG---------TG-AGGGG--ATGTCCTGCCTATTGGAACTCTTt
gi|19 : ctttcttttcaATAT-GATACTT------CA-----CATG-----CAG-CTTTTG-------TT-A-----AAGAGA-AA-----CCTT--AA-----AGC-TTGTATT--T--AAAAAGG--TCAAA--GT-TCAA----GGTC-ACTGTGGGAGGTCATAGAAA------A-------CT-----TGC--AT-AGTTAT-----------CA-AGAGAGTATttggttt
gi|2 : -CTTGTAGACATTCTACAGGCCAAATTT-TAT--GCTCAGTTGATTT-GATACTT------TA-----CATG-----TAC-ATAT-T-------TT-A-TCAGTAGAGA-AATCT--CCCT--ATT-G--ATT-TTGGGGT--T---AAAAGG--TCTAA--AT----G----GGGC-TTTAT-TGATTTAAAAAAAACCCACCAAA-----CT-----TGCAGAC-ACTTATTG---------GG-AGGGGATAT-CCCTGCCTTGCGTAGCTCatctt
gi|20 : tgggatacatgtctgtgtagggtctttttatctcctggcaattcattgtgagggggataaagtgacaccaatATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-------TT-A-----AAGAG-----AA--CCCT--AA-----AGC-TTAGTAT--T--AAAA-GG--TCAAA--GT-TCAA----GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CT-----TGC--AT-AGTTAT-----------CA-AGAGAGTAT
gi|21 : ATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-------TT-A-----AAGAG-----AA--CCCT--AA-----AGC-TTAGTAT--T--AAAA-GG--TCAAA--GT-TCAA----GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CT-----TGC--AT-AGTTAT-----------CA-AGAGAGTATatct
gi|22 : T-GATACTT------CA-----CATG-----CAG-CTTT-G-------TT-A--------AAG-GAGAA--CCCT--AA-----AGC-TTAGTAT--T--AAAA-GG--TCAAA--GT-TCAA----GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CT-----TGC--AT-AGTTAT-----------CA-AGAGAGTATatct
gi|23 : CAAA--GG-TCAA----GGTC-ACTATGGAACTTCATAGAAA------AAG-----CT-----CAAGGAC-TTTCATTG---------CA-AGGGGATATTCCCCGTCTGGTAGAGTTCTTGTTatct
gi|24 : cCAAA--GC-TCAA----GGTC-AC------------------------AAA-----CC-----TGTAGAC-ACACATTG---------CA-TGAGGATAAACCCCACCTTGCCAATCTCTg
gi|25 : acagagaaacaatggataT--ACTTTATTGATTTTGATACTT------CA-----CATG-----TAG-CTTT-G-------TT-A-TTAAGAAAGA-AAAAAATATCT--AAT-GAAATT-GTGTGGC--C--AAA
gi|26 : G-----TAGACTTT-G-------TT-GCTCAA--GTTG-TAGAA--CCCT--GTT-G--ATT-TTGGGGT--T--CATAAG-------------TCAA----GGTC-A
gi|3 : TGTG-GCC-TGTTGTGT----AATACTGA--TA----TTGCAGGCACTCTACATGCCAC-CTT-TAT--ATTTGATTGGTTT-GATACTTTGAATGCA-----CCGG-----TAG---TT-G-------TT-A-TCAAGAGAGG-AA-AA--TCCTGAATT-T--ATT-TTGGGGG--T--CAATAGG--TCAAATGAT-TATA----GTTC--CTGTGATACTTTTTGGAGA------AAG-----CT-----TGTAAGC-ACTCATTG---------CG-ATGAAATATGTTTTGCCTTGCGG
gi|4 : cccctcgccatttattgtgagaggggacataccggtagttg-G-CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-------T----------------AAAA--TGCT--ATT-G--AAT-TTGGT-T--C--AAAAAGA--TCATA--GT------------C-ATTATGGAACTTCATAGAAA------AAG-----CT-----TGTAGAC-ACTGATTG---------CA-AGGGGATAAACCCTGACTAGCAGAGCACTTtg
gi|5 : tctccttgtaattgattgtgagaggggaaatactaacgggaccattcgggtgtggatatattttggtga-G-CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-------T----------------AAAA--TGCT--ATT-G--AAT-TTGG--T--TCAAAAAAGA--TCATA--GT------------C-ATTATGGAACTTCATAGAAA------AAG-----CT-----TGTAGAC-ACTGATTG---------CA-AGGGGATAAACCCTGACTAGCAGAGCACTTc
gi|6 : tctccttgtaattgattgtgagaggggaatactaacgggaccattcgggtgtggatatattttggtgaT-TTT--GCTTAATTGATTT--------------CA-----TATA-----TAG-CTTT-G-------TT-A-TCAc
gi|6 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaaTAGAAA------AAG-----CT-----TGCAGAC-ACTCCTTG---------T--GGGGGGTATTCCCCACCTTGTGGAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagaaaaagcttgcagacactccttgtggggggtattccccaccttgtggagcc
gi|7 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaattttgcttaattgatttcatatatagctttgttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGTGAGAGATGTAGTGTCCGAAACAGT---------CTTGT---CTGTCTGCAGGCCACTTTT-TTTT-GCTCAGTTGAGTC-AATACAT------TA-----CATG-----TAG-CTTT-G-------TT-A-TCAAATAAGG-AAGAA--TCCT--TTT-G--ATT-TTTGGGT--------------CCAAA--GG-TCAA----GGTC-A-TATAGGACTTCTTA-CAG------AAG-----CT-----TATATTT-ACTGATTGTGTACATTACA-AGGG---ATGTCCTACTTTTTAGAGCTTTTGTTc
gi|8 : tcatgcaattcatTGTGAATG-AGTGTT--------CATTGT--TGAG-CTTGTAGACCCTCTCTAGTCCGCGTGT-TAT--GATCGATCAATTT-GATATTT------CA-----TACG-----TTG-CTCT-C-------TT-G-TCAAAAGAGG-GAGA----------------ATT-TCGCCGT------AAAAAG--TCAAA--GG-CTAA----GGTCGA--ACGGGACTTCGTAAAAgtt
gi|9 : tttttatcctctcgcaattttttgtgagaggggacatggtgatgggctcgtttcctatgtgtgtggataaggcTGCGAGTG-TATGGTGT----AACAGTGCC-TG-G-CTTGTAGACTCTCCACAGGGCACATTT-TGT--ACTCTATTGATTT-GATACTT------CA-----CAAG-----TAG-CTTT-G-------TT-A-TCATAAGAGG-AAGAA--CCCG--AAT-G--ATT-CTGGGGT--T--AAAAAGG--TCAAA--GC-TAAA----GGTC-ATTACAGGACATTATAGAAA------TAG-----GT-----TGTAGAC-AGTTGGTG---------CA-AGGGGGTATACCTTGCCTTGCGGAGCTCCTGTTg
Alignments
lowQualScore : 1111 33333333 11111 1111111 111111111111111
lowQualScore : 3 5 3 0 2222 0 77777777 2 0 55 66 1 999999 44444 00000 1 1 1 444 1 22 5555555 0 777777777777777 3 88 1 1 0 44 0 555555 55555 55555 2 2 888888888 333 4 0
lowQualScore : . . . . .... . ........ . . .. .. . ...... ..... ..... . . . ... . .. ....... . ............... . .. . . . .. . ...... ..... ..... . . ......... ... . .
lowQualScore : 2 7 0 7 1111 7 99999999 5 4 66 00 9 111111 55555 44444 7 7 7 555 7 66 4444444 3 000000000000000 6 44 9 9 7 00 1 888888 00000 33333 1 1 444444444 777 3 2
consensus : TGTGAGTG-TGTGGTGT----AACAGTGN--TG-G-CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATTTTGGGGT--TAAAAAGG--TCAAA-GN-TCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
Reference ( family-445 ) : TGTGAGTG-TGTGGTGT----AACAGTGN--TG-G-CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATTTTGGGGT--TAAAAAGG--TCAAA-GT-TCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
gi|1 : GTG-TGTGG-------AAAAGTACACTG-GACTTATTGACAATTTACAAACCACATTT-T----GCTTGATTGATAG-GATACTT------TA-----CATGATTG-TAG-CTTT-G-TTA-TCAAGAGCGG-AAGAACCCT--GTA-AATGTAGGGG---TGGAAAGG--TCAAA-
gi|10 : gtgtgtggtttgtttattatcccctcacaattcattgtgagaggcgatatactatagtaaagggaccattcGTG-CGTG-TGT----AACACTGA--T----CTTGTAGACAATCAACAGGTCGCATTT-TTT--GCTTGATTCATTA-GATACTT------C---------G-----TA-----------A-TCAAGAGAGG-AAGAACCAT--ATT-GATTTTAGGGT--T----------------------------ACTATGGGACTTGATAGAAC------AAG-----tcatgagctagaaatagatgtattaaagttttaatattttaaattattttgtagattccagagga
gi|11 : aaattttactgtatttgagtgttatgatatcccctcgcaattcattgttgggggagataacaacaccgttcgtgcatggaaataactctTG-TGTAATGT----TACAGTG----------TGTAGACACTTTATAAGCCAAATTT-TTT--GCTTACTTGATTT-GATACTG------CA-----CATA-----TGG-CTTC-G-TT
gi|11 : agtaataagactaatcgtgtataggactataggtttatatttCAAA-GG-TCAA-GGTC-ACTACTAGA-TTCTTAGAAA------AGG-----CTC-----ATAGACCGCT---------TAGTG-----GGGATATGTCCCATTTTGCAAAGCTC-TGTTcatttttatccaaaggtcaaggtcactactagattcttagaaaaggctcatagaccgcttagtggggatatgtcccattttgcaaagctctgttt
gi|12 : agtaataagactaatcgtgtataggactataggtttatattttgtgtaatgttacagtgtgtagacactttataagccaaattttttgcttacttgatttgatactgcacatatggcttcgttcatttttatcTGCAGGCACTAGACAGACCAGGTTTATTT--TCT-GATTGATTT-AACACTTAGTA--TA-----CATAGT---TAG-CTTT-G-TTA-TCAAGAGTGG-GAGAAAC----------TTCTGGAGT--T---------TCAGATGA-ACAATGGTT-GCTAGGGGAGTTTGTAGAAA------AAGTTGAACTT-----CAAGAC-ACT---------CCTTGCC-AGGGGAT-TTCCCCACCTT-CCCAGCTCCTGt
gi|13 : aATACGT------CA-----CACG-----TAG-CCAT-G-TTA-TGAAGATAGG-CGGTACCCT--GTT-GATTT
gi|14 : CTATATAGGCCACATTT-TTTATGCTC-----ATT----------------A-----CATG-----TAG-CAAT-G-TTA-T--ACAGAGG-AAGAACCCT--A----------------TGAAAAGGATTGAAA-ATATCAA-TATC-ACTATAGGACTTCATAGAAA------AAG-----CTT-----GTATAC-AGT---------CATTACT-AAGGGATATGCCCTGCTGTGCAGACCTCTTGTTgactcctaagggggtgtgtagaccgcagatttaaataaatctgtatttagatcaattagatatttatattcacagattgtctactttgcgaagggatgtcctgcctttcggaactctttttgttctct
gi|15 : ctACAGTC-TTC--GCTCGATTGTTAT-CATACTT------AT-----CACG-----TAG-CGTT-GTTTA-TCAAGAGAGG-AAGAACACTA-ATT-GATCTAGGGGTCCTAAA---G--TCAAgat
gi|16 : taatcccctcgaaattcattacgacacgggatatacaaatgtagtaacgggtgcgcgcgcgcttgtgtgaatgagTT-TTT--GCACCATTGATTT-CATACTT------CATGTCACATGATGTGTAG-CTTC---TTA-TCAAAAGGGGGAAGAACCCT--ATC-------------------------CAAA-GT-TTAA-TGTC-ACT--------TCTTAGAAA------AAG-----TTT-----GTAGAC-ACC---------CATTGTGTGGGGGATATGCCCGGACTTGTGGAGCTCTTGCTg
gi|17 : T-TTT--GCTCCGTTGATGT-CATATTT------CA-----CATG-----TAA-CTTA-G-TTA-TCAACAGAAG-AAGA-----------GTTTTTGGGAT--TATAAGGT--TCAAG-G--TGAA-GGTC-AGTATGGG-------------------AG-----CTT-----GTAGAT-ACT---------GATTGCA-TGGGGATATCCTCCACCTTGTGGAGCT
gi|18 : A-TTAAGAGAGA-AAGAAATAT--ATTTAATTATGGAAT--CCAAA-GG--TCAA------TAA-GGTC-AGTACTGGACTTCATGGAT---------G-----CTTATAATGTAGAC-ATC---------CATTGTG-AGGGG--ATGTCCTGCCTATTGGAACTCTTt
gi|19 : ctttcttttcaATAT-GATACTT------CA-----CATG-----CAG-CTTTTG-TTA---AAGAGA------AACCTT--A---AAGCTTGTATT--TAAAAAGG--TCAAA-GT-TCAA-GGTC-ACTGTGGGAGGTCATAGAAA------A-------CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATttggttt
gi|2 : -CTTGTAGACATTCTACAGGCCAAATTT-TAT--GCTCAGTTGATTT-GATACTT------TA-----CATG-----TAC-ATAT-T-TTA-TCAGTAGAGA-AATCTCCCT--ATT-GATTTTGGGGT--T-AAAAGG--TCTAA-AT----G-GGGC-TTTAT-TGATTTAAAAAAAACCCACCAAA-----CTT-----GCAGAC-ACT---------TATTGGG-AGGGGATAT-CCCTGCCTTGCGTAGCTCctt
gi|20 : tgggatacatgtctgtgtagggtctttttatctcctggcaattcattgtgagggggataaagtgacaccaatATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-TTA---AAGAGA-------ACCCT--A---AAGCTTAGTAT--TAAAA-GG--TCAAA-GT-TCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATAT
gi|21 : ATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-TTA---AAGAGA-------ACCCT--A---AAGCTTAGTAT--TAAAA-GG--TCAAA-GT-TCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATct
gi|22 : T-GATACTT------CA-----CATG-----CAG-CTTT-G-TTA--------AAG-GAGAACCCT--A---AAGCTTAGTAT--TAAAA-GG--TCAAA-GT-TCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATct
gi|23 : CAAA-GG-TCAA-GGTC-ACTATGGAACTTCATAGAAA------AAG-----CTC-----AAGGAC-TTT---------CATTGCA-AGGGGATATTCCCCGTCTGGTAGAGTTCTTGTTct
gi|24 : cCAAA-GC-TCAA-GGTC-AC------------------------AAA-----CCT-----GTAGAC-ACA---------CATTGCA-TGAGGATAAACCCCACCTTGCCAATCTCTg
gi|25 : acagagaaacaatggataT--ACTTTATTGATTTTGATACTT------CA-----CATG-----TAG-CTTT-G-TTA-TTAAGAAAGA-AAAAA
gi|26 : G-----TAGACTTT-G-TTGCTCAAGTT--G-TAGAACCCT--GTT-GATTTTGGGGT--TCATAAG------------TCAA-GGTC-Aatatctaatgaaattgtgtggccaaa
gi|3 : TGTG-GCC-TGTTGTGT----AATACTGA--TA----TTGCAGGCACTCTACATGCCAC-CTT-TAT--ATTTGATTGGTTT-GATACTTTGAATGCA-----CCGG-----TAG---TT-G-TTA-TCAAGAGAGG-AA-AATCCTGAATT-TATTTTGGGGG--TCAATAGG--TCAAATGA-TTAT-AGTT-CCTGTGATACTTTTTGGAGA------AAG-----CTT-----GTAAGC-ACT---------CATTGCG-ATGAAATATGTTTTGCCTTGCGG
gi|4 : cccctcgccatttattgtgagaggggacataccggtagttgTGG--TGAG-CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-T---------------AAAATGCT--ATT-GAATTTGGT-T--CAAAAAGA--TCATA-GT---------C-ATTATGGAACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------GATTGCA-AGGGGATAAACCCTGACTAGCAGAGCACTTtg
gi|5 : tctccttgtaattgattgtgagaggggaaatactaacgggaccattcgggtgtggatatatttTGG--TGAG-CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-T---------------AAAATGCT--ATT-GAATTTGG--T--TCAAAA-------AA-GA-TCAT-AGTC-ATTATGGAACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------GATTGCA-AGGGGATAAACCCTGACTAGCAGAGCACTTc
gi|6 : tctccttgtaattgattgtgagaggggaatactaacgggaccattcgggtgtggatatatttT-TTT--GCTTAATTGATTT--------------CA-----TATA-----TAG-CTTT-G-TTA-TCAc
gi|6 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaaTAGAAA------AAG-----CTT-----GCAGAC-ACT---------CCTTGTG--GGGGGTATTCCCCACCTTGTGGAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagaaaaagcttgcagacactccttgtggggggtattccccaccttgtggagcc
gi|7 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaattttgcttaattgatttcatatatagctttgttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGTGAGAGATGTAGTGTCCGAAACAGT---------CTTGT---CTGTCTGCAGGCCACTTTT-TTTT-GCTCAGTTGAGTC-AATACAT------TA-----CATG-----TAG-CTTT-G-TTA-TCAAATAAGG-AAGAATCCT--TTT-GATTTTTGGGT------------CCAAA-GG-TCAA-GGTC-A-TATAGGACTTCTTA-CAG------AAG-----CTT-----ATATTT-ACTGATTGTGTACATTACA-AGGG---ATGTCCTACTTTTTAGAGCTTTTGTTc
gi|8 : tcatgcaattcatTGTGAATG-AGTGTT--------CATTGT--TGAG-CTTGTAGACCCTCTCTAGTCCGCGTGT-TAT--GATCGATCAATTT-GATATTT------CA-----TACG-----TTG-CTCT-C-TTG-TCAAAAGAGG-GAGA------------ATTTCGCCGT----AAAAAG--TCAAA-GG-CTAA-GGTCGA--ACGGGACTTCGTAAAAgtt
gi|9 : tttttatcctctcgcaattttttgtgagaggggacatggtgatgggctcgtttcctatgtgtgtggataaggcTGCGAGTG-TATGGTGT----AACAGTGCC-TG-G-CTTGTAGACTCTCCACAGGGCACATTT-TGT--ACTCTATTGATTT-GATACTT------CA-----CAAG-----TAG-CTTT-G-TTA-TCATAAGAGG-AAGAACCCG--AAT-GATTCTGGGGT--TAAAAAGG--TCAAA-GC-TAAA-GGTC-ATTACAGGACATTATAGAAA------TAG-----GTT-----GTAGAC-AGT---------TGGTGCA-AGGGGGTATACCTTGCCTTGCGGAGCTCCTGTTg
Alignments
lowQualScore : 1111 33333333 11111 1111111 22222222222222
lowQualScore : 3 5 3 0 2222 0 77777777 2 0 55 66 1 999999 44444 00000 1 1 7777777 333 3333 3333333 1 33333333333333 22 3 2 1 1 0 44 0 555555 55555 55555 2 2 888888888 333 4 0
lowQualScore : . . . . .... . ........ . . .. .. . ...... ..... ..... . . ....... ... .... ....... . .............. .. . . . . . .. . ...... ..... ..... . . ......... ... . .
lowQualScore : 2 7 0 7 1111 7 99999999 5 4 66 00 9 111111 55555 44444 7 7 4444444 555 0000 3333333 8 11111111111111 33 5 9 9 9 7 00 1 888888 00000 33333 1 1 444444444 777 3 2
consensus : TGTGAGTG-TGTGGTGT----AACAGTGN--TG-G-CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATT-TTGGGGT--T-AAAAGG-TC--AAA-GNTCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
Reference ( family-445 ) : TGTGAGTG-TGTGGTGT----AACAGTGN--TG-G-CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATT-TTGGGGT--TAAAAAGG-TC--AAA-GNTCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
gi|1 : GTG-TGTGG-------AAAAGTACACTG-GACTTATTGACAATTTACAAACCACATTT-T----GCTTGATTGATAG-GATACTT------TA-----CATGATTG-TAG-CTTT-G-------TTA-TCAAGAGCGG-AAGAACCCT--GTA-AATG-TAGGGG---TGGAAAGG-TC--AAA-
gi|10 : gtgtgtggtttgtttattatcccctcacaattcattgtgagaggcgatatactatagtaaagggaccattcGTG-CGTG-TGT----AACACTGA--T----CTTGTAGACAATCAACAGGTCGCATTT-TTT--GCTTGATTCATTA-GATACTT------C---------G-----TA-----------------A-TCAAGAGAGG-AAGAACCAT--ATT-GATT-TTAGGGT--T----------------------------ACTATGGGACTTGATAGAAC------AAG-----tcatgagctagaaatagatgtattaaagttttaatattttaaattattttgtagattccagagga
gi|11 : aaattttactgtatttgagtgttatgatatcccctcgcaattcattgttgggggagataacaacaccgttcgtgcatggaaataactctTG-TGTAATGT----TACAGTG----------TGTAGACACTTTATAAGCCAAATTT-TTT--GCTTACTTGATTT-GATACTG------CA-----CATA-----TGG-CTTC-GTTCATTTTTA-TCCAAAGGTC-AAGGTCACT--ACTAGATTCTTAG-------AAAAGGCTC--ATA-GACC
gi|11 : agtaataagactaatcgtgtataggactataggtttatatttC--AAA-GGTCAA-GGTC-ACTACTAGA-TTCTTAGAAA------AGG-----CTC-----ATAGACCGCT---------TAGTG-----GGGATATGTCCCATTTTGCAAAGCTC-TGTTgcttagtggggatatgtcccattttgcaaagctctgttt
gi|12 : agtaataagactaatcgtgtataggactataggtttatattttgtgtaatgttacagtgtgtagacactttataagccaaattttttgcttacttgatttgatactgcacatatggcttcgttcatttttatcTGCAGGCACTAGACAGACCAGGTTTATTT--TCT-GATTGATTT-AACACTTAGTA--TA-----CATAGT---TAG-CTTT-G-------TTA-TCAAGAGTGG-GAGAAAC----------TT-CTGGAGT--T--------TC--AGATGAACAATGGTT-GCTAGGGGAGTTTGTAGAAA------AAGTTGAACTT-----CAAGAC-ACT---------CCTTGCC-AGGGGAT-TTCCCCACCTT-CCCAGCTCCTGt
gi|13 : aATACGT------CA-----CACG-----TAG-CCAT-G-------TTA-TGAAGATAGG-CGGTACCCT--GTT-GATT-T
gi|14 : CTATATAGGCCACATTT-TTTATGCTC-----ATT----------------A-----CATG-----TAG-CAAT-G-------TTA-T--ACAGAGG-AAGAACCCT--A-T-G--------------AAAAGGA-TTGAAAA-TATCAA-TATC-ACTATAGGACTTCATAGAAA------AAG-----CTT-----GTATAC-AGT---------CATTACT-AAGGGATATGCCCTGCTGTGCAGACCTCTTGTTgactcctaagggggtgtgtagaccgcagatttaaataaatctgtatttagatcaattagatatttatattcacagattgtctactttgcgaagggatgtcctgcctttcggaactctttttgttctct
gi|15 : ctACAGTC-TTC--GCTCGATTGTTAT-CATACTT------AT-----CACG-----TAG-CGTT-GT------TTA-TCAAGAGAGG-AAGAACACTA-ATT-GATC-TAGGGGTCCTAAA---G-TC--AAgat
gi|16 : taatcccctcgaaattcattacgacacgggatatacaaatgtagtaacgggtgcgcgcgcgcttgtgtgaatgagTT-TTT--GCACCATTGATTT-CATACTT------CATGTCACATGATGTGTAG-CTTC---------TTA-TCAAAAGGGGGAAGAACCCT--ATC-------------------------C--AAA-GTTTAA-TGTC-ACT--------TCTTAGAAA------AAG-----TTT-----GTAGAC-ACC---------CATTGTGTGGGGGATATGCCCGGACTTGTGGAGCTCTTGCTg
gi|17 : T-TTT--GCTCCGTTGATGT-CATATTT------CA-----CATG-----TAA-CTTA-G-------TTA-TCAACAGAAG-AAGA-----------GTTT-TTGGGAT--T-ATAAGG-TT--CAA-GGTGAA-GGTC-AGTATGGG-------------------AG-----CTT-----GTAGAT-ACT---------GATTGCA-TGGGGATATCCTCCACCTTGTGGAGCT
gi|18 : A-TTAAGAGAGA-AAGAAATAT--ATTTAATT-ATGGAAT--CCAAA-GG-TC--AA-----TAA-GGTC-AGTACTGGACTTCATGGAT---------G-----CTTATAATGTAGAC-ATC---------CATTGTG-AGGGG--ATGTCCTGCCTATTGGAACTCTTt
gi|19 : ctttcttttcaATAT-GATACTT------CA-----CATG-----CAG-CTTTTG-------TTA---AAGAGA------AACCTT--A---AAGC-TTGTATT--TAAAAAGG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------A-------CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATttggttt
gi|2 : -CTTGTAGACATTCTACAGGCCAAATTT-TAT--GCTCAGTTGATTT-GATACTT------TA-----CATG-----TAC-ATAT-T-------TTA-TCAGTAGAGA-AATCTCCCT--ATT-GATT-TTGGGGT--T-AAAAGG-TC--TAA-AT---G-GGGC-TTTAT-TGATTTAAAAAAAACCCACCAAA-----CTT-----GCAGAC-ACT---------TATTGGG-AGGGGATAT-CCCTGCCTTGCGTAGCTCctt
gi|20 : tgggatacatgtctgtgtagggtctttttatctcctggcaattcattgtgagggggataaagtgacaccaatATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA---AAGAGA-------ACCCT--A---AAGC-TTAGTAT--TAAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATAT
gi|21 : ATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA---AAGAGA-------ACCCT--A---AAGC-TTAGTAT--TAAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATct
gi|22 : T-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA--------AAG-GAGAACCCT--A---AAGC-TTAGTAT--TAAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATct
gi|23 : C--AAA-GGTCAA-GGTC-ACTATGGAACTTCATAGAAA------AAG-----CTC-----AAGGAC-TTT---------CATTGCA-AGGGGATATTCCCCGTCTGGTAGAGTTCTTGTTct
gi|24 : cC--AAA-GCTCAA-GGTC-AC------------------------AAA-----CCT-----GTAGAC-ACA---------CATTGCA-TGAGGATAAACCCCACCTTGCCAATCTCTg
gi|25 : acagagaaacaatggataT--ACTTTATTGATTTTGATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TTAAGAAAGA-AAAAA
gi|26 : G-----TAGACTTT-G-------TTGCTCAAGTT--G-TAGAACCCT--GTT-GATT-TTGGGGT--TCATAAG------------TCAA-GGTC-Aatatctaatgaaattgtgtggccaaa
gi|3 : TGTG-GCC-TGTTGTGT----AATACTGA--TA----TTGCAGGCACTCTACATGCCAC-CTT-TAT--ATTTGATTGGTTT-GATACTTTGAATGCA-----CCGG-----TAG---TT-G-------TTA-TCAAGAGAGG-AA-AATCCTGAATT-TATT-TTGGGGG--TCAATAGG-TC--AAATGATTAT-AGTT-CCTGTGATACTTTTTGGAGA------AAG-----CTT-----GTAAGC-ACT---------CATTGCG-ATGAAATATGTTTTGCCTTGCGG
gi|4 : cccctcgccatttattgtgagaggggacataccggtagttgTGG--TGAG-CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-------T---------------AAAATGCT--ATT-GAAT-TTGG--T--TCAAAA---------A-GATCAT-AGTC-ATTATGGAACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------GATTGCA-AGGGGATAAACCCTGACTAGCAGAGCACTTtg
gi|5 : tctccttgtaattgattgtgagaggggaaatactaacgggaccattcgggtgtggatatatttTGG--TGAG-CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-------T---------------AAAATGCT--ATT-GAAT-TTGG--T--TCAAAA--------AA-GATCAT-AGTC-ATTATGGAACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------GATTGCA-AGGGGATAAACCCTGACTAGCAGAGCACTTc
gi|6 : tctccttgtaattgattgtgagaggggaatactaacgggaccattcgggtgtggatatatttT-TTT--GCTTAATTGATTT--------------CA-----TATA-----TAG-CTTT-G-------TTA-TCAc
gi|6 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaaTAGAAA------AAG-----CTT-----GCAGAC-ACT---------CCTTGTG--GGGGGTATTCCCCACCTTGTGGAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagaaaaagcttgcagacactccttgtggggggtattccccaccttgtggagcc
gi|7 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaattttgcttaattgatttcatatatagctttgttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGTGAGAGATGTAGTGTCCGAAACAGT---------CTTGT---CTGTCTGCAGGCCACTTTT-TTTT-GCTCAGTTGAGTC-AATACAT------TA-----CATG-----TAG-CTTT-G-------TTA-TCAAATAAGG-AAGAATCCT--TTT-GATT-TTTGGGT-----------CC--AAA-GGTCAA-GGTC-A-TATAGGACTTCTTA-CAG------AAG-----CTT-----ATATTT-ACTGATTGTGTACATTACA-AGGG---ATGTCCTACTTTTTAGAGCTTTTGTTc
gi|8 : tcatgcaattcatTGTGAATG-AGTGTT--------CATTGT--TGAG-CTTGTAGACCCTCTCTAGTCCGCGTGT-TAT--GATCGATCAATTT-GATATTT------CA-----TACG-----TTG-CTCT-C-------TTG-TCAAAAGAGG-GAGA------------ATT-TCGCCGT----AAAAAG-TC--AAA-GGCTAA-GGTCGA--ACGGGACTTCGTAAAAgtt
gi|9 : tttttatcctctcgcaattttttgtgagaggggacatggtgatgggctcgtttcctatgtgtgtggataaggcTGCGAGTG-TATGGTGT----AACAGTGCC-TG-G-CTTGTAGACTCTCCACAGGGCACATTT-TGT--ACTCTATTGATTT-GATACTT------CA-----CAAG-----TAG-CTTT-G-------TTA-TCATAAGAGG-AAGAACCCG--AAT-GATT-CTGGGGT--TAAAAAGG-TC--AAA-GCTAAA-GGTC-ATTACAGGACATTATAGAAA------TAG-----GTT-----GTAGAC-AGT---------TGGTGCA-AGGGGGTATACCTTGCCTTGCGGAGCTCCTGTTg
Alignments
lowQualScore : 1111 33333333 11111 1111111 111111111
lowQualScore : 3 5 3 0 2222 0 77777777 2 0 55 66 1 999999 44444 00000 1 1 7777777 333 3333 3333333 1 1 333333333 44 1 22 3 2 2 2 0 44 0 555555 55555 55555 2 2 888888888 333 4 0
lowQualScore : . . . . .... . ........ . . .. .. . ...... ..... ..... . . ....... ... .... ....... . . ......... .. . .. . . . . . .. . ...... ..... ..... . . ......... ... . .
lowQualScore : 2 7 0 7 1111 7 99999999 5 4 66 00 9 111111 55555 44444 7 7 4444444 555 0000 3333333 0 8 333333333 11 9 33 5 3 0 0 7 00 1 888888 00000 33333 1 1 444444444 777 3 2
consensus : TGTGAGTG-TGTGGTGT----AACAGTGN--TG-G-CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATT-TTGGGG-T--T-AAAA-GG-TC--AAA-GNTCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
Reference ( family-445 ) : TGTGAGTG-TGTGGTGT----AACAGTGN--TG-G-CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATT-TTGGGG-T--T-AAAA-GG-TC--AAA-GNTCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
gi|1 : GTG-TGTGG-------AAAAGTACACTG-GACTTATTGACAATTTACAAACCACATTT-T----GCTTGATTGATAG-GATACTT------TA-----CATGATTG-TAG-CTTT-G-------TTA-TCAAGAGCGG-AAGAACCCT--GTA-AATG-TAGGGG-T--G-GAAA-GG-TC--AAA-
gi|10 : gtgtgtggtttgtttattatcccctcacaattcattgtgagaggcgatatactatagtaaagggaccattcGTG-CGTG-TGT----AACACTGA--T----CTTGTAGACAATCAACAGGTCGCATTT-TTT--GCTTGATTCATTA-GATACTT------C---------G-----TA-----------------A-TCAAGAGAGG-AAGAACCAT--ATT-GATT-TTAGGG-T--T-----------------------------ACTATGGGACTTGATAGAAC------AAG-----tcatgagctagaaatagatgtattaaagttttaatattttaaattattttgtagattccagagga
gi|11 : aaattttactgtatttgagtgttatgatatcccctcgcaattcattgttgggggagataacaacaccgttcgtgcatggaaataactctTG-TGTAATGT----TACAGTG----------TGTAGACACTTTATAAGCCAAATTT-TTT--GCTTACTTGATTT-GATACTG------CA-----CATA-----TGG-CTTC-GTTCATTTTTA-TCCAAAGGTC-AAGGTCACT--ACTAGATTCTTAG--------AAAA-GGCTC--ATA-GACC
gi|11 : agtaataagactaatcgtgtataggactataggtttatatttC--AAA-GGTCAA-GGTC-ACTACTAGA-TTCTTAGAAA------AGG-----CTC-----ATAGACCGCT---------TAGTG-----GGGATATGTCCCATTTTGCAAAGCTC-TGTTgcttagtggggatatgtcccattttgcaaagctctgttt
gi|12 : agtaataagactaatcgtgtataggactataggtttatattttgtgtaatgttacagtgtgtagacactttataagccaaattttttgcttacttgatttgatactgcacatatggcttcgttcatttttatcTGCAGGCACTAGACAGACCAGGTTTATTT--TCT-GATTGATTT-AACACTTAGTA--TA-----CATAGT---TAG-CTTT-G-------TTA-TCAAGAGTGG-GAGAAAC----------TT-CTGGAG-T--T---------TC--AGATGAACAATGGTT-GCTAGGGGAGTTTGTAGAAA------AAGTTGAACTT-----CAAGAC-ACT---------CCTTGCC-AGGGGAT-TTCCCCACCTT-CCCAGCTCCTGt
gi|13 : aATACGT------CA-----CACG-----TAG-CCAT-G-------TTA-TGAAGATAGG-CGGTACCCT--GTT-GATT-T
gi|14 : CTATATAGGCCACATTT-TTTATGCTC-----ATT----------------A-----CATG-----TAG-CAAT-G-------TTA-T--ACAGAGG-AAGAACCCT--AT--GA---------------AAAG-GA-TTGAAAA-TATCAA-TATC-ACTATAGGACTTCATAGAAA------AAG-----CTT-----GTATAC-AGT---------CATTACT-AAGGGATATGCCCTGCTGTGCAGACCTCTTGTTgactcctaagggggtgtgtagaccgcagatttaaataaatctgtatttagatcaattagatatttatattcacagattgtctactttgcgaagggatgtcctgcctttcggaactctttttgttctct
gi|15 : ctACAGTC-TTC--GCTCGATTGTTAT-CATACTT------AT-----CACG-----TAG-CGTT-GT------TTA-TCAAGAGAGG-AAGAACACTA-ATT-GATC-TAGGGG-TCCT-AAA---G-TC--AAgat
gi|16 : taatcccctcgaaattcattacgacacgggatatacaaatgtagtaacgggtgcgcgcgcgcttgtgtgaatgagTT-TTT--GCACCATTGATTT-CATACTT------CATGTCACATGATGTGTAG-CTTC---------TTA-TCAAAAGGGGGAAGAACCCT--ATC---------------------------C--AAA-GTTTAA-TGTC-ACT--------TCTTAGAAA------AAG-----TTT-----GTAGAC-ACC---------CATTGTGTGGGGGATATGCCCGGACTTGTGGAGCTCTTGCTg
gi|17 : T-TTT--GCTCCGTTGATGT-CATATTT------CA-----CATG-----TAA-CTTA-G-------TTA-TCAACAGAAG-AAGA-----------GTTT-TTGGGA-T--T-ATAA-GG-TT--CAA-GGTGAA-GGTC-AGTATGGG-------------------AG-----CTT-----GTAGAT-ACT---------GATTGCA-TGGGGATATCCTCCACCTTGTGGAGCT
gi|18 : A-TTAAGAGAGA-AAGAAATAT--ATTTAATT-ATGGAA-T--C-CAAA-GG-TC--AA-----TAA-GGTC-AGTACTGGACTTCATGGAT---------G-----CTTATAATGTAGAC-ATC---------CATTGTG-AGGGG--ATGTCCTGCCTATTGGAACTCTTt
gi|19 : ctttcttttcaATAT-GATACTT------CA-----CATG-----CAG-CTTTTG-------TTA---AAGAGA------AACCTT--A---AAGC-TTGTAT-T--T-AAAAAGG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------A-------CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATttggttt
gi|2 : -CTTGTAGACATTCTACAGGCCAAATTT-TAT--GCTCAGTTGATTT-GATACTT------TA-----CATG-----TAC-ATAT-T-------TTA-TCAGTAGAGA-AATCTCCCT--ATT-GATT-TTGGGG-T--T-AAAA-GG-TC--TAA-AT---G-GGGC-TTTAT-TGATTTAAAAAAAACCCACCAAA-----CTT-----GCAGAC-ACT---------TATTGGG-AGGGGATAT-CCCTGCCTTGCGTAGCTCctt
gi|20 : tgggatacatgtctgtgtagggtctttttatctcctggcaattcattgtgagggggataaagtgacaccaatATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA---AAGAGA-------ACCCT--A---AAGC-TTAGTA-T--T-AAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATAT
gi|21 : ATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA---AAGAGA-------ACCCT--A---AAGC-TTAGTA-T--T-AAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATct
gi|22 : T-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA--------AAG-GAGAACCCT--A---AAGC-TTAGTA-T--T-AAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATct
gi|23 : C--AAA-GGTCAA-GGTC-ACTATGGAACTTCATAGAAA------AAG-----CTC-----AAGGAC-TTT---------CATTGCA-AGGGGATATTCCCCGTCTGGTAGAGTTCTTGTTct
gi|24 : cC--AAA-GCTCAA-GGTC-AC------------------------AAA-----CCT-----GTAGAC-ACA---------CATTGCA-TGAGGATAAACCCCACCTTGCCAATCTCTg
gi|25 : acagagaaacaatggataT--ACTTTATTGATTTTGATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TTAAGAAAGA-AAAAA
gi|26 : G-----TAGACTTT-G-------TTGCTCAAGTT--G-TAGAACCCT--GTT-GATT-TTGGGG-T--T-CATA-AG-TC---AA-GGTCAatatctaatgaaattgtgtggccaaa
gi|3 : TGTG-GCC-TGTTGTGT----AATACTGA--TA----TTGCAGGCACTCTACATGCCAC-CTT-TAT--ATTTGATTGGTTT-GATACTTTGAATGCA-----CCGG-----TAG---TT-G-------TTA-TCAAGAGAGG-AA-AATCCTGAATT-TATT-TTGGGGGT--C-AATA-GG-TC--AAATGATTAT-AGTT-CCTGTGATACTTTTTGGAGA------AAG-----CTT-----GTAAGC-ACT---------CATTGCG-ATGAAATATGTTTTGCCTTGCGG
gi|4 : cccctcgccatttattgtgagaggggacataccggtagttgTGG--TGAG-CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-------T---------------AAAATGCT--ATT-GAAT-TTGG---T--T-CAAA---------AA-GATCAT-AGTC-ATTATGGAACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------GATTGCA-AGGGGATAAACCCTGACTAGCAGAGCACTTtg
gi|5 : tctccttgtaattgattgtgagaggggaaatactaacgggaccattcgggtgtggatatatttTGG--TGAG-CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-------T---------------AAAATGCT--ATT-GAAT-TTGG---T--T-CAAA--------AAA-GATCAT-AGTC-ATTATGGAACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------GATTGCA-AGGGGATAAACCCTGACTAGCAGAGCACTTc
gi|6 : tctccttgtaattgattgtgagaggggaatactaacgggaccattcgggtgtggatatatttT-TTT--GCTTAATTGATTT--------------CA-----TATA-----TAG-CTTT-G-------TTA-TCAc
gi|6 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaaTAGAAA------AAG-----CTT-----GCAGAC-ACT---------CCTTGTG--GGGGGTATTCCCCACCTTGTGGAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagaaaaagcttgcagacactccttgtggggggtattccccaccttgtggagcc
gi|7 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaattttgcttaattgatttcatatatagctttgttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGTGAGAGATGTAGTGTCCGAAACAGT---------CTTGT---CTGTCTGCAGGCCACTTTT-TTTT-GCTCAGTTGAGTC-AATACAT------TA-----CATG-----TAG-CTTT-G-------TTA-TCAAATAAGG-AAGAATCCT--TTT-GATT-TTTGGG-T------------CC--AAA-GGTCAA-GGTC-A-TATAGGACTTCTTA-CAG------AAG-----CTT-----ATATTT-ACTGATTGTGTACATTACA-AGGG---ATGTCCTACTTTTTAGAGCTTTTGTTc
gi|8 : tcatgcaattcatTGTGAATG-AGTGTT--------CATTGT--TGAG-CTTGTAGACCCTCTCTAGTCCGCGTGT-TAT--GATCGATCAATTT-GATATTT------CA-----TACG-----TTG-CTCT-C-------TTG-TCAAAAGAGG-GAGA------------ATT-TCGCCG----T-AAAA-AG-TC--AAA-GGCTAA-GGTCGA--ACGGGACTTCGTAAAAgtt
gi|9 : tttttatcctctcgcaattttttgtgagaggggacatggtgatgggctcgtttcctatgtgtgtggataaggcTGCGAGTG-TATGGTGT----AACAGTGCC-TG-G-CTTGTAGACTCTCCACAGGGCACATTT-TGT--ACTCTATTGATTT-GATACTT------CA-----CAAG-----TAG-CTTT-G-------TTA-TCATAAGAGG-AAGAACCCG--AAT-GATT-CTGGGG-T--TAAAAA-GG-TC--AAA-GCTAAA-GGTC-ATTACAGGACATTATAGAAA------TAG-----GTT-----GTAGAC-AGT---------TGGTGCA-AGGGGGTATACCTTGCCTTGCGGAGCTCCTGTTg
Alignments
lowQualScore : 1111 33333333 11111 1111111 111111111
lowQualScore : 3 5 3 0 2222 0 77777777 2 0 55 66 1 999999 44444 00000 1 1 7777777 333 3333 3333333 1 1 333333333 44 1 22 3 2 2 2 0 44 0 555555 55555 55555 2 2 888888888 333 4 0
lowQualScore : . . . . .... . ........ . . .. .. . ...... ..... ..... . . ....... ... .... ....... . . ......... .. . .. . . . . . .. . ...... ..... ..... . . ......... ... . .
lowQualScore : 2 7 0 7 1111 7 99999999 5 4 66 00 9 111111 55555 44444 7 7 4444444 555 0000 3333333 0 8 333333333 11 9 33 5 3 0 0 7 00 1 888888 00000 33333 1 1 444444444 777 3 2
consensus : TGTGAGTG-TGTGGTGT----AACAGTGN--TG-G-CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATT-TTGGGG-T--T-AAAA-GG-TC--AAA-GNTCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
Reference ( family-445 ) : TGTGAGTG-TGTGGTGT----AACAGTGN--TG-G-CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATT-TTGGGG-T--T-AAAA-GG-TC--AAA-GNTCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
gi|1 : GTG-TGTGG-------AAAAGTACACTG-GACTTATTGACAATTTACAAACCACATTT-T----GCTTGATTGATAG-GATACTT------TA-----CATGATTG-TAG-CTTT-G-------TTA-TCAAGAGCGG-AAGAACCCT--GTA-AATG-TAGGGG-T--G-GAAA-GG-TC--AAA-
gi|10 : gtgtgtggtttgtttattatcccctcacaattcattgtgagaggcgatatactatagtaaagggaccattcGTG-CGTG-TGT----AACACTGA--T----CTTGTAGACAATCAACAGGTCGCATTT-TTT--GCTTGATTCATTA-GATACTT------C---------G-----TA-----------------A-TCAAGAGAGG-AAGAACCAT--ATT-GATT-TTAGGG-T--T-----------------------------ACTATGGGACTTGATAGAAC------AAG-----tcatgagctagaaatagatgtattaaagttttaatattttaaattattttgtagattccagagga
gi|11 : aaattttactgtatttgagtgttatgatatcccctcgcaattcattgttgggggagataacaacaccgttcgtgcatggaaataactctTG-TGTAATGT----TACAGTG----------TGTAGACACTTTATAAGCCAAATTT-TTT--GCTTACTTGATTT-GATACTG------CA-----CATA-----TGG-CTTC-GTTCATTTTTA-TCCAAAGGTC-AAGGTCACT--ACTAGATTCTTAG--------AAAA-GGCTC--ATA-GACC
gi|11 : agtaataagactaatcgtgtataggactataggtttatatttC--AAA-GGTCAA-GGTC-ACTACTAGA-TTCTTAGAAA------AGG-----CTC-----ATAGACCGCT---------TAGTG-----GGGATATGTCCCATTTTGCAAAGCTC-TGTTgcttagtggggatatgtcccattttgcaaagctctgttt
gi|12 : agtaataagactaatcgtgtataggactataggtttatattttgtgtaatgttacagtgtgtagacactttataagccaaattttttgcttacttgatttgatactgcacatatggcttcgttcatttttatcTGCAGGCACTAGACAGACCAGGTTTATTT--TCT-GATTGATTT-AACACTTAGTA--TA-----CATAGT---TAG-CTTT-G-------TTA-TCAAGAGTGG-GAGAAAC----------TT-CTGGAG-T--T---------TC--AGATGAACAATGGTT-GCTAGGGGAGTTTGTAGAAA------AAGTTGAACTT-----CAAGAC-ACT---------CCTTGCC-AGGGGAT-TTCCCCACCTT-CCCAGCTCCTGt
gi|13 : aATACGT------CA-----CACG-----TAG-CCAT-G-------TTA-TGAAGATAGG-CGGTACCCT--GTT-GATT-T
gi|14 : CTATATAGGCCACATTT-TTTATGCTC-----ATT----------------A-----CATG-----TAG-CAAT-G-------TTA-T--ACAGAGG-AAGAACCCT--AT--GA---------------AAAG-GA-TTGAAAA-TATCAA-TATC-ACTATAGGACTTCATAGAAA------AAG-----CTT-----GTATAC-AGT---------CATTACT-AAGGGATATGCCCTGCTGTGCAGACCTCTTGTTgactcctaagggggtgtgtagaccgcagatttaaataaatctgtatttagatcaattagatatttatattcacagattgtctactttgcgaagggatgtcctgcctttcggaactctttttgttctct
gi|15 : ctACAGTC-TTC--GCTCGATTGTTAT-CATACTT------AT-----CACG-----TAG-CGTT-GT------TTA-TCAAGAGAGG-AAGAACACTA-ATT-GATC-TAGGGG-TCCT-AAA---G-TC--AAgat
gi|16 : taatcccctcgaaattcattacgacacgggatatacaaatgtagtaacgggtgcgcgcgcgcttgtgtgaatgagTT-TTT--GCACCATTGATTT-CATACTT------CATGTCACATGATGTGTAG-CTTC---------TTA-TCAAAAGGGGGAAGAACCCT--ATC---------------------------C--AAA-GTTTAA-TGTC-ACT--------TCTTAGAAA------AAG-----TTT-----GTAGAC-ACC---------CATTGTGTGGGGGATATGCCCGGACTTGTGGAGCTCTTGCTg
gi|17 : T-TTT--GCTCCGTTGATGT-CATATTT------CA-----CATG-----TAA-CTTA-G-------TTA-TCAACAGAAG-AAGA-----------GTTT-TTGGGA-T--T-ATAA-GG-TT--CAA-GGTGAA-GGTC-AGTATGGG-------------------AG-----CTT-----GTAGAT-ACT---------GATTGCA-TGGGGATATCCTCCACCTTGTGGAGCT
gi|18 : A-TTAAGAGAGA-AAGAAATAT--ATTTAATT-ATGGAA-T--C-CAAA-GG-TC--AA-----TAA-GGTC-AGTACTGGACTTCATGGAT---------G-----CTTATAATGTAGAC-ATC---------CATTGTG-AGGGG--ATGTCCTGCCTATTGGAACTCTTt
gi|19 : ctttcttttcaATAT-GATACTT------CA-----CATG-----CAG-CTTTTG-------TTA---AAGAGA------AACCTT--A---AAGC-TTGTAT-T--T-AAAAAGG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------A-------CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATttggttt
gi|2 : -CTTGTAGACATTCTACAGGCCAAATTT-TAT--GCTCAGTTGATTT-GATACTT------TA-----CATG-----TAC-ATAT-T-------TTA-TCAGTAGAGA-AATCTCCCT--ATT-GATT-TTGGGG-T--T-AAAA-GG-TC--TAA-AT---G-GGGC-TTTAT-TGATTTAAAAAAAACCCACCAAA-----CTT-----GCAGAC-ACT---------TATTGGG-AGGGGATAT-CCCTGCCTTGCGTAGCTCctt
gi|20 : tgggatacatgtctgtgtagggtctttttatctcctggcaattcattgtgagggggataaagtgacaccaatATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA---AAGAGA-------ACCCT--A---AAGC-TTAGTA-T--T-AAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATAT
gi|21 : ATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA---AAGAGA-------ACCCT--A---AAGC-TTAGTA-T--T-AAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATct
gi|22 : T-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA--------AAG-GAGAACCCT--A---AAGC-TTAGTA-T--T-AAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATct
gi|23 : C--AAA-GGTCAA-GGTC-ACTATGGAACTTCATAGAAA------AAG-----CTC-----AAGGAC-TTT---------CATTGCA-AGGGGATATTCCCCGTCTGGTAGAGTTCTTGTTct
gi|24 : cC--AAA-GCTCAA-GGTC-AC------------------------AAA-----CCT-----GTAGAC-ACA---------CATTGCA-TGAGGATAAACCCCACCTTGCCAATCTCTg
gi|25 : acagagaaacaatggataT--ACTTTATTGATTTTGATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TTAAGAAAGA-AAAAA
gi|26 : G-----TAGACTTT-G-------TTGCTCAAGTT--G-TAGAACCCT--GTT-GATT-TTGGGG-T--T-CATA-AG-TC---AA-GGTCAatatctaatgaaattgtgtggccaaa
gi|3 : TGTG-GCC-TGTTGTGT----AATACTGA--TA----TTGCAGGCACTCTACATGCCAC-CTT-TAT--ATTTGATTGGTTT-GATACTTTGAATGCA-----CCGG-----TAG---TT-G-------TTA-TCAAGAGAGG-AA-AATCCTGAATT-TATT-TTGGGGGT--C-AATA-GG-TC--AAATGATTAT-AGTT-CCTGTGATACTTTTTGGAGA------AAG-----CTT-----GTAAGC-ACT---------CATTGCG-ATGAAATATGTTTTGCCTTGCGG
gi|4 : cccctcgccatttattgtgagaggggacataccggtagttgTGG--TGAG-CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-------T---------------AAAATGCT--ATT-GAAT-TTGG---T--T-CAAA---------AA-GATCAT-AGTC-ATTATGGAACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------GATTGCA-AGGGGATAAACCCTGACTAGCAGAGCACTTtg
gi|5 : tctccttgtaattgattgtgagaggggaaatactaacgggaccattcgggtgtggatatatttTGG--TGAG-CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-------T---------------AAAATGCT--ATT-GAAT-TTGG---T--T-CAAA--------AAA-GATCAT-AGTC-ATTATGGAACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------GATTGCA-AGGGGATAAACCCTGACTAGCAGAGCACTTc
gi|6 : tctccttgtaattgattgtgagaggggaatactaacgggaccattcgggtgtggatatatttT-TTT--GCTTAATTGATTT--------------CA-----TATA-----TAG-CTTT-G-------TTA-TCAc
gi|6 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaaTAGAAA------AAG-----CTT-----GCAGAC-ACT---------CCTTGTG--GGGGGTATTCCCCACCTTGTGGAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagaaaaagcttgcagacactccttgtggggggtattccccaccttgtggagcc
gi|7 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaattttgcttaattgatttcatatatagctttgttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGTGAGAGATGTAGTGTCCGAAACAGT---------CTTGT---CTGTCTGCAGGCCACTTTT-TTTT-GCTCAGTTGAGTC-AATACAT------TA-----CATG-----TAG-CTTT-G-------TTA-TCAAATAAGG-AAGAATCCT--TTT-GATT-TTTGGG-T------------CC--AAA-GGTCAA-GGTC-A-TATAGGACTTCTTA-CAG------AAG-----CTT-----ATATTT-ACTGATTGTGTACATTACA-AGGG---ATGTCCTACTTTTTAGAGCTTTTGTTc
gi|8 : tcatgcaattcatTGTGAATG-AGTGTT--------CATTGT--TGAG-CTTGTAGACCCTCTCTAGTCCGCGTGT-TAT--GATCGATCAATTT-GATATTT------CA-----TACG-----TTG-CTCT-C-------TTG-TCAAAAGAGG-GAGA------------ATT-TCGCCG----T-AAAA-AG-TC--AAA-GGCTAA-GGTCGA--ACGGGACTTCGTAAAAgtt
gi|9 : tttttatcctctcgcaattttttgtgagaggggacatggtgatgggctcgtttcctatgtgtgtggataaggcTGCGAGTG-TATGGTGT----AACAGTGCC-TG-G-CTTGTAGACTCTCCACAGGGCACATTT-TGT--ACTCTATTGATTT-GATACTT------CA-----CAAG-----TAG-CTTT-G-------TTA-TCATAAGAGG-AAGAACCCG--AAT-GATT-CTGGGG-T--TAAAAA-GG-TC--AAA-GCTAAA-GGTC-ATTACAGGACATTATAGAAA------TAG-----GTT-----GTAGAC-AGT---------TGGTGCA-AGGGGGTATACCTTGCCTTGCGGAGCTCCTGTTg
blockSeqs : A A A CCGA GTGAG A AT TG T TGAATG TGTCA ATGTG A T TTCATTT CTC GGGA GAATTT T C GGTCCTA AG C GA T A T G GT CCCACC TTGAA ATAAT A . GATTGTGTA TGT T
blockSeqs : A . G . GTGAG . T TA . AGTA . GT . . T TC GGA ACTAG T . GGGTCA G . . T G . . CT . . . A . . CC G
blockSeqs : A . G . TTGAG . . CG . . . . . . . TC TCA AATTG T . GGTTAA G . . . A . . CT . . . A . . CT G
blockSeqs : . T . CCTGG . . CC . . . . . . . TC GGG ATTTA T . GATTA G . . . A . . GG . . . A . . CA C
blockSeqs : . G . ATA . . CC . . . . . . . TG GGC ATTG T . AATCC G . . . T . . TT . . . A . . TG G
blockSeqs : . . . AT . . CA . . . . . . . TC GGA GTTG T . ATTTA G . . . G . . GG . . . A . . AG T
blockSeqs : . . . TT . . . . . . . TC GGA ATTG T . GGTTA G . . . T . . GG . . . G . . GG A
blockSeqs : . . . TG . . . . . . . TC AGA GTTG G . TATTA G . . . T . . GG . . . A . . AG G
blockSeqs : . . GA . . . . . . . TT GAA ATTG T . TATTA G . . . T . . CT . . . A . . AG A
blockSeqs : . . GA . . . . . . . TC GAA ATTG G . TATTA A . . . T . . CT . . . A . . AG A
blockSeqs : . . TA . . . . . . . TT AGG TTTG G . GGTTC G . . . T . . CT . . . A . . CA T
blockSeqs : . . CA . . . . . . . TC GAA AATG G . GGTT A . . . G . . CT . . . A . . CA G
blockSeqs : . . CG . . . . . . . TC GGA ATG T . AGTT G . . . C . . CT . . . A . . CG A
blockSeqs : . . CT . . . . . . . TC GGA ATC T . CGTA . . . . G . . CT . . . A . . CA .
blockSeqs : . . G . . . . . . . TC GGG AA A . TTC . . . . A . . CA . . . . . . CA
blockSeqs : . C . . . . . . . TC GGA AA A . TTC . . . . A . . T . . . . . . TG
blockSeqs : . . . . . . . T GT AA T . GGT . . . . A . . . . . . . . . CA
blockSeqs : . . . . . . . . . AA T . A . . . . G . . . . . . . . . CA
blockSeqs : . . . . . . . . . G T . A . . . . G . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . .
blockSeqCons : NTG***** ***** CG*
originalCons : TGTGAGTG-TGTGGTGT----AACAGTGN--TG-G-CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATT-TTGGGG-T--T-AAAA-GG-TC--AAA-GNTCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
finalCons : TGTGAGTG-TGTGGTGT----AACAGTGNTG-----CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATT-TTGGGG-T--T-AAAA-GG-TC--AAA-GNTCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
Alignments
lowQualScore : 111111111 333333333 11111 1111111 111111111
lowQualScore : 3 5 222222222 444444444 0 2 0 55 66 1 999999 44444 00000 1 1 7777777 333 3333 3333333 1 1 333333333 44 1 22 3 2 2 2 0 44 0 555555 55555 55555 2 2 888888888 333 4 0
lowQualScore : . . ......... ......... . . . .. .. . ...... ..... ..... . . ....... ... .... ....... . . ......... .. . .. . . . . . .. . ...... ..... ..... . . ......... ... . .
lowQualScore : 2 0 000000000 666666666 2 5 4 66 00 9 111111 55555 44444 7 7 4444444 555 0000 3333333 0 8 333333333 11 9 33 5 3 0 0 7 00 1 888888 00000 33333 1 1 444444444 777 3 2
consensus : TGTGAGTG-TGTGGTGT----AACAGTGN--T--G--CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATT-TTGGGG-T--T-AAAA-GG-TC--AAA-GNTCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
Reference ( family-445 ) : TGTGAGTG-TGTGGTGT----AACAGTGN--T--G--CTTGTAGACACTCTACAGGCCACATTT-TTT--GCTCGATTGATTT-GATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TCAAGAGAGG-AAGAACCCT--ATT-GATT-TTGGGG-T--T-AAAA-GG-TC--AAA-GNTCAA-GGTC-ACTATGGGACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------CATTGCG-AGGGGATATGCCCCGCCTTGCGGAGCTCTTGTT
gi|1 : GTG-TGTGG-------AAAAGTACACT--GGACTTATTGACAATTTACAAACCACATTT-T----GCTTGATTGATAG-GATACTT------TA-----CATGATTG-TAG-CTTT-G-------TTA-TCAAGAGCGG-AAGAACCCT--GTA-AATG-TAGGGG-T--G-GAAA-GG-TC--AAA-
gi|10 : gtgtgtggtttgtttattatcccctcacaattcattgtgagaggcgatatactatagtaaagggaccattcGTG-CGTG-TGT----AACACTGA--T-----CTTGTAGACAATCAACAGGTCGCATTT-TTT--GCTTGATTCATTA-GATACTT------C---------G-----TA-----------------A-TCAAGAGAGG-AAGAACCAT--ATT-GATT-TTAGGG-T--T-----------------------------ACTATGGGACTTGATAGAAC------AAG-----tcatgagctagaaatagatgtattaaagttttaatattttaaattattttgtagattccagagga
gi|11 : aaattttactgtatttgagtgttatgatatcccctcgcaattcattgttgggggagataacaacaccgttcgtgcatggaaataactctTG-TGTAATGT----TACAGTG-----------TGTAGACACTTTATAAGCCAAATTT-TTT--GCTTACTTGATTT-GATACTG------CA-----CATA-----TGG-CTTC-GTTCATTTTTA-TCCAAAGGTC-AAGGTCACT--ACTAGATTCTTAG--------AAAA-GGCTC--ATA-GACC
gi|11 : agtaataagactaatcgtgtataggactataggtttatatttC--AAA-GGTCAA-GGTC-ACTACTAGA-TTCTTAGAAA------AGG-----CTC-----ATAGACCGCT---------TAGTG-----GGGATATGTCCCATTTTGCAAAGCTC-TGTTgcttagtggggatatgtcccattttgcaaagctctgttt
gi|12 : agtaataagactaatcgtgtataggactataggtttatattttgtgtaatgttacagtgtgtagacactttataagccaaattttttgcttacttgatttgatactgcacatatggcttcgttcatttttatcTGCAGGCACTAGACAGACCAGGTTTATTT--TCT-GATTGATTT-AACACTTAGTA--TA-----CATAGT---TAG-CTTT-G-------TTA-TCAAGAGTGG-GAGAAAC----------TT-CTGGAG-T--T---------TC--AGATGAACAATGGTT-GCTAGGGGAGTTTGTAGAAA------AAGTTGAACTT-----CAAGAC-ACT---------CCTTGCC-AGGGGAT-TTCCCCACCTT-CCCAGCTCCTGt
gi|13 : aATACGT------CA-----CACG-----TAG-CCAT-G-------TTA-TGAAGATAGG-CGGTACCCT--GTT-GATT-T
gi|14 : CTATATAGGCCACATTT-TTTATGCTC-----ATT----------------A-----CATG-----TAG-CAAT-G-------TTA-T--ACAGAGG-AAGAACCCT--A-T-GA---------------AAAG-GA-TTGAAAA-TATCAA-TATC-ACTATAGGACTTCATAGAAA------AAG-----CTT-----GTATAC-AGT---------CATTACT-AAGGGATATGCCCTGCTGTGCAGACCTCTTGTTgactcctaagggggtgtgtagaccgcagatttaaataaatctgtatttagatcaattagatatttatattcacagattgtctactttgcgaagggatgtcctgcctttcggaactctttttgttctct
gi|15 : ctACAGTC-TTC--GCTCGATTGTTAT-CATACTT------AT-----CACG-----TAG-CGTT-GT------TTA-TCAAGAGAGG-AAGAACACTA-ATT-GATC-TAGGGG-TCCT-AAA---G-TC--AAgat
gi|16 : taatcccctcgaaattcattacgacacgggatatacaaatgtagtaacgggtgcgcgcgcgcttgtgtgaatgagTT-TTT--GCACCATTGATTT-CATACTT------CATGTCACATGATGTGTAG-CTTC---------TTA-TCAAAAGGGGGAAGAACCCT--ATC---------------------------C--AAA-GTTTAA-TGTC-ACT--------TCTTAGAAA------AAG-----TTT-----GTAGAC-ACC---------CATTGTGTGGGGGATATGCCCGGACTTGTGGAGCTCTTGCTg
gi|17 : T-TTT--GCTCCGTTGATGT-CATATTT------CA-----CATG-----TAA-CTTA-G-------TTA-TCAACAGAAG-AAGA-----------GTTT-TTGGGA-T--T-ATAA-GG-TT--CAA-GGTGAA-GGTC-AGTATGGG-------------------AG-----CTT-----GTAGAT-ACT---------GATTGCA-TGGGGATATCCTCCACCTTGTGGAGCT
gi|18 : A-TTAAGAGAGA-AAGAAATAT--ATTTAATT-ATGGAA-T--C-CAAA-GG-TC--AA-----TAA-GGTC-AGTACTGGACTTCATGGAT---------G-----CTTATAATGTAGAC-ATC---------CATTGTG-AGGGG--ATGTCCTGCCTATTGGAACTCTTt
gi|19 : ctttcttttcaATAT-GATACTT------CA-----CATG-----CAG-CTTTTG-------TTA---AAGAGA------AACCTT--A---AAGC-TTGTAT-T--T-AAAAAGG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------A-------CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATttggttt
gi|2 : --CTTGTAGACATTCTACAGGCCAAATTT-TAT--GCTCAGTTGATTT-GATACTT------TA-----CATG-----TAC-ATAT-T-------TTA-TCAGTAGAGA-AATCTCCCT--ATT-GATT-TTGGGG-T--T-AAAA-GG-TC--TAA-AT---G-GGGC-TTTAT-TGATTTAAAAAAAACCCACCAAA-----CTT-----GCAGAC-ACT---------TATTGGG-AGGGGATAT-CCCTGCCTTGCGTAGCTCctt
gi|20 : tgggatacatgtctgtgtagggtctttttatctcctggcaattcattgtgagggggataaagtgacaccaatATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA---AAGAGA-------ACCCT--A---AAGC-TTAGTA-T--T-AAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATAT
gi|21 : ATAT-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA---AAGAGA-------ACCCT--A---AAGC-TTAGTA-T--T-AAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATct
gi|22 : T-GATACTT------CA-----CATG-----CAG-CTTT-G-------TTA--------AAG-GAGAACCCT--A---AAGC-TTAGTA-T--T-AAAA-GG-TC--AAA-GTTCAA-GGTC-ACTGTGGGAGGTCATAGAAA------AAA-----CTT-----GC--AT-AGT---------TATCAAG-AGAGTATATct
gi|23 : C--AAA-GGTCAA-GGTC-ACTATGGAACTTCATAGAAA------AAG-----CTC-----AAGGAC-TTT---------CATTGCA-AGGGGATATTCCCCGTCTGGTAGAGTTCTTGTTct
gi|24 : cC--AAA-GCTCAA-GGTC-AC------------------------AAA-----CCT-----GTAGAC-ACA---------CATTGCA-TGAGGATAAACCCCACCTTGCCAATCTCTg
gi|25 : acagagaaacaatggataT--ACTTTATTGATTTTGATACTT------CA-----CATG-----TAG-CTTT-G-------TTA-TTAAGAAAGA-AAAAA
gi|26 : G-----TAGACTTT-G-------TTGCTCAAGTT--G-TAGAACCCT--GTT-GATT-TTGGGG-T--T-CATA-AG-TC---AA-GGTCAatatctaatgaaattgtgtggccaaa
gi|3 : TGTG-GCC-TGTTGTGT----AATACTGA--T--A---TTGCAGGCACTCTACATGCCAC-CTT-TAT--ATTTGATTGGTTT-GATACTTTGAATGCA-----CCGG-----TAG---TT-G-------TTA-TCAAGAGAGG-AA-AATCCTGAATT-TATT-TTGGGGGT--C-AATA-GG-TC--AAATGATTAT-AGTT-CCTGTGATACTTTTTGGAGA------AAG-----CTT-----GTAAGC-ACT---------CATTGCG-ATGAAATATGTTTTGCCTTGCGG
gi|4 : cccctcgccatttattgtgagaggggacataccggtagttgGTGA-----G--CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-------T---------------AAAATGCT--ATT-GAAT-TTGG---T--T-CAAA---------AA-GATCAT-AGTC-ATTATGGAACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------GATTGCA-AGGGGATAAACCCTGACTAGCAGAGCACTTtg
gi|5 : tctccttgtaattgattgtgagaggggaaatactaacgggaccattcgggtgtggatatattttgGTGA-----G--CTTGAAGACACTCTAAAGGCCTTATTT-TTC--GCTGAATTGATTT-GATACTT------CA-----CATG-----TAA-CTAT-G-------T---------------AAAATGCT--ATT-GAAT-TTGG---T--T-CAAA--------AAA-GATCAT-AGTC-ATTATGGAACTTCATAGAAA------AAG-----CTT-----GTAGAC-ACT---------GATTGCA-AGGGGATAAACCCTGACTAGCAGAGCACTTc
gi|6 : tctccttgtaattgattgtgagaggggaatactaacgggaccattcgggtgtggatatattttgGTA-TGTT-TGT----GATAATGA-----G--CTTGTA-------TACAA--------T-TTT--GCTTAATTGATTT--------------CA-----TATA-----TAG-CTTT-G-------TTA-TCAc
gi|6 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactgTAGAAA------AAG-----CTT-----GCAGAC-ACT---------CCTTGTG--GGGGGTATTCCCCACCTTGTGGAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagaaaaagcttgcagacactccttgtggggggtattccccaccttgtggagcc
gi|7 : atccccttgaaattcattgtaagaggagatatagatagtagaccattcatatatgggtgtcactgagtactggtatgtttgtgataatgagcttgtatacaattttgcttaattgatttcatatatagctttgttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGTGAGAGATGTAGTGTCCGAAACAGTCT--T--G--TCTGT-------CTGCAGGCCACTTTT-TTTT-GCTCAGTTGAGTC-AATACAT------TA-----CATG-----TAG-CTTT-G-------TTA-TCAAATAAGG-AAGAATCCT--TTT-GATT-TTTGGG-T------------CC--AAA-GGTCAA-GGTC-A-TATAGGACTTCTTA-CAG------AAG-----CTT-----ATATTT-ACTGATTGTGTACATTACA-AGGG---ATGTCCTACTTTTTAGAGCTTTTGTTc
gi|8 : tcatgcaattcatTGTGAATG-AGTGTT--------CATTGT--T--GAGCTTGTAGACCCTCTCTAGTCCGCGTGT-TAT--GATCGATCAATTT-GATATTT------CA-----TACG-----TTG-CTCT-C-------TTG-TCAAAAGAGG-GAGA------------ATT-TCGCCG----T-AAAA-AG-TC--AAA-GGCTAA-GGTCGA--ACGGGACTTCGTAAAAgtt
gi|9 : tttttatcctctcgcaattttttgtgagaggggacatggtgatgggctcgtttcctatgtgtgtggataaggcTGCGAGTG-TATGGTGT----AACAGTGC--CTGG--CTTGTAGACTCTCCACAGGGCACATTT-TGT--ACTCTATTGATTT-GATACTT------CA-----CAAG-----TAG-CTTT-G-------TTA-TCATAAGAGG-AAGAACCCG--AAT-GATT-CTGGGG-T--TAAAAA-GG-TC--AAA-GCTAAA-GGTC-ATTACAGGACATTATAGAAA------TAG-----GTT-----GTAGAC-AGT---------TGGTGCA-AGGGGGTATACCTTGCCTTGCGGAGCTCCTGTTg