lowQualScore : 1111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 3333333 3333333333333333333 1111 22222222 44444444444444444444444444444444444444444444444444444444444444444444444 11111 111 777777777777777777777777777777777777777777777777777777 22 8888888888888888888888888888888888888888888888888 2222222222 55555555555 1 1111111 11111111111111111 3333 77777777777777777777777777777777777777777777777 333333333 1 1 1111 22222222 555555555555555 1 11 1111 1111 77777777777777777777777777777777777777777777777777777777777777777777777777777 222 2 1 22 4444444 5555555555555555555555555555 2222 11 2 1 11 1 2 222 2 2 2 2 1 11
lowQualScore : 2 5 2 5 5 5 2222222 1111111111111111111 66 0 5 4444 5 88888888 5 5 66 8 5 5 5 22222222222222222222222222222222222222222222222222222222222222222222222 1 8 4 99 4 33333 4 111 1 66 888888888888888888888888888888888888888888888888888888 99 777 8 33 3333333333333333333333333333333333333333333333333 66 1111111111 5 5 9 33333333333 2 77 5555555 3 55555555555555555 5555 5 66 5 5 66 33333333333333333333333333333333333333333333333 5 777 555555555 0 5 5 5 0 66 5 1111 888 5 77777777 5 5 777777777777777 0 00 777 1 7 6666 0 888 4 2222 99999999999999999999999999999999999999999999999999999999999999999999999999999 111 5 0 88888 1 1 7 66 66 1111111 5 8 0 2222222222222222222222222222 5 7777 2 4 4 33 3 3 6 1 88 3 2 5 0 555 3 0 0 0 5 88
lowQualScore : . . . . . . ....... ................... .. . . .... . ........ . . .. . . . . ....................................................................... . . . .. . ..... . ... . .. ...................................................... .. ... . .. ................................................. .. .......... . . . ........... . .. ....... . ................. .... . .. . . .. ............................................... . ... ......... . . . . . .. . .... ... . ........ . . ............... . .. ... . . .... . ... . .... ............................................................................. ... . . ..... . . . .. .. ....... . . . ............................ . .... . . . .. . . . . .. . . . . ... . . . . . ..
lowQualScore : 3 7 9 0 0 0 9999999 6666666666666666666 99 8 0 9999 0 44444444 0 0 99 8 0 0 0 88888888888888888888888888888888888888888888888888888888888888888888888 7 9 4 33 4 77777 4 333 8 11 333333333333333333333333333333333333333333333333333333 99 888 9 99 4444444444444444444444444444444444444444444444444 99 1111111111 0 0 5 11111111111 0 55 1111111 0 99999999999999999 4444 0 99 0 6 99 99999999999999999999999999999999999999999999999 0 000 555555555 0 0 0 0 0 99 0 9999 888 0 22222222 0 0 444444444444444 0 33 888 7 1 4444 7 333 4 1111 99999999999999999999999999999999999999999999999999999999999999999999999999999 000 0 0 66666 4 4 9 99 99 0000000 0 8 1 1111111111111111111111111111 7 3333 5 0 2 22 7 3 7 0 55 0 5 5 0 000 0 0 0 0 5 00
consensus : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--CTTTTG--TGA--GTACTGA--TATAA-CGTNTACAGTA-CA------ACTTT-A-GCA--CCTGC-T-G-AAAA-----------TC--C---AATTTTC----A--A------G----GTTTTCT----T--TTTTCCAA---TCAAAGAAAATTTTAA-A-TAA-A-TGAA--NTNACA-GA--TTTCAAGTATCGA--G-------GNA----------------CT-----------T--------------TTAAT-CCA---C-TTTT-GATA--T-CC-C-------A-------GG---CT----C--------------ATC--TTTGTC------GC--A-GCT-TCATCAAGCAAAC---CAANTAGTGTCAGTTCTAGAA------CGTTNATCACAA----C----T-AT----ATATA-CGTCTG-CC--AGCATTG-GATGCAATTTCT--T---------TA----------A--------A---------AA-GCC-TTGCA-AG-T-CTTC-------TCAAC-TTGGAT-CGC-AGTG-T-GCT--C-ACTTTTCTCCACAACTT---TGAA-T-----TT-G-GATT-GTGG---AGA--TA--TTTAAA-TTCAN-AA---TTCNCAAN---TTTCTTTCAATA--ATTCATA-ATGTCCAT----TTTT-------T------T-----C------TCC--AGAAAT-----------------N------------------G-TTC-A-CCTCAT-CAGGATGACATT-TC--T-CAAGGAAATTGTAGTCTT--AGGGA-TATTCT---TG-T-TCCAGCAGACATCTTAATGCAACTCCAAAGGG-TGC-G--AATGGTTTGTCTCCT--CCTGCATCATT-ACCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTNTATTCTCT-CAAGAA-TTCC-AATATGTATGATGGTACGTACGGTATTGCGTTGTAAGNTCTCANCAATAAAGTTCCCCAACCTTTTGTCGGTGTGTTTTAGGACATTTGGAATATTTGTGAGAATTTAGGAGTATTTTTT
Reference ( gi|5 ) : CTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTACGTTGCGAGAGCGGTCTTTTG--TGAATGTACTGA--TATAA-CGTTTCCAGTA-CA------A-TTT-A-GCA--CCTGC-T-G-AAA------------TC--C---AGTTT------A--A------G----GCTTTCT----T--CTTTC------TCAAAGAAAATTTTAA-A-TAA-A-TGAA--TTGACA-GA--TTTCAAGTATCGA--G-------GTA----------------CT-----------T--------------TTAAT-TCA---C-TTT--GATA--C-CC-C-------A-------GG---CT----C--------------ATC--TTTGTC------GC--A-GCT-TCATCAAGCACCC---CCAA-AGTGTAAGTACTAAAA------CGTTAATCACAA----C----T-AT----ATAT--TGTCTG-CC--AGCATTG-GATGCAACTTGT--T---------TA----------A--------A---------AA-GCC-TTGCA-AG-T-CTTC-------T-AAC-TTGGAT-CGC-AGTG-T-GCT--C-ACTTTTCTCCACAACTT---TGAA-T-----T--G-GATT-G------AGA--T---TTTAAA-TTCAA-AA---TTCACAAA---TTCTTTTCAATA--ATTCATA-ATGTCCAT----TTTTT------T------T-----T------TCC--AGAAAT-----------------T------------------G-TTC-A-CCTCAT-CAGGATGA-ATT-TC--T-CAGGGAACTTGTAGTCTT--AGGG--TATTC----T--T-TCCAGCAGCCATCTTAATACAACTCCAAAGGGGTGC-A--AATAGTTTGTCTCCT--CCTGCATCATT-ACCAATTATTGCGTGGTTTCTTCACGAGGGGACACATGGCTACTTTGTTCTCT-CAAGAATTTCC-AATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGATGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTTA
gi|6 : CTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG-TCTTT-G--TGAATGTACTGAACTATAA-CGTTTCCAGTA-CA------A-TTT-A-GCA--CCTGC-T-G-AAA------------TC--C---A-TTT------A--A------G-------TTTT----T--CTTTC------TCAAAGAAAATTTTAA-A-TAA-A-TGAA--TTGACA-GA--TTTCAA-TATCGA--G-------GTA----------------CT-----------T--------------TTAAT-TCA---C-TTT--GATA--C-CC---------A-------GG---CT----C--------------ATC--TTTGTC------GC--A-GCT-TCATCAAGCACC------AA-AGTGTAAGTACTAAAA------CGTTAA-CACAA----C----T-AT----ATATA-TGTCTG-CC--AGCATTG-GATGCAACTTGT--T---------TA----------A--------A---------AAAGCC-TTGCA-AG-T-CTTC-------T-AAC-TTGGAT-CGC-AGTG-T-GCT--C-ACTTT-CTC-ACAACTT---TGAA-T-----T--G-GATT-G------AGA--T---TTTAAA-TTCAA-AA---TTCACAAA---TTCTTTTCAATA--ATTCATA-ATGTCCAT----TTT---------------T-----T------TCC--AGAAAT-----------------T------------------G-TTC-A-CCTCAT-CAGGATGA-ATT-CT--T-CAGGGAACTTGTAGTCTT--AGGG--TATTC----T--T-TCCAGCAGCCATCTTAATACAACTCCAAAGG---GT-C--AATAGTTTGT---CT--CTTGCATCATTAACCAATTATTGCGTGG-TTCTTCACGAGGGGACACATGGCTACTATGTTCTCT-CAAGAA-TTCC-AATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTTCCCCAACCTTTTGTCG-TGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTT
gi|4 : CTGGGGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG---TCTTG--TGA-TGTACTGA--TATA---GTTTCCAGT--CA------ACTTT-A-GCA--C-TGC-TTGCAAA------------TC--TCATAATTTTC----A--A------C----GCTT-CT----T--CTTTT------TCAAGAAAAATTTTAA-A-TAA-A-TGAA--TTCACA-GA--TTTCAAGCATCGA--GAACTTCTGCAACCAAA----------CC-----------T--------------TTAAT-CCA---C-TTTT-GATA--TTCC-C-------A-------GG---CT----C--------------ATA--TTTGTC------GC--A-GCT-TCATCAAGCAAC------AATAGTGTCAGTAT--AAA------CGTTAATCACAA----C----T-AT----ATATA-TGTCTG-CC--AGCATTG-GATGCAACTTGT--T---------TA----------G--------A---------TG---T-TTAAA-AA-G-CTTC-------TCAAC-TTGGAT-CGC-GGTG-T-GAC--C-ACT---CTCCACAACTT---TGAA-T-----TT-G-GATT-G------AGA--TAGATTTAAAATTCAG-AA---TTTACAAA---TTCTTC-----A--ACCC--------CC-----------------C------C-----C------CCC--AGAAAT-----------------TAGCTA-------------G-TTC-AACCTCAT-CAAGATGA-ATT-TC--TTCAAGGAAATTGTAGTCTT--AGGGA-TATTC----TGTT-TCCAGCACACATCTTAATAGAGCTCCAAACGG-TGCCACCAATGGTT-GTCTC-T--CCTGCACCATT-ACCAAATATTGCGTG-TCTCTTCACGAGGGGATACATGACTACTTTATTCTCTCCAATAA-TTCC-AATATGTATGATGGTACGTACGGTATTGCGTatgt
gi|7 : taggcccttccagcaatcgtcttgaagtaccggcacaaattcagttgataaagtcccccagcttctcaatatggatttcacttttaagacgatCTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCAAGAAC------TT-----------CTGA--TATAA-CGTATCCAGTA-CATGTACAA-TTTTA-GCA--CCTGC-T-G-AAAAT----------CC--C---AGTTT---------------------TCTTGGT----T--TTTCCAATT--TCAAAGAAAATTTTAA-A-TAT-A-TGAA--ATCACA-GA-------AGTATCAA--G-------GAA----------------CT-----------TCCGCAGCCAAACATTTAAT-CCA---C-TTTT-GATA--T-CT-CCATACTCA-------GGATCCTGTGTC--------------ATC--TTTGTC------AC--A-GCT-TCATCACGCAAAC---CAAT-AGTGTCAGTTCTAGAT------AGTTCATCATAA----C----T-CT----TTATA-TCTCTG-CC--AGCATTG-GATGCAATTTCT--TTGAAGTGTATA----------A--------A---------AA-GTC-TTGCA-AG-T-CTTC-------TCAAC-TTGGGT-CGC-AGTG-C-GCT--C-AC-TTTCTCCACAACTT---TGAATT-----T--T-GATT-GTGGT--AGA--TA--TTTAAA-TCCAT-AA---TGCCCAAGTTTTTTTTTTCAATA--ATTCATA-ATGTCCAT----TTTT-----------------------------C--AGAAAT-----------------TCATCACTCCTTATAACTAT-TTCAA-CCTCAT-CCGGATGATATTATT--T-CGAGGAAATTGT----TTGGAGGA--TATTCTG--T--T-TTCAGCAGACATCTTAATGCAATTTCGAAGGG---------------TCTCTCCTTGCGTGTCTCCTT-ACGAGGTATT---TG----CTT-ATGA-AGGACACATGACTACAATATTATCT-C
gi|8 : tcgttttgtttgcccatttcccttctcaatgtggctttcactgtaaagacgatCTGGAGCCTCAGGATATAA-TA-TAATATA---ATA---TACGAGAGCG----TCTG--TGA-TGT-CT-A--TATAA-CGTTTAAGATA-AA------A-TAT-A-GCA--C-TGC-T-G-AAA------------TC-------ATAT------A--A------ATATAGATATAT----A--TTTTC--------AAAGAAAATTTTAA-A-TAA-AATGAT--ATAACAAGA--TGTCAAGTATCGA--G-------GAAACTTCTGCAACCAAACCT-----------T--------------CTAATCTCAACTT-TTT--GATA--T-CCTC-------A-------GG---CT-------------------ATA--TTTGTC------GC--A-GCTATCATGCAGCACAC---CAAT-ATTGTCAGTA-TAAAA------CGCTAATCACAT----C----TTAT----ATATAATGTCTG-CC--AGCATTGTGATGCAACTTGT--T---------TA----------A--------AT--------AA-TAA-TAATA-A----CTTC-------TCAACTTTGGAT--GCAAATGCC-GCT--CAAATATTCTCCACAACTT---TAAA-TTTATCT--GTGAT---------AGA--T---TTGAAG-TTCAG-AAATTTTCACAAAT--TTCTTTTC-AT---ATTCATA-AAGT-CATAAAATATAA------T------T-------------------AACT-----------------A------------------G-TTCAA-CCTCATCCAAAATGA-ATT-TCATT-CAAGGAAATT-TAGT-TT--AGGGA-TATTCTGT-T--T-CCCTGCAGACATATTAA
gi|3 : tttgcatgtggaatattcgagttcattcaaatagacatttctacaattatctgttcgcttataagataattagataaagtctctcaggaatatataatatagataataaataaatatatagaagagatCCGGAGC-TC-TGAT-CAT-TTCTG-TGTCG--TTAAGTTGCGAGG-----CTTTT------------TGA--TAAAAACGTT-ATAGTAATA------C-TTT-A-GCA--C-TGC-T-G-AAAATCTATAATTATCC--C---AGTTTTCTCTTA----------------TTTTT----T--TTTTCCAAT--TCAAAGACAATTTTAACA-TA----TGAA--AT-ACA-GA-------AGTATCAA--G-------GAA----------------TTCCGTAACAAACT--------------TTAAT-CCA---C-TTTTTGATA--T-CC-CCATATC-A-------GG---AT----CTGT-----------GTCATTTTGTC------ACC-A-GCT-T-ATCA-GTAAAC---C-AT-ATTGTCAGTTTTAGAT------AGTCA-TCA-AA----C----T-TTTTTTATAT--C-TCTG-CCCAGGCATTG-GATGCATTTCTT--T---------TA----------AGTGTATATA---------AA-GCCCTTGCA-AG-TTCCTC-------A-AAC-TTGGATTCGC-AGTG-T-GCT--C-AACTTTCTTCACAA-TT---TGAA-T-----TTCG-GATT-GTGAAT-AGA--TTA-TTTAAA-TCCAT-A-----TC-CAAT---TTTCTTTCAATATTTTTCATA-ATGTCCAT----TTTTT------TAAGAAAT-----TCATCACTCCTTATAACT-----------------A------------------G-TTC-ATCCTCAT-CAGGATGACATT-
gi|2 : gtgctgtatatatgtgtaatttgagtttacatgttgtttttatatttcatcaaattttcctccactcttttcgtttgcccatttctcactttacatcatcttaataactctgcaaagtgtcaagtcttctgcatctccttcttcttggcattgtataaaagttatctaacatgttagcaaatttcttaattggaaaaaaaaaaaaggtttttaaaaaaaaaaaaaaaactcgagttatttcaagaatagacatttctacaattctctgttcgtttggtttgataaagttcccagcttctcaatatggattcagtattaagacgatGGAGC-TCTGGATACATATT-TG-TCTC---TT-CGTTGCGAGAGC------TT-----------CTGA--TAAAA-CGTATATAGTA-CA------ACTTT-A-TCA--CCTGT-G-A-AAA------------TCGAT---AATTTTCC---A--------------GTTTTCT----TGTTTTTCCAAATATCAAAGACAATTTTAA-AATAT-A-TGAA--GTCACA-GA--CTTTAAGTATCAA--A-------GAA----------------CT-----------T--------------TTAATACCA---C-TTTT-GATA--T-CT-C-------C-------GC---CT----CGAGG----------ATC--TGTGTCTTCTTTGCTCACGCT-TCATCA-GCAAAC-----AATAGTGTCAGTTCTAGAA------CGTTCATCACAGACTTC----T-AA----ATAT--C-TCT---C--AGCATTG-GATACAATTTCTCTT---------TG----------A--------AGTGTATAT-AA-GC--TTGCGCAG-T-CTTA-------TCAACCTTGGAT-CGC-AGTG-TGGCTTCC-AC-TTTCTCCAC-ACTT---TGAA-TTC---T--G-GATT-GTGT---AGATGT---TTTAAA-TTC-T-AA---TGCCCAAT---TTTCTTTCATTG--ATT-ATAGATGTCgt
gi|9 : ctatcacgggcacacttctaataatcagcttgagtttccaatcttgcatgctgggtgaacatgcacaagtctctattttcacatctgcgagcatgtccgtctttcagaaccttctggaaaagaaaaaaccgcggccagttcagccttttttaagagggtaattattgtgcatttgagtttaccatgttgtttttatttttcataaatttcctccctcttttcgtttgccccattttcccacttatcatccttatactctgcaagtgttaaagtttctgcatctcttcttcttgcattgtataaagttaatctacatgttgcatttctctaattggaagtaacctgagttatttcagaatagacatttctacaattctctgtttgtttgtttgataaagtctcccagctttctcaatatggatttcacttttaagacgatatgGC-TCTGGATACAT-TT-TG-TGTC---T-A-GTTGCGAGAGC-----TTT------------TGA--TAAAA-CGTATATAGTA-CA------ACTTT-A-GCAAACCTGC-T-G-AAAA-----------TC--T---A---T------A--ATTTCCCA----GTTTTCTAT--T--TTTTCCAATT-TCAAAGACAATTTTAA-A-TAA-G-T--A--TCAAAG-GAACTTCC--GTAACCA--A---------A----------------CA-----------T--------------TTAAT-CCA---C-TTTT-GATA--T-CC-C-------AATACTCAGG---AT----CCTGTGCCA------ATC--TTTGTC------AC--A-GCT-TCATCAAGTAAAC---CAAT-ATTGTCAGTTCTAGAT------AGTTCATCACAA----C----T-TT----TTATA-TCTCTG-CC--AGCATTG-GATGCAATTTCT--T---------TA----------A--------AGTGTATATGAA-GCC-TTGCA-AG-T-CTTC-------TCAAC-TTGGAT-CGC-AGTG-T-GCT--C-ACTTT-CTCCACAACTT---TGAA-T-----TT-G-GATT-GTGAT--AGA--TA--TTTAAA-TCCAT-AA---TGCCCAAT---TTTCTTTCAATA--TTTCATA-ATGTCCAT----TTTTTAAGAAAT------TCATCAC------TCCTTATAACT-----------------A------------------G-TTC-ATCCTCAT-CAGGATGACATT-GT--T-CAATGAAATTGTAATCTT--GGGG--GATTTTCTGT--T-TTCAGCAGATATCTTAATGCAACTTC----TGATGA-A--CATAATCAG--GCCC--CCTGCATCATT-GGCAAaaaattttaacgaaattcatcctcttataatat
gi|1 : taggacgatccagaGATACAT-TT--G-TCTCGGATTA-GTTGCGAGAGA---CTTCTGGATAAAA--ACTG-----TAA-TAT----AGTA-CA------ACTTT-ATGCA--CCTGCCT-G-AAA------------TCA-T---AATTT------CCCA------G----ATTTTTTGTTGT--TTTTCCAAATTTCAAAGACAATTTTAATA-TGCTA-TGAAGGCCAACA-GA--CTTTATTAATCAAAGG-------GGA----------------CT-----------T--------------GTAAT-CCA---CTTTT--GATGATC-TC-C-------A--------G---CT----CTCAGTCCTGTGTCTATC--TTTGTC------ACTAG-GCT-TCATCATCCGACCAAACCAATAGTGTCAGTTCTAAGATCAGTTCATTCATCACAA----CGTGTT-AA----ATAT--CTCTTGCCC--AGCATTG-GAT-CAATTTCT--T---------TGAAGTGTATATA--------A---------AA-GCCTTTGCA-AGAT-TTTCATTTGCTT-CAC-TT-GAT-CGC-AGTG-TGGCT--C-AC-TTTCTCCACAACTTTTGTGAT-T-----T--G-GATTCGTTGATTAGA--TG--TTTAAATTTCGATGA---TGCCCAAT---TTTCTTTCAATG--ATTCATA-ATGTCatctgcctctt
gi|20 : caagggcaacacttctacataatacagttcagtttcaatctctgcatgctggataacatgcacaaagtacactctactttacaacaaatcttgcgaagccgatgctcctcagtccttcccaagccaccttctagtgtaaagaaaaaaccggcacaagtttgccagctctttttgtagaggagctaagtatatatgtgcatttgagttgtacatgtgtttattatatctttcatcaaaatttccctctccatctctttcgttctagcccatttccccactataatcatccttagtactccttggcagtgtaagtctagttgcatcaaccctttcttgccatttgtaaaagttaatactacaataggttagcaattttctttacaatttgtaaagtaaactcgagttcatttcagaatagacatccttctagcaattctctgttcgtttgggttgataaatgtctcccagcttctcaataatggattttgcactttctaagacgatctcggagttaacctctTC------TCAAAGAAAATTTTAA-A-TAA-A-TGAA--TTGACA-GA--TTTCAAGTATCGA--G-------GTA----------------CT-----------T--------------TTAAT-TCA---CTTTT--GATAT-C-CC-C-------A-------GG---CT----C--------------a
gi|15 : A-AG---TTCAACAA---TGTTTTTCAATA---TTCATA-ATGTGCAT----TTTT-----------------------------C--AGAAATCCATCACTCCTTATAACT------------------ACTTC-AACCTCAT-CAGGATGCCATT-TT--T-CAAGGAAATTGTAGTCTT--GGGGA-TATTC----TG-TGTTCAGCAGACATCTTAATGCAACTCCAAA-TGGTGC-A--A--GGGTTGT---CT--TCTGCGCCATT-ACAAATCCTAGCGT-GTCTCTTCACGAGG
gi|18 : -A-CCTCAT-CAGGATGA-ATT-TC--TTCAGGGAACTTGTAGTCTT--AGGGA-TATTC----TGTT-TCCAGCAGCCATCTTAATACAACTCCAAA-GGGTGC----AATAG-TTGTCT-CT--CCTGCATCATT-ACCAATTATTGCGT-GTTTCTTCACGAGGGa
gi|11 : aAGTCT---AGGGATTATTC----TG-T-TTCAGCAGACATCT-AATACAACTCCAAAGGG-TGC-G--CATGGTT-GTCTC-T--CC-GCATTCTT-ACCAATTATTGCGTG-TCTTTTCACGAGGGGACACATGG-TACTTTTCTCTC--CACGAATTTCCCAATATGGATGATGGTACGTAC-GTATTGCGTTGT--GGTCTCAACAA-AAAGTT-CCCAA-C-TTTGTCGGTGTGTTTTAGGACATTTGGAATATTTGTGAGAA-TTAG--ATATTTTTT
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CCTGAGGAACATCGTTGGAGGGATAATGCGTGCGTAATGTCTCATTCTTGTCGTGAATATTAATTGAATTTCAGCTTGATCACGGGCACACCCTCTACAAATCAGTTGAGTTTCCAATCTTTTGCATGCTGGGATGAACATGCACAAGTCTCTATTTTCAACATCTTGCGAGCATGTCCATCCTTTCAGCCAACCTTCTGGAAAAGAAAAACCCGGGCAAAGTTCAGCCTTTTTAGATGCTGTATCATATGTGCATTTGAGTTTACATGTTCGTTTTATGATTTCATAAAAATTTCCTCCACTTTTTCGTTTGGCCCATTCCCACTTACATCATCCTTATTAACTCTACACGTGTAAGTCTTGCCTGCATCTCCCTCTTCTTGCATTGTATAAAGTTATCTACACATGTTAAGCAACTTTCT
Unaligned ( gi|12 ): CTTGAGGACCACCATAGGAGGGATAATGCGTGCAGACATGTCTCATCTGTCGCTGAATGTTAATTGAATTTTTAGCCTGATCACGGGCACACTTCTACACATTGGGATGAAATGTGCAAGTCCCCTATTTTCAACATCTGCGACCATGTCCAGTCCTCTGGAAGAAGTTCCGGCACAAGTTCAGCCTTTTTAAAGGACTGTAGATATGTGTATTGAGTTTACATGTTGTTTTTATATCTTCATAAAGTTTCACTCGTTTTGTTTGCCCATTTCCCACTTA
Unaligned ( gi|13 ): TTTTCAGCCTGATCGCGGGCACACTTCTACATAATCAGTTGAGTTTCCAATCTTTGCATGTTGGGATGAAATGTGCAAGTCCTCTATTTTCAACATCTGCGAGCATGTCCAGTCCTTTCCACCAATCTTCTGGAAGAAGTTCCGGCACAATTTCAGCCTTTTTAGAGGAATGTAGATATGTGTATTTGTAGATATTTGTATTTGAGTTTACATGTTGTTTTTATATCTTCATCAAGTTTCCCTCCACTCGTTTTGTTTGCCCATTTCCC
Unaligned ( gi|14 ): TCTTGAGGAACATCATAGGAGGGATAATGCGTGCAGACATAACGTCTCATATGTCGCTGAATATTTATTGAATTTTCAGCCTGATCACGGGCACACCTCTACATAATCGGTTGAGTTTCCAATGTTTGCATGTTGGGGTGAACATATGCAAGTCCTTTATTTTCAACATCTGCGGGCTTGTTTAGGCCCTTCCAGCAATCGTCTTGAAGTACCGGCACAAATTCAGTT
Unaligned ( gi|16 ): TTTGGAATACTTTGAGAATTTAGGGAGTTTTTTATGTAAGTTTAAAACGCACACATTCTGTTCTTACGGATCAGAAAGATGCTTGTTAACAAGTTGATAAACGATTAATGTCGCACCTGGTTTCGCAGCAATGACGACACAATGGTCAACAGTACGACGTTGAGCAGCGGACTCATCTCTGGT
Unaligned ( gi|17 ): AATGTCAAGATTAATGTTGCAAATAATGCAACACATGACAATGAATAGGTAATAATAATCCACTTTTGATATCTCAAGACTCAGGATCCTGTGTCATCTTTGTCACCATGCTCATGAAAGCAATAGTGTCAGTTCTAGAAAGTTCAACAATGTTTTTCAATAT
Unaligned ( gi|19 ): TCTTGAGGAAACCGTAGGAGGATAATGCGTGCAGATATAATGTCTCATTCTGTAGATAGATATAGGATATCAGTCTGTCACAAGAGACACCCTCTACATCATCAGTTGAGTTCCCAATATTTGCATGTGGAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 111 7777777777777777777 11111 33333333333333333 555555555555555555555555555 555555555555555555555555555555555555555555555555555555555555555 66666666666666666666666666666666666666666 111111111 111 11111 2 111111 1111 1111 11 666666666666666666666666666666 1111111 1 111 22222 2222 1111 1111111111111111111111111111111111111111111111111 111 1 11 222 222222222222 11 1 1 11 22 2 2 2
lowQualScore : 4 1 4 4 4 222 8 2222222222222222222 66 4 6 11111 4 8 4 66 1 4 888 44444444444444444 4 333333333333333333333333333 0 8 4 77 4 666 4 4 55 5 666666666666666666666666666666666666666666666666666666666666666 3 55 7 3 444 3 77777777777777777777777777777777777777777 55 4 555555555 99 4 111 99999 00000 11 9 0 1 111111 1 0 4 3333 4 2 66 3333 00 4 66 2 999999999999999999999999999999 555 4 4 4 4 4444444 1 8 4 4 4 4 4 4 66 4 4 1 4 4 000 4 4 88888 777 4 1111 4 66 1 777 0 88 8888 2 0000 4 8888 9999999999999999999999999999999999999999999999999 1 777 4 9 4 66 4 4 1 4 333 777 5 444444444444 3 5 66 0 5 55 5 1 6 8 0 0 33 2 7 1 0 1 7 6 6 22 6 3 3 3 7 6
lowQualScore : . . . . . ... . ................... .. . . ..... . . . .. . . ... ................. . ........................... . . . .. . ... . . .. . ............................................................... . .. . . ... . ......................................... .. . ......... .. . ... ..... ..... .. . . . ...... . . . .... . . .. .... .. . .. . .............................. ... . . . . ....... . . . . . . . . .. . . . . . ... . . ..... ... . .... . .. . ... . .. .... . .... . .... ................................................. . ... . . . .. . . . . ... ... . ............ . . .. . . .. . . . . . . .. . . . . . . . . .. . . . . . .
lowQualScore : 4 1 4 4 4 222 9 7777777777777777777 11 4 9 11111 4 4 4 11 1 4 000 22222222222222222 4 999999999999999999999999999 6 0 0 55 0 555 9 0 55 3 999999999999999999999999999999999999999999999999999999999999999 6 00 3 6 111 6 55555555555555555555555555555555555555555 55 0 999999999 55 0 000 44444 00000 44 7 8 4 555555 0 8 0 9999 9 3 11 4444 66 4 11 9 777777777777777777777777777777 777 4 4 4 4 4444444 1 9 4 4 4 4 4 4 11 4 4 9 4 4 888 4 4 88888 888 4 2222 4 11 0 000 6 99 0000 3 3333 0 5555 9999999999999999999999999999999999999999999999999 0 777 4 6 4 99 4 4 9 4 888 000 0 999999999999 4 6 99 1 0 77 3 0 8 0 0 0 88 5 3 0 7 0 3 7 7 00 7 7 7 3 3 7
consensus : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--CTTTTG--TGA--GTACTGA--TATAA-CGTNT-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAA--ATC---TA--ATTTTCNAGGTTT-TCT---------T---TTTTCCAA---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-G--ATTTCAAGTATCGA--G-------------GAA----------------CT-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------A-------GG---CT----C--------------ATC--TT-TGTC------G--C--A-GCT---TCATCA----AGC-----AAACCAA-TAGTGTCAGTTCTAGAA------CGTTCATCACA-AC----TATNT--AT-ATNTCTGCC--AGCATTG-GATGCAACT--TNTTT---------AA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGG--A---GA-T--A-TTT-AAATTC--ANAA---TTCA-CAA---TTTTCTTTCAATA--ATTCATA-ATGTC----CATTTTT------T---------T-------------C--T-CCTTATAAC-----TAGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCT-NTTT--CCAGCAGACATCTTAATACAACTCCAAAGGG-TG---CAAATGGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTTTGTTCTCT-CAA-GAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGTTTTCACCAATAAAGTTCCCCAACC-TTTGTCGGTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
Reference ( family-410 ) : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--CTTTTG--TGA--GTACTGA--TATAA-CGTNT-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAA--ATC---CA--ATTTTCAAGGTTT-TCT---------T---TTTTCCAA---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-G--ATTTCAAGTATCGA--G-------------GNA----------------CT-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------A-------GG---CT----C--------------ATC--TT-TGTC------G--C--A-GCT---TCATCA----AGC-----AAACCAANTAGTGTCAGTTCTAGAA------CGTTNATCACA-AC----TATAT--AT-ACGTCTGCC--AGCATTG-GATGCAATT--TCTTT---------AA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGG--A---GA-T--A-TTT-AAATTC--ANAA---TTCN-CAA---NTTTCTTTCAATA--ATTCATA-ATGTC----CATTTTT------T---------T-------------C--T-CC--AGAAA-----TNGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCT-TGTT--CCAGCAGACATCTTAATGCAACTCCAAAGGG-TG---CGAATGGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTNTATTCTCT-CAA-GAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGNTCTCANCAATAAAGTTCCCCAACCTTTTGTCGGTGTGTTTTAGGACATTTGGAATATTTGTGAGAATTTAGGAGTATTTTTT
gi|1 : C-TCTG-ATACAT-TT--G-TCTCGGATTA-GTTGCGAGAG-A--CTTCTGGATAA--AAACTG-----TAA-----T-----ATA-GTACAACTTTATGCA--CCTGC-CTGAA--ATCA--TA--ATTTCCCAGATTT-TTTGTTG-----T---TTTTCCAAATTT--CAAAGACAATTTTAATA-TGCTA-TGAAGGCCAACA-G--ACTTTATTAATCAAAGG-------------GGA----------------CT-----------T--------------GTAAT-CC--ACTTTT-GATGA-T-CT-C-------C-------AG---CT----CTCAGTCCTGTGTCTATC--TT-TGTC------A--CTAG-GCT---TCATCATCCGACC-----AAACCAA-TAGTGTCAGTTCTAAGATCAGTTCATTCATCACA-ACGTGTTAAAT--AT--CTCTTGCCC-AGCATTG-GAT-CAATT--TCTTT---------GA--------AGTGTATATAAAA-GCC-TTTGCA-AGATTTTCATTTGCTTCA--C-TTG-AT-CGC-AGTG-T-GGCT--C-ACTTT-CTCCACAACTTTTGTGATT-T-GGAT-TCGTTG--ATTAGA-T--G-TTT-AAATTTCGATGA---TGCC-CAA---TTTTCTTTCAATG--ATTCATA-ATGTC----
gi|11 : caagggcaacacttctacataatacagttcagtttcaatctctgcatgctggataacatgcacaaagtacactctactttacaacaaatcttgcgaagccgatgctcctcagtccttcccaagccaccttctagtgtaaagaaaaaaccggcacaagtttgccagctctttttgtagaggagctaagtatatatgtgcatttgagttgtacatgtgtttattatatctttcatcaaaatttccctctccatctctttcgttctagcccatttccccactataatcatccttagtactccttggcagtgtaagtctagttgcatcaaccctttcttgccatttgtaaaagttaatactacaataggttagcaattttctttacaatttgtaaagtaaactcgagttcatttcagaatagacatccttctagcaattctctgttcgtttgggttgataaatgtctcccagcttctcaataatggattttgcactttctaagacgatctcggagttaacAGTCT--AG-GGATTATTCT--GTT--TCAGCAGACATCT-AATACAACTCCAAAGGG-TG---CGCATGGTT-GTCTC-T--CC-GCATTCTTA-CCAATTATTGCGTG-TCTTTTCACGAGGGGACACATGG-TACTTT--TCTCT-CCACGAA-TTTCCCAATATGGATGATGGTACGTACG-TATTGCGTTGT--GGTCTCAACAA-AAAGTTCCC-AAC--TTTGTCGGTGTGTTTTAGGACATTTGGAATATTTGTGAGAA-TTAG--ATATTTTTTa
gi|15 : AG---TTCAACAA---TGTT-TTTCAATA---TTCATA-ATGTG----CATTTTT------CAGAAATCCAT-------------CACT-CCTTATAAC-----TACTTC-AACCTCAT-CAGGATGCCATT-TT--TCAAGGAAATTGTAGTCTT-GG-GGAT-ATTCTGTGTT---CAGCAGACATCTTAATGCAACTCCAAATGG-TG---CAA--GGGTTGT---CT--TCTGCGCCATTA-CAAATCCTAGCGT-GTCTCTTCACGAGGgtaaggttataaacgcacaaccattgtgtgattattaaagaatcagacgatgtgttactaaccacagttcgtatagagactaatgcctgcactgtcacagacacgggtacgacgtcctgagcacgcggactcatctct
gi|17 : aTAAT-CC--ACTTTT-GAT-A-T-CT-CA------A-------GA---CT----CAGG-----------ATC--CTGTGT----------C--A-TCTTTGTCACCA----TGCTCATGAAAGCAA-TAGTGTCAGTTCTAGAA------AGTTCA--ACA-Aa
gi|18 : aatgtcaagattaatgttgcaaataatgcaacacatgacaatgaataggtaataa-A-CCTCAT-CAGGATGA-ATT-TCT-TCAGGGAACTTGTAGTCTT-AG-GGAT-ATTCT-GTTT--CCAGCAGCCATCTTAATACAACTCCAAAGGG-TG---C-AATAG-TTGTCT-CT--CCTGCATCATTA-CCAATTATTGCGT-GTTTCTTCACGAGGGtgtttttcaatat
gi|2 : aGGAGC-TCTGGATACATATT-TG-TCTC---TTC-GTTGCGAGAGC------TT-----------CTGA--TAAAA-CGTAT-----ATA-GTACAACTTTA-TCA--CCTG--TGAAA--ATCGA-TA--ATTTTCCAG-TTT-TCT---------TGT-TTTTCCAAATAT--CAAAGACAATTTTAA-AATAT-A-TGAAG--TCACA-G--ACTTTAAGTATCAA--A-------------GAA----------------CT-----------T--------------TTAATACC--ACTTTT-GAT-A-T-CT-C-------C-------GC---CT----CGAGG----------ATC--TG-TGTCTTCTTTGCTC--ACGCT---TCATC-----AGC-----AAAC--AATAGTGTCAGTTCTAGAA------CGTTCATCACAGAC----T-TCT--AA-ATATCTCTC--AGCATTG-GATACAATTTCTCTTT---------GA--------AGTGTATAT--AA-G-C-TT-GCGCAG-TCTTA-------TCAACC-TTGGAT-CGC-AGTG-TGG-CTTCC-AC-TTTCTCCAC-ACTTT-G-AATTCT-GGAT-T-GTGT--A---GA-T--GTTTT-AAATTC---TAA---TGCC-CAA---TTTTCTTTCATTG--ATT-ATAGATGTC----
gi|20 : ctatcacgggcacacttctaataatcagcttgagtttccaatcttgcatgctgggtgaacatgcacaagtctctattttcacatctgcgagcatgtccgtctttcagaaccttctggaaaagaaaaaaccgcggccagttcagccttttttaagagggtaattattgtgcatttgagtttaccatgttgtttttatttttcataaatttcctccctcttttcgtttgccccattttcccacttatcatccttatactctgcaagtgttaaagtttctgcatctcttcttcttgcattgtataaagttaatctacatgttgcatttctctaattggaagtaacctgagttatttcagaatagacatttctacaattctctgtttgtttgtttgataaagtctcccagctttctcaatatggatttcacttttaagacgatatg---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAAGTATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTTT-GAT-A-TCCC-C-------A-------GG---CT----C--------------aaaattttaacgaaattcatcctcttataatat
gi|3 : tcCCGGAGC-TCTG-AT-CAT-TTCTG-TGTCG--TTAAGTTGCGAG---G--CTTTT------------TGA--TAAAAACGT-T-----ATA-GTAATACTTTA-GCA--C-TGC-TGAAA--ATC---TATAATTATCCCAGTTT-TCTCTTATTTTTT---TTTTCCAA---TT-CAAAGACAATTTTAACA-TA----TGAAA--T-ACA-G--A-----AGTATCAA--G-------------GAA----------------TTCCGTAACAAACT--------------TTAAT-CC--ACTTTTTGAT-A-T-CC-CCATATC-A-------GG---AT----CTGT-----------GTCATTT-TGTC------A--CC-A-GCT---T-ATCA-----GT-----AAACCA--TATTGTCAGTTTTAGAT------AGT-CATCA-A-AC----TTTTTTTAT-ATCTCTGCCCAGGCATTG-GATGCATTT--CTTTT---------AAGTGTATATA----------AA-GCCCTT-GCA-AG-T-TCC-------TCAAAC-TTGGATTCGC-AGTG-T-G-CT--C-AACTTTCTTCACAA-TTT-G-AATT-TCGGAT-T-GTGAATA---GATT--A-TTT-AAATCC--ATA-----TC--CAA---TTTTCTTTCAATATTTTTCATA-ATGTC----CATTTTT------T---------TAAGAAATTCATCAC--T-CCTTATAAC-----TAGTTC-ATCCTCAT-CAGGATGACATT-
gi|4 : gtgctgtatatatgtgtaatttgagtttacatgttgtttttatatttcatcaaattttcctccactcttttcgtttgcccatttctcactttacatcatcttaataactctgcaaagtgtcaagtcttctgcatctccttcttcttggcattgtataaaagttatctaacatgttagcaaatttcttaattggaaaaaaaaaaaaggtttttaaaaaaaaaaaaaaaactcgagttatttcaagaatagacatttctacaattctctgttcgtttggtttgataaagttcccagcttctcaatatggattcagtattaagacgatCTGGGGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG---TCTTG--TGAT-GTACTGA--TATA---GTTT-----CCA-GT-CAACTTTA-GCA---CTGCTTGCAA--ATCTCATA--ATTTTCAACGCTT-CTT---------C---TTTT-------T--CAAGAAAAATTTTAA-A-TAA-A-TGAAT--TCACA-G--ATTTCAAGCATCGA--GAACTTCTGCAACCAAA----------------CC-----------T--------------TTAAT-CC--ACTTTT-GAT-ATT-CC-C-------A-------GG---CT----C--------------ATA--TT-TGTC------G--C--A-GCT---TCATCA----AGC-----AA--CAA-TAGTGTCAG-TATA-AA------CGTTAATCACA-AC----TATAT--AT-ATGTCTGCC--AGCATTG-GATGCAACT--TGTTT---------AG--------A----------TG---T-TT-AAA-AA-GCTTC-------TCAA-C-TTGGAT-CGC-GGTG-T-G-AC--C-AC---TCTCCACAACTTT-G-AATT-T-GGAT-T----G--A---GA-TAGA-TTTAAAATTC--AGAA---TTTA-CAA---ATT--CTTCAA----------------C----C---CCC------C---------C-------------C--C-CC--AGAAATTAGCTAGTTCAA-CCTCAT-CAAGATGA-ATT-TCT-TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCT-GTTT--CCAGCACACATCTTAATAGAGCTCCAAACGG-TGCCACCAATGG-TTGTCT-CT--CCTGCACCATTA-CCAAATATTGCGT-GTCTCTTCACGAGGGGATACATGACTACTTTATTCTCTCCAA-TAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTgt
gi|5 : taggcccttccagcaatcgtcttgaagtaccggcacaaattcagttgataaagtcccccagcttctcaatatggatttcacttttaagacgatCTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTACGTTGCGAGAGCGGTCTTTTG--TGAATGTACTGA--TATAA-CGTTT-----CCA-GTACAA-TTTA-GCA--CCTGC-TGAAA---TC---CA--GTTT--AAGGCTT-TCT---------T---CTTTC------T--CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAAGTATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTT--GAT-A-C-CC-C-------A-------GG---CT----C--------------ATC--TT-TGTC------G--C--A-GCT---TCATCA----AGC-----ACCCCCAA-AGTGTAAGTACTAAAA------CGTTAATCACA-AC----TATAT--AT--TGTCTGCC--AGCATTG-GATGCAACT--TGTTT---------AA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------T-AA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT---GGAT-T-G-----A---GA-T----TTT-AAATTC--AAAA---TTCA-CAA---ATTCTTTTCAATA--ATTCATA-ATGTC----CATTTTT------T---------T-------------T--TTCC--AGAAA-----TTGTTC-A-CCTCAT-CAGGATGA-ATT-TC--TCAGGGAACTTGTAGTCTT-AG-GG-T-ATTCT-T--T--CCAGCAGCCATCTTAATACAACTCCAAAGGGGTG---CAAATAGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTTTCTTCACGAGGGGACACATGGCTACTTTGTTCTCT-CAA-GAATTT--CCAATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGATGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
gi|6 : CTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--TCTTTG--TGAATGTACTGAACTATAA-CGTTT-----CCA-GTACAA-TTTA-GCA--CCTGC-TGAAA---TC---CA-----TTTAAGTTTT-TCT---------T---TCT-----------CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAA-TATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTT--GAT-A---CC-C-------A-------GG---CT----C--------------ATC--TT-TGTC------G--C--A-GCT---TCATCA----AGC-----A--CCAA--AGTGTAAGTACTAAAA------CGTTAA-CACA-AC----TATAT--AT-ATGTCTGCC--AGCATTG-GATGCAACT--TGTTT---------AA--------A----------AAAGCC-TT-GCA-AG-TCTTC-------T-AA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTT-CTC-ACAACTTT-G-AATT---GGAT-T-G-----A---GA-T----TTT-AAATTC--AAAA---TTCA-CAA---ATTCTTTTCAATA--ATTCATA-ATGTC----CATTTTT------T---------T-------------C-----C--AGAAA-----TTGTTC-A-CCTCAT-CAGGATGA-ATT-CT--TCAGGGAACTTGTAGTCTT-AG-GG-T-ATTCT-T--T--CCAGCAGCCATCTTAATACAACTCCAAAGGG-T----C-AATAGTTTGTCTCTT-----GCATCATTAACCAATTATTGCGTGGT-TCTTCACGAGGGGACACATGGCTACTATGTTCTCT-CAA-GAA-TT--CCAATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTTCCCCAACCTTTTGTC-GTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTa
gi|7 : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCAAGAAC------TT-----------CTGA--TATAA-CGTATCCAGTACATGTACAATTTTA-GCA--CCTGC-TGAAA--ATC---C--------CA--GTTT-TCT---------TGGTTTTTCCAA---TTTCAAAGAAAATTTTAA-A-TAT-A-TGAAA--TCACA-G--A-----AGTATCAA--G-------------GAA----------------CT-----------TCCGCAGCCAAACATTTAAT-CC--ACTTTT-GAT-A-T-CT-CCATACTCA-------GGATCCTGTGTC--------------ATC--TT-TGTC------A--C--A-GCT---TCATCA----CGC-----AAACCAA-TAGTGTCAGTTCTAGAT------AGTTCATCATA-AC----TCTTT--AT-ATCTCTGCC--AGCATTG-GATGCAATT--TCTTTGAAGTGTATAA--------A----------AA-GTC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGGT-CGC-AGTG-C-G-CT--C-AC-TTTCTCCACAACTTT-G-AATT-T-TGAT-T-GTGGT-A---GA-T--A-TTT-AAATCC--ATAA---TGCC-CAAGTTTTTTTTTTCAATA--ATTCATA-ATGTC----CATTTTTCAGAAAT---------TCATCA--------C--T-CCTTATAAC-----TATTTCAA-CCTCAT-CCGGATGATATTATT--TCGAGGAAATTGT----TT-GGAGGAT-ATTCT-GTTT--TCAGCAGACATCTTAATGCAATTTCGAAGGG-T----C----------TCTCCTTGCGTGTCTCCTTA-CGAGGTATT---TG----CTT-ATGA-AGGACACATGACTACAATATTATCT-Catgt
gi|8 : tcgttttgtttgcccatttcccttctcaatgtggctttcactgtaaagacgatCTGGAGCCTCAGGATATAA-TA-TAATATA---ATA---TACGAGAGCG----TCTG--TGAT-GT-CT-A--TATAA-CGTTT-----AAG-ATAAAA-TATA-GCA--C-TGC-TGAAATCATA---TA--AATAT--AGATATATAT---------T---TT------------CAAAGAAAATTTTAA-A-TAA-AATGATA--TAACAAG--ATGTCAAGTATCGA--G-------------GAAACTTCTGCAACCAAACCT-----------T--------------CTAAT-CTCAACTTTTTGAT-A-T-CCTC-------A-------GG---CT-------------------ATA--TT-TGTC------G--C--A-GCTA--TCATGC----AGC-----ACACCAA-TATTGTCAG-TATAAAA------CGCTAATCACA-TCT---TATAT--ATAATGTCTGCC--AGCATTGTGATGCAACT--TGTTT---------AA--------AT---------AA-TAA-TA-ATA-A---CTTC-------TCAA-CTTTGGAT--GCAAATGCC-G-CT--CAAATATTCTCCACAACTTT-A-AATT-T---ATCT-GTGAT-A---GA-T----TTG-AAGTTC--AGAAATTTTCA-CAA---ATTTCTTTTCAT---ATTCATA-AAGTCATAAAATATAA------T---------T------------------------AAC-----TAGTTCAA-CCTCATCCAAAATGA-ATT-TCATTCAAGGAAATT-TAGT-TT-AG-GGAT-ATTC--TGTTTCCCTGCAGACATATTAA
gi|9 : tttgcatgtggaatattcgagttcattcaaatagacatttctacaattatctgttcgcttataagataattagataaagtctctcaggaatatataatatagataataaataaatatatagaagagatGAGC-TCTGGATACAT-TT-TG-TGTC---T-A-GTTGCGAGAGC-----TTT------------TGA--TAAAA-CGTAT-----ATA-GTACAACTTTA-GCAAACCTGC-TGAAA--ATC---TATAATTTCCCAG-TTT-TCTAT-------T---TTTTCCAA---TTTCAAAGACAATTTTAA-A-TAA-G-T---A--TCAAA-GGAACTTCC-GTAACCA-----------------AA----------------CA-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------AATACTCAGG---AT----CCTGTGCCA------ATC--TT-TGTC------A--C--A-GCT---TCATCA----AGT-----AAACCAA-TATTGTCAGTTCTAGAT------AGTTCATCACA-AC----TTTTT--AT-ATCTCTGCC--AGCATTG-GATGCAATT--TCTTT---------AA--------AGTGTATATG-AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-AC-TTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGAT-A---GA-T--A-TTT-AAATCC--ATAA---TGCC-CAA---TTTTCTTTCAATA--TTTCATA-ATGTC----CATTTTT------TAAGAAA---TTCATCA-------C--T-CCTTATAAC-----TAGTTC-ATCCTCAT-CAGGATGACATT-GT--TCAATGAAATTGTAATCTTGGG-GGAT-TTTCT-GTTT--TCAGCAGATATCTTAATGCAACTTC---TGA-TG---AACATAATCAG--GCCC--CCTGCATCATTG-GCAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCTGAGGAACATCGTTGGAGGGATAATGCGTGCGTAATGTCTCATTCTTGTCGTGAATATTAATTGAATTTCAGCTTGATCACGGGCACACCCTCTACAAATCAGTTGAGTTTCCAATCTTTTGCATGCTGGGATGAACATGCACAAGTCTCTATTTTCAACATCTTGCGAGCATGTCCATCCTTTCAGCCAACCTTCTGGAAAAGAAAAACCCGGGCAAAGTTCAGCCTTTTTAGATGCTGTATCATATGTGCATTTGAGTTTACATGTTCGTTTTATGATTTCATAAAAATTTCCTCCACTTTTTCGTTTGGCCCATTCCCACTTACATCATCCTTATTAACTCTACACGTGTAAGTCTTGCCTGCATCTCCCTCTTCTTGCATTGTATAAAGTTATCTACACATGTTAAGCAACTTTCT
Unaligned ( gi|12 ): CTTGAGGACCACCATAGGAGGGATAATGCGTGCAGACATGTCTCATCTGTCGCTGAATGTTAATTGAATTTTTAGCCTGATCACGGGCACACTTCTACACATTGGGATGAAATGTGCAAGTCCCCTATTTTCAACATCTGCGACCATGTCCAGTCCTCTGGAAGAAGTTCCGGCACAAGTTCAGCCTTTTTAAAGGACTGTAGATATGTGTATTGAGTTTACATGTTGTTTTTATATCTTCATAAAGTTTCACTCGTTTTGTTTGCCCATTTCCCACTTA
Unaligned ( gi|13 ): TTTTCAGCCTGATCGCGGGCACACTTCTACATAATCAGTTGAGTTTCCAATCTTTGCATGTTGGGATGAAATGTGCAAGTCCTCTATTTTCAACATCTGCGAGCATGTCCAGTCCTTTCCACCAATCTTCTGGAAGAAGTTCCGGCACAATTTCAGCCTTTTTAGAGGAATGTAGATATGTGTATTTGTAGATATTTGTATTTGAGTTTACATGTTGTTTTTATATCTTCATCAAGTTTCCCTCCACTCGTTTTGTTTGCCCATTTCCC
Unaligned ( gi|14 ): TCTTGAGGAACATCATAGGAGGGATAATGCGTGCAGACATAACGTCTCATATGTCGCTGAATATTTATTGAATTTTCAGCCTGATCACGGGCACACCTCTACATAATCGGTTGAGTTTCCAATGTTTGCATGTTGGGGTGAACATATGCAAGTCCTTTATTTTCAACATCTGCGGGCTTGTTTAGGCCCTTCCAGCAATCGTCTTGAAGTACCGGCACAAATTCAGTT
Unaligned ( gi|16 ): TTTGGAATACTTTGAGAATTTAGGGAGTTTTTTATGTAAGTTTAAAACGCACACATTCTGTTCTTACGGATCAGAAAGATGCTTGTTAACAAGTTGATAAACGATTAATGTCGCACCTGGTTTCGCAGCAATGACGACACAATGGTCAACAGTACGACGTTGAGCAGCGGACTCATCTCTGGT
Unaligned ( gi|19 ): TCTTGAGGAAACCGTAGGAGGATAATGCGTGCAGATATAATGTCTCATTCTGTAGATAGATATAGGATATCAGTCTGTCACAAGAGACACCCTCTACATCATCAGTTGAGTTCCCAATATTTGCATGTGGAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 111 7777777777777777777 11111 22222222 55555555555555555555555555 555555555555555555555555555555555555555555555555555555555555555 66666666666666666666666666666666666666666 222222222222 11111 111111 111 11 111111111 6666666666666666666 1111111 1 111 22222 2222 1111 0000000000000000000000000000000000000000000 11111 111 1 11 222222222222 11 1 1 11 2 1 1 1 1
lowQualScore : 4 1 4 4 4 222 8 2222222222222222222 66 4 6 11111 4 8 4 66 1 4 888 22222222 22 7 4 1 66666666666666666666666666 0 8 4 77 4 666 4 4 55 5 666666666666666666666666666666666666666666666666666666666666666 3 55 7 3 444 3 11111111111111111111111111111111111111111 777 55 4 000000000000 4 4 777 99999 00000 11 0 1 111111 0 4 777 1 333 4 1 4 00 4 66 1 777777777 4444444444444444444 555 4 4 4 4 4444444 1 8 4 4 4 4 4 4 66 4 4 1 4 4 000 4 4 88888 777 4 1111 4 66 1 777 0 99 8888 2 0000 4 55 9999 1111111111111111111111111111111111111111111 3 11111 777 4 9 4 66 4 4 1 4 9 4 5 111111111111 3 5 66 0 5 55 5 333 6 0 33 2 7 7 3 6 3 6 3 3 3 7 6
lowQualScore : . . . . . ... . ................... .. . . ..... . . . .. . . ... ........ .. . . . .......................... . . . .. . ... . . .. . ............................................................... . .. . . ... . ......................................... ... .. . ............ . . ... ..... ..... .. . . ...... . . ... . ... . . . .. . .. . ......... ................... ... . . . . ....... . . . . . . . . .. . . . . . ... . . ..... ... . .... . .. . ... . .. .... . .... . .. .... ........................................... . ..... ... . . . .. . . . . . . . ............ . . .. . . .. . ... . . .. . . . . . . . . . . . .
lowQualScore : 4 1 4 4 4 222 9 7777777777777777777 11 4 9 11111 4 4 4 11 1 4 000 00000000 77 4 4 9 88888888888888888888888888 6 0 0 55 0 555 9 0 55 3 222222222222222222222222222222222222222222222222222222222222222 6 00 3 6 111 6 11111111111111111111111111111111111111111 000 55 0 444444444444 0 0 000 44444 00000 44 8 4 555555 8 0 444 0 999 4 0 4 66 4 11 0 888888888 9999999999999999999 777 4 4 4 4 4444444 1 9 4 4 4 4 4 4 11 4 4 9 4 4 888 4 4 88888 888 4 2222 4 11 0 000 6 55 4444 3 3333 0 55 4444 7777777777777777777777777777777777777777777 4 11111 777 4 6 4 99 4 4 9 4 7 4 0 444444444444 4 6 99 1 0 77 3 666 0 0 88 5 3 3 3 7 3 7 3 3 3 3 7
consensus : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--CTTTTG--TGA--GTACTGA--TATAA-CGTNT-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAA--ATC---T-A--ATTTTCCAGGTTT-TCT---------T--TTTTCCAA---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-G--ATTTCAAGTATCGA--G-------------GAA----------------CT-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----AAACCAATAGTGTCAGTTCTAGAA------CGTTCATCACA-AC-TNTNT---AT-ATNTCT-GCC--AGCATTG-GATGCAACT--TNTT---------TAA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGG--A---GA-T--A-TTT-AAATTC--ANAA---TTCA-CAA---TTTTCTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------C--TCCTTATAA-----CTAGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGACATCTTAATACAACTCCAAAGGG-TG-CA--AATGGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTTTGTTCTCTCCAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGGTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
Reference ( family-410 ) : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--CTTTTG--TGA--GTACTGA--TATAA-CGTNT-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAA--ATC---T-A--ATTTTCNAGGTTT-TCT---------T--TTTTCCAA---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-G--ATTTCAAGTATCGA--G-------------GAA----------------CT-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----AAACCAATAGTGTCAGTTCTAGAA------CGTTCATCACA-AC-TATNT---AT-ATNTCT-GCC--AGCATTG-GATGCAACT--TNTT---------TAA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGG--A---GA-T--A-TTT-AAATTC--ANAA---TTCA-CAA---TTTTCTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------C--TCCTTATAA-----CTAGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTNTTTCCA-GCAGACATCTTAATACAACTCCAAAGGG-TG-CA--AATGGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTTTGTTCTCT-CAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGTTTTCACCAATAAAGTTCCCCAACC-TTTGTCGGTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
gi|1 : C-TCTG-ATACAT-TT--G-TCTCGGATTA-GTTGCGAGAG-A--CTTCTGGATAA--AAACTG-----TAA-----T-----ATA-GTACAACTTTATGCA--CCTGC-CTGAA--ATCA--T-A--ATTTCCCAGATTT-TTTGTTG-----T--TTTTCCAAATTT--CAAAGACAATTTTAATA-TGCTA-TGAAGGCCAACA-G--ACTTTATTAATCAAAGG-------------GGA----------------CT-----------T--------------GTAAT-CC--ACTTTT-GATGA-T-CT-C-------C-------AG---CT----CTCAGTCCTGTGTCTA---TC--TT-TGTC------A--CTAG-GCT-T---CATCATCCGACC-----AAACCAATAGTGTCAGTTCTAAGATCAGTTCATTCATCACA-AC--GTGTTAAAT-ATCTCTTGCCC-AGCATTG-GAT-CAATT--TCTT---------TGA--------AGTGTATATAAAA-GCC-TTTGCA-AGATTTTCATTTGCTTCA--C-TTG-AT-CGC-AGTG-T-GGCT--C-ACTTT-CTCCACAACTTTTGTGATT-T-GGAT-TCGTTG--ATTAGA-T--G-TTT-AAATTTCGATGA---TGCC-CAA---TTTTCTTTCAATG--ATTCATA-ATGTC--
gi|11 : caagggcaacacttctacataatacagttcagtttcaatctctgcatgctggataacatgcacaaagtacactctactttacaacaaatcttgcgaagccgatgctcctcagtccttcccaagccaccttctagtgtaaagaaaaaaccggcacaagtttgccagctctttttgtagaggagctaagtatatatgtgcatttgagttgtacatgtgtttattatatctttcatcaaaatttccctctccatctctttcgttctagcccatttccccactataatcatccttagtactccttggcagtgtaagtctagttgcatcaaccctttcttgccatttgtaaaagttaatactacaataggttagcaattttctttacaatttgtaaagtaaactcgagttcatttcagaatagacatccttctagcaattctctgttcgtttgggttgataaatgtctcccagcttctcaataatggattttgcactttctaagacgatctcggagttaacAGTCT--AG-GGATTATTCTGTTTC-A-GCAGACATCT-AATACAACTCCAAAGGG-TG-CG--CATGGTT-GTCTC-T--CC-GCATTCTTA-CCAATTATTGCGTG-TCTTTTCACGAGGGGACACATGG-TACTT--TTCTCTCCACGAA-TTTCCCAATATGGATGATGGTACGTAC-GTATTGCGTTGT--GGTCTCAACAA-AAAGTT-CCCAA-C-TTTGTCGGTGTGTTTTAGGACATTTGGAATATTTGTGAGAA-TTAG--ATATTTTTTa
gi|15 : AG---TTCAACAA---TGTT-TTTCAATA---TTCATA-ATGTG--CAT----TTT-------T------CAGAAATCCAT-------------CACTCCTTATAA-----CTACTTC-AACCTCAT-CAGGATGCCATT-TT--TCAAGGAAATTGTAGTCTT-GG-GGAT-ATTCTGTGTTCA-GCAGACATCTTAATGCAACTCCAAATGG-TG-CA--A--GGGTTGT---CT--TCTGCGCCATTA-CAAATCCTAGCGT-GTCTCTTCACGAGGgtaaggttataaacgcacaaccattgtgtgattattaaagaatcagacgatgtgttactaaccacagttcgtatagagactaatgcctgcactgtcacagacacgggtacgacgtcctgagcacgcggactcatctct
gi|17 : aTAAT-CC--ACTTTT-GAT-A-T-CT-C-------A-------AGA--CT----C--------------AGGATC--CTGTGTC------------A-TCT-TTGTCACCA----TGCTCATGAAAGCAATAGTGTCAGTTCTAGAA------AGTTCA--ACA-Aa
gi|18 : aatgtcaagattaatgttgcaaataatgcaacacatgacaatgaataggtaataa-A-CCTCAT-CAGGATGA-ATT-TCT-TCAGGGAACTTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGCCATCTTAATACAACTCCAAAGGG-TG-C---AATAG-TTGTCT-CT--CCTGCATCATTA-CCAATTATTGCGT-GTTTCTTCACGAGGGtgtttttcaatat
gi|2 : aGGAGC-TCTGGATACATATT-TG-TCTC---TTC-GTTGCGAGAGC------TT-----------CTGA--TAAAA-CGTAT-----ATA-GTACAACTTTA-TCA--CCTG--TGAAA--ATCGA-T-A--ATTTTCCAG-TTT-TCT---------TGTTTTTCCAAATAT--CAAAGACAATTTTAA-AATAT-A-TGAAG--TCACA-G--ACTTTAAGTATCAA--A-------------GAA----------------CT-----------T--------------TTAATACC--ACTTTT-GAT-A-T-CT-C-------C-------GC---CT----CGAGG----------A---TC--TG-TGTCTTCTTTGCTC--ACGCT-T---CATC-----AGC-----AAA-CAATAGTGTCAGTTCTAGAA------CGTTCATCACAGAC-T-TCT---AA-ATATCT-CTC--AGCATTG-GATACAATTTCTCTT---------TGA--------AGTGTATAT--AA-G-C-TT-GCGCAG-TCTTA-------TCAACC-TTGGAT-CGC-AGTG-TGG-CTTCC-AC-TTTCTCCAC-ACTTT-G-AATTCT-GGAT-T-GTGT--A---GA-T--GTTTT-AAATTC---TAA---TGCC-CAA---TTTTCTTTCATTG--ATT-ATAGATGTCAAAAT----TTTAACGAAAT------TCA-------T-------------C--CTCTTATAA-----
gi|20 : ctatcacgggcacacttctaataatcagcttgagtttccaatcttgcatgctgggtgaacatgcacaagtctctattttcacatctgcgagcatgtccgtctttcagaaccttctggaaaagaaaaaaccgcggccagttcagccttttttaagagggtaattattgtgcatttgagtttaccatgttgtttttatttttcataaatttcctccctcttttcgtttgccccattttcccacttatcatccttatactctgcaagtgttaaagtttctgcatctcttcttcttgcattgtataaagttaatctacatgttgcatttctctaattggaagtaacctgagttatttcagaatagacatttctacaattctctgtttgtttgtttgataaagtctcccagctttctcaatatggatttcacttttaagacgatatg---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAAGTATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTTT-GAT-A-TCCC-C-------A-------GG---CT----C--------------tat
gi|3 : tcCCGGAGC-TCTG-AT-CAT-TTCTG-TGTCG--TTAAGTTGCGAG---G--CTTTT------------TGA--TAAAAACGT-T-----ATA-GTAATACTTTA-GCA--C-TGC-TGAAA--ATC---T-ATAATTATCCCAGTTT-TCTCTTATTTTTT--TTTTCCAA---TT-CAAAGACAATTTTAACA-TA----TGAAA--T-ACA-G--A-----AGTATCAA--G-------------GAA----------------TTCCGTAACAAACT--------------TTAAT-CC--ACTTTTTGAT-A-T-CC-CCATATC-A-------GG---AT----CTGT-----------G---TCATTT-TGTC------A--CC-A-GCT-T----ATCA-----GT-----AAACCA-TATTGTCAGTTTTAGAT------AGT-CATCA-A-AC-TTTTTTT-AT-ATCTCT-GCCCAGGCATTG-GATGCATTT--CTTT---------TAAGTGTATATA----------AA-GCCCTT-GCA-AG-T-TCC-------TCAAAC-TTGGATTCGC-AGTG-T-G-CT--C-AACTTTCTTCACAA-TTT-G-AATT-TCGGAT-T-GTGAATA---GATT--A-TTT-AAATCC--ATA-----TC--CAA---TTTTCTTTCAATATTTTTCATA-ATGTC--CAT----TTT-------T------T---------TAAGAAATTCATCAC--TCCTTATAA-----CTAGTTC-ATCCTCAT-CAGGATGACATT-
gi|4 : gtgctgtatatatgtgtaatttgagtttacatgttgtttttatatttcatcaaattttcctccactcttttcgtttgcccatttctcactttacatcatcttaataactctgcaaagtgtcaagtcttctgcatctccttcttcttggcattgtataaaagttatctaacatgttagcaaatttcttaattggaaaaaaaaaaaaggtttttaaaaaaaaaaaaaaaactcgagttatttcaagaatagacatttctacaattctctgttcgtttggtttgataaagttcccagcttctcaatatggattcagtattaagacgatCTGGGGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG---TCTTG--TGAT-GTACTGA--TATA---GTTT-----CCA-GT-CAACTTTA-GCA---CTGCTTGCAA--ATCTCAT-A--ATTTTCAACGCTT-CTT---------C--TTTT-------T--CAAGAAAAATTTTAA-A-TAA-A-TGAAT--TCACA-G--ATTTCAAGCATCGA--GAACTTCTGCAACCAAA----------------CC-----------T--------------TTAAT-CC--ACTTTT-GAT-ATT-CC-C-------A-------GG---CT----C--------------A---TA--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----AA--CAATAGTGTCAG-TATA-AA------CGTTAATCACA-AC-TATAT---AT-ATGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------TAG--------A----------TG---T-TT-AAA-AA-GCTTC-------TCAA-C-TTGGAT-CGC-GGTG-T-G-AC--C-AC---TCTCCACAACTTT-G-AATT-T-GGAT-T----G--A---GA-TAGA-TTTAAAATTC--AGAA---TTTA-CAA---ATT--CTTCAA----------------C--C----------------C------C---------C-------------C--CCCCCAGAAATTAGCTAGTTCAA-CCTCAT-CAAGATGA-ATT-TCT-TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCACACATCTTAATAGAGCTCCAAACGG-TGCCACCAATGG-TTGTCT-CT--CCTGCACCATTA-CCAAATATTGCGT-GTCTCTTCACGAGGGGATACATGACTACTTTATTCTCTCCAATAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTgt
gi|5 : taggcccttccagcaatcgtcttgaagtaccggcacaaattcagttgataaagtcccccagcttctcaatatggatttcacttttaagacgatCTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTACGTTGCGAGAGCGGTCTTTTG--TGAATGTACTGA--TATAA-CGTTT-----CCA-GTACAA-TTTA-GCA--CCTGC-TGAAA---TC---C-A--GTTT--AAGGCTT-TCT---------T--CTTTC------T--CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAAGTATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTT--GAT-A-C-CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----ACCCCCAAAGTGTAAGTACTAAAA------CGTTAATCACA-AC-TATAT---AT--TGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------TAA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------T-AA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT---GGAT-T-G-----A---GA-T----TTT-AAATTC--AAAA---TTCA-CAA---ATTCTTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------T--TTCC-AGAA-----ATTGTTC-A-CCTCAT-CAGGATGA-ATT-TC--TCAGGGAACTTGTAGTCTT-AG-GG-T-ATTCT--TTCCA-GCAGCCATCTTAATACAACTCCAAAGGGGTG-CA--AATAGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTTTCTTCACGAGGGGACACATGGCTACTTTGTTCTCT-CAAGAATTT--CCAATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGATGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
gi|6 : CTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--TCTTTG--TGAATGTACTGAACTATAA-CGTTT-----CCA-GTACAA-TTTA-GCA--CCTGC-TGAAA---TC---C-A-----TTTAAGTTTT-TCT---------T--TCT-----------CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAA-TATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTT--GAT-A---CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----A--CCAA-AGTGTAAGTACTAAAA------CGTTAA-CACA-AC-TATAT---AT-ATGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------TAA--------A----------AAAGCC-TT-GCA-AG-TCTTC-------T-AA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTT-CTC-ACAACTTT-G-AATT---GGAT-T-G-----A---GA-T----TTT-AAATTC--AAAA---TTCA-CAA---ATTCTTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------C--C----AGAA-----ATTGTTC-A-CCTCAT-CAGGATGA-ATT-CT--TCAGGGAACTTGTAGTCTT-AG-GG-T-ATTCT--TTCCA-GCAGCCATCTTAATACAACTCCAAAGGG-T--CA--A-TAGTTTGTCTCTT-----GCATCATTAACCAATTATTGCGTGGT-TCTTCACGAGGGGACACATGGCTACTATGTTCTCT-CAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTTCCCCAACCTTTTGTC-GTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTa
gi|7 : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCAAGAAC------TT-----------CTGA--TATAA-CGTATCCAGTACATGTACAATTTTA-GCA--CCTGC-TGAAA--ATC---CCA--GTTTTCTTGGTTT-T-----------------TCCAA---TTTCAAAGAAAATTTTAA-A-TAT-A-TGAAA--TCACA-G--A-----AGTATCAA--G-------------GAA----------------CT-----------TCCGCAGCCAAACATTTAAT-CC--ACTTTT-GAT-A-T-CT-CCATACTCA-------GGATCCTGTGTC--------------A---TC--TT-TGTC------A--C--A-GCT-T---CATCA----CGC-----AAACCAATAGTGTCAGTTCTAGAT------AGTTCATCATA-AC-TCTTT---AT-ATCTCT-GCC--AGCATTG-GATGCAATT--TCTTTGAAGTGTATAA--------A----------AA-GTC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGGT-CGC-AGTG-C-G-CT--C-AC-TTTCTCCACAACTTT-G-AATT-T-TGAT-T-GTGGT-A---GA-T--A-TTT-AAATCC--ATAA---TGCC-CAAGTTTTTTTTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------TCAGAAAT---------TCATCA--------C--TCCTTATAA-----CTATTTCAA-CCTCAT-CCGGATGATATTATT--TCGAGGAAATTGT----TT-GGAGGAT-ATTCTGTTTTCA-GCAGACATCTTAATGCAATTTCGAAGGG-T--C------------TCTCCTTGCGTGTCTCCTTA-CGAGGTATT---TG----CTT-ATGA-AGGACACATGACTACAATATTATCT-Catgt
gi|8 : tcgttttgtttgcccatttcccttctcaatgtggctttcactgtaaagacgatCTGGAGCCTCAGGATATAA-TA-TAATATA---ATA---TACGAGAGCG----TCTG--TGAT-GT-CT-A--TATAA-CGTTT-----AAG-ATAAAA-TATA-GCA--C-TGC-TGAAATCATA---T-A--AATAT--AGATATATAT---------T--TT------------CAAAGAAAATTTTAA-A-TAA-AATGATA--TAACAAG--ATGTCAAGTATCGA--G-------------GAAACTTCTGCAACCAAACCT-----------T--------------CTAAT-CTCAACTTTTTGAT-A-T-CCTC-------A-------GG---CT-------------------A---TA--TT-TGTC------G--C--A-GCTAT---CATGC----AGC-----ACACCAATATTGTCAG-TATAAAA------CGCTAATCACA-TCTTATAT---ATAATGTCT-GCC--AGCATTGTGATGCAACT--TGTT---------TAA--------AT---------AA-TAA-TA-ATA-A---CTTC-------TCAA-CTTTGGAT--GCAAATGCC-G-CT--CAAATATTCTCCACAACTTT-A-AATT-T---ATCT-GTGAT-A---GA-T----TTG-AAGTTC--AGAAATTTTCA-CAA---ATTTCTTTTCAT---ATTCATA-AAGT---CATAAAATAT-------A------A---------T----------------------TAA-----CTAGTTCAA-CCTCATCCAAAATGA-ATT-TCATTCAAGGAAATT-TAGT-TT-AG-GGAT-ATTCTGTTTCCCTGCAGACATATTAA
gi|9 : tttgcatgtggaatattcgagttcattcaaatagacatttctacaattatctgttcgcttataagataattagataaagtctctcaggaatatataatatagataataaataaatatatagaagagatGAGC-TCTGGATACAT-TT-TG-TGTC---T-A-GTTGCGAGAGC-----TTT------------TGA--TAAAA-CGTAT-----ATA-GTACAACTTTA-GCAAACCTGC-TGAAA--ATC---T-ATAATTTCCCAG-TTT-TCTAT-------T--TTTTCCAA---TTTCAAAGACAATTTTAA-A-TAA-G-T---A--TCAAA-GGAACTTCC-GTAACCA-----------------AA----------------CA-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------AATACTCAGG---AT----CCTGTGCCA------A---TC--TT-TGTC------A--C--A-GCT-T---CATCA----AGT-----AAACCAATATTGTCAGTTCTAGAT------AGTTCATCACA-AC-TTTTT---AT-ATCTCT-GCC--AGCATTG-GATGCAATT--TCTT---------TAA--------AGTGTATATG-AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-AC-TTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGAT-A---GA-T--A-TTT-AAATCC--ATAA---TGCC-CAA---TTTTCTTTCAATA--TTTCATA-ATGTC--CAT----TTT-------T------TAAGAAA---TTCATCA-------C--TCCTTATAA-----CTAGTTC-ATCCTCAT-CAGGATGACATT-GT--TCAATGAAATTGTAATCTTGGG-GGAT-TTTCTGTTTTCA-GCAGATATCTTAATGCAACTTC---TGA-TG-AA--CATAATCAG--GCCC--CCTGCATCATTG-GCAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCTGAGGAACATCGTTGGAGGGATAATGCGTGCGTAATGTCTCATTCTTGTCGTGAATATTAATTGAATTTCAGCTTGATCACGGGCACACCCTCTACAAATCAGTTGAGTTTCCAATCTTTTGCATGCTGGGATGAACATGCACAAGTCTCTATTTTCAACATCTTGCGAGCATGTCCATCCTTTCAGCCAACCTTCTGGAAAAGAAAAACCCGGGCAAAGTTCAGCCTTTTTAGATGCTGTATCATATGTGCATTTGAGTTTACATGTTCGTTTTATGATTTCATAAAAATTTCCTCCACTTTTTCGTTTGGCCCATTCCCACTTACATCATCCTTATTAACTCTACACGTGTAAGTCTTGCCTGCATCTCCCTCTTCTTGCATTGTATAAAGTTATCTACACATGTTAAGCAACTTTCT
Unaligned ( gi|12 ): CTTGAGGACCACCATAGGAGGGATAATGCGTGCAGACATGTCTCATCTGTCGCTGAATGTTAATTGAATTTTTAGCCTGATCACGGGCACACTTCTACACATTGGGATGAAATGTGCAAGTCCCCTATTTTCAACATCTGCGACCATGTCCAGTCCTCTGGAAGAAGTTCCGGCACAAGTTCAGCCTTTTTAAAGGACTGTAGATATGTGTATTGAGTTTACATGTTGTTTTTATATCTTCATAAAGTTTCACTCGTTTTGTTTGCCCATTTCCCACTTA
Unaligned ( gi|13 ): TTTTCAGCCTGATCGCGGGCACACTTCTACATAATCAGTTGAGTTTCCAATCTTTGCATGTTGGGATGAAATGTGCAAGTCCTCTATTTTCAACATCTGCGAGCATGTCCAGTCCTTTCCACCAATCTTCTGGAAGAAGTTCCGGCACAATTTCAGCCTTTTTAGAGGAATGTAGATATGTGTATTTGTAGATATTTGTATTTGAGTTTACATGTTGTTTTTATATCTTCATCAAGTTTCCCTCCACTCGTTTTGTTTGCCCATTTCCC
Unaligned ( gi|14 ): TCTTGAGGAACATCATAGGAGGGATAATGCGTGCAGACATAACGTCTCATATGTCGCTGAATATTTATTGAATTTTCAGCCTGATCACGGGCACACCTCTACATAATCGGTTGAGTTTCCAATGTTTGCATGTTGGGGTGAACATATGCAAGTCCTTTATTTTCAACATCTGCGGGCTTGTTTAGGCCCTTCCAGCAATCGTCTTGAAGTACCGGCACAAATTCAGTT
Unaligned ( gi|16 ): TTTGGAATACTTTGAGAATTTAGGGAGTTTTTTATGTAAGTTTAAAACGCACACATTCTGTTCTTACGGATCAGAAAGATGCTTGTTAACAAGTTGATAAACGATTAATGTCGCACCTGGTTTCGCAGCAATGACGACACAATGGTCAACAGTACGACGTTGAGCAGCGGACTCATCTCTGGT
Unaligned ( gi|19 ): TCTTGAGGAAACCGTAGGAGGATAATGCGTGCAGATATAATGTCTCATTCTGTAGATAGATATAGGATATCAGTCTGTCACAAGAGACACCCTCTACATCATCAGTTGAGTTCCCAATATTTGCATGTGGAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 111 7777777777777777777 11111 22222222222222222 444444444444444444444444444 555555555555555555555555555555555555555555555555555555555555555 66666666666666666666666666666666666666666 222222222222 11111 111111 111 11 111111111 6666666666666666666 1111111 1 111 22222 2222 1111 0000000000000000000000000000000000000000000 11111 111 1 11 222222222222 1 1 1 11 1 1 1 1 1
lowQualScore : 4 1 4 4 4 222 8 2222222222222222222 66 4 6 11111 4 8 4 66 1 4 888 44444444444444444 4 1 666666666666666666666666666 0 8 4 77 4 666 4 4 55 5 666666666666666666666666666666666666666666666666666666666666666 3 55 7 3 444 3 11111111111111111111111111111111111111111 777 55 4 000000000000 4 4 777 99999 00000 11 0 1 111111 0 4 666 1 333 4 1 4 00 4 66 1 777777777 4444444444444444444 555 4 4 4 4 4444444 1 8 4 4 4 4 4 4 66 4 4 1 4 4 000 4 4 88888 777 4 1111 4 66 1 777 0 99 8888 2 0000 4 55 9999 1111111111111111111111111111111111111111111 3 11111 777 4 9 4 66 4 4 1 4 1 4 5 777777777777 1 66 0 5 8 5 333 2 0 33 2 7 7 3 6 3 6 3 3 3 7 6
lowQualScore : . . . . . ... . ................... .. . . ..... . . . .. . . ... ................. . . ........................... . . . .. . ... . . .. . ............................................................... . .. . . ... . ......................................... ... .. . ............ . . ... ..... ..... .. . . ...... . . ... . ... . . . .. . .. . ......... ................... ... . . . . ....... . . . . . . . . .. . . . . . ... . . ..... ... . .... . .. . ... . .. .... . .... . .. .... ........................................... . ..... ... . . . .. . . . . . . . ............ . .. . . . . ... . . .. . . . . . . . . . . . .
lowQualScore : 4 1 4 4 4 222 9 7777777777777777777 11 4 9 11111 4 4 4 11 1 4 000 88888888888888888 4 9 111111111111111111111111111 6 0 0 55 0 555 9 0 55 3 222222222222222222222222222222222222222222222222222222222222222 6 00 3 6 111 6 11111111111111111111111111111111111111111 000 55 0 444444444444 0 0 000 44444 00000 44 8 4 555555 8 0 222 0 999 4 0 4 66 4 11 0 888888888 9999999999999999999 777 4 4 4 4 4444444 1 9 4 4 4 4 4 4 11 4 4 9 4 4 888 4 4 88888 888 4 2222 4 11 0 000 6 55 4444 3 3333 0 55 4444 7777777777777777777777777777777777777777777 4 11111 777 4 6 4 99 4 4 9 4 1 4 0 555555555555 9 99 1 0 6 3 666 5 0 88 5 3 3 3 7 3 7 3 3 3 3 7
consensus : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--CTTTTG--TGA--GTACTGA--TATAA-CGTNT-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAA--ATC---TA--ATTTTCCAGGTTT-TCT---------T---TTTTCCAA---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-G--ATTTCAAGTATCGA--G-------------GAA----------------CT-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----AAACCAATAGTGTCAGTTCTAGAA------CGTTCATCACA-AC-TNTNT---AT-ATNTCT-GCC--AGCATTG-GATGCAACT--TNTT---------TAA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGG--A---GA-T--A-TTT-AAATTC--ANAA---TTCA-CAA---TTTTCTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------C--TCCTTATAA-----CTAGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGACATCTTAATACAACTCCAAAGGG-TG-CA--AATGGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTTTGTTCTCTCCAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGGTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
Reference ( family-410 ) : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--CTTTTG--TGA--GTACTGA--TATAA-CGTNT-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAA--ATC---TA--ATTTTCCAGGTTT-TCT---------T---TTTTCCAA---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-G--ATTTCAAGTATCGA--G-------------GAA----------------CT-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----AAACCAATAGTGTCAGTTCTAGAA------CGTTCATCACA-AC-TNTNT---AT-ATNTCT-GCC--AGCATTG-GATGCAACT--TNTT---------TAA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGG--A---GA-T--A-TTT-AAATTC--ANAA---TTCA-CAA---TTTTCTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------C--TCCTTATAA-----CTAGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGACATCTTAATACAACTCCAAAGGG-TG-CA--AATGGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTTTGTTCTCTCCAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGGTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
gi|1 : C-TCTG-ATACAT-TT--G-TCTCGGATTA-GTTGCGAGAG-A--CTTCTGGATAA--AAACTG-----TAA-----T-----ATA-GTACAACTTTATGCA--CCTGC-CTGAA--ATCA--TA--ATTTCCCAGATTT-TTTGTTG-----T---TTTTCCAAATTT--CAAAGACAATTTTAATA-TGCTA-TGAAGGCCAACA-G--ACTTTATTAATCAAAGG-------------GGA----------------CT-----------T--------------GTAAT-CC--ACTTTT-GATGA-T-CT-C-------C-------AG---CT----CTCAGTCCTGTGTCTA---TC--TT-TGTC------A--CTAG-GCT-T---CATCATCCGACC-----AAACCAATAGTGTCAGTTCTAAGATCAGTTCATTCATCACA-AC--GTGTTAAAT-ATCTCTTGCCC-AGCATTG-GAT-CAATT--TCTT---------TGA--------AGTGTATATAAAA-GCC-TTTGCA-AGATTTTCATTTGCTTCA--C-TTG-AT-CGC-AGTG-T-GGCT--C-ACTTT-CTCCACAACTTTTGTGATT-T-GGAT-TCGTTG--ATTAGA-T--G-TTT-AAATTTCGATGA---TGCC-CAA---TTTTCTTTCAATG--ATTCATA-ATGTC--
gi|11 : caagggcaacacttctacataatacagttcagtttcaatctctgcatgctggataacatgcacaaagtacactctactttacaacaaatcttgcgaagccgatgctcctcagtccttcccaagccaccttctagtgtaaagaaaaaaccggcacaagtttgccagctctttttgtagaggagctaagtatatatgtgcatttgagttgtacatgtgtttattatatctttcatcaaaatttccctctccatctctttcgttctagcccatttccccactataatcatccttagtactccttggcagtgtaagtctagttgcatcaaccctttcttgccatttgtaaaagttaatactacaataggttagcaattttctttacaatttgtaaagtaaactcgagttcatttcagaatagacatccttctagcaattctctgttcgtttgggttgataaatgtctcccagcttctcaataatggattttgcactttctaagacgatctcggagttaacAGTCT--AG-GGATTATTCTGTTTC-A-GCAGACATCT-AATACAACTCCAAAGGG-TG-CG--CATGG-TTGTCT-CT--CC-GCATTCTTA-CCAATTATTGCGT-GTCTTTTCACGAGGGGACACATGG-TACTT--TTCTCTCCACGAA-TTTCCCAATATGGATGATGGTACGTAC-GTATTGCGTTGT--GGTCTCAACAA-AAAGTT-CCCAA-C-TTTGTCGGTGTGTTTTAGGACATTTGGAATATTTGTGAGAA-TTAG--ATATTTTTTa
gi|15 : AG---TTCAACAA---TGTT-TTTCAATA---TTCATA-ATGTG--CAT----TTT-------T------CAGAAATCCAT-------------CACTCCTTATAA-----CTACTTC-AACCTCAT-CAGGATGCCATT-TT--TCAAGGAAATTGTAGTCTT-GG-GGAT-ATTCTGTGTTCA-GCAGACATCTTAATGCAACTCCAAATGG-TG-CA--A--GGGTTGT---CT--TCTGCGCCATTA-CAAATCCTAGCGT-GTCTCTTCACGAGGgtaaggttataaacgcacaaccattgtgtgattattaaagaatcagacgatgtgttactaaccacagttcgtatagagactaatgcctgcactgtcacagacacgggtacgacgtcctgagcacgcggactcatctct
gi|17 : aTAAT-CC--ACTTTT-GAT-A-T-CT-C-------A-------AGA--CT----C--------------AGGATC--CTGTGTC------------A-TCT-TTGTCACCA----TGCTCATGAAAGCAATAGTGTCAGTTCTAGAA------AGTTCA--ACA-Aa
gi|18 : aatgtcaagattaatgttgcaaataatgcaacacatgacaatgaataggtaataa-A-CCTCAT-CAGGATGA-ATT-TCT-TCAGGGAACTTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGCCATCTTAATACAACTCCAAAGGG-TG-C---AATAG-TTGTCT-CT--CCTGCATCATTA-CCAATTATTGCGT-GTTTCTTCACGAGGGtgtttttcaatat
gi|2 : aGGAGC-TCTGGATACATATT-TG-TCTC---TTC-GTTGCGAGAGC------TT-----------CTGA--TAAAA-CGTAT-----ATA-GTACAACTTTA-TCA--CCTG--TGAAA--ATCGA-TA--ATTTTCCAG-TTT-TCT---------TGT-TTTTCCAAATAT--CAAAGACAATTTTAA-AATAT-A-TGAAG--TCACA-G--ACTTTAAGTATCAA--A-------------GAA----------------CT-----------T--------------TTAATACC--ACTTTT-GAT-A-T-CT-C-------C-------GC---CT----CGAGG----------A---TC--TG-TGTCTTCTTTGCTC--ACGCT-T---CATC-----AGC-----AAA-CAATAGTGTCAGTTCTAGAA------CGTTCATCACAGAC-T-TCT---AA-ATATCT-CTC--AGCATTG-GATACAATTTCTCTT---------TGA--------AGTGTATAT--AA-G-C-TT-GCGCAG-TCTTA-------TCAACC-TTGGAT-CGC-AGTG-TGG-CTTCC-AC-TTTCTCCAC-ACTTT-G-AATTCT-GGAT-T-GTGT--A---GA-T--GTTTT-AAATTC---TAA---TGCC-CAA---TTTTCTTTCATTG--ATT-ATAGATGTCAAAAT----TTTAACGAAAT------TCA-------T-------------C--CTCTTATAA-----
gi|20 : ctatcacgggcacacttctaataatcagcttgagtttccaatcttgcatgctgggtgaacatgcacaagtctctattttcacatctgcgagcatgtccgtctttcagaaccttctggaaaagaaaaaaccgcggccagttcagccttttttaagagggtaattattgtgcatttgagtttaccatgttgtttttatttttcataaatttcctccctcttttcgtttgccccattttcccacttatcatccttatactctgcaagtgttaaagtttctgcatctcttcttcttgcattgtataaagttaatctacatgttgcatttctctaattggaagtaacctgagttatttcagaatagacatttctacaattctctgtttgtttgtttgataaagtctcccagctttctcaatatggatttcacttttaagacgatatg---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAAGTATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTTT-GAT-A-TCCC-C-------A-------GG---CT----C--------------tat
gi|3 : tcCCGGAGC-TCTG-AT-CAT-TTCTG-TGTCG--TTAAGTTGCGAG---G--CTTTT------------TGA--TAAAAACGT-T-----ATA-GTAATACTTTA-GCA--C-TGC-TGAAA--ATC---TATAATTATCCCAGTTT-TCTCTTATTTTTT---TTTTCCAA---TT-CAAAGACAATTTTAACA-TA----TGAAA--T-ACA-G--A-----AGTATCAA--G-------------GAA----------------TTCCGTAACAAACT--------------TTAAT-CC--ACTTTTTGAT-A-T-CC-CCATATC-A-------GG---AT----CTGT-----------G---TCATTT-TGTC------A--CC-A-GCT-T----ATCA-----GT-----AAACCA-TATTGTCAGTTTTAGAT------AGT-CATCA-A-AC-TTTTTTT-AT-ATCTCT-GCCCAGGCATTG-GATGCATTT--CTTT---------TAAGTGTATATA----------AA-GCCCTT-GCA-AG-T-TCC-------TCAAAC-TTGGATTCGC-AGTG-T-G-CT--C-AACTTTCTTCACAA-TTT-G-AATT-TCGGAT-T-GTGAATA---GATT--A-TTT-AAATCC--ATA-----TC--CAA---TTTTCTTTCAATATTTTTCATA-ATGTC--CAT----TTT-------T------T---------TAAGAAATTCATCAC--TCCTTATAA-----CTAGTTC-ATCCTCAT-CAGGATGACATT-
gi|4 : gtgctgtatatatgtgtaatttgagtttacatgttgtttttatatttcatcaaattttcctccactcttttcgtttgcccatttctcactttacatcatcttaataactctgcaaagtgtcaagtcttctgcatctccttcttcttggcattgtataaaagttatctaacatgttagcaaatttcttaattggaaaaaaaaaaaaggtttttaaaaaaaaaaaaaaaactcgagttatttcaagaatagacatttctacaattctctgttcgtttggtttgataaagttcccagcttctcaatatggattcagtattaagacgatCTGGGGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG---TCTTG--TGAT-GTACTGA--TATA---GTTT-----CCA-GT-CAACTTTA-GCA---CTGCTTGCAA--ATCTCATA--ATTTTCAACGCTT-CTT---------C---TTTT-------T--CAAGAAAAATTTTAA-A-TAA-A-TGAAT--TCACA-G--ATTTCAAGCATCGA--GAACTTCTGCAACCAAA----------------CC-----------T--------------TTAAT-CC--ACTTTT-GAT-ATT-CC-C-------A-------GG---CT----C--------------A---TA--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----AA--CAATAGTGTCAG-TATA-AA------CGTTAATCACA-AC-TATAT---AT-ATGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------TAG--------A----------TG---T-TT-AAA-AA-GCTTC-------TCAA-C-TTGGAT-CGC-GGTG-T-G-AC--C-AC---TCTCCACAACTTT-G-AATT-T-GGAT-T----G--A---GA-TAGA-TTTAAAATTC--AGAA---TTTA-CAA---ATT--CTTCAA----------------C--C----------------C------C---------C-------------C--CCCCCAGAAATTAGCTAGTTCAA-CCTCAT-CAAGATGA-ATT-TCT-TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCACACATCTTAATAGAGCTCCAAACGG-TGCCACCAATGG-TTGTCT-CT--CCTGCACCATTA-CCAAATATTGCGT-GTCTCTTCACGAGGGGATACATGACTACTTTATTCTCTCCAATAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTgt
gi|5 : taggcccttccagcaatcgtcttgaagtaccggcacaaattcagttgataaagtcccccagcttctcaatatggatttcacttttaagacgatCTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTACGTTGCGAGAGCGGTCTTTTG--TGAATGTACTGA--TATAA-CGTTT-----CCA-GTACAA-TTTA-GCA--CCTGC-TGAAA---TC---CA--GTTT--AAGGCTT-TCT---------T---CTTTC------T--CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAAGTATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTT--GAT-A-C-CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----ACCCCCAAAGTGTAAGTACTAAAA------CGTTAATCACA-AC-TATAT---AT--TGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------TAA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------T-AA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT---GGAT-T-G-----A---GA-T----TTT-AAATTC--AAAA---TTCA-CAA---ATTCTTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------T--TTCC-AGAA-----ATTGTTC-A-CCTCAT-CAGGATGA-ATT-TC--TCAGGGAACTTGTAGTCTT-AG-GG-T-ATTCT--TTCCA-GCAGCCATCTTAATACAACTCCAAAGGGGTG-CA--AATAGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTTTCTTCACGAGGGGACACATGGCTACTTTGTTCTCT-CAAGAATTT--CCAATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGATGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
gi|6 : CTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--TCTTTG--TGAATGTACTGAACTATAA-CGTTT-----CCA-GTACAA-TTTA-GCA--CCTGC-TGAAA---TC---CA----TTT--AAGTTT-T-----------T---CTTTC------T--CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAA-TATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTT--GAT-A---CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----A--CCAA-AGTGTAAGTACTAAAA------CGTTAA-CACA-AC-TATAT---AT-ATGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------TAA--------A----------AAAGCC-TT-GCA-AG-TCTTC-------T-AA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTT-CTC-ACAACTTT-G-AATT---GGAT-T-G-----A---GA-T----TTT-AAATTC--AAAA---TTCA-CAA---ATTCTTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------C--C----AGAA-----ATTGTTC-A-CCTCAT-CAGGATGA-ATT-CT--TCAGGGAACTTGTAGTCTT-AG-GG-T-ATTCT--TTCCA-GCAGCCATCTTAATACAACTCCAAAGGG-T--CA--A-TAGTTTGTCTCTT-----GCATCATTAACCAATTATTGCGTGGT-TCTTCACGAGGGGACACATGGCTACTATGTTCTCTC-AAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTTCCCCAACCTTTTGTC-GTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTa
gi|7 : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCAAGAAC------TT-----------CTGA--TATAA-CGTATCCAGTACATGTACAATTTTA-GCA--CCTGC-TGAAA--ATC------------CCAG-TTT-TCT---------TGGTTTTTCCAA---TTTCAAAGAAAATTTTAA-A-TAT-A-TGAAA--TCACA-G--A-----AGTATCAA--G-------------GAA----------------CT-----------TCCGCAGCCAAACATTTAAT-CC--ACTTTT-GAT-A-T-CT-CCATACTCA-------GGATCCTGTGTC--------------A---TC--TT-TGTC------A--C--A-GCT-T---CATCA----CGC-----AAACCAATAGTGTCAGTTCTAGAT------AGTTCATCATA-AC-TCTTT---AT-ATCTCT-GCC--AGCATTG-GATGCAATT--TCTTTGAAGTGTATAA--------A----------AA-GTC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGGT-CGC-AGTG-C-G-CT--C-AC-TTTCTCCACAACTTT-G-AATT-T-TGAT-T-GTGGT-A---GA-T--A-TTT-AAATCC--ATAA---TGCC-CAAGTTTTTTTTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------TCAGAAAT---------TCATCA--------C--TCCTTATAA-----CTATTTCAA-CCTCAT-CCGGATGATATTATT--TCGAGGAAATTGT----TT-GGAGGAT-ATTCTGTTTTCA-GCAGACATCTTAATGCAATTTCGAAGGG-T--C------------TCTCCTTGCGTGTCTCCTTA-CGAGGTATT---TG----CTT-ATGA-AGGACACATGACTACAATATTATCTCatgt
gi|8 : tcgttttgtttgcccatttcccttctcaatgtggctttcactgtaaagacgatCTGGAGCCTCAGGATATAA-TA-TAATATA---ATA---TACGAGAGCG----TCTG--TGAT-GT-CT-A--TATAA-CGTTT-----AAG-ATAAAA-TATA-GCA--C-TGC-TGAAATCATA---TA--AATAT--AGATATATAT---------T---TT------------CAAAGAAAATTTTAA-A-TAA-AATGATA--TAACAAG--ATGTCAAGTATCGA--G-------------GAAACTTCTGCAACCAAACCT-----------T--------------CTAAT-CTCAACTTTTTGAT-A-T-CCTC-------A-------GG---CT-------------------A---TA--TT-TGTC------G--C--A-GCTAT---CATGC----AGC-----ACACCAATATTGTCAG-TATAAAA------CGCTAATCACA-TCTTATAT---ATAATGTCT-GCC--AGCATTGTGATGCAACT--TGTT---------TAA--------AT---------AA-TAA-TA-ATA-A---CTTC-------TCAA-CTTTGGAT--GCAAATGCC-G-CT--CAAATATTCTCCACAACTTT-A-AATT-T---ATCT-GTGAT-A---GA-T----TTG-AAGTTC--AGAAATTTTCA-CAA---ATTTCTTTTCAT---ATTCATA-AAGT---CATAAAATAT-------A------A---------T----------------------TAA-----CTAGTTCAA-CCTCATCCAAAATGA-ATT-TCATTCAAGGAAATT-TAGT-TT-AG-GGAT-ATTCTGTTTCCCTGCAGACATATTAA
gi|9 : tttgcatgtggaatattcgagttcattcaaatagacatttctacaattatctgttcgcttataagataattagataaagtctctcaggaatatataatatagataataaataaatatatagaagagatGAGC-TCTGGATACAT-TT-TG-TGTC---T-A-GTTGCGAGAGC-----TTT------------TGA--TAAAA-CGTAT-----ATA-GTACAACTTTA-GCAAACCTGC-TGAAA--ATC---TATAATTTCCCAG-TTT-TCTAT-------T---TTTTCCAA---TTTCAAAGACAATTTTAA-A-TAA-G-T---A--TCAAA-GGAACTTCC-GTAACCA-----------------AA----------------CA-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------AATACTCAGG---AT----CCTGTGCCA------A---TC--TT-TGTC------A--C--A-GCT-T---CATCA----AGT-----AAACCAATATTGTCAGTTCTAGAT------AGTTCATCACA-AC-TTTTT---AT-ATCTCT-GCC--AGCATTG-GATGCAATT--TCTT---------TAA--------AGTGTATATG-AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-AC-TTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGAT-A---GA-T--A-TTT-AAATCC--ATAA---TGCC-CAA---TTTTCTTTCAATA--TTTCATA-ATGTC--CAT----TTT-------T------TAAGAAA---TTCATCA-------C--TCCTTATAA-----CTAGTTC-ATCCTCAT-CAGGATGACATT-GT--TCAATGAAATTGTAATCTTGGG-GGAT-TTTCTGTTTTCA-GCAGATATCTTAATGCAACTTC---TGA-TG-AA--CATAATCAG--GCCC--CCTGCATCATTG-GCAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCTGAGGAACATCGTTGGAGGGATAATGCGTGCGTAATGTCTCATTCTTGTCGTGAATATTAATTGAATTTCAGCTTGATCACGGGCACACCCTCTACAAATCAGTTGAGTTTCCAATCTTTTGCATGCTGGGATGAACATGCACAAGTCTCTATTTTCAACATCTTGCGAGCATGTCCATCCTTTCAGCCAACCTTCTGGAAAAGAAAAACCCGGGCAAAGTTCAGCCTTTTTAGATGCTGTATCATATGTGCATTTGAGTTTACATGTTCGTTTTATGATTTCATAAAAATTTCCTCCACTTTTTCGTTTGGCCCATTCCCACTTACATCATCCTTATTAACTCTACACGTGTAAGTCTTGCCTGCATCTCCCTCTTCTTGCATTGTATAAAGTTATCTACACATGTTAAGCAACTTTCT
Unaligned ( gi|12 ): CTTGAGGACCACCATAGGAGGGATAATGCGTGCAGACATGTCTCATCTGTCGCTGAATGTTAATTGAATTTTTAGCCTGATCACGGGCACACTTCTACACATTGGGATGAAATGTGCAAGTCCCCTATTTTCAACATCTGCGACCATGTCCAGTCCTCTGGAAGAAGTTCCGGCACAAGTTCAGCCTTTTTAAAGGACTGTAGATATGTGTATTGAGTTTACATGTTGTTTTTATATCTTCATAAAGTTTCACTCGTTTTGTTTGCCCATTTCCCACTTA
Unaligned ( gi|13 ): TTTTCAGCCTGATCGCGGGCACACTTCTACATAATCAGTTGAGTTTCCAATCTTTGCATGTTGGGATGAAATGTGCAAGTCCTCTATTTTCAACATCTGCGAGCATGTCCAGTCCTTTCCACCAATCTTCTGGAAGAAGTTCCGGCACAATTTCAGCCTTTTTAGAGGAATGTAGATATGTGTATTTGTAGATATTTGTATTTGAGTTTACATGTTGTTTTTATATCTTCATCAAGTTTCCCTCCACTCGTTTTGTTTGCCCATTTCCC
Unaligned ( gi|14 ): TCTTGAGGAACATCATAGGAGGGATAATGCGTGCAGACATAACGTCTCATATGTCGCTGAATATTTATTGAATTTTCAGCCTGATCACGGGCACACCTCTACATAATCGGTTGAGTTTCCAATGTTTGCATGTTGGGGTGAACATATGCAAGTCCTTTATTTTCAACATCTGCGGGCTTGTTTAGGCCCTTCCAGCAATCGTCTTGAAGTACCGGCACAAATTCAGTT
Unaligned ( gi|16 ): TTTGGAATACTTTGAGAATTTAGGGAGTTTTTTATGTAAGTTTAAAACGCACACATTCTGTTCTTACGGATCAGAAAGATGCTTGTTAACAAGTTGATAAACGATTAATGTCGCACCTGGTTTCGCAGCAATGACGACACAATGGTCAACAGTACGACGTTGAGCAGCGGACTCATCTCTGGT
Unaligned ( gi|19 ): TCTTGAGGAAACCGTAGGAGGATAATGCGTGCAGATATAATGTCTCATTCTGTAGATAGATATAGGATATCAGTCTGTCACAAGAGACACCCTCTACATCATCAGTTGAGTTCCCAATATTTGCATGTGGAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 111 7777777777777777777 11111 22222222222222222 444444444444444444444444444 555555555555555555555555555555555555555555555555555555555555555 66666666666666666666666666666666666666666 222222222222 11111 111111 111 11 111111111 6666666666666666666 1111111 1 111 22222 2222 1111 0000000000000000000000000000000000000000000 11111 111 1 11 222222222222 1 1 1 11 1 1 1 1 1
lowQualScore : 4 1 4 4 4 222 8 2222222222222222222 66 4 6 11111 4 8 4 66 1 4 888 44444444444444444 4 1 666666666666666666666666666 0 8 4 77 4 666 4 4 55 5 666666666666666666666666666666666666666666666666666666666666666 3 55 7 3 444 3 11111111111111111111111111111111111111111 777 55 4 000000000000 4 4 777 99999 00000 11 0 1 111111 0 4 666 1 333 4 1 4 00 4 66 1 777777777 4444444444444444444 555 4 4 4 4 4444444 1 8 4 4 4 4 4 4 66 4 4 1 4 4 000 4 4 88888 777 4 1111 4 66 1 777 0 99 8888 2 0000 4 55 9999 1111111111111111111111111111111111111111111 3 11111 777 4 9 4 66 4 4 1 4 1 4 5 777777777777 1 66 0 5 8 5 333 2 0 33 2 7 7 3 6 3 6 3 3 3 7 6
lowQualScore : . . . . . ... . ................... .. . . ..... . . . .. . . ... ................. . . ........................... . . . .. . ... . . .. . ............................................................... . .. . . ... . ......................................... ... .. . ............ . . ... ..... ..... .. . . ...... . . ... . ... . . . .. . .. . ......... ................... ... . . . . ....... . . . . . . . . .. . . . . . ... . . ..... ... . .... . .. . ... . .. .... . .... . .. .... ........................................... . ..... ... . . . .. . . . . . . . ............ . .. . . . . ... . . .. . . . . . . . . . . . .
lowQualScore : 4 1 4 4 4 222 9 7777777777777777777 11 4 9 11111 4 4 4 11 1 4 000 88888888888888888 4 9 111111111111111111111111111 6 0 0 55 0 555 9 0 55 3 222222222222222222222222222222222222222222222222222222222222222 6 00 3 6 111 6 11111111111111111111111111111111111111111 000 55 0 444444444444 0 0 000 44444 00000 44 8 4 555555 8 0 222 0 999 4 0 4 66 4 11 0 888888888 9999999999999999999 777 4 4 4 4 4444444 1 9 4 4 4 4 4 4 11 4 4 9 4 4 888 4 4 88888 888 4 2222 4 11 0 000 6 55 4444 3 3333 0 55 4444 7777777777777777777777777777777777777777777 4 11111 777 4 6 4 99 4 4 9 4 1 4 0 555555555555 9 99 1 0 6 3 666 5 0 88 5 3 3 3 7 3 7 3 3 3 3 7
consensus : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--CTTTTG--TGA--GTACTGA--TATAA-CGTNT-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAA--ATC---TA--ATTTTCCAGGTTT-TCT---------T---TTTTCCAA---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-G--ATTTCAAGTATCGA--G-------------GAA----------------CT-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----AAACCAATAGTGTCAGTTCTAGAA------CGTTCATCACA-AC-TNTNT---AT-ATNTCT-GCC--AGCATTG-GATGCAACT--TNTT---------TAA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGG--A---GA-T--A-TTT-AAATTC--ANAA---TTCA-CAA---TTTTCTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------C--TCCTTATAA-----CTAGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGACATCTTAATACAACTCCAAAGGG-TG-CA--AATGGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTTTGTTCTCTCCAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGGTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
Reference ( family-410 ) : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--CTTTTG--TGA--GTACTGA--TATAA-CGTNT-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAA--ATC---TA--ATTTTCCAGGTTT-TCT---------T---TTTTCCAA---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-G--ATTTCAAGTATCGA--G-------------GAA----------------CT-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----AAACCAATAGTGTCAGTTCTAGAA------CGTTCATCACA-AC-TNTNT---AT-ATNTCT-GCC--AGCATTG-GATGCAACT--TNTT---------TAA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGG--A---GA-T--A-TTT-AAATTC--ANAA---TTCA-CAA---TTTTCTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------C--TCCTTATAA-----CTAGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGACATCTTAATACAACTCCAAAGGG-TG-CA--AATGGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTTTGTTCTCTCCAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGGTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
gi|1 : C-TCTG-ATACAT-TT--G-TCTCGGATTA-GTTGCGAGAG-A--CTTCTGGATAA--AAACTG-----TAA-----T-----ATA-GTACAACTTTATGCA--CCTGC-CTGAA--ATCA--TA--ATTTCCCAGATTT-TTTGTTG-----T---TTTTCCAAATTT--CAAAGACAATTTTAATA-TGCTA-TGAAGGCCAACA-G--ACTTTATTAATCAAAGG-------------GGA----------------CT-----------T--------------GTAAT-CC--ACTTTT-GATGA-T-CT-C-------C-------AG---CT----CTCAGTCCTGTGTCTA---TC--TT-TGTC------A--CTAG-GCT-T---CATCATCCGACC-----AAACCAATAGTGTCAGTTCTAAGATCAGTTCATTCATCACA-AC--GTGTTAAAT-ATCTCTTGCCC-AGCATTG-GAT-CAATT--TCTT---------TGA--------AGTGTATATAAAA-GCC-TTTGCA-AGATTTTCATTTGCTTCA--C-TTG-AT-CGC-AGTG-T-GGCT--C-ACTTT-CTCCACAACTTTTGTGATT-T-GGAT-TCGTTG--ATTAGA-T--G-TTT-AAATTTCGATGA---TGCC-CAA---TTTTCTTTCAATG--ATTCATA-ATGTC--
gi|11 : caagggcaacacttctacataatacagttcagtttcaatctctgcatgctggataacatgcacaaagtacactctactttacaacaaatcttgcgaagccgatgctcctcagtccttcccaagccaccttctagtgtaaagaaaaaaccggcacaagtttgccagctctttttgtagaggagctaagtatatatgtgcatttgagttgtacatgtgtttattatatctttcatcaaaatttccctctccatctctttcgttctagcccatttccccactataatcatccttagtactccttggcagtgtaagtctagttgcatcaaccctttcttgccatttgtaaaagttaatactacaataggttagcaattttctttacaatttgtaaagtaaactcgagttcatttcagaatagacatccttctagcaattctctgttcgtttgggttgataaatgtctcccagcttctcaataatggattttgcactttctaagacgatctcggagttaacAGTCT--AG-GGATTATTCTGTTTC-A-GCAGACATCT-AATACAACTCCAAAGGG-TG-CG--CATGG-TTGTCT-CT--CC-GCATTCTTA-CCAATTATTGCGT-GTCTTTTCACGAGGGGACACATGG-TACTT--TTCTCTCCACGAA-TTTCCCAATATGGATGATGGTACGTAC-GTATTGCGTTGT--GGTCTCAACAA-AAAGTT-CCCAA-C-TTTGTCGGTGTGTTTTAGGACATTTGGAATATTTGTGAGAA-TTAG--ATATTTTTTa
gi|15 : AG---TTCAACAA---TGTT-TTTCAATA---TTCATA-ATGTG--CAT----TTT-------T------CAGAAATCCAT-------------CACTCCTTATAA-----CTACTTC-AACCTCAT-CAGGATGCCATT-TT--TCAAGGAAATTGTAGTCTT-GG-GGAT-ATTCTGTGTTCA-GCAGACATCTTAATGCAACTCCAAATGG-TG-CA--A--GGGTTGT---CT--TCTGCGCCATTA-CAAATCCTAGCGT-GTCTCTTCACGAGGgtaaggttataaacgcacaaccattgtgtgattattaaagaatcagacgatgtgttactaaccacagttcgtatagagactaatgcctgcactgtcacagacacgggtacgacgtcctgagcacgcggactcatctct
gi|17 : aTAAT-CC--ACTTTT-GAT-A-T-CT-C-------A-------AGA--CT----C--------------AGGATC--CTGTGTC------------A-TCT-TTGTCACCA----TGCTCATGAAAGCAATAGTGTCAGTTCTAGAA------AGTTCA--ACA-Aa
gi|18 : aatgtcaagattaatgttgcaaataatgcaacacatgacaatgaataggtaataa-A-CCTCAT-CAGGATGA-ATT-TCT-TCAGGGAACTTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGCCATCTTAATACAACTCCAAAGGG-TG-C---AATAG-TTGTCT-CT--CCTGCATCATTA-CCAATTATTGCGT-GTTTCTTCACGAGGGtgtttttcaatat
gi|2 : aGGAGC-TCTGGATACATATT-TG-TCTC---TTC-GTTGCGAGAGC------TT-----------CTGA--TAAAA-CGTAT-----ATA-GTACAACTTTA-TCA--CCTG--TGAAA--ATCGA-TA--ATTTTCCAG-TTT-TCT---------TGT-TTTTCCAAATAT--CAAAGACAATTTTAA-AATAT-A-TGAAG--TCACA-G--ACTTTAAGTATCAA--A-------------GAA----------------CT-----------T--------------TTAATACC--ACTTTT-GAT-A-T-CT-C-------C-------GC---CT----CGAGG----------A---TC--TG-TGTCTTCTTTGCTC--ACGCT-T---CATC-----AGC-----AAA-CAATAGTGTCAGTTCTAGAA------CGTTCATCACAGAC-T-TCT---AA-ATATCT-CTC--AGCATTG-GATACAATTTCTCTT---------TGA--------AGTGTATAT--AA-G-C-TT-GCGCAG-TCTTA-------TCAACC-TTGGAT-CGC-AGTG-TGG-CTTCC-AC-TTTCTCCAC-ACTTT-G-AATTCT-GGAT-T-GTGT--A---GA-T--GTTTT-AAATTC---TAA---TGCC-CAA---TTTTCTTTCATTG--ATT-ATAGATGTCAAAAT----TTTAACGAAAT------TCA-------T-------------C--CTCTTATAA-----
gi|20 : ctatcacgggcacacttctaataatcagcttgagtttccaatcttgcatgctgggtgaacatgcacaagtctctattttcacatctgcgagcatgtccgtctttcagaaccttctggaaaagaaaaaaccgcggccagttcagccttttttaagagggtaattattgtgcatttgagtttaccatgttgtttttatttttcataaatttcctccctcttttcgtttgccccattttcccacttatcatccttatactctgcaagtgttaaagtttctgcatctcttcttcttgcattgtataaagttaatctacatgttgcatttctctaattggaagtaacctgagttatttcagaatagacatttctacaattctctgtttgtttgtttgataaagtctcccagctttctcaatatggatttcacttttaagacgatatg---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAAGTATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTTT-GAT-A-TCCC-C-------A-------GG---CT----C--------------tat
gi|3 : tcCCGGAGC-TCTG-AT-CAT-TTCTG-TGTCG--TTAAGTTGCGAG---G--CTTTT------------TGA--TAAAAACGT-T-----ATA-GTAATACTTTA-GCA--C-TGC-TGAAA--ATC---TATAATTATCCCAGTTT-TCTCTTATTTTTT---TTTTCCAA---TT-CAAAGACAATTTTAACA-TA----TGAAA--T-ACA-G--A-----AGTATCAA--G-------------GAA----------------TTCCGTAACAAACT--------------TTAAT-CC--ACTTTTTGAT-A-T-CC-CCATATC-A-------GG---AT----CTGT-----------G---TCATTT-TGTC------A--CC-A-GCT-T----ATCA-----GT-----AAACCA-TATTGTCAGTTTTAGAT------AGT-CATCA-A-AC-TTTTTTT-AT-ATCTCT-GCCCAGGCATTG-GATGCATTT--CTTT---------TAAGTGTATATA----------AA-GCCCTT-GCA-AG-T-TCC-------TCAAAC-TTGGATTCGC-AGTG-T-G-CT--C-AACTTTCTTCACAA-TTT-G-AATT-TCGGAT-T-GTGAATA---GATT--A-TTT-AAATCC--ATA-----TC--CAA---TTTTCTTTCAATATTTTTCATA-ATGTC--CAT----TTT-------T------T---------TAAGAAATTCATCAC--TCCTTATAA-----CTAGTTC-ATCCTCAT-CAGGATGACATT-
gi|4 : gtgctgtatatatgtgtaatttgagtttacatgttgtttttatatttcatcaaattttcctccactcttttcgtttgcccatttctcactttacatcatcttaataactctgcaaagtgtcaagtcttctgcatctccttcttcttggcattgtataaaagttatctaacatgttagcaaatttcttaattggaaaaaaaaaaaaggtttttaaaaaaaaaaaaaaaactcgagttatttcaagaatagacatttctacaattctctgttcgtttggtttgataaagttcccagcttctcaatatggattcagtattaagacgatCTGGGGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG---TCTTG--TGAT-GTACTGA--TATA---GTTT-----CCA-GT-CAACTTTA-GCA---CTGCTTGCAA--ATCTCATA--ATTTTCAACGCTT-CTT---------C---TTTT-------T--CAAGAAAAATTTTAA-A-TAA-A-TGAAT--TCACA-G--ATTTCAAGCATCGA--GAACTTCTGCAACCAAA----------------CC-----------T--------------TTAAT-CC--ACTTTT-GAT-ATT-CC-C-------A-------GG---CT----C--------------A---TA--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----AA--CAATAGTGTCAG-TATA-AA------CGTTAATCACA-AC-TATAT---AT-ATGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------TAG--------A----------TG---T-TT-AAA-AA-GCTTC-------TCAA-C-TTGGAT-CGC-GGTG-T-G-AC--C-AC---TCTCCACAACTTT-G-AATT-T-GGAT-T----G--A---GA-TAGA-TTTAAAATTC--AGAA---TTTA-CAA---ATT--CTTCAA----------------C--C----------------C------C---------C-------------C--CCCCCAGAAATTAGCTAGTTCAA-CCTCAT-CAAGATGA-ATT-TCT-TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCACACATCTTAATAGAGCTCCAAACGG-TGCCACCAATGG-TTGTCT-CT--CCTGCACCATTA-CCAAATATTGCGT-GTCTCTTCACGAGGGGATACATGACTACTTTATTCTCTCCAATAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTgt
gi|5 : taggcccttccagcaatcgtcttgaagtaccggcacaaattcagttgataaagtcccccagcttctcaatatggatttcacttttaagacgatCTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTACGTTGCGAGAGCGGTCTTTTG--TGAATGTACTGA--TATAA-CGTTT-----CCA-GTACAA-TTTA-GCA--CCTGC-TGAAA---TC---CA--GTTT--AAGGCTT-TCT---------T---CTTTC------T--CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAAGTATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTT--GAT-A-C-CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----ACCCCCAAAGTGTAAGTACTAAAA------CGTTAATCACA-AC-TATAT---AT--TGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------TAA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------T-AA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT---GGAT-T-G-----A---GA-T----TTT-AAATTC--AAAA---TTCA-CAA---ATTCTTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------T--TTCC-AGAA-----ATTGTTC-A-CCTCAT-CAGGATGA-ATT-TC--TCAGGGAACTTGTAGTCTT-AG-GG-T-ATTCT--TTCCA-GCAGCCATCTTAATACAACTCCAAAGGGGTG-CA--AATAGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTTTCTTCACGAGGGGACACATGGCTACTTTGTTCTCT-CAAGAATTT--CCAATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGATGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
gi|6 : CTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--TCTTTG--TGAATGTACTGAACTATAA-CGTTT-----CCA-GTACAA-TTTA-GCA--CCTGC-TGAAA---TC---CA----TTT--AAGTTT-T-----------T---CTTTC------T--CAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-G--ATTTCAA-TATCGA--G-------------GTA----------------CT-----------T--------------TTAAT-TC--ACTTT--GAT-A---CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----A--CCAA-AGTGTAAGTACTAAAA------CGTTAA-CACA-AC-TATAT---AT-ATGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------TAA--------A----------AAAGCC-TT-GCA-AG-TCTTC-------T-AA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTT-CTC-ACAACTTT-G-AATT---GGAT-T-G-----A---GA-T----TTT-AAATTC--AAAA---TTCA-CAA---ATTCTTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------C--C----AGAA-----ATTGTTC-A-CCTCAT-CAGGATGA-ATT-CT--TCAGGGAACTTGTAGTCTT-AG-GG-T-ATTCT--TTCCA-GCAGCCATCTTAATACAACTCCAAAGGG-T--CA--A-TAGTTTGTCTCTT-----GCATCATTAACCAATTATTGCGTGGT-TCTTCACGAGGGGACACATGGCTACTATGTTCTCTC-AAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTTCCCCAACCTTTTGTC-GTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTa
gi|7 : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCAAGAAC------TT-----------CTGA--TATAA-CGTATCCAGTACATGTACAATTTTA-GCA--CCTGC-TGAAA--ATC------------CCAG-TTT-TCT---------TGGTTTTTCCAA---TTTCAAAGAAAATTTTAA-A-TAT-A-TGAAA--TCACA-G--A-----AGTATCAA--G-------------GAA----------------CT-----------TCCGCAGCCAAACATTTAAT-CC--ACTTTT-GAT-A-T-CT-CCATACTCA-------GGATCCTGTGTC--------------A---TC--TT-TGTC------A--C--A-GCT-T---CATCA----CGC-----AAACCAATAGTGTCAGTTCTAGAT------AGTTCATCATA-AC-TCTTT---AT-ATCTCT-GCC--AGCATTG-GATGCAATT--TCTTTGAAGTGTATAA--------A----------AA-GTC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGGT-CGC-AGTG-C-G-CT--C-AC-TTTCTCCACAACTTT-G-AATT-T-TGAT-T-GTGGT-A---GA-T--A-TTT-AAATCC--ATAA---TGCC-CAAGTTTTTTTTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------TCAGAAAT---------TCATCA--------C--TCCTTATAA-----CTATTTCAA-CCTCAT-CCGGATGATATTATT--TCGAGGAAATTGT----TT-GGAGGAT-ATTCTGTTTTCA-GCAGACATCTTAATGCAATTTCGAAGGG-T--C------------TCTCCTTGCGTGTCTCCTTA-CGAGGTATT---TG----CTT-ATGA-AGGACACATGACTACAATATTATCTCatgt
gi|8 : tcgttttgtttgcccatttcccttctcaatgtggctttcactgtaaagacgatCTGGAGCCTCAGGATATAA-TA-TAATATA---ATA---TACGAGAGCG----TCTG--TGAT-GT-CT-A--TATAA-CGTTT-----AAG-ATAAAA-TATA-GCA--C-TGC-TGAAATCATA---TA--AATAT--AGATATATAT---------T---TT------------CAAAGAAAATTTTAA-A-TAA-AATGATA--TAACAAG--ATGTCAAGTATCGA--G-------------GAAACTTCTGCAACCAAACCT-----------T--------------CTAAT-CTCAACTTTTTGAT-A-T-CCTC-------A-------GG---CT-------------------A---TA--TT-TGTC------G--C--A-GCTAT---CATGC----AGC-----ACACCAATATTGTCAG-TATAAAA------CGCTAATCACA-TCTTATAT---ATAATGTCT-GCC--AGCATTGTGATGCAACT--TGTT---------TAA--------AT---------AA-TAA-TA-ATA-A---CTTC-------TCAA-CTTTGGAT--GCAAATGCC-G-CT--CAAATATTCTCCACAACTTT-A-AATT-T---ATCT-GTGAT-A---GA-T----TTG-AAGTTC--AGAAATTTTCA-CAA---ATTTCTTTTCAT---ATTCATA-AAGT---CATAAAATAT-------A------A---------T----------------------TAA-----CTAGTTCAA-CCTCATCCAAAATGA-ATT-TCATTCAAGGAAATT-TAGT-TT-AG-GGAT-ATTCTGTTTCCCTGCAGACATATTAA
gi|9 : tttgcatgtggaatattcgagttcattcaaatagacatttctacaattatctgttcgcttataagataattagataaagtctctcaggaatatataatatagataataaataaatatatagaagagatGAGC-TCTGGATACAT-TT-TG-TGTC---T-A-GTTGCGAGAGC-----TTT------------TGA--TAAAA-CGTAT-----ATA-GTACAACTTTA-GCAAACCTGC-TGAAA--ATC---TATAATTTCCCAG-TTT-TCTAT-------T---TTTTCCAA---TTTCAAAGACAATTTTAA-A-TAA-G-T---A--TCAAA-GGAACTTCC-GTAACCA-----------------AA----------------CA-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------AATACTCAGG---AT----CCTGTGCCA------A---TC--TT-TGTC------A--C--A-GCT-T---CATCA----AGT-----AAACCAATATTGTCAGTTCTAGAT------AGTTCATCACA-AC-TTTTT---AT-ATCTCT-GCC--AGCATTG-GATGCAATT--TCTT---------TAA--------AGTGTATATG-AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-AC-TTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGAT-A---GA-T--A-TTT-AAATCC--ATAA---TGCC-CAA---TTTTCTTTCAATA--TTTCATA-ATGTC--CAT----TTT-------T------TAAGAAA---TTCATCA-------C--TCCTTATAA-----CTAGTTC-ATCCTCAT-CAGGATGACATT-GT--TCAATGAAATTGTAATCTTGGG-GGAT-TTTCTGTTTTCA-GCAGATATCTTAATGCAACTTC---TGA-TG-AA--CATAATCAG--GCCC--CCTGCATCATTG-GCAA
blockSeqs : C G A C A G A GGTCTTTTGTGAATGTA AC A A CCAGT T C . AA C T TCA TCATAATTTTCAACG A C CTTATTTTTTTTTTCCAATT C A T A G C A GA C GGAAACTTCTGCAACCAAACCTT A CA T . TC T AATACTCAGGATCCTGTGCCA GGA AT G TTCTTTGCTC C A TGT T TCATG AA G . G TTA C TT A A . CA T TC C TGAAGTGTA AGTGTATATG AGC C . C . . C C T T A C G . TC A C T . . CT C . TGAAT . T AGA A . T ATT AA GTTT C ATTT G AA AAAA TTTAAGAAATTCATCACTC T ATTAG AT C C A AT G A A . G T G GCCACCAATGG C TG A G C TTA C T . G A T C C T G . . . T G
blockSeqs : . G . . . . C GTCTTTGTGAATGTA . . T . . C . . C . A TATAATTATCCCAG . C TGTTTTTCCAAATAT . . A . T G . . T GGAACTTCCGCAGCCAAACAT . . T . TT . CATACTCAGGATCCTGTGTC . . . ACC . . . A . AA G . . TT T . . C . . . . T . AGTGTATAT GC . . . . . C A . . . . . . . . T T . . TC . . TGGT . . GT . . T . C T C GA . . . TTAAGAAATTCATCACTC T . AA . T . T . . A . G . . GCAAATAGT C . . G T TTG C . . G A T . C . . . . . T G
blockSeqs : . G . . . . . GTCTTGTGATGTA . . T . . C . . C . A GATAATTTTCCAG . T TGGTTTTTCCAATTT . . A . A C . . T GAACTTCTGCAACCAAACCT . . . . T . CATATCAGGATCTGT . . . GC . . . A . AA G . . TA A . . G . . . . G . GTGTATATA GC . . . . . C . . . . . . . . . T T . . T . . TGAT . . A . . G . A T T AA . . . TCAGAAATTCATCACTC C . AA . C . T . . A . G . . GAACATAAT C . . G C ATG . . . G
blockSeqs : . G . . . . . GTCTGTGATGT . . T . . T . . C . A TATAATTTCCCAG . C ATTTTTTCCAATTT . . A . T G . . T GGAATTCCGTAACAAACT . . . . T . CGCCTCGAGG . . . GC . . . A . CC A . . TA A . . G . . . . G . AT GT . . . . . C . . . . . . . . . T T . . T . . TGAT . . A . . A . A T T AA . . . AACGAAATTCATCCT T . AA . . . . . . A . G . . GCAAGGG C . . . T ATA
blockSeqs : . G . . . . . GCTTTT . . A . . C . . C . A CAGTTTAAGG . C TCTTTCT . . A . T G . . T AGAACTT . . . . T . AAGACTC . . . GC . . . A . AA A . . TA A . . G . . . . G . A TA . . . . . C . . . . . . . . . . T . . T . . TGT . . A . . A . A A T AA . . . CCCCCC T . AT . . . . . . A . G . . GCAATAG . . . . .
blockSeqs : . G . . . . . TTT . . T . . . . . C . A TAAATATAGA . A TCTTTCT . . T . T C . . T GGTACTT . . . . C . AGGCTC . . . AC . . . C . CA G . . TC T . . C . . . . C . A GC . . . . . C . . . . . . . . . . T . . T . . G . . . . . T . C A C AT . . . TTTTTT . . A . . . . . . A . G . . CAATAGT . . . . .
blockSeqs : . G . . . . . TT . . A . . . . . . . . CATTTAAG . C CTTTTT . . A . A A . . C GGTACTT . . . . T . AGGCTC . . . GC . . . A . AA A . . TT A . . G . . . . G . A G . . . . . . . . . . . . . . . . T . . . . . . . . . . . G . A A C A . . . TTTCC . . A . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . TT . . . . . . . . . . . CCAG . . TTT . . A . A C . . . GGTACTT . . . . T . AGGCTC . . . AC . . . A . A G . . T T . . C . . . . C . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . C A . A . . . AAT . . A . . . . . . . . .
blockSeqs : . . . . A . . . . AACAT . . . . T . AGGCTC . . . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . AGGCT
blockSeqCons : *** GTCTTTGTGATGT****** TATAATTTCCAG***** TTTTTCCAATTT*************** A* N** AGGCTC*********************************** GC********** A**** ****** TN* *** ** A****************** ******* TGT** *** ** TTAGAAATTCATCCTC*************************** GCAATAGT**** NTG
originalCons : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG--CTTTTG--TGA--GTACTGA--TATAA-CGTNT-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAA--ATC---TA--ATTTTCCAGGTTT-TCT---------T---TTTTCCAA---T--CAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-G--ATTTCAAGTATCGA--G-------------GAA----------------CT-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-C-------A-------GG---CT----C--------------A---TC--TT-TGTC------G--C--A-GCT-T---CATCA----AGC-----AAACCAATAGTGTCAGTTCTAGAA------CGTTCATCACA-AC-TNTNT---AT-ATNTCT-GCC--AGCATTG-GATGCAACT--TNTT---------TAA--------A----------AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGG--A---GA-T--A-TTT-AAATTC--ANAA---TTCA-CAA---TTTTCTTTCAATA--ATTCATA-ATGTC--CAT----TTT-------T------T---------T-------------C--TCCTTATAA-----CTAGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGACATCTTAATACAACTCCAAAGGG-TG-CA--AATGGTTTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTTTGTTCTCTCCAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGGTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
finalCons : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCGTCTTTGTGATGT------CTGA--TATAA-CGTNT-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAA--ATCTATAATTTCCAG-----TTT-TCTTTTTTCCAATTT---------------CAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-G--ATTTCAAGTATCGA--G-------------GAA----------------CT-----------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-CAGGCTC-----------------------------------A---TC--TT-TGTCGC----------A-GCT-T---CATCAA----GC-----AAACCAATAGTGTCAGTTCTAGAA------CGTTCATCACA-ACTN-TNT---AT-ATNTCT-GCC--AGCATTG-GATGCAACT--TNTT---------TAAA------------------AA-GCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT-T-GGAT-T-GTGT--A---GA-T--A-TTT-AAATTC--ANAA---TTCA-CAA---TTTTCTTTCAATA--ATTCATA-ATGTC--CAT----TTTTTAGAAATTCATCCTC---------------------------CTTATAA-----CTAGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGACATCTTAATACAACTCCAAAGGG-TGCAATAGT----TTGTCTCCT--CCTGCATCATTA-CCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTNTGTTCTCTCCAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGGTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCTGAGGAACATCGTTGGAGGGATAATGCGTGCGTAATGTCTCATTCTTGTCGTGAATATTAATTGAATTTCAGCTTGATCACGGGCACACCCTCTACAAATCAGTTGAGTTTCCAATCTTTTGCATGCTGGGATGAACATGCACAAGTCTCTATTTTCAACATCTTGCGAGCATGTCCATCCTTTCAGCCAACCTTCTGGAAAAGAAAAACCCGGGCAAAGTTCAGCCTTTTTAGATGCTGTATCATATGTGCATTTGAGTTTACATGTTCGTTTTATGATTTCATAAAAATTTCCTCCACTTTTTCGTTTGGCCCATTCCCACTTACATCATCCTTATTAACTCTACACGTGTAAGTCTTGCCTGCATCTCCCTCTTCTTGCATTGTATAAAGTTATCTACACATGTTAAGCAACTTTCT
Unaligned ( gi|12 ): CTTGAGGACCACCATAGGAGGGATAATGCGTGCAGACATGTCTCATCTGTCGCTGAATGTTAATTGAATTTTTAGCCTGATCACGGGCACACTTCTACACATTGGGATGAAATGTGCAAGTCCCCTATTTTCAACATCTGCGACCATGTCCAGTCCTCTGGAAGAAGTTCCGGCACAAGTTCAGCCTTTTTAAAGGACTGTAGATATGTGTATTGAGTTTACATGTTGTTTTTATATCTTCATAAAGTTTCACTCGTTTTGTTTGCCCATTTCCCACTTA
Unaligned ( gi|13 ): TTTTCAGCCTGATCGCGGGCACACTTCTACATAATCAGTTGAGTTTCCAATCTTTGCATGTTGGGATGAAATGTGCAAGTCCTCTATTTTCAACATCTGCGAGCATGTCCAGTCCTTTCCACCAATCTTCTGGAAGAAGTTCCGGCACAATTTCAGCCTTTTTAGAGGAATGTAGATATGTGTATTTGTAGATATTTGTATTTGAGTTTACATGTTGTTTTTATATCTTCATCAAGTTTCCCTCCACTCGTTTTGTTTGCCCATTTCCC
Unaligned ( gi|14 ): TCTTGAGGAACATCATAGGAGGGATAATGCGTGCAGACATAACGTCTCATATGTCGCTGAATATTTATTGAATTTTCAGCCTGATCACGGGCACACCTCTACATAATCGGTTGAGTTTCCAATGTTTGCATGTTGGGGTGAACATATGCAAGTCCTTTATTTTCAACATCTGCGGGCTTGTTTAGGCCCTTCCAGCAATCGTCTTGAAGTACCGGCACAAATTCAGTT
Unaligned ( gi|16 ): TTTGGAATACTTTGAGAATTTAGGGAGTTTTTTATGTAAGTTTAAAACGCACACATTCTGTTCTTACGGATCAGAAAGATGCTTGTTAACAAGTTGATAAACGATTAATGTCGCACCTGGTTTCGCAGCAATGACGACACAATGGTCAACAGTACGACGTTGAGCAGCGGACTCATCTCTGGT
Unaligned ( gi|19 ): TCTTGAGGAAACCGTAGGAGGATAATGCGTGCAGATATAATGTCTCATTCTGTAGATAGATATAGGATATCAGTCTGTCACAAGAGACACCCTCTACATCATCAGTTGAGTTCCCAATATTTGCATGTGGAA
Alignments
lowQualScore : 111 77777777777777777 11111111 2222222222222222 4444444444444 2222222 777777777777777777777777777777777777777777777777777777777777777 555555555555555555555555555555555555555555 2222222222 11111 11111 111111 111 11 66666666666666666666666666666666 1111111 1 33333 22 1111 222222 3333333333333 111 1 11 222222222222222222222 11 1 1 11 1 1 1 1 1
lowQualScore : 4 1 4 4 4 222 8 00000000000000000 66 2 66 11111111 4 8 4 66 1 4 7 4444444444444444 666 0 1111111111111 1111111 0 8 4 9999 99999 4 66 0 4 55 222222222222222222222222222222222222222222222222222222222222222 3 55 7 3 444 444444444444444444444444444444444444444444 777 55 4 0000000000 4 4 777 44444 00000 11 0 1 111111 0 4 666 1 333 4 1 4 00 4 66 1 55555555555555555555555555555555 2 4 4 4 4 4444444 1 8 4 4 4 4 4 4 66 4 9 4 4 555 4 4 44444 4 00 66 1 777 0 99 8888 2 2222 4 1 333333 2222222222222 777 4 9 4 66 4 4 1 4 4 5 222222222222222222222 66 5 55 5 333 0 0 33 2 7 7 3 6 3 6 3 3 3 7 6
lowQualScore : . . . . . ... . ................. .. . .. ........ . . . .. . . . ................ ... . ............. ....... . . . .... ..... . .. . . .. ............................................................... . .. . . ... .......................................... ... .. . .......... . . ... ..... ..... .. . . ...... . . ... . ... . . . .. . .. . ................................ . . . . . ....... . . . . . . . . .. . . . . ... . . ..... . .. .. . ... . .. .... . .... . . ...... ............. ... . . . .. . . . . . . ..................... .. . .. . ... . . .. . . . . . . . . . . . .
lowQualScore : 4 1 4 4 4 222 9 88888888888888888 11 6 11 99999999 4 4 4 11 1 4 3 3333333333333333 111 1 1111111111111 3333333 6 0 0 8888 11111 0 88 7 0 55 555555555555555555555555555555555555555555555555555555555555555 6 00 3 6 111 777777777777777777777777777777777777777777 000 55 0 4444444444 0 0 000 33333 00000 44 8 4 555555 8 0 222 0 999 4 0 4 66 4 11 0 11111111111111111111111111111111 9 4 4 4 4 4444444 1 9 4 4 4 4 4 4 11 4 9 4 4 333 4 4 88888 4 66 11 0 000 6 55 4444 3 8888 0 0 666666 6666666666666 777 4 6 4 99 4 4 9 4 4 0 222222222222222222222 99 0 77 3 222 0 0 88 5 3 3 3 7 3 7 3 3 3 3 7
consensus : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG-TCTTT-GTGA-TGT-CTGA--TANAA--CGTN-T-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAAATC-T-ATAATT--T-CC-AG-T-TTTCT---------T---TTTTCCAA-TT-TCAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-GATTTCAAGTATC-GA--G-------------GAA----------------CT--------------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-------C-------AGG---CT----C--------------A---TC--TT-TGTC------GC--A-GCT-T---CATCA----AGC-----AAACCAATAGTGTCAGTTCTAGAA------CGTTCATCACA-AC-TNTNT---AT-ATNTCT-GCC--AGCATTG-GATGCAACT--TNTT---------T-AA--------A----------AAGCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-AC-TTTCTCCACAACTTT-G-AATT-T-GGAT-T-GT-GA-TAGA-TA-TTTAAATTC--ANAA---TTCA-CAA---TTTTCTTTCAATA--ATTCATA-ATGTCCATTTTTT---A--GAAAT-TCATCACTCCTTATAACTAGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGACATCTTAATACAACTCCAAAGGG-TG----CA-A-TGGTTTGTCTCCT--CCTGCATCATT-ACCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTTTGTTCTCTCCAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGGTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
Reference ( family-410 ) : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG-TCTTT-GTGA-TGT-CTGA--TATAA--CGTN-T-----ACA-GTACAACTTTA-GCA--CCTGC-TGAAAATC-T-ATAATT--T-CC-AG-T-TTTCT---------T---TTTTCCAA-TT-TCAAAGAAAATTTTAA-A-TAA-A-TGAAN--TNACA-GATTTCAAGTATC-GA--G-------------GAA----------------CT--------------T--------------TTAAT-CC--ACTTTT-GAT-A-T-CC-------C-------AGG---CT----C--------------A---TC--TT-TGTC------GC--A-GCT-T---CATCA----AGC-----AAACCAATAGTGTCAGTTCTAGAA------CGTTCATCACA-AC-TNTNT---AT-ATNTCT-GCC--AGCATTG-GATGCAACT--TNTT---------T-AA--------A----------AAGCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT-T-GGAT-T-GT-G--TAGA-TA-TTTAAATTC--ANAA---TTCA-CAA---TTTTCTTTCAATA--ATTCATA-ATGTCCATTTTTT---A--GAAAT-TCATC-CTCCTTATAACTAGTTC-A-CCTCAT-CAGGATGACATT-TC--TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGACATCTTAATACAACTCCAAAGGG-TG----CA-A-TAGTTTGTCTCCT--CCTGCATCATT-ACCAATTATTGCGTGGTCTCTTCACGAGGGGACACATGGCTACTNTGTTCTCTCCAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGGTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
gi|1 : C-TCTG-ATACAT-TT--G-TCTCGGATTA-GTTGCGAGAGA---CTTC------TG----GA--TAAAAACTGTAAT-----ATA-GTACAACTTTATGCA--CCTGC-CTGAAATC---ATAATT--T-CCCAGAT-TTTTTGTTG-----T---TTTTCCAAATT-TCAAAGACAATTTTAATA-TGCTA-TGAAGGCCAACA-GACTTTATTAATC-AAAGG-------------GGA----------------CT--------------T--------------GTAAT-CC--ACTTTT-GATGA-T-CT-------C-------CAG---CT----CTCAGTCCTGTGTCTA---TC--TT-TGTC------ACTAG-GCT-T---CATCATCCGACC-----AAACCAATAGTGTCAGTTCTAAGATCAGTTCATTCATCACA-AC--GTGTTAAAT-ATCTCTTGCCC-AGCATTG-GAT-CAATT--TCTT---------T-GA--------AGTGTATATAAAAGCC-TTTGCA-AGATTTTCATTTGCTTCA--C-TTG-AT-CGC-AGTG-T-GGCT--C-ACTTT-CTCCACAACTTTTGTGATT-T-GGAT-TCGTTGATTAGA-TG-TTTAAATTTCGATGA---TGCC-CAA---TTTTCTTTCAATG--ATTCATA-ATGTC
gi|11 : caagggcaacacttctacataatacagttcagtttcaatctctgcatgctggataacatgcacaaagtacactctactttacaacaaatcttgcgaagccgatgctcctcagtccttcccaagccaccttctagtgtaaagaaaaaaccggcacaagtttgccagctctttttgtagaggagctaagtatatatgtgcatttgagttgtacatgtgtttattatatctttcatcaaaatttccctctccatctctttcgttctagcccatttccccactataatcatccttagtactccttggcagtgtaagtctagttgcatcaaccctttcttgccatttgtaaaagttaatactacaataggttagcaattttctttacaatttgtaaagtaaactcgagttcatttcagaatagacatccttctagcaattctctgttcgtttgggttgataaatgtctcccagcttctcaataatggattttgcactttctaagacgatctcggagttaacAGTCT--AG-GGATTATTCTGTTTC-A-GCAGACATCT-AATACAACTCCAAAGGG-TG----CGCA-TGGTT-GTCTC-T--CC-GCATTCTT-ACCAATTATTGCGTG-TCTTTTCACGAGGGGACACATGG-TACTT--TTCTCTCCACGAA-TTTCCCAATATGGATGATGGTACGTAC-GTATTGCGTTGT--GGTCTCAACAA-AAAGTT-CCCAA-C-TTTGTCGGTGTGTTTTAGGACATTTGGAATATTTGTGAGAA-TTAG--ATATTTTTTa
gi|15 : AG---TTCAACAA---TGTT-TTTCAATA---TTCATA-ATGTGCATTTTTC---A--GAAAT-CCATCACTCCTTATAACTACTTC-AACCTCAT-CAGGATGCCATT-TT--TCAAGGAAATTGTAGTCTT-GG-GGAT-ATTCTGTGTTCA-GCAGACATCTTAATGCAACTCCAAATGG-TG----CA-A--GGGTTGT---CT--TCTGCGCCATT-ACAAATCCTAGCGT-GTCTCTTCACGAGGgtaaggttataaacgcacaaccattgtgtgattattaaagaatcagacgatgtgttactaaccacagttcgtatagagactaatgcctgcactgtcacagacacgggtacgacgtcctgagcacgcggactcatctct
gi|17 : aTAAT-CC--ACTTTT-GAT-A-T-CT-------C-------AAGA--CT----C--------------AGGATC--CTGTGTC----------A-TCT-TTGTCACCA----TGCTCATGAAAGCAATAGTGTCAGTTCTAGAA------AGTTCA--ACA-Aa
gi|18 : aatgtcaagattaatgttgcaaataatgcaacacatgacaatgaataggtaataa-A-CCTCAT-CAGGATGA-ATT-TCT-TCAGGGAACTTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCAGCCATCTTAATACAACTCCAAAGGG-TG----CA-A-TAG-TTGTCT-CT--CCTGCATCATT-ACCAATTATTGCGT-GTTTCTTCACGAGGGtgtttttcaatat
gi|2 : aGGAGC-TCTGGATACATATT-TG-TCTC---TTC-GTTGCGAGAGC-------------T-T-CTGA--TAAAA--CGTA-T-----ATA-GTACAACTTTA-TCA--CCTG--TGAAAATC-G-ATAATT--TTCC-AG-T-TTTCT---------TGT-TTTTCCAA-ATATCAAAGACAATTTTAA-AATAT-A-TGAAG--TCACA-GACTTTAAGTATC-AA--A-------------GAA----------------CT--------------T--------------TTAATACC--ACTTTT-GAT-A-T-CT-------C-------CGC---CT----CGAGG----------A---TC--TG-TGTCTTCTTTGCTCACGCT-T---CATCA-----GC-----AAAC-AATAGTGTCAGTTCTAGAA------CGTTCATCACAGAC-T-TCT---AA-ATATCT-CTC--AGCATTG-GATACAATTTCTCTT---------T-GA--------AGTGTATAT--AAG-C-TT-GCGCAG-TCTTA-------TCAACC-TTGGAT-CGC-AGTG-TGG-CTTCC-AC-TTTCTCCAC-ACTTT-G-AATTCT-GGAT-T-GT-G--TAGA-TGTTTTAAATTC---TAA---TGCC-CAA---TTTTCTTTCATTG--ATT-ATAGATGTCAAAATTTT---AACGAAAT-TCATC-CT-CTTATAA
gi|20 : ctatcacgggcacacttctaataatcagcttgagtttccaatcttgcatgctgggtgaacatgcacaagtctctattttcacatctgcgagcatgtccgtctttcagaaccttctggaaaagaaaaaaccgcggccagttcagccttttttaagagggtaattattgtgcatttgagtttaccatgttgtttttatttttcataaatttcctccctcttttcgtttgccccattttcccacttatcatccttatactctgcaagtgttaaagtttctgcatctcttcttcttgcattgtataaagttaatctacatgttgcatttctctaattggaagtaacctgagttatttcagaatagacatttctacaattctctgtttgtttgtttgataaagtctcccagctttctcaatatggatttcacttttaagacgatatg-TC-TCAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-GATTTCAAGTATC-GA--G-------------GTA----------------CT--------------T--------------TTAAT-TC--ACTTTT-GAT-A-TCCC-------C-------AGG---CT----C--------------tat
gi|3 : CCGGAGC-TCTG-AT-CAT-TTCTG-TGTCG--TTAAGTTGCGAGG-----CTTT-TTGA-TA---------AAAA--CGT--T-----ATA-GTAATACTTTA-GCA--C-TGC-TGAAAATC-T-ATAATTATC-CC-AG-T-TTTCTCTTATTTTTT---TTTTCCAA-TT--CAAAGACAATTTTAACA-TA----TGAAA--T-ACA-GA-----AGTATC-AA--G-------------GAA----------------TTCCGTAACAAAC---T--------------TTAAT-CC--ACTTTTTGAT-A-T-CC-------CCATATC-AGG---AT----CTGT-----------G---TCATTT-TGTC------ACC-A-GCT-T----ATCA-----GT-----AAACCA-TATTGTCAGTTTTAGAT------AGT-CATCA-A-AC-TTTTTTT-AT-ATCTCT-GCCCAGGCATTG-GATGCATTT--CTTT---------T-AAGTGTATATA----------AAGCCCTT-GCA-AG-T-TCC-------TCAAAC-TTGGATTCGC-AGTG-T-G-CT--C-AACTTTCTTCACAA-TTT-G-AATT-TCGGAT-T-GT-GAATAGATTA-TTTAAATCC--ATA-----TC--CAA---TTTTCTTTCAATATTTTTCATA-ATGTCCATTTTTTTA-A--GAAAT-TCATCACTCCTTATAACTAGTTC-ATCCTCAT-CAGGATGACATT-
gi|4 : gtgctgtatatatgtgtaatttgagtttacatgttgtttttatatttcatcaaattttcctccactcttttcgtttgcccatttctcactttacatcatcttaataactctgcaaagtgtcaagtcttctgcatctccttcttcttggcattgtataaaagttatctaacatgttagcaaatttcttaattggaaaaaaaaaaaaggtttttaaaaaaaaaaaaaaaactcgagttatttcaagaatagacatttctacaattctctgttcgtttggtttgataaagttcccagcttctcaatatggattcagtattaagacgatCTGGGGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG-TC-TT-GTGA-TGTACTGA--TATA----GTT-T-----CCA-GT-CAACTTTA-GCA---CTGCTTGCAAATC-TCATAATT--T-TC-AA-CGCTTCT---------T---CTT------TT-TCAAGAAAAATTTTAA-A-TAA-A-TGAAT--TCACA-GATTTCAAGCATC-GA--GAACTTCTGCAACCAAA----------------CC--------------T--------------TTAAT-CC--ACTTTT-GAT-ATT-CC-------C-------AGG---CT----C--------------A---TA--TT-TGTC------GC--A-GCT-T---CATCA----AGC-----AA--CAATAGTGTCAG-TATA-AA------CGTTAATCACA-AC-TATAT---AT-ATGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------T-AG--------A----------TG--T-TT-AAA-AA-GCTTC-------TCAA-C-TTGGAT-CGC-GGTG-T-G-AC--C-AC---TCTCCACAACTTT-G-AATT-T-GGAT-T-GA-GA-TAGA-T--TTAAAATTC--AGAA---TTTA-CAA---ATT--CTTCAAC--------------CCCCCCCCCC---A--GAAAT--------------TAGCTAGTTCAA-CCTCAT-CAAGATGA-ATT-TCT-TCAAGGAAATTGTAGTCTT-AG-GGAT-ATTCTGTTTCCA-GCACACATCTTAATAGAGCTCCAAACGG-TGCCACCA-A-TGG-TTGTCT-CT--CCTGCACCATT-ACCAAATATTGCGT-GTCTCTTCACGAGGGGATACATGACTACTTTATTCTCTCCAATAA-TT--CCAATATGTATGATGGTACGTACGGTATTGCGTgt
gi|5 : taggcccttccagcaatcgtcttgaagtaccggcacaaattcagttgataaagtcccccagcttctcaatatggatttcacttttaagacgatCTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTACGTTGCGAGAGCGGTCTTTTGTGAATGTACTGA--TATAA--CGTT-T-----CCA-GTACAA-TTTA-GCA--CCTGC-TGAAA-TC-C-A--GTT--T-AA-GG-C-TTTCT---------T---CTTTC-------TCAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-GATTTCAAGTATC-GA--G-------------GTA----------------CT--------------T--------------TTAAT-TC--ACTTT--GAT-A-C-CC-------C-------AGG---CT----C--------------A---TC--TT-TGTC------GC--A-GCT-T---CATCA----AGC-----ACCCCCAAAGTGTAAGTACTAAAA------CGTTAATCACA-AC-TATAT---AT--TGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------T-AA--------A----------AAGCC-TT-GCA-AG-TCTTC-------T-AA-C-TTGGAT-CGC-AGTG-T-G-CT--C-ACTTTTCTCCACAACTTT-G-AATT---GGAT-T-G------AGA-T--TTTAAATTC--AAAA---TTCA-CAA---ATTCTTTTCAATA--ATTCATA-ATGTCCATTTTTT---------------TT-TTCC--AGAAATTGTTC-A-CCTCAT-CAGGATGA-ATT-TC--TCAGGGAACTTGTAGTCTT-AG-GG-T-ATTCT--TTCCA-GCAGCCATCTTAATACAACTCCAAAGGGGTG----CA-AATAGTTTGTCTCCT--CCTGCATCATT-ACCAATTATTGCGTGGTTTCTTCACGAGGGGACACATGGCTACTTTGTTCTCT-CAAGAATTT--CCAATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTT-CCCAACC-TTTGTCGATGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTT
gi|6 : CTGGTGC-TCAGGATACAT-TT-TG-TCTC---TTA-GTTGCGAGAGCG-TCTTT-GTGAATGTACTGAACTATAA--CGTT-T-----CCA-GTACAA-TTTA-GCA--CCTGC-TGAAA-TC-C-AT------T-TA-AG-T-TTT-----------T---CTTTC-------TCAAAGAAAATTTTAA-A-TAA-A-TGAAT--TGACA-GATTTCAA-TATC-GA--G-------------GTA----------------CT--------------T--------------TTAAT-TC--ACTTT--GAT-A---CC-------C-------AGG---CT----C--------------A---TC--TT-TGTC------GC--A-GCT-T---CATCA----AGC-----A--CCAA-AGTGTAAGTACTAAAA------CGTTAA-CACA-AC-TATAT---AT-ATGTCT-GCC--AGCATTG-GATGCAACT--TGTT---------TAAA--------A----------AAGCC-TT-GCA-AG-TCTTC-------T-AA-C-TTGGAT-CGC-AGTG-T-G-CT--C-AC-TTTCT-CACAACTTT-G-AA-T-T-GGAT-T-G------AGA-T--TTTAAATTC--AAAA---TTCA-CAA---ATTCTTTTCAATA--ATTCATA-ATGTCCATTTTTTTCCA--GAAAT-T------------------GTTC-A-CCTCAT-CAGGATGA-ATT-CT--TCAGGGAACTTGTAGTCTT-AG-GG-T-ATTC--TTTCCA-GCAGCCATCTTAATACAACTCCAAAGGG-T-----CA-A-TAGTTTGT---CT--CTTGCATCATTAACCAATTATTGCGTGGT-TCTTCACGAGGGGACACATGGCTACTATGTTCTCT-CAAGAA-TT--CCAATATGTATGATGGTACGTACGGTATTACGTTGTAAGTTTTCACCAATAAAGTTCCCCAACCTTTTGTC-GTGTG-TTTAGGACATTTGG-ATATTT-TGAGAATTTAGGAGTATTTTTa
gi|7 : CTGGAGC-TCTGGATACAT-TT-TG-TCTC---TTA-GTTGCAAGAAC-------------T-T-CTGA--TATAA--CGTA-TCCAGTACATGTACAATTTTA-GCA--CCTGC-TGAAAATC-------------CC-AG-T-TTTCT---------TGGTTTTTCCAA-TT-TCAAAGAAAATTTTAA-A-TAT-A-TGAAA--TCACA-GA-----AGTATC-AA--G-------------GAA----------------CT--------------TCCGCAGCCAAACATTTAAT-CC--ACTTTT-GAT-A-T-CT-------CCATACTCAGGATCCTGTGTC--------------A---TC--TT-TGTC------AC--A-GCT-T---CATCA----CGC-----AAACCAATAGTGTCAGTTCTAGAT------AGTTCATCATA-AC-TCTTT---AT-ATCTCT-GCC--AGCATTG-GATGCAATT--TCTTTGAAGTGTAT-AA--------A----------AAGTC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGGT-CGC-AGTG-C-G-CT--C-AC-TTTCTCCACAACTTT-G-AATT-T-TGAT-T-GTGG--TAGA-TA-TTTAAATCC--ATAA---TGCC-CAAGTTTTTTTTTTCAATA--ATTCATA-ATGTCCATTTTTC---A--GAAAT-TCATCACTCCTTATAACTATTTCAA-CCTCAT-CCGGATGATATTATT--TCGAGGAAATTGT----TT-GGAGGAT-ATTCTGTTTTCA-GCAGACATCTTAATGCAATTTCGAAGGG-T-----C-----------TCTCCTTGCGTGTCTCCTT-ACGAGGTATT---TG----CTT-ATGA-AGGACACATGACTACAATATTATCTCatgt
gi|8 : tcgttttgtttgcccatttcccttctcaatgtggctttcactgtaaagacgatCTGGAGCCTCAGGATATAA-TA-TAATATA---ATA---TACGAGAGCG-TCT---GTGA-TGT-CT-A--TATAA--CGTT-T-----AAG-ATAAAA-TATA-GCA--C-TGC-TGAAA-TCAT-ATAAATA-T----AG-A-TATAT---------A---TTTTC---------AAAGAAAATTTTAA-A-TAA-AATGATA--TAACAAGATGTCAAGTATC-GA--G-------------GAAACTTCTGCAACCAAACCT--------------T--------------CTAAT-CTCAACTTTTTGAT-A-T-CCT------C-------AGG---CT-------------------A---TA--TT-TGTC------GC--A-GCTAT---CATGC----AGC-----ACACCAATATTGTCAG-TATAAAA------CGCTAATCACA-TCTTATAT---ATAATGTCT-GCC--AGCATTGTGATGCAACT--TGTT---------T-AA--------AT---------AATAA-TA-ATA-A---CTTC-------TCAA-CTTTGGAT--GCAAATGCC-G-CT--CAAATATTCTCCACAACTTT-A-AATT-T---ATCT-GT-GA-TAGA-T--TTGAAGTTC--AGAAATTTTCA-CAA---ATTTCTTTTCAT---ATTCATA-AAGT-CAT-----------AAAATATAAT---------TAACTAGTTCAA-CCTCATCCAAAATGA-ATT-TCATTCAAGGAAATT-TAGT-TT-AG-GGAT-ATTCTGTTTCCCTGCAGACATATTAA
gi|9 : tttgcatgtggaatattcgagttcattcaaatagacatttctacaattatctgttcgcttataagataattagataaagtctctcaggaatatataatatagataataaataaatatatagaagagatGAGC-TCTGGATACAT-TT-TG-TGTC---T-A-GTTGCGAGAGC----TTT-----------TGA--TAAAA--CGTA-T-----ATA-GTACAACTTTA-GCAAACCTGC-TGAAAATC-T-ATAATT--T-CCCAG-T-TTTCTAT-------T---TTTTCCAA-TT-TCAAAGACAATTTTAA-A-TAA------------------------GTATCAAA--G-------------GAA----------------CTTCCGTAACCAAACAT--------------TTAAT-CC--ACTTTT-GAT-A-T-CCCAATACTC-------AGG---AT----CCTGTGCCA------A---TC--TT-TGTC------AC--A-GCT-T---CATCA----AGT-----AAACCAATATTGTCAGTTCTAGAT------AGTTCATCACA-AC-TTTTT---AT-ATCTCT-GCC--AGCATTG-GATGCAATT--TCTT---------T-AA--------AGTGTATATG-AAGCC-TT-GCA-AG-TCTTC-------TCAA-C-TTGGAT-CGC-AGTG-T-G-CT--C-AC-TTTCTCCACAACTTT-G-AATT-T-GGAT-T-GT-GA-TAGA-TA-TTTAAATCC--ATAA---TGCC-CAA---TTTTCTTTCAATA--TTTCATA-ATGTCCATTTTTTA--A--GAAAT-TCATCACTCCTTATAACTAGTTC-ATCCTCAT-CAGGATGACATT-GT--TCAATGAAATTGTAATCTTGGG-GGAT-TTTCTGTTTTCA-GCAGATATCTTAATGCAACTTC---TGA-TG----AACA-TAATCAG--GCCC--CCTGCATCATT-GGCAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCTGAGGAACATCGTTGGAGGGATAATGCGTGCGTAATGTCTCATTCTTGTCGTGAATATTAATTGAATTTCAGCTTGATCACGGGCACACCCTCTACAAATCAGTTGAGTTTCCAATCTTTTGCATGCTGGGATGAACATGCACAAGTCTCTATTTTCAACATCTTGCGAGCATGTCCATCCTTTCAGCCAACCTTCTGGAAAAGAAAAACCCGGGCAAAGTTCAGCCTTTTTAGATGCTGTATCATATGTGCATTTGAGTTTACATGTTCGTTTTATGATTTCATAAAAATTTCCTCCACTTTTTCGTTTGGCCCATTCCCACTTACATCATCCTTATTAACTCTACACGTGTAAGTCTTGCCTGCATCTCCCTCTTCTTGCATTGTATAAAGTTATCTACACATGTTAAGCAACTTTCT
Unaligned ( gi|12 ): CTTGAGGACCACCATAGGAGGGATAATGCGTGCAGACATGTCTCATCTGTCGCTGAATGTTAATTGAATTTTTAGCCTGATCACGGGCACACTTCTACACATTGGGATGAAATGTGCAAGTCCCCTATTTTCAACATCTGCGACCATGTCCAGTCCTCTGGAAGAAGTTCCGGCACAAGTTCAGCCTTTTTAAAGGACTGTAGATATGTGTATTGAGTTTACATGTTGTTTTTATATCTTCATAAAGTTTCACTCGTTTTGTTTGCCCATTTCCCACTTA
Unaligned ( gi|13 ): TTTTCAGCCTGATCGCGGGCACACTTCTACATAATCAGTTGAGTTTCCAATCTTTGCATGTTGGGATGAAATGTGCAAGTCCTCTATTTTCAACATCTGCGAGCATGTCCAGTCCTTTCCACCAATCTTCTGGAAGAAGTTCCGGCACAATTTCAGCCTTTTTAGAGGAATGTAGATATGTGTATTTGTAGATATTTGTATTTGAGTTTACATGTTGTTTTTATATCTTCATCAAGTTTCCCTCCACTCGTTTTGTTTGCCCATTTCCC
Unaligned ( gi|14 ): TCTTGAGGAACATCATAGGAGGGATAATGCGTGCAGACATAACGTCTCATATGTCGCTGAATATTTATTGAATTTTCAGCCTGATCACGGGCACACCTCTACATAATCGGTTGAGTTTCCAATGTTTGCATGTTGGGGTGAACATATGCAAGTCCTTTATTTTCAACATCTGCGGGCTTGTTTAGGCCCTTCCAGCAATCGTCTTGAAGTACCGGCACAAATTCAGTT
Unaligned ( gi|16 ): TTTGGAATACTTTGAGAATTTAGGGAGTTTTTTATGTAAGTTTAAAACGCACACATTCTGTTCTTACGGATCAGAAAGATGCTTGTTAACAAGTTGATAAACGATTAATGTCGCACCTGGTTTCGCAGCAATGACGACACAATGGTCAACAGTACGACGTTGAGCAGCGGACTCATCTCTGGT
Unaligned ( gi|19 ): TCTTGAGGAAACCGTAGGAGGATAATGCGTGCAGATATAATGTCTCATTCTGTAGATAGATATAGGATATCAGTCTGTCACAAGAGACACCCTCTACATCATCAGTTGAGTTCCCAATATTTGCATGTGGAA