lowQualScore : 4444444444444444444444 222222 11111
lowQualScore : 4 999999 1111111111111111111111 666 666666 33 2 1 22 1 1 9 88888 1 1 1 1 1
lowQualScore : . ...... ...................... ... ...... .. . . .. . . . ..... . . . . .
lowQualScore : 0 555555 2222222222222222222222 999 111111 44 0 7 22 6 6 2 55555 8 9 9 9 9
consensus : AACTGTG-ACCG---G--TGAA----CGC-AC-GCA-GAC---CGCACGG---TGA-AC--CGC--ACG-G-AAAA--A-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGG
Reference ( gi|16 ) : AACTGTG-ACCG---G--TGAA----CGC-ACTGCA-GAC---CGCACGG---TGA-AC--CGC--ACG-G-AAAA--A-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGG
gi|4 : AACTGTGTACCG------TGACT---CGC-ACT-CACGAC----GCACGG---TGA--C--CGC--ACG-G-AAA-----T-GGTTAAA----G-TAG-AA-CGT-TATCAGGG
gi|5 : acgtctgaccgcgcaacgagtgccgcacctagacgcaaAACTGTG-AACA---G--TGAG---------------------CGCACGG---TGA-A---CGT--ACG-G-AAAA--A-T-GGT-CAA----G-TAA-AA-AGT-T-TCAGGGa
gi|6 : aagctgaacgaacggtgaatgcgagtggtctgtgaacggtgatagcaaAACTGTA-GACG---G--TGAA----CGC-ACAG-A-GA----CGCATAG---TAA-A---CGG--ACC-G--AAA--A-T-GGGAAA-------TAG-AA-CAT-T-CCAAGGa
gi|21 : tggatgcacggcgaacgcgaggtgaacggtgaacgtaaAACTGTG-ACCG---G--TGA------------------C---CGCACGG---TGA--C--CGC--ACG-A-AAAA--A-T-GGact
gi|15 : ACTGTG-AC-G---G--TGAC----CGC-AC-GCGTGACTCCCGAACG----TGA--C--CGCCAGCGTA-AAAA--A-T-GGTAAAG----A-TAG-AC-CGT-T-TCAGGG
gi|9 : ACGGTG-ACCGCACGC-TGAA----CGC-ACGGT--GAC---CGCACCC---AGA-ACACTGC--ACA-G-AAAA--T-T-GA-AAAATACCG-TAG-AA-CGT-T-TCAGGGac
gi|8 : aatgaagaatgactgaacacTGTG-AACG---G--TGAA----CAC-AGAACA-G-----TGAACGG---CGA-GC---GC--ACG-G-AAAA--A-T-GGT-GAA----G-TAaat
gi|10 : aaatgactgaacggtgaacgctttgtgaacggtgaacgcgatgagaggttGTG-ACCG---G--TGAA----CGC-AC-GGA-GAA---CAAACGG---TGA-ACG-TGC--GCT-G-AACA--A-T-G
gi|3 : tgactgcacgctgaacgcaatttgTG-AACG---G--TGAG----CTA-AC-GCA-GAG---CGCACGG---TGA--T--CGC--ACG-G-AACA--A-TTGGTAAAG----G--AG-AA-CGT-T-TCAGGGaatgaagaatgactgaacacacggtg
gi|12 : atgactgaacgctgaatgaactgtaatcgcgcgctgaacacaaaacG-ACCG---GATTGAATACCCGCCACGGTG-AAC---CGCACCTCCCTGACAA--CGC--ACG-GAAAAA--A-T-GGT-AAA----G-AAA-AA-CGTCT-TCAGGGac
gi|2 : taccCG---G--TGAG----CGC-AC-ACA-AAG---CATACAG---TTA-GC---GA--ACG-G-AAAA--A-T-GGTAAAact
gi|11 : aaagaatgaccatatggtgagcgtgtgatgtatgttttgtgaatggtgaacgtaaaactgagcggagagcacaCA-G-C---CGCACCG---TGA--C--CGC--ACG-G-AAAA--ATT-GGT--AA----GTTAG-AA-CGT-T-TCAGGGgt
gi|18 : cgtgacgcacgtgaccgcaaaaaacatctacctggtgac-GAC---CACACGG---TGA--C--CAC--ACG-G-AAAA--A-T-GGT-AGA----G-TAG-AA-CGT-T-TCAGGGact
gi|20 : -GAC---CGCACGGC--TGA-A---CGC--ACG----AAA--A-T-GGT-AAA----G-TAT-AA-CGT-T-TCAGGact
gi|14 : -GAA---CGCACGA----GA-AC-------ACT-G-AAAAAAA-T-GGT-AAA----G-TGG-AAGCGT-T-TCAGGGac
gi|19 : gcgtgacacaatgaatgaaaaatgatctgcct---CGCATTG---TGC-AC---GA--ACA-G-AAAA--A-T-GATAAA-----G-CAG-AA-CGT-T-TCAGGGactg
gi|23 : agCG-G-AAAA--A-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGGGac
gi|22 : CG-G-AAAA--A-T-GGTAGA-----G-TAG-AA-TGT-T-TTAGGGact
gi|25 : G-G-AAAA--A-T-GGCAAA-----G-TAG-AA-CAT-T-TCAGGGactgt
gi|26 : -G-AAAA--A-T-GGTAAA-----G-TAG-AA-CTT-T-TCAGGGact
gi|28 : -AAAA--A-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGGactg
gi|27 : -AAAA--A-T-GGTAAA-----G-TAG-AA-CGT-C-TCAGGGaagtgt
gi|29 : -AAAA--A-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGattgt
gi|17 : -AAAA--A-T-GGT-AAA----G-TAGAAA-CGT-T-TCAGGGcgactg
gi|24 : aAAA--A-T-GGTAAA-----G-TAT-AA-CGT-T-TCAGGGacttgtaattgatagaaaactat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TGAACGGTGAACTCAAGCGGCGAGCAAGTGATTTATAAACGCTTTGTGAACGGTGAACTCGAGCGGTTGGCAAACAGCGAACGCAAAACTGTAAACGGAGAGCACACGGTTAAATGCAAGTAAAACGCAAGCTGAGCGAATGGGAAAGTA
Unaligned ( gi|7 ): CAGTGAATGCACGGTGAGCAAATGATGAACTTTTTGTTAATGGTAAACACAGGCAGTTGGTGAATACAAAACTGTGAACAGAGAGCGCATGGAGAATGAACAGTGAA
Unaligned ( gi|13 ): TGAATGGCGGGCGCAAGGCGAGCGAACGCTCAAAACATTGTGAACGGTAAACACGAGCAGTTGATGAACAGTGCACACAATATTGTGA
Alignments
lowQualScore : 11111111111 33333333333333333 11111
lowQualScore : 4 1 66 0 33333333333 0 2 44444444444444444 33 1 1 1 1 8 77777 1 1 1 1 1
lowQualScore : . . .. . ........... . . ................. .. . . . . . ..... . . . . .
lowQualScore : 4 1 88 8 33333333333 7 4 11111111111111111 22 9 6 5 5 4 33333 7 8 8 8 8
consensus : AACTGTG-ACCGGTGAA-CGCAC-GCA-GAC---CGCACGG-TGA-------------AC-CGC--ACG-G-AAAAA-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGG
Reference ( family-437 ) : AACTGTG-ACCGGTGAA-CGCAC-GCA-GAC---CGCACGG-TGA-------------AC-CGC--ACG-G-AAAAA-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGG
gi|10 : GTG-ACCGGTGAA-CGCAC-GGA-GAA---CAAACGG-TGA-------------ACGTGC--GCT-G-AACAA-T-G
gi|11 : tgactgcacgctgaacgcaatttgCA-G-C---CGCACCG-TGA--------------C-CGC--ACG-G-AAAAATT-GGT--AA----GTTAG-AA-CGT-T-TCAGGGaatgaagaatgactgaacacacggtg
gi|12 : cgtgacgcacgtgaccgcaaaaaacatctacctggtgacCGGTGAA-C---C-GCA---C---CTCCC---TGAC------------AA-CGC--ACG-GAAAAAA-T-GGT-AAA----G-AAA-AA-CGTCT-TCAGGGact
gi|14 : taccgaccggattgaatacccgccaTGAA-CGCAC-G-A-GA-----ACAC---TGA-------------A-------------AAAAA-T-GGT-AAA----G-TGG-AAGCGT-T-TCAGGGact
gi|15 : gcgtgacacaatgaatgaaaaatgatctgccACTGTG-AC-GGTGAC-CGCAC-GCGTGACTCCCGAACG--TGA--------------C-CGCCAGCGTA-AAAAA-T-GGTAAAG----A-TAG-AC-CGT-T-TCAGGGactg
gi|16 : AACTGTG-ACCGGTGAA-CGCACTGCA-GAC---CGCACGG-TGA-------------AC-CGC--ACG-G-AAAAA-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGGac
gi|17 : -AAAAA-T-GGT-AAA----G-TAGAAA-CGT-T-TCAGGG
gi|18 : a-GAC---CACACGG-TGA--------------C-CAC--ACG-G-AAAAA-T-GGT-AGA----G-TAG-AA-CGT-T-TCAGGGacttgtaattgatagaaaactat
gi|19 : ---CGCATTG-TGC-------------AC--GA--ACA-G-AAAAA-T-GATAAA-----G-CAG-AA-CGT-T-TCAGGGact
gi|2 : agCGGTGAG-CGCAC-ACA-AAG---CATACAG-TTA-------------GC--GA--ACG-G-AAAAA-T-GGTAAAac
gi|20 : aaagaatgaccatatggtgagcgtgtgatgtatgttttgtgaatggtgaacgtaaaactgagcggagagcaca-GAC---CGCACGGCTGA-------------A--CGC--ACG----AAAA-T-GGT-AAA----G-TAT-AA-CGT-T-TCAGGgt
gi|21 : AACTGTG-ACCGGTGA--------------C---CGCACGG-TGA--------------C-CGC--ACG-A-AAAAA-T-GGac
gi|22 : CG-G-AAAAA-T-GGTAGA-----G-TAG-AA-TGT-T-TTAGGG
gi|23 : CG-G-AAAAA-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGGGactgt
gi|24 : AAAA-T-GGTAAA-----G-TAT-AA-CGT-T-TCAGGGact
gi|25 : G-G-AAAAA-T-GGCAAA-----G-TAG-AA-CAT-T-TCAGGGactgtag
gi|26 : -G-AAAAA-T-GGTAAA-----G-TAG-AA-CTT-T-TCAGGGact
gi|27 : -AAAAA-T-GGTAAA-----G-TAG-AA-CGT-C-TCAGGGactg
gi|28 : -AAAAA-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGGattgt
gi|29 : -AAAAA-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGaagtgt
gi|3 : TG-AACGGTGAG-CTAAC-GCA-GAG---CGCACGG-TGA--------------T-CGC--ACG-G-AACAA-TTGGTAAAG----G--AG-AA-CGT-T-TCAGGGcgactg
gi|4 : atgactgaacgctgaatgaactgtaatcgcgcgctgaacacaaaacAACTGTGTACCG-TGACTCGCAC-TCACGAC----GCACGG-TGA--------------C-CGC--ACG-G-AAA---T-GGTTAAA----G-TAG-AA-CGT-TATCAGGGac
gi|5 : acgtctgaccgcgcaacgagtgccgcacctagacgcaaAACTGTG-AACAGTGAG-----------------CGCACGG-TGA-------------A--CGT--ACG-G-AAAAA-T-GGT-CAA----G-TAA-AA-AGT-T-TCAGGGa
gi|6 : aagctgaacgaacggtgaatgcgagtggtctgtgaacggtgatagcaaAACTGTA-GACGGTGAA-CGCAC-AGA-GA----CGCATAG-TAA-------------A--CGG--ACC-G--AAAA-T-GGGAAA-------TAG-AA-CAT-T-CCAAGGa
gi|8 : tggatgcacggcgaacgcgaggtgaacggtgaacgtaaTGTG-AACGGTGAA-CACA--GAA-CAG---TGAACGG-CGA-------------GC--GC--ACG-G-AAAAA-T-GGT-GAA----G-TAact
gi|9 : aaatgactgaacggtgaacgctttgtgaacggtgaacgcgatgagaggttCGGTGAC-CGCAC-GCT-GAA---CGCACGG-TGACCGCACCCAGAACAC-TGC--ACA-G-AAAAT-T-GA-AAAATACCG-TAG-AA-CGT-T-TCAGGG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TGAACGGTGAACTCAAGCGGCGAGCAAGTGATTTATAAACGCTTTGTGAACGGTGAACTCGAGCGGTTGGCAAACAGCGAACGCAAAACTGTAAACGGAGAGCACACGGTTAAATGCAAGTAAAACGCAAGCTGAGCGAATGGGAAAGTA
Unaligned ( gi|7 ): CAGTGAATGCACGGTGAGCAAATGATGAACTTTTTGTTAATGGTAAACACAGGCAGTTGGTGAATACAAAACTGTGAACAGAGAGCGCATGGAGAATGAACAGTGAA
Unaligned ( gi|13 ): TGAATGGCGGGCGCAAGGCGAGCGAACGCTCAAAACATTGTGAACGGTAAACACGAGCAGTTGATGAACAGTGCACACAATATTGTGA
Alignments
lowQualScore : 11111111111 33333333333333333 11111
lowQualScore : 4 1 66 0 33333333333 0 2 44444444444444444 33 1 1 1 1 8 77777 1 1 1 1 1
lowQualScore : . . .. . ........... . . ................. .. . . . . . ..... . . . . .
lowQualScore : 4 1 88 8 33333333333 7 4 11111111111111111 22 9 6 5 5 4 33333 7 8 8 8 8
consensus : AACTGTG-ACCGGTGAA-CGCAC-GCA-GAC---CGCACGG-TGA-------------AC-CGC--ACG-G-AAAAA-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGG
Reference ( family-437 ) : AACTGTG-ACCGGTGAA-CGCAC-GCA-GAC---CGCACGG-TGA-------------AC-CGC--ACG-G-AAAAA-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGG
gi|10 : GTG-ACCGGTGAA-CGCAC-GGA-GAA---CAAACGG-TGA-------------ACGTGC--GCT-G-AACAA-T-G
gi|11 : tgactgcacgctgaacgcaatttgCA-G-C---CGCACCG-TGA--------------C-CGC--ACG-G-AAAAATT-GGT--AA----GTTAG-AA-CGT-T-TCAGGGaatgaagaatgactgaacacacggtg
gi|12 : cgtgacgcacgtgaccgcaaaaaacatctacctggtgacCGGTGAA-C---C-GCA---C---CTCCC---TGAC------------AA-CGC--ACG-GAAAAAA-T-GGT-AAA----G-AAA-AA-CGTCT-TCAGGGact
gi|14 : taccgaccggattgaatacccgccaTGAA-CGCAC-G-A-GA-----ACAC---TGA-------------A-------------AAAAA-T-GGT-AAA----G-TGG-AAGCGT-T-TCAGGGact
gi|15 : gcgtgacacaatgaatgaaaaatgatctgccACTGTG-AC-GGTGAC-CGCAC-GCGTGACTCCCGAACG--TGA--------------C-CGCCAGCGTA-AAAAA-T-GGTAAAG----A-TAG-AC-CGT-T-TCAGGGactg
gi|16 : AACTGTG-ACCGGTGAA-CGCACTGCA-GAC---CGCACGG-TGA-------------AC-CGC--ACG-G-AAAAA-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGGac
gi|17 : -AAAAA-T-GGT-AAA----G-TAGAAA-CGT-T-TCAGGG
gi|18 : a-GAC---CACACGG-TGA--------------C-CAC--ACG-G-AAAAA-T-GGT-AGA----G-TAG-AA-CGT-T-TCAGGGacttgtaattgatagaaaactat
gi|19 : ---CGCATTG-TGC-------------AC--GA--ACA-G-AAAAA-T-GATAAA-----G-CAG-AA-CGT-T-TCAGGGact
gi|2 : agCGGTGAG-CGCAC-ACA-AAG---CATACAG-TTA-------------GC--GA--ACG-G-AAAAA-T-GGTAAAac
gi|20 : aaagaatgaccatatggtgagcgtgtgatgtatgttttgtgaatggtgaacgtaaaactgagcggagagcaca-GAC---CGCACGGCTGA-------------A--CGC--ACG----AAAA-T-GGT-AAA----G-TAT-AA-CGT-T-TCAGGgt
gi|21 : AACTGTG-ACCGGTGA--------------C---CGCACGG-TGA--------------C-CGC--ACG-A-AAAAA-T-GGac
gi|22 : CG-G-AAAAA-T-GGTAGA-----G-TAG-AA-TGT-T-TTAGGG
gi|23 : CG-G-AAAAA-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGGGactgt
gi|24 : AAAA-T-GGTAAA-----G-TAT-AA-CGT-T-TCAGGGact
gi|25 : G-G-AAAAA-T-GGCAAA-----G-TAG-AA-CAT-T-TCAGGGactgtag
gi|26 : -G-AAAAA-T-GGTAAA-----G-TAG-AA-CTT-T-TCAGGGact
gi|27 : -AAAAA-T-GGTAAA-----G-TAG-AA-CGT-C-TCAGGGactg
gi|28 : -AAAAA-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGGattgt
gi|29 : -AAAAA-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGaagtgt
gi|3 : TG-AACGGTGAG-CTAAC-GCA-GAG---CGCACGG-TGA--------------T-CGC--ACG-G-AACAA-TTGGTAAAG----G--AG-AA-CGT-T-TCAGGGcgactg
gi|4 : atgactgaacgctgaatgaactgtaatcgcgcgctgaacacaaaacAACTGTGTACCG-TGACTCGCAC-TCACGAC----GCACGG-TGA--------------C-CGC--ACG-G-AAA---T-GGTTAAA----G-TAG-AA-CGT-TATCAGGGac
gi|5 : acgtctgaccgcgcaacgagtgccgcacctagacgcaaAACTGTG-AACAGTGAG-----------------CGCACGG-TGA-------------A--CGT--ACG-G-AAAAA-T-GGT-CAA----G-TAA-AA-AGT-T-TCAGGGa
gi|6 : aagctgaacgaacggtgaatgcgagtggtctgtgaacggtgatagcaaAACTGTA-GACGGTGAA-CGCAC-AGA-GA----CGCATAG-TAA-------------A--CGG--ACC-G--AAAA-T-GGGAAA-------TAG-AA-CAT-T-CCAAGGa
gi|8 : tggatgcacggcgaacgcgaggtgaacggtgaacgtaaTGTG-AACGGTGAA-CACA--GAA-CAG---TGAACGG-CGA-------------GC--GC--ACG-G-AAAAA-T-GGT-GAA----G-TAact
gi|9 : aaatgactgaacggtgaacgctttgtgaacggtgaacgcgatgagaggttCGGTGAC-CGCAC-GCT-GAA---CGCACGG-TGACCGCACCCAGAACAC-TGC--ACA-G-AAAAT-T-GA-AAAATACCG-TAG-AA-CGT-T-TCAGGG
blockSeqs : T C CT GCGTGACTCC C CCGCACCCAGAACACT CA T A T T A ATACC . A G C A
blockSeqs : . C A TGCAGAC . CAAC . . . . . A A . . . . .
blockSeqs : . C A TCACGAC . ACC . . . . . A A . . . . .
blockSeqs : . A C ACAAAG . CC . . . . . A G . . . . .
blockSeqs : . C A GCAGAG . CC . . . . . A A . . . . .
blockSeqs : . A G GAACAG . CC . . . . . A A . . . . .
blockSeqs : . A G GCTGAA . AC . . . . . A A . . . . .
blockSeqs : . A G AGAGA . GC . . . . . A A . . . . .
blockSeqs : A GCAC . AC . . . . . A G . . . . .
blockSeqs : A GAGA . CC . . . . . A A . . . . .
blockSeqs : C C . TC . . . . . A A . . . . .
blockSeqs : . . . CC . . . . . A A . . . . .
blockSeqs : . AC . . . . . A . . . . . .
blockSeqs : . AC . . . . . T . . . . . .
blockSeqs : . GC . . . . . A . . . . . .
blockSeqs : . A . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : NC***************
originalCons : AACTGTG-ACCGGTGAA-CGCAC-GCA-GAC---CGCACGG-TGA-------------AC-CGC--ACG-G-AAAAA-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGG
finalCons : AACTGTG-ACCGGTGAA-CGCAC-GCA-GAC---CGCACGG-TGANC---------------GC--ACG-G-AAAAA-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TGAACGGTGAACTCAAGCGGCGAGCAAGTGATTTATAAACGCTTTGTGAACGGTGAACTCGAGCGGTTGGCAAACAGCGAACGCAAAACTGTAAACGGAGAGCACACGGTTAAATGCAAGTAAAACGCAAGCTGAGCGAATGGGAAAGTA
Unaligned ( gi|7 ): CAGTGAATGCACGGTGAGCAAATGATGAACTTTTTGTTAATGGTAAACACAGGCAGTTGGTGAATACAAAACTGTGAACAGAGAGCGCATGGAGAATGAACAGTGAA
Unaligned ( gi|13 ): TGAATGGCGGGCGCAAGGCGAGCGAACGCTCAAAACATTGTGAACGGTAAACACGAGCAGTTGATGAACAGTGCACACAATATTGTGA
Alignments
lowQualScore : 11111111111111111111 11111
lowQualScore : 4 2 55 77777777777777777777 0 2 1 2 33 333 44 1 6666666666 1 1 6 99999 1 1 1 1 1
lowQualScore : . . .. .................... . . . . .. ... .. . .......... . . . ..... . . . . .
lowQualScore : 0 5 77 55555555555555555555 1 2 0 2 11 333 33 5 5555555555 5 5 4 44444 7 8 8 8 8
consensus : AACTGTG-ANCGGTGAA-CGCA--------C-GCA-GAC---CGCACGG-TGANC-GC--AC---G--G-A----------AAAA-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGG
Reference ( family-437 ) : AACTGTG-ACCGGTGAA-CGCA--------C-GCA-GAC---CGCACGG-TGANC-GC--AC---G--G-A----------AAAA-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGG
gi|10 : GTG-ACCGGTGAA-CGCA--------C-GGA-GAA---CAAACGG-TGAAC-GT--GC---GCTG-A----------ACAA-T-G
gi|11 : tgactgcacgctgaacgcaatttgCA-G-C---CGCACCG-TGACC-GC--AC---G--G-A----------AAAATT-GGT--AA----GTTAG-AA-CGT-T-TCAGGGaatgaagaatgactgaacacacggtg
gi|12 : cgtgacgcacgtgaccgcaaaaaacatctacctggtgacCGGTGAA-C-----------C-GCA---C---CTCCCTG-ACAAC-GC--AC---G--GAA----------AAAA-T-GGT-AAA----G-AAA-AA-CGTCT-TCAGGGact
gi|14 : taccgaccggattgaatacccgccaTGAA-CGCA--------C-G-A-GA-----ACAC---TGAA----------------A----------AAAA-T-GGT-AAA----G-TGG-AAGCGT-T-TCAGGGact
gi|15 : gcgtgacacaatgaatgaaaaatgatctgccACTGTG-AC-GGTGAC-CGCA--------C-GCGTGACTCCCGAACG--TGACC-GCCAGC---GT-A-A----------AAAA-T-GGTAAAG----A-TAG-AC-CGT-T-TCAGGGactg
gi|16 : AACTGTG-ACCGGTGAA-CGCA--------CTGCA-GAC---CGCACGG-TGAACCGC--AC---G--G-A----------AAAA-T-GGTAAAA----G-TAG-AA-CGT-T-TCAGGGac
gi|17 : -A----------AAAA-T-GGT-AAA----G-TAGAAA-CGT-T-TCAGGG
gi|18 : a-GAC---CACACGG-TGACC-AC--AC---G--G-A----------AAAA-T-GGT-AGA----G-TAG-AA-CGT-T-TCAGGGacttgtaattgatagaaaactat
gi|19 : ---CGCATTG-TGCAC-GA--AC---A--G-A----------AAAA-T-GATAAA-----G-CAG-AA-CGT-T-TCAGGGact
gi|2 : agTGTG-AATGGTGAA-CGTAAAACTGAGC-GGA-GAG---CACACGG-TGAGC-GC--AC---A--C-A----------AAac
gi|2 : aaagaatgaccatatggtgagcgtgtgatgtatgtttCGGTGAG-CGCA--------C-ACA-AAG---CATACAG-TTAGC-GA--AC---G--G-A----------AAAA-T-GGTAAAgcatacagttagcgaacggaaaaatggtaaagt
gi|20 : aaagaatgaccatatggtgagcgtgtgatgtatgttttgtgaatggtgaacgtaaaactgagcggagagcaca-GAC---CGCACGGCTGAAC-GC--AC---G---------------AAAA-T-GGTAAA-----G-TAT-AA-CGT-T-TCAGGgt
gi|21 : AACTGTG-ACCGGTGA----------------------C---CGCACGG-TGACC-GC--AC---G--A-A----------AAAA-T-GGac
gi|22 : C---G--G-A----------AAAA-T-GGTAGA-----G-TAG-AA-TGT-T-TTAGGG
gi|23 : C---G--G-A----------AAAA-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGGGactgt
gi|24 : ----------AAAA-T-GGTAAA-----G-TAT-AA-CGT-T-TCAGGGact
gi|25 : ---G--G-A----------AAAA-T-GGCAAA-----G-TAG-AA-CAT-T-TCAGGGactgtag
gi|26 : --G-A----------AAAA-T-GGTAAA-----G-TAG-AA-CTT-T-TCAGGGact
gi|27 : -A----------AAAA-T-GGTAAA-----G-TAG-AA-CGT-C-TCAGGGactg
gi|28 : -A----------AAAA-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGGattgt
gi|29 : -A----------AAAA-T-GGTAAA-----G-TAG-AA-CGT-T-TCAGaagtgt
gi|3 : TG-AACGGTGAG-CTAA--------C-GCA-GAG---CGCACGG-TGATC-GC--AC---G--G-A----------ACAA-TTGGTAAAG----G--AG-AA-CGT-T-TCAGGGcgactg
gi|4 : atgactgaacgctgaatgaactgtaatcgcgcgctgaacacaaaacAACTGTGTACCG-TGACTCGCA--------C-TCACGAC----GCACGG-TGACC-GC--AC---G--G-------------AAA-T-GGTTAAA----G-TAG-AA-CGT-TATCAGGGac
gi|5 : acgtctgaccgcgcaacgagtgccgcacctagacgcaaAACTGTG-AACAGTGAG-CGCA--------C-G---------------G-TGAAC-GT--AC---G--G-A----------AAAA-T-GGT-CAA----G-TAA-AA-AGT-T-TCAGGGa
gi|6 : aagctgaacgaacggtgaatgcgagtggtctgtgaacggtgatagcaaAACTGTA-GACGGTGAA-CGCA--------C-AGA-GA----CGCATAG-TAAAC-GG--AC---C--G------------AAAA-T-GGGAAA-------TAG-AA-CAT-T-CCAAGGa
gi|8 : tggatgcacggcgaacgcgaggtgaacggtgaacgtaaTGTG-AACGGTGAA-CACA----------GAA-CAG---TGAACGG-CGAGC-GC--AC---G--G-A----------AAAA-T-GGT-GAA----G-TAact
gi|9 : aaatgactgaacggtgaacgctttgtgaacggtgaacgcgatgagaggttCGGTGAC-CGCA--------C-GCT-GAA---CGCACGG-TGACC-GC--ACCCAG--A-ACACTGCACAGAAAA-T-TGAAAAATACCG-TAG-AA-CGT-T-TCAGGG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TGAACGGTGAACTCAAGCGGCGAGCAAGTGATTTATAAACGCTTTGTGAACGGTGAACTCGAGCGGTTGGCAAACAGCGAACGCAAAACTGTAAACGGAGAGCACACGGTTAAATGCAAGTAAAACGCAAGCTGAGCGAATGGGAAAGTA
Unaligned ( gi|7 ): CAGTGAATGCACGGTGAGCAAATGATGAACTTTTTGTTAATGGTAAACACAGGCAGTTGGTGAATACAAAACTGTGAACAGAGAGCGCATGGAGAATGAACAGTGAA
Unaligned ( gi|13 ): TGAATGGCGGGCGCAAGGCGAGCGAACGCTCAAAACATTGTGAACGGTAAACACGAGCAGTTGATGAACAGTGCACACAATATTGTGA