lowQualScore : 11111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111 3333333333333333333333333
lowQualScore : 11 33 222222222222222 111111 22222222222 11 1 111111 2 888888888888888888 111 1 11111 444444444 44444444444444444444444444444444444444444444444444444444 1 1111 1111 44444444444444444444 11 11 1 2222 66666666666666666666 22222 1 555555555555 1 777777777 1 8888888888888888888888888888888888888888888888888888888888888888888888 2 333 1 555 222 1 1 1 444444444 11 1111 22 22 1 1 2222 2222222222 1111 333333333333 111 2222222222 111111 55555555555 1111 444444444444444444 11 111 11 88888888888888888888888 1 4 4 1 4 0000000000000000000000000 4 1 22 1
lowQualScore : 33 4 4 4 4 66 11 2 4 4 666666666666666 66 99 4 111111 4 55555555555 4 8 4 4 8 4 4 1 4 44 1 1 999999 4 2 0 222222222222222222 3 888 3 77777 888888888 8 6 3 00000000000000000000000000000000000000000000000000000000 8 0 3333 99 3333 99999999999999999999 6 88 2 11 3 7 8888 66666666666666666666 66666 3 999999999999 3 666666666 3 4444444444444444444444444444444444444444444444444444444444444444444444 0 6 6 2 555 5 555 7 9 555 88 3 3 7 3 3 555555555 66 9 3333 00 88 77 0 0 0000 9 6 1111111111 99 4444 5 444444444444 0 444 8 1111111111 999999 55555555555 6666 0 5 7 333333333333333333 22 88 111 11 2 4 33333333333333333333333 5 0 0 5 0 6 2222222222222222222222222 0 5 11 5 6 6
lowQualScore : .. . . . . .. .. . . . ............... .. .. . ...... . ........... . . . . . . . . . .. . . ...... . . . .................. . ... . ..... ......... . . . ........................................................ . . .... .. .... .................... . .. . .. . . .... .................... ..... . ............ . ......... . ...................................................................... . . . . ... . ... . . ... .. . . . . . ......... .. . .... .. .. .. . . .... . . .......... .. .... . ............ . ... . .......... ...... ........... .... . . . .................. .. .. ... .. . . ....................... . . . . . . ......................... . . .. . . .
lowQualScore : 44 6 4 4 4 77 00 9 4 4 666666666666666 11 55 4 111111 4 66666666666 4 9 4 4 9 4 4 0 4 11 1 4 666666 3 5 5 000000000000000000 2 333 3 88888 777777777 0 8 2 66666666666666666666666666666666666666666666666666666666 0 0 2222 22 8888 55555555555555555555 7 66 5 00 3 3 3333 33333333333333333333 77777 3 777777777777 3 000000000 3 5555555555555555555555555555555555555555555555555555555555555555555555 0 0 0 5 000 5 000 3 0 000 77 7 3 0 3 3 000000000 33 0 7777 77 33 00 0 0 0000 0 7 8888888888 22 2222 0 888888888888 8 000 0 8888888888 222222 33333333333 3333 2 2 1 555555555555555555 11 88 777 00 5 2 00000000000000000000000 0 0 0 0 0 0 0000000000000000000000000 0 0 00 0 0 0
consensus : CAAACGACAA-ACAAAT-TGC-A-GGG-GCGGA-TCCAGGAATGTT-T-GAAA-------GGGG-TG-TCTA--CA--TT-TTNA-CA-T-TT-----------ATTT-A-GCAAA-TTA-T-T-TT-AACGAA-AGGGGGGTGGGGN-----GGGTCCGACCCCCTAG----ACCCCCC------CCCTCTGGATC-C-CCC-CTGN-A-TTGTACG-NA----ATAAA-CGAAATATCAAA-CT--CTA-TAACA-AAA-AAA------------------T-T-AA-TT----C--TCT-CTTCGAGCGC-CAGGCTGCAA--TG---NCGT-------GA-CT--------AT-TTATTACGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCGGT----GGAGATGA----AA-----A--TG-TA-TGATTCG--AT-TGTTTGC-GGATT-----TA-TGACAATGC-AATT-TT-AA---AAATTTT-ACATTTTGCATTCNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAACACAGGAAGGAGGTGCACCCCATTNAACGCGGTAGACTTGAAATGTTTTGCCGATTACT--TACNNTNC-CCCCCT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCAAAATAATG-TT-ACG-TTAATTCGACATGCCCG-AAGTTAC-AAA-TCA--C-TGGATTTGT-CACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGAAATAA---A-TTTAA-------T--AGTATAC------ATGGAGATTTACCAC-C-CCCAC-CCCCGAACGCAGGCTGCAATGTCG-CGA--C--AT-----A-TTTATTACGTCCCC--CA---TCAGT--ANGGACC------TGTCGAAGCGGTG---GGGGGTGGGGT-GGGTCCGTTGAAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGAACAGGTGATCAATA------------------CTCGT--GTCCCAAAATACAGTGGCGGCTTTGTAGGGGGGAAGGGG
Reference ( gi|1 ) : CAGACGACAA-ACAAAT-TGC-A-GGG-ACGGAATCCAGGAATGTT-T-GAAA-------GGGA-TG-TCTA--CA--TT-TTGA-CA-T-TT-----------ATTT-A-GCAAA-TTA-T-T-TT-AATGAA-AGGAGGGTGGGGT-----GGGTCCGACTCCCTAG----CCCCCCCCCCCCTTCCTCTGGATC-T-CCC-CTGT-A-TTGTATG-TA----ATAAA-CAAAATATCAAA-----TTA-TAACAGAGA-AAA------------------T-T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGT-------AA-CT--------AT-TTATTATGTTCCCCCACAT-AAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-CA-TGATTCG--AT-TGTTTGC-GGATT-----T--TGA-AATGC-AATT-T-------AAATTTT-ACATTTTGCA--------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACA-AAAGAAGGTGCACCCCACTGAAC---GTAGACTTGAAAT---TTACTTATTGCG--TACTTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATGATG-TT-ACG-TTAATTCGATATGCCCG-AAGTTAC-AAA-TCA--C-TGGATTTGT-CACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGATATAA---A-TTTAA-------T--AGTATAC------ATGGAGATTTACCAC-CACCCAC-CCCCGAACGCAGACTGCAATGTCG-CGA--C--AC-----A-TTTATTACGTCCCC--CA---TCAGT--AGGGGCCAGAATTTGTCAAAGGGGTG---GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGAT-AACGACCAG-TGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAA-TACAGTGGCGGATTTAGAGGGGGCAGGGAGCC
gi|3 : CAGACGACAA--CAAAT-TGC-A-GGGAACAG-ATCCAGGAATGTT-T-GAAA-------GGAG-TG-TCTA--CAT-TT-TTGA-CA-T-TT-----------ATTT-A-GCAAA-AT--T-T-TT-AATGAA-CAGGGGGTGGGGT-----GGGTCCGAC-CCCTAG----ACCCACC------TCCTCTGGATC-C-CCCACTGT-A--TGTATGTTT----ATAAA-CAAATAATCAAA-----CTA---------A-TAA------------------T------TT----C--TCT-CTTCGAGCA--CAGGCTGC-A--TG---ACGT-------GA-CC---------T-TTATTATGT--CCCCACAT-GAG-TATGGACTGTCAAAGCAGTGCCAGGAGATGAAATTAA-----A--TGTTA-TGATTCGAAAT-TGTTTGT-GGATT-----TA-TGA-AATGC-AATT-TTAAA---AAATTTT-ACATTTTGCATTCNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGAAAGGAGGTGCACCCCATTCAATGCGGTAGACTTGAAATG--TTGTTT-TTCCGATTACTATAC-TCCCCT-ATACATTCGTGCACCCACTT-CAAAGTCAAG----GCCAAAATAATG-TT-ACG-TTAATTCGACATGCCCGAAAGTTACAAAA-TTA--CTTGGATTTGT-CACA--A-------ATAT--ATCA----ACCATTTT-ATAG-CGG--ATAA---A-TTTAATAGATACT--AGTACAC------ATGGCGA-TTACCACTCACCCAC-CCCAGAACGCAGCCTGCAATGCCG-CGA--C--AT-----ATTTTAATATGACCCA--CA---
gi|8 : aCAAAAGACAA-ACAA-T-TGC-A-GGT-GCGGA-TCCAGGAATATT-T-GAAAAAGG---GGGG-GG-GCTA--TA--TT-TTCA-CA-T-TTT----------ATTT-A-GCAAA-TCA-T-T-TT-TTCAAA-AGGTGGG-GGAGA-----GA----GAC-CTCTAGACCACCCCCCCCCCCCCCCCCC-----C-C-CCC-CCCC-A--CGTGTG-GA----ATA
gi|10 : CAAACGACACTGCAAATCTGC-AAGGG-GCCGA-TCCAGGAAT-TT-T-GAAG-------GG---T--TCTAAGCACTTT-TTGA-CAATGTT-----------ATTT-AAGCGA--TTA-T-T-TTAAACGAA-AG--CGGCGGGGTCCTTAAGGTC--AATCCCTAg
gi|17 : caCAGACGACAC--CAACT-TGC-A-GGG-TCGTA-TAAAGGAATGTT-T-GAGA-------GGGAGTG-TCTA--CA--Tt
gi|15 : caAAACGACAG-A-AAAT-TTC-A-AGG-GTGGA-TCAAATGATTTT-T-GAAA-------TGGG-TT-TCTA--CA--TTATT------C-TT-----------ATTT-A-GC-AA-TTGTT-T-TT-CATGAA-AG--GGGTGGGG
gi|6 : ACGACAA-ACAAAT-TGC-A-GGG-ACAGA--TCAGGAATGTT-T-GAAA-------GGAG-TGGTCCT--CA--TT-TTGAACA-T-TTTACATAATCGTATTTTA-GCAAAATTA-TAT-TC-AATGAATAGGGGGGTGG--T-----GGGTCCGACCCCCTAG----ACCCCCC------TCCTCTGGATC-C-CCCACTGTAA-TTGTAAG-TATACTAGAAA-C-AAATATCAAA-----CTA-TAACAattg
gi|5 : agcACGACCG--CAAAT-TCC-A-GGG-GCGGA-TCCAGGAATTTT-T-GAAACGGGGGGGGGG-T--TCTA--CT--TT-TTTA-CA-T-TT-----------ATTT-A-ACAAA-TTA-TCT-TT-AACGAA-AAG---------------GGGTCCGACCCC---G-------------------CTCGGGCCC-G-CAA-CTGA-A-TTGTAAA-AA----AAAAACCGAAAT-TCAAACTT--TTACTAACAGAAATATA------------------TAT-AAGTT----CCATCT-CTT-GAACGC-AAGACTGTAA--AG---ACGT-------GA--T--------ATATTATTA
gi|18 : GACGA-ACAA-T-TGCTA-GGG-ACGGA-TCCAGGAATGTTGT-GAAA--------GGA-TG-TCcttc
gi|16 : acaA-ACAAAT-TGC-A-GGG-GTGG-ATCCATGAA-GTT-TCTAAA-------GGGG-T-----------------------T-CT-----------ATTT-A--CAAA-TTA-T-T-TT-TACTAA-GGGGGGG
gi|12 : c-TCTA--CA--TT-TTTA-CA-T-TT-----------ATAT-A-GCAAA-ATA-T-T-TT-AACGAA-GGGGGAG-GGGGA-----GA---CAAC-CCCTAG----ATCCCCC-------CGGGTGGATC-CGCCA-CTGA-A-TTGTACA-GAT---TTAAA-CAAAg
gi|4 : A--TT-TTAA--A-T-TT-----------ATTT-AGGCAAA-TTG-T-TATT-AACGGG-GGGGGGGGGGGGG-----GGGta
gi|4 : CCTCCTTCTGGATCGT-CGC-CTGG-AATTGTAC--TAGGATATAAA-CGCAATAGTAAAACTTCTTAGTGACACAAA-AAAACAGGTAGGCAGCATAGAT-TGAA-TTACCGC--TCT-TTT---GCTCTCAGGC-ACAG--CGTTTGCGTGTTTATGAG-CC--------AT-TTATTATGTTCTAT-ACAT-AAAATATGGCTTG---AAGCGGT----AGTGATGA----AA-----AAGTG-TAATAATTTG--ACCTGTTTACAGGATTGACTAT--TGGCAATGCTAATTAT-------AAGTTTT-ACATTTTGggggggtggggggggggggtgggggacttgaaatcctccttctggatcgtcgcctggaattgtactaggatataaacgcaatagtaaaacttcttagtgacacaaaaaaacaggtaggcagcatagattgaattaccgctcttttgctctcaggcacagcgtttgcgtgtttatgagccatttattatgttctatacataaaatatggcttgaagcggtagtgatgaaaaagtgtaataatttgacctgtttacaggattgactattggcaatgctaattataagttttacattttgacttcgcttgcctatactgcaaca
gi|13 : attttaaatttatttaggcaaattgttattaacgggggggggggggggggggggggggtggggggggggggtgggggacttgaaat-AAA------------------T-A-AA-TT----T--CCT-GCCCGAACGT-T-GGCTGCAA--TG---TCGT-------GACCT--------AT-TTATGACGTT-CCTCACAT-acttcgcttgcctatactgcaaca
gi|2 : atagtatT----C--TCTGCTTCGAGCAC--AGGCTGCAAATTG---AC-T-------AC-CT--------AT-TTATT-TGT-CCCCCACATTGAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AATGTAAA--TG-TT-TGATTCG--CT-TGTTTGC-GGATC-----TAATGATAATGC-AATT-TTTAAAAAAAATTTTTCCATTTTGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAACACA-GAAAGAGGTGCACCCCATTGAAC---GTAGACT-GAAATGTTTTACCGATTACT--TCCGCCCCGCCCCCTGATAAATTCGTGCAATCTCTTGCAAAG---AGCGTAGCCAAAATTATGGTTGACGATTAATTCGAC-TGCCCGCGAGTTAC-AAAATTA--C-TGGATTTGTTCACA--ATACCGTGGTAT--ATCA----GA-ATTT--ATCG-CAGATA--A---A-TCTAA-------T--AGTATACTAGTACATGGCGATT-ACCACTCACC-ACGCCCCGAACGCAGACTGCAATGCCG-CGA--CAAAT-----A-TTTATTACGTCCCC--cagtgaaggatccagaatttgtcgaaagggagagggg
gi|7 : aAC-CAGGCTGCAA--TG---TCGT-------GA-ATCATGGCCAAT-TTATCACGTCCCCCacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtaaagattaacgaacaggtgatcaatactcgtgtcccaaaatacagtggcggctttgtaggggggaaggggggc
gi|11 : tgtccgaagttaaatgtcatactgttctgtgatggtaacattcgtcagttgaaagttttggtaaacacaaataacatactttaatagtgtacatggagatggacaccccaacccccaTATCACT--TACCTTTC-CCCCAT-ATACATTCGTGAACCTTTTT-CAAAGC--AA----GTTT-AATAATG-CT-ACG-----TTCGATATGCCCG--AGTTAC-AAA-TCA--A-ACGTTTTGT-CACA--A-------ATAT--ATCA----AA
gi|7 : TGTCCG-AAGTTAA-ATG-TCATAC-TGT-TCTGT-GATGGTA-------ACATTCGTCAGTTGAAAGTTTTGGTAAACACAAATAACATACTTTAA-------T--AGTGTAC------ATGGAGATGGA-CAC-C-CCAAC-CCCC-AAC-CAGGCTGCAATGTCG-TGAATC--ATGGCCAA-TTTATCACGTCCCC--C
gi|9 : GGTTTGT-CACA--A-------ATAT--ATCA----TACATTTTA-TAA-CA----TAA---A-TTTAT-------TTTAGTATAC------ATGGAAAT-----AC-C-CCCTC-CCCCGAACGTAGGTTACAAT-------------AC---------TGTTACGTCCCCAACA---TCGAG--GGGGGCC----------------------GGGGGT-GGGT-GGGTCCGTTGAAAGAG
gi|14 : atcT-TACA--A-------ATCA--ATCA----AACATTATA-TA---AGAAATAA---A-TGCAA-------T--AGTATAT------ATGGAAA--TACT-C-TCCCCA----CCGAACGTAGGTTACAATG--G-CG-----------------TAT--CCCCCCC--CA---TCAGT--
gi|13 : tA-------T--AGTATAA------AT--AAATTT--------CCTG---CCCGAACGTTGGCTGCAATGTCG-TGA--C--CT-----A-TTTATGACGTTCCTCACA---TCAGTGAAGGATCCAGAATTTGTCGAAAGGGAG---AGGGGg
gi|3 : CGAGCACAGGCTGCA-TGACG-TGA--C---C-------TTTATTATGTCCCCA-CA---TGAGT--ATGGAC-------TGTCAAAGCAGTGCCAGGAGATG
gi|2 : acagacgacaacaaattgcagggaacagatccaggaatgtttgaaaggagtgtctacatttttgacatttatttagcaaaatttttaatgaacagggggtggggtgggtccgacccctagacccacctcctctggatcccccactgtatgtatgtttataaacaaataatcaaactaataatttctctcttCGAGCACAGGCTGCAA-ATTGACTA--C--CT-----A-TTTATT-TGTCCCC--CACATTGAAT--ATGGAC-------TGTCAAAGCAGTG---GAGaaattaaatgttatgattcgaaattgtttgtggatttatgaaatgcaattttaaaaaattttacattttgcattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacagaaaggaggtgcaccccattcaatgcggtagacttgaaatgttgtttttccgattactatactcccctatacattcgtgcacccacttcaaagtcaaggccaaaataatgttacgttaattcgacatgcccgaaagttacaaaattacttggatttgtcacaaatatatcaaccattttatagcggataaatttaatagatactagtacacatggcgattaccactcacccaccccagaacgcagcctgcaatgccgcgacatattttaatatgacccaca
gi|2 : atctctgcttGGTAAAGATTAACGAACAGGTGATCAATA------------------CTCGT--GTCCCAAAATACAGTGGCGGCTTTGTAGGGGGGAAGGGatgaaatgtaaatgtttgattcgcttgtttgcggatctaatgataatgcaatttttaaaaaaaatttttccattttgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaaacacagaaagaggtgcaccccattgaacgtagactgaaatgttttaccgattacttccgccccgccccctgataaattcgtgcaatctcttgcaaagagcgtagccaaaattatggttgacgattaattcgactgcccgcgagttacaaaattactggatttgttcacaataccgtggtatatcagaatttatcgcagataaatctaatagtatactagtacatggcgattaccactcaccacgccccgaacgcagactgcaatgccgcgacaaatatttattacgtccccacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtaaagattaacgaacaggtgatcaatactcgtgtcccaaaatacagtggcggctttgtaggggggaaggggggc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TGTCCGAAGTTAAATGTCATACTGTTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111 1111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111
lowQualScore : 11 2222222 11 11111111111 222222222222222 11111 1 111111 11 33333333333 1 111 11111111111111111111111111111111111111111111111111 1111111 1 1111 11111111 2222222 1 1 1 2222 33333333333333 111 2222 1 333333 1 1 3333333 1 0000000000000000000000000000000000000000000000000000000000000000 11 1 222 3333 1 1 1 222222222 1 1 11 11 1111 1111111 1111 11 11 111 1111111 111111 22222222222 22222222222222 11 1 0000000000000000000 1 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 444444444444444444 22 1
lowQualScore : 11 3 4 4 4 4 4 1 4 4 1111111 4 11 55 88 4 88888 4 4 99999999999 8 4 0 4 4 8 4 4 555 555555555555555 6 0 3 66666 0 77 1 0 55 666666 1 1 5 5 99 77 6 88888888888 6 7 222 22222222222222222222222222222222222222222222222222 8888888 8 0 7777 0 0 55555555 6666666 0 8 33 0 2 0 0 3 2 1111 33333333333333 444 0000 0 111111 9 0 3 5555555 0 2222222222222222222222222222222222222222222222222222222222222222 22 2 1 888 7 0000 9 88888 1 0 2 0 0 666666666 7 1 0 0 33 3 99 8 8 4444 6 5 77 8888888 77 2222 2 55 00 7 111 6 8888888 666666 55555555555 5 5 5 55555555555555 1 55 0 1 1 9999999999999999999 5 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 3 5 777777777777777777 77 5 2 3 2
lowQualScore : .. . . . . . . . . . ....... . .. .. .. . ..... . . ........... . . . . . . . . ... ............... . . . ..... . .. . . .. ...... . . . . .. .. . ........... . . ... .................................................. ....... . . .... . . ........ ....... . . .. . . . . . . .... .............. ... .... . ...... . . . ....... . ................................................................ .. . . ... . .... . ..... . . . . . ......... . . . . .. . .. . . .... . . .. ....... .. .... . .. .. . ... . ....... ...... ........... . . . .............. . .. . . . ................... . . ............................................................................................................ . . . .................. .. . . . .
lowQualScore : 22 2 0 0 0 0 0 6 0 0 5555555 0 11 55 66 0 77777 0 0 00000000000 0 0 8 0 0 0 0 0 111 000000000000000 2 1 0 44444 7 99 4 7 77 444444 4 4 7 7 33 77 7 77777777777 7 7 555 44444444444444444444444444444444444444444444444444 0000000 0 0 6666 8 8 22222222 0000000 8 0 66 6 5 0 0 2 0 2222 00000000000000 888 8888 0 888888 0 0 2 0000000 0 3333333333333333333333333333333333333333333333333333333333333333 77 0 0 333 3 7777 0 00000 0 0 5 0 0 555555555 0 2 0 0 22 2 88 0 0 0000 0 7 99 6666666 99 1111 5 55 33 5 777 7 6666666 444444 33333333333 7 7 7 11111111111111 4 77 0 0 0 3333333333333333333 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 555555555555555555 55 5 5 0 5
consensus : CAGACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCC-CC-CA-CTG-NA-TTGTAC--G-NAT---ATAAA-CGAAAT-A-TCAAAC-TTTA-TA-----ACAGA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TGA---CGTG-------ACTAT-TTATTATGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-T-ATGATTCG--A-TTGTTTGC-GGATT---TA-TGACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGAAAGGAGGTGCACCCCATTGAACG--GTAGACTTGAAA---TGTTTTACCGATTACTTACNTTCC-CCCCNT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATAATG-TT-ACG-TTAATTCGACATGCCCG-AAGTTAC-AAA-TCA--C-TGGATTTGT-CACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGAAATAA---A-TTTAA-------TAGTATAC------ATGGAGATTTACCACC--C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGA--C--AT-----A-TTTATTACGTCCCC--CATCAGT-AGGGGCC-GGA-T-TGTCGAAGGGG-GGGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGANCAGGTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAAATACAGTGGCGGNTTTGNAGGGGGNAGGGGG
Reference ( family-382 ) : CAAACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCC-CC-C--CTG-NA-TTGTAC--G-NA----ATAAA-CGAAAT-A-TCAAAC-TCTA-TA-----ACAAA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCGC-CAGGCTGCAA--TGN---CGTG-------ACTAT-TTATTACGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCGGT----GGAGATGA----AA-----A--TG-T-ATGATTCG--A-TTGTTTGC-GGATT---TA-TGACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGGAAGGAGGTGCACCCCATTNAACGCGGTAGACTTGAAA---TGTTTTGCCGATTACTTACNNTNC-CCCCCT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCAAAATAATG-TT-ACG-TTAATTCGACATGCCCG-AAGTTAC-AAA-TCA--C-TGGATTTGT-CACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGAAATAA---A-TTTAA-------TAGTATAC------ATGGAGATTTACCACC--C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGA--C--AT-----A-TTTATTACGTCCCC--CATCAGT-ANGGACC-------TGTCGAAGCGGTGGGGGGTGGGGT-GGGTCCGTTGAAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGAACAGGTGATCAATA------------------CTCGT--GTCCCAAAATACAGTGGCGGCTTTGTAGGGGGGAAGGGG
gi|1 : CAGACGACAA-ACAAAT-TGC-A-GGGA-CGGAATCCAGGAATGTT-T-GAAA-------GGG-ATG-TCTA--CA--TT-TTGA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AATGAA-AGGA---------------GGGTGGGGTGGG----TCCG--ACTCCCTAGCCCCCCCCCCCCTTCCTCTGGATCT-CC-C--CTG-TA-TTGTAT--G-TA----ATAAA-CAAAAT-A-TCAAAT-T--A-TA-----ACAGAGAAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TGA---CGTA-------ACTAT-TTATTATGTTCCCCCACAT-AAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-C-ATGATTCG--A-TTGTTTGC-GGATT---T--TGA-AATGC-AATTT-------AAATTTT-ACATTTTGCA-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNCACA-AAAGAAGGTGCACCCCACTGAAC---GTAGACTTGAAA------TTTACTTATTGCGTACTTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATGATG-TT-ACG-TTAATTCGATATGCCCG-AAGTTAC-AAA-TCA--C-TGGATTTGT-CACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGATATAA---A-TTTAA-------TAGTATAC------ATGGAGATTTACCACCA-C-CCAC-CCCCGAACGCAGACTGCAATGTCGCGA--C--AC-----A-TTTATTACGTCCCC--CATCAGT-AGGGGCCAGAATT-TGTCAAAGGGGTGGGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGA-TAACGACCA-GTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCC-AAATACAGTGGCGGATTTAGAGGGGGCAGGGAG
gi|10 : CAAACGACACTGCAAATCTGC-AAGGGG-CCGA-TCCAGGAAT-TT-T-GAA---------GG-GT--TCTAAGCACTTT-TTGA-CAA-TGTT-----------ATTTAAG-C-GA-TTA-T-T-TTAAACGAA-A--G---------------CGGCGGGGcc
gi|11 : caATCACTTACCTTTC-CCCCAT-ATACATTCGTGAACCTTTTT-CAAAGC--AA----GTT-TAATAATG-CT-ACG-----TTCGATATGCCCG--AGTTAC-AAA-TCA--A-ACGTTTTGT-CACA--A-------ATAT--ATCA----AAtccttaaggtcaatccctat
gi|12 : t-TCTA--CA--TT-TTTA-C-A-T-TT-----------ATAT-AG-CAAA-ATA-T-T-TT-AACGAA-GGGG---------------GAG-GGGGAGA-------CA--A-CCCCTAGA-TCCCCCCG------GGTGGATCCGCC-A--CTG-AA-TTGTAC--A-GAT---TTAAA-C-AAAT-A-
gi|13 : A-------TAGTATAA------AT--AAATTT--------C-CTGC-CC--GAACGTTGGCTGCAATGTCGTGA--C--CT-----A-TTTATGACGTTCCTCACATCAGTGAAGGATCCAGAATTTGTCGAAAGGGAGAGGGG
gi|14 : T-TACA--A-------ATCA--ATCA----AACATTATA-TA---AGAAATAA---A-TGCAA-------TAGTATAT------ATGGAAA--TACTCTC--C-CCA----CCGAACGTAGGTTACAATG--GCG-------T-----A-T------CCCCCCC--CATCAGT-
gi|15 : tAAACGACAG-A-AAAT-TTC-A-AGGG-TGGA-TCAAATGATTTT-T-GAAA-------TGG-GTT-TCTA--CA--TTATTC--------TT-----------ATTT-AG-C-AA-TTGTT-T-TT-CATGAA-A--G---------------GGGTGGGGg
gi|16 : A-ACAAAT-TGC-A-GGGG-TGGA-TCCATGAA-GTT-TCTAAA-------GGG-GT------------------------T-CT-----------ATTT-A--CAAA-TTA-T-T-TT-TACTAA-GGGG---------------GGGattg
gi|17 : cCAGACGACAC--CAACT-TGC-A-GGGT-CGTA-TAAAGGAATGTT-T-GAGA-------GGGAGTG-TCTA--CA--Tg
gi|18 : caGACGA-ACAA-T-TGCTA-GGGA-CGGA-TCCAGGAATGTTGT-GAAA--------GG-ATG-TC
gi|2 : acaT----C--TCTGCTTCGAGCAC--AGGCTGCAAATTGA---C-TA-------CCTAT-TTATT-TGT-CCCCCACATTGAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AATGTAAA--TG-T-TTGATTCG--C-TTGTTTGC-GGATC---TAATGATAATGC-AATTTTTAAAAAAAATTTTTCCATTTTGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAACACAGAAAG-AGGTGCACCCCATTGAACG---TAGACT-GAAA---TGTTTTACCGATTACTTCCGCCCCGCCCCCTGATAAATTCGTGCAATCTCTTGCAAAG---AGCGTAGCCAAAATTATGGTTGACGATTAATTCGAC-TGCCCGCGAGTTAC-AAAATTA--C-TGGATTTGTTCACA--ATACCGTGGTAT--ATCA----GA-ATTT--ATCG-CAGA--TAA---A-TCTAA-------TAGTATACTAGTACATGGCGATT-ACCACT--CACCACGCCCCGAACGCAGACTGCAATGCCGCGA--CAAAT-----A-TTTATTACGTCCCC--
gi|2 : aGGTAAAGATTAACGAACAGGTGATCAATA------------------CTCGT--GTCCCAAAATACAGTGGCGGCTTTGTAGGGGGGAAGGGGacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtaaagattaacgaacaggtgatcaatactcgtgtcccaaaatacagtggcggctttgtaggggggaaggggggc
gi|3 : atctctgcttcgagcacaggctgcaaattgactacctatttatttgtcccccacattgaatatggactgtcaaagcagtggagatgaaatgtaaatgtttgattcgcttgtttgcggatctaatgataatgcaatttttaaaaaaaatttttccattttgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaaacacagaaagaggtgcaccccattgaacgtagactgaaatgttttaccgattacttccgccccgccccctgataaattcgtgcaatctcttgcaaagagcgtagccaaaattatggttgacgattaattcgactgcccgcgagttacaaaattactggatttgttcacaataccgtggtatatcagaatttatcgcagataaatctaatagtatactagtacatggcgattaccactcaccacgccccgaacgcagactgcaatgccgcgacaaatatttattacgtccccacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGACGACAA--CAAAT-TGC-A-GGGAACAGA-TCCAGGAATGTT-T-GAAA-------GGA-GTG-TCTA--CAT-TT-TTGA-C-A-T-TT-----------ATTT-AG-CAAA-AT--T-T-TT-AATGAA-CAGG---------------GGGTGGGGTGGG----TCCG--A-CCCCTAGACCCACCTCC------TCTGGATCC-CC-CA-CTG-TA--TGTAT--GTTT----ATAAA-C-AAATAA-TCAAAC-T---------------A-ATAA-----------------T--------TT----C--TCT-CTTCGAGCA--CAGGCTGC-A--TGA---CGTG-------ACC-T-TTATTATGT--CCCCACAT-GAG-TATGGACTGTCAAAGCAGTGCCAGGAGATGAAATTAA-----A--TGTT-ATGATTCGAAA-TTGTTTGT-GGATT---TA-TGA-AATGC-AATTTTA---AAAAATTTT-ACATTTTGCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNCACAGAAAGGAGGTGCACCCCATTCAATGCGGTAGACTTGAAATGTTGTTTTTCCGATTACT----ATAC-TCCCCT-ATACATTCGTGCACCCACTT-CAAAGTCAAG----GCCAAAATAATG-TT-ACG-TTAATTCGACATGCCCGAAAGTTACAAAA-TTA--CTTGGATTTGT-CACA--A-------ATAT--ATCA----ACCATTTT-ATAG-CGG--ATAA---A-TTTAATAGATACTAGTACAC------ATGGCGA-TTACCACTCAC-CCAC-CCCAGAACGCAGCCTGCAATGCCGCGA--C--AT-----ATTTTAATATGACCCA--CAggc
gi|4 : aA--TT-TTAA---A-T-TT-----------ATTT-AGGCAAA-TTG-T-TATT-AACGGG-GGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGTGGGGGAC----TTGAAATCCTCCT------TCTGGATCG-TCGC--CTG-GAATTGTACTAG-GAT---ATAAA-CGCAAT-AGTAAAAC-TTCT-TAGTGACACAAA-AAAACAGGTAGGCAGCATAGAT---TGAA-TTACCGC--TCT-TTT---GCTCTCAGGC-ACAG--CGTTTGCGTGTTTATGAGCCAT-TTATTATGTTCTAT-ACAT-AAAATATGGCTTG---AAGCGGT----AGTGATGA----AA-----AAGTG-TAATAATTTG--ACCTGTTTACAGGATTGACTATTGGCAATGCTAA--TT----ATAAGTTTT-ACATTTTG
gi|5 : ACGACCG--CAAAT-TCC-A-GGGG-CGGA-TCCAGGAATTTT-T-GAAACGGGGGGGGG-GT--TCTA--CT--TT-TTTA-C-A-T-TT-----------ATTT-AA-CAAA-TTA-TCT-TT-AACGAA-AAG-------------------------GGG----TCCG--ACCCC---G---------C------TCGGG--CC-CG-CAACTG-AA-TTGTAA--A-AA----AAAAACCGAAAT---TCAAACTTTTACTA-----ACAGA-AATA-----------------TATAT-AAGTT----CCATCT-CTT-GAACGC-AAGACTGTAA--AGA---CGTG-------A-TATATTATTAC-TTCacttcgcttgcctatactgcaaca
gi|6 : ACGACAA-ACAAAT-TGC-A-GGGA-CAGA-TC-AGGAATGTT-T-GAAA-------GGA-GTGGTCCT--CA--TT-TTGAAC-A-T-TTTACATAATCGTATTTTAG-CAAAATTA-TAT-TC-AATGAATAGGG---------------GGGTGG--TGGG----TCCG--ACCCCCTAGACCCCCCTCC------TCTGGATCC-CC-CA-CTGTAA-TTGTAA--G-TATACTAGAAA-C-AAAT-A-TCAAA---CTA-TA-----ACA
gi|7 : agcTGTCCG-AAGTTAA-ATG-TCATAC-TGT-TCTGT-GATGGTA-------ACATTCGTCAGTTGAAAGTTTTGGTAAACACAAATAACATACTTTAA-------TAGTGTAC------ATGGAGATGGA-CACC--C-CAAC-CCCC-AAC-CAGGCTGCAATGTCGTGAATC--ATGGCCAA-TTTATCACGTCCCC--C
gi|8 : CAAAAGACAA-ACAA-T-TGC-A-GGTG-CGGA-TCCAGGAATATT-T-GAAAAAGG---GGG-GGG-GCTA--TA--TT-TTCA-C-ATT-TT-----------ATTT-AG-CAAA-TCA-T-T-TT-TTCAAA-AGGT---------------GGG-GGAGAGA--------G--A-CCTCTAGACCACCCCCC------CC-----CC-CC-C--C
gi|9 : GGTTTGT-CACA--A-------ATAT--ATCA----TACATTTT-ATAA-CATAAATTT---A-TTT---------TAGTATAC------ATGGAAAT-----ACC--C-CCTC-CCCCGAACGTAGGTTACAAT------A--C-------------TGTTACGTCCCCAACATCGAG-GGGGGCC--------------------GGGGGT-GGGT-GGGTCCGTTGAAAGAGcccccccccccccacgtgtggaatag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGTCCGAAGTTAAATGTCATACTGTTC
Alignments
lowQualScore : 11 2222222 11 11111111111 222222222222222 11111 1 111111 111111111111 1 111 9999999999999999999999999999999999999999999999999 1111111 1 11 1111111 2222222 1 1 1 2222 33333333333333 1111 11111 1 22222222222 1 33333 1 9999999999999999999999999999999999999999999999999999999999999999 1 11 2 222 1 11 1 1 1 222222222 1 1 11 11 1111 1111111 1111 11 11 111 1111111 111111 22222222222 22222222222222 55555555555555 2222 1 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1 666666666666666666 11 1
lowQualScore : 11 3 4 4 4 4 4 1 4 4 1111111 4 11 55 88 4 88888 4 4 99999999999 8 4 0 4 4 8 4 4 555 555555555555555 6 0 3 66666 0 77 1 0 55 666666 5 3 77 6 222222222222 7 222 9999999999999999999999999999999999999999999999999 8888888 8 0 33 0 0 4444444 6666666 0 8 0 5 2 0 0 3 1111 33333333333333 2222 55555 0 66666666666 0 44444 3 0 5555555555555555555555555555555555555555555555555555555555555555 6 2 88 3 7 333 6 0 11 0 2 4 0 0 666666666 77 1 0 0 33 3 99 8 8 4444 6 5 77 8888888 77 2222 2 55 00 7 111 6 8888888 666666 55555555555 5 5 5 55555555555555 1 77 3 2 99999999999999 7777 5 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000 5 1 5 444444444444444444 88 5 1 1 1
lowQualScore : .. . . . . . . . . . ....... . .. .. .. . ..... . . ........... . . . . . . . . ... ............... . . . ..... . .. . . .. ...... . . .. . ............ . ... ................................................. ....... . . .. . . ....... ....... . . . . . . . . .... .............. .... ..... . ........... . ..... . . ................................................................ . . .. . . ... . . .. . . . . . ......... .. . . . .. . .. . . .... . . .. ....... .. .... . .. .. . ... . ....... ...... ........... . . . .............. . .. . . .............. .... . . ................................................................................ . . . .................. .. . . . .
lowQualScore : 22 2 0 0 0 0 0 6 0 0 5555555 0 11 55 66 0 77777 0 0 00000000000 0 0 8 0 0 0 0 0 111 000000000000000 2 1 0 44444 7 99 4 7 77 444444 0 2 77 7 888888888888 7 555 2222222222222222222222222222222222222222222222222 0000000 0 0 00 8 8 2222222 0000000 8 0 8 5 5 0 0 2 2222 00000000000000 2222 55555 0 55555555555 0 55555 2 0 7777777777777777777777777777777777777777777777777777777777777777 7 0 33 3 3 333 7 0 55 0 5 5 0 0 555555555 55 2 0 0 22 2 88 0 0 0000 0 7 99 6666666 99 1111 5 55 33 5 777 7 6666666 444444 33333333333 7 7 7 11111111111111 4 99 2 5 44444444444444 0000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 000000000000000000 55 5 0 0 0
consensus : CAGACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCCCCCACTG-NA-TTGTAC--GNATAT---AAACGAAAT-A-TCAAAC-TTTA-TA-----ACAGA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTG-------ACTAT-TTATTATGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-TA-TGATTCG--AT-TGTTTGC-GGATT---TA-T-GACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGAAAGGAGGTGCACCCCATTGAA--CG-TAGACTTGAAA---TGTTTTACCGATTACT-TACNTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATAATG-TT-ACG-TTAATTCGACATGCCCG-AAGTTAC-AAA-TCA--C-TGGATTTGT-CACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGAAATAA---A-TTTAA-------TAGTATAC------ATGGAGATTTACCACC--C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGA--C--AT-----A-TTTATTACGTCCCC--CATCAGT--AGGG-CCAGAATTTGTCGAAGGGG-G--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGANCAGGTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAAATACAGTGGCGGNTTTGNAGGGGGNAGGGGG
Reference ( family-382 ) : CAGACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCCCCCACTG-NA-TTGTAC--GNATAT---AAACGAAAT-A-TCAAAC-TTTA-TA-----ACAGA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTG-------ACTAT-TTATTATGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-TA-TGATTCG--AT-TGTTTGC-GGATT---TA-T-GACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGAAAGGAGGTGCACCCCATTGAA--CGGTAGACTTGAAA---TGTTTTACCGATTACT-TACNTTCC-CCCCNT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATAATG-TT-ACG-TTAATTCGACATGCCCG-AAGTTAC-AAA-TCA--C-TGGATTTGT-CACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGAAATAA---A-TTTAA-------TAGTATAC------ATGGAGATTTACCACC--C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGA--C--AT-----A-TTTATTACGTCCCC--CATCAGT--AGGGGCCGGA--TTGTCGAAGGGG-G--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGANCAGGTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAAATACAGTGGCGGNTTTGNAGGGGGNAGGGGG
gi|1 : CAGACGACAA-ACAAAT-TGC-A-GGGA-CGGAATCCAGGAATGTT-T-GAAA-------GGG-ATG-TCTA--CA--TT-TTGA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AATGAA-AGGA---------------GGGTGGGGTGGG----TCCG--ACTCCCTAGCCCCCCCCCCCCTTCCTCTGGATCTCCC-CTG-TA-TTGTAT--GTA-AT---AAACAAAAT-A-TCAAA---TTA-TA-----ACAGAGAAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTA-------ACTAT-TTATTATGTTCCCCCACAT-AAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-CA-TGATTCG--AT-TGTTTGC-GGATT---T--T-GA-AATGC-AATTT-------AAATTTT-ACATTTTGCA-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNCACA-AAAGAAGGTGCACCCCACTGAA--CG-TAGACTTGAAA---T---TTACTTATTGCG-TACTTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATGATG-TT-ACG-TTAATTCGATATGCCCG-AAGTTAC-AAA-TCA--C-TGGATTTGT-CACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGATATAA---A-TTTAA-------TAGTATAC------ATGGAGATTTACCACCA-C-CCAC-CCCCGAACGCAGACTGCAATGTCGCGA--C--AC-----A-TTTATTACGTCCCC--CATCAGT--AGGGGCCAGAATTTGTCAAAGGGGTG--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGA-TAACGACCA-GTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCC-AAATACAGTGGCGGATTTAGAGGGGGCAGGGAG
gi|10 : CAAACGACACTGCAAATCTGC-AAGGGG-CCGA-TCCAGGAAT-TT-T-GAA---------GG-GT--TCTAAGCACTTT-TTGA-CAA-TGTT-----------ATTTAAG-C-GA-TTA-T-T-TTAAACGAA-A--G---------------CGGCGGGGcc
gi|11 : caATCACT-TACCTTTC-CCCCAT-ATACATTCGTGAACCTTTTT-CAAAGC--AA----GTTT-AATAATG-CT-ACG-----TTCGATATGCCCG--AGTTAC-AAA-TCA--A-ACGTTTTGT-CACA--A-------ATAT--ATCA----AAtccttaaggtcaatccctat
gi|12 : t-TCTA--CA--TT-TTTA-C-A-T-TT-----------ATAT-AG-CAAA-ATA-T-T-TT-AACGAA-GGGG---------------GAG-GGGGAGA-------CA--A-CCCCTAGA-TCCCCCCG------GGTGGATCCGCCACTG-AA-TTGTAC--AGATTT---AAAC-AAAT-A-
gi|13 : A-------TAGTATAA------AT--AAATTT--------C-CTGC-CC--GAACGTTGGCTGCAATGTCGTGA--C--CT-----A-TTTATGACGTTCCTCACATCAGTGAAGGATCCAGAATTTGTCGAAAGGG-A--GAGGG
gi|14 : T-TACA--A-------ATCA--ATCA----AACATTATA-TA---AGAAATAA---A-TGCAA-------TAGTATAT------ATGGAAA--TACTCTC--C-CCA----CCGAACGTAGGTTACAATG--GCG-------T-----A-T------CCCCCCC--CATCAGT--g
gi|15 : tAAACGACAG-A-AAAT-TTC-A-AGGG-TGGA-TCAAATGATTTT-T-GAAA-------TGG-GTT-TCTA--CA--TTATTC--------TT-----------ATTT-AG-C-AA-TTGTT-T-TT-CATGAA-A--G---------------GGGTGGGGg
gi|16 : A-ACAAAT-TGC-A-GGGG-TGGA-TCCATGAA-GTT-TCTAAA-------GGG-GT------------------------T-CT-----------ATTT-A--CAAA-TTA-T-T-TT-TACTAA-GGGG---------------GGGattg
gi|17 : cCAGACGACAC--CAACT-TGC-A-GGGT-CGTA-TAAAGGAATGTT-T-GAGA-------GGGAGTG-TCTA--CA--Tg
gi|18 : caGACGA-ACAA-T-TGCTA-GGGA-CGGA-TCCAGGAATGTTGT-GAAA--------GG-ATG-TC
gi|2 : acaT----C--TCTGCTTCGAGCAC--AGGCTGCAAATTG---AC-TA-------CCTAT-TTATT-TGT-CCCCCACATTGAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AATGTAAA--TG-TT-TGATTCG--CT-TGTTTGC-GGATC---TAAT-GATAATGC-AATTTTTAAAAAAAATTTTTCCATTTTGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAACACAGAAAG-AGGTGCACCCCATTGAA--CG-TAGACT-GAAA---TGTTTTACCGATTACT-TCCGCCCCGCCCCCTGATAAATTCGTGCAATCTCTTGCAAAG---AGCGTAGCCAAAATTATGGTTGACGATTAATTCGAC-TGCCCGCGAGTTAC-AAAATTA--C-TGGATTTGTTCACA--ATACCGTGGTAT--ATCA----GA-ATTT--ATCG-CAGA--TAA---A-TCTAA-------TAGTATACTAGTACATGGCGATT-ACCACT--CACCACGCCCCGAACGCAGACTGCAATGCCGCGA--CAAAT-----A-TTTATTACGTCCCC--
gi|2 : aGGTAAAGATTAACGAACAGGTGATCAATA------------------CTCGT--GTCCCAAAATACAGTGGCGGCTTTGTAGGGGGGAAGGGGacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtaaagattaacgaacaggtgatcaatactcgtgtcccaaaatacagtggcggctttgtaggggggaaggggggc
gi|3 : atctctgcttcgagcacaggctgcaaattgactacctatttatttgtcccccacattgaatatggactgtcaaagcagtggagatgaaatgtaaatgtttgattcgcttgtttgcggatctaatgataatgcaatttttaaaaaaaatttttccattttgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaaacacagaaagaggtgcaccccattgaacgtagactgaaatgttttaccgattacttccgccccgccccctgataaattcgtgcaatctcttgcaaagagcgtagccaaaattatggttgacgattaattcgactgcccgcgagttacaaaattactggatttgttcacaataccgtggtatatcagaatttatcgcagataaatctaatagtatactagtacatggcgattaccactcaccacgccccgaacgcagactgcaatgccgcgacaaatatttattacgtccccacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGACGACAA--CAAAT-TGC-A-GGGAACAGA-TCCAGGAATGTT-T-GAAA-------GGA-GTG-TCTA--CAT-TT-TTGA-C-A-T-TT-----------ATTT-AG-CAAA-AT--T-T-TT-AATGAA-CAGG---------------GGGTGGGGTGGG----TCCG--A-CCCCTAGACCCACCTCC------TCTGGATCCCCCACTG-TA--TGTAT--GTTTAT---AAAC-AAATAA-TCAAAC-T---------------A-ATAA-----------------T--------TT----C--TCT-CTTCGAGCA--CAGGCTGC-A--TG---ACGTG-------ACC-T-TTATTATGT--CCCCACAT-GAG-TATGGACTGTCAAAGCAGTGCCAGGAGATGAAATTAA-----A--TGTTA-TGATTCGAAAT-TGTTTGT-GGATT---TA-T-GA-AATGC-AATTTTA---AAAAATTTT-ACATTTTGCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNCACAGAAAGGAGGTGCACCCCATTCAATGCGGTAGACTTGAAATGTTGTTTTTCCGATTACTATAC--TCC-CC---T-ATACATTCGTGCACCCACTT-CAAAGTCAAG----GCCAAAATAATG-TT-ACG-TTAATTCGACATGCCCGAAAGTTACAAAA-TTA--CTTGGATTTGT-CACA--A-------ATAT--ATCA----ACCATTTT-ATAG-CGG--ATAA---A-TTTAATAGATACTAGTACAC------ATGGCGA-TTACCACTCAC-CCAC-CCCAGAACGCAGCCTGCAATGCCGCGA--C--AT-----ATTTTAATATGACCCA--CAggc
gi|4 : aA--TT-TTAA---A-T-TT-----------ATTT-AGGCAAA-TTG-T-TATT-AACGGG-GGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGTGGGGGAC----TTGAAATCCTCCT------TCTGGATCGTCGCCTG-GAATTGTACTAGGATAT---AAACGCAAT-AGTAAAAC-TTCT-TAGTGACACAAA-AAAACAGGTAGGCAGCATAGAT---TGAA-TTACCGC--TCT-TTT---GCTCTCAGGC-ACAG--CGTTTGCGTGTTTATGAGCCAT-TTATTATGTTCTAT-ACAT-AAAATATGGCTTG---AAGCGGT----AGTGATGA----AA-----AAGTG-TAATAATTTG--ACCTGTTTACAGGATTGACTA-TTGGCAATGCTAATTAT----AAG--TTTT-ACATTTTG
gi|5 : ACGACCG--CAAAT-TCC-A-GGGG-CGGA-TCCAGGAATTTT-T-GAAACGGGGGGGGG-GT--TCTA--CT--TT-TTTA-C-A-T-TT-----------ATTT-AA-CAAA-TTA-TCT-TT-AACGAA-AAG-------------------------GGG----TCCG--ACCCC---G---------C------TC-GGGCCCGCAACTG-AA-TTGTAA--AAAAAA---AACCGAAAT---TCAAACTTTTACTA-----ACAGA-AATA-----------------TATAT-AAGTT----CCATCT-CTT-GAACGC-AAGACTGTAA--AG---ACGTG-------A-TATATTATTAacttcgcttgcctatactgcaaca
gi|6 : ACGACAA-ACAAAT-TGC-A-GGGA-CAGA-TC-AGGAATGTT-T-GAAA-------GGA-GTGGTCCT--CA--TT-TTGAAC-A-T-TTTACATAATCGTATTTTAG-CAAAATTA-TAT-TC-AATGAATAGGG---------------GGGTGG--TGGG----TCCG--ACCCCCTAGACCCCCCTCC------TCTGGATCCCCCACTGTAA-TTGTAA--GTATACTAGAAAC-AAAT-A-TCAAAC---TA-TA-----ACActtc
gi|7 : agcTGTCCG-AAGTTAA-ATG-TCATAC-TGT-TCTGT-GATGGTA-------ACATTCGTCAGTTGAAAGTTTTGGTAAACACAAATAACATACTTTAA-------TAGTGTAC------ATGGAGATGGA-CACC--C-CAAC-CCCC-AAC-CAGGCTGCAATGTCGTGAATC--ATGGCCAA-TTTATCACGTCCCC--C
gi|8 : CAAAAGACAA-ACAA-T-TGC-A-GGTG-CGGA-TCCAGGAATATT-T-GAAAAAGG---GGG-GGG-GCTA--TA--TT-TTCA-C-ATT-TT-----------ATTT-AG-CAAA-TCA-T-T-TT-TTCAAA-AGGT---------------GGG-GGAGAGA--------G--A-CCTCTAGACCACCCCCC------CC-----CCCCC
gi|9 : GGTTTGT-CACA--A-------ATAT--ATCA----TACATTTT-ATAA-CATAAATTT---A-TTT---------TAGTATAC------ATGGAAAT-----ACC--C-CCTC-CCCCGAACGTAGGTTACAAT------A--C-------------TGTTACGTCCCC--AA-CA-------------------TCGAGGGGG-GCCGGGGGT-GGGT-GGGTCCGTTGAAAGAGccccccccccccccacgtgtggaatag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGTCCGAAGTTAAATGTCATACTGTTC
Alignments
lowQualScore : 11 2222222 11 11111111111 222222222222222 11111 1 111111 111111111111 1 111 9999999999999999999999999999999999999999999999999 1111111 1 11 1111111 2222222 1 1 1 2222 33333333333333 1111 11111 1 22222222222 1 33333 1 9999999999999999999999999999999999999999999999999999999999999999 1 222 222 1 11 1 1 1 222222222 1 1 11 11 1 1111 1111111 1111 11 11 11 111 1111111 111111 22222222222 22222222222222 44444444 2222 1 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1 666666666666666666 11 1
lowQualScore : 11 3 4 4 4 4 4 1 4 4 1111111 4 11 55 88 4 88888 4 4 99999999999 8 4 0 4 4 8 4 4 555 555555555555555 6 0 3 66666 0 77 1 0 55 666666 5 3 77 6 222222222222 7 222 9999999999999999999999999999999999999999999999999 8888888 8 0 33 0 0 4444444 6666666 0 8 0 5 2 0 0 3 1111 33333333333333 2222 55555 0 66666666666 0 44444 3 0 5555555555555555555555555555555555555555555555555555555555555555 6 2 333 7 333 6 0 11 0 2 3 0 0 666666666 77 1 0 0 33 3 99 6 4444 6 5 77 8888888 77 2222 2 55 00 00 111 6 8888888 666666 55555555555 5 5 5 55555555555555 1 77 3 2 11111111 7777 5 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000 5 1 5 444444444444444444 88 5 1 1 1
lowQualScore : .. . . . . . . . . . ....... . .. .. .. . ..... . . ........... . . . . . . . . ... ............... . . . ..... . .. . . .. ...... . . .. . ............ . ... ................................................. ....... . . .. . . ....... ....... . . . . . . . . .... .............. .... ..... . ........... . ..... . . ................................................................ . . ... . ... . . .. . . . . . ......... .. . . . .. . .. . .... . . .. ....... .. .... . .. .. .. ... . ....... ...... ........... . . . .............. . .. . . ........ .... . . ................................................................................ . . . .................. .. . . . .
lowQualScore : 22 2 0 0 0 0 0 6 0 0 5555555 0 11 55 66 0 77777 0 0 00000000000 0 0 8 0 0 0 0 0 111 000000000000000 2 1 0 44444 7 99 4 7 77 444444 0 2 77 7 888888888888 7 555 2222222222222222222222222222222222222222222222222 0000000 0 0 00 8 8 2222222 0000000 8 0 8 5 5 0 0 2 2222 00000000000000 2222 55555 0 55555555555 0 55555 2 0 7777777777777777777777777777777777777777777777777777777777777777 7 0 333 3 333 7 0 55 0 5 0 0 0 555555555 55 2 0 0 22 2 88 0 0000 0 7 99 6666666 99 1111 5 55 33 77 777 7 6666666 444444 33333333333 7 7 7 11111111111111 4 99 2 5 00000000 0000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 000000000000000000 55 5 0 0 0
consensus : CAGACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCCCCCACTG-NA-TTGTAC--GNATAT---AAACGAAAT-A-TCAAAC-TTTA-TA-----ACAGA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTG-------ACTAT-TTATTATGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-TA-TGATTCG--AT-TGTTTGC-GGATT---TA-T-GACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGAAAGGAGGTGCACCCCATTGAAC---GTAGACTTGAAA---TGTTTTACCGATTACT-TACNTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATAAT-GTT-ACG-TTAATTCGACATGCCCG-AAGTTACAAAATCA--C-TGGATTTG-TCACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGAAATAA---A-TTTAA-------TAGTA------TACATGGAGATTTACCACC--C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGA--C--AT-----A-TTTATTACGTCCCC--CATCAGT-A-GGG--CCAGAATTTGTCGAAGGGG-G--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGANCAGGTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAAATACAGTGGCGGNTTTGNAGGGGGNAGGGGG
Reference ( family-382 ) : CAGACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCCCCCACTG-NA-TTGTAC--GNATAT---AAACGAAAT-A-TCAAAC-TTTA-TA-----ACAGA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTG-------ACTAT-TTATTATGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-TA-TGATTCG--AT-TGTTTGC-GGATT---TA-T-GACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGAAAGGAGGTGCACCCCATTGAAC---GTAGACTTGAAA---TGTTTTACCGATTACT-TACNTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATAAT-GTT-ACG-TTAATTCGACATGCCCG-AAGTTAC-AAATCA--C-TGGATTTG-TCACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGAAATAA---A-TTTAA-------TAGTA------TACATGGAGATTTACCACC--C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGA--C--AT-----A-TTTATTACGTCCCC--CATCAGT-A-GGG--CCAGAATTTGTCGAAGGGG-G--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGANCAGGTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAAATACAGTGGCGGNTTTGNAGGGGGNAGGGGG
gi|1 : CAGACGACAA-ACAAAT-TGC-A-GGGA-CGGAATCCAGGAATGTT-T-GAAA-------GGG-ATG-TCTA--CA--TT-TTGA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AATGAA-AGGA---------------GGGTGGGGTGGG----TCCG--ACTCCCTAGCCCCCCCCCCCCTTCCTCTGGATCTCCC-CTG-TA-TTGTAT--GTA-AT---AAACAAAAT-A-TCAAA---TTA-TA-----ACAGAGAAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTA-------ACTAT-TTATTATGTTCCCCCACAT-AAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-CA-TGATTCG--AT-TGTTTGC-GGATT---T--T-GA-AATGC-AATTT-------AAATTTT-ACATTTTGCA-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNCACA-AAAGAAGGTGCACCCCACTGAAC---GTAGACTTGAAA---T---TTACTTATTGCG-TACTTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATGAT-GTT-ACG-TTAATTCGATATGCCCG-AAGTTAC-AAATCA--C-TGGATTTG-TCACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGATATAA---A-TTTAA-------TAGTA------TACATGGAGATTTACCACCA-C-CCAC-CCCCGAACGCAGACTGCAATGTCGCGA--C--AC-----A-TTTATTACGTCCCC--CATCAGT-AGGGG--CCAGAATTTGTCAAAGGGGTG--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGA-TAACGACCA-GTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCC-AAATACAGTGGCGGATTTAGAGGGGGCAGGGAG
gi|10 : CAAACGACACTGCAAATCTGC-AAGGGG-CCGA-TCCAGGAAT-TT-T-GAA---------GG-GT--TCTAAGCACTTT-TTGA-CAA-TGTT-----------ATTTAAG-C-GA-TTA-T-T-TTAAACGAA-A--G---------------CGGCGGGGcc
gi|11 : caATCACT-TACCTTTC-CCCCAT-ATACATTCGTGAACCTTTTT-CAAAGC--AA----GTTT-AATAAT-GCT-ACG-----TTCGATATGCCCG--AGTTAC-AAATCA--A-ACGTTTTG-TCACA--A-------ATAT--ATCA----AAtccttaaggtcaatccctat
gi|12 : t-TCTA--CA--TT-TTTA-C-A-T-TT-----------ATAT-AG-CAAA-ATA-T-T-TT-AACGAA-GGGG---------------GAG-GGGGAGA-------CA--A-CCCCTAGA-TCCCCCCG------GGTGGATCCGCCACTG-AA-TTGTAC--AGATTT---AAAC-AAAT-A-
gi|13 : A-------TAGTA------TAAAT--AAATTT--------C-CTGC-CC--GAACGTTGGCTGCAATGTCGTGA--C--CT-----A-TTTATGACGTTCCTCACATCAGTGA-AGGATCCAGAATTTGTCGAAAGGG-A--GAGGG
gi|14 : -TTACA--A-------ATCA--ATCA----AACATTATA-TA---AGAAATAA---A-TGCAA-------TAGTA------TATATGGAAA--TACTCTC--C-CCA----CCGAACGTAGGTTACAATG--GCG-------T-----A-T------CCCCCCC--CATCAGT-g
gi|15 : tAAACGACAG-A-AAAT-TTC-A-AGGG-TGGA-TCAAATGATTTT-T-GAAA-------TGG-GTT-TCTA--CA--TTATTC--------TT-----------ATTT-AG-C-AA-TTGTT-T-TT-CATGAA-A--G---------------GGGTGGGGg
gi|16 : A-ACAAAT-TGC-A-GGGG-TGGA-TCCATGAA-GTT-TCTAAA-------GGG-GT------------------------T-CT-----------ATTT-A--CAAA-TTA-T-T-TT-TACTAA-GGGG---------------GGGattg
gi|17 : cCAGACGACAC--CAACT-TGC-A-GGGT-CGTA-TAAAGGAATGTT-T-GAGA-------GGGAGTG-TCTA--CA--Tg
gi|18 : caGACGA-ACAA-T-TGCTA-GGGA-CGGA-TCCAGGAATGTTGT-GAAA--------GG-ATG-TC
gi|2 : acaT----C--TCTGCTTCGAGCAC--AGGCTGCAAATTG---AC-TA-------CCTAT-TTATT-TGT-CCCCCACATTGAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AATGTAAA--TG-TT-TGATTCG--CT-TGTTTGC-GGATC---TAAT-GATAATGC-AATTTTTAAAAAAAATTTTTCCATTTTGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAACACAGAAAG-AGGTGCACCCCATTGAAC---GTAGAC-TGAAA---TGTTTTACCGATTACT-TCCGCCCCGCCCCCTGATAAATTCGTGCAATCTCTTGCAAAG---AGCGTAGCCAAAATTATGGTTGACGATTAATTCGAC-TGCCCGCGAGTTACAAAATTA--C-TGGATTTGTTCACA--ATACCGTGGTAT--ATCA----GA-ATTT--ATCG-CAG--ATAA---A-TCTAA-------TAGTATACTAGTACATGGCGA-TTACCACT--CACCACGCCCCGAACGCAGACTGCAATGCCGCGA--CAAAT-----A-TTTATTACGTCCCC--
gi|2 : aGGTAAAGATTAACGAACAGGTGATCAATA------------------CTCGT--GTCCCAAAATACAGTGGCGGCTTTGTAGGGGGGAAGGGGacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtaaagattaacgaacaggtgatcaatactcgtgtcccaaaatacagtggcggctttgtaggggggaaggggggc
gi|3 : atctctgcttcgagcacaggctgcaaattgactacctatttatttgtcccccacattgaatatggactgtcaaagcagtggagatgaaatgtaaatgtttgattcgcttgtttgcggatctaatgataatgcaatttttaaaaaaaatttttccattttgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaaacacagaaagaggtgcaccccattgaacgtagactgaaatgttttaccgattacttccgccccgccccctgataaattcgtgcaatctcttgcaaagagcgtagccaaaattatggttgacgattaattcgactgcccgcgagttacaaaattactggatttgttcacaataccgtggtatatcagaatttatcgcagataaatctaatagtatactagtacatggcgattaccactcaccacgccccgaacgcagactgcaatgccgcgacaaatatttattacgtccccacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGACGACAA--CAAAT-TGC-A-GGGAACAGA-TCCAGGAATGTT-T-GAAA-------GGA-GTG-TCTA--CAT-TT-TTGA-C-A-T-TT-----------ATTT-AG-CAAA-AT--T-T-TT-AATGAA-CAGG---------------GGGTGGGGTGGG----TCCG--A-CCCCTAGACCCACCTCC------TCTGGATCCCCCACTG-TA--TGTAT--GTTTAT---AAAC-AAATAA-TCAAAC-T---------------A-ATAA-----------------T--------TT----C--TCT-CTTCGAGCA--CAGGCTGC-A--TG---ACGTG-------ACC-T-TTATTATGT--CCCCACAT-GAG-TATGGACTGTCAAAGCAGTGCCAGGAGATGAAATTAA-----A--TGTTA-TGATTCGAAAT-TGTTTGT-GGATT---TA-T-GA-AATGC-AATTTTA---AAAAATTTT-ACATTTTGCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNCACAGAAAGGAGGTGCACCCCATTCAATGCGGTAGACTTGAAATGTTGTTTTTCCGATTACTATAC--TCC-CC---T-ATACATTCGTGCACCCACTT-CAAAGTCAAG----GCCAAAATAAT-GTT-ACG-TTAATTCGACATGCCCGAAAGTTACAAAATTA--CTTGGATTTG-TCACA--A-------ATAT--ATCA----ACCATTTT-ATAG-CGG--ATAA---A-TTTAATAGATACTAGTA------CACATGGCGA-TTACCACTCAC-CCAC-CCCAGAACGCAGCCTGCAATGCCGCGA--C--AT-----ATTTTAATATGACCCA--CAggc
gi|4 : aA--TT-TTAA---A-T-TT-----------ATTT-AGGCAAA-TTG-T-TATT-AACGGG-GGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGTGGGGGAC----TTGAAATCCTCCT------TCTGGATCGTCGCCTG-GAATTGTACTAGGATAT---AAACGCAAT-AGTAAAAC-TTCT-TAGTGACACAAA-AAAACAGGTAGGCAGCATAGAT---TGAA-TTACCGC--TCT-TTT---GCTCTCAGGC-ACAG--CGTTTGCGTGTTTATGAGCCAT-TTATTATGTTCTAT-ACAT-AAAATATGGCTTG---AAGCGGT----AGTGATGA----AA-----AAGTG-TAATAATTTG--ACCTGTTTACAGGATTGACTA-TTGGCAATGCTAATTAT----AAG--TTTT-ACATTTTG
gi|5 : ACGACCG--CAAAT-TCC-A-GGGG-CGGA-TCCAGGAATTTT-T-GAAACGGGGGGGGG-GT--TCTA--CT--TT-TTTA-C-A-T-TT-----------ATTT-AA-CAAA-TTA-TCT-TT-AACGAA-AAG-------------------------GGG----TCCG--ACCCC---G---------C------TC-GGGCCCGCAACTG-AA-TTGTAA--AAAAAA---AACCGAAAT---TCAAACTTTTACTA-----ACAGA-AATA-----------------TATAT-AAGTT----CCATCT-CTT-GAACGC-AAGACTGTAA--AG---ACGTG-------A-TATATTATTAacttcgcttgcctatactgcaaca
gi|6 : ACGACAA-ACAAAT-TGC-A-GGGA-CAGA-TC-AGGAATGTT-T-GAAA-------GGA-GTGGTCCT--CA--TT-TTGAAC-A-T-TTTACATAATCGTATTTTAG-CAAAATTA-TAT-TC-AATGAATAGGG---------------GGGTGG--TGGG----TCCG--ACCCCCTAGACCCCCCTCC------TCTGGATCCCCCACTGTAA-TTGTAA--GTATACTAGAAAC-AAAT-A-TCAAAC---TA-TA-----ACActtc
gi|7 : agcTGTCCG-AAGTTAA-ATGTCATAC-TGT-TCTG-TGATGGTA-------ACATTCGTCAGTTGAAAGTTTTGGTAAACACAAATAACATACTTTAA-------TAGTG------TACATGGAGATGGA-CACC--C-CAAC-CCCC-AAC-CAGGCTGCAATGTCGTGAATC--ATGGCCAA-TTTATCACGTCCCC--C
gi|8 : CAAAAGACAA-ACAA-T-TGC-A-GGTG-CGGA-TCCAGGAATATT-T-GAAAAAGG---GGG-GGG-GCTA--TA--TT-TTCA-C-ATT-TT-----------ATTT-AG-CAAA-TCA-T-T-TT-TTCAAA-AGGT---------------GGG-GGAGAGA--------G--A-CCTCTAGACCACCCCCC------CC-----CCCCC
gi|9 : GGTTTG-TCACA--A-------ATAT--ATCA----TACATTTT-ATAA-CATAAATTT---A-TTT---------TAGTA------TACATGGAAAT-----ACC--C-CCTC-CCCCGAACGTAGGTTACAAT------A--C-------------TGTTACGTCCCC--AA-CA--------------------TCGAGGGGG-GCCGGGGGT-GGGT-GGGTCCGTTGAAAGAGccccccccccccccacgtgtggaatag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGTCCGAAGTTAAATGTCATACTGTTC
Alignments
lowQualScore : 11 2222222 11 11111111111 222222222222222 11111 1 111111 111111111111 1 111 9999999999999999999999999999999999999999999999999 1111111 1 11 1111111 2222222 1 1 1 2222 33333333333333 1111 11111 1 22222222222 1 33333 1 9999999999999999999999999999999999999999999999999999999999999999 1 222 222 1 11 1 1 1 222222222 1 1 11 11 1 1111 1111111 1111 11 11 11 111 1111111 111111 22222222222 22222222222222 44444444 2222 1 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1 666666666666666666 11 1
lowQualScore : 11 3 4 4 4 4 4 1 4 4 1111111 4 11 55 88 4 88888 4 4 99999999999 8 4 0 4 4 8 4 4 555 555555555555555 6 0 3 66666 0 77 1 0 55 666666 5 3 77 6 222222222222 7 222 9999999999999999999999999999999999999999999999999 8888888 8 0 33 0 0 4444444 6666666 0 8 0 5 2 0 0 3 1111 33333333333333 2222 55555 0 66666666666 0 44444 3 0 5555555555555555555555555555555555555555555555555555555555555555 6 2 333 7 333 6 0 11 0 2 3 0 0 666666666 77 1 0 0 33 3 99 0 4444 6 5 77 8888888 77 2222 2 55 00 00 111 6 8888888 666666 55555555555 5 5 5 55555555555555 1 77 3 2 11111111 7777 5 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000 5 1 5 444444444444444444 88 5 1 1 1
lowQualScore : .. . . . . . . . . . ....... . .. .. .. . ..... . . ........... . . . . . . . . ... ............... . . . ..... . .. . . .. ...... . . .. . ............ . ... ................................................. ....... . . .. . . ....... ....... . . . . . . . . .... .............. .... ..... . ........... . ..... . . ................................................................ . . ... . ... . . .. . . . . . ......... .. . . . .. . .. . .... . . .. ....... .. .... . .. .. .. ... . ....... ...... ........... . . . .............. . .. . . ........ .... . . ................................................................................ . . . .................. .. . . . .
lowQualScore : 22 2 0 0 0 0 0 6 0 0 5555555 0 11 55 66 0 77777 0 0 00000000000 0 0 8 0 0 0 0 0 111 000000000000000 2 1 0 44444 7 99 4 7 77 444444 0 2 77 7 888888888888 7 555 2222222222222222222222222222222222222222222222222 0000000 0 0 00 8 8 2222222 0000000 8 0 8 5 5 0 0 2 2222 00000000000000 2222 55555 0 55555555555 0 55555 2 0 7777777777777777777777777777777777777777777777777777777777777777 7 0 333 3 333 7 0 55 0 5 0 0 0 555555555 55 2 0 0 22 2 88 6 0000 0 7 99 6666666 99 1111 5 55 33 77 777 7 6666666 444444 33333333333 7 7 7 11111111111111 4 99 2 5 00000000 0000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 000000000000000000 55 5 0 0 0
consensus : CAGACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCCCCCACTG-NA-TTGTAC--GNATAT---AAACGAAAT-A-TCAAAC-TTTA-TA-----ACAGA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTG-------ACTAT-TTATTATGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-TA-TGATTCG--AT-TGTTTGC-GGATT---TA-T-GACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGAAAGGAGGTGCACCCCATTGAAC---GTAGACTTGAAA---TGTTTTACCGATTACT-TACNTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATAAT-GTT-ACG-TTAATTCGACATGCCCG-AAGTTACAAAATCA--C-TGGATTTG-TCACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGAAATAA---A-TTTAA-------TAGTA------TACATGGAGATTTACCACC--C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGA--C--AT-----A-TTTATTACGTCCCC--CATCAGT-A-GGG--CCAGAATTTGTCGAAGGGG-G--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGANCAGGTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAAATACAGTGGCGGNTTTGNAGGGGGNAGGGGG
Reference ( family-382 ) : CAGACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCCCCCACTG-NA-TTGTAC--GNATAT---AAACGAAAT-A-TCAAAC-TTTA-TA-----ACAGA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTG-------ACTAT-TTATTATGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-TA-TGATTCG--AT-TGTTTGC-GGATT---TA-T-GACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGAAAGGAGGTGCACCCCATTGAAC---GTAGACTTGAAA---TGTTTTACCGATTACT-TACNTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATAAT-GTT-ACG-TTAATTCGACATGCCCG-AAGTTACAAAATCA--C-TGGATTTG-TCACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGAAATAA---A-TTTAA-------TAGTA------TACATGGAGATTTACCACC--C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGA--C--AT-----A-TTTATTACGTCCCC--CATCAGT-A-GGG--CCAGAATTTGTCGAAGGGG-G--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGANCAGGTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAAATACAGTGGCGGNTTTGNAGGGGGNAGGGGG
gi|1 : CAGACGACAA-ACAAAT-TGC-A-GGGA-CGGAATCCAGGAATGTT-T-GAAA-------GGG-ATG-TCTA--CA--TT-TTGA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AATGAA-AGGA---------------GGGTGGGGTGGG----TCCG--ACTCCCTAGCCCCCCCCCCCCTTCCTCTGGATCTCCC-CTG-TA-TTGTAT--GTA-AT---AAACAAAAT-A-TCAAA---TTA-TA-----ACAGAGAAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTA-------ACTAT-TTATTATGTTCCCCCACAT-AAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-CA-TGATTCG--AT-TGTTTGC-GGATT---T--T-GA-AATGC-AATTT-------AAATTTT-ACATTTTGCA-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNCACA-AAAGAAGGTGCACCCCACTGAAC---GTAGACTTGAAA---T---TTACTTATTGCG-TACTTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATGAT-GTT-ACG-TTAATTCGATATGCCCG-AAGTTAC-AAATCA--C-TGGATTTG-TCACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGATATAA---A-TTTAA-------TAGTA------TACATGGAGATTTACCACCA-C-CCAC-CCCCGAACGCAGACTGCAATGTCGCGA--C--AC-----A-TTTATTACGTCCCC--CATCAGT-AGGGG--CCAGAATTTGTCAAAGGGGTG--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGA-TAACGACCA-GTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCC-AAATACAGTGGCGGATTTAGAGGGGGCAGGGAG
gi|10 : CAAACGACACTGCAAATCTGC-AAGGGG-CCGA-TCCAGGAAT-TT-T-GAA---------GG-GT--TCTAAGCACTTT-TTGA-CAA-TGTT-----------ATTTAAG-C-GA-TTA-T-T-TTAAACGAA-A--G---------------CGGCGGGGcc
gi|11 : caATCACT-TACCTTTC-CCCCAT-ATACATTCGTGAACCTTTTT-CAAAGC--AA----GTTT-AATAAT-GCT-ACG-----TTCGATATGCCCG--AGTTAC-AAATCA--A-ACGTTTTG-TCACA--A-------ATAT--ATCA----AAtccttaaggtcaatccctat
gi|12 : t-TCTA--CA--TT-TTTA-C-A-T-TT-----------ATAT-AG-CAAA-ATA-T-T-TT-AACGAA-GGGG---------------GAG-GGGGAGA-------CA--A-CCCCTAGA-TCCCCCCG------GGTGGATCCGCCACTG-AA-TTGTAC--AGATTT---AAAC-AAAT-A-
gi|13 : A-------TAGTA------TAAAT--AAATTT--------C-CTGC-CC--GAACGTTGGCTGCAATGTCGTGA--C--CT-----A-TTTATGACGTTCCTCACATCAGTGA-AGGATCCAGAATTTGTCGAAAGGG-A--GAGGG
gi|14 : -TTACA--A-------ATCA--ATCA----AACATTATA-TA---AGAAATAA---A-TGCAA-------TAGTA------TATATGGAAA--TACTCTC--C-CCA----CCGAACGTAGGTTACAATG--GCG-------T-----A-T------CCCCCCC--CATCAGT-g
gi|15 : tAAACGACAG-A-AAAT-TTC-A-AGGG-TGGA-TCAAATGATTTT-T-GAAA-------TGG-GTT-TCTA--CA--TTATTC--------TT-----------ATTT-AG-C-AA-TTGTT-T-TT-CATGAA-A--G---------------GGGTGGGGg
gi|16 : A-ACAAAT-TGC-A-GGGG-TGGA-TCCATGAA-GTT-TCTAAA-------GGG-GT------------------------T-CT-----------ATTT-A--CAAA-TTA-T-T-TT-TACTAA-GGGG---------------GGGattg
gi|17 : cCAGACGACAC--CAACT-TGC-A-GGGT-CGTA-TAAAGGAATGTT-T-GAGA-------GGGAGTG-TCTA--CA--Tg
gi|18 : caGACGA-ACAA-T-TGCTA-GGGA-CGGA-TCCAGGAATGTTGT-GAAA--------GG-ATG-TC
gi|2 : acaT----C--TCTGCTTCGAGCAC--AGGCTGCAAATTG---AC-TA-------CCTAT-TTATT-TGT-CCCCCACATTGAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AATGTAAA--TG-TT-TGATTCG--CT-TGTTTGC-GGATC---TAAT-GATAATGC-AATTTTTAAAAAAAATTTTTCCATTTTGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAACACAGAAAG-AGGTGCACCCCATTGAAC---GTAGAC-TGAAA---TGTTTTACCGATTACT-TCCGCCCCGCCCCCTGATAAATTCGTGCAATCTCTTGCAAAG---AGCGTAGCCAAAATTATGGTTGACGATTAATTCGAC-TGCCCGCGAGTTACAAAATTA--C-TGGATTTGTTCACA--ATACCGTGGTAT--ATCA----GA-ATTT--ATCG-CAG--ATAA---A-TCTAA-------TAGTATACTAGTACATGGCGA-TTACCACT--CACCACGCCCCGAACGCAGACTGCAATGCCGCGA--CAAAT-----A-TTTATTACGTCCCC--
gi|2 : aGGTAAAGATTAACGAACAGGTGATCAATA------------------CTCGT--GTCCCAAAATACAGTGGCGGCTTTGTAGGGGGGAAGGGGacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtaaagattaacgaacaggtgatcaatactcgtgtcccaaaatacagtggcggctttgtaggggggaaggggggc
gi|3 : atctctgcttcgagcacaggctgcaaattgactacctatttatttgtcccccacattgaatatggactgtcaaagcagtggagatgaaatgtaaatgtttgattcgcttgtttgcggatctaatgataatgcaatttttaaaaaaaatttttccattttgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaaacacagaaagaggtgcaccccattgaacgtagactgaaatgttttaccgattacttccgccccgccccctgataaattcgtgcaatctcttgcaaagagcgtagccaaaattatggttgacgattaattcgactgcccgcgagttacaaaattactggatttgttcacaataccgtggtatatcagaatttatcgcagataaatctaatagtatactagtacatggcgattaccactcaccacgccccgaacgcagactgcaatgccgcgacaaatatttattacgtccccacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGACGACAA--CAAAT-TGC-A-GGGAACAGA-TCCAGGAATGTT-T-GAAA-------GGA-GTG-TCTA--CAT-TT-TTGA-C-A-T-TT-----------ATTT-AG-CAAA-AT--T-T-TT-AATGAA-CAGG---------------GGGTGGGGTGGG----TCCG--A-CCCCTAGACCCACCTCC------TCTGGATCCCCCACTG-TA--TGTAT--GTTTAT---AAAC-AAATAA-TCAAAC-T---------------A-ATAA-----------------T--------TT----C--TCT-CTTCGAGCA--CAGGCTGC-A--TG---ACGTG-------ACC-T-TTATTATGT--CCCCACAT-GAG-TATGGACTGTCAAAGCAGTGCCAGGAGATGAAATTAA-----A--TGTTA-TGATTCGAAAT-TGTTTGT-GGATT---TA-T-GA-AATGC-AATTTTA---AAAAATTTT-ACATTTTGCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNCACAGAAAGGAGGTGCACCCCATTCAATGCGGTAGACTTGAAATGTTGTTTTTCCGATTACTATAC--TCC-CC---T-ATACATTCGTGCACCCACTT-CAAAGTCAAG----GCCAAAATAAT-GTT-ACG-TTAATTCGACATGCCCGAAAGTTACAAAATTA--CTTGGATTTG-TCACA--A-------ATAT--ATCA----ACCATTTT-ATAG-CGG--ATAA---A-TTTAATAGATACTAGTA------CACATGGCGA-TTACCACTCAC-CCAC-CCCAGAACGCAGCCTGCAATGCCGCGA--C--AT-----ATTTTAATATGACCCA--CAggc
gi|4 : aA--TT-TTAA---A-T-TT-----------ATTT-AGGCAAA-TTG-T-TATT-AACGGG-GGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGTGGGGGAC----TTGAAATCCTCCT------TCTGGATCGTCGCCTG-GAATTGTACTAGGATAT---AAACGCAAT-AGTAAAAC-TTCT-TAGTGACACAAA-AAAACAGGTAGGCAGCATAGAT---TGAA-TTACCGC--TCT-TTT---GCTCTCAGGC-ACAG--CGTTTGCGTGTTTATGAGCCAT-TTATTATGTTCTAT-ACAT-AAAATATGGCTTG---AAGCGGT----AGTGATGA----AA-----AAGTG-TAATAATTTG--ACCTGTTTACAGGATTGACTA-TTGGCAATGCTAATTAT----AAG--TTTT-ACATTTTG
gi|5 : ACGACCG--CAAAT-TCC-A-GGGG-CGGA-TCCAGGAATTTT-T-GAAACGGGGGGGGG-GT--TCTA--CT--TT-TTTA-C-A-T-TT-----------ATTT-AA-CAAA-TTA-TCT-TT-AACGAA-AAG-------------------------GGG----TCCG--ACCCC---G---------C------TC-GGGCCCGCAACTG-AA-TTGTAA--AAAAAA---AACCGAAAT---TCAAACTTTTACTA-----ACAGA-AATA-----------------TATAT-AAGTT----CCATCT-CTT-GAACGC-AAGACTGTAA--AG---ACGTG-------A-TATATTATTAacttcgcttgcctatactgcaaca
gi|6 : ACGACAA-ACAAAT-TGC-A-GGGA-CAGA-TC-AGGAATGTT-T-GAAA-------GGA-GTGGTCCT--CA--TT-TTGAAC-A-T-TTTACATAATCGTATTTTAG-CAAAATTA-TAT-TC-AATGAATAGGG---------------GGGTGG--TGGG----TCCG--ACCCCCTAGACCCCCCTCC------TCTGGATCCCCCACTGTAA-TTGTAA--GTATACTAGAAAC-AAAT-A-TCAAAC---TA-TA-----ACActtc
gi|7 : agcTGTCCG-AAGTTA-AATGTCATAC-TGT-TCTG-TGATGGTA-------ACATTCGTCAGTTGAAAGTTTTGGTAAACACAAATAACATACTTTAA-------TAGTG------TACATGGAGATGGA-CACC--C-CAAC-CCCC-AAC-CAGGCTGCAATGTCGTGAATC--ATGGCCAA-TTTATCACGTCCCC--C
gi|8 : CAAAAGACAA-ACAA-T-TGC-A-GGTG-CGGA-TCCAGGAATATT-T-GAAAAAGG---GGG-GGG-GCTA--TA--TT-TTCA-C-ATT-TT-----------ATTT-AG-CAAA-TCA-T-T-TT-TTCAAA-AGGT---------------GGG-GGAGAGA--------G--A-CCTCTAGACCACCCCCC------CC-----CCCCC
gi|9 : GGTTTG-TCACA--A-------ATAT--ATCA----TACATTTT-ATAA-CATAAATTT---A-TTT---------TAGTA------TACATGGAAAT-----ACC--C-CCTC-CCCCGAACGTAGGTTACAAT------A--C-------------TGTTACGTCCCC--AA-CA--------------------TCGAGGGGG-GCCGGGGGT-GGGT-GGGTCCGTTGAAAGAGccccccccccccccacgtgtggaatag
blockSeqs : TG A C T A A . T G C CGGGGGG A GG AG CT A GACA T G TACATAATCGT A G A T C A A TAG GGGGGGGGGGGGGGG C A GGGGG GG C AC . T A TA A AGTATACTAG G AA TTCTTAGTGACACAAAAAAACAGGTAGGCAGCATAGATTGAA ACCGC G C TC CGTTT TTTATGA A T C T A T GCCA AATGTAAA TTA AAAT A GACTATTGGC T TTAAA A T TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G G GCG T TGT G A CT G C A G G AGCGTA AA A G G AT A CG A TAC T T GT TACCGTG TC GTTG C GG AA AA CAT C TAGATAC TACTAG TTACCACTCA A G T ATCATGGCCAA T CA T G GAAGGAT GCC . . T A G . . A C T G
blockSeqs : A A . . . . . G . . AAGG . T . T . GAAC . . . T . . . A . . GG . T T G . C AA . T A A . CTAGGATAT G AG TTTTACTAACAGAAATATATATAAG CCA . C C ATTG . . . C . . T . AATTAAA TAA ACC . TAATGAT . TA A . TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G . . . . G . GC . C C . . TCAAG AA T . . T A AA A CT A . . . . . C A G AA . . . . TTACCACT . . C CAAATA T . T G . A
blockSeqs : A A . . . . . G . . . . G . . . TAC . . . . . . . . . . GG . T G G . C AC . T C T . CAGATTT . A TAATAAT C . . A TG . . . . . . . . AAAAG TT CT . TATGA . T . . . . . . . . . CAA T A . . . . A A A A . . . . . A A G AA . . . . TGGACACC . . C CATAT T . . .
blockSeqs : A C . . . . . G . . . . G . . . GAC . . . . . . . . . . CA . T T G . . AC . T A G . TGTTTAT . A C . . . AG . . . . C G . . . . . C A A . . . . . TACTCTC . . T CCTA T .
blockSeqs : A A . . . . . G . . . . G . . . TAC . . . . . . . . . . GG . T A . . . A . . A A . AAAAAAA . . . . . . . . . A . . . . . . TACC . . . TA . .
blockSeqs : A A . . . . . T . . . . G . . . CAC . . . . . . . . . . AA . . . . . . . . . . . . . . . . TTT . . . C . .
blockSeqs : . A . . . . . G . . . . . . . . AA . . . . . . . . . . AG . .
blockSeqs : . . . . . . . A . . . . . . . . C . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : .
blockSeqCons : ****** CGNATAT***** G* A* TTACCACC*** CATA**********
originalCons : CAGACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCCCCCACTG-NA-TTGTAC--GNATAT---AAACGAAAT-A-TCAAAC-TTTA-TA-----ACAGA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTG-------ACTAT-TTATTATGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-TA-TGATTCG--AT-TGTTTGC-GGATT---TA-T-GACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGAAAGGAGGTGCACCCCATTGAAC---GTAGACTTGAAA---TGTTTTACCGATTACT-TACNTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATAAT-GTT-ACG-TTAATTCGACATGCCCG-AAGTTACAAAATCA--C-TGGATTTG-TCACA--A-------ATAT--ATCA----AACATTTTAATAG-CAGAAATAA---A-TTTAA-------TAGTA------TACATGGAGATTTACCACC--C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGA--C--AT-----A-TTTATTACGTCCCC--CATCAGT-A-GGG--CCAGAATTTGTCGAAGGGG-G--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGANCAGGTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAAATACAGTGGCGGNTTTGNAGGGGGNAGGGGG
finalCons : CAGACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCCCCCACTG-NA-TTGTACGNATAT-----AAACGAAAT-A-TCAAAC-TTTA-TA-----ACAGA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTG-------ACTAT-TTATTATGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-TA-TGATTCG--AT-TGTTTGC-GGATT---TA-T-GACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGAAAGGAGGTGCACCCCATTGAAC---GTAGACTTGAAA---TGTTTTACCGATTACT-TACNTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATAAT-GTT-ACG-TTAATTCGACATGCCCGG-AGTTACAAAATCA--C-TGGATTTG-TCACA--A-------ATAT--ATCA----AACATTTTA-TAG-CAGAAATAA---A-TTTAA-------TAGTA------TACATGGAGATTACCACC---C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGACATA----------TTTATTACGTCCCC--CATCAGT-A-GGG--CCAGAATTTGTCGAAGGGG-G--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGANCAGGTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAAATACAGTGGCGGNTTTGNAGGGGGNAGGGGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGTCCGAAGTTAAATGTCATACTGTTC
Alignments
lowQualScore : 11 2222222 11 11111111111 222222222222222 11111 1 111111 111111111111 1 111 9999999999999999999999999999999999999999999999999 1111111 1 11 1111111 2222222 1 1 1 2222 33333333333333 1111 11111 1 22222222222 1 33333 1 9999999999999999999999999999999999999999999999999999999999999999 1 222 222 1 11 1 1 1 222222222 1 1 11 22 1 1 2222222 11 111 1111111 111111 11 22222222222222 44444444 2222 1 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1 666666666666666666 11 1
lowQualScore : 11 3 4 4 4 4 4 1 4 4 1111111 4 11 55 88 4 88888 4 4 99999999999 8 4 0 4 4 8 4 4 555 555555555555555 6 0 3 66666 0 77 1 0 55 666666 5 3 77 6 222222222222 7 222 9999999999999999999999999999999999999999999999999 8888888 8 0 33 0 0 4444444 6666666 0 8 0 5 2 0 0 3 1111 33333333333333 2222 55555 0 66666666666 0 44444 3 0 5555555555555555555555555555555555555555555555555555555555555555 6 2 333 7 333 6 0 11 0 2 3 0 0 666666666 77 1 0 0 33 3 22 5 0 6 1111111 0 8 3 00 111 6 8888888 666666 5 11 1 33 5 5 5 55555555555555 1 77 3 2 11111111 7777 5 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000 5 1 5 444444444444444444 88 5 1 1 1
lowQualScore : .. . . . . . . . . . ....... . .. .. .. . ..... . . ........... . . . . . . . . ... ............... . . . ..... . .. . . .. ...... . . .. . ............ . ... ................................................. ....... . . .. . . ....... ....... . . . . . . . . .... .............. .... ..... . ........... . ..... . . ................................................................ . . ... . ... . . .. . . . . . ......... .. . . . .. . .. . . . ....... . . . .. ... . ....... ...... . .. . .. . . . .............. . .. . . ........ .... . . ................................................................................ . . . .................. .. . . . .
lowQualScore : 22 2 0 0 0 0 0 6 0 0 5555555 0 11 55 66 0 77777 0 0 00000000000 0 0 8 0 0 0 0 0 111 000000000000000 2 1 0 44444 7 99 4 7 77 444444 0 2 77 7 888888888888 7 555 2222222222222222222222222222222222222222222222222 0000000 0 0 00 8 8 2222222 0000000 8 0 8 5 5 0 0 2 2222 00000000000000 2222 55555 0 55555555555 0 55555 2 0 7777777777777777777777777777777777777777777777777777777777777777 7 0 333 3 333 7 0 55 0 5 0 0 0 555555555 55 2 0 0 22 2 55 5 0 7 7777777 8 0 7 77 777 7 6666666 444444 7 77 4 66 7 7 7 11111111111111 4 99 2 5 00000000 0000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 000000000000000000 55 5 0 0 0
consensus : CAGACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCCCCCACTG-NA-TTGTAC--GNATAT---AAACGAAAT-A-TCAAAC-TTTA-TA-----ACAGA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTG-------ACTAT-TTATTATGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-TA-TGATTCG--AT-TGTTTGC-GGATT---TA-T-GACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGAAAGGAGGTGCACCCCATTGAAC---GTAGACTTGAAA---TGTTTTACCGATTACT-TACNTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATAAT-GTT-ACG-TTAATTCGACATGCCCG-GAGTTACAAAATCAC-TGGATTTG-TCACAA-------ATATATCAAACATTTT-ATAGCAGAAATAA---A-TTTAA-------TAGTA------TACATGGAGA-TTACCACC--C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGA--C--AT-----A-TTTATTACGTCCCC--CATCAGT-A-GGG--CCAGAATTTGTCGAAGGGG-G--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGANCAGGTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAAATACAGTGGCGGNTTTGNAGGGGGNAGGGGG
Reference ( family-382 ) : CAGACGACAA-ACAAAT-TGC-A-GGGG-CGGA-TCCAGGAATGTT-T-GAAA-------GGG-GTG-TCTA--CA--TT-TTNA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AACGAA-AGGG---------------GGGTGGGGNGGG----TCCG--ACCCCCTAGACCCCCCCCC------TCTGGATCCCCCACTG-NA-TTGTAC--GNATAT---AAACGAAAT-A-TCAAAC-TTTA-TA-----ACAGA-AAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTG-------ACTAT-TTATTATGTTCCCCCACAT-GAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-TA-TGATTCG--AT-TGTTTGC-GGATT---TA-T-GACAATGC-AATTTT----AAAAATTTT-ACATTTTGCATTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---CTGAAACACAGAAAGGAGGTGCACCCCATTGAAC---GTAGACTTGAAA---TGTTTTACCGATTACT-TACNTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATAAT-GTT-ACG-TTAATTCGACATGCCCG-GAGTTACAAAATCAC-TGGATTTG-TCACAA-------ATATATCAAACATTTT-ATAGCAGAAATAA---A-TTTAA-------TAGTA------TACATGGAGA-TTACCACC--C-CCAC-CCCCGAACGCAGGCTGCAATGTCGCGA--C--AT-----A-TTTATTACGTCCCC--CATCAGT-A-GGG--CCAGAATTTGTCGAAGGGG-G--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGATTAACGANCAGGTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCCAAAATACAGTGGCGGNTTTGNAGGGGGNAGGGGG
gi|1 : CAGACGACAA-ACAAAT-TGC-A-GGGA-CGGAATCCAGGAATGTT-T-GAAA-------GGG-ATG-TCTA--CA--TT-TTGA-C-A-T-TT-----------ATTT-AG-CAAA-TTA-T-T-TT-AATGAA-AGGA---------------GGGTGGGGTGGG----TCCG--ACTCCCTAGCCCCCCCCCCCCTTCCTCTGGATCTCCC-CTG-TA-TTGTAT--GTA-AT---AAACAAAAT-A-TCAAA---TTA-TA-----ACAGAGAAAA-----------------T---T-AA-TT----C--TCT-CTTCGAGCAC-CAGGCTGCAA--TG---ACGTA-------ACTAT-TTATTATGTTCCCCCACAT-AAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AA-----A--TG-CA-TGATTCG--AT-TGTTTGC-GGATT---T--T-GA-AATGC-AATTT-------AAATTTT-ACATTTTGCA-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNCACA-AAAGAAGGTGCACCCCACTGAAC---GTAGACTTGAAA---T---TTACTTATTGCG-TACTTTCC-CCCCAT-ATACATTCGTGCACCCTCTT-CAAAGC--AG----GCCGAAATGAT-GTT-ACG-TTAATTCGATATGCCCG-AAGTTAC-AAATCAC-TGGATTTG-TCACAA-------ATATATCAAACATTTTAATAGCAGATATAA---A-TTTAA-------TAGTA------TACATGGAGATTTACCACCA-C-CCAC-CCCCGAACGCAGACTGCAATGTCGCGA--C--AC-----A-TTTATTACGTCCCC--CATCAGT-AGGGG--CCAGAATTTGTCAAAGGGGTG--GGGGGTGGGGTGGGGTCCGTTGAAAGAGGGGAACTATTAAAAAATTTAAGTCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAAGA-TAACGACCA-GTGACCAATATGACTTCATGGATAATATCTCGTAAGTCCC-AAATACAGTGGCGGATTTAGAGGGGGCAGGGAG
gi|10 : CAAACGACACTGCAAATCTGC-AAGGGG-CCGA-TCCAGGAAT-TT-T-GAA---------GG-GT--TCTAAGCACTTT-TTGA-CAA-TGTT-----------ATTTAAG-C-GA-TTA-T-T-TTAAACGAA-A--G---------------CGGCGGGGcc
gi|11 : caATCACT-TACCTTTC-CCCCAT-ATACATTCGTGAACCTTTTT-CAAAGC--AA----GTTT-AATAAT-GCT-ACG-----TTCGATATGCCC--GAGTTAC-AAATCAA-ACGTTTTG-TCACAA-------ATATATCAAAtccttaaggtcaatccctat
gi|12 : t-TCTA--CA--TT-TTTA-C-A-T-TT-----------ATAT-AG-CAAA-ATA-T-T-TT-AACGAA-GGGG---------------GAG-GGGGAGA-------CA--A-CCCCTAGA-TCCCCCCG------GGTGGATCCGCCACTG-AA-TTGTAC--AGATTT---AAAC-AAAT-A-
gi|13 : A-------TAGTA------TAAAT--AAA-TTTCC----------T-GCCCGAACGTTGGCTGCAATGTCGTGA--C--CT-----A-TTTATGACGTTCCTCACATCAGTGA-AGGATCCAGAATTTGTCGAAAGGG-A--GAGGG
gi|14 : -TTACAA-------ATCAATCAAACATTAT-ATA--AGAAATAA---A-TGCAA-------TAGTA------TATATGGAAA--TACTCTC--C-CCA----CCGAACGTAGGTTACAATG--GCG-------T-----A-T------CCCCCCC--CATCAGT-g
gi|15 : tAAACGACAG-A-AAAT-TTC-A-AGGG-TGGA-TCAAATGATTTT-T-GAAA-------TGG-GTT-TCTA--CA--TTATTC--------TT-----------ATTT-AG-C-AA-TTGTT-T-TT-CATGAA-A--G---------------GGGTGGGGg
gi|16 : A-ACAAAT-TGC-A-GGGG-TGGA-TCCATGAA-GTT-TCTAAA-------GGG-GT------------------------T-CT-----------ATTT-A--CAAA-TTA-T-T-TT-TACTAA-GGGG---------------GGGattg
gi|17 : cCAGACGACAC--CAACT-TGC-A-GGGT-CGTA-TAAAGGAATGTT-T-GAGA-------GGGAGTG-TCTA--CA--Tg
gi|18 : caGACGA-ACAA-T-TGCTA-GGGA-CGGA-TCCAGGAATGTTGT-GAAA--------GG-ATG-TC
gi|2 : acaT----C--TCTGCTTCGAGCAC--AGGCTGCAAATTG---AC-TA-------CCTAT-TTATT-TGT-CCCCCACATTGAA-TATGGACTGTCAAAGCAGT----GGAGATGA----AATGTAAA--TG-TT-TGATTCG--CT-TGTTTGC-GGATC---TAAT-GATAATGC-AATTTTTAAAAAAAATTTTTCCATTTTGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAACACAGAAAG-AGGTGCACCCCATTGAAC---GTAGAC-TGAAA---TGTTTTACCGATTACT-TCCGCCCCGCCCCCTGATAAATTCGTGCAATCTCTTGCAAAG---AGCGTAGCCAAAATTATGGTTGACGATTAATTCGAC-TGCCCGCGAGTTACAAAATTAC-TGGATTTGTTCACAATACCGTGGTATATCAGA-A-TTT-ATCGCAG--ATAA---A-TCTAA-------TAGTATACTAGTACATGGCGA-TTACCACT--CACCACGCCCCGAACGCAGACTGCAATGCCGCGA--CAAAT-----A-TTTATTACGTCCCC--
gi|2 : aGGTAAAGATTAACGAACAGGTGATCAATA------------------CTCGT--GTCCCAAAATACAGTGGCGGCTTTGTAGGGGGGAAGGGGacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtaaagattaacgaacaggtgatcaatactcgtgtcccaaaatacagtggcggctttgtaggggggaaggggggc
gi|3 : atctctgcttcgagcacaggctgcaaattgactacctatttatttgtcccccacattgaatatggactgtcaaagcagtggagatgaaatgtaaatgtttgattcgcttgtttgcggatctaatgataatgcaatttttaaaaaaaatttttccattttgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaaacacagaaagaggtgcaccccattgaacgtagactgaaatgttttaccgattacttccgccccgccccctgataaattcgtgcaatctcttgcaaagagcgtagccaaaattatggttgacgattaattcgactgcccgcgagttacaaaattactggatttgttcacaataccgtggtatatcagaatttatcgcagataaatctaatagtatactagtacatggcgattaccactcaccacgccccgaacgcagactgcaatgccgcgacaaatatttattacgtccccacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGACGACAA--CAAAT-TGC-A-GGGAACAGA-TCCAGGAATGTT-T-GAAA-------GGA-GTG-TCTA--CAT-TT-TTGA-C-A-T-TT-----------ATTT-AG-CAAA-AT--T-T-TT-AATGAA-CAGG---------------GGGTGGGGTGGG----TCCG--A-CCCCTAGACCCACCTCC------TCTGGATCCCCCACTG-TA--TGTAT--GTTTAT---AAAC-AAATAA-TCAAAC-T---------------A-ATAA-----------------T--------TT----C--TCT-CTTCGAGCA--CAGGCTGC-A--TG---ACGTG-------ACC-T-TTATTATGT--CCCCACAT-GAG-TATGGACTGTCAAAGCAGTGCCAGGAGATGAAATTAA-----A--TGTTA-TGATTCGAAAT-TGTTTGT-GGATT---TA-T-GA-AATGC-AATTTTA---AAAAATTTT-ACATTTTGCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNCACAGAAAGGAGGTGCACCCCATTCAATGCGGTAGACTTGAAATGTTGTTTTTCCGATTACTATAC--TCC-CC---T-ATACATTCGTGCACCCACTT-CAAAGTCAAG----GCCAAAATAAT-GTT-ACG-TTAATTCGACATGCCCGAAAGTTACAAAATTACTTGGATTTG-TCACAA-------ATATATCAACCATTTT-ATAGCGG--ATAA---A-TTTAATAGATACTAGTA------CACATGGCGA-TTACCACTCAC-CCAC-CCCAGAACGCAGCCTGCAATGCCGCGA--C--AT-----ATTTTAATATGACCCA--CAggc
gi|4 : aA--TT-TTAA---A-T-TT-----------ATTT-AGGCAAA-TTG-T-TATT-AACGGG-GGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGTGGGGGAC----TTGAAATCCTCCT------TCTGGATCGTCGCCTG-GAATTGTACTAGGATAT---AAACGCAAT-AGTAAAAC-TTCT-TAGTGACACAAA-AAAACAGGTAGGCAGCATAGAT---TGAA-TTACCGC--TCT-TTT---GCTCTCAGGC-ACAG--CGTTTGCGTGTTTATGAGCCAT-TTATTATGTTCTAT-ACAT-AAAATATGGCTTG---AAGCGGT----AGTGATGA----AA-----AAGTG-TAATAATTTG--ACCTGTTTACAGGATTGACTA-TTGGCAATGCTAATTAT----AAG--TTTT-ACATTTTG
gi|5 : ACGACCG--CAAAT-TCC-A-GGGG-CGGA-TCCAGGAATTTT-T-GAAACGGGGGGGGG-GT--TCTA--CT--TT-TTTA-C-A-T-TT-----------ATTT-AA-CAAA-TTA-TCT-TT-AACGAA-AAG-------------------------GGG----TCCG--ACCCC---G---------C------TC-GGGCCCGCAACTG-AA-TTGTAA--AAAAAA---AACCGAAAT---TCAAACTTTTACTA-----ACAGA-AATA-----------------TATAT-AAGTT----CCATCT-CTT-GAACGC-AAGACTGTAA--AG---ACGTG-------A-TATATTATTAacttcgcttgcctatactgcaaca
gi|6 : ACGACAA-ACAAAT-TGC-A-GGGA-CAGA-TC-AGGAATGTT-T-GAAA-------GGA-GTGGTCCT--CA--TT-TTGAAC-A-T-TTTACATAATCGTATTTTAG-CAAAATTA-TAT-TC-AATGAATAGGG---------------GGGTGG--TGGG----TCCG--ACCCCCTAGACCCCCCTCC------TCTGGATCCCCCACTGTAA-TTGTAA--GTATACTAGAAAC-AAAT-A-TCAAAC---TA-TA-----ACActtc
gi|7 : agcAACACAAATAACATACTTTAA-------TAGTG------TACATGGAGA-TGGACACC--C-CAAC-CCCC-AAC-CAGGCTGCAATGTCGTGAATC--ATGGCCAA-TTTATCACGTCCCC--C
gi|8 : tgtccgaagttaaatgtcatactgttctgtgatggtaacattcgtcagttgaaagttttggtaCAAAAGACAA-ACAA-T-TGC-A-GGTG-CGGA-TCCAGGAATATT-T-GAAAAAGG---GGG-GGG-GCTA--TA--TT-TTCA-C-ATT-TT-----------ATTT-AG-CAAA-TCA-T-T-TT-TTCAAA-AGGT---------------GGG-GGAGAGA--------G--A-CCTCTAGACCACCCCCC------CC-----CCCCC
gi|9 : GGTTTG-TCACAA-------ATATATCATACATTTT-ATAACATAAATTT---A-TTT---------TAGTA------TACATGGAAA-T----ACC--C-CCTC-CCCCGAACGTAGGTTACAAT------A--C-------------TGTTACGTCCCC--AA-CA--------------------TCGAGGGGG-GCCGGGGGT-GGGT-GGGTCCGTTGAAAGAGccccccccccccccacgtgtggaatag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGTCCGAAGTTAAATGTCATACTGTTC