lowQualScore : 22222222222222 33333333333333333333333 111111111 33333333333333333333333 2222222 2222
lowQualScore : 1 444 2 5555 55 1 1 1 77777777777777 1 00000000000000000000000 1 1 444 6666666 1 2 22 555 33 1 444444444 33 1 555 22 1 1 1 6666666 444 1 11111111111111111111111 1 2222222 1 1 44 22 5555 222 6666 1 1
lowQualScore : . ... . .... .. . . . .............. . ....................... . . ... ....... . . .. ... .. . ......... .. . ... .. . . . ....... ... . ....................... . ....... . . .. .. .... ... .... . .
lowQualScore : 8 888 3 2222 44 8 5 5 33333333333333 5 00000000000000000000000 5 5 666 6666666 4 9 00 444 44 4 777777777 44 4 444 00 5 4 4 6666666 666 5 55555555555555555555555 5 0000000 5 5 44 88 2222 444 3333 7 8
consensus : GGCGCT-TGACGTT---TCANA----T-NAAT-ATA-A-------T---AAAAA-AAA-------N-------A-T-----A-TTCCT-G---TG-------T-A-CT--AA---CTTA--T-TGA---C---AA--T-AAG---TT--A-G-T-A-------CA---C-AGGAAT-----A-T-------N-------TTT-TTTTT---AT-TAT-AT-TT-A----TT--TGA---A-AACGTCA-AGCGCC
Reference ( gi|6 ) : GGCGCT-TGACGTT---TCAAA----T-AAAT-ATA-A-------T--TAAAAA-AAA-------T-------A-T-----A-TTCCT-G---TG-------T-A-CT--AA---CTTA--T-TGA---C---AA--T-AAG---TT--A-G-T-A-------CA---C-AGGAAT-----A-T-------A-------TTT-TTTTTA--AT-TAT-AT-TT-A----TT--TGA---A-AACGTCA-AGCGCC
gi|5 : GGCGCT-TGACGTT---TCATA----T-CAAT-ATA-A-------A--TAAGAA-AAA-------A-------A-T-----A-TTCCT-G---TG-------T-A-CT---A---CTTA--T-TGT---C---AA--T-AAG----T--A-G-T-A-------CA---C-GGGAATA----A-T-------T-------TTT-TTTTTT--AT-TAT-AT-TG-A----TA--TG----A-AACGTCA-AGCGC
gi|2 : acaGGCGCT-TGACGTT---TCAAA----T-AAATTATACA-------T----AAAA-AAA-------T-------A-------A-TTCCT-G---TG-------T-A-CT--AA---CTTA--T-TGAC--C---AAC-T-AAG---TTTCA-GCT-A-------CACAGC-AGGAAT-----A-T-------A-------TTTCTTTTTA--AT-TAT-AT-TT-AT---TT--TGA---A-AACG
gi|7 : acaGGCGCT-TGACGTT---TCAAA----T-AGAT-ATA-A-------T-------A-AAA-------T---------T-----A-TTCCT-G---TG-------T-A-CT--AAC--CTTA--T-TGACGTC---AA--T-AAG---TT--A-G-T-AAC-----CA---CAAGGAAT-----A---------A-------TTT-TTTT----AT-TAT-A--TT-A----TT--TG------AATGTCAGAGCct
gi|10 : gGGCGCT-TGACGTT---TCATA----TCAAAT-ATA-A-------T---AATAA-TAA-------T-------A-A-----AATTCCT-G---TG-------T-A-CT--AA---CTTA--T-T-----C---AA--T-AAG---TT--A-G-T-A-------CA---C-AGGAAT-----A-T---------------TTT-TTTTC-----------T-TT-A----TT-----------ATGTCA-AGCGCCtg
gi|10 : caGGCGCT-TGACAT-------AA----T-AAA------------------GAAAA-AAA---------------A-T-----A-TTCCT-G---TG-------T-A-CT--AA---CTTA--T-TGA--------A--T-AAG---TT--A-G-T-A-------CA---C-AGGAAT-----T-TT------A-------TTA-TTATTA---T-TAT-AT-TTGA----TA--TGA---A-A-CGTCA-AGCGCCt
gi|4 : caGGCGCT-TGACGTT---TCATA----T-CAAT-ATA-A-------T--AAACAA-AAA-------A-------A-T-----A-TTCCT-G---CG-------T-ACCT--AA---CTTA--T-C-C---C---AA--T--AG---TT--A-G-T-A-------CA---C-AGGAAT-----A-T-------T-------TTC-TTTTT----T-TCT-A---T-A----TT--CGAATGA-AACGTCA-AGCACCt
gi|4 : GGTGCT-TGACGTT---TCATT----C-GAAT-ATA-G-------A--AAAAAA-GAA-------A-------A-T-----A-TTCCT-G---TG-------T-A-CT--AA---C-TA--T-TGG-------GA--T-AAG---TT--AGG-T-A-------CG---C-AGGAAT-----A-T-------T-------TTT-TTGTTT--AT-TAT-AT-TG-A----TA--TG----A-AACGTCA-AGCGCCtg
gi|14 : GGCGCT-TGACGTT---TCATA----T-CAAT-ATA-A-------T--AAGAAA-AAA---------------A-T-----A-ATCCT-G---CG-------T-A-CT--AA---CTTA--T-TGT---C---AA--T-AAG---TT--A-G-T-A-------Ctg
gi|13 : acaGGCGCT-TGGCGTT---TCAAA----T-AAAT-A---A-------T--TAGAAA-AAA-------G-------AAT-----A-TTC-T-G----G-------T-A-CT--AA---CTTA--T-TGT---C---AT--TTAAG---GT--A-G-T-A-------CA---C-AGGAAT-----A-T-------T-------TTT-TTTTTT--CT-TAT-
gi|3 : caGGCGCT-TGACGT-------AA----T-AA----TA-AGATTTTTT--T----------------T-------T-T-----A-TTCCT-G---TG-------T-A-CT--AA---CTTA--T-TGA---C---AAGGT-AAGTAATT--A-G-T-A-------CA---C-AGGAAT-----A-A-------AAAAAAAGTCT-T-------AT-TAT-AT-TG-A----TT--TG----A-AACGTCA-AGCGCCtc
gi|3 : acaGGCGCT-TGACGTT---TCAAA----T-CAAT-ATA-A-------T-------A-AGACTTTTTTT-------T-T-----A-TTCCT-G---TG-------T-A-CT--AATTACTTACCT-TGT---C---AA--T-AAG---TT--A-G-T-A-------CA---C-AGGAAT-----A-A-------A----------------A--AA-AAA-ATCTT-A----TT----A---T-TACGTCA-AGCGCCtg
gi|1 : acaGGCGTT-TGACGTTGTATCAAAGAATC-AAAT-ATA-A-------T-------A-AGA-------TTTTTTTTG-T-----A-TTCCT-G---TG-------T-A-CT--AA---CTTC--T-TGA---C---AG--T-AAG---TT--A-T-A-A-------AA---C-AGGAATAAAAAA-A-------A-------TTC-TT------AT-TAT-AT-TG-A----TT--TG----A-AACGTCA-A-CGCCtg
gi|1 : gcGGCG-T-TGACGTT---TCAAA----T-CAAT-ATA-A-------T------AA-GAA-------T-------T-TTTTTTA-TTCCT-G---TT-------T-T-AT--AA---CTTA--C-TGT---C---AA--G-AAG---TT--A-G-T-A-------CA---C-AGGAAT-----A-CAAAAAAAA-------TCT-T-------AT-TAT-AT-TT-GATTCTT--TGAT--ACAACGTCA-AACGCC
gi|12 : gcGGCGCT-TTCCGT-----CAAA----T-AA-T-ATG-A-----------AAGAA-AAA-------A-------A-------A-TTCCT-G---TG-------T-A-CT--AA---CTTA--T-TG--------AA--T-AAG---
gi|9 : acaGGCATT-TGACGTT---TAAAA----T----T-TTA-A-------T--T--GAA-AAA-------T---------T-----C-TTCCT-G---TT-------A-A-CA--AA---CTT---T-TGA---C---AA--T-A-----TT--A-G-T-AGTTTGATAA---C-GGGAAT-----A---------A-------TTT-TTaaaaaaaaagtatattccatgtgtactaattattgaataagaaa
gi|17 : acaggacactttgacgattttaatgaaccGGCGCT-TGACGTT---TCAAA----T-AAAT-AT-----------------AA-GAATTTTCT-T-------T-T-----A-TTCCT-G---TG-------T-A-tgt
gi|18 : gctaacGGCGCT-TGACATT---TTATA----T-CAAT-ATA-A-------T---AAAAA-AAA-------tg
gi|5 : GCGCT-TGACGTT---TCATA----T-CAAT-ATA-A-------T--AAAAAA-AAA-------A-------A-TT----A-TTCCC-G---TG-------T-A-CT--A----CTTA--T-TGA---C---AA--T-AAG---T---A-G-T-A-------CA---C-AGGAAT-----A-T-------T-------TTT-TTCTTA--TT-TAT-AT-TG-A----TA--TG----A-AACGTCA-AGCGCCtg
gi|8 : acaGCGCT-TGACGTT---TCTTA----T-CAAT-ATA-T-------TAATAAAAA-AAA---------------A-T-----A-TTC-------TG-------T-A-CT--AAA--CTTA--T-TGA--------A--T-AAG---TT--A-G-T-A-------CA---C-A-GAAT-----------------------TTT-TTTTTT--AT-TAT-A--TA-A----TA--TGA---C-AACGTCA-AGCGC
gi|8 : agcGCGCT-TGACGTTG--TCATA----T-TA-T-ATA-A-------T--AAAAAA-AAA-----------------------A-TTC-T-G---TG-------T-A-CT--AA---CTTA--T-T-----C---AA--T-AAGT--TT--A-G-T-A-------CA-------GAAT-----A-T---------------TTT-TTTTT---AT-TA--AT-AT-A----TTGATAAG--A-AACGTCA-AGCGCtgt
gi|11 : agcGCGCT-TGACGTT---TCATA----T-AA-T-ATA-A-------T--AATAAT-AAA-------A-------A-T-----A-TTCCT-G---TG-------T-A-CT--AA---CTTA--T-T-----C----A--T-AAG---TT----G-TAA-------CAGC-C-AGGAAT-----A-T-------T-------TTT-TTTCTA-----TAT-AT-tgt
gi|7 : GCTCTGACATT----CAAA----T-AA-T-ATA-A-------T----AAAA-AAA-------T---------T-----A-TTCCTTG---TGGT-----T-A-CT--AA---CTTA--T-TGA---CGTCAA--T-AAGG--TT--A-G-T-A-------CA---C-AGGAAT-----A---------A-------TTT-T-------AT-TAT-AT-CT-A----TT--TG----A-AACGTCA-AGCGCCgtcaacgcgcctgt
gi|2 : gTT---TCAAAA---T-AAAT-ATA-A-------T--TAAAAAGAAA-------T-------A-T-----A-TTCCT-GCTGTG-------T-AGCTGAAA---CTTAG-T-TGGT--C---AA--T-AAG---TT--A-G-T-A-------CA---C-AGGAAT-------T-------A-------TTT-TTTT----ATGTATAAT-TT-A----TT--TG----A-AACGTCA-AGCGCCtg
gi|16 : acaA----T-CAAT-ATA-A-------TAAGAAGAA-AAA-------A-------A-T-----A-TCCCT-G---TG-------T-A-CT--AA---CTTA--T-C-------------------------A-G-T-A-------CA---C-ATGAAT-----acgct
gi|11 : tAT-ATA------------TAGAAA-AAA-------A-------A-T-----A-TTCCT-GGC-TG-------TTA-C---AA---CTTA--T--GA--------A--T-AAG---TT--A-G-T-A-------CA---C-AGGAAT-----A-T-------T-------TTT-ATTATT--AT-TAT-A--TT-A----TA--TG----A-AACGTCA-AGCGC
gi|13 : -ATA-A-------G--AAAAAA-AAA-------A-------A-T-----A-TTCCT-G---TG-------T-A-CT--AC---CTTA--AATGA---C---AA--T-AAG---TT--A-G-T-A-------C----C-A-GAAT-----ATT-------C-------TTT-TTTCTA--AT---T-AT-TT-A----TT--TG----A-AACGCCA-AGCGCCgtcaacgcgcctgt
gi|9 : caAA-AAA-------T---------T-----A-TTCCC-G---TTATCAAACT-A-CT--AA-----TA--T-TGT---C---AA----AAG---TT--T-G-T-T-------AA---C-AGGAAG-----A---------A-------TTT-TTC--A--AT-TAA-A-----A----TT--TTA---A-A-CGTCA-AATGCCtc
gi|16 : acaggacactttgacgattttaatgaacc-----A-TTCAT-G---TG-------T-A-CT-------------------------GA--T-AAG---TT--A-G-T-A-------CA---C-AGGGAT-----A-T-------T-------TTT-TTCTTCTTAT-TAT-AT-TG-A----Ttgt
gi|14 : tG-------T-A-CT--AA---CTTA--T-TGA---C---AA--T-AAG---TT--A-G-T-A-------CG---C-AGGATT-----A-T---------------TTT-TTTCTT--AT-TAT-AT-TG-A----TA--TG----A-AACGTCA-AGCGCC
gi|12 : aca---CTTA--T-T-----C---AA--T-AAG---TT--A-G-T-A-------CA---C-AGGAAT-------T-------T-------TTT-TTCTT----T-CAT-A--TT-A----TT--TG-------ACGGAA-AGCGCC
gi|17 : aca-T-A-------CA---C-AGGAAT-----A-A-------AAGAAAA-TTC-TT----------AT-AT-TT-A----TT--TG----A-AACGTCA-AGCGCCaaaaaaaaagtatattccatgtgtactaattattgaataagaaa
gi|18 : gctaac-------TTT-TTTTT---AT-TAT-AT-TG-A----TA--T-A---A-AATGTCA-AGCGCCtg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): GACCTACTGATCAGTAAACTACAATTTCAGTTTTAATTAATTGATTCTTTGTGGAAATCATTAATTTTAAAGATTAGAC
Unaligned ( gi|19 ): CATTGTGGAAATTCAAGGCCAAAGATCAATTCACA
Alignments
lowQualScore : 2222222222222222222222222 22222 1111111 1111 1 1111 222222
lowQualScore : 1 6 5 2 2 33 444 4444444444444444444444444 2 2 2 2 666 2 33 22222 2 33 2 2 2222222 888 2 555 8888888 44 4444 1 2222 888888 4
lowQualScore : . . . . . .. ... ......................... . . . . ... . .. ..... . .. . . ....... ... . ... ....... .. .... . .... ...... .
lowQualScore : 0 2 3 5 4 22 222 7777777777777777777777777 5 5 5 7 999 5 44 00000 5 77 7 7 3333333 999 9 777 8888888 66 5555 0 5555 666666 4
consensus : GGCGCTTGACGTTTCANATCAA-TATA-AT-A--A-A-AA-----AAA------NA---------TA-TTCC-TGTGTA-CT-AA---CTT-A--TTG----CAA-TAAGTT--AG-T-A-------CA---C-AGGAATA-TNTTTT-------T--TTT--A-TTATATTTA----TTTGA---A-AACGTCA-AGCGCC
Reference ( family-3605 ) : GGCGCTTGACGTTTCANATNAA-TATA-AT-A--A-A-AA-----AAA------NA---------TA-TTCC-TGTGTA-CT-AA---CTT-A--TTGA---CAA-TAAGTT--AG-T-A-------CA---C-AGGAATA-TNTTTT-------T--TTT--A-TTATATTTA----TTTGA---A-AACGTCA-AGCGCC
gi|1 : GGCG-TTGACGTTTCAAATCAA-TATA-AT-A--A-G-AATTTTT---------TT---------TA-TTCC-TGTTTT-AT-AA---CTT-A--CTGT---CAA-GAAGTT--AG-T-A-------CA---C-AGGAATA-CA----AAAAAAAT--CTT--A-TTATATTTGATTCTTTGAT--ACAACGTCA-AACGCC
gi|10 : gcGGCGCTTGACGTTTCATATCAAATATA-AT-A--A-T-AA-----TAA------TA---------AAATTCC-TGTGTA-CT-AA---CTT-A--TT-----CAA-TAAGTT--AG-T-A-------CA---C-AGGAATA-TTTTTT-------T--TCT----------TTA----TT---------ATGTCA-AGCGCC
gi|11 : caGCGCTTGACGTTTCATAT-AA-TATA-AT-A--ATA-AT-----AAA------AA---------TA-TTCC-TGTGTA-CT-AA---CTT-A--TT-----C-A-TAAGTT---G-TAA-------CAGC-C-AGGAATA-TTTTTT-------T--TCT--A--TATATt
gi|12 : ---CTT-A--TT-----CAA-TAAGTT--AG-T-A-------CA---C-AGGAAT--TTTTTT-------T--CTT----TCATA-TTA----TTTG-------ACGGAA-AGCGCCgtcaacgcgcctgt
gi|12 : acaATA-AG-A--A-A-AA-----AAAAG----TA---------TA-TTCCATGTGTA-CT-AA----TT-A--TTG-----AA-TAAGaaaaaaaaagtatattccatgtgtactaattattgaataagaaa
gi|13 : acaggcgctttccgtcaaataatatgaaagaaaaaaaattcctgtgtactaacttattga-A--A-A-AA-----AAA------AA---------TA-TTCC-TGTGTA-CT-AC---CTTAA--ATGA---CAA-TAAGTT--AG-T-A-------C----C-A-GAATATTCTTTT-------T--TCT--A-AT-TATTTA----TTTG----A-AACGCCA-AGCGCCaaa
gi|14 : caGGCGCTTGACGTTTCATATCAA-TATA-AT-A--A-G-AA-----AAA------AA---------TA-ATCC-TGCGTA-CT-AA---CTT-A--TTGT---CAA-TAAGTT--AG-T-A-------Ctcttattc
gi|16 : acaATCAA-TATA-AT-A--A-G-AAGAA--AAA------AA---------TA-TCCC-TGTGTA-CT-AA---CTT-A--TC-----------------AG-T-A-------CA---C-ATGAAT
gi|17 : tGGCGCTTGACGTTTCAAATAAA-TAT------------AA-----GAATTTTCTTT---------TA-TTCC-TGTGTA-
gi|18 : gctaacGGCGCTTGACATTTTATATCAA-TATA-AT-A--A-A-AA-----AAA------tg
gi|2 : GGCGCTTGACGTTTCAAATAAATTATACAT----A-A-AA-----AAA------TA----------A-TTCC-TGTGTA-CT-AA---CTT-A--TTGAC--CAACTAAGTTTCAGCT-A-------CACAGC-AGGAATA-TATTTC-------T--TTTTAA-TTATATTTAT---TTTGA---A-AACGtg
gi|3 : acaGGCGCTTGACGTTTCAAATCAA-TATA-AT-A--A-------------------GACTTTTTTTTTA-TTCC-TGTGTA-CT-AATTACTT-ACCTTGT---CAA-TAAGTT--AG-T-A-------CA---C-AGGAATA-ct
gi|4 : acaggcgcttgacgtaataataagatttttttttGGCGCTTGACGTTTCATATCAA-TATA-AT-A--A-ACAA-----AAA------AA---------TA-TTCC-TGCGTACCT-AA---CTT-A--TC-C---CAA-T-AGTT--AG-T-A-------CA---C-AGGAATA-TTTTCT-------T--TTT----TTCTA--TA----TTCGAATGA-AACGTCA-AGCACCtg
gi|5 : GCGCTTGACGTTTCATATCAA-TATA-AT-A--A-A-AA-----AAA------AAAT-------TA-TTCC-CGTGTA-CT--A---CTT-A--TTGA---CAA-TAAG-T--AG-T-A-------CA---C-AGGAATA-TTTTTT-------T--CTT--ATTTATATTGA----TATG----A-AACGTCA-AGCGCCtg
gi|6 : acaGGCGCTTGACGTTTCAAATAAA-TATA-ATTA--A-A-AA-----AAA------TA---------TA-TTCC-TGTGTA-CT-AA---CTT-A--TTGA---CAA-TAAGTT--AG-T-A-------CA---C-AGGAATA-TATTTT-------T--TTTA-A-TTATATTTA----TTTGA---A-AACGTCA-AGCGCC
gi|7 : GGCGCTTGACGTTTCAAATAGA-TATA-AT-A--A-A-A----------------T---------TA-TTCC-TGTGTA-CT-AAC--CTT-A--TTGACGTCAA-TAAGTT--AG-T-AAC-----CA---CAAGGAATA---ATTT-------T--TTT--A-TTATA-TTA----TTTG------AATGTCAGAGC
gi|8 : gGCGCTTGACGTTTCTTATCAA-TATA-TT-AATA-A-AA-----AAA------AA---------TA-TTC----TGTA-CTAAA---CTT-A--TTG-----AA-TAAGTT--AG-T-A-------CA---C-AGA---A-TTTTTT-------T--TTT--A-TTATA-TAA----TATGA---C-AACGTCA-AGCGCtg
gi|9 : agcGGCATTTGACGTTTAAAAT----TTTA-AT-T--G-A-AA-----AA--------T---------TC-TTCC-TGTTAA-CA-AA---CTT----TTGA---CAA-TA--TT--AG-T-AGTTTGATAA---C-GGGAATA--ATTTT-------TGGTTC--A-TTAtgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACCTACTGATCAGTAAACTACAATTTCAGTTTTAATTAATTGATTCTTTGTGGAAATCATTAATTTTAAAGATTAGAC
Unaligned ( gi|19 ): CATTGTGGAAATTCAAGGCCAAAGATCAATTCACA
Alignments
lowQualScore : 11111 11111111111 33333 11111111111 1111 1111 222222
lowQualScore : 3 1 4 5 2 2 2 33 555 11111 44444444444 2 2 33 2 2 444 33 33 00000 2 2 33 2 2 7777777 777 2 00000000000 7777777 33 1111 4 0000 666666
lowQualScore : . . . . . . . .. ... ..... ........... . . .. . . ... .. .. ..... . . .. . . ....... ... . ........... ....... .. .... . .... ......
lowQualScore : 1 0 3 7 9 9 7 77 333 33333 33333333333 9 9 99 9 9 444 44 44 44444 5 5 44 4 4 6666666 888 5 99999999999 5555555 99 9999 2 4444 666666
consensus : GGCGCT-TGACGTTTCANATCAA-TAT-A-AT-A--A-A-AA-----AAAAA---------TA-TTCCT-GTG--TA-CT-AA---CTT--A--TTG----CAA-TAAG-TT--AG-T-A-------CA---CA-GGAAT------A--TNTTTT-------T--TTT--A-TTATATTTA----TTTGA---A-AACGTCAAGCGCC
Reference ( family-3605 ) : GGCGCT-TGACGTTTCANATCAA-TAT-A-AT-A--A-A-AA-----AAANA---------TA-TTCCT-GTG--TA-CT-AA---CTT--A--TTG----CAA-TAAG-TT--AG-T-A-------CA---CA-GGAAT------A--TNTTTT-------T--TTT--A-TTATATTTA----TTTGA---A-AACGTCAAGCGCC
gi|1 : GGCG-T-TGACGTTTCAAATCAA-TAT-A-AT-A--A-G-AATTTTT---TT---------TA-TTCCT-GTT--TT-AT-AA---CTT--A--CTGT---CAA-GAAG-TT--AG-T-A-------CA---CA-GGAAT------A--CA----AAAAAAAT--CTT--A-TTATATTTGATTCTTTGAT--ACAACGTCAAACGCC
gi|10 : gcGGCGCT-TGACGTTTCATATCAAATAT-A-AT-A--A-T-AA-----TAATA---------AAATTCCT-GTG--TA-CT-AA---CTT--A--TT-----CAA-TAAG-TT--AG-T-A-------CA---CA-GGAAT------A--TTTTTT-------T--TCT----------TTA----TT---------ATGTCAAGCGCC
gi|11 : caGCGCT-TGACGTTTCATAT-AA-TAT-A-AT-A--ATA-AT-----AAAAA---------TA-TTCCT-GTG--TA-CT-AA---CTT--A--TT-----C-A-TAAG-TT---G-TAA-------CAGC-CA-GGAAT------A--TTTTTT-------T--TCT--A--TATATt
gi|12 : ---CTT--A--TT-----CAA-TAAG-TT--AG-T-A-------CA---CA-GGAAT---------TTTTTT-------T--CTT----TCATA-TTA----TTTG-------ACGGAAAGCGCCgtcaacgcgcctgt
gi|12 : aca---CTT--A--TT-----CAA-TAA--TT--AG-T-A-------CA---CATGGAAT------A--TACTTT-------T--TTT--T-TCTTATTCA----aaaaaaaaagtatattccatgtgtactaattattgaataagaaa
gi|13 : acaggcgctttccgtcaaataatatgaaagaaaaaaaattcctgtgtactaacttat-A--A-A-AA-----AAAAA---------TA-TTCCT-GTG--TA-CT-AC---CTTAAA--TGA----CAA-TAAG-TT--AG-T-A-------C----CA--GAAT------AT-TCTTTT-------T--TCT--A-AT-TATTTA----TTTG----A-AACGCCAAGCGCCaaa
gi|14 : caGGCGCT-TGACGTTTCATATCAA-TAT-A-AT-A--A-G-AA-----AAAAA---------TA-ATCCT-GCG--TA-CT-AA---CTT--A--TTGT---CAA-TAAG-TT--AG-T-A-------Ctcttattc
gi|16 : acaATCAA-TAT-A-AT-A--A-G-AAGAA--AAAAA---------TA-TCCCT-GTG--TA-CT-AA---CTT--A------------------TC--AG-T-A-------CA---CA-TGAAT------
gi|17 : t-T-A-------CA---CA-GGAATAAAAGAA--AATTC------------------TTATATTTA----TTTG----A-AACGTCAAGCGCC
gi|18 : gctaacGGCGCT-TGACATTTTATATCAA-TAT-A-AT-A--A-A-AA-----AAAtg
gi|2 : GGCGCT-TGACGTTTCAAATAAATTAT-ACAT----A-A-AA-----AAATA----------A-TTCCT-GTG--TA-CT-AA---CTT--A--TTGAC--CAACTAAG-TTTCAGCT-A-------CACAGCA-GGAAT------A--TATTTC-------T--TTTTAA-TTATATTTAT---TTTGA---A-AACGtg
gi|3 : acaGGCGCT-TGACGTTTCAAATCAA-TAT-A-AT-A--A-------------GACTTTTTTTTTA-TTCCT-GTG--TA-CT-AATTACTT--ACCTTGT---CAA-TAAG-TT--AG-T-A-------CA---CA-GGAAT------A--ct
gi|4 : acaggcgcttgacgtaataataagatttttttttGGCGCT-TGACGTTTCATATCAA-TAT-A-AT-A--A-ACAA-----AAAAA---------TA-TTCCT-GCG--TACCT-AA---CTT--A--TCC----CAA-T-AG-TT--AG-T-A-------CA---CA-GGAAT------A--TTTTCT-------T--TTT----TTCTA--TA----TTCGAATGA-AACGTCAAGCACCtg
gi|5 : GGCGCT-TGACGTTTCATATCAA-TATAA-AT-A--A-G-AA-----AAAAA---------TA-TTCCT-GTG--TA-CT--A---CTT--A--TTGT---CAA-TAAG--T--AG-T-A-------CA---CG-GGAAT------AATTTTTTT-------T--TTT--A-TTATATTGA----TATG----A-AACGTCAAGCGCtg
gi|6 : acaGGCGCT-TGACGTTTCAAATAAA-TAT-A-ATTA--A-A-AA-----AAATA---------TA-TTCCT-GTG--TA-CT-AA---CTT--A--TTGA---CAA-TAAG-TT--AG-T-A-------CA---CA-GGAAT------A--TATTTT-------T--TTT--AATTATATTTA----TTTGA---A-AACGTCAAGCGCC
gi|7 : GCTCTGACATT-CAAAT-AA-TAT-A-AT-A--A-A-AA-----AAT-----------TA-TTCCTTGTGGTTA-CT-AA---CTT--A--TTGACGTCAA-TAAGGTT--AG-T-A-------CA---CA-GGAAT------A--A------------T--TTT--A-TTATATCTA----TTTG----A-AACGTCAAGCGCC
gi|8 : gGCGCT-TGACGTTTCTTATCAA-TAT-A-TT-AATA-A-AA-----AAAAA---------TA-TTC----TG--TA-CTAAA---CTT--A--TTG-----AA-TAAG-TT--AG-T-A-------CA---CA-GA---------A--TTTTTT-------T--TTT--A-TTATA-TAA----TATGA---C-AACGTCAAGCGCtg
gi|9 : agcGGCATT-TGACGTTTAAAAT----TTT-A-AT-T--G-A-AA-----AAT-----------TC-TTCCT-GTT--AA-CA-AA---CTT-----TTGA---CAA-TA---TT--AG-T-AGTTTGATAA---CG-GGAAT------A---ATTTT-------TGGTTC--A-TTAtgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACCTACTGATCAGTAAACTACAATTTCAGTTTTAATTAATTGATTCTTTGTGGAAATCATTAATTTTAAAGATTAGAC
Unaligned ( gi|19 ): CATTGTGGAAATTCAAGGCCAAAGATCAATTCACA
Alignments
lowQualScore : 11111111111111111 22222 1111111111 11111 1111 222222
lowQualScore : 2 1 88 5 33 2 2 33 222 55555555555555555 5555 2 33 2 2 444 33 33 77777 2 2 33 2 2 8888888 888 9999999999 8888888 44 11111 5 1111 222222
lowQualScore : . . .. . .. . . .. ... ................. .... . .. . . ... .. .. ..... . . .. . . ....... ... .......... ....... .. ..... . .... ......
lowQualScore : 9 0 11 0 44 5 5 22 555 11111111111111111 0000 5 44 5 5 444 44 44 22222 5 5 77 5 5 1111111 333 6666666666 1111111 22 99999 2 4444 222222
consensus : GGCGCT-TGACGTTTCANAT-CAA-TA--T-A-ATA--A-A-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT-AA---CTT--A--TTG----CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TN------TTTT-------T--TTT--A-TTATATTTA----TTTGA---A-AACGTCAAGCGCC
Reference ( family-3605 ) : GGCGCT-TGACGTTTCANAT-CAA-TA--T-A-ATA--A-A-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT-AA---CTT--A--TTG----CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TN------TTTT-------T--TTT--A-TTATATTTA----TTTGA---A-AACGTCAAGCGCC
gi|1 : GGCG-T-TGACGTTTCAAAT-CAA-TA--T-A-ATA--A-G-A---------ATTTTTTT-------TATTCCT-GTT--TT-AT-AA---CTT--A--CTGT---CAA-GAAG-TT--AG-T-A-------CA---CAGGAATA--CA----------AAAAAAAT--CTT--A-TTATATTTGATTCTTTGAT--ACAACGTCAAACGCC
gi|10 : gcGGCGCT-TGACGTTTCATAT-CAAATA--T-A-ATA--A-T-A---------A-------TAATA-AAATTCCT-GTG--TA-CT-AA---CTT--A--TT-----CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TT------TTTT-------T--TCT----------TTA----TT---------ATGTCAAGCGCC
gi|11 : caGCGCT-TGACGTTTCATAT--AA-TA--T-A-ATA--ATA-A---------T-------AAA-A-ATATTCCT-GTG--TA-CT-AA---CTT--A--TT-----C-A-TAAG-TT---G-TAA-------CAGC-CAGGAATA--TT------TTTT-------T--TCT--A--TATATt
gi|12 : GGCGCT-TTCCGT--CAAAT--AA-TA--T-G-A-A--A-G-A---------A-------AAA-A-A-ATTCCT-GTG--TA-CT-AA---CTT--A--TTG-----AA-TAAG-gtcaacgcgcctgt
gi|12 : acaTTTCTTATTCAA-TAATT-A-GTA--C-A-C---------A-------TGG-A-ATATACTT-TTT--TT-TT------CTT--A--TT-----CAA-TAAG-TT--AG-T-A-------CA---CAGGAAT---TT------TTTT-------T--CTT----TCATA-TTA----TTTG-------ACGGAAAGCGCCaaaaaaaaagtatattccatgtgtactaattattgaataagaaa
gi|13 : acaA--A-A-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT-AC---CTTAAA--TGA----CAA-TAAG-TT--AG-T-A-------C----CA-GAATAT-TC------TTTT-------T--TCT--A-AT-TATTTA----TTTG----A-AACGCCAAGCGCC
gi|14 : caGGCGCT-TGACGTTTCATAT-CAA-TA--T-A-ATA--A-G-A---------A-------AAA-A-ATAATCCT-GCG--TA-CT-AA---CTT--A--TTGT---CAA-TAAG-TT--AG-T-A-------Ctcttattc
gi|16 : acaAT-CAA-TA--T-A-ATA--A-G-A---------AGAA----AAA-A-ATATCCCT-GTG--TA-CT-AA---CTT--A------------------TC--AG-T-A-------CA---CATGAAT
gi|17 : t-T-A-------CA---CAGGAATA--AAAGAAAATTCT-------T-----------ATATTTA----TTTGA---A-A-CGTCAAGCGCC
gi|18 : gctaacGGCGCT-TGACATTTTATAT-CAA-TA--T-A-ATA--A-A-A---------A-------AAA-tg
gi|2 : GGCGCT-TGACGTTTCAAAT-AAATTA--T-ACATA--A-A-A---------A-------AAT-A---ATTCCT-GTG--TA-CT-AA---CTT--A--TTGAC--CAACTAAG-TTTCAGCT-A-------CACAGCAGGAATA--TA------TTTC-------T--TTTTAA-TTATATTTAT---TTTGA---A-AACGtg
gi|3 : acaGGCGCT-TGACGTTTCAAAT-CAA-TA--T-A-ATA--A-G-ACTTTTTTTT---------------TATTCCT-GTG--TA-CT-AATTACTT--ACCTTGT---CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--ct
gi|4 : acaggcgcttgacgtaataataagatttttttttGGCGCT-TGACGTTTCATAT-CAA-TA--T-A-ATA--A-ACA---------A-------AAA-A-ATATTCCT-GCG--TACCT-AA---CTT--A--TCC----CAA-T-AG-TT--AG-T-A-------CA---CAGGAATA--TT------TTCT-------T--TTT----TTCTA--TA----TTCGAATGA-AACGTCAAGCACCtg
gi|5 : GGCGCT-TGACGTTTCATAT-CAA-TA--TAA-ATA--A-G-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT--A---CTT--A--TTGT---CAA-TAAG--T--AG-T-A-------CA---CGGGAATAATTT------TTTT-------T--TTT--A-TTATATTGA----TATG----A-AACGTCAAGCGCtg
gi|6 : acaGGCGCT-TGACGTTTCAAAT-AAA-TA--T-A-ATT--A-A-A---------A-------AAA-ATATATTCCT-GTG--TA-CT-AA---CTT--A--TTGA---CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TA------TTTT-------T--TTT--AATTATATTTA----TTTGA---A-AACGTCAAGCGCC
gi|7 : GCTCTGACATT-CAAAT--AA-TA--T-A-ATA--A-A-A---------A-------AAT----TATTCCTTGTGGTTA-CT-AA---CTT--A--TTGACGTCAA-TAAGGTT--AG-T-A-------CA---CAGGAATA--A------------------T--TTT--A-TTATATCTA----TTTG----A-AACGTCAAGCGCC
gi|8 : gGCGCT-TGACGTTTCTTAT-CAA-TA--T-A-TTAATA-A-A---------A-------AAA-A-ATATTC----TG--TA-CTAAA---CTT--A--TTG-----AA-TAAG-TT--AG-T-A-------CA---CAGA---A--TT------TTTT-------T--TTT--A-TTATA-TAA----TATGA---C-AACGTCAAGCGCtg
gi|9 : agcGGCATT-TGACGTTTAAAAT-----TT--T-A-ATT--G-A-A---------A-------AAT----TCTTCCT-GTT--AA-CA-AA---CTT-----TTGA---CAA-TA---TT--AG-T-AGTTTGATAA---CGGGAATA---A------TTTT-------TGGTTC--A-TTAtgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACCTACTGATCAGTAAACTACAATTTCAGTTTTAATTAATTGATTCTTTGTGGAAATCATTAATTTTAAAGATTAGAC
Unaligned ( gi|19 ): CATTGTGGAAATTCAAGGCCAAAGATCAATTCACA
Alignments
lowQualScore : 11111111111111111 22222 1111111111 11111 1111 222222
lowQualScore : 2 1 88 5 33 2 2 33 222 55555555555555555 5555 2 33 2 2 444 33 33 77777 2 2 33 2 2 8888888 888 9999999999 8888888 44 11111 5 1111 222222
lowQualScore : . . .. . .. . . .. ... ................. .... . .. . . ... .. .. ..... . . .. . . ....... ... .......... ....... .. ..... . .... ......
lowQualScore : 9 0 11 0 44 5 5 22 555 11111111111111111 0000 5 44 5 5 444 44 44 22222 5 5 77 5 5 1111111 333 6666666666 1111111 22 99999 2 4444 222222
consensus : GGCGCT-TGACGTTTCANAT-CAA-TA--T-A-ATA--A-A-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT-AA---CTT--A--TTG----CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TN------TTTT-------T--TTT--A-TTATATTTA----TTTGA---A-AACGTCAAGCGCC
Reference ( family-3605 ) : GGCGCT-TGACGTTTCANAT-CAA-TA--T-A-ATA--A-A-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT-AA---CTT--A--TTG----CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TN------TTTT-------T--TTT--A-TTATATTTA----TTTGA---A-AACGTCAAGCGCC
gi|1 : GGCG-T-TGACGTTTCAAAT-CAA-TA--T-A-ATA--A-G-A---------ATTTTTTT-------TATTCCT-GTT--TT-AT-AA---CTT--A--CTGT---CAA-GAAG-TT--AG-T-A-------CA---CAGGAATA--CA----------AAAAAAAT--CTT--A-TTATATTTGATTCTTTGAT--ACAACGTCAAACGCC
gi|10 : gcGGCGCT-TGACGTTTCATAT-CAAATA--T-A-ATA--A-T-A---------A-------TAATA-AAATTCCT-GTG--TA-CT-AA---CTT--A--TT-----CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TT------TTTT-------T--TCT----------TTA----TT---------ATGTCAAGCGCC
gi|11 : caGCGCT-TGACGTTTCATAT--AA-TA--T-A-ATA--ATA-A---------T-------AAA-A-ATATTCCT-GTG--TA-CT-AA---CTT--A--TT-----C-A-TAAG-TT---G-TAA-------CAGC-CAGGAATA--TT------TTTT-------T--TCT--A--TATATt
gi|12 : GGCGCT-TTCCGT--CAAAT--AA-TA--T-G-A-A--A-G-A---------A-------AAA-A-A-ATTCCT-GTG--TA-CT-AA---CTT--A--TTG-----AA-TAAG-gtcaacgcgcctgt
gi|12 : acaTTTCTTATTCAA-TAATT-A-GTA--C-A-C---------A-------TGG-A-ATATACTT-TTT--TT-TT------CTT--A--TT-----CAA-TAAG-TT--AG-T-A-------CA---CAGGAAT---TT------TTTT-------T--CTT----TCATA-TTA----TTTG-------ACGGAAAGCGCCaaaaaaaaagtatattccatgtgtactaattattgaataagaaa
gi|13 : acaA--A-A-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT-AC---CTTAAA--TGA----CAA-TAAG-TT--AG-T-A-------C----CA-GAATAT-TC------TTTT-------T--TCT--A-AT-TATTTA----TTTG----A-AACGCCAAGCGCC
gi|14 : caGGCGCT-TGACGTTTCATAT-CAA-TA--T-A-ATA--A-G-A---------A-------AAA-A-ATAATCCT-GCG--TA-CT-AA---CTT--A--TTGT---CAA-TAAG-TT--AG-T-A-------Ctcttattc
gi|16 : acaAT-CAA-TA--T-A-ATA--A-G-A---------AGAA----AAA-A-ATATCCCT-GTG--TA-CT-AA---CTT--A------------------TC--AG-T-A-------CA---CATGAAT
gi|17 : t-T-A-------CA---CAGGAATA--AAAGAAAATTCT-------T-----------ATATTTA----TTTGA---A-A-CGTCAAGCGCC
gi|18 : gctaacGGCGCT-TGACATTTTATAT-CAA-TA--T-A-ATA--A-A-A---------A-------AAA-tg
gi|2 : GGCGCT-TGACGTTTCAAAT-AAATTA--T-ACATA--A-A-A---------A-------AAT-A---ATTCCT-GTG--TA-CT-AA---CTT--A--TTGAC--CAACTAAG-TTTCAGCT-A-------CACAGCAGGAATA--TA------TTTC-------T--TTTTAA-TTATATTTAT---TTTGA---A-AACGtg
gi|3 : acaGGCGCT-TGACGTTTCAAAT-CAA-TA--T-A-ATA--A-G-ACTTTTTTTT---------------TATTCCT-GTG--TA-CT-AATTACTT--ACCTTGT---CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--ct
gi|4 : acaggcgcttgacgtaataataagatttttttttGGCGCT-TGACGTTTCATAT-CAA-TA--T-A-ATA--A-ACA---------A-------AAA-A-ATATTCCT-GCG--TACCT-AA---CTT--A--TCC----CAA-T-AG-TT--AG-T-A-------CA---CAGGAATA--TT------TTCT-------T--TTT----TTCTA--TA----TTCGAATGA-AACGTCAAGCACCtg
gi|5 : GGCGCT-TGACGTTTCATAT-CAA-TA--TAA-ATA--A-G-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT--A---CTT--A--TTGT---CAA-TAAG--T--AG-T-A-------CA---CGGGAATAATTT------TTTT-------T--TTT--A-TTATATTGA----TATG----A-AACGTCAAGCGCtg
gi|6 : acaGGCGCT-TGACGTTTCAAAT-AAA-TA--T-A-ATT--A-A-A---------A-------AAA-ATATATTCCT-GTG--TA-CT-AA---CTT--A--TTGA---CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TA------TTTT-------T--TTT--AATTATATTTA----TTTGA---A-AACGTCAAGCGCC
gi|7 : GCTCTGACATT-CAAAT--AA-TA--T-A-ATA--A-A-A---------A-------AAT----TATTCCTTGTGGTTA-CT-AA---CTT--A--TTGACGTCAA-TAAGGTT--AG-T-A-------CA---CAGGAATA--A------------------T--TTT--A-TTATATCTA----TTTG----A-AACGTCAAGCGCC
gi|8 : gGCGCT-TGACGTTTCTTAT-CAA-TA--T-A-TTAATA-A-A---------A-------AAA-A-ATATTC----TG--TA-CTAAA---CTT--A--TTG-----AA-TAAG-TT--AG-T-A-------CA---CAGA---A--TT------TTTT-------T--TTT--A-TTATA-TAA----TATGA---C-AACGTCAAGCGCtg
gi|9 : agcGGCATT-TGACGTTTAAAAT-----TT--T-A-ATT--G-A-A---------A-------AAT----TCTTCCT-GTT--AA-CA-AA---CTT-----TTGA---CAA-TA---TT--AG-T-AGTTTGATAA---CGGGAATA---A------TTTT-------TGGTTC--A-TTAtgt
blockSeqs : C T TC A AT A C AT TA CTTTTTTTT TAA T GT C A TTA AA CC GACGT C G TC C A GTTTGAT CAG AAAGAAAA . GG TAAT T T AATGA
blockSeqs : . T C T . . . . AC AGAA ATA . . . . . . . GAC . . . . . . GC ATTT . . AAT T . AA
blockSeqs : . A C . . . . . T A AA . . . . . . . GT . . . . . . . TTC . . AA T . AA
blockSeqs : . T C . . . . . G T AA . . . . . . . GT . . . . . . . TT . . AT T . AA
blockSeqs : . T C . . . . . A A AA . . . . . . . GT . . . . . . . TT . . AT T . AC
blockSeqs : . T A . . . . . A A AA . . . . . . . GA . . . . . . . TT . . AT T . A
blockSeqs : . A C . . . . . G A AA . . . . . . . GA . . . . . . . TA . . AT T . A
blockSeqs : . A C . . . . . G A AA . . . . . . . G . . . . . . . TT . . A . . A
blockSeqs : . T C . . . . . A A AA . . . . . . . A . . . . . . . TA . . T . . .
blockSeqs : . T A . . . . . A A AA . . . . . . . C . . . . . . . TT . . T . . .
blockSeqs : . A C . . . . . G A AA . . . . . . . G . . . . . . . A . . . .
blockSeqs : . A . . . . . . G A A . . . . . . . . . . . . . . . A . . .
blockSeqs : . T . . . . . . A A . . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . A A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A A . . . . . . . . . . . . . .
blockSeqs : . A A
blockSeqCons : A**************** AA** ******* **** AA****
originalCons : GGCGCT-TGACGTTTCANAT-CAA-TA--T-A-ATA--A-A-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT-AA---CTT--A--TTG----CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TN------TTTT-------T--TTT--A-TTATATTTA----TTTGA---A-AACGTCAAGCGCC
finalCons : GGCGCT-TGACGTTTCANAT-CAA-TA--T-A-ATA--A-A-AA----------------AAAAA--TATTCCT-GTG--TA-CT-AA---CTT--A--TTG----CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TN------TTTT-------T--TTT--A-TTATATTTA----TTTGAA----AACGTCAAGCGCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACCTACTGATCAGTAAACTACAATTTCAGTTTTAATTAATTGATTCTTTGTGGAAATCATTAATTTTAAAGATTAGAC
Unaligned ( gi|19 ): CATTGTGGAAATTCAAGGCCAAAGATCAATTCACA
Alignments
lowQualScore : 11111111111111111 22222 1111111111 11111 1111 222222
lowQualScore : 2 1 88 5 33 2 2 33 222 55555555555555555 5555 2 33 2 2 444 33 33 77777 2 2 33 2 2 8888888 888 9999999999 8888888 44 11111 5 1111 222222
lowQualScore : . . .. . .. . . .. ... ................. .... . .. . . ... .. .. ..... . . .. . . ....... ... .......... ....... .. ..... . .... ......
lowQualScore : 9 0 11 0 44 5 5 22 555 11111111111111111 0000 5 44 5 5 444 44 44 22222 5 5 77 5 5 1111111 333 6666666666 1111111 22 99999 2 4444 222222
consensus : GGCGCT-TGACGTTTCANAT-CAA-TA--T-A-ATA--A-A-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT-AA---CTT--A--TTG----CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TN------TTTT-------T--TTT--A-TTATATTTA----TTTGA---A-AACGTCAAGCGCC
Reference ( family-3605 ) : GGCGCT-TGACGTTTCANAT-CAA-TA--T-A-ATA--A-A-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT-AA---CTT--A--TTG----CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TN------TTTT-------T--TTT--A-TTATATTTA----TTTGA---A-AACGTCAAGCGCC
gi|1 : GGCG-T-TGACGTTTCAAAT-CAA-TA--T-A-ATA--A-G-A---------ATTTTTTT-------TATTCCT-GTT--TT-AT-AA---CTT--A--CTGT---CAA-GAAG-TT--AG-T-A-------CA---CAGGAATA--CA----------AAAAAAAT--CTT--A-TTATATTTGATTCTTTGAT--ACAACGTCAAACGCC
gi|10 : gcGGCGCT-TGACGTTTCATAT-CAAATA--T-A-ATA--A-T-A---------A-------TAATA-AAATTCCT-GTG--TA-CT-AA---CTT--A--TT-----CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TT------TTTT-------T--TCT----------TTA----TT---------ATGTCAAGCGCC
gi|11 : caGCGCT-TGACGTTTCATAT--AA-TA--T-A-ATA--ATA-A---------T-------AAA-A-ATATTCCT-GTG--TA-CT-AA---CTT--A--TT-----C-A-TAAG-TT---G-TAA-------CAGC-CAGGAATA--TT------TTTT-------T--TCT--A--TATATt
gi|12 : GGCGCT-TTCCGT--CAAAT--AA-TA--T-G-A-A--A-G-A---------A-------AAA-A-A-ATTCCT-GTG--TA-CT-AA---CTT--A--TTG-----AA-TAAG-gtcaacgcgcctgt
gi|12 : acaTTTCTTATTCAA-TAATT-A-GTA--C-A-C---------A-------TGG-A-ATATACTT-TTT--TT-TT------CTT--A--TT-----CAA-TAAG-TT--AG-T-A-------CA---CAGGAAT---TT------TTTT-------T--CTT----TCATA-TTA----TTTG-------ACGGAAAGCGCCaaaaaaaaagtatattccatgtgtactaattattgaataagaaa
gi|13 : acaA--A-A-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT-AC---CTTAAA--TGA----CAA-TAAG-TT--AG-T-A-------C----CA-GAATAT-TC------TTTT-------T--TCT--A-AT-TATTTA----TTTG----A-AACGCCAAGCGCC
gi|14 : caGGCGCT-TGACGTTTCATAT-CAA-TA--T-A-ATA--A-G-A---------A-------AAA-A-ATAATCCT-GCG--TA-CT-AA---CTT--A--TTGT---CAA-TAAG-TT--AG-T-A-------Ctcttattc
gi|16 : acaAT-CAA-TA--T-A-ATA--A-G-A---------AGAA----AAA-A-ATATCCCT-GTG--TA-CT-AA---CTT--A------------------TC--AG-T-A-------CA---CATGAAT
gi|17 : t-T-A-------CA---CAGGAATA--AAAGAAAATTCT-------T-----------ATATTTA----TTTGA---A-A-CGTCAAGCGCC
gi|18 : gctaacGGCGCT-TGACATTTTATAT-CAA-TA--T-A-ATA--A-A-A---------A-------AAA-tg
gi|2 : GGCGCT-TGACGTTTCAAAT-AAATTA--T-ACATA--A-A-A---------A-------AAT-A---ATTCCT-GTG--TA-CT-AA---CTT--A--TTGAC--CAACTAAG-TTTCAGCT-A-------CACAGCAGGAATA--TA------TTTC-------T--TTTTAA-TTATATTTAT---TTTGA---A-AACGtg
gi|3 : acaGGCGCT-TGACGTTTCAAAT-CAA-TA--T-A-ATA--A-G-ACTTTTTTTT---------------TATTCCT-GTG--TA-CT-AATTACTT--ACCTTGT---CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--ct
gi|4 : acaggcgcttgacgtaataataagatttttttttGGCGCT-TGACGTTTCATAT-CAA-TA--T-A-ATA--A-ACA---------A-------AAA-A-ATATTCCT-GCG--TACCT-AA---CTT--A--TCC----CAA-T-AG-TT--AG-T-A-------CA---CAGGAATA--TT------TTCT-------T--TTT----TTCTA--TA----TTCGAATGA-AACGTCAAGCACCtg
gi|5 : GGCGCT-TGACGTTTCATAT-CAA-TA--TAA-ATA--A-G-A---------A-------AAA-A-ATATTCCT-GTG--TA-CT--A---CTT--A--TTGT---CAA-TAAG--T--AG-T-A-------CA---CGGGAATAATTT------TTTT-------T--TTT--A-TTATATTGA----TATG----A-AACGTCAAGCGCtg
gi|6 : acaGGCGCT-TGACGTTTCAAAT-AAA-TA--T-A-ATT--A-A-A---------A-------AAA-ATATATTCCT-GTG--TA-CT-AA---CTT--A--TTGA---CAA-TAAG-TT--AG-T-A-------CA---CAGGAATA--TA------TTTT-------T--TTT--AATTATATTTA----TTTGA---A-AACGTCAAGCGCC
gi|7 : GCTCTGACATT-CAAAT--AA-TA--T-A-ATA--A-A-A---------A-------AAT----TATTCCTTGTGGTTA-CT-AA---CTT--A--TTGACGTCAA-TAAGGTT--AG-T-A-------CA---CAGGAATA--A------------------T--TTT--A-TTATATCTA----TTTG----A-AACGTCAAGCGCC
gi|8 : gGCGCT-TGACGTTTCTTAT-CAA-TA--T-A-TTAATA-A-A---------A-------AAA-A-ATATTC----TG--TA-CTAAA---CTT--A--TTG-----AA-TAAG-TT--AG-T-A-------CA---CAGA---A--TT------TTTT-------T--TTT--A-TTATA-TAA----TATGA---C-AACGTCAAGCGCtg
gi|9 : agcGGCATT-TGACGTTTAAAAT-----TT--T-A-ATT--G-A-A---------A-------AAT----TCTTCCT-GTT--AA-CA-AA---CTT-----TTGA---CAA-TA---TT--AG-T-AGTTTGATAA---CGGGAATA---A------TTTT-------TGGTTC--A-TTAtgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACCTACTGATCAGTAAACTACAATTTCAGTTTTAATTAATTGATTCTTTGTGGAAATCATTAATTTTAAAGATTAGAC
Unaligned ( gi|19 ): CATTGTGGAAATTCAAGGCCAAAGATCAATTCACA