lowQualScore : 2222222222222222222 1111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111 111111111111111111111111111111111
lowQualScore : 1111111 11 4444444444444444444 111111111 4444444444444444444444444444444444444444444444444444 2222 1111 111111 111111 2222222222 777777777777777777777 111111 22222222222 555555 11 66666666666666666666666666666 111 888888888888888888888 11 111 1111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 33333 11 777777777777777777777777777777777777777 22222 1 22 1 1111 2 1 7777777777777777777777777777777777 1111111 1 000000000000000000000000000000000 22222 1 1 8888888888888888888888888888888888888
lowQualScore : 5 8888888 00 2222222222222222222 4 4 777777777 4 4 4 0 2222222222222222222222222222222222222222222222222222 6 6 6 6 77 0 5 3 5 888 3333 3333 333333 888888 3333333333 444444444444444444444 77 6 555555 6 6 6 77 11111111111 777777 6 2 66 0 44444444444444444444444444444 8 8 6 444 1 88 000000000000000000000 0 8 11 0 0 77 444 5 8 0 8 7777 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 55 11111 8 11 8 6 777777777777777777777777777777777777777 00000 0 22 0 3333 3 1 7 6 5 1 6 1111111111111111111111111111111111 3 6666666 3 3 000000000000000000000000000000000 00000 7 5 3 1 0 0 7 3333333333333333333333333333333333333 5 5 4 5 5 5 77
lowQualScore : . ....... .. ................... . . ......... . . . . .................................................... . . . . .. . . . . ... .... .... ...... ...... .......... ..................... .. . ...... . . . .. ........... ...... . . .. . ............................. . . . ... . .. ..................... . . .. . . .. ... . . . . .... ......................................................................................... . .. ..... . .. . . ....................................... ..... . .. . .... . . . . . . . .................................. . ....... . . ................................. ..... . . . . . . . ..................................... . . . . . . ..
lowQualScore : 0 8888888 44 3333333333333333333 4 4 888888888 4 4 4 2 9999999999999999999999999999999999999999999999999999 7 7 7 0 99 7 7 0 7 666 3333 0000 111111 444444 2222222222 888888888888888888888 99 7 888888 7 0 7 33 11111111111 888888 0 5 22 2 99999999999999999999999999999 0 0 0 000 0 88 444444444444444444444 8 0 00 8 8 44 000 6 0 8 0 0000 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 22 00000 0 00 2 0 666666666666666666666666666666666666666 00000 0 88 0 5555 2 6 8 2 0 4 7 0000000000000000000000000000000000 2 0000000 5 3 111111111111111111111111111111111 00000 0 0 7 4 1 2 2 8888888888888888888888888888888888888 0 0 1 0 0 7 11
consensus : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCAGG----------------GGTCG-GGA-AC---------CGACCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---AGG---TCTGG---GG---CC-GCTCAAGGCC-CC--AGAAGCTCT-TGGGTAA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGACCT---AAAAA-C--TAC---TG-CTGTAATAAC----CATTT---T---TN-AAAAGAA---TCTTTT--TTTTT-T---TGAGTTAT--CATACGAAGG-AC---A-NTG-AGATTGA-CGGAAAG-CGTAAAATTACT--TTACT---GGGTGTTACCAAAAGTCTTCAGG-CCCT---AAGA-----AGAG--TATCTCAA-AG-TACA---AATGAAGTGTTT-GA---GCGCGATTAATA---TAAGAAATA-CACT--AATTTTGTAATTCTATT---AAATACT-ACTTGGTTTCT-TA----GAACT--N---TCCAAAATCTG-CCTC---TCCGTGTCTTGGTAGAAAC-GAA---C----AACC--ACGT--AGTA-N-CAAAGAAACTGTC-ATTGTTTTCCATTTATGGT-TTT--CTGATTTCTCACG--------------TTTCGA-GTCATGT-T---AT----TTGACG-----C-GACAAC-ACA-AAAC-T-NACAATACCGGAAATAACGCCGTNTACGTTGACGGAATCGAATAAATCTCCGCATA-T-----ACA-T-AG-----TCAG-A-CAT----G-CATAAC--C----CAGAT-CAACTAAT--CATA----GCGAACG----------------GAATTGCAATGTTAC-----AGTAGAAAGATCATCAAAAAGAGATTGATTGATAGATAG-A---G------------TTTTT-CT-TTCT---CCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
Reference ( gi|1 ) : AGGGGCGTAGCTA-GCTG----T-AA-GTGATATGCACGCAGGATCGGGTCAGTCGCAGGGTCG-GGA-AC---------CGACCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---AGGTT-TCTGG--TGG---TC-GCTTAAAGTCACC--AGAAGCTCT-GGGGTAA-AT-C-GTGCAAAATTC--TGCA-TTCTCGC-CATTTCCT-G-GGACCT---TAAAA-C--TAC---TG-CTGTAATAAT----CATTT---T---TT-AAAAGAATTATCTTTTCATTATT-T---TGAGTTAT--CATACGAAGG-AC---A-GTG-AGGTTGA-CGGAAAG-CGTAAAATTATT--TTACTCTTGGGTGCTACCAAAAGTCTTCAGGACCCT---AAGA-----AGAG--TATCTCAA-AG-TGCA---AATGAAGTGTTT-GA---ATGTAATTAATAATTTAAGAAATA-CACT--AATTTTGTAATTTTATT---AAATACT-ACTTGGTTTCT-TA----GAACT--T---TCCATATTATG--TTC---TCTATGTCTTGATGGAAAC-GAA---C----AGCC---CGT--AGTA-T-CAATGATACTGTCGATTGTTCTCCATTTATGAT-TTT--CTAATTTCCCACG--------------TT-----------------AT----TTGACG-----C-GACAAC-CCA-AAAC-T-GACAATACCGGATATAACACCGTATACGTGGACAGAATCGAATAAATCTCCGCATA-T-----ACAGT-AG-----TCAG-A-CAT----G-CATAAC--C----CAAAT-CAACTAAT--CATA----GCTAA------------------GAATTGCAATGTTAC-----AGTAGATAGATAATCAAAAAGGGATTGATTGATTGATAGTA---G------------TTTTT-CT-TAGT---CCTC-CG-ATATGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|4 : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACACAGG-----------------GTCG-GGA-GC---------CGACCCTGCC-CACCTCGAAGA-GATGGCCT-TACGGC---AGGGG-TCTGG--GGG---TC-GCTCAAGG-AACCT-AGAAGCTCCGGGGGTAA-AT-C-GTGAAAAATCC--TGCA-TT-TTGC-TATTTCCT-G-GGACCT---AAAAA-T--TAC---TG-TTGATATAGC----CATTT---TAAAAA-AAAAGAAATTTCTTTT--TTTTTAT---TGAGTTAT--TATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAG-TGT--AATTACT--TTA-----GGGTGTTACCAAAAGTTTTCAGG---------------------------------G-TACA---AATGAAGTGTTT-GA---GCGTGATTAATA----AAGAAATA-CACT--AATTTTGTAATTCTATT---AAATACT-ACTTGGTTTCT-TA----GAACT--T---TCCAAAATATG--CCC--------------GTAGTAGC-AAA---G----AAAC---TGT---GTA-T----------TGT------TTC-CCATTAGTTTT-TTTCCCTGATTTCTCACGTTTCGACGTCGTGTTT-----------------AT----TTGACA-----C-GACAAC-ACA-AAAC-TGGAC-ATACCGGA-ATAA----------------AAATTCGAATAAATCT-----TA-T-----AC----AG-----TCAGCG-CA-----A-CATAAA--C----CAGAT-CAACTAA
gi|2 : AGAGGCGTAGCTA-ACTA----T-AA-ATG-TATGCACGTAG--------------C--GGTCG-GGACAC---------CGATC-TGCCGCACCTC-AAGACAGTGGCCT--ACGGC---AG-------------------------AAGTC--C---GAGGCGC----GTTAATAT-CCGCCCAAAATCCACT-CACTTCTCGCTCATTCCCT-G-GAACCTAAAAAAAA-C--TAC---TGCCTGTAATCGA----CATTT---C---GG-AAAAAAA-----CTTCCACTTTT-TTAATGACATATTCCATGCGAAGGCACCAAA-TTG-AGAATGA-CGTAAAGCCGTTAAATTATCTATTACT--------TTACCAAAAG-CTTCAGGCTCCA---AAGAGCAAGAGAG--TA-CTCAACAGTTACAATTAATGACAT-TTT-GAGCGATGC-ATTAA-----TAAAAAATACCACTTCCATTTT-TAA----ATTAAAAAATACTAACTTAGTTTCCGTACCACGAACT--G---TTCAAAATCTGACATCACATCGACGTGTT-AT-GAAACAGAAACCC----AACCACACCTCAAGTAGC-CAACTA-ATTGTCTATTGTTTTCCATC--TGGT-TCC--CTTTATTCTCACG--------------TTTCACGAACATGTCTTACAC----TTTACAACCGCC-GACAACATCACAAAC-T-TACAATACCGGAAATAACGCAGTTTACGTTGACGGAATCGAGCAAATATCCGCATA-T-----A---T-AT-----TCAG-T-CAA----A-CATAAC--C----CAGAT-CAATTAAT--
gi|10 : ccAGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCAGG-TCGGG--AACCG-----------A-AC---------CGACCCTGCC-CATCTCGAAGA-GGTGGCCT-TACGGC---AGG-------G---GG---CC-GCTCAAGGCCCTC--AGAAGCTCT-TGGGTAA-AT-C-GTGTAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGCCCT---AAAAA-CTATAC---AT-CTGTAATAAC----CATTT---T---T
gi|9 : AGGGGCGTAGCTA-GCAA------AA-ATGATATGCACGCA-----------------GGGTCG-GGA-AC---------CGATCCTGTC-CAACTCGAAGA-GGTGATCT-TACGG-----------CTGG--GGG---CC-GCT---------------------------AA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTACT---GGACCT---AAAAA-C--TAC---TG-CTGTAATAACCATGCATTT---T---TT-AAAAGA------TTTT--TTTTT-T---TGAGTTAT--CATACG
gi|8 : cAGGGGCGTACCTA-GCTA----T-AA-ATAATATGCACGCA-----------------GGGTCG-GAA-AC---------CGAACCTGCC-CACCTCGAAGA-GGTGACCT-TACAAC---AGGGGGTATGG---GA---TCCGCGCAA--TTACCCCAGAAGCTCT-TGGGTAA-AT-C-ATGCAAAATCC--TGCA-TTCTTGC-CATTTCCT-G-GGACC----TAAA----------------GTAACAAT------TTC---T---TT-AAAAAAAAGTTCTTTT
gi|5 : AGGGGCGTAGCTA-GCTG----TTAACATGATATGCACGCAGA----------------GGTCGAGGA-ACTCTACCCTTCGACCC-GCC-AACCTCAAAGA-GTTGGCCTATACG---------T-TATGG----G---TC---TTGG-----CC--------------GGTAA-ATTC-GTGCCAGATCT--TTTC-TTTTCGC-CATTTCCTTGTGGGCCT---AAAAAAC--TACAAGCG-CTTTAATAAC----TATTT---T---TTAAAAAGAATT---TT-------TT-T---GGAGT--T--CATACGAAGG-AC---ATTTGCATATTGACCGGAAAG-TGT-TAATTACT--TTt
gi|18 : AGGGGCGTAGCTA-GCTAATATT-AA-ATGATATGCACACAGG-----------------GTCG-GGA-AT---------CGATCCTGCC-TGCCTCGAAGA-AGTGGCCT-TACGGC---AGGtaaagtacaaatgaagtgttgagcgcgattaattaagaaatacactaatttgtaattcattaatactacttagttcttagaagtattgcgtccaaaatctgccttctcgtgtcttggcagaaacgtacagtccgtagtagaaaagaaactgtcattgttttcca
gi|20 : GGCGCGTAGCTATGCTAC---T-AA-ATGATATGCACGCA-----------------GAGTCG-GGA-AC---------CGACCCTGCC-CATTTGGAAGA-GGTGACCT-TACg
gi|16 : acg----T-AA-ATGATATGCACGCAGG-----------------GTCG-GGA-AT---------CAACCCTGCC-CACCTCGAAGA-GGTTGCTT-TACGACAAGAGG---TCTGGATTAGATACC-GCTCAAGGCCCCC--AGAAGCTCT-TGGGTcgg
gi|15 : aC--TGCA-TTATCGC-CATTTCCT-G-GGACCT---AGAAA-G--TAC---TG-CTGTAATCAT----GGTTTACAT---GC-AAAAAAA--ATTTTTT--TTA--------AAGTTAT--CATACCAAGG-AC---A-TTG-AGATTGA-CAGAAAG-TGTA
gi|11 : cTTTTT-T---TGAGTTGT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAG-CG-AAA--------TTACTCTAAGGTGTTATCAAAATACTTTAGTGCCCTAAGAAGA-----AGAG--TATCTCAA-AG-TACA---AATGAAGTGTTT-G-----TGC-------------GGAA--A-CACT--AATCTTGTAATTTTATT---AACTACT-ACTTGGTTTCT-TA----AA
gi|3 : TT-T---TTAGTTAT--CATACGAAGG-AC---C-GCG-AGATTGA-CGGAAAG-TGTAA--TTACT--TTA-----GGGTGTTAT----AGT-TTGAGG--CCT---CAGA-----AGAGAGTATTCTAA-AG-TACA---AATGATGTGTTTCGA---GCGTGATTAATAA-----GAAATA-AACT--AATTTTGTAATTTTAAA---AAATAGT-ACTTGGTTTCT-TA----GAACT--G---TC-AGAATCTG--CTC---TCCGTGTCTTGGCAGAAAC-GAA---C----AACC---CGT--AGTA-G-CAAAGAAACTGTCCATT-TT----ATTTA-GGT-TTT--TTGATTTCTCACG--------------TTTCGAAGTC---------ATGTTTTTGACG-----CAGACAAC-ACA-AAAAAT-TACAATACCGGGAATAACGCCGTTTACGTTGACAGAATTGAGTAAATCTCCGCATA-T-----ACAGTCAGACAACCCAG-ATCATTGAAGTCATTGCTGC----TAAATGTAACTGGT---GTA----TCTAACGCCATATATGGTGAATGGAATTGCAATGTTAC-----AGTAGAAAGATCATCAAAAAGAGATTGATTAATAGA-AGAT---T------------TTTTT-CTCTTTT---CCTC-CG-ATGTGCACGCACGTGG-CGTGTT-GGCGTATTAGGtagaa
gi|5 : TTTTAA-AG-TACA---AATGAAGTGTT--GA---GCGCGATTAAT----TAAGAAATA-CACT--AATTT-GTAATTC-ATT---AA-TACT-ACTTAGTT-CT-TA----GAAGTATTGCGTCCAAAATCTGCCTTC---TC-GTGTCTTGGCAGAAAC-GTA---C----AGTC---CGT--AGTA-G-AAAAGAAACTGTC-ATTGTTTTCCAgagctacgcgcct
gi|13 : aggggcgtagctagctgttaacatgatatgcacgcagaggtcgaggaactctacccttcgacccgccaacctcaaagagttggcctatacgttatgggtcttggccggtaaattcgtgccagatcttttcttttcgccatttccttgtgggcctaaaaaactacaagcgctttaataactattttttaaaaagaatttttttggagttcatacgaaggacatttgcatattgaccggaaagtgttaattacC---TCCGTGTCTTGGTAAAATC-GAA---CTTTGCGCCGTACGT--AG-A-TGCAAAGAAACT----ATTGTTTTCCATTTA-GGTATTT--CTGATTTCTCACG--------------T-------------------T----TCGACG-----
gi|6 : tgtctaaaatctgctctcccgaT-TTT--CTGATTTCTCACG--------------TTTCGACGTCATGTTT---AT----TTGATG-----C-GACAAC-ACA-AAAC-T-GACAATACCGAAAAGAACGCCGTATACATTGACGGAATAAAATAAATCTCCGCATAATCAAAGATAGA-AG-----TCA----C-T----G-C-TAAC--TGTAACAGGTGTATCTAACGCCATATATGGTGAATG----------------GAATTGCAATGTTAATTAAAAGTAGAAAGATCATCAAAAAGAGATTGAGTGATAGA-AG-A---A------------TTTTT-TT-CCCT---CCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGGtcatcttt
gi|7 : tCCGGAAATAACGCCGTATACGTTGACGGATTCGAAAAAATCTCCTCATA-T-----AC----AG-----TCAG-A----------CATAAC--C----CAGAT-CAATTAAT--CAAA----Ggagctacggcct
gi|17 : TA-T-----ATA-T-AG-----TCAG-A-CAT---------AAC--C----CAGGT-CAACTAAT--TAatcgaagtcactgctaattgtaataattatttggtgtatttaaagccatatatggtaaatggaattgcaattttacagtaaaaagatcatcaaaaagaaagttttgggttttttccctccgatatgcacgcacgtgcgtctaggtgtatagggagctacgcgcct
gi|7 : ------------------GAATTGCAATTTTAC-----AGTAAAAAGATCATCAAAAAGAAA---GTT--TTGG--GT-----------------TTTTT-C---------CCTC-CG-ATATGCACGCACGT-G-CGTCTA-GGTGTA-TAGGaatattgaagtcactgctaactgtaaccagtgtatctaacgccatgtggtgaatgggattgcaatgttacagtaga
gi|17 : ccggaaataacgccgtatacgttgacggattcgaaaaaatctcctcatatacagtcagacataacccagatcaattaatcaaagatcgaagtcactgctaattgtaataattatttggtgtatttaaagccatatatggtaaatg------------------GGATTGCAATGTTAC-----AGTAGAgagctacgcgcct
gi|14 : tatatatagtcagacataacccaggtcaactaattaaatattgaagtcactgctaactgtaaccagtgtatctaacgccatgtggtgaatgTTAC-----AGTAGAAAGATCATGAAAAAAGA--TGA-TGATAAGTAG-A---G------------TTTTTGGT-TTGTTCCCCTC-CG-ATGTGCACGCATGT-GACGTGTTGGGCGTA-TAGG
gi|12 : atggtgaatgagaaAGATCATCAAAAAGAGATTAATTGATAGA-AGTGTTGG------------TTTTG-TT-TTCT---TCTC-CG-ATGTGCACGCACGC-G-CGTGTT-GGTGTA-GAGaagctacgcgcct
gi|19 : atcaaagattgaagtcgctgcttactgtaactggtgtatctaccaccctaaatgatgaatggaattgcaaAGATCATCAAA--GAGATTGATTAATAGA-AG-A---G------------TTTTT-TT-T------TCTC-CA-ATGTGCACGC--------GTGTT-GGCGTA-TGGGcgagctacgcgcct
gi|21 : aaTCAAAAAGAGATTGATTGATTGATAGAA---GAATTTTTGGGTTTTTTT-CT-TTTT---TCTC-CG-ATGTGCACGCACGT-G-CGTGTgagctacgcacct
gi|22 : TTGATTGATCGT------------------------T-TA-T---CCTCGCGCATGTGGACGCACGT-G-CGTGTT--GCGTA--AGG
Alignments
lowQualScore : 1111 444444444444444444 111111111 11111 55555555555555555555555555555555555555555555555 111 111111 1111111 55555555555 11 111111 1 444444 333333333333333333333 111 1111 333333 1111 1111 11111 4444444444 333333333333333333333 111 11 333333333333333 22222 222 333333333333 1111 11111111 1111 11111 55555555555555555555555 111111
lowQualScore : 4 2222 4 4 444444444444444444 4 4 666666666 00000 4 4 4 33333333333333333333333333333333333333333333333 666 5 5 5 66 5 1 5 666 888888 888 5 1111111 888 11 00000000000 33 5 66 66 5 111111 5 5 5 2 6 6 222222 99 8 000000000000000000000 3 6 6 111 6 9999 777777 6 99 55 4444 6 6 4444 1 66666 1 8888888888 99 99 888888888888888888888 3 666 99 6 99 99 222222222222222 00000 8 8 8 8 99 0 1 3 6 222 666666666666 2222 5 999 33333333 2222 8 77 44444 5 0 0 00000000000000000000000 111111 1 4 4 4 4 5 55
lowQualScore : . .... . . .................. . . ......... ..... . . . ............................................... ... . . . .. . . . ... ...... ... . ....... ... .. ........... .. . .. .. . ...... . . . . . . ...... .. . ..................... . . . ... . .... ...... . .. .. .... . . .... . ..... . .......... .. .. ..................... . ... .. . .. .. ............... ..... . . . . .. . . . . ... ............ .... . ... ........ .... . .. ..... . . . ....................... ...... . . . . . . ..
lowQualScore : 4 5555 0 0 000000000000000000 0 0 000000000 00000 0 0 0 33333333333333333333333333333333333333333333333 000 7 7 7 99 0 4 0 222 999999 888 0 8888888 888 22 44444444444 88 0 99 99 7 111111 7 7 7 1 7 7 666666 22 0 444444444444444444444 2 7 7 777 7 2222 333333 7 22 33 8888 7 7 2222 0 77777 0 5555555555 22 22 777777777777777777777 3 888 22 7 22 22 555555555555555 00000 0 0 0 0 00 8 7 3 7 777 333333333333 1111 7 555 77777777 1111 6 99 33333 0 1 5 00000000000000000000000 999999 9 4 4 4 4 0 11
consensus : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCAGG----------------G-TCG-GGA-AC---------CGA-----CCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---A--GG---T--CT-GG-G------G-CCGCTCAAG-G-CC-C-CAGAAGCTCT-TGGGTAA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTAAAAA---C--TAC---TGC-TGTAATAAC----CA-TTT---TTNAAAAGAA------T---CTTTT--TTTTT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-GTAAAATTA-CT-TTACT---GGGTGTTACCAAAAGTCTTCAG-G-C-CCTAAGAG----AGA---GTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATA----AAGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACTGT-----CCAAAATCTGC-C-TC-----TC--CGTGTCTTGG--CAGAAACGAAC----AGCC---CGT----AGTAGCAAAGAAACTGT-C-ATTGTTTTCCATTTATGGT-TTT--CTGATTTCTCACGTTTC--GACGTCATG-TT----ATTTGACG-----C-GACAACA-CA-AAAC-T-GACAATACCGGAAATAACGCCGTATACGTTGACGGAA-TCGAATAAATCTCCGCATATACA-TAGTCAG-A---CA-TGCATAACC----CAGAT-CAACTAA--TCATG----G--TGA----ATGG--AATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTGATAGATAG----A-G-------------TTTTT--CT--TTCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
Reference ( family-388 ) : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCAGG----------------GGTCG-GGA-AC---------CGA-----CCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---A--GG---T--CT-GG-G------G-CCGCTCAAG-G-CC-C-CAGAAGCTCT-TGGGTAA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTAAAAA---C--TAC---TGC-TGTAATAAC----CA-TTT---TTNAAAAGAA------T---CTTTT--TTTTT-T--TGAGTTAT--CATACGAAGG-AC---A-NTG-AGATTGA-CGGAAAGC-GTAAAATTA-CT-TTACT---GGGTGTTACCAAAAGTCTTCAG-G-C-CCTAAGA-----AGA---GTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GAGCG-CG-ATTAATA---TAAGAAATAC-ACT--AATTTTGTAATTCTATTAAA---TACTA-CTTGGTTTCT-TA----GAACTNT-----CCAAAATCTGC-C-TC-----TC--CGTGTCTTGG--TAGAAACGAAC----AACC--ACGT----AGTANCAAAGAAACTGT-C-ATTGTTTTCCATTTATGGT-TTT--CTGATTTCTCACGTTTC--GA-GTCATG-TT----ATTTGACG-----C-GACAACA-CA-AAAC-T-NACAATACCGGAAATAACGCCGTNTACGTTGACGGAA-TCGAATAAATCTCCGCATATACA-TAGTCAG-A---CA-TGCATAACC----CAGAT-CAACTAA--TCATA----G--CGA----ACGG--AATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTGATAGATAG----A-G-------------TTTTT--CT--TTCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|1 : AGGGGCGTAGCTA-GCTG----T-AA-GTGATATGCACGCAGGATCGGGTCAGTCGCAGGGTCG-GGA-AC---------CGA-----CCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---A--GG---TTTCT-GGTG------G-TCGCTTAAA-G-TCAC-CAGAAGCTCT-GGGGTAA-AT-C-GTGCAAAATTC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTTAAAA---C--TAC---TGC-TGTAATAAT----CA-TTT---TTTAAAAGAA------TTATCTTTTCATTATT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGGTTGA-CGGAAAGC-GTAAAATTA-TT-TTACTCTTGGGTGCTACCAAAAGTCTTCAG-GAC-CCTAAGA-----AGA---GTATCTCAA-AGT-GCAA---ATGAAGTGTTT-GAATG-TA-ATTAATAATTTAAGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACTTT-----CCATATTATGT---TC-----TC--TATGTCTTGA--TGGAAACGAAC----AGCC---CGT----AGTATCAATGATACTGT-CGATTGTTCTCCATTTATGAT-TTT--CTAATTTCCCACGTT--------------------ATTTGACG-----C-GACAACC-CA-AAAC-T-GACAATACCGGATATAACACCGTATACGTGGACAGAA-TCGAATAAATCTCCGCATATACAGTAGTCAG-A---CA-TGCATAACC----CAAAT-CAACTAA--TCATA----G--CTA----A--G--AATTGCAATGTT-----ACAGTAGATAGATAATCAAAAAGGGA-TTGATTGATTGATAGT---A-G-------------TTTTT--CT--TAGTCCTC-CG-ATATGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|10 : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCAGG------------------TCG-GGA-AC---------CGAACCGACCCTGCC-CATCTCGAAGA-GGTGGCCT-TACGGC---A--GG----------G-G------G-CCGCTCAAG-G-CC-CTCAGAAGCTCT-TGGGTAA-AT-C-GTGTAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGCCCTAAAAA---CTATAC---ATC-TGTAATAAC----CA-TTT---TT
gi|11 : --TTTTT-T--TGAGTTGT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-G--AAATTA-CT-CTA-----AGGTGTTATCAAAATACTTTAGTG-C-CCTAAGA-----AGAAGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GTGCG-----------------GAAA--C-ACT--AATCTTGTAATTTTATTAAC---TACTA-CTTGGTTTCT-TA----AA
gi|12 : CTAA----ATG----A--TGA----ATGG--AATTGCAA------------------AGATCATCAAAAAGAGA-TTAATTGATAGA-AGTGTTG-G-------------TTTTG--TT--TTCTTCTC-CG-ATGTGCACGCACGC-G-CGTGTT-GGTGTA-GAGtagaa
gi|13 : atcaaagattgaagtcgctgcttactgtaactggtgtatctaccaccTGT-----CTAAAATCTGCTC-TCCCGACTC--CGTGTCTTGG--TAAAATCGAACTTTGCGCCGTACGT----AGATGCAAAGAAACT-----ATTGTTTTCCATTTA-GGTATTT--CTGATTTCTCACGTTTC--GACGTCATC-TT----cgagctacgcgcct
gi|14 : TT-----ACAGTAGAAAGATCATGAAAAA-AGA--TGA-TGATAAGTAG----A-G-------------TTTTTGGTTTGTTCCCCTC-CG-ATGTGCACGCATGT-GACGTGTTGGGCGTA-TAGGt
gi|15 : atggtgaatgagaaCC--TGCA-TTATCGC-CATTTCCT-G-GGACCTAGAAA---G--TAC---TGC-TGTAATCAT----GG-TTTACATGCAAAAAAA------------ATT--TTTTT-T--AAAGTTAT--CATACCAAGG-AC---A-TTG-AGATTGA-CAGAAAGT-GTAaagctacgcgcct
gi|16 : A----T-AA-ATGATATGCACGCAGG----------------G-TCG-GGA-AT---------CAA-----CCCTGCC-CACCTCGAAGA-GGTTGCTT-TACGACAAGA--GG---T--CT-GG-ATTAGATA-CCGCTCAAG-GCCC-C-CAGAAGCTCT-TGGGT
gi|17 : TATATA-TAGTCAG-A---CA-T----AACC----CAGGT-CAACTAA--TTA
gi|17 : TG----G--TGA----ATGG--GATTGCAATGTT-----ACAGTAGAaatattgaagtcactgctaactgtaaccagtgtatctaacgccatgtggtgaatgggattgcaatgttacagtaga
gi|18 : tatatatagtcagacataacccaggtcaactaattaaatattgaagtcactgctaactgtaaccagtgtatctaacgccatgAGGGGCGTAGCTA-GCTAATATT-AA-ATGATATGCACACAGG----------------G-TCG-GGA-AT---------CGA-----TCCTGCC-TGCCTCGAAGA-AGTGGCCT-TACGGC---A--GG---
gi|19 : AAAGATCATCAAA--GAGA-TTGATTAATAGA-AG----A-G-------------TTTTT--TT--TTCTCC----A-ATGTGCAC-------G-CGTGTT-GGCGTA-TGGGg
gi|2 : AGAGGCGTAGCTA-ACTA----T-AA-ATG-TATGCACGTAGC----------------GGTCG-GGACAC---------CGA-----TC-TGCCGCACCTC-AAGACAGTGGCCT--ACGGC---A--G----------------------------AAG-T-CC-----GAGGCGC----GTTAATAT-CCGCCCAAAATCCACT-CACTTCTCGCTCATTCCCT-G-GAACCTAAAAAAAAC--TAC---TGCCTGTAATCGA----CA-TTT---CGGAAAAAAA----------CTTCCACTTTTT-TAATGACATATTCCATGCGAAGGCACCAAA-TTG-AGAATGA-CGTAAAGCCGTTAAATTATCTATTACT--------TTACCAAAAG-CTTCAG-G-CTCCAAAGAGCAAGAGA---GTA-CTCAACAGTTACAATTAATGACAT-TTT-GAGCGATGCATTAATA-----AAAAATACCACTTCCATTTT-TAA----ATTAAAAAATACTAACTTAGTTTCCGTACCACGAACTGT-----TCAAAATCTGA-CATCACA--TCGACGTGTTATGAAACAGAAACC--C----AACC--ACACCTCAAGTAGCCAACTAATTGT-CTATTGTTTTCCATCT--GGT-TCC--CTTTATTCTCACGTTTCACGA-A-CATG-TCTTACACTTTACAACCGCC-GACAACATCACAAAC-T-TACAATACCGGAAATAACGCAGTTTACGTTGACGGAA-TCGAGCAAATATCCGCATATATA-T--TCAG-T---CA-AACATAACC----CAGAT-CAATTAA--Tgagctacgcacct
gi|20 : ccGGCGCGTAGCTATGCTAC---T-AA-ATGATATGCACGCAGA----------------G-TCG-GGA-AC---------CGA-----CCCTGCC-CATTTGGAAGA-GGTGACCT-TAC
gi|21 : acgTCAAAAAGAGA-TTGATTGATTGATAG----A-AGAATTTTTGGGTTTTTTT--CT--TTTTTCTC-CG-ATGTGCACGCACGT-G-CGTGTcgg
gi|22 : T--TTATCCTCGCGCATGTGGACGCACGT-G-CGTGTT--GCGTA--AGG
gi|3 : gttgattgatcgTT-T--TTAGTTAT--CATACGAAGG-AC---C-GCG-AGATTGA-CGGAAAGT-GTAA--TTA-CT-TTA-----GGGTGTTAT----AGT-TTGAG-G-C-CTCAGAAG----AGA---GTATTCTAA-AGT-ACAA---ATGATGTGTTTCGAGCG-TG-ATTAATA-----AGAAATAA-ACT--AATTTTGTAATTTTAAAAAA---TAGTA-CTTGGTTTCT-TA----GAACTGT-----C-AGAATCTGC---TC-----TC--CGTGTCTTGG--CAGAAACGAAC----AACC---CGT----AGTAGCAAAGAAACTGT-C---CATTTT--ATTTA-GGT-TTT--TTGATTTCTCACGTTTC--GAAGTCATG-TT-----TTTGACG-----CAGACAACA-CA-AAAAAT-TACAATACCGGGAATAACGCCGTTTACGTTGACAGAA-TTGAGTAAATCTCCGCATATAC---AGTCAG-A---C-------AACC----CAGAT-CAtgagctacgcgcct
gi|3 : ATG----G--TGA----ATGG--AATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTAATAGA-AG----ATT-------------TTTTT--CTC-TTTTCCTC-CG-ATGTGCACGCACGTGG-CGTGTT-GGCGTATTAGGttgaagtcattgctgctaaatgtaactggtgtatctaacgccatatatggtgaatggaattgcaatgttacagtagaaagatcatcaaaaagagattgattaatagaagatttttttctcttttcctccgatgtgcacgcacgtggcgtgttggcgtattagggagctacgcgcct
gi|4 : tttttagttatcatacgaaggaccgcgagattgacggaaagtgtaattactttagggtgttatagtttgaggcctcagaagagagtattctaaagtacaaatgatgtgtttcgagcgtgattaataagaaataaactaattttgtaattttaaaaaatagtacttggtttcttagaactgtcagaatctgctctccgtgtcttggcagaaacgaacaacccgtagtagcaaagaaactgtccattttatttaggttttttgatttctcacgtttcgaagtcatgtttttgacgcagacaacacaaaaaattacaataccgggaataacgccgtttacgttgacagaattgagtaaatctccgcatatacagtcagacaacccagatcattgaagtcattgctgctaaatgtaactggtgtatctaacgccatatAGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACACAGG----------------G-TCG-GGA-GC---------CGA-----CCCTGCC-CACCTCGAAGA-GATGGCCT-TACGGC---AGGGG---T--CTGGG-G------G-TCGCTCAAG-GAAC-C-TAGAAGCTCCGGGGGTAA-AT-C-GTGAAAAATCC--TGCA-TT-TTGC-TATTTCCT-G-GGACCTAAAAA---T--TAC---TGT-TGATATAGC----CA-TTT---TAAAAAAAAAGAAATTT---CTTTT--TTTTTAT--TGAGTTAT--TATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGT-GT--AATTA-CT-TTA-----GGGTGTTACCAAAAGTTTTCAG-G--------------------------------GT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATA----AAGAAATAC-ACT--AATTTTGTAATTCTATTAAA---TACTA-CTTGGTTTCT-TA----GAACTTT-----CCAAAATATGC-----------C--CG-----TAG--TAG-------------------------------CAAAGAAACTGTGT-ATTGTTTCCCATTAGTTTT-TTTCCCTGATTTCTCACGTTTC--GACGTCGTGTTT----ATTTGACA-----C-GACAACA-CA-AAAC-TGGAC-ATACCGG-AATAA-----------------AAATTCGAATAAATCT-----TATAC---AGTCAGCG---CA--ACATAAAC----CAGAT-CAACTAA--gagctacgcgcct
gi|5 : AGGGGCGTAGCTA-GCTG----TTAACATGATATGCACGCAGA----------------GGTCGAGGA-ACTCTACCCTTCGA-----CCC-GCC-AACCTCAAAGA-GTTGGCCTATACGTT---A-----------T-GG-G------------TCTTG-G-CC----------------GGTAA-ATTC-GTGCCAGATCT--TTTC-TTTTCGC-CATTTCCTTGTGGGCCTAAAAAA--C--TACAAGCGC-TTTAATAAC----TATTTT---TTAAAAAGAA--------------T--TTTTT-T--GGAGT--T--CATACGAAGG-AC---ATTTGCATATTGACCGGAAAGT-GT-TAATTA-CT-TT
gi|5 : TTTTAA-AGT-ACAA---ATGAAGTGTT--GAGCG-CG-ATTAAT----TAAGAAATAC-ACT--AATTT-GTAATTC-ATTAA----TACTA-CTTAGTT-CT-TA----GAAGTATTGCGTCCAAAATCTGC-C-TT-----CT--CGTGTCTTGG--CAGAAACGTAC----AGTC---CGT----AGTAGAAAAGAAACTGT-C-ATTGTTTTCCAtaaagtacaaatgaagtgttgagcgcgattaattaagaaatacactaatttgtaattcattaatactacttagttcttagaagtattgcgtccaaaatctgccttctcgtgtcttggcagaaacgtacagtccgtagtagaaaagaaactgtcattgttttcca
gi|6 : aggggcgtagctagctgttaacatgatatgcacgcagaggtcgaggaactctacccttcgacccgccaacctcaaagagttggcctatacgttatgggtcttggccggtaaattcgtgccagatcttttcttttcgccatttccttgtgggcctaaaaaactacaagcgctttaataactattttttaaaaagaatttttttggagttcatacgaaggacatttgcatattgaccggaaagtgttaattacT-TTT--CTGATTTCTCACGTTTC--GACGTCATG-TTT---ATTTGATG-----C-GACAACA-CA-AAAC-T-GACAATACCGAAAAGAACGCCGTATACATTGACGGAA-TAAAATAAATCTCCGCATAATCA-AAGATAG-AAGTCACTGC-TAACTGTAACAGGTGTATCTAACGCCATATATGG--TGA----ATGG--AATTGCAATGTTAATTAAAAGTAGAAAGATCATCAAAAAGAGA-TTGAGTGATAGA-AG----A-A-------------TTTTT--TT--CCCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|7 : tCCGGAAATAACGCCGTATACGTTGACGGAT-TCGAAAAAATCTCCTCATATAC---AGTCAG-A--------CATAACC----CAGAT-CAATTAA--TCAAA----GATCGAAGTCACTGCTAATTGTAATgagctacggcct
gi|7 : ATG----G--TAA----ATGG--AATTGCAATTTT-----ACAGTAAAAAGATCATCAAAAAGAAAGTT--TTG---GGT----------------------TTTTT--C-------CCTC-CG-ATATGCACGCACGT-G-CGTCTA-GGTGTA-TAGGaattatttggtgtatttaaagccatatatggtaaatggaattgcaattttacagtaaaaagatcatcaaaaagaaagttttgggttttttccctccgatatgcacgcacgtgcgtctaggtgtatagggagctacgcgcct
gi|8 : ccggaaataacgccgtatacgttgacggattcgaaaaaatctcctcatatacagtcagacataacccagatcaattaatcaaagatcgaagtcactgctaattgtaataattatttggtgtatttaaagccatatAGGGGCGTACCTA-GCTA----T-AA-ATAATATGCACGCAGG----------------G-TCG-GAA-AC---------CGA-----ACCTGCC-CACCTCGAAGA-GGTGACCT-TACAAC---A--GGGGGT--AT-GG-G------ATCCGCGCAATTA-CC-C-CAGAAGCTCT-TGGGTAA-AT-C-ATGCAAAATCC--TGCA-TTCTTGC-CATTTCCT-G-GGACCTAAA-------------------GTAACAAT----T--TCT---TTAAAAAAAAGT----T---CTTTT--Tgagctacgcgcct
gi|9 : AGGGGCGTAGCTA-GCAA------AA-ATGATATGCACGCAGG----------------G-TCG-GGA-AC---------CGA-----TCCTGTC-CAACTCGAAGA-GGTGATCT-TACGGC---T--GG----------G-G------G-CCGCT----------------------------AA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTACT---GGACCTAAAAA---C--TAC---TGC-TGTAATAACCATGCA-TTT---TTTAAAAGA------------TTTT--TTTTT-T--TGAGTTAT--CATACG
Alignments
lowQualScore : 1111 22222222222222222 111111111 11111 555555555555555555555555555555555555555555555 111 111111 1111111 55555555555 11 111111 1 444444 33333333333333333 111 1111 11111 1111 1111 11111 44444444444 11111111111111 111 111 11 22222 22222 222 333333333333 1111 22222222 11111 55555555555555555555555 111111
lowQualScore : 4 2222 4 4 88888888888888888 8 4 4 666666666 00000 4 4 4 333333333333333333333333333333333333333333333 666 5 5 5 66 5 1 5 666 888888 888 5 1111111 888 11 00000000000 33 5 66 66 5 000000 5 5 5 2 6 6 222222 99 8 88888888888888888 3 6 6 111 6 1111 77777 6 99 3 4444 6 6 4444 66666 1 55555555555 99 99 66666666666666 6 111 666 99 6 99 2 6 6 11111 00000 8 8 8 8 8 0 1 3 6 222 666666666666 2222 5 11111111 8888 5 22 44444 5 0 0 00000000000000000000000 111111 1 4 4 4 4 5 55
lowQualScore : . .... . . ................. . . . ......... ..... . . . ............................................. ... . . . .. . . . ... ...... ... . ....... ... .. ........... .. . .. .. . ...... . . . . . . ...... .. . ................. . . . ... . .... ..... . .. . .... . . .... ..... . ........... .. .. .............. . ... ... .. . .. . . . ..... ..... . . . . . . . . . ... ............ .... . ........ .... . .. ..... . . . ....................... ...... . . . . . . ..
lowQualScore : 4 5555 0 0 00000000000000000 0 0 0 000000000 00000 0 0 0 333333333333333333333333333333333333333333333 000 7 7 7 99 0 4 0 222 999999 888 0 8888888 888 22 44444444444 88 0 99 99 7 999999 7 7 7 1 7 7 666666 22 0 00000000000000000 2 7 7 777 7 8888 33333 7 22 2 8888 7 7 2222 77777 0 33333333333 22 22 77777777777777 7 777 888 22 7 22 5 7 7 66666 00000 0 0 0 0 0 8 7 7 7 777 333333333333 1111 7 66666666 5555 0 11 33333 0 1 5 00000000000000000000000 999999 9 4 4 4 4 0 11
consensus : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AC---------CGA-----CCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---A---GGT--CT-GG-G------G-CCGCTCAA-GG-CC-C-CAGAAGCTCT-TGGGTAA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTAAAAA---C--TAC---TGC-TGTAATAAC----CA-TTT---TTNAAAAGAA------T---CTTTT--TTTTT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-GTAAAATTA-CT-TTACT---GGGTGTTACCAAAAGTCTTCAG-G-C-CCTAAGA--G----AGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATAA----AGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----GTCCAAAATCTGC-C-TC-----TC--CGTGTCTTGG--CAGAAAC--GA--ACA--GC-CCGTA-GTAG---CAAAGAAACTGT-C-ATTGTTTTCCATTTATGGT-TTT--CTGATTTCTCACGTTTCGACGT-CATG-TT----ATTTGACG-----C-GACAACA-C-A-AAACT-GACAATACCGGAAATAACGCCGTATACGTTGACGGAA-TCGAATAAATCTCCGCATATACA-TAGTCAG-A---CA-TGCATAACC----CAGAT-CAACTAA-T------CA----TGGTGAATG-GAATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTGATAGATAG----A-G-------------TTTTT--CT--TTCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
Reference ( family-388 ) : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AC---------CGA-----CCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---A---GGT--CT-GG-G------G-CCGCTCAA-GG-CC-C-CAGAAGCTCT-TGGGTAA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTAAAAA---C--TAC---TGC-TGTAATAAC----CA-TTT---TTNAAAAGAA------T---CTTTT--TTTTT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-GTAAAATTA-CT-TTACT---GGGTGTTACCAAAAGTCTTCAG-G-C-CCTAAGA--G----AGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATAA----AGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----GTCCAAAATCTGC-C-TC-----TC--CGTGTCTTGG--CAGAAAC--GA--ACA--GC-CCGTA-GTAG---CAAAGAAACTGT-C-ATTGTTTTCCATTTATGGT-TTT--CTGATTTCTCACGTTTCGACGT-CATG-TT----ATTTGACG-----C-GACAACA-C-A-AAACT-GACAATACCGGAAATAACGCCGTATACGTTGACGGAA-TCGAATAAATCTCCGCATATACA-TAGTCAG-A---CA-TGCATAACC----CAGAT-CAACTAA-T------CA----TGGTGAATG-GAATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTGATAGATAG----A-G-------------TTTTT--CT--TTCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|1 : AGGGGCGTAGCTA-GCTG----T-AA-GTGATATGCACGCAGGATCGGGTCAGTCGCAG-GGTCG-GGA-AC---------CGA-----CCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---A---GGTTTCT-GGTG------G-TCGCTTAA-AG-TCAC-CAGAAGCTCT-GGGGTAA-AT-C-GTGCAAAATTC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTTAAAA---C--TAC---TGC-TGTAATAAT----CA-TTT---TTTAAAAGAA------TTATCTTTTCATTATT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGGTTGA-CGGAAAGC-GTAAAATTA-TT-TTACTCTTGGGTGCTACCAAAAGTCTTCAG-GAC-CCTAAGA-------AGAGTATCTCAA-AGT-GCAA---ATGAAGTGTTT-GAATG-TA-ATTAATAATTTAAGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----TTCCATATTATGT---TC-----TC--TATGTCTTGA--TGGAAAC--GA--ACA--GC-CCGTA-GTAT---CAATGATACTGT-CGATTGTTCTCCATTTATGAT-TTT--CTAATTTCCCACGTT-------------------ATTTGACG-----C-GACAACC-C-A-AAACT-GACAATACCGGATATAACACCGTATACGTGGACAGAA-TCGAATAAATCTCCGCATATACAGTAGTCAG-A---CA-TGCATAACC----CAAAT-CAACTAA-T------CA----TAGCTAA---GAATTGCAATGTT-----ACAGTAGATAGATAATCAAAAAGGGA-TTGATTGATTGATAGT---A-G-------------TTTTT--CT--TAGTCCTC-CG-ATATGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|10 : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCA-----------------G-G-TCG-GGA-AC---------CGAACCGACCCTGCC-CATCTCGAAGA-GGTGGCCT-TACGGC---A---GG-------G-G------G-CCGCTCAA-GG-CC-CTCAGAAGCTCT-TGGGTAA-AT-C-GTGTAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGCCCTAAAAA---CTATAC---ATC-TGTAATAAC----CA-TTT---TT
gi|11 : --TTTTT-T--TGAGTTGT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-G--AAATTA-CT-CTA-----AGGTGTTATCAAAATACTTTAGTG-C-CCTAAGAAGA----AGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GTGCG-----------------GAA--AC-ACT--AATCTTGTAATTTTATTAAC---TACTA-CTTGGTTTCT-TA----AA
gi|12 : CTAA---------A----TGATGAATG-GAATTGCAA------------------AGATCATCAAAAAGAGA-TTAATTGATAGA-AGTGTTG-G-------------TTTTG--TT--TTCTTCTC-CG-ATGTGCACGCACGC-G-CGTGTT-GGTGTA-GAGtagaa
gi|13 : atcaaagattgaagtcgctgcttactgtaactggtgtatctaccaccT-----GTCTAAAATCTGCTC-TCCCGACTC--CGTGTCTTGG--TAAAATC--GA--ACTTTGCGCCGTACGTAGATGCAAAGAAACT-----ATTGTTTTCCATTTA-GGTATTT--CTGATTTCTCACGTTTCGACGT-CATC-TT----cgagctacgcgcct
gi|14 : A----TGGTGAATGAGAATT-------------ACAGTAGAAAGATCATGAAAAA-AGA--TGA-TGATAAGTAG----A-G-------------TTTTTGGTTTGTTCCCCTC-CG-ATGTGCACGCATGT-GACGTGTTGGGCGTA-TAGGt
gi|15 : CC--TGCA-TTATCGC-CATTTCCT-G-GGACCTAGAAA---G--TAC---TGC-TGTAATCAT----GG-TTTACATGCAAAAAAA------------ATT--TTTTT-T--AAAGTTAT--CATACCAAGG-AC---A-TTG-AGATTGA-CAGAAAGT-GTAaagctacgcgcct
gi|16 : A----T-AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AT---------CAA-----CCCTGCC-CACCTCGAAGA-GGTTGCTT-TACGACAAGA---GGT--CT-GG-ATTAGATA-CCGCTCAA-GGCCC-C-CAGAAGCTCT-TGGGT
gi|17 : TATATA-TAGTCAG-A---CA-T----AACC----CAGGT-CAACTAA-T------TA----
gi|17 : ----TGGTGAATG-GGATTGCAATGTT-----ACAGTAGAaatattgaagtcactgctaactgtaaccagtgtatctaacgccatgtggtgaatgggattgcaatgttacagtaga
gi|18 : tatatatagtcagacataacccaggtcaactaattaaatattgaagtcactgctaactgtaaccagtgtatctaacgccatgAGGGGCGTAGCTA-GCTAATATT-AA-ATGATATGCACACA-----------------G-GGTCG-GGA-AT---------CGA-----TCCTGCC-TGCCTCGAAGA-AGTGGCCT-TACGGC---A---GG
gi|19 : AAAGATCATCAAA--GAGA-TTGATTAATAGA-AG----A-G-------------TTTTT--TT--TTCTCC----A-ATGTGCAC-------G-CGTGTT-GGCGTA-TGGGg
gi|2 : AGAGGCGTAGCTA-ACTA----T-AA-ATG-TATGCACGTA-----------------GCGGTCG-GGACAC---------CGA-----TC-TGCCGCACCTC-AAGACAGTGGCCT--ACGGC---A---G-------------------------AA-GT-CC-----GAGGCGC----GTTAATAT-CCGCCCAAAATCCACT-CACTTCTCGCTCATTCCCT-G-GAACCTAAAAAAAAC--TAC---TGCCTGTAATCGA----CA-TTT---CGGAAAAAAA----------CTTCCACTTTTT-TAATGACATATTCCATGCGAAGGCACCAAA-TTG-AGAATGA-CGTAAAGCCGTTAAATTATCTATTACT--------TTACCAAAAG-CTTCAG-G-CTCCAAAGA--GCAAGAGAGTA-CTCAACAGTTACAATTAATGACAT-TTT-GAGCGATGCATTAATAA----A-AAATACCACTTCCATTTT-TAA----ATTAAAAAATACTAACTTAGTTTCCGTACCACGAACT-----GTTCAAAATCTGA-CATCACA--TCGACGTGTTATGAAACAGAAACCCAACCACA--CC-TCA-A-GTAG---CCAACTAATTGT-CTATTGTTTTCCATCT--GGT-TCC--CTTTATTCTCACGTTTC-ACGAACATG-TCTTACACTTTACAACCGCC-GACAACATC-ACAAACT-TACAATACCGGAAATAACGCAGTTTACGTTGACGGAA-TCGAGCAAATATCCGCATATATA-T--TCAG-T---CA-AACATAACC----CAGAT-CAATTAA-T------gagctacgcacct
gi|20 : ccGGCGCGTAGCTATGCTAC---T-AA-ATGATATGCACGCA-----------------G-AGTCG-GGA-AC---------CGA-----CCCTGCC-CATTTGGAAGA-GGTGACCT-TAC
gi|21 : acgTCAAAAAGAGA-TTGATTGATTGATAG----A-AGAATTTTTGGGTTTTTTT--CT--TTTTTCTC-CG-ATGTGCACGCACGT-G-CGTGTcgg
gi|22 : T--TTATCCTCGCGCATGTGGACGCACGT-G-CGTGTT--GCGTA--AGG
gi|3 : gttgattgatcgTT-T--TTAGTTAT--CATACGAAGG-AC---C-GCG-AGATTGA-CGGAAAGT-GTAA--TTA-CT-TTA-----GGGTGTTAT----AGT-TTGAG-G-C-CTCAGAA--G----AGAGTATTCTAA-AGT-ACAA---ATGATGTGTTTCGAGCG-TG-ATTAATAA-----GAAATAA-ACT--AATTTTGTAATTTTAAAAAA---TAGTA-CTTGGTTTCT-TA----GAACT-----GT-CAGAATCTG--C-TC-----TC--CGTGTCTTGG--CAGAAAC--GA--ACA--AC-CCGTA-GTAG---CAAAGAAACTGT-C---CATTTT--ATTTA-GGT-TTT--TTGATTTCTCACGTTTCGAAGT-CATG-TT-----TTTGACG-----CAGACAACA-CAA-AAAAT-TACAATACCGGGAATAACGCCGTTTACGTTGACAGAA-TTGAGTAAATCTCCGCATATAC---AGTCAG-A---C-------AACC----CAGAT-CATTGAAGT------CATTGCTGCTAAATG-TAACTGtgagctacgcgcct
gi|3 : A----TGGTGAATG-GAATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTAATAGA-AG----ATT-------------TTTTT--CTC-TTTTCCTC-CG-ATGTGCACGCACGTGG-CGTGTT-GGCGTATTAGGgtgtatctaacgccatatatggtgaatggaattgcaatgttacagtagaaagatcatcaaaaagagattgattaatagaagatttttttctcttttcctccgatgtgcacgcacgtggcgtgttggcgtattagggagctacgcgcct
gi|4 : tttttagttatcatacgaaggaccgcgagattgacggaaagtgtaattactttagggtgttatagtttgaggcctcagaagagagtattctaaagtacaaatgatgtgtttcgagcgtgattaataagaaataaactaattttgtaattttaaaaaatagtacttggtttcttagaactgtcagaatctgctctccgtgtcttggcagaaacgaacaacccgtagtagcaaagaaactgtccattttatttaggttttttgatttctcacgtttcgaagtcatgtttttgacgcagacaacacaaaaaattacaataccgggaataacgccgtttacgttgacagaattgagtaaatctccgcatatacagtcagacaacccagatcattgaagtcattgctgctaaatgtaactggtgtatctaacgccatatAGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACACA-----------------G-GGTCG-GGA-GC---------CGA-----CCCTGCC-CACCTCGAAGA-GATGGCCT-TACGGC---AGG-GGT--CTGGG-G------G-TCGCTCAA-GGAAC-C-TAGAAGCTCCGGGGGTAA-AT-C-GTGAAAAATCC--TGCA-TT-TTGC-TATTTCCT-G-GGACCTAAAAA---T--TAC---TGT-TGATATAGC----CA-TTT---TAAAAAAAAAGAAATTT---CTTTT--TTTTTAT--TGAGTTAT--TATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGT-GT--AATTA-CT-TTA-----GGGTGTTACCAAAAGTTTTCAG-G-------------------------------GT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATAA----AGAAATAC-ACT--AATTTTGTAATTCTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----TTCCAAAATATGC-----------C--CGTA-------------------------------GTA-G------CAAAGAAACTGTGT-ATTGTTTCCCATTAGTTTT-TTTCCCTGATTTCTCACGTTTCGACGT-CGTGTTT----ATTTGACA-----C-GACAACA-C-A-AAACTGGAC-ATACCGG-AATAA-----------------AAATTCGAATAAATCT-----TATAC---AGTCAGCG---CA--ACATAAAC----CAGAT-CAACTAA-gagctacgcgcct
gi|5 : AGGGGCGTAGCTA-GCTG----TTAACATGATATGCACGCA-----------------GAGGTCGAGGA-ACTCTACCCTTCGA-----CCC-GCC-AACCTCAAAGA-GTTGGCCTATACGTT---A---------T-GG-G------------TCTT-GG-CC----------------GGTAA-ATTC-GTGCCAGATCT--TTTC-TTTTCGC-CATTTCCTTGTGGGCCTAAAAAA--C--TACAAGCGC-TTTAATAAC----TATTTT---TTAAAAAGAA--------------T--TTTTT-T--GGAGT--T--CATACGAAGG-AC---ATTTGCATATTGACCGGAAAGT-GT-TAATTA-CT-TT
gi|5 : TTTTAA-AGT-ACAA---ATGAAGTGTT--GAGCG-CG-ATTAATTA----AGAAATAC-ACT--AATTT-GTAATTC-ATTAA----TACTA-CTTAGTT-CT-TA----GAAGTATTGCGTCCAAAATCTGC-C-TT-----CT--CGTGTCTTGG--CAGAAAC--GT--ACA--GT-CCGTA-GTAG---AAAAGAAACTGT-C-ATTGTTTTCCAtaaagtacaaatgaagtgttgagcgcgattaattaagaaatacactaatttgtaattcattaatactacttagttcttagaagtattgcgtccaaaatctgccttctcgtgtcttggcagaaacgtacagtccgtagtagaaaagaaactgtcattgttttcca
gi|6 : aggggcgtagctagctgttaacatgatatgcacgcagaggtcgaggaactctacccttcgacccgccaacctcaaagagttggcctatacgttatgggtcttggccggtaaattcgtgccagatcttttcttttcgccatttccttgtgggcctaaaaaactacaagcgctttaataactattttttaaaaagaatttttttggagttcatacgaaggacatttgcatattgaccggaaagtgttaattacT-TTT--CTGATTTCTCACGTTTCGACGT-CATG-TTT---ATTTGATG-----C-GACAACA-C-A-AAACT-GACAATACCGAAAAGAACGCCGTATACATTGACGGAA-TAAAATAAATCTCCGCATAATCA-AAGATAG-AAGTCACTGC-TAACTGTAACAGGTGTATCTAA-CGCCATATA----TGGTGAATG-GAATTGCAATGTTAATTAAAAGTAGAAAGATCATCAAAAAGAGA-TTGAGTGATAGA-AG----A-A-------------TTTTT--TT--CCCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|7 : tCCGGAAATAACGCCGTATACGTTGACGGAT-TCGAAAAAATCTCCTCATATAC---AGTCAG-A--------CATAACC----CAGAT-CAATTAA-T------CA----gagctacggcct
gi|7 : A----TGGTAAATG-GAATTGCAATTTT-----ACAGTAAAAAGATCATCAAAAAGAAAGTT--TTG---GGT----------------------TTTTT--C-------CCTC-CG-ATATGCACGCACGT-G-CGTCTA-GGTGTA-TAGGaagatcgaagtcactgctaattgtaataattatttggtgtatttaaagccatatatggtaaatggaattgcaattttacagtaaaaagatcatcaaaaagaaagttttgggttttttccctccgatatgcacgcacgtgcgtctaggtgtatagggagctacgcgcct
gi|8 : ccggaaataacgccgtatacgttgacggattcgaaaaaatctcctcatatacagtcagacataacccagatcaattaatcaaagatcgaagtcactgctaattgtaataattatttggtgtatttaaagccatatAGGGGCGTACCTA-GCTA----T-AA-ATAATATGCACGCA-----------------G-GGTCG-GAA-AC---------CGA-----ACCTGCC-CACCTCGAAGA-GGTGACCT-TACAAC---AGGGGGT--AT-GG-G------ATCCGCGCAATTA-CC-C-CAGAAGCTCT-TGGGTAA-AT-C-ATGCAAAATCC--TGCA-TTCTTGC-CATTTCCT-G-GGACCTAAA-------------------GTAACAAT----T--TCT---TTAAAAAAAAGT----T---CTTTT--Tgagctacgcgcct
gi|9 : AGGGGCGTAGCTA-GCAA------AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AC---------CGA-----TCCTGTC-CAACTCGAAGA-GGTGATCT-TACGGC---T---GG-------G-G------G-CCGCT----------------------------AA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTACT---GGACCTAAAAA---C--TAC---TGC-TGTAATAACCATGCA-TTT---TTTAAAAGA------------TTTT--TTTTT-T--TGAGTTAT--CATACG
Alignments
lowQualScore : 1111 22222222222222222 111111111 11111 555555555555555555555555555555555555555555555 111 111111 1111111 55555555555 11 111111 1 444444 33333333333333333 111 1111 11111 1111 1111 11111 44444444444 11111111111111 111 111 11 22222 22222 222 333333333333 1111 22222222 11111 55555555555555555555555 111111
lowQualScore : 4 2222 4 4 88888888888888888 8 4 4 666666666 00000 4 4 4 333333333333333333333333333333333333333333333 666 5 5 5 66 5 1 5 666 888888 888 5 1111111 888 11 00000000000 33 5 66 66 5 000000 5 5 5 2 6 6 222222 99 8 88888888888888888 3 6 6 111 6 1111 77777 6 99 3 4444 6 6 4444 66666 1 55555555555 99 99 66666666666666 6 111 666 99 6 99 2 6 6 11111 00000 8 8 8 8 8 0 1 3 6 222 666666666666 2222 5 11111111 8888 5 22 44444 5 0 0 00000000000000000000000 111111 1 4 4 4 4 5 55
lowQualScore : . .... . . ................. . . . ......... ..... . . . ............................................. ... . . . .. . . . ... ...... ... . ....... ... .. ........... .. . .. .. . ...... . . . . . . ...... .. . ................. . . . ... . .... ..... . .. . .... . . .... ..... . ........... .. .. .............. . ... ... .. . .. . . . ..... ..... . . . . . . . . . ... ............ .... . ........ .... . .. ..... . . . ....................... ...... . . . . . . ..
lowQualScore : 4 5555 0 0 00000000000000000 0 0 0 000000000 00000 0 0 0 333333333333333333333333333333333333333333333 000 7 7 7 99 0 4 0 222 999999 888 0 8888888 888 22 44444444444 88 0 99 99 7 999999 7 7 7 1 7 7 666666 22 0 00000000000000000 2 7 7 777 7 8888 33333 7 22 2 8888 7 7 2222 77777 0 33333333333 22 22 77777777777777 7 777 888 22 7 22 5 7 7 66666 00000 0 0 0 0 0 8 7 7 7 777 333333333333 1111 7 66666666 5555 0 11 33333 0 1 5 00000000000000000000000 999999 9 4 4 4 4 0 11
consensus : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AC---------CGA-----CCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---A---GGT--CT-GG-G------G-CCGCTCAA-GG-CC-C-CAGAAGCTCT-TGGGTAA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTAAAAA---C--TAC---TGC-TGTAATAAC----CA-TTT---TTNAAAAGAA------T---CTTTT--TTTTT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-GTAAAATTA-CT-TTACT---GGGTGTTACCAAAAGTCTTCAG-G-C-CCTAAGA--G----AGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATAA----AGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----GTCCAAAATCTGC-C-TC-----TC--CGTGTCTTGG--CAGAAAC--GA--ACA--GC-CCGTA-GTAG---CAAAGAAACTGT-C-ATTGTTTTCCATTTATGGT-TTT--CTGATTTCTCACGTTTCGACGT-CATG-TT----ATTTGACG-----C-GACAACA-C-A-AAACT-GACAATACCGGAAATAACGCCGTATACGTTGACGGAA-TCGAATAAATCTCCGCATATACA-TAGTCAG-A---CA-TGCATAACC----CAGAT-CAACTAA-T------CA----TGGTGAATG-GAATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTGATAGATAG----A-G-------------TTTTT--CT--TTCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
Reference ( family-388 ) : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AC---------CGA-----CCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---A---GGT--CT-GG-G------G-CCGCTCAA-GG-CC-C-CAGAAGCTCT-TGGGTAA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTAAAAA---C--TAC---TGC-TGTAATAAC----CA-TTT---TTNAAAAGAA------T---CTTTT--TTTTT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-GTAAAATTA-CT-TTACT---GGGTGTTACCAAAAGTCTTCAG-G-C-CCTAAGA--G----AGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATAA----AGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----GTCCAAAATCTGC-C-TC-----TC--CGTGTCTTGG--CAGAAAC--GA--ACA--GC-CCGTA-GTAG---CAAAGAAACTGT-C-ATTGTTTTCCATTTATGGT-TTT--CTGATTTCTCACGTTTCGACGT-CATG-TT----ATTTGACG-----C-GACAACA-C-A-AAACT-GACAATACCGGAAATAACGCCGTATACGTTGACGGAA-TCGAATAAATCTCCGCATATACA-TAGTCAG-A---CA-TGCATAACC----CAGAT-CAACTAA-T------CA----TGGTGAATG-GAATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTGATAGATAG----A-G-------------TTTTT--CT--TTCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|1 : AGGGGCGTAGCTA-GCTG----T-AA-GTGATATGCACGCAGGATCGGGTCAGTCGCAG-GGTCG-GGA-AC---------CGA-----CCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---A---GGTTTCT-GGTG------G-TCGCTTAA-AG-TCAC-CAGAAGCTCT-GGGGTAA-AT-C-GTGCAAAATTC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTTAAAA---C--TAC---TGC-TGTAATAAT----CA-TTT---TTTAAAAGAA------TTATCTTTTCATTATT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGGTTGA-CGGAAAGC-GTAAAATTA-TT-TTACTCTTGGGTGCTACCAAAAGTCTTCAG-GAC-CCTAAGA-------AGAGTATCTCAA-AGT-GCAA---ATGAAGTGTTT-GAATG-TA-ATTAATAATTTAAGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----TTCCATATTATGT---TC-----TC--TATGTCTTGA--TGGAAAC--GA--ACA--GC-CCGTA-GTAT---CAATGATACTGT-CGATTGTTCTCCATTTATGAT-TTT--CTAATTTCCCACGTT-------------------ATTTGACG-----C-GACAACC-C-A-AAACT-GACAATACCGGATATAACACCGTATACGTGGACAGAA-TCGAATAAATCTCCGCATATACAGTAGTCAG-A---CA-TGCATAACC----CAAAT-CAACTAA-T------CA----TAGCTAA---GAATTGCAATGTT-----ACAGTAGATAGATAATCAAAAAGGGA-TTGATTGATTGATAGT---A-G-------------TTTTT--CT--TAGTCCTC-CG-ATATGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|10 : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCA-----------------G-G-TCG-GGA-AC---------CGAACCGACCCTGCC-CATCTCGAAGA-GGTGGCCT-TACGGC---A---GG-------G-G------G-CCGCTCAA-GG-CC-CTCAGAAGCTCT-TGGGTAA-AT-C-GTGTAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGCCCTAAAAA---CTATAC---ATC-TGTAATAAC----CA-TTT---TT
gi|11 : --TTTTT-T--TGAGTTGT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-G--AAATTA-CT-CTA-----AGGTGTTATCAAAATACTTTAGTG-C-CCTAAGAAGA----AGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GTGCG-----------------GAA--AC-ACT--AATCTTGTAATTTTATTAAC---TACTA-CTTGGTTTCT-TA----AA
gi|12 : CTAA---------A----TGATGAATG-GAATTGCAA------------------AGATCATCAAAAAGAGA-TTAATTGATAGA-AGTGTTG-G-------------TTTTG--TT--TTCTTCTC-CG-ATGTGCACGCACGC-G-CGTGTT-GGTGTA-GAGtagaa
gi|13 : atcaaagattgaagtcgctgcttactgtaactggtgtatctaccaccT-----GTCTAAAATCTGCTC-TCCCGACTC--CGTGTCTTGG--TAAAATC--GA--ACTTTGCGCCGTACGTAGATGCAAAGAAACT-----ATTGTTTTCCATTTA-GGTATTT--CTGATTTCTCACGTTTCGACGT-CATC-TT----cgagctacgcgcct
gi|14 : A----TGGTGAATGAGAATT-------------ACAGTAGAAAGATCATGAAAAA-AGA--TGA-TGATAAGTAG----A-G-------------TTTTTGGTTTGTTCCCCTC-CG-ATGTGCACGCATGT-GACGTGTTGGGCGTA-TAGGt
gi|15 : CC--TGCA-TTATCGC-CATTTCCT-G-GGACCTAGAAA---G--TAC---TGC-TGTAATCAT----GG-TTTACATGCAAAAAAA------------ATT--TTTTT-T--AAAGTTAT--CATACCAAGG-AC---A-TTG-AGATTGA-CAGAAAGT-GTAaagctacgcgcct
gi|16 : A----T-AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AT---------CAA-----CCCTGCC-CACCTCGAAGA-GGTTGCTT-TACGACAAGA---GGT--CT-GG-ATTAGATA-CCGCTCAA-GGCCC-C-CAGAAGCTCT-TGGGT
gi|17 : TATATA-TAGTCAG-A---CA-T----AACC----CAGGT-CAACTAA-T------TA----
gi|17 : ----TGGTGAATG-GGATTGCAATGTT-----ACAGTAGAaatattgaagtcactgctaactgtaaccagtgtatctaacgccatgtggtgaatgggattgcaatgttacagtaga
gi|18 : tatatatagtcagacataacccaggtcaactaattaaatattgaagtcactgctaactgtaaccagtgtatctaacgccatgAGGGGCGTAGCTA-GCTAATATT-AA-ATGATATGCACACA-----------------G-GGTCG-GGA-AT---------CGA-----TCCTGCC-TGCCTCGAAGA-AGTGGCCT-TACGGC---A---GG
gi|19 : AAAGATCATCAAA--GAGA-TTGATTAATAGA-AG----A-G-------------TTTTT--TT--TTCTCC----A-ATGTGCAC-------G-CGTGTT-GGCGTA-TGGGg
gi|2 : AGAGGCGTAGCTA-ACTA----T-AA-ATG-TATGCACGTA-----------------GCGGTCG-GGACAC---------CGA-----TC-TGCCGCACCTC-AAGACAGTGGCCT--ACGGC---A---G-------------------------AA-GT-CC-----GAGGCGC----GTTAATAT-CCGCCCAAAATCCACT-CACTTCTCGCTCATTCCCT-G-GAACCTAAAAAAAAC--TAC---TGCCTGTAATCGA----CA-TTT---CGGAAAAAAA----------CTTCCACTTTTT-TAATGACATATTCCATGCGAAGGCACCAAA-TTG-AGAATGA-CGTAAAGCCGTTAAATTATCTATTACT--------TTACCAAAAG-CTTCAG-G-CTCCAAAGA--GCAAGAGAGTA-CTCAACAGTTACAATTAATGACAT-TTT-GAGCGATGCATTAATAA----A-AAATACCACTTCCATTTT-TAA----ATTAAAAAATACTAACTTAGTTTCCGTACCACGAACT-----GTTCAAAATCTGA-CATCACA--TCGACGTGTTATGAAACAGAAACCCAACCACA--CC-TCA-A-GTAG---CCAACTAATTGT-CTATTGTTTTCCATCT--GGT-TCC--CTTTATTCTCACGTTTC-ACGAACATG-TCTTACACTTTACAACCGCC-GACAACATC-ACAAACT-TACAATACCGGAAATAACGCAGTTTACGTTGACGGAA-TCGAGCAAATATCCGCATATATA-T--TCAG-T---CA-AACATAACC----CAGAT-CAATTAA-T------gagctacgcacct
gi|20 : ccGGCGCGTAGCTATGCTAC---T-AA-ATGATATGCACGCA-----------------G-AGTCG-GGA-AC---------CGA-----CCCTGCC-CATTTGGAAGA-GGTGACCT-TAC
gi|21 : acgTCAAAAAGAGA-TTGATTGATTGATAG----A-AGAATTTTTGGGTTTTTTT--CT--TTTTTCTC-CG-ATGTGCACGCACGT-G-CGTGTcgg
gi|22 : T--TTATCCTCGCGCATGTGGACGCACGT-G-CGTGTT--GCGTA--AGG
gi|3 : gttgattgatcgTT-T--TTAGTTAT--CATACGAAGG-AC---C-GCG-AGATTGA-CGGAAAGT-GTAA--TTA-CT-TTA-----GGGTGTTAT----AGT-TTGAG-G-C-CTCAGAA--G----AGAGTATTCTAA-AGT-ACAA---ATGATGTGTTTCGAGCG-TG-ATTAATAA-----GAAATAA-ACT--AATTTTGTAATTTTAAAAAA---TAGTA-CTTGGTTTCT-TA----GAACT-----GT-CAGAATCTG--C-TC-----TC--CGTGTCTTGG--CAGAAAC--GA--ACA--AC-CCGTA-GTAG---CAAAGAAACTGT-C---CATTTT--ATTTA-GGT-TTT--TTGATTTCTCACGTTTCGAAGT-CATG-TT-----TTTGACG-----CAGACAACA-CAA-AAAAT-TACAATACCGGGAATAACGCCGTTTACGTTGACAGAA-TTGAGTAAATCTCCGCATATAC---AGTCAG-A---C-------AACC----CAGAT-CATTGAAGT------CATTGCTGCTAAATG-TAACTGtgagctacgcgcct
gi|3 : A----TGGTGAATG-GAATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTAATAGA-AG----ATT-------------TTTTT--CTC-TTTTCCTC-CG-ATGTGCACGCACGTGG-CGTGTT-GGCGTATTAGGgtgtatctaacgccatatatggtgaatggaattgcaatgttacagtagaaagatcatcaaaaagagattgattaatagaagatttttttctcttttcctccgatgtgcacgcacgtggcgtgttggcgtattagggagctacgcgcct
gi|4 : tttttagttatcatacgaaggaccgcgagattgacggaaagtgtaattactttagggtgttatagtttgaggcctcagaagagagtattctaaagtacaaatgatgtgtttcgagcgtgattaataagaaataaactaattttgtaattttaaaaaatagtacttggtttcttagaactgtcagaatctgctctccgtgtcttggcagaaacgaacaacccgtagtagcaaagaaactgtccattttatttaggttttttgatttctcacgtttcgaagtcatgtttttgacgcagacaacacaaaaaattacaataccgggaataacgccgtttacgttgacagaattgagtaaatctccgcatatacagtcagacaacccagatcattgaagtcattgctgctaaatgtaactggtgtatctaacgccatatAGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACACA-----------------G-GGTCG-GGA-GC---------CGA-----CCCTGCC-CACCTCGAAGA-GATGGCCT-TACGGC---AGG-GGT--CTGGG-G------G-TCGCTCAA-GGAAC-C-TAGAAGCTCCGGGGGTAA-AT-C-GTGAAAAATCC--TGCA-TT-TTGC-TATTTCCT-G-GGACCTAAAAA---T--TAC---TGT-TGATATAGC----CA-TTT---TAAAAAAAAAGAAATTT---CTTTT--TTTTTAT--TGAGTTAT--TATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGT-GT--AATTA-CT-TTA-----GGGTGTTACCAAAAGTTTTCAG-G-------------------------------GT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATAA----AGAAATAC-ACT--AATTTTGTAATTCTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----TTCCAAAATATGC-----------C--CGTA-------------------------------GTA-G------CAAAGAAACTGTGT-ATTGTTTCCCATTAGTTTT-TTTCCCTGATTTCTCACGTTTCGACGT-CGTGTTT----ATTTGACA-----C-GACAACA-C-A-AAACTGGAC-ATACCGG-AATAA-----------------AAATTCGAATAAATCT-----TATAC---AGTCAGCG---CA--ACATAAAC----CAGAT-CAACTAA-gagctacgcgcct
gi|5 : AGGGGCGTAGCTA-GCTG----TTAACATGATATGCACGCA-----------------GAGGTCGAGGA-ACTCTACCCTTCGA-----CCC-GCC-AACCTCAAAGA-GTTGGCCTATACGTT---A---------T-GG-G------------TCTT-GG-CC----------------GGTAA-ATTC-GTGCCAGATCT--TTTC-TTTTCGC-CATTTCCTTGTGGGCCTAAAAAA--C--TACAAGCGC-TTTAATAAC----TATTTT---TTAAAAAGAA--------------T--TTTTT-T--GGAGT--T--CATACGAAGG-AC---ATTTGCATATTGACCGGAAAGT-GT-TAATTA-CT-TT
gi|5 : TTTTAA-AGT-ACAA---ATGAAGTGTT--GAGCG-CG-ATTAATTA----AGAAATAC-ACT--AATTT-GTAATTC-ATTAA----TACTA-CTTAGTT-CT-TA----GAAGTATTGCGTCCAAAATCTGC-C-TT-----CT--CGTGTCTTGG--CAGAAAC--GT--ACA--GT-CCGTA-GTAG---AAAAGAAACTGT-C-ATTGTTTTCCAtaaagtacaaatgaagtgttgagcgcgattaattaagaaatacactaatttgtaattcattaatactacttagttcttagaagtattgcgtccaaaatctgccttctcgtgtcttggcagaaacgtacagtccgtagtagaaaagaaactgtcattgttttcca
gi|6 : aggggcgtagctagctgttaacatgatatgcacgcagaggtcgaggaactctacccttcgacccgccaacctcaaagagttggcctatacgttatgggtcttggccggtaaattcgtgccagatcttttcttttcgccatttccttgtgggcctaaaaaactacaagcgctttaataactattttttaaaaagaatttttttggagttcatacgaaggacatttgcatattgaccggaaagtgttaattacT-TTT--CTGATTTCTCACGTTTCGACGT-CATG-TTT---ATTTGATG-----C-GACAACA-C-A-AAACT-GACAATACCGAAAAGAACGCCGTATACATTGACGGAA-TAAAATAAATCTCCGCATAATCA-AAGATAG-AAGTCACTGC-TAACTGTAACAGGTGTATCTAA-CGCCATATA----TGGTGAATG-GAATTGCAATGTTAATTAAAAGTAGAAAGATCATCAAAAAGAGA-TTGAGTGATAGA-AG----A-A-------------TTTTT--TT--CCCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|7 : tCCGGAAATAACGCCGTATACGTTGACGGAT-TCGAAAAAATCTCCTCATATAC---AGTCAG-A--------CATAACC----CAGAT-CAATTAA-T------CA----gagctacggcct
gi|7 : A----TGGTAAATG-GAATTGCAATTTT-----ACAGTAAAAAGATCATCAAAAAGAAAGTT--TTG---GGT----------------------TTTTT--C-------CCTC-CG-ATATGCACGCACGT-G-CGTCTA-GGTGTA-TAGGaagatcgaagtcactgctaattgtaataattatttggtgtatttaaagccatatatggtaaatggaattgcaattttacagtaaaaagatcatcaaaaagaaagttttgggttttttccctccgatatgcacgcacgtgcgtctaggtgtatagggagctacgcgcct
gi|8 : ccggaaataacgccgtatacgttgacggattcgaaaaaatctcctcatatacagtcagacataacccagatcaattaatcaaagatcgaagtcactgctaattgtaataattatttggtgtatttaaagccatatAGGGGCGTACCTA-GCTA----T-AA-ATAATATGCACGCA-----------------G-GGTCG-GAA-AC---------CGA-----ACCTGCC-CACCTCGAAGA-GGTGACCT-TACAAC---AGGGGGT--AT-GG-G------ATCCGCGCAATTA-CC-C-CAGAAGCTCT-TGGGTAA-AT-C-ATGCAAAATCC--TGCA-TTCTTGC-CATTTCCT-G-GGACCTAAA-------------------GTAACAAT----T--TCT---TTAAAAAAAAGT----T---CTTTT--Tgagctacgcgcct
gi|9 : AGGGGCGTAGCTA-GCAA------AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AC---------CGA-----TCCTGTC-CAACTCGAAGA-GGTGATCT-TACGGC---T---GG-------G-G------G-CCGCT----------------------------AA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTACT---GGACCTAAAAA---C--TAC---TGC-TGTAATAACCATGCA-TTT---TTTAAAAGA------------TTTT--TTTTT-T--TGAGTTAT--CATACG
blockSeqs : T ATAT T C . C A C TCTACCCTT ACCGA G C A AAGAGGTCTGGATTAGATACCGCTCAAGGCCCCC CGG T T C AC C C T TGT AAAC AAG C CATGCA ACA GC GAAATTTC AC A AA TC C CAAAT C C C A T A CT AC T CTCCAAAGAGCAAG T C T TTA C ATGC A C TC T AAAA A G CCAC ATTGC C CTCTCCCGAC GA AA CCAACCACACC C ATG CT GT A CC G A T TTACA ACCGC A T A C G A T T AT AAGTCACTGC GTAA G CGCCATA TTGC A TG AATTA G TAGAAGAATTTTTGGGTT GGTTTG C G C G A G TT
blockSeqs : . C . . . A . . . . . . . AGGGGGTATGGGATCCGCGCAATTACCCC TT . . . . . A . G CTA . . TAT . GG GTTC . . . . . ATT . . . T . . A TT . CCCTAAGAAGA T . . . . TG A . . T C . . . . T ACATCACA . . GAACTTTGCG . . GT A . . G . . TA . . . . . . G T . AT TCAAACA . . GT . . TG . . AGTGTTGG CTC C . . . . . G
blockSeqs : . . . . . . . . . . . . . AGGGGTCTGGGGGTCGCTCAAGGAACCT TT . . . . . C . G AC . . CA . AA C . . . . . AG . . . A . . G C . CCTCAGAAG T . . . . TG A . . T A . . . . C CCTT . . GAACAAC . . C A . . G . . A . . . . . . A A . AA CGCAACA . . T . . TG . . TAGAG TT C . . . . . T
blockSeqs : . . . . . . . . . . . . . AGGGGGCCGCTCAAGGCCCTC TT . . . . . T . G G . . GG . TA . . . . . . AT . . . . . . G T . . . . . . . CG . . . . A . . . . C CTC . . GTACAGT . . C . . . G . . . . . . . . . A A . . ACAT . . T . . TT . . AGATT TT T . . . . . T
blockSeqs : . . . . . . . . . . . . . ATGGGTCTTGGCC . . . . . . C . G T . . CA . TA . . . . . . CG . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . ACA . . T . . . . . AGAG CT A . . . . . T
blockSeqs : . . . . . . . . . . . . . TGGGGGCCGCT . . . . . . C . G C . . CA . TT . . . . . . AG . . . . . AC . . . . . . . . AGAA TT T . . . . . T
blockSeqs : . . . . . . . . . . . . . AGAAGTCC . . . . . . . . . T . . . . . . . . T C C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : ***************** AGGGGGCCGCTCAAGGCCCC************************* T** G********** ** G***** C* CCCAGAAG********* A**** C** G* A**** A** AGAN*******************
originalCons : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AC---------CGA-----CCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGC---A---GGT--CT-GG-G------G-CCGCTCAA-GG-CC-C-CAGAAGCTCT-TGGGTAA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTAAAAA---C--TAC---TGC-TGTAATAAC----CA-TTT---TTNAAAAGAA------T---CTTTT--TTTTT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-GTAAAATTA-CT-TTACT---GGGTGTTACCAAAAGTCTTCAG-G-C-CCTAAGA--G----AGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATAA----AGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----GTCCAAAATCTGC-C-TC-----TC--CGTGTCTTGG--CAGAAAC--GA--ACA--GC-CCGTA-GTAG---CAAAGAAACTGT-C-ATTGTTTTCCATTTATGGT-TTT--CTGATTTCTCACGTTTCGACGT-CATG-TT----ATTTGACG-----C-GACAACA-C-A-AAACT-GACAATACCGGAAATAACGCCGTATACGTTGACGGAA-TCGAATAAATCTCCGCATATACA-TAGTCAG-A---CA-TGCATAACC----CAGAT-CAACTAA-T------CA----TGGTGAATG-GAATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTGATAGATAG----A-G-------------TTTTT--CT--TTCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
finalCons : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AC---------CGA-----CCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGCAGGGGGCCGCTCAAGGCCCC-------------------------AGAAGCTCT--GGGTAA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTAAAAA---C--TAC---TGC-TGTAATAAC----CA-TTT---TTNAAAAGAAG----------TTTT--TTTTT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-GTAAAATTA-CT-TTAG-----GGTGTTACCAAAAGC-TTCAG-GCCCAGAAG---------AGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATAAA----GAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----GTCCAAAATCTGC-C-TC-----TC--CGTGTCTTGG--CAGAAAC--GA--ACA--GC-CCGTA-GTAG---CAAAGAAACTGTC--ATTGTTTTCCATTTG-GGT-TTT--CTGATTTCTCACGTTTCGACGT-CATG-TTA----TTTGACG-----C-GACAACA-C-A-AAACT-GACAATACCGGAAATAACGCCGTATACGTTGACGGAA-TCGAATAAATCTCCGCATATACA--AGTCAG-A---CA-TGCATAACC----CAGAT-CAACTAA-T------CA----TGGTGAATG-GAATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTGATAGAAGAN-------------------TTTTT--CT--TTCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
Alignments
lowQualScore : 1111 22222222222222222 222222222 66666666666666666666666666666666666666666666666666666666666666 111111 1111111 3333333333 11111 111111 1 222222 4444444444444444444 111 1111 11111 1111 1111 11111 4444444444 11111111111111 111 111 111 11111 22222 22222 22222222 444444444444444444444444444444 1111111 1 444444444444444444444444 11111 111111111111111111 3333333333333333
lowQualScore : 4 2222 4 4 88888888888888888 8 4 4 666666666 4 4 4 33333333333333333333333333333333333333333333333333333333333333 5 5 5 5 66 5 1 5 666 888888 888 5 1111111 888 11 5555555555 0 66 11111 5 66 66 5 000000 5 5 5 2 6 6 333333 999 8 6666666666666666666 3 6 6 111 6 1111 77777 6 99 3 4444 6 6 4444 66666 1 8888888888 99 99 66666666666666 6 111 666 333 3 6 66666 2 6 6 11111 00000 8 8 8 8 8 0 1 3 6 00000000 333333333333333333333333333333 1 2222222 1 111111111111111111111111 5 22 44444 4 999999999999999999 3333333333333333 4 4 4 4 5 55
lowQualScore : . .... . . ................. . . . ......... . . . .............................................................. . . . . .. . . . ... ...... ... . ....... ... .. .......... . .. ..... . .. .. . ...... . . . . . . ...... ... . ................... . . . ... . .... ..... . .. . .... . . .... ..... . .......... .. .. .............. . ... ... ... . . ..... . . . ..... ..... . . . . . . . . . ........ .............................. . ....... . ........................ . .. ..... . .................. ................ . . . . . ..
lowQualScore : 4 5555 0 0 00000000000000000 0 0 0 000000000 0 0 0 22222222222222222222222222222222222222222222222222222222222222 0 7 7 7 99 0 4 0 222 999999 888 0 8888888 888 22 9999999999 9 99 11111 0 99 99 7 999999 7 7 7 1 7 7 222222 222 2 2222222222222222222 2 7 7 777 7 8888 33333 7 22 2 8888 7 7 2222 77777 0 5555555555 22 22 77777777777777 7 777 888 444 2 7 77777 5 7 7 66666 00000 0 0 0 0 0 8 7 7 7 77777777 777777777777777777777777777777 4 3333333 4 444444444444444444444444 7 11 33333 4 333333333333333333 4444444444444444 4 4 4 4 0 11
consensus : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AC---------CGACCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGCA-------GG------G-GG-------------CCGCTCAA-GG-CC-C-CAGAAGCTCTT--GGG-TAA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTAAAAA---C--TAC---TGC-TGTAATAAC----CA-TTT---TTNAAAAGAAN-------T-TCT--TTT-----TT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-GTAAAATTA-CT-TTA-----GGGTGTTACCAAAA-G-CTTCAG-G-CC-C-A---AG-AAG-AGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATAA----AGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----GTCCAAAATCTGC-C-TC-----TC--CGTGTCTTGG--CAGAAAC--GA--ACA--GC-CCGTA-GTAG---CAAAGAAACTGT-C-ATTGTTTTCCATTTA-GGT-TTT-----CTGATTTCTCACGTTTCGACGT-CATG-TT----ATTTGACG-----C-GACAACA-CA-AAAC-T-GACAATACCGGAAATAACGCCGTATACGTTGACGGAA-TCGAATAAATCTCCGCAT--------ATA--------CA--AGTCAG-A-CAT----G-CATAAC--C----CAGAT-CAACTA----AT------C-----------ATGGTGAATG-GAATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTGAT----A-GA-AG----A-GTTTTT----------CT-TTCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
Reference ( family-388 ) : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AC---------CGACCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGCA-------GG------G-GG-------------CCGCTCAA-GG-CC-C-CAGAAGCTC-T--GGG-TAA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTAAAAA---C--TAC---TGC-TGTAATAAC----CA-TTT---TTNAAAAGAAG-------T-TTT--TTT-----TT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-GTAAAATTA-CT-TTA-----GGGTGTTACCAAAA-G-CTTCAG-G-CC-C-----AG-AAG-AGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATAA----AGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----GTCCAAAATCTGC-C-TC-----TC--CGTGTCTTGG--CAGAAAC--GA--ACA--GC-CCGTA-GTAG---CAAAGAAACTGT-C-ATTGTTTTCCATTTG-GGT-TTT-----CTGATTTCTCACGTTTCGACGT-CATG-TT----ATTTGACG-----C-GACAACA-CA-AAAC-T-GACAATACCGGAAATAACGCCGTATACGTTGACGGAA-TCGAATAAATCTCCGCAT--------ATA--------CA--AGTCAG-A-CAT----G-CATAAC--C----CAGAT-CAACTA----AT------C-----------ATGGTGAATG-GAATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTGAT----A-GA-AG----A-NTTTTT----------CT-TTCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|1 : AGGGGCGTAGCTA-GCTG----T-AA-GTGATATGCACGCAGGATCGGGTCAGTCGCAG-GGTCG-GGA-AC---------CGACCCTGCC-CACCTCGAAGA-GGTGGCCT-TACGGCA-------GGTTTCTGGTGG-------------TCGCTTAA-AG-TCAC-CAGAAGCTC-T--GGGGTAA-AT-C-GTGCAAAATTC--TGCA-TTCTCGC-CATTTCCT-G-GGACCTTAAAA---C--TAC---TGC-TGTAATAAT----CA-TTT---TTTAAAAGAAT-------TATCT--TTTCATTATT-T--TGAGTTAT--CATACGAAGG-AC---A-GTG-AGGTTGA-CGGAAAGC-GTAAAATTA-TT-TTACTCTTGGGTGCTACCAAAA-GTCTTCAG-GACC-C-----TA-AGA-AGAGTATCTCAA-AGT-GCAA---ATGAAGTGTTT-GAATG-TA-ATTAATAATTTAAGAAATAC-ACT--AATTTTGTAATTTTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----TTCCATATTATGT---TC-----TC--TATGTCTTGA--TGGAAAC--GA--ACA--GC-CCGTA-GTAT---CAATGATACTGT-CGATTGTTCTCCATTTATGAT-TTT-----CTAATTTCCCACGTT-------------------ATTTGACG-----C-GACAACC-CA-AAAC-T-GACAATACCGGATATAACACCGTATACGTGGACAGAA-TCGAATAAATCTCCGCAT--------ATA--------CAGTAGTCAG-A-CAT----G-CATAAC--C----CAAAT-CAACTA----AT------C-----------ATAGCTAA---GAATTGCAATGTT-----ACAGTAGATAGATAATCAAAAAGGGA-TTGATTGAT----T-GATAGT---A-GTTTTT----------CT-TAGTCCTC-CG-ATATGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|10 : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACGCA-----------------G-G-TCG-GGA-ACCGAAC----CGACCCTGCC-CATCTCGAAGA-GGTGGCCT-TACGGCA-------GG------G-GG-------------CCGCTCAA-GG-CC-CTCAGAAGCTCTT--GGG-TAA-AT-C-GTGTAAAATCC--TGCA-TTCTCGC-CATTTCCT-G-GGCCCTAAAAA---CTATAC---ATC-TGTAATAAC----CA-TTT---TT
gi|11 : --TTT-----TT-T--TGAGTTGT--CATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGC-G--AAATTA-CT-CTA-----AGGTGTTATCAAAATA-CTTTAGTG-CC-CTA---AG-AAGAAGAGTATCTCAA-AGT-ACAA---ATGAAGTGTTT-GTGCG-----------------GAA--AC-ACT--AATCTTGTAATTTTATTAAC---TACTA-CTTGGTTTCT-TA----AA
gi|12 : CTA----A-------------------ATGATGAATG-GAATTGCAA------------------AGATCATCAAAAAGAGA-TTAATTGAT----A-GA-AGTGTTG-GTTTTG----------TT-TTCTTCTC-CG-ATGTGCACGCACGC-G-CGTGTT-GGTGTA-GAGtagaa
gi|13 : atcaaagattgaagtcgctgcttactgtaactggtgtatctaccaccT-----GTCTAAAATCTGCTC-TCCCGACTC--CGTGTCTTGG--TAAAATC--GA--ACTTTGCGCCGTACGTAGATGCAAAGAAACT-----ATTGTTTTCCATTTA-GGTATTT-----CTGATTTCTCACGTTTCGACGT-CATC-TT----cgagctacgcgcct
gi|14 : -----------ATGGTGAATGAGAATT-------------ACAGTAGAAAGATCATGAAAAA-AGA-T-GAT-GAT----AAGT-AG----A-GTTTTTGGT-------TTGTTCCCCTC-CG-ATGTGCACGCATGT-GACGTGTTGGGCGTA-TAGGt
gi|15 : CC--TGCA-TTATCGC-CATTTCCT-G-GGACCTAGAAA---G--TAC---TGC-TGTAATCAT----GG-TTTACATGCAAAAAAAA----------TT--TTT-----TT-T--AAAGTTAT--CATACCAAGG-AC---A-TTG-AGATTGA-CAGAAAGT-GTAaagctacgcgcct
gi|16 : A----T-AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AT---------CAACCCTGCC-CACCTCGAAGA-GGTTGCTT-TACGACA-------AG------A-GGTCTGGATTAGATACCGCTCAA-GGCCC-C-CAGAAGCTCTT--GGG-T
gi|17 : AT--------ATA--------TA---GTCAG-A-CAT---------AAC--C----CAGGT-CAACTA----AT------T-----------A
gi|17 : tTGGTGAATG-GGATTGCAATGTT-----ACAGTAGAaatattgaagtcactgctaactgtaaccagtgtatctaacgccatgtggtgaatgggattgcaatgttacagtaga
gi|18 : tatatatagtcagacataacccaggtcaactaattaaatattgaagtcactgctaactgtaaccagtgtatctaacgccatgAGGGGCGTAGCTA-GCTAATATT-AA-ATGATATGCACACA-----------------G-GGTCG-GGA-AT---------CGATCCTGCC-TGCCTCGAAGA-AGTGGCCT-TACGGCA-------GG------G-
gi|19 : AAAGATCATCAAA--GAGA-TTGATTAAT----A-GA-AG----A-GTTTTT----------TT-TT---CTC-CA-ATGTGCAC-------G-CGTGTT-GGCGTA-TGGG
gi|2 : AGAGGCGTAGCTA-ACTA----T-AA-ATG-TATGCACGTA-----------------GCGGTCG-GGACAC---------CGATC-TGCCGCACCTC-AAGACAGTGGCCT--ACGGCA-------GA------A-GT-------------CCG----A-GG-C---------GC-------GT-TAATAT-CCGCCCAAAATCCACT-CACTTCTCGCTCATTCCCT-G-GAACCTAAAAAAAAC--TAC---TGCCTGTAATCGA----CA-TTT---CGGAAAAAAAC-------T-TCCACTTT-----TT-TAATGACATATTCCATGCGAAGGCACCAAA-TTG-AGAATGA-CGTAAAGCCGTTAAATTATCTATTA--------CTTTACCAAAA-G-CTTCAG-G-CT-CCAAAGAGCAAG-AGAGTA-CTCAACAGTTACAATTAATGACAT-TTT-GAGCGATGCATTAATAA----A-AAATACCACTTCCATTTT-TAA----ATTAAAAAATACTAACTTAGTTTCCGTACCACGAACT-----GTTCAAAATCTGA-CATCACA--TCGACGTGTTATGAAACAGAAACCCAACCACA--CC-TCA-A-GTAG---CCAACTAATTGT-CTATTGTTTTCCATCTG-G-T-TCC-----CTTTATTCTCACGTTTC-ACGAACATG-TCTTACACTTTACAACCGCC-GACAACATCACAAAC-T-TACAATACCGGAAATAACGCAGTTTACGTTGACGGAA-TCGAGCAAATATCCGCAT--------ATA--------T---ATTCAG-T-CAA----A-CATAAC--C----CAGAT-CAATTA----AT------gagctacgcacct
gi|20 : ccGGCGCGTAGCTATGCTAC---T-AA-ATGATATGCACGCA-----------------G-AGTCG-GGA-AC---------CGACCCTGCC-CATTTGGAAGA-GGTGACCT-TAC
gi|21 : acgTCAAAAAGAGA-TTGATTGATTGATA-GA-AG----A-ATTTTTGGGTTTTTTTCT-TTTTTCTC-CG-ATGTGCACGCACGT-G-CGTGTcgg
gi|22 : -TTGATTGAT----C-G---------------------------T-TTATCCTCGCGCATGTGGACGCACGT-G-CGTGTT--GCGTA--AGG
gi|3 : g-----TT-T--TTAGTTAT--CATACGAAGG-AC---C-GCG-AGATTGA-CGGAAAGT-GTAA--TTA-CT-TTA-----GGGTGTTAT----A-G-TTTGAG-G-CCTC-----AG-AAG-AGAGTATTCTAA-AGT-ACAA---ATGATGTGTTTCGAGCG-TG-ATTAATAA-----GAAATAA-ACT--AATTTTGTAATTTTAAAAAA---TAGTA-CTTGGTTTCT-TA----GAACT-----GTC-AGAATCTGC---TC-----TC--CGTGTCTTGG--CAGAAAC--GA--ACA--AC-CCGTA-GTAG---CAAAGAAACTGT-C---CATTTT--ATTTA-GGT-TTT-----TTGATTTCTCACGTTTCGAAGT-CATG-TT-----TTTGACG-----CAGACAACA-CA-AAAAAT-TACAATACCGGGAATAACGCCGTTTACGTTGACAGAA-TTGAGTAAATCTCCGCAT--------ATACAGTCAGACA--ACCCAG-ATCATTGAAGTCATTGCTGC----TAAATGTAACTGGTGTAT------CTAACGCCATATATGGTGAATG-GAATTGCAATGTT-----ACAGTAGAAAGATCATCAAAAAGAGA-TTGATTAAT----A-GA-AG----ATTTTTTT----------CTCTTTTCCTC-CG-ATGTGCACGCACGTGG-CGTGTT-GGCGTATTAGGtgagctacgcgcct
gi|4 : AGGGGCGTAGCTA-GCTA----T-AA-ATGATATGCACACA-----------------G-GGTCG-GGA-GC---------CGACCCTGCC-CACCTCGAAGA-GATGGCCT-TACGGCAGGGGTCTGG------G-GG-------------TCGCTCAA-GGAAC-C-TAGAAGCTC-CGGGGG-TAA-AT-C-GTGAAAAATCC--TGCA-TT-TTGC-TATTTCCT-G-GGACCTAAAAA---T--TAC---TGT-TGATATAGC----CA-TTT---TAAAAAAAAAGAAATTTCT-TTT--TTT-----TTAT--TGAGTTAT--TATACGAAGG-AC---A-GTG-AGATTGA-CGGAAAGT-GT--AATTA-CT-TTA-----GGGTGTTACCAAAA-G-TTT------------------------------TCAG-GGT-ACAA---ATGAAGTGTTT-GAGCG-TG-ATTAATAA----AGAAATAC-ACT--AATTTTGTAATTCTATTAAA---TACTA-CTTGGTTTCT-TA----GAACT-----TTCCAAAATATGC-----------C--CGTA-------------------------------GTA-G------CAAAGAAACTGTGT-ATTGTTTCCCATT---AGT-TTTTTTCCCTGATTTCTCACGTTTCGACGT-CGTGTTT----ATTTGACA-----C-GACAACA-CA-AAAC-TGGAC-ATACCGG-AATAA-----------------AAATTCGAATAAATCT-----T--------ATA--------C---AGTCAGCG-CA-----A-CATAAA--C----CAGAT-CAACTA----Agagctacgcgcct
gi|5 : AGGGGCGTAGCTA-GCTG----TTAACATGATATGCACGCA-----------------GAGGTCGAGGA-ACTCTACCCTTCGACCC-GCC-AACCTCAAAGA-GTTGGCCTATACGTTA-------TG------G-G------------------TCTT-GG-CC-----------------GG-TAA-ATTC-GTGCCAGATCT--TTTC-TTTTCGC-CATTTCCTTGTGGGCCTAAAAAA--C--TACAAGCGC-TTTAATAAC----TATTTT---TTAAAAAGAA------------T--TTT-----TT-T--GGAGT--T--CATACGAAGG-AC---ATTTGCATATTGACCGGAAAGT-GT-TAATTA-CT-TT
gi|5 : TTTTAA-AGT-ACAA---ATGAAGTGTT--GAGCG-CG-ATTAATTA----AGAAATAC-ACT--AATTT-GTAATTC-ATTAA----TACTA-CTTAGTT-CT-TA----GAAGTATTGCGTCCAAAATCTGC-C-TT-----CT--CGTGTCTTGG--CAGAAAC--GT--ACA--GT-CCGTA-GTAG---AAAAGAAACTGT-C-ATTGTTTTCCAtaaagtacaaatgaagtgttgagcgcgattaattaagaaatacactaatttgtaattcattaatactacttagttcttagaagtattgcgtccaaaatctgccttctcgtgtcttggcagaaacgtacagtccgtagtagaaaagaaactgtcattgttttcca
gi|6 : aggggcgtagctagctgttaacatgatatgcacgcagaggtcgaggaactctacccttcgacccgccaacctcaaagagttggcctatacgttatgggtcttggccggtaaattcgtgccagatcttttcttttcgccatttccttgtgggcctaaaaaactacaagcgctttaataactattttttaaaaagaatttttttggagttcatacgaaggacatttgcatattgaccggaaagtgttaattacT-TTT-----CTGATTTCTCACGTTTCGACGT-CATG-TTT---ATTTGATG-----C-GACAACA-CA-AAAC-T-GACAATACCGAAAAGAACGCCGTATACATTGACGGAA-TAAAATAAATCTCCGCATAATCAAAGATA--------GA--AGTC---A-C-T----G-C-TAAC--TGTAACAGGTGTATCTA----ACGCCATAT-----------ATGGTGAATG-GAATTGCAATGTTAATTAAAAGTAGAAAGATCATCAAAAAGAGA-TTGAGTGAT----A-GA-AG----A-ATTTTT----------TT-CCCTCCTC-CG-ATGTGCACGCACGT-G-CGTGTT-GGCGTA-TAGG
gi|7 : tCCGGAAATAACGCCGTATACGTTGACGGAT-TCGAAAAAATCTCCTCAT--------ATA--------C---AGTCAG-A----------CATAAC--C----CAGAT-CAATTA----AT------C-----------Agagctacggcct
gi|7 : -----------ATGGTAAATG-GAATTGCAATTTT-----ACAGTAAAAAGATCATCAAAAAGAAAGTT--TTG------------G----G-TTTTTT----------C------CCTC-CG-ATATGCACGCACGT-G-CGTCTA-GGTGTA-TAGGaagatcgaagtcactgctaattgtaataattatttggtgtatttaaagccatatatggtaaatggaattgcaattttacagtaaaaagatcatcaaaaagaaagttttgggttttttccctccgatatgcacgcacgtgcgtctaggtgtatagggagctacgcgcct
gi|8 : ccggaaataacgccgtatacgttgacggattcgaaaaaatctcctcatatacagtcagacataacccagatcaattaatcaaagatcgaagtcactgctaattgtaataattatttggtgtatttaaagccatatAGGGGCGTACCTA-GCTA----T-AA-ATAATATGCACGCA-----------------G-GGTCG-GAA-AC---------CGAACCTGCC-CACCTCGAAGA-GGTGACCT-TACAACA-------GG------G-GGTATGGGAT-----CCGCGCAATTA-CC-C-CAGAAGCTCTT--GGG-TAA-AT-C-ATGCAAAATCC--TGCA-TTCTTGC-CATTTCCT-G-GGACCTAAA-------------------GTAACAAT----T--TCT---TTAAAAAAAAG-------T-TCT--TTT-----Tgagctacgcgcct
gi|9 : AGGGGCGTAGCTA-GCAA------AA-ATGATATGCACGCA-----------------G-GGTCG-GGA-AC---------CGATCCTGTC-CAACTCGAAGA-GGTGATCT-TACGGCT-------GG------G-GG-------------CCGCT------------------------------AA-AT-C-GTGCAAAATCC--TGCA-TTCTCGC-CATTTACT---GGACCTAAAAA---C--TAC---TGC-TGTAATAACCATGCA-TTT---TTTAAAAGA---------T-TTT--TTT-----TT-T--TGAGTTAT--CATACG