lowQualScore : 11111111111111111111111111111111111111111111111111
lowQualScore : 3 22222 11 111 222222222 11111111111111111111111111111111111111111111111111 5555555555555555555555555 111 111 33 5555555555555555555 333 111 1 1 4 2 3333 1 3333 22 4 1 4 1 2222 1 1 33333 66666666 444 1 3333333333333 1111 111 444444444 4444444
lowQualScore : 3 6 22 77777 77 77 555 222222222 00000000000000000000000000000000000000000000000000 0 0 3333333333333333333333333 5 000 999 0 55 6 4444444444444444444 7 0 0 777 222 8 1 3 3 6 7 0 3 0 6666 7 2 55 8 3 4444 99 0 5 2 0 0 9 1111 2 0 0 88888 66666666 555 99 5 0 0 5 77 3 5 0 5 66 7777777777777 5 5 66 999 7777 4 222 333333333 55 8888888
lowQualScore : . . .. ..... .. .. ... ......... .................................................. . . ......................... . ... ... . .. . ................... . . . ... ... . . . . . . . . . .... . . .. . . .... .. . . . . . . .... . . . ..... ........ ... .. . . . . .. . . . . .. ............. . . .. ... .... . ... ......... .. .......
lowQualScore : 3 7 11 00000 99 77 000 999999999 99999999999999999999999999999999999999999999999999 4 4 9999999999999999999999999 7 000 666 3 77 0 8888888888888888888 0 8 8 000 000 0 2 3 3 7 3 0 3 7 0000 0 8 88 8 2 8888 88 0 0 0 0 0 0 2222 5 5 5 55555 66666666 999 22 7 4 1 7 11 6 0 4 0 99 4444444444444 0 0 99 444 0000 2 333 222222222 11 9999999
consensus : ACAGT-ACCTGGCCATAAGTGAG--GTCAT--CAT-TTT--CATT---------TTTT------------CTCACT-ATAT--ATTTCGNTNGAAAACACAATT---TTTTTGTAAAAATCTATTGT-A----GATGT--GAATTT-G-T--ACC-AATTTTC---AT-A-TTTTTTCA--CATATTAT----NCA-----A--AAA-TTGTTGAAATTTTCTTTTCCT-ATGATTTCTAAAT-AAATTGTGATGTCAA-GATCTG-AGAAAATCGTTTATGAAA-TCGCC-GTGGCAAAATTTTT--AACCTCAAAATACTATTANTTTCTTAACAAGTCTATTC-CGTAAAATTTCAAT-TCTG-CATTTGGCCTG-TGA-TTTCACCGCAAC----ACCAAAATATAATNTTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATTA-TATCCATAA-AA-AATGAGCTATAATGAATGC-TGCAA--TA-AGAT------C-T-TTC-A--AAAA--GGCANTTTTTCA--ATGAAA--TATA-TAGTGA-AAAAATGAAATGATGACT-CACT-TATGGCCAG
Reference ( gi|2 ) : ACA-T-ACCTGGCCATAAGTGAG--GTCAT--CAT-TTT--CATT---------TTTT------------CCCACTCATAT--ATTTTATTTGAAAACACAATT---TTTTTGTAAAAATCTATTGT-A----GATGTTTGAATTT-G-T--ACC-AATTTTC---AT-A-TTTTTTCAACCATATTAT----ACA-----A--AAAATTGTTTAAATTTTCTTTTCCTTGTGATTTCTAAAC-AAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAAATCACCCATGGCAAGATTTTT--A-CCTCAAAATACTATTACTTTCTTAAGAAGTCTAT-C-TGTAAAATTTCAACATCTGGCAGTTGGCCCGGTGA-TTTCACAGCAAC----ACCAAGATAAAATAACAATTTTGAAAAACCATGGTGAAGAAACTACAAACAATTCTGCAGTTTTT--TTTGATATTA-TATCCATAA-AA-AATGAGCTATACTGAATGC-TGCAA--TA-AGAT------C-T-TTC-A--AAAA--GGCACTTTTTCA--ATGAAAATTATACTAGTGA-AAAAATGAAATGATGACTCCACTGGATGGCCAG
gi|1 : ACAGT-ACCTGGCCATAAGTGAGTCATCATTTCATTTTTCCCACTACTGCCTGGTTTTGTGTGNNNNNNNNNNNNNNNNNN--NNNNNNNTT--AAACA---TT---TCTTTATGAAAATCTATTGT------GATGT--GAATTTTG-T--GAC-AATTTTT---ATGA-TTTTGTCA--CATATCAT----TCA-----A--AA--TTCCTGAAATATTCTTTCCC--ATTCTTTTTAAAT-AAATTGTGATGACAT-GATCTT-AGAAAATAGTTTATGAAA-TCGTC-ATGACACAATTTTC--AACCTTAAAATACTAT-AATTTCTTGACAAGTCTATTC-CGTAAAATATCAAT-TCTG-CATTTGACCTG-TGA-TTTCACCGCAAC----ACCAAAATATAATTTTA-TTTTGAAA--TCATG-TGAAGAAACTACAAACAAATCTGCA---TTA--ATTGATATGA-TATTCA-GA-AG-AATGATCTACAATAAATGC-TGCAA--T--ACAT------CTT-TTC-A--AAAA--GGTAC-TTTTCA--ATGAAA--TATG-TAGTAA-AAAAAATAAATGATGACTCC
gi|11 : tACA-TTATCTGGCCATGCGTAAG---TCAT--CAT-TTC--AATT---------TTT---------------CACT-ATATGCATTTCA-TTGAA-----AATTGCCTTTTTG-AAAAgtaatgacctgttaatgtagattg
gi|5 : ACAGT-ACCTAGCCATA--TG-----TCAT--CAT-TT---CATT---------TTTT------------C--ACT-ATAT--GTCATGGGGGAAAACCCCCCA---TTTTTATGAAAATTTATTGC-ATTAAGATG----AATATAG-T--AC---ATGTAC---AT-A-TTTTCTGAATCAAATTATTTTCACATAGTCATTAAAATTGTTGAAATTTTCTTTTCA-TATGA-TGCTAAGC-AAATTGTGATGCCAa
gi|14 : ctACAGT-ACCTGGCCATAAGTGA---GTCAT--CA--TTT--CATT---------TTT
gi|15 : tACAGT-ACCCGGCCATAAGT-AA--GTCAT--CA--TTT--CATT---------TT
gi|16 : tACAGT-ACCTGGCCATAAGTGA---TTCAT--CA--TTT--CATT---------
gi|1 : tGGTCATTA-CGGA--GTCAT--CAT-TT----ATT---------TTTT-------------TTACT-ACAT--ATTTCATTGAAAAGTAC---C---TTTTTGAAAAGATGTATTGC-A----G-CATTTA---TT-G-TAGATC-ATTCTTCTGAAT-A-TCATATCAATTA----AT----GC---------AGATTTGTTTGTAGTTTCTT---CACATGATTTCAAAATAAAATTATA
gi|9 : tacagtacctggccataagtgagtcatcatttcatttttcccactactgcctggttttgtgtgnnnnnnnnnnnnnnnnnnnnnnnnnttaaacatttctttatgaaaatctattgtgatgtgaattttgtgacaatttttatgattttgtcacatatcattcaaaattcctgaaatattctttcccattctttttaaataaattgtgatgacatgatcttagaaaatagtttatgaaatcgtcatgacacaattttcaaccttaaaatactataatttcttgacaagtctattccgtaaaatatcaattctgcatttgacctgtgatttcaccgcaacaccaaaaACAATT---TTT--GTAAAAATCTATCAT------GATGT--GAATTAAG-T--ACC-AATTTTC---AT-ATTTTTTTCA--CACATTAT----TC---------TAAATTGTTGAAAtgttaatgtagattg
gi|4 : aa---TTTTTGTAAAAATCTATTGT------GATGT--GAATTT-GGT--ACC-AATTTTC---AT-AATTTTTTCA--CATATTAT----ACA-----A--AA--TTGTTTAAATTTTCTTTTCCT-GTGATT-CTAAAC-AAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAA-TCACC-ATGGCAAGATTTTT--AACCTCAAAATACTATTACTT-CTTAAGAAGTCTATTC-TGTAAAATTTCAACATCTG-CATTTGGCCCG-TGA-TTTCACAGCAAC----ACCAAAAGATAATA-CAATTTTGAAA--CCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTAGATATTA-TATCCATAA-AA-AAGGATCTATGATGAATGC-TGCAA--TA-AG-T------C-T-TTTAA--AAAA--GGC
gi|3 : aa---TTTTTGTAAAAATCTATTGT------GATGT--GAATTT-GGT--ACCTAATTTCC---AT-AATTTTTTCA--CATATTAT----TCA-----T--AAA-TTGTTGAAATT--CTTTTCCT-ATGAT--CTATAT-GAATTGTGATGTCGATGATCTGTAGAAAA-CGTTTATGAAA-TCACCCGTAGCCAAATTTTTTAA-ACTCAAAATACTATTATTCT-TTAACAAATATAT-TACGTAAAATTTCAAT-TCTG-CATTTGGGCTG-TGAATTTCACCGCAAC----ACCAA-ATATAATATTATTTTTGAAA--TCATG-TGAAAGAAATACAAACAATTCTGCA---TTT--TTAGATATTAATATTCATAA-AA-AA-GAGCTATAATGAATGCGTGCA---TA-A-AT------C-TGTTC-A--AAAC--GG-ACGTTTTCA--ATGAAA--TATAT--GTGA-AAAAATGAAATGATGACT-CACT-TAT-GCCAG
gi|13 : caa---TTTATATAAAAATTCATTATGA----GATG----AATTT-A-TT-ACC-AATTTTC---ATAA-TTTTTTCAatactgt
gi|8 : AAAATACTATCA-TTTCTTAACAAATC----------AAATTTCAAT-TCTG-CATTTGGCCTT-TGA-TTTCACCGCAACTTCTAC--AGATGATATTA---TTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCATTTT
gi|6 : ATTTTGAAA--TTATT-TGAAAAATCTGCAAACAATTTTGCA----TT--CTTAAAATGA-GATCTACAATAG-CAC-AGC---AGTAAATGT-TGTTGTTTATAGATTGTTTGC-T-TTC-A--AAAC--AGCATTTCCCC-----CAAAATTTCA-TAGTT--AAAAAT-AAATGACGACTC
gi|10 : ttCATG-TGAAGAAACTACAAATAATTCTGCA---TAT--TTTGATATTA-TATCCATGA-AA-AATGAGTTATAATGAATGC-TGCAA--TA-Aacctaagaccagatactatataga
gi|7 : AACAATTCTGCA-TTTATAATATCATATTT-TATGCATAA-AA--ATGAGCTACAAATAACAT-TACAA--TATTTTT------T-T-TTC-A--CAAT--GGC-----TTTA--TTGAA---TATAC--ATGA-AAAACTG-AATGATCACT
gi|12 : ATATTA-TATTCATAA-AAAAATGAGCTATAATAAATGC-TGATA--TA-AGTC------T-T-TTC-A--AAAtattgccgggtactgta
gi|5 : -TGCAA--TA-A-AT--------T-TTC-ATAAAAATGGGGGGTTTTCCCCCATGA----CATA-TAGTGA-AAAAATGAAATGATGACcgaccg
gi|11 : ctacagtacctagccatat-T-TTC-A--AAAA--GGCAATTTT-CA--ATGAAATGCATA-TAGTGA-AAAATTGAAATGATGACT-TAC-GCATGGCCAGttaagatgaatatagtacatgtacatattttctgaatcaaattattttcacatagtcattaaaattgttgaaattttcttttcatatgatgctaagcaaattgtgatgcca
gi|1 : tTAGTGGGAAAAATGAAATGATGACT-CACT-TATGGCCAGataatgta
gi|14 : tacagtac-AAAAATGAAATGATGACT-CACT-TATGGCCAGctgcctggttttgtgtgnnnnnnnnnnnnnnnnnnnnnnnnnttaaacatttctttatgaaaatctattgtgatgtgaattttgtgacaatttttatgattttgtcacatatcattcaaaattcctgaaatattctttcccattctttttaaataaattgtgatgacatgatcttagaaaatagtttatgaaatcgtcatgacacaattttcaaccttaaaatactataatttcttgacaagtctattccgtaaaatatcaattctgcatttgacctgtgatttcaccgcaacaccaaaatataattttattttgaaatcatgtgaagaaactacaaacaaatctgcattaattgatatgatattcagaagaatgatctacaataaatgctgcaatacatcttttcaaaaaggtacttttcaatgaaatatgtagtaaaaaaaataaatgatgactccgtaatgacctgttaatgtagattg
gi|15 : tacagtacAAAATGAAATGATGACT-TACT-TATGGCCGG
gi|16 : tacagtacAATGAAATGATGAAT-CACT-TATGGCCAG
Alignments
lowQualScore : 2 2 1 777777777777777 111111 33333333333333 11111 111 11111 111 22222 1 111 1 1 1 11 11 1 1 111 22222222222
lowQualScore : 1 3 7 777777777777777 1 000000 1 55555555555555 77 44444 777 5 5 44444 5 5 000 99999 5 77 6 1 1 6 11 0 8 222 0 0 3 3 0 22 22 0 3 0 8 0 0 777 6 8 8 8 6 0 88888 99 5 777 88888 5 5 55 2 5 3 66 33333333333 5 5 5 1 66 77 99999 666 2 1 6 88 2
lowQualScore : . . . ............... . ...... . .............. .. ..... ... . . ..... . . ... ..... . .. . . . . .. . . ... . . . . . .. .. . . . . . . ... . . . . . . ..... .. . ... ..... . . .. . . . .. ........... . . . . .. .. ..... ... . . . .. .
lowQualScore : 8 7 3 777777777777777 0 777777 7 33333333333333 99 33333 666 7 7 33333 7 7 000 66666 7 99 7 0 3 7 88 8 0 000 0 0 0 2 0 00 00 0 2 8 8 8 8 000 0 0 0 0 0 6 33333 22 7 666 33333 0 0 11 0 0 6 99 55555555555 0 0 0 6 55 33 33333 888 5 7 7 55 5
consensus : ACAGTACCTGGCCATAAGTGA-GTCATCA-TTTCATTTTTTCCCACT-A-------------TATGTCNTGNNNGAAAACACAATTTTTTTGTAAAAATCTATTGT-A--GA--------TGT--GA-----ATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATTCAAAAA-TTGTTGAAATTTTCTTTTCCT-ATGATTTCTAAACAAATTGTGATGTCAA-GATCTG-AGANAATCGTTTATGAAA-TCA-CC-ATGGCAAGA-TTTTTAACCTCAAAATACTATTACTTTCTTAACAAGTCTATTCCGTAAAATTTCAATATCTG-CATTTGGCCCG-TG-ATTTCACCGCAACACCAAAATATAATATTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-NATGGCCAG
Reference ( family-377 ) : ACAGTACCTGGCCATAAGTGAGGTCATCATTTTCATTTTTTCTCACT-A-------------TATATTTCGNTNGAAAACACAATTTTTTTGTAAAAATCTATTGT-A--GA--------TGT--GA-----ATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATNCAAAAA-TTGTTGAAATTTTCTTTTCCT-ATGATTTCTAAATAAATTGTGATGTCAA-GATCTG-AGAAAATCGTTTATGAAA-TCG-CC-GTGGCAAAA-TTTTTAACCTCAAAATACTATTANTTTCTTAACAAGTCTATTCCGTAAAATTTCAAT-TCTG-CATTTGGCCTG-TG-ATTTCACCGCAACACCAAAATATAATNTTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCANTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-TATGGCCAG
gi|1 : ACAGTACCTGGCCATAAGTGA-GTCATCA-TTTCA-TTTTTCCCACT-ACTGCCTGGTTTTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNTTAAACATTTCTT-T-AT-GAAAATCTATTGT--GATGTGAATTTT-G-T-GA-----C-A-ATTTTT---ATG--A-TT-TTGTCA--CATA-TCATTC-AAAA-TTCCTGAAATATTC-TTTCCC-ATTCTTTTTAAATAAATTGTGATGACAT-GATCTT-AGAAAATAGTTTATGAAA-TCG-TC-ATGACACAA-TTTTCAACCTTAAAATACTA-TAATTTCTTGACAAGTCTATTCCGTAAAATATCAAT-TCTG-CATTTGACCTG-TG-ATTTCACCGCAACACCAAAATATAATTTT-ATTTTGAAA--TCATG-TGAAGAAACTACAAACAAATCTGCA---TTA--ATTGATATG-ATATTCA-GA-AG-AATGATCTACAATAAATGC-TGCAA--T--ACAT------CTT-TTC-AAAAAGGTAC-TTTTCAATGAAA--T--AT-G-TAGTAAAAAAAATAAATGATGACT-CCGT-AATGACC
gi|10 : tCATG-TGAAGAAACTACAAATAATTCTGCA-TATTT--T--GATATT-ATATCCATGA-AA-AATGAGTTATAATGAATGC-TGCAA--TA-Atgttaatgtagattg
gi|11 : -T-TTC-AAAAAGGCAATTTT-CAATGAAA--TGCAT-A-TAGTGAAAAATTGAAATGATGACT-TACG-CATGGCCAG
gi|12 : tATATT-ATATTCATAA-AAAAATGAGCTATAATAAATGC-TGATA--TA-AGTC------T-T-TTC-AAAAataatgta
gi|13 : TTTATATAAAAATTCATTATGA--GA--------TG----A-----ATT-T-A-TTAC-----C-A-ATTTTC---ATA--A-TT-TTTTCA--cgaccg
gi|14 : ACAGTACCTGGCCATAAGTGA-GTCATCA-TTTCATTTTT
gi|15 : tACAGTACCCGGCCATAAGT-AAGTCATCA-TTTCATTTT
gi|16 : tACAGTACCTGGCCATAAGTGA-TTCATCA-TTTCATT
gi|2 : tACA-TACCTGGCCATAAGTGAGGTCATCATTTTCATTTTTTCCCACTCA-------------TATATTTTATTTGAAAACACAATTTTTTTGTAAAAATCTATTGT-A--GA--------TGTTTGA-----ATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCAACCATA-TTATACAAAAAATTGTTTAAATTTTCTTTTCCTTGTGATTTCTAAACAAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAAATCA-CCCATGGCAAGA-TTTTTA-CCTCAAAATACTATTACTTTCTTAAGAAGTCTAT-CTGTAAAATTTCAACATCTGGCAGTTGGCCCGGTG-ATTTCACAGCAACACCAAGATAAAATAACAATTTTGAAAAACCATGGTGAAGAAACTACAAACAATTCTGCAGTTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATACTGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAAATT--AT-ACTAGTGAAAAAATGAAATGATGACTCCACTGGATGGCCAG
gi|3 : TTTTTGTAAAAATCTATTGT----GA--------TGT--GA-----ATT-TGG-T-AC-----CTA-ATTTCC---ATA--A-TT-TTTTCA--CATA-TTATTCATAAA-TTGTTGAAA--TTCTTTTCCT-ATGA--TCTATATGAATTGTGATGTCGATGATCTGTAGAAAA-CGTTTATGAAA-TCACCC-GTAGCCAAATTTTTTAAACTCAAAATACTATTATTCT-TTAACAAATATATTACGTAAAATTTCAAT-TCTG-CATTTGGGCTG-TGAATTTCACCGCAACACC-AAATATAATATTATTTTTGAAA--TCATG-TGAAAGAAATACAAACAATTCTGCA---TTT--TTAGATATTAATATTCATAA-AA-AA-GAGCTATAATGAATGCGTGC-A--TA-A-AT------C-TGTTC-AAAACGG-ACGTTTTCAATGAAA--T--AT-A-T-GTGAAAAAATGAAATGATGACT-CACT-TAT-GCCAG
gi|4 : caaTTTTTGTAAAAATCTATTGT----GA--------TGT--GA-----ATT-T-GGT-AC-----C-A-ATTTTC---AT---AATT-TTTTCA--CATA-TTATACAAAA--TTGTTTAAATTTTCTTTTCCT-GTGATT-CTAAACAAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAA-TCA-CC-ATGGCAAGA-TTTTTAACCTCAAAATACTATTACTT-CTTAAGAAGTCTATTCTGTAAAATTTCAACATCTG-CATTTGGCCCG-TG-ATTTCACAGCAACACCAAAAGATAATAC-AATTTTGAAA--CCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTAGATATT-ATATCCATAA-AA-AAGGATCTATGATGAATGC-TGCAA--TA-AG-T------C-T-TTTAAAAAAGGCatactgt
gi|5 : aaACAGTACCTAGCCATA--TG---TCATCATTT-CATTTTTTC--ACT-A-------------TATGTCATGGGGGAAAACCCCCCATTTTTATGAAAATTTATTGC-ATTAA--------GAT--GA-----ATA-TAG-T-ACATGTAC-ATATTTTCTGAATCAAA-TTATTTTCA--CATAGTCATT--AAAA-TTGTTGAAATTTTCTTTTCAT-ATGA-TGCTAAGCAAATTGTGATGCCA
gi|6 : ctATTTTGAAA--TTATT-TGAAAAATCTGCAAACAATTTTGCA----TT--CTTAAAATG-AGATCTACAATAG-CAC-AGC---AGTAAATGT-TGTTGTTTATAGATTGTTTGC-T-TTC-AAAACAGCATTTCCCCCA--AAA--T--TTCA-TAGTT-AAAAAT-AAATGACGACT-CACC-TAAGACCAG
gi|7 : ttAACAATTCTGCA-TTTATAATATCATATT-TTATGCATAA-AA--ATGAGCTACAAATAACAT-TACAA--TATTTTT------T-T-TTC-ACAATGGC--TTT----ATTGAA--T--AT-A-CA-TGAAAAACTG-AATGA----T-CACT-TATTGCCGGatactatataga
gi|8 : AAAATACTATCA-TTTCTTAACAAATC---------AAATTTCAAT-TCTG-CATTTGGCCTT-TG-ATTTCACCGCAACTTCTACAGATGATATTA-TTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTgtactgta
gi|9 : ACAATTTT--TGTAAAAATCTATCAT----GA--------TGT--GA-----ATTAA-G-T-AC-----C-A-ATTTTC---AT---ATTT-TTTTCA--CACA-TTATTC-TAAA-TTGTTGAAA
Alignments
lowQualScore : 2222 1 1 99999999999999999999999 3333 11111 11111 111 22222 11 111 1 1 1 2 1 2 111 22222222222
lowQualScore : 6 6 8888 3 3 11 333 22222222222222222222222 2222 77 55555 5 44444 5 5 000 99999 5 77 6 3 44 0 88 222 0 0 1 3 0 0 0 3 3 8 0 0 777 0 8 8 8 6 0 0 3 3 99 5 777 88888 5 5 55 2 5 3 66 33333333333 5 5 5 1 6 3 77 99999 666 2 1 6 77 2
lowQualScore : . . .... . . .. ... ....................... .... .. ..... . ..... . . ... ..... . .. . . .. . .. ... . . . . . . . . . . . . ... . . . . . . . . . .. . ... ..... . . .. . . . .. ........... . . . . . . .. ..... ... . . . .. .
lowQualScore : 7 7 7777 3 3 77 000 55555555555555555555555 6666 99 66666 7 33333 7 7 000 66666 7 99 7 2 00 8 88 000 0 0 0 2 0 0 0 2 8 2 8 8 000 4 0 0 0 0 6 8 8 5 22 7 666 33333 0 0 11 0 0 6 99 55555555555 0 0 0 6 6 2 33 33333 888 5 7 7 77 5
consensus : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTTTC--CCACT-ATATG-TTTTGTGTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGT--GAATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATTCAAAAA-TTGTTGAAATTTTCTTTTCCT-ATGATTTCTAAACAAATTGTGATGTCAA-GATCTG-AGANAATCGTTTATGAAA-TCACCCATGGCAAGATTTTT-AACCTCAAAATACTATTACTTTCTTAACAAGTCTATTCCGTAAAATTTCAATATCTG-CATTTGGCCCG-TG-ATTTCACCGCAACACCAAAATATAATATTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-NATGGCCAG
Reference ( family-377 ) : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTTTC--CCACT-ATATG-TCNTGNNNGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGT--GAATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATTCAAAAA-TTGTTGAAATTTTCTTTTCCT-ATGATTTCTAAACAAATTGTGATGTCAA-GATCTG-AGANAATCGTTTATGAAA-TCACC-ATGGCAAGATTTTT-AACCTCAAAATACTATTACTTTCTTAACAAGTCTATTCCGTAAAATTTCAATATCTG-CATTTGGCCCG-TG-ATTTCACCGCAACACCAAAATATAATATTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-NATGGCCAG
gi|1 : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTTCCCACTACT-GCCTGGTTTTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNTTAAACATTTCTTTATGAAAATCTATTGT----GATGT--GAATT-TTG-T-GA-----C-A-ATTTTT---ATG--A-TT-TTGTCA--CATA-TCATTCAAAA--TTCCTGAAATATTCTTTCCC--ATTCTTTTTAAATAAATTGTGATGACAT-GATCTT-AGAAAATAGTTTATGAAA-TCGTC-ATGACACAATTTTC-AACCTTAAAATACTAT-AATTTCTTGACAAGTCTATTCCGTAAAATATCAAT-TCTG-CATTTGACCTG-TG-ATTTCACCGCAACACCAAAATATAAT-TTTATTTTGAAA--TCATG-TGAAGAAACTACAAACAAATCTGCA---TTA--ATTGATATG-ATATTCA-GA-AG-AATGATCTACAATAAATGC-TGCAA--T--ACAT------CTT-TTC-AAAAAGGTAC-TTTTCAATGAAA--T--AT-G-TAGTAAAAAAAATAAATGATGACT-CCGT-AATGACC
gi|10 : tCATG-TGAAGAAACTACAAATAATTCTGCA-TATTT--T--GATATT-ATATCCATGA-AA-AATGAGTTATAATGAATGC-TGCAA--TA-Atgttaatgtagattg
gi|11 : -T-TTC-AAAAAGGCAATTTT-CAATGAAA--TGCAT-A-TAGTGAAAAATTGAAATGATGACT-TACG-CATGGCCAG
gi|12 : tATATT-ATATTCATAA-AAAAATGAGCTATAATAAATGC-TGATA--TA-AGTC------T-T-TTC-AAAAataatgta
gi|13 : TTTATATAAAAATTCATTATGA--GATG----AATT-T-A-TTAC-----C-A-ATTTTC---ATA--A-TT-TTTTCA--cgaccg
gi|14 : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTT
gi|15 : tACAGTACCCGGCCATAAGTAAG-TCATCATTT-CATTTT
gi|16 : tACAGTACCTGGCCATAAGTGAT-TCATCATTT-CATT
gi|2 : tACA-TACCTGGCCATAAGTGAGGTCATCATTTTCATTTTTTC--CCACTCATATA-TTTTATTTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGTTTGAATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCAACCATA-TTATACAAAAAATTGTTTAAATTTTCTTTTCCTTGTGATTTCTAAACAAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAAATCACCCATGGCAAGATTTTT-A-CCTCAAAATACTATTACTTTCTTAAGAAGTCTAT-CTGTAAAATTTCAACATCTGGCAGTTGGCCCGGTG-ATTTCACAGCAACACCAAGATAAAATAACAATTTTGAAAAACCATGGTGAAGAAACTACAAACAATTCTGCAGTTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATACTGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAAATT--AT-ACTAGTGAAAAAATGAAATGATGACTCCACTGGATGGCCAG
gi|3 : TTTTTGTAAAAATCTATTGT----GATGT--GAATT-T-GGT-AC-----CTA-ATTTCC---AT---AATT-TTTTCA--CATA-TTATTCATAAA-TTGTTGAAATT--CTTTTCCT-ATGAT--CTATATGAATTGTGATGTCGATGATCTGTAGAAAA-CGTTTATGAAA-TCACCCGTAGCCAAATTTTTTAAACTCAAAATACTATTATTCT-TTAACAAATATATTACGTAAAATTTCAAT-TCTG-CATTTGGGCTG-TGAATTTCACCGCAACACC-AAATATAATATTATTTTTGAAA--TCATG-TGAAAGAAATACAAACAATTCTGCA---TTT--TTAGATATTAATATTCATAA-AA-AA-GAGCTATAATGAATGCGTGC-A--TA-A-AT------C-TGTTC-AAAACGG-ACGTTTTCAATGAAA--T--AT-A-T-GTGAAAAAATGAAATGATGACT-CACT-TAT-GCCAG
gi|4 : caaTTTTTGTAAAAATCTATTGT----GATGT--GAATT-T-GGT-AC-----C-A-ATTTTC---AT---AATT-TTTTCA--CATA-TTATACAAAA--TTGTTTAAATTTTCTTTTCCT-GTGATT-CTAAACAAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAA-TCACC-ATGGCAAGATTTTT-AACCTCAAAATACTATTACTT-CTTAAGAAGTCTATTCTGTAAAATTTCAACATCTG-CATTTGGCCCG-TG-ATTTCACAGCAACACCAAAAGATAATAC-AATTTTGAAA--CCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTAGATATT-ATATCCATAA-AA-AAGGATCTATGATGAATGC-TGCAA--TA-AG-T------C-T-TTTAAAAAAGGCatactgt
gi|5 : aaACAGTACCTAGCCATA--TG---TCATCATTT-CATTTTTTC----ACT-ATATG-TCATGGGGGAAAACCCC-----------------------CCATTTTTATGAAAATTTATTGC-ATTAAGAT--GAATA-TAG-T-ACATGTAC-ATATTTTCTGAATCAAA-TTATTTTCA--CATAGTCATT--AAAA-TTGTTGAAATTTTCTTTTCAT-ATGA-TGCTAAGCAAATTGTGATGCCA
gi|6 : ctATTTTGAAA--TTATT-TGAAAAATCTGCAAACAATTTTGCA----TT--CTTAAAATG-AGATCTACAATAG-CAC-AGC---AGTAAATGT-TGTTGTTTATAGATTGTTTGC-T-TTC-AAAACAGCATTTCCCCCA--AAA--T--TTCA-TAGTT-AAAAAT-AAATGACGACT-CACC-TAAGACCAG
gi|7 : ttAACAATTCTGCA-TTTATAATATCATATT-TTATGCATAA-AA--ATGAGCTACAAATAACAT-TACAA--TATTTTT------T-T-TTC-ACAATGG--CTTT----ATTGAA--T--AT-A-CA-TGAAAAACTG-AATGA----T-CACT-TATTGCCGGatactatataga
gi|8 : AAAATACTATCA-TTTCTTAACAAATC---------AAATTTCAAT-TCTG-CATTTGGCCTT-TG-ATTTCACCGCAACTTCTACAGATGATATTA-TTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTgtactgta
gi|9 : ACA-----------------------ATTTT--TGTAAAAATCTATCAT----GATGT--GAATTAA-G-T-AC-----C-A-ATTTTC---AT---ATTT-TTTTCA--CACA-TTATTC-TAAA-TTGTTGAAA
Alignments
lowQualScore : 222222222 99999999999999999999999 3333 11111 11111 111 22222 11 111 1 1 1 1 1 2 111 22222222222
lowQualScore : 6 6 7 6 444444444 22222222222222222222222 2222 77 55555 5 44444 5 5 000 99999 5 77 6 3 44 0 88 222 0 0 1 3 0 5 0 3 3 8 0 0 777 0 8 8 8 6 0 0 3 3 99 5 777 88888 5 5 55 2 5 3 66 33333333333 5 5 5 1 6 3 77 99999 666 2 1 6 77 2
lowQualScore : . . . . ......... ....................... .... .. ..... . ..... . . ... ..... . .. . . .. . .. ... . . . . . . . . . . . . ... . . . . . . . . . .. . ... ..... . . .. . . . .. ........... . . . . . . .. ..... ... . . . .. .
lowQualScore : 7 7 3 7 000000000 55555555555555555555555 6666 99 66666 7 33333 7 7 000 66666 7 99 7 2 00 8 88 000 0 0 0 2 0 0 0 2 8 2 8 8 000 4 0 0 0 0 6 8 8 5 22 7 666 33333 0 0 11 0 0 6 99 55555555555 0 0 0 6 6 2 33 33333 888 5 7 7 77 5
consensus : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTTTCCCACT-A-TAC---GTTTTGTGTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGT--GAATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATTCAAAAA-TTGTTGAAATTTTCTTTTCCT-ATGATTTCTAAACAAATTGTGATGTCAA-GATCTG-AGANAATCGTTTATGAAA-TCACCCATGGCAAGATTTTT-AACCTCAAAATACTATTACTTTCTTAACAAGTCTATTCCGTAAAATTTCAATATCTG-CATTTGGCCCG-TG-ATTTCACCGCAACACCAAAATATAATATTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-NATGGCCAG
Reference ( family-377 ) : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTTTCCCACT-A-TAT---GTTTTGTGTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGT--GAATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATTCAAAAA-TTGTTGAAATTTTCTTTTCCT-ATGATTTCTAAACAAATTGTGATGTCAA-GATCTG-AGANAATCGTTTATGAAA-TCACCCATGGCAAGATTTTT-AACCTCAAAATACTATTACTTTCTTAACAAGTCTATTCCGTAAAATTTCAATATCTG-CATTTGGCCCG-TG-ATTTCACCGCAACACCAAAATATAATATTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-NATGGCCAG
gi|1 : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTT-CCCACT-ACTGCCTGGTTTTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNTTAAACATTTCTTTATGAAAATCTATTGT----GATGT--GAATT-TTG-T-GA-----C-A-ATTTTT---ATG--A-TT-TTGTCA--CATA-TCATTCAAAA--TTCCTGAAATATTCTTTCCC--ATTCTTTTTAAATAAATTGTGATGACAT-GATCTT-AGAAAATAGTTTATGAAA-TCGTC-ATGACACAATTTTC-AACCTTAAAATACTAT-AATTTCTTGACAAGTCTATTCCGTAAAATATCAAT-TCTG-CATTTGACCTG-TG-ATTTCACCGCAACACCAAAATATAAT-TTTATTTTGAAA--TCATG-TGAAGAAACTACAAACAAATCTGCA---TTA--ATTGATATG-ATATTCA-GA-AG-AATGATCTACAATAAATGC-TGCAA--T--ACAT------CTT-TTC-AAAAAGGTAC-TTTTCAATGAAA--T--AT-G-TAGTAAAAAAAATAAATGATGACT-CCGT-AATGACC
gi|10 : tCATG-TGAAGAAACTACAAATAATTCTGCA-TATTT--T--GATATT-ATATCCATGA-AA-AATGAGTTATAATGAATGC-TGCAA--TA-Atgttaatgtagattg
gi|11 : -T-TTC-AAAAAGGCAATTTT-CAATGAAA--TGCAT-A-TAGTGAAAAATTGAAATGATGACT-TACG-CATGGCCAG
gi|12 : tATATT-ATATTCATAA-AAAAATGAGCTATAATAAATGC-TGATA--TA-AGTC------T-T-TTC-AAAAataatgta
gi|13 : TTTATATAAAAATTCATTATGA--GATG----AATT-T-A-TTAC-----C-A-ATTTTC---ATA--A-TT-TTTTCA--cgaccg
gi|14 : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTT
gi|15 : tACAGTACCCGGCCATAAGTAAG-TCATCATTT-CATTTT
gi|16 : tACAGTACCTGGCCATAAGTGAT-TCATCATTT-CATT
gi|2 : tACA-TACCTGGCCATAAGTGAGGTCATCATTTTCATTTTTTCCCACTCA-TAT---ATTTTATTTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGTTTGAATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCAACCATA-TTATACAAAAAATTGTTTAAATTTTCTTTTCCTTGTGATTTCTAAACAAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAAATCACCCATGGCAAGATTTTT-A-CCTCAAAATACTATTACTTTCTTAAGAAGTCTAT-CTGTAAAATTTCAACATCTGGCAGTTGGCCCGGTG-ATTTCACAGCAACACCAAGATAAAATAACAATTTTGAAAAACCATGGTGAAGAAACTACAAACAATTCTGCAGTTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATACTGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAAATT--AT-ACTAGTGAAAAAATGAAATGATGACTCCACTGGATGGCCAG
gi|3 : TTTTTGTAAAAATCTATTGT----GATGT--GAATT-T-GGT-AC-----CTA-ATTTCC---AT---AATT-TTTTCA--CATA-TTATTCATAAA-TTGTTGAAATT--CTTTTCCT-ATGAT--CTATATGAATTGTGATGTCGATGATCTGTAGAAAA-CGTTTATGAAA-TCACCCGTAGCCAAATTTTTTAAACTCAAAATACTATTATTCT-TTAACAAATATATTACGTAAAATTTCAAT-TCTG-CATTTGGGCTG-TGAATTTCACCGCAACACC-AAATATAATATTATTTTTGAAA--TCATG-TGAAAGAAATACAAACAATTCTGCA---TTT--TTAGATATTAATATTCATAA-AA-AA-GAGCTATAATGAATGCGTGC-A--TA-A-AT------C-TGTTC-AAAACGG-ACGTTTTCAATGAAA--T--AT-A-T-GTGAAAAAATGAAATGATGACT-CACT-TAT-GCCAG
gi|4 : caaTTTTTGTAAAAATCTATTGT----GATGT--GAATT-T-GGT-AC-----C-A-ATTTTC---AT---AATT-TTTTCA--CATA-TTATACAAAA--TTGTTTAAATTTTCTTTTCCT-GTGATT-CTAAACAAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAA-TCACC-ATGGCAAGATTTTT-AACCTCAAAATACTATTACTT-CTTAAGAAGTCTATTCTGTAAAATTTCAACATCTG-CATTTGGCCCG-TG-ATTTCACAGCAACACCAAAAGATAATAC-AATTTTGAAA--CCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTAGATATT-ATATCCATAA-AA-AAGGATCTATGATGAATGC-TGCAA--TA-AG-T------C-T-TTTAAAAAAGGCatactgt
gi|5 : aaACAGTACCTAGCCATA--TG---TCATCATTT-CATTTTTTC--ACT-A-TAT---GTCATGGGGGAAAACCCC-----------------------CCATTTTTATGAAAATTTATTGC-ATTAAGAT--GAATA-TAG-T-ACATGTAC-ATATTTTCTGAATCAAA-TTATTTTCA--CATAGTCATT--AAAA-TTGTTGAAATTTTCTTTTCAT-ATGA-TGCTAAGCAAATTGTGATGCCA
gi|6 : ctATTTTGAAA--TTATT-TGAAAAATCTGCAAACAATTTTGCA----TT--CTTAAAATG-AGATCTACAATAG-CAC-AGC---AGTAAATGT-TGTTGTTTATAGATTGTTTGC-T-TTC-AAAACAGCATTTCCCCCA--AAA--T--TTCA-TAGTT-AAAAAT-AAATGACGACT-CACC-TAAGACCAG
gi|7 : ttAACAATTCTGCA-TTTATAATATCATATT-TTATGCATAA-AA--ATGAGCTACAAATAACAT-TACAA--TATTTTT------T-T-TTC-ACAATGG--CTTT----ATTGAA--T--AT-A-CA-TGAAAAACTG-AATGA----T-CACT-TATTGCCGGatactatataga
gi|8 : AAAATACTATCA-TTTCTTAACAAATC---------AAATTTCAAT-TCTG-CATTTGGCCTT-TG-ATTTCACCGCAACTTCTACAGATGATATTA-TTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTgtactgta
gi|9 : ACA-----------------------ATTTT--TGTAAAAATCTATCAT----GATGT--GAATTAA-G-T-AC-----C-A-ATTTTC---AT---ATTT-TTTTCA--CACA-TTATTC-TAAA-TTGTTGAAA
Alignments
lowQualScore : 222222222 99999999999999999999999 3333 11111 11111 111 22222 11 111 1 1 1 1 1 2 111 22222222222
lowQualScore : 6 6 7 6 888888888 22222222222222222222222 2222 77 55555 5 44444 5 5 000 99999 5 77 6 3 44 0 88 222 0 0 1 3 0 5 0 3 3 8 0 0 777 0 8 8 8 6 0 0 3 3 99 5 777 88888 5 5 55 2 5 3 66 33333333333 5 5 5 1 6 3 77 99999 666 2 1 6 77 2
lowQualScore : . . . . ......... ....................... .... .. ..... . ..... . . ... ..... . .. . . .. . .. ... . . . . . . . . . . . . ... . . . . . . . . . .. . ... ..... . . .. . . . .. ........... . . . . . . .. ..... ... . . . .. .
lowQualScore : 7 7 3 7 777777777 55555555555555555555555 6666 99 66666 7 33333 7 7 000 66666 7 99 7 2 00 8 88 000 0 0 0 2 0 0 0 2 8 2 8 8 000 4 0 0 0 0 6 8 8 5 22 7 666 33333 0 0 11 0 0 6 99 55555555555 0 0 0 6 6 2 33 33333 888 5 7 7 77 5
consensus : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTTTCCCACT-A-TAC---GTTTTGTGTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGT--GAATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATTCAAAAA-TTGTTGAAATTTTCTTTTCCT-ATGATTTCTAAACAAATTGTGATGTCAA-GATCTG-AGANAATCGTTTATGAAA-TCACCCATGGCAAGATTTTT-AACCTCAAAATACTATTACTTTCTTAACAAGTCTATTCCGTAAAATTTCAATATCTG-CATTTGGCCCG-TG-ATTTCACCGCAACACCAAAATATAATATTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-NATGGCCAG
Reference ( family-377 ) : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTTTCCCACT-A-TAC---GTTTTGTGTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGT--GAATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATTCAAAAA-TTGTTGAAATTTTCTTTTCCT-ATGATTTCTAAACAAATTGTGATGTCAA-GATCTG-AGANAATCGTTTATGAAA-TCACCCATGGCAAGATTTTT-AACCTCAAAATACTATTACTTTCTTAACAAGTCTATTCCGTAAAATTTCAATATCTG-CATTTGGCCCG-TG-ATTTCACCGCAACACCAAAATATAATATTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-NATGGCCAG
gi|1 : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTT-CCCACT-ACTGCCTGGTTTTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNTTAAACATTTCTTTATGAAAATCTATTGT----GATGT--GAATT-TTG-T-GA-----C-A-ATTTTT---ATG--A-TT-TTGTCA--CATA-TCATTCAAAA--TTCCTGAAATATTCTTTCCC--ATTCTTTTTAAATAAATTGTGATGACAT-GATCTT-AGAAAATAGTTTATGAAA-TCGTC-ATGACACAATTTTC-AACCTTAAAATACTAT-AATTTCTTGACAAGTCTATTCCGTAAAATATCAAT-TCTG-CATTTGACCTG-TG-ATTTCACCGCAACACCAAAATATAAT-TTTATTTTGAAA--TCATG-TGAAGAAACTACAAACAAATCTGCA---TTA--ATTGATATG-ATATTCA-GA-AG-AATGATCTACAATAAATGC-TGCAA--T--ACAT------CTT-TTC-AAAAAGGTAC-TTTTCAATGAAA--T--AT-G-TAGTAAAAAAAATAAATGATGACT-CCGT-AATGACC
gi|10 : tCATG-TGAAGAAACTACAAATAATTCTGCA-TATTT--T--GATATT-ATATCCATGA-AA-AATGAGTTATAATGAATGC-TGCAA--TA-Atgttaatgtagattg
gi|11 : -T-TTC-AAAAAGGCAATTTT-CAATGAAA--TGCAT-A-TAGTGAAAAATTGAAATGATGACT-TACG-CATGGCCAG
gi|12 : tATATT-ATATTCATAA-AAAAATGAGCTATAATAAATGC-TGATA--TA-AGTC------T-T-TTC-AAAAataatgta
gi|13 : TTTATATAAAAATTCATTATGA--GATG----AATT-T-A-TTAC-----C-A-ATTTTC---ATA--A-TT-TTTTCA--cgaccg
gi|14 : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTT
gi|15 : tACAGTACCCGGCCATAAGTAAG-TCATCATTT-CATTTT
gi|16 : tACAGTACCTGGCCATAAGTGAT-TCATCATTT-CATT
gi|2 : tACA-TACCTGGCCATAAGTGAGGTCATCATTTTCATTTTTTCCCACTCA-TAT---ATTTTATTTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGTTTGAATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCAACCATA-TTATACAAAAAATTGTTTAAATTTTCTTTTCCTTGTGATTTCTAAACAAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAAATCACCCATGGCAAGATTTTT-A-CCTCAAAATACTATTACTTTCTTAAGAAGTCTAT-CTGTAAAATTTCAACATCTGGCAGTTGGCCCGGTG-ATTTCACAGCAACACCAAGATAAAATAACAATTTTGAAAAACCATGGTGAAGAAACTACAAACAATTCTGCAGTTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATACTGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAAATT--AT-ACTAGTGAAAAAATGAAATGATGACTCCACTGGATGGCCAG
gi|3 : TTTTTGTAAAAATCTATTGT----GATGT--GAATT-T-GGT-AC-----CTA-ATTTCC---AT---AATT-TTTTCA--CATA-TTATTCATAAA-TTGTTGAAATT--CTTTTCCT-ATGAT--CTATATGAATTGTGATGTCGATGATCTGTAGAAAA-CGTTTATGAAA-TCACCCGTAGCCAAATTTTTTAAACTCAAAATACTATTATTCT-TTAACAAATATATTACGTAAAATTTCAAT-TCTG-CATTTGGGCTG-TGAATTTCACCGCAACACC-AAATATAATATTATTTTTGAAA--TCATG-TGAAAGAAATACAAACAATTCTGCA---TTT--TTAGATATTAATATTCATAA-AA-AA-GAGCTATAATGAATGCGTGC-A--TA-A-AT------C-TGTTC-AAAACGG-ACGTTTTCAATGAAA--T--AT-A-T-GTGAAAAAATGAAATGATGACT-CACT-TAT-GCCAG
gi|4 : caaTTTTTGTAAAAATCTATTGT----GATGT--GAATT-T-GGT-AC-----C-A-ATTTTC---AT---AATT-TTTTCA--CATA-TTATACAAAA--TTGTTTAAATTTTCTTTTCCT-GTGATT-CTAAACAAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAA-TCACC-ATGGCAAGATTTTT-AACCTCAAAATACTATTACTT-CTTAAGAAGTCTATTCTGTAAAATTTCAACATCTG-CATTTGGCCCG-TG-ATTTCACAGCAACACCAAAAGATAATAC-AATTTTGAAA--CCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTAGATATT-ATATCCATAA-AA-AAGGATCTATGATGAATGC-TGCAA--TA-AG-T------C-T-TTTAAAAAAGGCatactgt
gi|5 : aaACAGTACCTAGCCATA--TG---TCATCATTT-CATTTTTTC--ACT-A-TAT---GTCATGGGGGAAAACCCC-----------------------CCATTTTTATGAAAATTTATTGC-ATTAAGAT--GAATA-TAG-T-ACATGTAC-ATATTTTCTGAATCAAA-TTATTTTCA--CATAGTCATT--AAAA-TTGTTGAAATTTTCTTTTCAT-ATGA-TGCTAAGCAAATTGTGATGCCA
gi|6 : ctATTTTGAAA--TTATT-TGAAAAATCTGCAAACAATTTTGCA----TT--CTTAAAATG-AGATCTACAATAG-CAC-AGC---AGTAAATGT-TGTTGTTTATAGATTGTTTGC-T-TTC-AAAACAGCATTTCCCCCA--AAA--T--TTCA-TAGTT-AAAAAT-AAATGACGACT-CACC-TAAGACCAG
gi|7 : ttAACAATTCTGCA-TTTATAATATCATATT-TTATGCATAA-AA--ATGAGCTACAAATAACAT-TACAA--TATTTTT------T-T-TTC-ACAATGG--CTTT----ATTGAA--T--AT-A-CA-TGAAAAACTG-AATGA----T-CACT-TATTGCCGGatactatataga
gi|8 : AAAATACTATCA-TTTCTTAACAAATC---------AAATTTCAAT-TCTG-CATTTGGCCTT-TG-ATTTCACCGCAACTTCTACAGATGATATTA-TTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTgtactgta
gi|9 : ACA-----------------------ATTTT--TGTAAAAATCTATCAT----GATGT--GAATTAA-G-T-AC-----C-A-ATTTTC---AT---ATTT-TTTTCA--CACA-TTATTC-TAAA-TTGTTGAAA
blockSeqs : G T T C CATAT . ATT TT TGG T ATGTA T T TGA CAAA A AC G A AA TT TTT T T C T A C T A T C TAC A G G A A C A AA G GTT AATAT A T AA T G A TT TAGATTGTTTG . G A A C T TT TGC AC G T C GG G
blockSeqs : . . T . ATAT . GA . TGG . . . . . AA . . . A A T TT . . A T . C . A T T TCT A . . . A T T . . TA TTT . . A T . T . TTTTT . . . A C T TT ATT CA G T . C G
blockSeqs : . . . A . TAG . . . . . AA . . . A A T TG . . C . . . . . T C CT . . . . T T A . . TT TTA . . A T . A . AGTC . . . C C G CC T A G T . T G
blockSeqs : . . . . AAG . . . . . AA . . . . A T T C . . . . . . . . A . . TT TTA . . A G . A . AGAT . . . A C T T T A G C . T T
blockSeqs : . . . . TA . . . . . AT . . . . . . . . TT CTT . . A C . T . AAT . . . C . T . T A . . . T .
blockSeqs : . . TG . . . . . A . . . . T . . C T . A . AGT . . . T .
blockSeqs : . . . . . . . . . . .
blockSeqCons : A* T* TT* TT* AGNT*******
originalCons : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTTTCCCACT-A-TAC---GTTTTGTGTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGT--GAATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATTCAAAAA-TTGTTGAAATTTTCTTTTCCT-ATGATTTCTAAACAAATTGTGATGTCAA-GATCTG-AGANAATCGTTTATGAAA-TCACCCATGGCAAGATTTTT-AACCTCAAAATACTATTACTTTCTTAACAAGTCTATTCCGTAAAATTTCAATATCTG-CATTTGGCCCG-TG-ATTTCACCGCAACACCAAAATATAATATTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TGCAA--TA-AGAT------C-T-TTC-AAAAAGGCACTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-NATGGCCAG
finalCons : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTTTCCCACT-A-TAC---GTTTTGTGTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGT--GAATT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATTCAAAAA-TTGTTGAAATTTTCTTTTCCT-ATGATT-CTAAACAAATTGTGATGTCAA-GATCTG-AGANAATCGTTTATGAAA-TCACCCATGGCAAGATTTTT-AACCTCAAAATACTATTACTTTCTTAACAAGTCTATTCCGTAAAATTTCAATATCTG-CATTTGGCCCG-TG-ATTTCACCGCAACACCAAAATATAATATTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCATT-TTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TGCAA--TAAGNT-------C-T-TTC-AAAAAGGCACTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-NATGGCCAG
Alignments
lowQualScore : 222222222 99999999999999999999999 3333 1 11111 111 22222 1 111 2222222 1 1 1 1 2 111 1111 2222222222
lowQualScore : 6 6 7 6 888888888 22222222222222222222222 2222 77 5 666 1 5 44444 5 5 000 99999 5 77 6 1 6 0 000 0000000 0 0 1 3 0 2 2 0 3 0 8 0 0 777 0 8 8 8 6 0 0 3 3 99 5 777 88888 5 5 55 2 5 0000 3 2222222222 5 1 6 3 77 99999 666 2 1 6 77 2
lowQualScore : . . . . ......... ....................... .... .. . ... . . ..... . . ... ..... . .. . . . . ... ....... . . . . . . . . . . . . . ... . . . . . . . . . .. . ... ..... . . .. . . .... . .......... . . . . .. ..... ... . . . .. .
lowQualScore : 7 7 3 7 777777777 55555555555555555555555 6666 99 7 111 4 7 33333 7 7 000 66666 7 99 7 3 7 8 666 6666666 0 0 0 2 0 5 5 0 2 8 2 8 8 000 4 0 0 0 0 6 8 8 5 22 7 666 33333 0 0 11 0 0 6666 6 1111111111 0 6 6 2 33 33333 888 5 7 7 77 5
consensus : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTTTCCCACT-A-TAC---GTTTTGTGTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGT--GAA-TT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATTCAAAAA-TTGTTGAAATTTTCTTTTCCT-GTGATT-C----TAAACAAATTGTGATGTCAA-GATCTG-AGANAATCGTTTATGAAA-TCACCCATGGCAAGATTTTT-AACCTCAAAATACTATTACTTTCTTAACAAGTCTATTCCGTAAAATTTCAATATCTG-CATTTGGCCCG-TG-ATTTCACCGCAACACCAAAATATAATATTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TG----CAATA-AGTC-----CT-TTCAAAAAGGCACTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-NATGGCCAG
Reference ( family-377 ) : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTTTCCCACT-A-TAC---GTTTTGTGTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGT--GAA-TT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCA--CATA-TTATTCAAAAA-TTGTTGAAATTTTCTTTTCCT-ATGATT-C----TAAACAAATTGTGATGTCAA-GATCTG-AGANAATCGTTTATGAAA-TCACCCATGGCAAGATTTTT-AACCTCAAAATACTATTACTTTCTTAACAAGTCTATTCCGTAAAATTTCAATATCTG-CATTTGGCCCG-TG-ATTTCACCGCAACACCAAAATATAATATTAATTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATAATGAATGC-TG----CAATA-AGNT-----CT-TTCAAAAAGGCACTTTTTCAATGAAA--T--AT-A-TAGTGAAAAAATGAAATGATGACT-CACT-NATGGCCAG
gi|1 : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTT-CCCACT-ACTGCCTGGTTTTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNTTAAACATTTCTTTATGAAAATCTATTGT----GATGT--GAATTT-T-G-T-GA-----C-A-ATTTTT---ATG--A-TT-TTGTCA--CATA-TCATTC-AAAA-TTCCTGAAATATTCTTTCCC-----ATT-CTTTTTAAATAAATTGTGATGACAT-GATCTT-AGAAAATAGTTTATGAAA-TCG-TCATGACACAATTTTC-AACCTTAAAATACTA-TAATTTCTTGACAAGTCTATTCCGTAAAATATCAAT-TCTG-CATTTGACCTG-TG-ATTTCACCGCAACACCAAAATATAAT-TTTATTTTGAAA--TCATG-TGAAGAAACTACAAACAAATCTGCA---TTA--ATTGATATG-ATATTCA-GA-AG-AATGATCTACAATAAATGC-TG----CAATA-CATC-----TT-TTCAAAAAGGTAC-TTTTCAATGAAA--T--AT-G-TAGTAAAAAAAATAAATGATGACT-CCGT-AATGACC
gi|10 : tCATG-TGAAGAAACTACAAATAATTCTGCA-TATTT--T--GATATT-ATATCCATGA-AA-AATGAGTTATAATGAATGC-TG----CAATA-Atgttaatgtagattg
gi|11 : T-TTCAAAAAGGCAATTTT-CAATGAAA--TGCAT-A-TAGTGAAAAATTGAAATGATGACT-TACG-CATGGCCAG
gi|12 : tATATT-ATATTCATAA-AAAAATGAGCTATAATAAATGC-TG----ATATA-AGTC-----TT-TTCAAAAataatgta
gi|13 : TTTATATAAAAATTCATTATGA--GATG----AA-TT-T-A-TTAC-----C-A-ATTTTC---ATA--A-TT-TTTTCA--cgaccg
gi|14 : ACAGTACCTGGCCATAAGTGAG-TCATCATTT-CATTTTT
gi|15 : tACAGTACCCGGCCATAAGTAAG-TCATCATTT-CATTTT
gi|16 : tACAGTACCTGGCCATAAGTGAT-TCATCATTT-CATT
gi|2 : tACA-TACCTGGCCATAAGTGAGGTCATCATTTTCATTTTTTCCCACTCA-TAT---ATTTTATTTGAAAACACA-----------------------ATTTTTTTGTAAAAATCTATTGT-A--GATGTTTGAA-TT-T-G-T-AC-----C-A-ATTTTC---AT---A-TT-TTTTCAACCATA-TTATACAAAAAATTGTTTAAATTTTCTTTTCCTTGTGATTTC----TAAACAAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAAATCACCCATGGCAAGATTTTT-A-CCTCAAAATACTATTACTTTCTTAAGAAGTCTAT-CTGTAAAATTTCAACATCTGGCAGTTGGCCCGGTG-ATTTCACAGCAACACCAAGATAAAATAACAATTTTGAAAAACCATGGTGAAGAAACTACAAACAATTCTGCAGTTTTT--TTTGATATT-ATATCCATAA-AA-AATGAGCTATACTGAATGC-TG----CAATA-AGAT-----CT-TTCAAAAAGGCACTTTTTCAATGAAAATT--AT-ACTAGTGAAAAAATGAAATGATGACTCCACTGGATGGCCAG
gi|3 : TTTTTGTAAAAATCTATTGT----GATGT--GAA-TT-T-GGT-AC-----CTA-ATTTCC---AT---AATT-TTTTCA--CATA-TTATTCATAAA-TTGTTGAAATT--CTTTTCCT-ATGAT--C----TATATGAATTGTGATGTCGATGATCTGTAGAAAA-CGTTTATGAAA-TCACCCGTAGCCAAATTTTTTAAACTCAAAATACTATTATTCT-TTAACAAATATATTACGTAAAATTTCAAT-TCTG-CATTTGGGCTG-TGAATTTCACCGCAACACC-AAATATAATATTATTTTTGAAA--TCATG-TGAAAGAAATACAAACAATTCTGCA---TTT--TTAGATATTAATATTCATAA-AA-AA-GAGCTATAATGAATGCGTG----C-ATA-A-AT-----CTGTTCAAAACGG-ACGTTTTCAATGAAA--T--AT-A-T-GTGAAAAAATGAAATGATGACT-CACT-TAT-GCCAG
gi|4 : caaTTTTTGTAAAAATCTATTGT----GATGT--GAA-TT-T-GGT-AC-----C-A-ATTTTC---AT---AATT-TTTTCA--CATA-TTATACAAAA--TTGTTTAAATTTTCTTTTCCT-GTGATT-C----TAAACAAATTGTAATGTCAA-GATCTG-AGACAATCGTTTATGAAA-TCACC-ATGGCAAGATTTTT-AACCTCAAAATACTATTACTT-CTTAAGAAGTCTATTCTGTAAAATTTCAACATCTG-CATTTGGCCCG-TG-ATTTCACAGCAACACCAAAAGATAATAC-AATTTTGAAA--CCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTT--TTAGATATT-ATATCCATAA-AA-AAGGATCTATGATGAATGC-TG----CAATA-AGTC-----TT-TTAAAAAAGGCatactgt
gi|5 : aaACAGTACCTAGCCATA--TG---TCATCATTT-CATTTTTTC--ACT-A-TAT---GTCATGGGGGAAAACCCC-----------------------CCATTTTTATGAAAATTTATTGC-ATTAAGAT--GAA-TA-TAG-T-ACATGTAC-ATATTTTCTGAATCAAA-TTATTTTCA--CATAGTCATT--AAAA-TTGTTGAAATTTTCTTTTCAT-ATGATG-C----TAAGCAAATTGTGATGCCA
gi|6 : ctATTTTGAAA--TTATT-TGAAAAATCTGCAAACAATTTTGCA----TT--CTTAAAATG-AGATCTACAATAG-CAC-AGC---AGTAAATGT-TGTTGTTTATA-GATTGTTTGCT-TTCAAAACAGCATTTCCCCCA--AAA--T--TTCA-TAGTT-AAAAAT-AAATGACGACT-CACC-TAAGACCAG
gi|7 : ttAACAATTCTGCA-TTTATAATATCATATT-TTATGCATAA-AA--ATGAGCTACAAATAACAT-TA----CAATATTTTT-----TT-TTCACAATGG--CTTT----ATTGAA--T--AT-A-CA-TGAAAAACTG-AATGA----T-CACT-TATTGCCGGatactatataga
gi|8 : AAAATACTATCA-TTTCTTAACAAATC---------AAATTTCAAT-TCTG-CATTTGGCCTT-TG-ATTTCACCGCAACTTCTACAGATGATATTA-TTTTGAAA--TCATG-TGAAGAAACTACAAACAATTCTGCA-TTTTgtactgta
gi|9 : ACA-----------------------ATTTT--TGTAAAAATCTATCAT----GATGT--GAA-TTAA-G-T-AC-----C-A-ATTTTC---AT---ATTT-TTTTCA--CACA-TTATTC-TAAA-TTGTTGAAA