lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222222222222222222
lowQualScore : 111 1111 11 11 888888888888888888888888 11 1 111111 22222 1 1 333333333 4444444444 11 111111 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 33333333333333333333333 22222 3333333333333 33333333333333333333 111 1 111111111 1 3333333 1 333333333333333 3333333333333333333 11111 555555 33333333 11 1111 1 11 111 3333 22 333333333
lowQualScore : 222 8 9999 11 11 333333333333333333333333 6 99 99 5 5 5 5 0 7 444444 77 5 5 88888 6 77 6 5 2 6 77 1 000000000 9999999999 555 5 66 5 5 5 5 666666 1 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 6 666 88888888888888888888888 3 55555 7777777777777 66666666666666666666 1 3 1 111 7 8 1 00 5 5 111111111 1 0000000 5 5 1 4 66 66 5 9 5 777 444444444444444 4 66 2222222222222222222 5 6 99 99 99 8 22222 222222 2 6 1 77777777 1 8 8 11 4444 3 7 7 3 88 6 0 444 6666 3 00 888888888
lowQualScore : ... . .... .. .. ........................ . .. .. . . . . . . ...... .. . . ..... . .. . . . . .. . ......... .......... ... . .. . . . . ...... . . ......................................................................................................................................................... . . ... ....................... . ..... ............. .................... . . . ... . . . .. . . ......... . ....... . . . . .. .. . . . ... ............... . .. ................... . . .. .. .. . ..... ...... . . . ........ . . . .. .... . . . . .. . . ... .... . .. .........
lowQualScore : 888 0 2222 00 00 999999999999999999999999 6 66 00 0 0 0 0 2 6 444444 22 0 0 22222 7 44 4 7 7 0 11 0 777777777 0000000000 999 7 66 7 7 7 7 444444 1 4 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 7 222 22222222222222222222222 3 88888 0000000000000 22222222222222222222 8 7 0 222 3 0 7 44 0 0 666666666 9 6666666 0 0 4 5 99 99 0 4 0 888 222222222222222 4 11 4444444444444444444 7 7 22 22 22 0 00000 000000 2 0 4 00000000 4 0 0 00 5555 2 0 3 3 33 0 7 000 0000 0 00 555555555
consensus : GTGTAAN-TATC-A-CGNTC--TT--GTAAAAA-T-GTA--AT-AC--TATNAT---ATGACAGTC-AAT-TTTAG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CA-T--NATCAAAAAGGC-TNTTT-CGCGTAGGCGAAAAA-TCGCTACATTC-AAAA--GGATGTG-TGTATGTATAGTT-A-ACG-GACAGTCA-C-AAG-AT-ATA------CACTCAGG----------TTGAAA-TCT-T-------AA----------------GT----------------AA----G----AA--TGT-GT-C-AATTTA-------------GTA-------------------TG-----------------A--AATA-ATAA-CTTCAT-CCTGGCGTTT---CA-TA---T---GTTACTCGGTTTGTTTACTTTGTT-----TTGAA-----TA------AAGTTTACTTGTGTCGCAGAAANNC-CAATANATTTGCCAAAGAGAATTCACA-TACAGTTTNATAAGGTATTTTACA-T-C--A-GTG--TAGGGAAT-------T-TT-ATAGTGTACAATAT--CGTA--TTGAAGTGC-ATCTTTTGCC-GCT---TT-GTCC--GC--TTTGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTT--TAC-TTAGAAGACAGTGCTGGTTTAATATA--------TCTAAAAT-GTA-TGGA--TGATC--GATGTTCATGTTGCTCATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATAGCGGAATACTCTTCATTGGNAGNTTTAATATACTCAAAGGCGAGCTGAATA
Reference ( gi|2 ) : GTGTAAT-TATC-A-CAATC--TT--GTAAAAA-T-GTA--AT-ACAGTATAAT---ATGATAGTT-AAT-CTTAG-TAAACA-GT-TCCTGCATT------GTTTTT-A-CA-T--AGTCAAAATGGT-TATTT-CGCGTTGGCGAAAAA-TCGCTACATTCCATAA--GGATGTGATGTATATATAGTT-A-ATG-GACACTCA-C-AAG-AT-ATA------CATTCCGG----------TTG----------------AA----------------GT----------------AA----G----GA--TGT-GT-C-AGTTTA-------------GTA-------------------TG-----------------A--GATA-ATAA-CTTCAT-TTTGGCGTTT---CATTA---T---GTTACACAGTTTGTTTACTTTGCT-----TTGAA-----TA------AAGTTT--------------------CAATATATTTGCCAAAGAGAATTTATA-TACAGCTTAATAAGGTATTTTACA-T-C--A-GTG--TAGGGCAT-------T-TT-ATAGTGTACAATAT--CGTA--TTGAAGTGC-ATCATTTGCC-GCT---TT-ATCT--GC--GTTAGTGT-TGC--CATGG---------ATAT------C-AATATG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTT--T---TTAGAAGATAGTACTGGTTTAATATA--------TCTAAAAT-GTA-TGGA--TGATC--AGTGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTAAAAATATGGTGAAATATTTGTCATTAGAATTTTTAATATACTCAAAAGCAAGTTGAATA
gi|6 : GTGTCAA-TATC-AACATTC--TTTGGTAAAAA-A-ATT--AT-TTATTTT--T---ATGACAGTT-AAT--TTAG-TAAAAA-GT-TCTTTCATT------GTTTTTTA-CA-T--TACCAAAAAGGC-TTTTT-CGTGTT--CGG-------GCTA------AT----GGATGTGTTGTATA----GTT-ATATG-GACAGGCAAC-AAG-GT-ATATATGTACATTCAGG----------TTG----------------AA----------------ATTCTCTGTTAAGCAAATAA----G----AA--TGT-GT-C-AATTTA-------------GTG-------------------TGGCAAATACGAAATCGTGA--AATA-ATAA-CTTCAT-CCTGGCGCTT---CAGTA---TAATGTTGCTCGGTTTGTTTACTTTGTT-----TTGAA-----TA------GAGT
gi|8 : cataacacaagttgttgtaacatgtattataaaataccgggtatttcagatttttTGTAATATATCTA-TGATN--TT--GTAAAAA-TTGTA--AT-A-----TAAT---ATGATAATC-ATT-TTTAG-TAAAAAAGT-TACTGCATT------GTTTTT-A-CA-T--TGTCAAAAAGGT-TATTT-CGCGTAGGCAAAAAA-TCACAACATTCCAAAA--GGATGTGATG----TATAGTT-A-ATG-GACACTCA-C-AAG-AT-ATA------CATTCCGG----------CTGAAATTCTCTGTTAAACAA----------------GT----------------AA----G----AA--TGT-GT-C-AATTTATTATGACCAATACGTAATCG---------------TG-----------------A--AATA-ATAA-CTTCAT-CCTGGCGTTT---CA-----------TTACACGGTTTGTTTACTTTGTT-----TTGAA-----TA------aa
gi|9 : ccacattcttgtaaaaatGTAAA-TATC-A-CCATTCATT--GTAAAAA-T-------T----GTATGATTCAATGACAGTC-AATTCTGAG-TAAAAA-GAATCCTTAATT------GTTTTA-A-CA-T--CA-CAAAAAGGCCTGTTT-CGTGTAGGCGAAAAA-TCGCTACATTCAA-AA--GGATGTG-TGTA-----AGTTAA-AGG-GACAGACA-C-AAGAAT-ATA------CACTCAGG----------TTGAAATTCTCTGTT----AA----------------GT----------------AA----GTAA-GA--TGTGGT-C-AATTTA-------------GTA-------------------T
gi|13 : ttataaaacgtgtaaaggttaaaagtaaaacaaagtgttgtgcataaacagttgtacattgtatatccaagtaatttttcagattttgGTAAT--ATC-A-T--TC--TT--GTAAAA-----TA--GT-ATTTTATCGG---TTGA-AGTC-AAT-TTTAG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CA-T--At
gi|7 : aaaacgttgtaaaatagttaaaagaaacaaagtgtgtgcataagccgtttgtacattgtagtattaaatatttagtttttgtg-TATC-A-CATTC--TT--GTAAAAAGT-GTATGATTACA-TGTA-T---ATGATTGTC-AAT-ATTTG-TTAAAA-TT-ACATGCATT------GCTTGC-A-CA-T--TATGAAAAGGAC-CATTT-CGATTGGGTGAAAGA-----TACAT--------------------------AGTA-C-ATC-GACA-GCA-C-AAG-AT-ATA------CAATTGGGCAGACGTTCTTTGTT--------------AA----------------GC----------------AAATACG----AA--TAT-GT-CTAGTTT--------------GAA-------------------TG-----------------ACCGATCTATCA-CTTCGT-CTTGGCATTT---CA-TA---T---G-------GTTTGTGTACTTTGTTCAGAATAGAA-----TG------AAGTTT--------------------ccaag
gi|3 : tgtattttgaacagcttggcgtgttaagatttttctggatacatataTAAAAA-TTGTA---T--C--TATTAT---ATGACAGTCCAATTCCTAGGTAAAAA-GT-CCGTTCATTAGAAAAGTTTAT-AACA-TTCA-CCAAGAAGGC-TGTTTTCGTGT-GGCGAAAAAATCGCTACATTCCAAAAAAGTATGTGGT---TGTATAGTT-A-ACAAGACAGTCA-CGAAG-ATTATA------CACTCAGG----------TTA----------------AATTCTCTGTTAA-----GT----------------AA----ATAGAGAATTGT-GTGC-AATTTA-------------GTACTGTCCAATACTGTAATCATG-----------------AA-GATA-ATAAACTTCATGCCTGACGTTTGA-TATTA---T---GT-ACTCGGCTTGTTTACTTTGTTCG---TTGAA-----TAGGAGTAAAGTTTACTTGTGTCGCAGAAAATTCCAATATATT-GCTAGAGAGAATTTACAATACAG-TTAG-AAGGTATTTTACAAT-C--AAGTGAATAGGGAAT-------T-TT-ATGGT--ACAATATTTCGTA--TTGAacttgtgtcacagaaagcctaatgtattt
gi|4 : ttaaaaacggtgtaaaaggttgaaaggaacaagagttatggccgataaacagttaatatacattgtttatttatgtagatatttttcagatttttgttgtaaaaatatatcacatttctaaatagaaGTATG-T---ATGACAGAC-AAT-TTTAG-TAAAAA-GC-TTTTTCATT------GTTTT--A-CAAT--A-TGAAAAAGGC-TTTTT-CATGTAGGCGTAAAA-TCGCTTTATTCGAAAA--GGATGTGTTGTA-GTATAGTT-A-ACG-GAGAGTTA-C-AAG-AT-ACA------CATTCAGC----------TTGAAAATCTGTT------AA----------------GC----------------AA----G----AA--TGT-GT-C-AGTTTA-------------ACATGGCCAATACGTTGTCG--TG-----------------A--AATA-AAAA-CTTAAT-CCTGGCGTTT---CAGTACGTC---GTTATTCGGTTTGTTTACTTAGCT-----TTGAATAGAGTA------AAGTTTACTTGTGTCGCAAAAATAC-CAACATACTTGCCAAAGAGAATTTATA-TATAATTTCATAAAGTATTTGACA-TAC--A---A--AAAGGCATCTATACAT-CT-ATAGTGTACAATGT--CG-----TGA--------CTTTTGCC-GCT---T-----------------TGT-TGC--CATGG---------ATA-------C-AATA
gi|15 : atataaattattagaagaaaatgtttgtgacagcaatattgatgaattttgtaataaaaagcaagagattagacaaaataagctacaagatatG-TAAAAA-GT-TCCTACATT------GTTTTT-A-CA-T--GATCAAAAAGGT-TTTTT-CGCGTGGGCGAAAAA-TCGCTccgagatggctt
gi|1 : ataaatcgcatacattggataaattggataacctaaaatcacgagaatttnnnnnnnnnnnnnnnnnnnnTGTATAGTT-A-ATG-GACAGTCA-C-AAA-AT-ATA------CACTCAGG----------TTG----------------AAATTCTCTGTTAAGGAAGT----------------AA----G----AA--TGT-GT-C-AATTTA-------------GCA-------------------TGTCCAATACGTAATCGTGA--AATA-ATAA-CTTCAT-CCTGTCGTTTGAGTATTA---T---GTTACTCGGCTTGTTTACCTTGTT-----CTGAA-----TAGAACA-AAGTTTACTTGTGTCGCAGACACCC-CAATACACTTGCCAAAGAGAACCCACA-TACAGTTTTATAAGGTATTTTACA-T-C--A-GTG--TTGGG-AT-------TCCT-ACACTGTACAATAT--CGTA--TTGAAGTGC-ATCCTTCGCC-GCC---TT-GTCC--GC--CCCGGTGC-TGC--CATGGACACCAATCATGC------C-AATGTG-ACCCGGAAT--CCAGCAGAACT--CAACTA--TTT-CA--C--CTTGTTCAC---CCAGAAGACAGTGCTGGTTCAATATA--------TCTAAAAT-GCA-TGGA--TGATC--AACGTTCATGTTGCTCACCGACTGTAGACAAGATACTAG--AGCCTGAAAACATGGCAAAATATTTTTCATTGGAAAATTTAATATACTCAAAAGCGAGCTGAATA
gi|10 : gtAAAATATTTGCCAA-GAGAATTTACA-TACAGTTTTATTAGGTATTTTACA-T-C--A-GTA--TAGGGAAT-------T-TTTATAGTGTACAATAT--CGTA--TCGAAGTGC-ATCTTTTACT-GCT---TT-G-------------GTGT-TGC--CATGG---------ATACATGTACC-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAATTA--TTT-TA--C--CTTGTT--TAC-TTAGAAGGTAGTGCTGGTTTAATATACAAATGTATCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTCACTGTAGACAAGATA-GGG--AGTCTGAAAATATAG-GGAATAgctcctgcctcggctgtacaaattgttgcctcgttcggaacacatcatgctctactgtatcactgcaacgaccctattttggtccttcgatccgtctgtataaatatcaatcgtagaatgtttggcccgtttcacctcgaagaatttttgtttgaaaacagcgggatttgtttcagacttcctacattcagaaagtgatgcgtccaccttaggttttactaattt
gi|14 : AATAGATTTGCTAAAGAAAATTCAAG-TAGAGTTTTATGAAATATTTCGAG-T-C--A-AAG--TATGGGAT-------T-AT-AAAATTTACAGTGT--CATA--TTGAAATGC-ATCTTTTGCC-GTT---TT-GTCT--GC--TTTGGTGT-TGC--CATGG---------ATAcatctt
gi|5 : agagccccaATAAATTTGC-GAAGC-AATTCG-A-TACAG---AACA--TTATTTT-CA-T-TTTA-ATG--AAAGACATAGCTGT-T-TT-ATA-CATA-AACAT--AGTACATTGTAGT-------TTT--C-GCTGAATT-GCCT--GC--TGTGGCGT-TGT--CAAGG---------ATAC------C-AATATT-ACTTGCAAT--CTAGCAGAAT------CTA--TCTATA--CATCTTGTT--TGG-TTCGTA-ATAGTGCTATTGTAAAATT--------TCTATATT-GTA-TGTA--TGATT--GATA-TCATATTGCTCATTGACTTTAGACAAAA-A-GGGGAAGTCTGTGAATATAGTAGAATGCTC----TTAGCAGTTTT---------AAAGGCAAATTGAAT
gi|18 : atTATTTAAGA-T-C--A-TTA--TAGGGAAT-------T-TT-ATAGCGTACAATAT--TGTA--TTGAAATGC-ATCTATTGCC-GCT---TT-GCCT--TC--TTTGGTGT-TGC--TATtaataacatttgcgtcggtggtgaaaagtgttatctcagtctgaaatcgttaaaagaaaacattgtttgtgactaccagtactgctgcagcaacaactttattttgaactttcgacgcgcatctagcaatataatttctaaaatgct
gi|17 : tttattaggtacatacaA-T-C--T-GTA--TAGGAAAT-------T-TT-ATAGTTTACAATAT--CGTA--TTGAAGTGC-ATCTTTTGCC-GCT---GT-GTCT--GC--TTTGGTGT-TGC------------------------------TATG-ACTTGGAAT--CCAGCAGAACT--AAACTA--
gi|12 : TAAAGTGCCATC-TTTGCCTACT---TTTGTCTTTGCTTGTTGGTGTGTGCAACATG----------ATAC------CCAGTGTGGACTTGGAATTCCCAGCAGAATTACCAGATAGCTTT-TAGGC--TGCGTT--TACTTTAGAAGAAAGTGCTGGTTTAATATAG-------TCGAAAATGGTATTGGAGGTGATCAAAATGTTCATGTTGCTTA-TGACTGTAGAC
gi|16 : tgtcgtatgaaggtgaCT---TT-GTCC--GT--TTTAGTGT-TGC--CATGG---------ATAC------C-AATATG-ACTTTGAAT--CCAGCAGAAGT--CAACTA--TTT-TA--C--CTTGTT--TAC-TTATAAGACAATGCTAGCTTAAACTA--------TCTGAATT-GCA-AGGA--T
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GTATAAATTGTTGCCTCATTAGGAAGGCATATAGAGAAAACGTCGTTTTTGATTACTTCATTAGCAATGCCTGTATCTTATTTAAACAATTTGTGTAAATCCCAATAATGGAATGTGTTGTTTTAATTGGATTTTTTTTTTTGCTTAAATACAAATGAATTGGTTTTAGATTTCTTACATTCAAAAAATGATGTGTCTACTTTGGGTTTTATCCATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 11 22222 44444444444444444444444444444 111111 1 222222222 333333 111111 888888888888888888888 1111 22222 555555555555555555555555555555555555555555555555555555 444444444444 11111 444444 11 11111111111111 111 111111111 1111111 22222222 111 1 11 1 1
lowQualScore : 55 6 00000 6 99 77777777777777777777777777777 2 5 777 4 4 4 1 222222 4 4 99 1 5 1 5 1 0 5 66 888888888 666666 5 5 3 5 3 5 5 5 5 444444 1 5 2 999999999999999999999 0000 33333 888 5 5 5 5 555555555555555555555555555555555555555555555555555555 8888 5 5 5 444444444444 5 1 77 44444 555555 0 8 0 77 1 0 11 0 44 4 66 4 4 1 66 0 88888888888888 4 5 66 66 4 4 4 1 000 55 4 55 777777777 5555555 5 5 77 77 77 6 99 99 1 6 2 44444444 6 6 6 99 333 0 3 3 0 33 0 0 9 0 1 44 7 0 0 0
lowQualScore : .. . ..... . .. ............................. . . ... . . . . ...... . . .. . . . . . . . .. ......... ...... . . . . . . . . . ...... . . . ..................... .... ..... ... . . . . ...................................................... .... . . . ............ . . .. ..... ...... . . . .. . . .. . .. . .. . . . .. . .............. . . .. .. . . . . ... .. . .. ......... ....... . . .. .. .. . .. .. . . . ........ . . . .. ... . . . . .. . . . . . .. . . . .
lowQualScore : 55 7 22222 7 22 00000000000000000000000000000 2 0 111 4 4 4 9 888888 4 4 88 4 0 0 0 1 2 0 99 444444444 555555 0 0 1 0 4 0 0 0 0 444444 1 0 2 999999999999999999999 6666 11111 888 0 0 0 0 888888888888888888888888888888888888888888888888888888 9999 7 7 7 000000000000 7 9 99 33333 000000 8 0 6 66 0 9 00 1 44 4 11 4 4 9 11 7 22222222222222 4 7 11 11 4 4 0 3 111 55 0 55 888888888 8888888 0 7 99 99 99 7 22 22 7 7 2 22222222 7 7 7 22 888 8 8 2 0 88 5 0 2 7 0 77 3 7 7 7
consensus : GTGTAAN-TATC-A-C-ATTC-TT--GTAAAAA-T-GTA--AT-AC--TATN-AT---A---TGACAGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CATT-ATCAAAAAGGC-TNTTT-CGCGTAGGCGAAAAA-TCG--CTACATT-C---AA-AAGGATGTG-TGTATGTATAGTT-A-ACG-GACAGTCA-C-AAG-AT-ATA------CACTCAGGTTG-AAATTCT-TGT----T---------AAG----TAA-----G---AAT-GT-GT-C-AATTTA-------------GTA-------------------TG-----------------A--A-ATA-ATAA-CTTCAT-CCTGGCGTTTCAG---T-A---T-GT-TACTCGGTTTGTTTACTTTGTT--TTGAA-----TAG-A---AAGTTTACTTGTGTCGCAG-AAATCCCAATATATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-A--T-C-AGTG--TAGGGAA------T-------TTT-ATAGTGTACAATA--TCGT--ATTGAAGTGC-ATCTTTTGCC-GCTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGATAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATGGCGGAATAC-TCTTCATTAGAANTTTTAATATACTCAAAAGCGAGTTGAATA
Reference ( family-374 ) : GTGTAAN-TATC-A-C-GNTC-TT--GTAAAAA-T-GTA--AT-AC--TATN-AT---A---TGACAGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CATN-ATCAAAAAGGC-TNTTT-CGCGTAGGCGAAAAA-TCG--CTACATT-C---AA-AAGGATGTG-TGTATGTATAGTT-A-ACG-GACAGTCA-C-AAG-AT-ATA------CACTCAGGTTG-AAATC-----T----T---------AAG----TAA-----G---AAT-GT-GT-C-AATTTA-------------GTA-------------------TG-----------------A--A-ATA-ATAA-CTTCAT-CCTGGCGTTTCA----T-A---T-GT-TACTCGGTTTGTTTACTTTGTT--TTGAA-----TA------AAGTTTACTTGTGTCGCAG-AAANNCCAATANATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-A--T-C-AGTG--TAGGGAA------T-------TTT-ATAGTGTACAATA--TCGT--ATTGAAGTGC-ATCTTTTGCC-GCTTT-GTCC--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGACAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--GATGTTCATGTTGCTCATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATAGCGGAATAC-TCTTCATTGGNAGNTTTAATATACTCAAAGGCGAGCTGAATA
gi|1 : TGTATAGTT-A-ATG-GACAGTCA-C-AAA-AT-ATA------CACTCAGGTTG-AAATT-----C----TCTGTTAAGGAAG----TAA-----G---AAT-GT-GT-C-AATTTA-------------GCA-------------------TGTCCAATACGTAATCGTGA--A-ATA-ATAA-CTTCAT-CCTGTCGTTTGAGTATT-A---T-GT-TACTCGGCTTGTTTACCTTGTT--CTGAA-----TAGAACA-AAGTTTACTTGTGTCGCAG-ACACCCCAATACACTTGCCAAAGAGAACCCAC-ATACAGTTTTATAAGGTATTTTAC-A--T-C-AGTG--TTGGGAT------T-------CCT-ACACTGTACAATA--TCGT--ATTGAAGTGC-ATCCTTCGCC-GCCTT-GTCC--GCCC--CGGTGC-TGC--CATGGACACCAATCATGC------C-AATGTG-ACCCGGAAT--CCAGCAGAACT--CAACTA--TTT-CA--C--CTTGTTCACCC-AGAAGACAGTGCTGGTTCAATA--------TA-TCTAAAAT-GCA-TGGA--TGATC--AACGTTCATGTTGCTCACCGACTGTAGACAAGATACTAG--AGCCTGAAAACATGGCAAAATAT-TTTTCATTGGAAAATTTAATATACTCAAAAGCGAGCTGAATA
gi|10 : gtAAAATATTTGCCAA-GAGAATTTAC-ATACAGTTTTATTAGGTATTTTAC-A--T-C-AGTA--TAGGGAA------T-------TTTTATAGTGTACAATA--TCGT--ATCGAAGTGC-ATCTTTTACT-GCTTT-G-------------GTGT-TGC--CATGG---------ATACATGTACC-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAATTA--TTT-TA--C--CTTGTTTACTT-AGAAGGTAGTGCTGGTTTAATATACAAATGTA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTCACTGTAGACAAGATA-GGG--AGTCTGAAAATATAG-GGAATACATCTTgctcctgcctcggctgtacaaattgttgcctcgttcggaacacatcatgctctactgtatcactgcaacgaccctattttggtccttcgatccgtctgtataaatatcaatcgtagaatgtttggcccgtttcacctcgaagaatttttgtttgaaaacagcgggatttgtttcagacttcctacattcagaaagtgatgcgtccaccttaggttttactaattt
gi|12 : TAAAGTGCCATCTTT-GCCTACTTTTGTCTTTGCTTGTTGGTGTGTGCAACATG----------ATAC------CCAGTGTGGACTTGGAATTCCCAGCAGAATTACCAGATAGCTTT-TAGGC--TGCGTTTACTTTAGAAGAAAGTGCTGGTTTAATA--------TAGTCGAAAATGGTATTGGAGGTGATCAAAATGTTCATGTTGCTTA-TGACTGTAGAC
gi|13 : tgtcgtatgaaggtgaGTAA--TATC-A----TTC-TT--GTAAAA-----TA--GT-AT--T-TT-AT---CGGTTGA-AGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CAT--ACCAA
gi|14 : aaaacgttgtaaaatagttaaaagaaacaaagtgtgtgcataagccgtttgtacattgtagtattaaatatttagtttttgtgAATAGATTTGCTAAAGAAAATTCAA-GTAGAGTTTTATGAAATATTTCGA-G--T-C-AAAG--TATGGGA------T-------TAT-AAAATTTACAGTG--TCAT--ATTGAAATGC-ATCTTTTGCC-GTTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAg
gi|15 : agagccccaG-TAAAAA-GT-TCCTACATT------GTTTTT-A-CATG-ATCAAAAAGGT-TTTTT-CGCGTGGGCGAAAAA-TCG--CT
gi|16 : ataaatcgcatacattggataaattggataacctaaaatcacgagaatttnnnnnnnnnnnnnnnnnnnnCTTT-GTCC--GTTT--TAGTGT-TGC--CATGG---------ATAC------C-AATATG-ACTTTGAAT--CCAGCAGAAGT--CAACTA--TTT-TA--C--CTTGTTTACTT-ATAAGACAATGCTAGCTTAAAC--------TA-TCTGAATT-GCA-AGGA--T
gi|17 : gcaaaatgcat-A--T-C-TGTA--TAGGAAA------T-------TTT-ATAGTTTACAATA--TCGT--ATTGAAGTGC-ATCTTTTGCC-GCTGT-GTCT--GCTT--TGGTGT-TGC------------------------------TATG-ACTTGGAAT--CCAGCAGAACT--AAACTA--
gi|18 : TATTTAAG-A--T-C-ATTA--TAGGGAA------T-------TTT-ATAGCGTACAATA--TTGT--ATTGAAATGC-ATCTATTGCC-GCTTT-GCCT--TCTT--TGGTGT-TGC--TAT
gi|2 : tttattaggtacatacaGTGTAAT-TATC-A-C-AATC-TT--GTAAAAA-T-GTA--AT-ACAGTATA-AT---A---TGATAGTT-AATCT-T-AG-TAAACA-GT-TCCTGCATT------GTTTTT-A-CATA-GTCAAAATGGT-TATTT-CGCGTTGGCGAAAAA-TCG--CTACATT-C---CATAAGGATGTGATGTATATATAGTT-A-ATG-GACACTCA-C-AAG-AT-ATA------CATTCCGGTTG-AA-------------------------G----TAA-----G---GAT-GT-GT-C-AGTTTA-------------GTA-------------------TG-----------------A--G-ATA-ATAA-CTTCAT-TTTGGCGTTTCA----TTA---T-GT-TACACAGTTTGTTTACTTTGCT--TTGAA-----TA------AAGTTT--------------------CAATATATTTGCCAAAGAGAATTTAT-ATACAGCTTAATAAGGTATTTTAC-A--T-C-AGTG--TAGGGCA------T-------TTT-ATAGTGTACAATA--TCGT--ATTGAAGTGC-ATCATTTGCC-GCTTT-ATCT--GCGT--TAGTGT-TGC--CATGG---------ATAT------C-AATATG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTT--TT-AGAAGATAGTACTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AGTGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTAAAAATATGGTGAAATAT-TTGTCATTAGAATTTTTAATATACTCAAAAGCAAGTTGAATA
gi|3 : TAAAAA-TTGTA---T--C--TATT-AT---A---TGACAGTCCAATTCCT-AGGTAAAAA-GT-CCGTTCATTAGAAAAGTTTAT-AACATTCACCAAGAAGGC-TGTTTTCGTGT-GGCGAAAAAATCG--CTACATT-CCAAAA-AAGTATGTG--GT-TGTATAGTT-A-ACAAGACAGTCA-CGAAG-ATTATA------CACTCAGGTTA-AATTC-----TCTGTT---------AAG----TAAATAGAG---AATTGT-GTGC-AATTTA-------------GTACTGTCCAATACTGTAATCATG-----------------A--AGATA-ATAAACTTCATGCCTGACGTTTGA----T-A---TTATGTACTCGGCTTGTTTACTTTGTTCGTTGAA-----TAGGAGTAAAGTTTACTTGTGTCGCAGAAAATTCCAATATA-TTGCTAGAGAGAATTTACAATACAGTT--AGAAGGTATTTTACAA--T-CAAGTGAATAGGGAA------T-------TTT-ATG--GTACAATATTTCGT--ATTGA
gi|4 : ttaaaaacggtgtaaaaggttgaaaggaacaagagttatggccgataaacagttaatatacattgtttatttatgtagatatttttcagatttttgttgtaaaaatatatcacatttctaaatagaa--TATG--T---A---TGACAGAC-AATTT-T-AG-TAAAAA-GC-TTTTTCATT------G-TTTT-A-CAAT-ATGAAAAAGGC-TTTTT-CATGTAGGCGTAAAA-TCG--CTTTATT-CG--AA-AAGGATGTGTTGTA-GTATAGTT-A-ACG-GAGAGTTA-C-AAG-AT-ACA------CATTCAGCTTGAAAATCTG---T----T---------AAG----CAA-----G---AAT-GT-GT-C-AGTTTA-------------ACATGGCCAATACGTTGTCG--TG-----------------A--A-ATA-AAAA-CTTAAT-CCTGGCGTTTCAG---T-ACGTC-GT-TATTCGGTTTGTTTACTTAGCT--TTGAATAGAGTA------AAGTTTACTTGTGTCGCAA-AAATACCAACATACTTGCCAAAGAGAATTTAT-ATATAATTTCATAAAGTATTTGAC-A--TAC-A--A--AAAGGCA------TCTATACATCT-ATAGTGTACAATG--TCG-----TGA--------CTTTTGCC-GCTT-----------------TGT-TGC--CATGG---------ATA-------C-AAT
gi|5 : atataaattattagaagaaaatgtttgtgacagcaatattgatgaattttgtaataaaaagcaagagattagacaaaataagctacaagatatgATAAATTTG-CGAAG-CAATTCG--ATACAG---AACA--TTATTTT-C-ATTT-T-AATG--AAAGACATAGCTGT-------TTT-ATA-CATA-AACA--TAGTACATTGTAGT------TTTCGCT-GAATT-GCCT--GCTG--TGGCGT-TGT--CAAGG---------ATAC------C-AATATT-ACTTGCAAT--CTAGCAGAAT------CTA--TCTATA--CATCTTGTTTGGTT-CGTA-ATAGTGCTATTGTAAAA--------TT-TCTATATT-GTA-TGTA--TGATT--GATA-TCATATTGCTCATTGACTTTAGACAAAA-A-GGGGAAGTCTGTGAATATAGTAGAATGC-TC----TTAGCAGTTTT---------AAAGGCAAATTGAATaccgagatggctt
gi|6 : atGTGTCAA-TATC-AAC-ATTC-TTTGGTAAAAA-A-ATT--AT--T--TATT-TTT--A---TGACAGTT-AATTT---AG-TAAAAA-GT-TCTTTCATT------GTTTTTTA-CATT-ACCAAAAAGGC-TTTTT-CGTGT-----------TCGGGCTA-AT-----------GGATGTG-T---TGTATAGTT-ATATG-GACAGGCAAC-AAG-GT-ATATATGTACATTCAGGTTG-AAATTCTCTGT----T---------AAGCAAATAA-----G---AAT-GT-GT-C-AATTTA-------------GTG-------------------TGGCAAATACGAAATCGTGA--A-ATA-ATAA-CTTCAT-CCTGGCGCTTCAGTA-T-AA--T-GT-TGCTCGGTTTGTTTACTTTGTT--TTGAA-----TA------GAGTtaataacatttgcgtcggtggtgaaaagtgttatctcagtctgaaatcgttaaaagaaaacattgtttgtgactaccagtactgctgcagcaacaactttattttgaactttcgacgcgcatctagcaatataatttctaaaatgct
gi|7 : cataacacaagttgttgtaacatgtattataaaataccgggtatttcagattttt-TATC-A-C-ATTC-TT--GTAAAAAGT-GTATGATTAC---ATGTAT---A---TGATTGTC-AATAT-T-TG-TTAAAA-TT-ACATGCATT------GCTTGC-A-CATT-ATGAAAAGGAC-CATTT-CGATTGGGTGAAAGA-------TACAT----------------------------AGTA-C-ATC-GACAG-CA-C-AAG-AT-ATA------CAATTGGGCAG-ACGTTCTTTGT----T---------AAG----CAAATAC-G---AAT-AT-GT-CTAGTTT--------------GAA-------------------TG-----------------ACCG-ATCTATCA-CTTCGT-CTTGGCATTTCA----T-A---T-G--------GTTTGTGTACTTTGTT--CAGAA-----TAGAATG-AAGTTTACTTGTGTCACAG-AAAGCCTAATGTATTTaa
gi|8 : tgtattttgaacagcttggcgtgttaagatttttctggatacatataTGTAATATATCTA-T-GATN-TT--GTAAAAA-TTGTA--AT-A-----TA-AT---A---TGATAATC-ATTTT-T-AG-TAAAAAAGT-TACTGCATT------GTTTTT-A-CATT-GTCAAAAAGGT-TATTT-CGCGTAGGCAAAAAA-TCA--CAACATTCC---AA-AAGGATGTG----ATGTATAGTT-A-ATG-GACACTCA-C-AAG-AT-ATA------CATTCCGGCTG-AAATT-----C----TCTGTTAAACAAG----TAA-----G---AAT-GT-GT-C-AATTTATTATGACCAATACGTAATCG---------------TG-----------------A--A-ATA-ATAA-CTTCAT-CCTGGCGTTTCA-------------T-TACACGGTTTGTTTACTTTGTT--TTGAA-----TA------
gi|9 : ccacattcttgtaaaaatGTAAA-TATC-A-CCATTCATT--GTAAAAA-T-------T-G---TATG-ATTCAA---TGACAGTC-AATTC-TGAG-TAAAAA-GAATCCTTAATT------GTTTTA-A-CATC-A-CAAAAAGGCCTGTTT-CGTGTAGGCGAAAAA-TCG--CTACATT-C---AA-AAGGATGTG-TGTA-----AGTTAA-AGG-GACAGACA-C-AAGAAT-ATA------CACTCAGGTTG-AAATTCTCTGT----T---------AAG----TAA-----GTAAGAT-GTGGT-C-AATTTA-------------GTA-------------------T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTATAAATTGTTGCCTCATTAGGAAGGCATATAGAGAAAACGTCGTTTTTGATTACTTCATTAGCAATGCCTGTATCTTATTTAAACAATTTGTGTAAATCCCAATAATGGAATGTGTTGTTTTAATTGGATTTTTTTTTTTGCTTAAATACAAATGAATTGGTTTTAGATTTCTTACATTCAAAAAATGATGTGTCTACTTTGGGTTTTATCCATCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 111 1111111111 44444444444444444444444444444 111111 1 222222222 333333 111111 22 1111 2222 22222 55555555555555555555555555555555555555555555555555555555555555555555555 2222222222222 333333333 11 11 2222222 111111111 1111111 22222222 11 1 11 1 1
lowQualScore : 55555 000 77 5 8888888888 77777777777777777777777777777 2 5 777 4 4 4 1 222222 4 4 4 1 5 1 5 1 0 5 66 888888888 666666 5 5 3 5 3 5 5 999999 5 1 55 5 0000 1111 33333 888 5 5 5 5 00000000000000000000000000000000000000000000000000000000000000000000000 8888 5 5 5 77 6666666666666 1 1 77 999999999 0 777777 0 1 11 0 44 4 4 00 1 66 0 7777777 4 5 66 66 4 4 4 55 55 4 55 777777777 5555555 5 5 77 77 77 6 99 99 1 6 0 44444444 6 6 6 99 11 0 3 3 0 33 0 0 9 1 7 0
lowQualScore : ..... ... .. . .......... ............................. . . ... . . . . ...... . . . . . . . . . . .. ......... ...... . . . . . . . ...... . . .. . .... .... ..... ... . . . . ....................................................................... .... . . . .. ............. . . .. ......... . ...... . . .. . .. . . .. . .. . ....... . . .. .. . . . .. .. . .. ......... ....... . . .. .. .. . .. .. . . . ........ . . . .. .. . . . . .. . . . . . .
lowQualScore : 44444 999 99 7 7777777777 00000000000000000000000000000 2 0 111 4 4 4 9 888888 4 4 4 4 0 0 0 1 2 0 99 444444444 555555 0 0 1 0 4 0 0 444444 0 1 11 0 6666 2222 11111 888 0 0 0 0 77777777777777777777777777777777777777777777777777777777777777777777777 9999 7 7 7 99 9999999999999 4 9 99 888888888 8 222222 9 7 00 1 44 4 4 66 9 11 7 2222222 4 7 11 11 4 4 0 55 55 0 55 888888888 8888888 0 7 99 99 99 7 22 22 7 7 3 22222222 7 7 7 22 00 8 8 2 0 88 5 0 2 0 3 7
consensus : GTGTAAA----TATCA-C-AT--TC-TT--G-------TAAAAA-T-GTA--AT-AC--TATN-AT---A---TGACAGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------G-TTTTTA-CATT-ATCAAAAAGGC-TNTTT-CGCGTAGGCGAAAAA-TC--GCTACATT-C---AA-AAGGATGTG-TGTATGTATAGTT-A-ACG-GACAGTC-AC-AAG------AT-ATACACTCAGGTTGAAATTCTCT-GTT----AAG----TAA-----G---AAT-GT-GT-C-AATTTA-------------GT-----------------A-------------------TG-----------------A--A-ATA-ATAA-CTTCAT-CCTGGCGTTT--CAGT---A---T---GTTACTCGGTTTGTTTACTTTGTT--TTGAATAG----AA--AAGTTTACTTGTGTCGCAG-AAACCCCAATATATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-AT-C--AGTG--TAGGGAAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGATAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATGGCGGAATAC-TCTTCATTAGAANTTTTAATATACTCAAAAGCGAGTTGAATA
Reference ( family-374 ) : GTGTAAN----TATCA-C-AT--TC-TT--G-------TAAAAA-T-GTA--AT-AC--TATN-AT---A---TGACAGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------G-TTTTTA-CATT-ATCAAAAAGGC-TNTTT-CGCGTAGGCGAAAAA-TC--GCTACATT-C---AA-AAGGATGTG-TGTATGTATAGTT-A-ACG-GACAGTC-AC-AAG------AT-ATACACTCAGGTTGAAATTCT-T-GTT----AAG----TAA-----G---AAT-GT-GT-C-AATTTA-------------GT-----------------A-------------------TG-----------------A--A-ATA-ATAA-CTTCAT-CCTGGCGTTT--CAGT---A---T---GTTACTCGGTTTGTTTACTTTGTT--TTGAATAG----AA---AGTTTACTTGTGTCGCAG-AAATCCCAATATATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-AT-C--AGTG--TAGGGAAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGATAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATGGCGGAATAC-TCTTCATTAGAANTTTTAATATACTCAAAAGCGAGTTGAATA
gi|1 : TGTATAGTT-A-ATG-GACAGTC-AC-AAA------AT-ATACACTCAGGTTGAAATTCTCT-GTT----AAGGAAGTAA-----G---AAT-GT-GT-C-AATTTA-------------GC-----------------A-------------------TGTCCAATACGTAATCGTGA--A-ATA-ATAA-CTTCAT-CCTGTCGTTT--GAGT---A---TTATGTTACTCGGCTTGTTTACCTTGTT--CTGAATAG----AACAAAGTTTACTTGTGTCGCAG-ACACCCCAATACACTTGCCAAAGAGAACCCAC-ATACAGTTTTATAAGGTATTTTAC-AT-C--AGTG--TTGGGATT-------CCT-ACACTGTACAATA--TCGTA--TTGAAGTGC-ATCCTTCGCC-GCCTT-GTCC--GCCC--CGGTGC-TGC--CATGGACACCAATCATGC------C-AATGTG-ACCCGGAAT--CCAGCAGAACT--CAACTA--TTT-CA--C--CTTGTTCACCC-AGAAGACAGTGCTGGTTCAATA--------TA-TCTAAAAT-GCA-TGGA--TGATC--AACGTTCATGTTGCTCACCGACTGTAGACAAGATACTAG--AGCCTGAAAACATGGCAAAATAT-TTTTCATTGGAAAATTTAATATACTCAAAAGCGAGCTGAATA
gi|10 : gtAAAATATTTGCCAA-GAGAATTTAC-ATACAGTTTTATTAGGTATTTTAC-AT-C--AGTA--TAGGGAAT-------TTTTATAGTGTACAATA--TCGTA--TCGAAGTGC-ATCTTTTAC-----------T--GCTT--TGGTGT-TGC--CATGG---------ATACATGTACC-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAATTA--TTT-TA--C--CTTGTTTACTT-AGAAGGTAGTGCTGGTTTAATATACAAATGTA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTCACTGTAGACAAGATA-GGG--AGTCTGAAAATATAG-GGAATACATCTTgctcctgcctcggctgtacaaattgttgcctcgttcggaacacatcatgctctactgtatcactgcaacgaccctattttggtccttcgatccgtctgtataaatatcaatcgtagaatgtttggcccgtttcacctcgaagaatttttgtttgaaaacagcgggatttgtttcagacttcctacattcagaaagtgatgcgtccaccttaggttttactaattt
gi|12 : TAAAGTGCCATCTTT-GCCTACTTTTGTCTTTGCTTGTTGGTGTGTGCAACATG----------ATAC------CCAGTGTGGACTTGGAATTCCCAGCAGAATTACCAGATAGCTTT-TAGGC--TGCGTTTACTTTAGAAGAAAGTGCTGGTTTAATA--------TAGTCGAAAATGGTATTGGAGGTGATCAAAATGTTCATGTTGCTTA-TGACTGTAGAC
gi|13 : tgtcgtatgaaggtgaGTAA-----TATCA----T--TC-TT--G-------TAAAA-----TA--GT-AT--T-TT-AT---CGGTTGA-AGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------G-TTTTTA-CA-T-ACCAA
gi|14 : aaaacgttgtaaaatagttaaaagaaacaaagtgtgtgcataagccgtttgtacattgtagtattaaatatttagtttttgtgAG-AGCCCCAAATAGATTTGCTAAAGAAAATTCAA-GTAGAGTTTTATGAAATATTTCGA-GT-C--AAAG--TATGGGAT-------TAT-AAAATTTACAGTG--TCATA--TTGAAATGC-ATCTTTTGCC-GTTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAg
gi|15 : G-TAAAAA-GT-TCCTACATT------G-TTTTTA-CATG-ATCAAAAAGGT-TTTTT-CGCGTGGGCGAAAAA-TC--GCT
gi|16 : ataaatcgcatacattggataaattggataacctaaaatcacgagaatttnnnnnnnnnnnnnnnnnnnnCTTT-GTCC--GTTT--TAGTGT-TGC--CATGG---------ATAC------C-AATATG-ACTTTGAAT--CCAGCAGAAGT--CAACTA--TTT-TA--C--CTTGTTTACTT-ATAAGACAATGCTAGCTTAAAC--------TA-TCTGAATT-GCA-AGGA--T
gi|17 : gcaaaatgcat-AT-C--TGTA--TAGGAAAT-------TTT-ATAGTTTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTGT-GTCT--GCTT--TGGTGT-TGC------------------------------TATG-ACTTGGAAT--CCAGCAGAACT--AAACTA--
gi|18 : TATTTAAG-AT-C--ATTA--TAGGGAAT-------TTT-ATAGCGTACAATA--TTGTA--TTGAAATGC-ATCTATTGCC-GCTTT-GCCT--TCTT--TGGTGT-TGC--TAT
gi|2 : tttattaggtacatacaGTGTAAT----TATCA-C-AA--TC-TT--G-------TAAAAA-T-GTA--AT-ACAGTATA-AT---A---TGATAGTT-AATCT-T-AG-TAAACA-GT-TCCTGCATT------G-TTTTTA-CATA-GTCAAAATGGT-TATTT-CGCGTTGGCGAAAAA-TC--GCTACATT-C---CATAAGGATGTGATGTATATATAGTT-A-ATG-GACACTC-AC-AAG------AT-ATACATTCCGGTTGAA-----------------G----TAA-----G---GAT-GT-GT-C-AGTTTA-------------GT-----------------A-------------------TG-----------------A--G-ATA-ATAA-CTTCAT-TTTGGCGTTT--CATT---A---T---GTTACACAGTTTGTTTACTTTGCT--TTGAATA------A---AGTTT--------------------CAATATATTTGCCAAAGAGAATTTAT-ATACAGCTTAATAAGGTATTTTAC-AT-C--AGTG--TAGGGCAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCATTTGCC-GCTTT-ATCT--GCGT--TAGTGT-TGC--CATGG---------ATAT------C-AATATG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTT--TT-AGAAGATAGTACTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AGTGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTAAAAATATGGTGAAATAT-TTGTCATTAGAATTTTTAATATACTCAAAAGCAAGTTGAATA
gi|3 : TGTAAAAATATATCA-C-AT--TT-CT--AAATAGAATAAAAA-TTGTA---T--C--TATT-AT---A---TGACAGTCCAATTCCT-AGGTAAAAA-GT-CCGTTCATTAGAAAAG-TTTATAACATTCACCAAGAAGGC-TGTTTTCGTGT-GGCGAAAAAATC--GCTACATT-CCAAAA-AAGTATGTG--GT-TGTATAGTT-A-ACAAGACAGTC-ACGAAG------ATTATACACTCAGGTT-AAATTCTCT-GTT----AAG----TAAATAGAG---AATTGT-GTGC-AATTTA-------------GT-----------------ACTGTCCAATACTGTAATCATG-----------------A--AGATA-ATAAACTTCATGCCTGACGTTTGATATT---A---T---GT-ACTCGGCTTGTTTACTTTGTTCGTTGAATAGGAGTAA---AGTTTACTTGTGTCGCAGAAAATTCCAATATA-TTGCTAGAGAGAATTTACAATACAGTT--AGAAGGTATTTTACAAT-CA-AGTGAATAGGGAAT-------TTT-ATG--GTACAATATTTCGTA--TTGA
gi|4 : ttaaaaacggtgtaaaaggttgaaaggaacaagagttatggccgataaacagttaatatacattgtttatttatgtagatatttttcagatttttgt--TATG--T---A---TGACAGAC-AATTT-T-AG-TAAAAA-GC-TTTTTCATT------G--TTTTA-CAAT-ATGAAAAAGGC-TTTTT-CATGTAGGCGTAAAA-TC--GCTTTATT-CG--AA-AAGGATGTGTTGTA-GTATAGTT-A-ACG-GAGAGTT-AC-AAG------AT-ACACATTCAGCTTGAAAATC--T-GTT----AAG----CAA-----G---AAT-GT-GT-C-AGTTTA-------------AC-----------------ATGGCCAATACGTTGTCG--TG-----------------A--A-ATA-AAAA-CTTAAT-CCTGGCGTTT--CAGT---ACGTC---GTTATTCGGTTTGTTTACTTAGCT--TTGAATAGAGT-AA---AGTTTACTTGTGTCGCAA-AAATACCAACATACTTGCCAAAGAGAATTTAT-ATATAATTTCATAAAGTATTTGAC-ATAC--A--A--AAAGGCATCTATACATCT-ATAGTGTACAATG--TCG-----TGA--------CTTTTGCC-GCTT-----------------TGT-TGC--CATGG---------ATA-------C-AAT
gi|5 : atataaattattagaagaaaatgtttgtgacagcaatattgatgaattttgtaataaaaagcaagagattagacaaaataagctacaagatatgATAAATTTGC-GAAGC-AATTCG--ATACAG---AACA--TTATTTT-C-AT-TTTAATG--AAAGACATAGCTGT-TTT-ATA-CATA-AACA--TAGTACATTGTAGT------TTTCGCT-GAATT-GCCT--GCTG--TGGCGT-TGT--CAAGG---------ATAC------C-AATATT-ACTTGCAAT--CTAGCAGAAT------CTA--TCTATA--CATCTTGTTTGGTT-CGTA-ATAGTGCTATTGTAAAA--------TT-TCTATATT-GTA-TGTA--TGATT--GATA-TCATATTGCTCATTGACTTTAGACAAAA-A-GGGGAAGTCTGTGAATATAGTAGAATGC-TC----TTAGCAGTTTT---------AAAGGCAAATTGAATaccgagatggctt
gi|6 : atGTGTCAA----TATCAAC-AT--TC-TTTGG-------TAAAAA-A-ATT--AT--T--TATT-TTT--A---TGACAGTT-AATTT---AG-TAAAAA-GT-TCTTTCATT------GTTTTTTA-CATT-ACCAAAAAGGC-TTTTT-CGTGT-----------TCGGGCTA-AT-----------GGATGTG-T---TGTATAGTT-ATATG-GACAGGCAAC-AAGGTATATAT-GTACATTCAGGTTGAAATTCTCT-GTT----AAGCAAATAA-----G---AAT-GT-GT-C-AATTTA-------------GTGTGGCAAATACGAAATCG-------------------TG-----------------A--A-ATA-ATAA-CTTCAT-CCTGGCGCTT--CAGTATAA---T---GTTGCTCGGTTTGTTTACTTTGTT--TTGAATAG----Ataataacatttgcgtcggtggtgaaaagtgttatctcagtctgaaatcgttaaaagaaaacattgtttgtgactaccagtactgctgcagcaacaactttattttgaactttcgacgcgcatctagcaatataatttctaaaatgct
gi|7 : cataacacaagttgttgtaacatgtattataaaataccgggtatttcagattttt----TATCA-C-AT--TC-TT--G-------TAAAAAGT-GTATGATTAC---ATGTAT---A---TGATTGTC-AATAT-T-TG-TTAAAA-TT-ACATGCATT------G-CTTGCA-CATT-ATGAAAAGGAC-CATTT-CGATTGGGTGAAAGA-------TACAT----------------------------AGTA-C-ATC-GACAG-C-AC-AAG------AT-ATACAATTGGGCAGACGTTCT-TTGTT----AAG----CAAATAC-G---AAT-AT-GT-CTAGTTT--------------GA-----------------A-------------------TG-----------------ACCG-ATCTATCA-CTTCGT-CTTGGCATTT--CA-T---A---T---G-------GTTTGTGTACTTTGTT--CAGAATAG----AATGAAGTTTACTTGTGTCACAG-AAAGCCTAATGTATTTgtaa
gi|8 : tgtattttgaacagcttggcgtgttaagatttttctggatacatataTGTAATA---TATC--T-ATGATN-TT--G-------TAAAAA-TTGTA--AT-A-----TA-AT---A---TGATAATC-ATTTT-T-AG-TAAAAAAGT-TACTGCATT------G-TTTTTA-CATT-GTCAAAAAGGT-TATTT-CGCGTAGGCAAAAAA-TC--ACAACATTCC---AA-AAGGATGTG----ATGTATAGTT-A-ATG-GACACTC-AC-AAG------AT-ATACATTCCGGCTGAAATTCTCT-GTTAAACAAG----TAA-----G---AAT-GT-GT-C-AATTTATTATGACCAATACGT-----------------AATCG---------------TG-----------------A--A-ATA-ATAA-CTTCAT-CCTGGCGTTT--CA--------------TTACACGGTTTGTTTACTTTGTT--TTGAATA
gi|9 : ccacattcttgtaaaaatGTAAA----TATCA-CCAT--TCATT--G-------TAAAAA-T-------T-G---TATG-ATTCAA---TGACAGTC-AATTC-TGAG-TAAAAA-GAATCCTTAATT------G-TTTTAA-CATC-A-CAAAAAGGCCTGTTT-CGTGTAGGCGAAAAA-TC--GCTACATT-C---AA-AAGGATGTG-TGTA-----AGTTAA-AGG-GACAGAC-AC-AAGA-----AT-ATACACTCAGGTTGAAATTCTCT-GTT----AAG----TAA-----GTAAGAT-GTGGT-C-AATTTA-------------GT-----------------A-------------------T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTATAAATTGTTGCCTCATTAGGAAGGCATATAGAGAAAACGTCGTTTTTGATTACTTCATTAGCAATGCCTGTATCTTATTTAAACAATTTGTGTAAATCCCAATAATGGAATGTGTTGTTTTAATTGGATTTTTTTTTTTGCTTAAATACAAATGAATTGGTTTTAGATTTCTTACATTCAAAAAATGATGTGTCTACTTTGGGTTTTATCCATCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 111 1111111111 44444444444444444444444444444 111111 1 222222222 333333 111111 1111 2222 1111111111 55555555555555555555555555555555555555555555555555555555555555555555555 2222222222222 333333 11 11 2222222 111111111 1111111 22222222 11 1 11 1 1
lowQualScore : 222222 000 77 5 8888888888 77777777777777777777777777777 2 5 777 4 4 4 1 222222 4 4 4 1 5 1 5 1 0 5 66 888888888 666666 5 5 88 3 5 5 999999 5 1 0 0000 1111 4444444444 888 5 5 5 5 00000000000000000000000000000000000000000000000000000000000000000000000 8888 5 5 5 77 6666666666666 5 1 77 888888 0 666666 0 1 11 0 44 4 4 00 1 66 0 7777777 4 5 66 66 4 4 4 55 55 4 55 777777777 5555555 5 5 77 77 77 6 99 99 1 6 0 44444444 6 6 6 99 11 0 3 3 0 33 0 0 9 1 7 0
lowQualScore : ...... ... .. . .......... ............................. . . ... . . . . ...... . . . . . . . . . . .. ......... ...... . . .. . . . ...... . . . .... .... .......... ... . . . . ....................................................................... .... . . . .. ............. . . .. ...... . ...... . . .. . .. . . .. . .. . ....... . . .. .. . . . .. .. . .. ......... ....... . . .. .. .. . .. .. . . . ........ . . . .. .. . . . . .. . . . . . .
lowQualScore : 666666 999 99 7 7777777777 00000000000000000000000000000 2 0 111 4 4 4 9 888888 4 4 4 4 0 0 0 1 2 0 99 444444444 555555 0 0 11 4 0 0 444444 0 1 1 6666 2222 1111111111 888 0 0 0 0 77777777777777777777777777777777777777777777777777777777777777777777777 9999 7 7 7 99 9999999999999 0 9 99 666666 8 888888 9 7 00 1 44 4 4 66 9 11 7 2222222 4 7 11 11 4 4 0 55 55 0 55 888888888 8888888 0 7 99 99 99 7 22 22 7 7 3 22222222 7 7 7 22 00 8 8 2 0 88 5 0 2 0 3 7
consensus : GTGTAA-A----TATCA-C-AT--TC-TT--G-------TAAAAA-T-GTA--AT-AC--TATN-AT---A---TGACAGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CATT-ATCAAAAAGGC-TNTTT-CGCGTAGGCGAAAA-ATC--GCTACATT-C---AA-AAGGATGTG-TGTATGTATAGTT-A-AC-GGACAGTC-AC-AAG------A-TATACACTCAGGTTGAAATTCTCTGTT----AAG----TA-----A----G---AA-TGT-GT-C-AATTTA-------------GT-------------------A-----------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGTTT--CAGT---A---T---GTTACTCGGTTTGTTTACTTTGTT--TTGAATAGA---A--AAGTTTACTTGTGTCGCAG-AAACCCCAATATATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-AT-C--AGTG--TAGGGAAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGATAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATGGCGGAATAC-TCTTCATTAGAANTTTTAATATACTCAAAAGCGAGTTGAATA
Reference ( family-374 ) : GTGTAA-A----TATCA-C-AT--TC-TT--G-------TAAAAA-T-GTA--AT-AC--TATN-AT---A---TGACAGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CATT-ATCAAAAAGGC-TNTTT-CGCGTAGGCGAAAA-ATC--GCTACATT-C---AA-AAGGATGTG-TGTATGTATAGTT-A-AC-GGACAGTC-AC-AAG------A-TATACACTCAGGTTGAAATTCTCTGTT----AAG----TA-----A----G---AA-TGT-GT-C-AATTTA-------------GT-------------------A-----------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGTTT--CAGT---A---T---GTTACTCGGTTTGTTTACTTTGTT--TTGAATAGA---A--AAGTTTACTTGTGTCGCAG-AAACCCCAATATATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-AT-C--AGTG--TAGGGAAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGATAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATGGCGGAATAC-TCTTCATTAGAANTTTTAATATACTCAAAAGCGAGTTGAATA
gi|1 : TGTATAGTT-A-AT-GGACAGTC-AC-AAA------A-TATACACTCAGGTTGAAATTCTCTGTT----AAGGAAGTA-----A----G---AA-TGT-GT-C-AATTTA-------------GC-------------------A-----------------TGTCCAATACGTAATCGTGA--A-ATA-AT-AACTTCAT-CCTGTCGTTT--GAGT---A---TTATGTTACTCGGCTTGTTTACCTTGTT--CTGAATAGA---ACAAAGTTTACTTGTGTCGCAG-ACACCCCAATACACTTGCCAAAGAGAACCCAC-ATACAGTTTTATAAGGTATTTTAC-AT-C--AGTG--TTGGGATT-------CCT-ACACTGTACAATA--TCGTA--TTGAAGTGC-ATCCTTCGCC-GCCTT-GTCC--GCCC--CGGTGC-TGC--CATGGACACCAATCATGC------C-AATGTG-ACCCGGAAT--CCAGCAGAACT--CAACTA--TTT-CA--C--CTTGTTCACCC-AGAAGACAGTGCTGGTTCAATA--------TA-TCTAAAAT-GCA-TGGA--TGATC--AACGTTCATGTTGCTCACCGACTGTAGACAAGATACTAG--AGCCTGAAAACATGGCAAAATAT-TTTTCATTGGAAAATTTAATATACTCAAAAGCGAGCTGAATA
gi|10 : gtAAAATATTTGCCAA-GAGAATTTAC-ATACAGTTTTATTAGGTATTTTAC-AT-C--AGTA--TAGGGAAT-------TTTTATAGTGTACAATA--TCGTA--TCGAAGTGC-ATCTTTTAC-----------T--GCTT--TGGTGT-TGC--CATGG---------ATACATGTACC-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAATTA--TTT-TA--C--CTTGTTTACTT-AGAAGGTAGTGCTGGTTTAATATACAAATGTA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTCACTGTAGACAAGATA-GGG--AGTCTGAAAATATAG-GGAATACATCTTgctcctgcctcggctgtacaaattgttgcctcgttcggaacacatcatgctctactgtatcactgcaacgaccctattttggtccttcgatccgtctgtataaatatcaatcgtagaatgtttggcccgtttcacctcgaagaatttttgtttgaaaacagcgggatttgtttcagacttcctacattcagaaagtgatgcgtccaccttaggttttactaattt
gi|12 : TAAAGTGCCATCTTT-GCCTACTTTTGTCTTTGCTTGTTGGTGTGTGCAACATG----------ATAC------CCAGTGTGGACTTGGAATTCCCAGCAGAATTACCAGATAGCTTT-TAGGC--TGCGTTTACTTTAGAAGAAAGTGCTGGTTTAATA--------TAGTCGAAAATGGTATTGGAGGTGATCAAAATGTTCATGTTGCTTA-TGACTGTAGAC
gi|13 : tgtcgtatgaaggtgaA-A----TATCA----T--TC-TT--G-------TAAAA-----TA--GT-AT--T-TT-AT---CGGTTGA-AGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CA-T-ACCAA
gi|14 : aaaacgttgtaaaatagttaaaagaaacaaagtgtgtgcataagccgtttgtacattgtagtattaaatatttagtttttgtggtAG-AGCCCCAAATAGATTTGCTAAAGAAAATTCAA-GTAGAGTTTTATGAAATATTTCGA-GT-C--AAAG--TATGGGAT-------TAT-AAAATTTACAGTG--TCATA--TTGAAATGC-ATCTTTTGCC-GTTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAg
gi|15 : G-TAAAAA-GT-TCCTACATT------GTTTTT-A-CATG-ATCAAAAAGGT-TTTTT-CGCGTGGGCGAAAA-ATC--GCT
gi|16 : ataaatcgcatacattggataaattggataacctaaaatcacgagaatttnnnnnnnnnnnnnnnnnnnnCTTT-GTCC--GTTT--TAGTGT-TGC--CATGG---------ATAC------C-AATATG-ACTTTGAAT--CCAGCAGAAGT--CAACTA--TTT-TA--C--CTTGTTTACTT-ATAAGACAATGCTAGCTTAAAC--------TA-TCTGAATT-GCA-AGGA--T
gi|17 : gcaaaatgcat-AT-C--TGTA--TAGGAAAT-------TTT-ATAGTTTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTGT-GTCT--GCTT--TGGTGT-TGC------------------------------TATG-ACTTGGAAT--CCAGCAGAACT--AAACTA--
gi|18 : TATTTAAG-AT-C--ATTA--TAGGGAAT-------TTT-ATAGCGTACAATA--TTGTA--TTGAAATGC-ATCTATTGCC-GCTTT-GCCT--TCTT--TGGTGT-TGC--TAT
gi|2 : tttattaggtacatacaGTGTAA-T----TATCA-C-AA--TC-TT--G-------TAAAAA-T-GTA--AT-ACAGTATA-AT---A---TGATAGTT-AATCT-T-AG-TAAACA-GT-TCCTGCATT------GTTTTT-A-CATA-GTCAAAATGGT-TATTT-CGCGTTGGCGAAAA-ATC--GCTACATT-C---CATAAGGATGTGATGTATATATAGTT-A-AT-GGACACTC-AC-AAG------A-TATACATTCCGGTTGAA----------------G----TA-----A----G---GA-TGT-GT-C-AGTTTA-------------GT-------------------A-----------------TG-----------------A--G-ATA-AT-AACTTCAT-TTTGGCGTTT--CATT---A---T---GTTACACAGTTTGTTTACTTTGCT--TTGAATA--------AAGTTT--------------------CAATATATTTGCCAAAGAGAATTTAT-ATACAGCTTAATAAGGTATTTTAC-AT-C--AGTG--TAGGGCAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCATTTGCC-GCTTT-ATCT--GCGT--TAGTGT-TGC--CATGG---------ATAT------C-AATATG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTT--TT-AGAAGATAGTACTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AGTGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTAAAAATATGGTGAAATAT-TTGTCATTAGAATTTTTAATATACTCAAAAGCAAGTTGAATA
gi|3 : TGTAA-AAATATATCA-C-AT--TT-CT--AAATAGAATAAAAA-TTGTA---T--C--TATT-AT---A---TGACAGTCCAATTCCT-AGGTAAAAA-GT-CCGTTCATTAGAAAAGTTTAT-AACATTCACCAAGAAGGC-TGTTTTCGTGT-GGCGAAAAAATC--GCTACATT-CCAAAA-AAGTATGTG--GT-TGTATAGTT-A-ACAAGACAGTC-ACGAAG------ATTATACACTCAGGTT-AAATTCTCTGTT----AAG----TAAATAGA----G---AATTGT-GTGC-AATTTA-------------GTACTGTCCAATACTGTAATCA-----------------TG-----------------A--AGATA-ATAAACTTCATGCCTGACGTTTGATATT---A---T---G-TACTCGGCTTGTTTACTTTGTTCGTTGAATAGGAGTA--AAGTTTACTTGTGTCGCAGAAAATTCCAATATA-TTGCTAGAGAGAATTTACAATACAGTT--AGAAGGTATTTTACAAT-CA-AGTGAATAGGGAAT-------TTT-ATG--GTACAATATTTCGTA--TTGA
gi|4 : ttaaaaacggtgtaaaaggttgaaaggaacaagagttatggccgataaacagttaatatacattgtttatttatgtagatatttttcagatttttgt--TATG--T---A---TGACAGAC-AATTT-T-AG-TAAAAA-GC-TTTTTCATT------G-TTTT-A-CAAT-ATGAAAAAGGC-TTTTT-CATGTAGGCGTAAA-ATC--GCTTTATT-CG--AA-AAGGATGTGTTGTA-GTATAGTT-A-AC-GGAGAGTT-AC-AAG------A-TACACATTCAGCTTGAAA--ATCTGTT----AAG----CA-----A----G---AA-TGT-GT-C-AGTTTA-------------AC-------------------ATGGCCAATACGTTGTCGTG-----------------A--A-ATA-AA-AACTTAAT-CCTGGCGTTT--CAGT---ACGTC---GTTATTCGGTTTGTTTACTTAGCT--TTGAATAGAGT-A--AAGTTTACTTGTGTCGCAA-AAATACCAACATACTTGCCAAAGAGAATTTAT-ATATAATTTCATAAAGTATTTGAC-ATAC--A--A--AAAGGCATCTATACATCT-ATAGTGTACAATG--TCG-----TGA--------CTTTTGCC-GCTT-----------------TGT-TGC--CATGG---------ATA-------C-AAT
gi|5 : atataaattattagaagaaaatgtttgtgacagcaatattgatgaattttgtaataaaaagcaagagattagacaaaataagctacaagatatgATAAATTTGC-GAAGC-AATTCG--ATACAG---AACA--TTATTTT-C-AT-TTTAATG--AAAGACATAGCTGT-TTT-ATA-CATA-AACA--TAGTACATTGTAGT------TTTCGCT-GAATT-GCCT--GCTG--TGGCGT-TGT--CAAGG---------ATAC------C-AATATT-ACTTGCAAT--CTAGCAGAAT------CTA--TCTATA--CATCTTGTTTGGTT-CGTA-ATAGTGCTATTGTAAAA--------TT-TCTATATT-GTA-TGTA--TGATT--GATA-TCATATTGCTCATTGACTTTAGACAAAA-A-GGGGAAGTCTGTGAATATAGTAGAATGC-TC----TTAGCAGTTTT---------AAAGGCAAATTGAATaccgagatggctt
gi|6 : atGTGTCA-A----TATCAAC-AT--TC-TTTGG-------TAAAAA-A-ATT--AT--T--TATT-TTT--A---TGACAGTT-AATTT---AG-TAAAAA-GT-TCTTTCATT------GTTTTTTA-CATT-ACCAAAAAGGC-TTTTT-CGTGT-----------TCGGGCTA-AT-----------GGATGTG-T---TGTATAGTT-ATAT-GGACAGGCAAC-AAGGTATATA-TGTACATTCAGGTTGAAATTCTCTGTT----AAGCAAATA-----A----G---AA-TGT-GT-C-AATTTA-------------GTGTGGCAAATACGAAATC--G-----------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGCTT--CAGTATAA---T---GTTGCTCGGTTTGTTTACTTTGTT--TTGAATAGA---taataacatttgcgtcggtggtgaaaagtgttatctcagtctgaaatcgttaaaagaaaacattgtttgtgactaccagtactgctgcagcaacaactttattttgaactttcgacgcgcatctagcaatataatttctaaaatgct
gi|7 : cataacacaagttgttgtaacatgtattataaaataccgggtatttcagatttttTAT-A----TATCA-C-AT--TC-TT--G-------TAAAAAGT-GTATGATTAC---ATGTAT---A---TGATTGTC-AATAT-T-TG-TTAAAA-TT-ACATGCATT------GCTTGC-A-CATT-ATGAAAAGGAC-CATTT-CGATTGGGTGAAAG-A------TACAT----------------------------AGTA-C-AT-CGACAG-C-AC-AAG------A-TATACAATTGGGCAGACGTTCTTTGTT----AAG----CA-----AATACG---AA-TAT-GT-CTAGTTT--------------GA-------------------A-----------------TG-----------------ACCG-ATCTAT-CACTTCGT-CTTGGCATTT--CA-T---A---T---G-------GTTTGTGTACTTTGTT--CAGAATAGA---ATGAAGTTTACTTGTGTCACAG-AAAGCCTAATGTATTTgtaa
gi|8 : tgtattttgaacagcttggcgtgttaagatttttctggatacaTGTAATA----TATC--T-ATGATN-TT--G-------TAAAAA-TTGTA--AT-A-----TA-AT---A---TGATAATC-ATTTT-T-AG-TAAAAAAGT-TACTGCATT------GTTTTT-A-CATT-GTCAAAAAGGT-TATTT-CGCGTAGGCAAAAA-ATC--ACAACATTCC---AA-AAGGATGTG----ATGTATAGTT-A-AT-GGACACTC-AC-AAG------A-TATACATTCCGGCTGAAATTCTCTGTTAAACAAG----TA-----A----G---AA-TGT-GT-C-AATTTATTATGACCAATACGT-------------------AATCG-------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGTTT--CA--------------TTACACGGTTTGTTTACTTTGTT--TTGAATA
gi|9 : ccacattcttgtaaaaatGTAA-A----TATCA-CCAT--TCATT--G-------TAAAAA-T-------T-G---TATG-ATTCAA---TGACAGTC-AATTC-TGAG-TAAAAA-GAATCCTTAATT------GTTTTA-A-CATC-A-CAAAAAGGCCTGTTT-CGTGTAGGCGAAAA-ATC--GCTACATT-C---AA-AAGGATGTG-TGTA-----AGTTAA-AG-GGACAGAC-AC-AAGA-----A-TATACACTCAGGTTGAAATTCTCTGTT----AAG----TA-----A----GTAAGA-TGTGGT-C-AATTTA-------------GT-------------------A-----------------T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTATAAATTGTTGCCTCATTAGGAAGGCATATAGAGAAAACGTCGTTTTTGATTACTTCATTAGCAATGCCTGTATCTTATTTAAACAATTTGTGTAAATCCCAATAATGGAATGTGTTGTTTTAATTGGATTTTTTTTTTTGCTTAAATACAAATGAATTGGTTTTAGATTTCTTACATTCAAAAAATGATGTGTCTACTTTGGGTTTTATCCATCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 111 1111111111 44444444444444444444444444444 111111 1 222222222 333333 111111 1111 2222 1111111111 55555555555555555555555555555555555555555555555555555555555555555555555 2222222222222 333333 11 11 2222222 111111111 1111111 22222222 11 1 11 1 1
lowQualScore : 222222 000 77 5 8888888888 77777777777777777777777777777 2 5 777 4 4 4 1 222222 4 4 4 1 5 1 5 1 0 5 66 888888888 666666 5 5 88 3 5 5 999999 5 1 0 0000 1111 4444444444 888 5 5 5 5 00000000000000000000000000000000000000000000000000000000000000000000000 8888 5 5 5 77 6666666666666 5 1 77 888888 0 666666 0 1 11 0 44 4 4 00 1 66 0 7777777 4 5 66 66 4 4 4 55 55 4 55 777777777 5555555 5 5 77 77 77 6 99 99 1 6 0 44444444 6 6 6 99 11 0 3 3 0 33 0 0 9 1 7 0
lowQualScore : ...... ... .. . .......... ............................. . . ... . . . . ...... . . . . . . . . . . .. ......... ...... . . .. . . . ...... . . . .... .... .......... ... . . . . ....................................................................... .... . . . .. ............. . . .. ...... . ...... . . .. . .. . . .. . .. . ....... . . .. .. . . . .. .. . .. ......... ....... . . .. .. .. . .. .. . . . ........ . . . .. .. . . . . .. . . . . . .
lowQualScore : 666666 999 99 7 7777777777 00000000000000000000000000000 2 0 111 4 4 4 9 888888 4 4 4 4 0 0 0 1 2 0 99 444444444 555555 0 0 11 4 0 0 444444 0 1 1 6666 2222 1111111111 888 0 0 0 0 77777777777777777777777777777777777777777777777777777777777777777777777 9999 7 7 7 99 9999999999999 0 9 99 666666 8 888888 9 7 00 1 44 4 4 66 9 11 7 2222222 4 7 11 11 4 4 0 55 55 0 55 888888888 8888888 0 7 99 99 99 7 22 22 7 7 3 22222222 7 7 7 22 00 8 8 2 0 88 5 0 2 0 3 7
consensus : GTGTAA-A----TATCA-C-AT--TC-TT--G-------TAAAAA-T-GTA--AT-AC--TATN-AT---A---TGACAGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CATT-ATCAAAAAGGC-TNTTT-CGCGTAGGCGAAAA-ATC--GCTACATT-C---AA-AAGGATGTG-TGTATGTATAGTT-A-AC-GGACAGTC-AC-AAG------A-TATACACTCAGGTTGAAATTCTCTGTT----AAG----TA-----A----G---AA-TGT-GT-C-AATTTA-------------GT-------------------A-----------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGTTT--CAGT---A---T---GTTACTCGGTTTGTTTACTTTGTT--TTGAATAGA---A--AAGTTTACTTGTGTCGCAG-AAACCCCAATATATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-AT-C--AGTG--TAGGGAAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGATAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATGGCGGAATAC-TCTTCATTAGAANTTTTAATATACTCAAAAGCGAGTTGAATA
Reference ( family-374 ) : GTGTAA-A----TATCA-C-AT--TC-TT--G-------TAAAAA-T-GTA--AT-AC--TATN-AT---A---TGACAGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CATT-ATCAAAAAGGC-TNTTT-CGCGTAGGCGAAAA-ATC--GCTACATT-C---AA-AAGGATGTG-TGTATGTATAGTT-A-AC-GGACAGTC-AC-AAG------A-TATACACTCAGGTTGAAATTCTCTGTT----AAG----TA-----A----G---AA-TGT-GT-C-AATTTA-------------GT-------------------A-----------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGTTT--CAGT---A---T---GTTACTCGGTTTGTTTACTTTGTT--TTGAATAGA---A--AAGTTTACTTGTGTCGCAG-AAACCCCAATATATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-AT-C--AGTG--TAGGGAAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGATAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATGGCGGAATAC-TCTTCATTAGAANTTTTAATATACTCAAAAGCGAGTTGAATA
gi|1 : TGTATAGTT-A-AT-GGACAGTC-AC-AAA------A-TATACACTCAGGTTGAAATTCTCTGTT----AAGGAAGTA-----A----G---AA-TGT-GT-C-AATTTA-------------GC-------------------A-----------------TGTCCAATACGTAATCGTGA--A-ATA-AT-AACTTCAT-CCTGTCGTTT--GAGT---A---TTATGTTACTCGGCTTGTTTACCTTGTT--CTGAATAGA---ACAAAGTTTACTTGTGTCGCAG-ACACCCCAATACACTTGCCAAAGAGAACCCAC-ATACAGTTTTATAAGGTATTTTAC-AT-C--AGTG--TTGGGATT-------CCT-ACACTGTACAATA--TCGTA--TTGAAGTGC-ATCCTTCGCC-GCCTT-GTCC--GCCC--CGGTGC-TGC--CATGGACACCAATCATGC------C-AATGTG-ACCCGGAAT--CCAGCAGAACT--CAACTA--TTT-CA--C--CTTGTTCACCC-AGAAGACAGTGCTGGTTCAATA--------TA-TCTAAAAT-GCA-TGGA--TGATC--AACGTTCATGTTGCTCACCGACTGTAGACAAGATACTAG--AGCCTGAAAACATGGCAAAATAT-TTTTCATTGGAAAATTTAATATACTCAAAAGCGAGCTGAATA
gi|10 : gtAAAATATTTGCCAA-GAGAATTTAC-ATACAGTTTTATTAGGTATTTTAC-AT-C--AGTA--TAGGGAAT-------TTTTATAGTGTACAATA--TCGTA--TCGAAGTGC-ATCTTTTAC-----------T--GCTT--TGGTGT-TGC--CATGG---------ATACATGTACC-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAATTA--TTT-TA--C--CTTGTTTACTT-AGAAGGTAGTGCTGGTTTAATATACAAATGTA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTCACTGTAGACAAGATA-GGG--AGTCTGAAAATATAG-GGAATACATCTTgctcctgcctcggctgtacaaattgttgcctcgttcggaacacatcatgctctactgtatcactgcaacgaccctattttggtccttcgatccgtctgtataaatatcaatcgtagaatgtttggcccgtttcacctcgaagaatttttgtttgaaaacagcgggatttgtttcagacttcctacattcagaaagtgatgcgtccaccttaggttttactaattt
gi|12 : TAAAGTGCCATCTTT-GCCTACTTTTGTCTTTGCTTGTTGGTGTGTGCAACATG----------ATAC------CCAGTGTGGACTTGGAATTCCCAGCAGAATTACCAGATAGCTTT-TAGGC--TGCGTTTACTTTAGAAGAAAGTGCTGGTTTAATA--------TAGTCGAAAATGGTATTGGAGGTGATCAAAATGTTCATGTTGCTTA-TGACTGTAGAC
gi|13 : tgtcgtatgaaggtgaA-A----TATCA----T--TC-TT--G-------TAAAA-----TA--GT-AT--T-TT-AT---CGGTTGA-AGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CA-T-ACCAA
gi|14 : aaaacgttgtaaaatagttaaaagaaacaaagtgtgtgcataagccgtttgtacattgtagtattaaatatttagtttttgtggtAG-AGCCCCAAATAGATTTGCTAAAGAAAATTCAA-GTAGAGTTTTATGAAATATTTCGA-GT-C--AAAG--TATGGGAT-------TAT-AAAATTTACAGTG--TCATA--TTGAAATGC-ATCTTTTGCC-GTTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAg
gi|15 : G-TAAAAA-GT-TCCTACATT------GTTTTT-A-CATG-ATCAAAAAGGT-TTTTT-CGCGTGGGCGAAAA-ATC--GCT
gi|16 : ataaatcgcatacattggataaattggataacctaaaatcacgagaatttnnnnnnnnnnnnnnnnnnnnCTTT-GTCC--GTTT--TAGTGT-TGC--CATGG---------ATAC------C-AATATG-ACTTTGAAT--CCAGCAGAAGT--CAACTA--TTT-TA--C--CTTGTTTACTT-ATAAGACAATGCTAGCTTAAAC--------TA-TCTGAATT-GCA-AGGA--T
gi|17 : gcaaaatgcat-AT-C--TGTA--TAGGAAAT-------TTT-ATAGTTTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTGT-GTCT--GCTT--TGGTGT-TGC------------------------------TATG-ACTTGGAAT--CCAGCAGAACT--AAACTA--
gi|18 : TATTTAAG-AT-C--ATTA--TAGGGAAT-------TTT-ATAGCGTACAATA--TTGTA--TTGAAATGC-ATCTATTGCC-GCTTT-GCCT--TCTT--TGGTGT-TGC--TAT
gi|2 : tttattaggtacatacaGTGTAA-T----TATCA-C-AA--TC-TT--G-------TAAAAA-T-GTA--AT-ACAGTATA-AT---A---TGATAGTT-AATCT-T-AG-TAAACA-GT-TCCTGCATT------GTTTTT-A-CATA-GTCAAAATGGT-TATTT-CGCGTTGGCGAAAA-ATC--GCTACATT-C---CATAAGGATGTGATGTATATATAGTT-A-AT-GGACACTC-AC-AAG------A-TATACATTCCGGTTGAA----------------G----TA-----A----G---GA-TGT-GT-C-AGTTTA-------------GT-------------------A-----------------TG-----------------A--G-ATA-AT-AACTTCAT-TTTGGCGTTT--CATT---A---T---GTTACACAGTTTGTTTACTTTGCT--TTGAATA--------AAGTTT--------------------CAATATATTTGCCAAAGAGAATTTAT-ATACAGCTTAATAAGGTATTTTAC-AT-C--AGTG--TAGGGCAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCATTTGCC-GCTTT-ATCT--GCGT--TAGTGT-TGC--CATGG---------ATAT------C-AATATG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTT--TT-AGAAGATAGTACTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AGTGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTAAAAATATGGTGAAATAT-TTGTCATTAGAATTTTTAATATACTCAAAAGCAAGTTGAATA
gi|3 : TGTAA-AAATATATCA-C-AT--TT-CT--AAATAGAATAAAAA-TTGTA---T--C--TATT-AT---A---TGACAGTCCAATTCCT-AGGTAAAAA-GT-CCGTTCATTAGAAAAGTTTAT-AACATTCACCAAGAAGGC-TGTTTTCGTGT-GGCGAAAAAATC--GCTACATT-CCAAAA-AAGTATGTG--GT-TGTATAGTT-A-ACAAGACAGTC-ACGAAG------ATTATACACTCAGGTT-AAATTCTCTGTT----AAG----TAAATAGA----G---AATTGT-GTGC-AATTTA-------------GTACTGTCCAATACTGTAATCA-----------------TG-----------------A--AGATA-ATAAACTTCATGCCTGACGTTTGATATT---A---T---G-TACTCGGCTTGTTTACTTTGTTCGTTGAATAGGAGTA--AAGTTTACTTGTGTCGCAGAAAATTCCAATATA-TTGCTAGAGAGAATTTACAATACAGTT--AGAAGGTATTTTACAAT-CA-AGTGAATAGGGAAT-------TTT-ATG--GTACAATATTTCGTA--TTGA
gi|4 : ttaaaaacggtgtaaaaggttgaaaggaacaagagttatggccgataaacagttaatatacattgtttatttatgtagatatttttcagatttttgt--TATG--T---A---TGACAGAC-AATTT-T-AG-TAAAAA-GC-TTTTTCATT------G-TTTT-A-CAAT-ATGAAAAAGGC-TTTTT-CATGTAGGCGTAAA-ATC--GCTTTATT-CG--AA-AAGGATGTGTTGTA-GTATAGTT-A-AC-GGAGAGTT-AC-AAG------A-TACACATTCAGCTTGAAA--ATCTGTT----AAG----CA-----A----G---AA-TGT-GT-C-AGTTTA-------------AC-------------------ATGGCCAATACGTTGTCGTG-----------------A--A-ATA-AA-AACTTAAT-CCTGGCGTTT--CAGT---ACGTC---GTTATTCGGTTTGTTTACTTAGCT--TTGAATAGAGT-A--AAGTTTACTTGTGTCGCAA-AAATACCAACATACTTGCCAAAGAGAATTTAT-ATATAATTTCATAAAGTATTTGAC-ATAC--A--A--AAAGGCATCTATACATCT-ATAGTGTACAATG--TCG-----TGA--------CTTTTGCC-GCTT-----------------TGT-TGC--CATGG---------ATA-------C-AAT
gi|5 : atataaattattagaagaaaatgtttgtgacagcaatattgatgaattttgtaataaaaagcaagagattagacaaaataagctacaagatatgATAAATTTGC-GAAGC-AATTCG--ATACAG---AACA--TTATTTT-C-AT-TTTAATG--AAAGACATAGCTGT-TTT-ATA-CATA-AACA--TAGTACATTGTAGT------TTTCGCT-GAATT-GCCT--GCTG--TGGCGT-TGT--CAAGG---------ATAC------C-AATATT-ACTTGCAAT--CTAGCAGAAT------CTA--TCTATA--CATCTTGTTTGGTT-CGTA-ATAGTGCTATTGTAAAA--------TT-TCTATATT-GTA-TGTA--TGATT--GATA-TCATATTGCTCATTGACTTTAGACAAAA-A-GGGGAAGTCTGTGAATATAGTAGAATGC-TC----TTAGCAGTTTT---------AAAGGCAAATTGAATaccgagatggctt
gi|6 : atGTGTCA-A----TATCAAC-AT--TC-TTTGG-------TAAAAA-A-ATT--AT--T--TATT-TTT--A---TGACAGTT-AATTT---AG-TAAAAA-GT-TCTTTCATT------GTTTTTTA-CATT-ACCAAAAAGGC-TTTTT-CGTGT-----------TCGGGCTA-AT-----------GGATGTG-T---TGTATAGTT-ATAT-GGACAGGCAAC-AAGGTATATA-TGTACATTCAGGTTGAAATTCTCTGTT----AAGCAAATA-----A----G---AA-TGT-GT-C-AATTTA-------------GTGTGGCAAATACGAAATC--G-----------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGCTT--CAGTATAA---T---GTTGCTCGGTTTGTTTACTTTGTT--TTGAATAGA---taataacatttgcgtcggtggtgaaaagtgttatctcagtctgaaatcgttaaaagaaaacattgtttgtgactaccagtactgctgcagcaacaactttattttgaactttcgacgcgcatctagcaatataatttctaaaatgct
gi|7 : cataacacaagttgttgtaacatgtattataaaataccgggtatttcagatttttTAT-A----TATCA-C-AT--TC-TT--G-------TAAAAAGT-GTATGATTAC---ATGTAT---A---TGATTGTC-AATAT-T-TG-TTAAAA-TT-ACATGCATT------GCTTGC-A-CATT-ATGAAAAGGAC-CATTT-CGATTGGGTGAAAG-A------TACAT----------------------------AGTA-C-AT-CGACAG-C-AC-AAG------A-TATACAATTGGGCAGACGTTCTTTGTT----AAG----CA-----AATACG---AA-TAT-GT-CTAGTTT--------------GA-------------------A-----------------TG-----------------ACCG-ATCTAT-CACTTCGT-CTTGGCATTT--CA-T---A---T---G-------GTTTGTGTACTTTGTT--CAGAATAGA---ATGAAGTTTACTTGTGTCACAG-AAAGCCTAATGTATTTgtaa
gi|8 : tgtattttgaacagcttggcgtgttaagatttttctggatacaTGTAATA----TATC--T-ATGATN-TT--G-------TAAAAA-TTGTA--AT-A-----TA-AT---A---TGATAATC-ATTTT-T-AG-TAAAAAAGT-TACTGCATT------GTTTTT-A-CATT-GTCAAAAAGGT-TATTT-CGCGTAGGCAAAAA-ATC--ACAACATTCC---AA-AAGGATGTG----ATGTATAGTT-A-AT-GGACACTC-AC-AAG------A-TATACATTCCGGCTGAAATTCTCTGTTAAACAAG----TA-----A----G---AA-TGT-GT-C-AATTTATTATGACCAATACGT-------------------AATCG-------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGTTT--CA--------------TTACACGGTTTGTTTACTTTGTT--TTGAATA
gi|9 : ccacattcttgtaaaaatGTAA-A----TATCA-CCAT--TCATT--G-------TAAAAA-T-------T-G---TATG-ATTCAA---TGACAGTC-AATTC-TGAG-TAAAAA-GAATCCTTAATT------GTTTTA-A-CATC-A-CAAAAAGGCCTGTTT-CGTGTAGGCGAAAA-ATC--GCTACATT-C---AA-AAGGATGTG-TGTA-----AGTTAA-AG-GGACAGAC-AC-AAGA-----A-TATACACTCAGGTTGAAATTCTCTGTT----AAG----TA-----A----GTAAGA-TGTGGT-C-AATTTA-------------GT-------------------A-----------------T
blockSeqs : AAATA AC GA A AAATAGAA GTGTATGATTACATGTATA T C CT G A A A AGAAAA T A C T C A T C T A GG TCCAAAA TTGTA A T CA T A G GTATAT T T AAAC CAAA AATAGA TAA T G G T GTACTGTCCAATACTGTAATCATG CCG T A G GA GTACGTC T A CG AGTA AAAATT C CA TT A A TT G AA CTATACA T G TT CA C T T TT GT G AA . CATGTAC C G TC AC GC A GG AT A T TACAAATG G G T GG AA T T . GA T A T T A
blockSeqs : TA CC . . TGG TGTAATACAGTATAATA C . TG . . . G . . . . T . G . T A . . TCGAA TGTA . . T T . . A . C . . AATAC . . . . . ACATGGCCAATACGTTGTCGTG AG . . . . GTATAAT T T . GTA AGCCC T C TT . . A A . AGCTGT . A . . . . . . . . . . C . . . . . . . . A . . . . . . . T T . . T . G G .
blockSeqs : T C . . G AATTATTTATTTTTA C . T . . . T . . . . C . T . T G . . TCCAA GTT . . C T . . . . T . . A . . . . . GTGTGGCAAATACGAAATCGTG G . . . . TTAT T T . ATG AAATA C A TA . . . G . . . G . . . . . . . . . . C . . . . . . . . A . . . . . . . T . . . . . .
blockSeqs : A C . . G TTGTATCTATTATA C . T . . . T . . . . T . T . T A . . TCAA TT . . T G . . . . T . . A . . . . . TTATGACCAATACGTAATCGTG A . . . . TTAT T T . . AAAGC T T TC . . . T . . . G . . . . . . . . . . T . . . . . . . . G . . . . . . . .
blockSeqs : A C . . G TTGTAATATAATA T . T . . . T . . . . C . A . A A . . . AT . . T T . . . . A . . A . . . . . GTATG A . . . . TAT . A . . C T A . . . G . . . G . . . . . . . . . . C . . . . . . . . . . . . . . .
blockSeqs : A T . . G TTGTATGATTCAA T . T . . . G . . . . T . A . C . . . . . . . T A . . . . T . . A . . . . . GAATG A . . . . . . . . . . . . . . G . . . G . . . . . . . . . . . . . . . .
blockSeqs : C . . . . . G . . . . T . G . T . . . . . G . . . . . C . . A . . . . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : C** TTGTATNTATTATA*************** TT**** **** *********
originalCons : GTGTAA-A----TATCA-C-AT--TC-TT--G-------TAAAAA-T-GTA--AT-AC--TATN-AT---A---TGACAGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CATT-ATCAAAAAGGC-TNTTT-CGCGTAGGCGAAAA-ATC--GCTACATT-C---AA-AAGGATGTG-TGTATGTATAGTT-A-AC-GGACAGTC-AC-AAG------A-TATACACTCAGGTTGAAATTCTCTGTT----AAG----TA-----A----G---AA-TGT-GT-C-AATTTA-------------GT-------------------A-----------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGTTT--CAGT---A---T---GTTACTCGGTTTGTTTACTTTGTT--TTGAATAGA---A--AAGTTTACTTGTGTCGCAG-AAACCCCAATATATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-AT-C--AGTG--TAGGGAAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGATAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATGGCGGAATAC-TCTTCATTAGAANTTTTAATATACTCAAAAGCGAGTTGAATA
finalCons : GTGTAA-A----TATCAC--AT--TC-TT--G-------TAAAAATTGTATNTATTATA---------------TGACAGTC-AATTT-T-AG-TAAAAA-GT-TCCTTCATT------GTTTTT-A-CATT-ATCAAAAAGGC-TNTTT-CGCGTAGGCGAAAA-ATC--GCTACATT-C---AA-AAGGATGTGTT----GTATAGTT-A-AC-GGACAGTC-AC-AAG------A-TATACACTCAGGTTGAAATTCTCTGTT----AAG----TA-----A----G---AA-TGT-GT-C-AATTTA-------------GT-------------------A-----------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGTTT--CAGT---A---T---GTTACTCGGTTTGTTTACTTTGTT--TTGAATAGA---A--AAGTTTACTTGTGTCGCAG-AAACCCCAATATATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-AT-C--AGTG--TAGGGAAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGATAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATGGCGGAATAC-TCTTCATTAGAANTTTTAATATACTCAAAAGCGAGTTGAATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTATAAATTGTTGCCTCATTAGGAAGGCATATAGAGAAAACGTCGTTTTTGATTACTTCATTAGCAATGCCTGTATCTTATTTAAACAATTTGTGTAAATCCCAATAATGGAATGTGTTGTTTTAATTGGATTTTTTTTTTTGCTTAAATACAAATGAATTGGTTTTAGATTTCTTACATTCAAAAAATGATGTGTCTACTTTGGGTTTTATCCATCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 1111111 222222222 11111 111111 1 22222222 1111 111111 1111 2222 1111111111 55555555555555555555555555555555555555555555555555555555555555555555555 2222222222222 333333 11 11 2222222 111111111 1111111 22222222 11 1 11 1 1
lowQualScore : 222222 888 66 5 66 6666666 3 4 111111111 66666 3 4 4 777 4 4 1 222222 4 88 4 1 5 66 1 0 5 66 88888888 5 99999 0 0000 5 5 88 3 5 5 999999 5 1 0 0000 1111 4444444444 888 5 5 5 5 00000000000000000000000000000000000000000000000000000000000000000000000 8888 5 5 5 77 6666666666666 5 1 77 888888 0 666666 0 1 11 0 44 4 4 00 1 66 0 7777777 4 5 66 66 4 4 4 55 55 4 55 777777777 5555555 5 5 77 77 77 6 99 99 1 6 0 44444444 6 6 6 99 11 0 3 3 0 33 0 0 9 1 7 0
lowQualScore : ...... ... .. . .. ....... . . ......... ..... . . . ... . . . ...... . .. . . . .. . . . .. ........ . ..... . .... . . .. . . . ...... . . . .... .... .......... ... . . . . ....................................................................... .... . . . .. ............. . . .. ...... . ...... . . .. . .. . . .. . .. . ....... . . .. .. . . . .. .. . .. ......... ....... . . .. .. .. . .. .. . . . ........ . . . .. .. . . . . .. . . . . . .
lowQualScore : 666666 222 99 0 99 2222222 6 4 777777777 33333 7 4 4 888 0 4 9 888888 4 33 4 4 0 00 1 2 0 99 44444444 0 44444 1 6666 0 0 11 4 0 0 444444 0 1 1 6666 2222 1111111111 888 0 0 0 0 77777777777777777777777777777777777777777777777777777777777777777777777 9999 7 7 7 99 9999999999999 0 9 99 666666 8 888888 9 7 00 1 44 4 4 66 9 11 7 2222222 4 7 11 11 4 4 0 55 55 0 55 888888888 8888888 0 7 99 99 99 7 22 22 7 7 3 22222222 7 7 7 22 00 8 8 2 0 88 5 0 2 0 3 7
consensus : GTGTAA-A----TATCA-C-AT--TC-TT--G-------TAAAAATTGT-A-TN----T-AT-CGT-ATGACAGT-CAATT-TT-A-GTAAAAA-GT-TCCTTCATT------GTTT-TT-ACATT-ATCAAAAAGGC-T-NTTTCGCGTAGGCG-AAAAATC--GCTACATTC---AA-AAGGATGT-GTT---GTATA----GTT-A-AC-GGACAGTC-AC-AAG------A-TATACACTCAGGTTGAAATTCTCTGTT----AAG----TA-----A----G---AA-TGT-GT-C-AATTTA-------------GT-------------------A-----------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGTTT--CAGT---A---T---GTTACTCGGTTTGTTTACTTTGTT--TTGAATAGA---A--AAGTTTACTTGTGTCGCAG-AAACCCCAATATATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-AT-C--AGTG--TAGGGAAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGATAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATGGCGGAATAC-TCTTCATTAGAANTTTTAATATACTCAAAAGCGAGTTGAATA
Reference ( family-374 ) : GTGTAA-A----TATCA-C-AT--TC-TT--G-------TAAAAATTGT-A-TN----T-AT-TAT-ATGACAGT-CAATT-TT-A-GTAAAAA-GT-TCCTTCATT------GTTT-TT-ACATT-ATCAAAAAGGC-T-NTTTCGCGTAGGCG-AAAAATC--GCTACATTC---AA-AAGGATGT-GTT---GTATA----GTT-A-AC-GGACAGTC-AC-AAG------A-TATACACTCAGGTTGAAATTCTCTGTT----AAG----TA-----A----G---AA-TGT-GT-C-AATTTA-------------GT-------------------A-----------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGTTT--CAGT---A---T---GTTACTCGGTTTGTTTACTTTGTT--TTGAATAGA---A--AAGTTTACTTGTGTCGCAG-AAACCCCAATATATTTGCCAAAGAGAATTCAC-ATACAGTTTNATAAGGTATTTTAC-AT-C--AGTG--TAGGGAAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAC------C-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTTACTT-AGAAGATAGTGCTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTGAAAATATGGCGGAATAC-TCTTCATTAGAANTTTTAATATACTCAAAAGCGAGTTGAATA
gi|1 : -GTT---GTATA----GTT-A-AT-GGACAGTC-AC-AAA------A-TATACACTCAGGTTGAAATTCTCTGTT----AAGGAAGTA-----A----G---AA-TGT-GT-C-AATTTA-------------GC-------------------A-----------------TGTCCAATACGTAATCGTGA--A-ATA-AT-AACTTCAT-CCTGTCGTTT--GAGT---A---TTATGTTACTCGGCTTGTTTACCTTGTT--CTGAATAGA---ACAAAGTTTACTTGTGTCGCAG-ACACCCCAATACACTTGCCAAAGAGAACCCAC-ATACAGTTTTATAAGGTATTTTAC-AT-C--AGTG--TTGGGATT-------CCT-ACACTGTACAATA--TCGTA--TTGAAGTGC-ATCCTTCGCC-GCCTT-GTCC--GCCC--CGGTGC-TGC--CATGGACACCAATCATGC------C-AATGTG-ACCCGGAAT--CCAGCAGAACT--CAACTA--TTT-CA--C--CTTGTTCACCC-AGAAGACAGTGCTGGTTCAATA--------TA-TCTAAAAT-GCA-TGGA--TGATC--AACGTTCATGTTGCTCACCGACTGTAGACAAGATACTAG--AGCCTGAAAACATGGCAAAATAT-TTTTCATTGGAAAATTTAATATACTCAAAAGCGAGCTGAATA
gi|10 : AAAATATTTGCCAA-GAGAATTTAC-ATACAGTTTTATTAGGTATTTTAC-AT-C--AGTA--TAGGGAAT-------TTTTATAGTGTACAATA--TCGTA--TCGAAGTGC-ATCTTTTAC-----------T--GCTT--TGGTGT-TGC--CATGG---------ATACATGTACC-AATGTG-ACTTGGAAT--CCAGCAGAACT--CAATTA--TTT-TA--C--CTTGTTTACTT-AGAAGGTAGTGCTGGTTTAATATACAAATGTA-TCTAAAAT-GTA-TGGA--TGATC--AATGTTCATGTTGCTTATTCACTGTAGACAAGATA-GGG--AGTCTGAAAATATAG-GGAATACATCTTgctcctgcctcggctgtacaaattgttgcctcgttcggaacacatcatgctctactgtatcactgcaacgaccctattttggtccttcgatccgtctgtataaatatcaatcgtagaatgtttggcccgtttcacctcgaagaatttttgtttgaaaacagcgggatttgtttcagacttcctacattcagaaagtgatgcgtccaccttaggttttactaattt
gi|12 : TAAAGTGCCATCTTT-GCCTACTTTTGTCTTTGCTTGTTGGTGTGTGCAACATG----------ATAC------CCAGTGTGGACTTGGAATTCCCAGCAGAATTACCAGATAGCTTT-TAGGC--TGCGTTTACTTTAGAAGAAAGTGCTGGTTTAATA--------TAGTCGAAAATGGTATTGGAGGTGATCAAAATGTTCATGTTGCTTA-TGACTGTAGAC
gi|13 : tgtcgtatgaaggtgaA-A----TATCA----T--TC-TT--G-------TAAAA-TAGT-A-TT----TTAT-CGG-TTGA-AGT-CAATT-TT-A-GTAAAAA-GT-TCCTTCATT------GTTT-TT-ACA-T-ACCAA
gi|14 : aaaacgttgtaaaatagttaaaagaaacaaagtgtgtgcataagccgtttgtacattgtagtattaaatatttagtttttgtggtAG-AGCCCCAAATAGATTTGCTAAAGAAAATTCAA-GTAGAGTTTTATGAAATATTTCGA-GT-C--AAAG--TATGGGAT-------TAT-AAAATTTACAGTG--TCATA--TTGAAATGC-ATCTTTTGCC-GTTTT-GTCT--GCTT--TGGTGT-TGC--CATGG---------ATAg
gi|15 : -GTAAAAA-GT-TCCTACATT------GTTT-TT-ACATG-ATCAAAAAGGT-T-TTTTCGCGTGGGCG-AAAAATC--GCT
gi|16 : ataaatcgcatacattggataaattggataacctaaaatcacgagaatttnnnnnnnnnnnnnnnnnnnnCTTT-GTCC--GTTT--TAGTGT-TGC--CATGG---------ATAC------C-AATATG-ACTTTGAAT--CCAGCAGAAGT--CAACTA--TTT-TA--C--CTTGTTTACTT-ATAAGACAATGCTAGCTTAAAC--------TA-TCTGAATT-GCA-AGGA--T
gi|17 : gcaaaatgcat-AT-C--TGTA--TAGGAAAT-------TTT-ATAGTTTACAATA--TCGTA--TTGAAGTGC-ATCTTTTGCC-GCTGT-GTCT--GCTT--TGGTGT-TGC------------------------------TATG-ACTTGGAAT--CCAGCAGAACT--AAACTA--
gi|18 : TATTTAAG-AT-C--ATTA--TAGGGAAT-------TTT-ATAGCGTACAATA--TTGTA--TTGAAATGC-ATCTATTGCC-GCTTT-GCCT--TCTT--TGGTGT-TGC--TAT
gi|2 : tttattaggtacatacaGTGTAA-T----TATCA-C-AA--TC-TT--G-------TAAAAAT-GT-AATACAG-T-AT-AAT-ATGATAGT-TAATC-TT-A-GTAAACA-GT-TCCTGCATT------GTTT-TT-ACATA-GTCAAAATGGT-T-ATTTCGCGTTGGCG-AAAAATC--GCTACATTC---CATAAGGATGT-GAT---GTATATATAGTT-A-AT-GGACACTC-AC-AAG------A-TATACATTCCGGTTGAA----------------G----TA-----A----G---GA-TGT-GT-C-AGTTTA-------------GT-------------------A-----------------TG-----------------A--G-ATA-AT-AACTTCAT-TTTGGCGTTT--CATT---A---T---GTTACACAGTTTGTTTACTTTGCT--TTGAATA--------AAGTTT--------------------CAATATATTTGCCAAAGAGAATTTAT-ATACAGCTTAATAAGGTATTTTAC-AT-C--AGTG--TAGGGCAT-------TTT-ATAGTGTACAATA--TCGTA--TTGAAGTGC-ATCATTTGCC-GCTTT-ATCT--GCGT--TAGTGT-TGC--CATGG---------ATAT------C-AATATG-ACTTGGAAT--CCAGCAGAACT--CAACTA--TTT-TA--C--CTTGTTT--TT-AGAAGATAGTACTGGTTTAATA--------TA-TCTAAAAT-GTA-TGGA--TGATC--AGTGTTCATGTTGCTTATTGACTGTAGACAAGATA-GGG--AGTCTAAAAATATGGTGAAATAT-TTGTCATTAGAATTTTTAATATACTCAAAAGCAAGTTGAATA
gi|3 : TGTAA-AAATATATCA-C-AT--TT-CT--AAATAGAATAAAAATTGT-A-TC----T-AT-TAT-ATGACAGTCCAATTCCT-AGGTAAAAA-GT-CCGTTCATTAGAAAAGTTTATA-ACATTCACCAAGAAGGC-TGTTTTCGTGT-GGCGAAAAAATC--GCTACATTCCAAAA-AAGTATGTGGTT---GTATA----GTT-A-ACAAGACAGTC-ACGAAG------ATTATACACTCAGGTT-AAATTCTCTGTT----AAG----TAAATAGA----G---AATTGT-GTGC-AATTTA-------------GTACTGTCCAATACTGTAATCA-----------------TG-----------------A--AGATA-ATAAACTTCATGCCTGACGTTTGATATT---A---T---G-TACTCGGCTTGTTTACTTTGTTCGTTGAATAGGAGTA--AAGTTTACTTGTGTCGCAGAAAATTCCAATATA-TTGCTAGAGAGAATTTACAATACAGTT--AGAAGGTATTTTACAAT-CA-AGTGAATAGGGAAT-------TTT-ATG--GTACAATATTTCGTA--TTGA
gi|4 : ttaaaaacggtgtaaaaggttgaaaggaacaagagttatggccgataaacagttaatatacattgtttatttatgtagatatttttcagatttttgtT-A-TG----T-AT--GT-ATGACAGA-CAATT-TT-A-GTAAAAA-GC-TTTTTCATT------GTTT-T--ACAAT-ATGAAAAAGGC-T-TTTTCATGTAGGCG-TAAAATC--GCTTTATTCG--AA-AAGGATGT-GTTGTAGTATA----GTT-A-AC-GGAGAGTT-AC-AAG------A-TACACATTCAGCTTGAAA--ATCTGTT----AAG----CA-----A----G---AA-TGT-GT-C-AGTTTA-------------AC-------------------ATGGCCAATACGTTGTCGTG-----------------A--A-ATA-AA-AACTTAAT-CCTGGCGTTT--CAGT---ACGTC---GTTATTCGGTTTGTTTACTTAGCT--TTGAATAGAGT-A--AAGTTTACTTGTGTCGCAA-AAATACCAACATACTTGCCAAAGAGAATTTAT-ATATAATTTCATAAAGTATTTGAC-ATAC--A--A--AAAGGCATCTATACATCT-ATAGTGTACAATG--TCG-----TGA--------CTTTTGCC-GCTT-----------------TGT-TGC--CATGG---------ATA-------C-AAT
gi|5 : atataaattattagaagaaaatgtttgtgacagcaatattgatgaattttgtaataaaaagcaagagattagacaaaataagctacaagaATAAATTTGC-GAAGC-AATTCG--ATACAG---AACA--TTATTTT-C-AT-TTTAATG--AAAGACATAGCTGT-TTT-ATA-CATA-AACA--TAGTACATTGTAGT------TTTCGCT-GAATT-GCCT--GCTG--TGGCGT-TGT--CAAGG---------ATAC------C-AATATT-ACTTGCAAT--CTAGCAGAAT------CTA--TCTATA--CATCTTGTTTGGTT-CGTA-ATAGTGCTATTGTAAAA--------TT-TCTATATT-GTA-TGTA--TGATT--GATA-TCATATTGCTCATTGACTTTAGACAAAA-A-GGGGAAGTCTGTGAATATAGTAGAATGC-TC----TTAGCAGTTTT---------AAAGGCAAATTGAATaccgagatggctt
gi|6 : atGTGTCA-A----TATCAAC-AT--TC-TTTGG-------TAAAAAAATT-A-TT----T-AT-TTTTATGACAGT-TAATT-T--A-GTAAAAA-GT-TCTTTCATT------GTTT-TTTACATT-ACCAAAAAGGC-T-TTTTCGTGT-----------TCGGGCTA-AT----------GGATGT-GTT---GTATA----GTT-ATAT-GGACAGGCAAC-AAGGTATATA-TGTACATTCAGGTTGAAATTCTCTGTT----AAGCAAATA-----A----G---AA-TGT-GT-C-AATTTA-------------GTGTGGCAAATACGAAATC--G-----------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGCTT--CAGTATAA---T---GTTGCTCGGTTTGTTTACTTTGTT--TTGAATAGA---taataacatttgcgtcggtggtgaaaagtgttatctcagtctgaaatcgttaaaagaaaacattgtttgtgactaccagtactgctgcagcaacaactttattttgaactttcgacgcgcatctagcaatataatttctaaaatgct
gi|7 : cataacacaagttgttgtaacatgtattataaaataccgggtatttcagatttttTAT-A----TATCA-C-AT--TC-TT--G-------TAAAAAGTGT-A-TGATTAC-ATGTAT-ATGATTGT-CAATA-TT-T-GTTAAAA-TT-ACATGCATT------GCTT-GC-ACATT-ATGAAAAGGAC-C-ATTTCGATTGGGTG-AAAGAT------ACAT---------------------------A----GTA-C-AT-CGACAG-C-AC-AAG------A-TATACAATTGGGCAGACGTTCTTTGTT----AAG----CA-----AATACG---AA-TAT-GT-CTAGTTT--------------GA-------------------A-----------------TG-----------------ACCG-ATCTAT-CACTTCGT-CTTGGCATTT--CA-T---A---T---G-------GTTTGTGTACTTTGTT--CAGAATAGA---ATGAAGTTTACTTGTGTCACAG-AAAGCCTAATGTATTTgtaa
gi|8 : tgtattttgaacagcttggcgtgttaagatttttctggatacaCA-C-AT--TC-TT--G-------TAAAAATTGTAA-TA----T-AT-C-T-ATG--------ATN-TT---GTAAAAA-
gi|8 : cTGTAATA----TATC--T-ATGATN-TT--G-------TAAAAATTGT-A--A----T-AT-AAT-ATGATAAT-CATTT-TT-A-GTAAAAAAGT-TACTGCATT------GTTT-TT-ACATT-GTCAAAAAGGT-T-ATTTCGCGTAGGCA-AAAAATC--ACAACATTCC--AA-AAGGATGT-GAT---GTATA----GTT-A-AT-GGACACTC-AC-AAG------A-TATACATTCCGGCTGAAATTCTCTGTTAAACAAG----TA-----A----G---AA-TGT-GT-C-AATTTATTATGACCAATACGT-------------------AATCG-------------TG-----------------A--A-ATA-AT-AACTTCAT-CCTGGCGTTT--CA--------------TTACACGGTTTGTTTACTTTGTT--TTGAATAttgtaatataatatgataatcatttttagtaaaaaagttactgcattgtttttacattgtcaaaaaggttatttcgcgtaggcaaaaaatcacaacattccaaaaggatgtgatgtatagttaatggacactcacaagatatacattccggctgaaattctctgttaaacaagtaagaatgtgtcaatttattatgaccaatacgtaatcgtgaaataataacttcatcctggcgtttcattacacggtttgtttactttgttttgaata
gi|9 : ccacattcttgtaaaaatGTAA-A----TATCA-CCAT--TCATT--G-------TAAAAATTGT-A-TG------AT-TCA-ATGACAGT-CAATT-CTGA-GTAAAAA-GAATCCTTAATT------GTTT-TA-ACATC-A-CAAAAAGGCCT-GTTTCGTGTAGGCG-AAAAATC--GCTACATTC---AA-AAGGATGT-G-T---GTA-A----GTTAA-AG-GGACAGAC-AC-AAGA-----A-TATACACTCAGGTTGAAATTCTCTGTT----AAG----TA-----A----GTAAGA-TGTGGT-C-AATTTA-------------GT-------------------A-----------------T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTATAAATTGTTGCCTCATTAGGAAGGCATATAGAGAAAACGTCGTTTTTGATTACTTCATTAGCAATGCCTGTATCTTATTTAAACAATTTGTGTAAATCCCAATAATGGAATGTGTTGTTTTAATTGGATTTTTTTTTTTGCTTAAATACAAATGAATTGGTTTTAGATTTCTTACATTCAAAAAATGATGTGTCTACTTTGGGTTTTATCCATCT