lowQualScore : 11111111111111111111111111111 11111111111111111111111 11111111111111111111
lowQualScore : 1 111 222 111 33333333333333333333333333333 111 1 444 00000000000000000000000 1 1111 1 1 3333 1 33 55555555555555555555 4444444 1 22222 2 444444444444444 1 11 11 88888888 11 1 111 2222 222 1 1111 1 888888888888888888888 3333333333 1111 2 33333333333 1
lowQualScore : 2 000 333 0 2 999 3 44444444444444444444444444444 222 0 88 5 6 111 0 6 33333333333333333333333 5 6 2 6666 6 9 99 6 0 0 6 8888 6 5 6 11 44444444444444444444 6 9 3333333 0 11111 1 666666666666666 0 33 11 55555555 44 0 444 3 8 5555 8 6 222 2 8 8 8 7777 8 7 888888888888888888888 8888888888 0 8 9999 6 1 1 00000000000 2 7
lowQualScore : . ... ... . . ... . ............................. ... . .. . . ... . . ....................... . . . .... . . .. . . . . .... . . . .. .................... . . ....... . ..... . ............... . .. .. ........ .. . ... . . .... . . ... . . . . .... . . ..................... .......... . . .... . . . ........... . .
lowQualScore : 8 888 000 8 5 555 2 55555555555555555555555555555 000 8 66 0 0 000 8 5 55555555555555555555555 0 8 5 2222 7 3 22 0 0 0 0 0000 0 7 0 77 33333333333333333333 7 0 3333333 0 22222 2 888888888888888 0 22 00 22222222 22 0 000 8 0 0000 0 0 000 8 0 0 0 0000 0 0 222222222222222222222 2222222222 8 0 0000 0 2 0 88888888888 5 0
consensus : AAACATTTATACAAG-ATATA--GTTATTGACA-ACGTATAAGTA-------AATGAAGTCGGTTGTAGATN--TT-C-CCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAATGTTTG----GTCATT---CATCCTGCAGNGGTCAGGCCGGGCGTA-GAATCTTTCCTGCAACACCGAAAAGTCTT--TCGACTGGATCAGA-TGTTG-CAGGTGTTGACA-AGTGCTTCCTCGCT-AAGAATTGACATGATAG-------GA-T-T--T-GGATTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATAT------TC--CT-GAAAGGTT-TAAAATATTTA--GTT-----TCCAATCAACAATAGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGAT-AATTGATAAGTA-A-AAT-GTAT----AG-AGAAACATGGTACA------GTACA-GTA-GAAGGG-AAAT----ATTTAA-GATT--TNAATTCTTCATTGAAGA----ATTTCTGTNGCATGATT
Reference ( gi|2 ) : AAACATTTATCCAAG-ATATA--GTTATTGACAAATGTATAAGTACAGTGTAAATGAAGTTGGTTGTAGTTG--TT-C-CCAATGAATACTTA-AAGAAGCTGCCCATTGAATTTTTATCATGATAAGGTTTTCAAACG---G--AAGTCATT---CAACCTTCAGTGGTCAGGCCGGGCGTA-GAATCTTTCCTGCAACACTGAACAGTCTT--TCAACTGGATCAGA-TGTTG-CAGGTGTCGTTA-AGTGCCTACCTGC--AAGAATTGACATGATAGTTATTT-GAGTCT--TCGGATTTCCACAAATGATGCT-------TTCACCAAAA-TAAAGAAGA--T-GTATGTGTGTGTGCATAT-ATAT------TA--CT-GAAAGGTT-TAAAATATTTA--GTTTGGAATCCAATCAACAACGGAATTA-GTTTATGC---AAAATA-TA----T-TTCTTGAT-ACTTGACAAGTA-A-AAT-GTAT----AG-AGAATCATG-----------GTA-------GAAGGG---AT----ATTTAA-GATT--TTAATTCTTCGTTCAAAA----ATGTTT-TGGTAAGATT
gi|3 : AAACATTTATTACAG-A-ATA--GTTATTGAAAAATGTATAAGTA-------AATGA---CAGTTGTAGATCATTT-C-CCAATGAATACTTA-AAGAATCTATCCATCA---TTTTATCATGATAAAGTTTTCAAATGTTTG----GTCATTA--CATCCTGCAGGGGT-----CGAGAGTAGGAATCTTTCCTGCAACACCAAAC-GTCTTTATCGACTGGATCAGAGTGTTGACGGTTGTTG--ACAGTGCTTCCTTGCT-TAGAGTTGACATGATAG-GATTTCGATTCTGCTTAG-TTTCCACAAATGGTGCTTAAGAAATTCACGAAAATTAAAGAAAA--TAGTATGT-TTTGTGCATATAATATGCCCGATAATCTGGAAAAATTGTAAAATATTTA--GGT-----TCCAAT-AACAA
gi|4 : AAACATTTATACAAG-ATAT----------------GTATAAGTA-------AATGAAGTCG----TAGATG--TTTC-CCAATGAATACTTA-AAGAATCTGTCCATTGCA-TTTTATCATGATAAGCTTTTCAAATGTTTG----GTCATT---CATCTTGCAGGGGTCAGGCCGGGCGTA-GAATCTTTACTGCAACACCAAAAAGTCTT--TCGACTGttagactaatt
gi|5 : tagggatggggtcaattacatgcaaaagtaattaaattacaattactttgtcaaattcttcaattaaattacaattactgcaattcacaaatgtaattaattaaattacaattactttgataaagtaattaaattacaaatgacatttagtcatttttcaaaaatttattaacAAACATTTATACAAT-ATATC--GTTATTGACA--TTTCTA-------TGTA----------GTTGTAGATG--TT-TACCAATGAGTAC-----AGAATCTGTCCATTGCATTTT-ATCATGAT
gi|1 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacACATATATACAAGTAAATAATGCTATTGACATACGTATAAGTA-------AATAAAGT-GGTT-TGATGT--TT-C-CCAATGAATACTTCTAAGAATCTGTCCATTTCA-TTTTATCATGATAAGCTTTTCAAA-G---GTTAAGTCATTCTGCATCCTGCAGCAGTCA----GGGAGTA-GAATCTTTCCGGTTACACTGGAAAGTCTT--TCGACTGGATCAGA-TGTTG-CAGGTATTGACA-AGTGCTTTCTTGC--AAGAACTGACATGATAG-------G---------GAATTT----------TGCT-------TTCACCAAAA-TAAATACGA--T-TTATGTTTGtnnnnnnnnnnnnnnnnagtaaatgaagttgtagatgtttcccaatgagtacagaatctgtccaaatgttaatatttcctgcaacactga
gi|13 : aaacactagggagggtaattacatacaaagcagtaatttaatcaaattacaattactttgctaaattcttcgattaaattacaattattgcaatttgcaaatgtaattgactaaattatagttactttgataaagtgattaattaaattacaaataatattttgtgagttttcaatattttattaacaaacatttataaaagatatattcactg-CCAATGAATACTTA-AAGAATCTGTCCAATGC-TTTTTATCATAATAAGATTTTTAA----------------T---C---CTGCAGTGGTCAGGCAGGGCGTA-TAATCTTTTCTGCAACACTGAAAAGTCTT--T
gi|6 : GGGCGTA-GAATCTTTCCTGCAGCACTGAAAAGTCTT--TCGACTTAATCAGA-TGTTG-AAGGTGTTGACA-AATGCTTCCTCGCTTAAGAATTGACATGATAG-----G-GAATAT--T--GATTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGATCT-ATATATTTGTGTGCATAT-ATAT------TC--CT-GAAAGGTT-TAAAATATTTA--GT------TCCAATCAGCAATAGAATTA-TTTCATGCAAAAAAATATTT----T-TTTTTGAT-AATTGATAAGTA-A-AAT-GTAT----AG-AGAAACATGGTACAGTACATGTA-------GAAGGG---AA----ATTTAA-
gi|16 : GGACGGA-GAACTTTGCCAGCGACACTGAATAATATT--TCGACGGGAGCAGA-CGTTG-CA
gi|5 : tAATATTTCCTGCAACACTGA
gi|7 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacaaacatttatacaatatatcgttattgacatttctatgtagttgtagatgtttaccaatgagtacagaatctgtccattgcattttatcatgattnnnnnnnnnnnnnnnnagtaaatgaagttgtagatgtttcccaatgagtacagaatctgtccaaatgttAA-TAAAGAAGA--T-TTATGTTTGTGTGCATAT-----------TC--CT-GAAAGGTT-TAAAATATTTATAGTT------CCAATCAACGATAGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGAT-CATTGA----TA-A-AAT-GTAC----AG-AGAAACATGGTACAT-----GTA-------GAAGGGAAAATAAAAATTTAA-AATT--TTAATTCTTTATTGAA
gi|8 : GTATAA-ATAT------TC--CT-GAAAGGTT----AATATTTA--GTTT------CAACCAACAATTTAATTA-GTTTAAGG---AAAACA-TA----TATTTTTGAC-AATTCATAAGTA-A-AAT-GTAT----AG-AGAAACATG-----------GTA-------GAAGGGCAAAT----AC---A-GATT--AAAATTCTTCACTGAAGATTTTATTTCT-TTGTATGATTgcatagcataccatagcatgatgtt
gi|11 : AAATATTTA--ATTC--AAT----TCAACAATAGAATTTTGTTTATGC---AAAATC-TAT---T-TTTTTAAT-A--TGATAAGTATACAAT-TTAT----AGAAGTAACATG-----------GTACATGTATGAGGGA---AT-----TTTAATGATT--CAAATCATTCATTGAAAA----GTtgtctta
gi|12 : TTATGC---AAAA-A-TACTAGT-TTTTTGATCATTTGATAAGTA-A-AATTGTATTATAAG-AGAAAAATG-----------ATACACGTAAGAAGGG---AA----ATTTAA-GACTTATTAATTCTTCATT-AAGA----ATTTTTGTGGCATGATT
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): CACATTAGGGATGGGATCAATAACATACAGAAGTACTTAATTAAATTACAATTACCTTGCCAAATTCTTCAATTAATTACAATTACAATTATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAATTACAAATTACATAT
Unaligned ( gi|10 ): TAGGGATGGGGTCAATTACATACAAAAGTAATCAATTAAATTACAATTACTTTGCCAATTTCTTCAATTAAATTACAATTACGATTACTGGAATTTACAAATGTAATTAATTCAGTTACAATTACTTAAATAAAGTAATTAATTAAACTAAAAATTACATTTTGTCATTTT
Unaligned ( gi|14 ): CTAGGTGTAGGATGGGGTCAATACATACAACGTAATTAAATAAATACAATTATTTGGCCAAATCTTCAATTAAATTACAATTACAATTACT
Unaligned ( gi|15 ): AAGAGTAGGGATGGCGTCAATTACATACAAAAGTAATTAATTGAATTGCAATGCTTTGCCAAATGTATTTAATTGAATTACAATTGA
Unaligned ( gi|17 ): ATGTAGGGATGGGGTTAATTACATACGAAAGTAATTAATTAAATTA
Alignments
lowQualScore : 111 3333 1111111 111111 111 2 1 222222 11111 11 22 88888888888888888888888888888 3333333 11 333333333 2222222 111 1111 1111 777777777777 3333333333 111 222222222222222
lowQualScore : 6 6 3 222 4444 8888888 777777 2 000 0 5 9999 5 1 44 111111 77777 1 0 00 5 1 77 8 8 3 0 2 55 55555555555555555555555555555 2 0 2222222 8 11 99 88 222222222 88 99 3 6666666 6 2 6 111 1 6 4444 6 6 6 1 6 6 6 4444 6 333333333333 1111111111 6 222 5 555555555555555 1
lowQualScore : . . . ... .... ....... ...... . ... . . .... . . .. ...... ..... . . .. . . .. . . . . . .. ............................. . . ....... . .. .. .. ......... .. .. . ....... . . . ... . . .... . . . . . . . .... . ............ .......... . ... . ............... .
lowQualScore : 7 7 5 333 7777 6666666 555555 5 222 0 7 9999 5 0 44 222222 00000 0 8 00 7 4 99 0 0 2 2 0 55 88888888888888888888888888888 5 2 5555555 0 00 00 88 000000000 88 22 2 5555555 7 2 7 777 7 7 2222 7 7 7 7 7 7 7 2222 7 333333333333 3333333333 7 000 0 222222222222222 0
consensus : AAACATTTAT-ACAAG-ATATA--GTTATTGACA-A-TGTATAAGTA-------AATGAAGTCGGTTGTAGATG--TTTC-CCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAACGTTTG--GTCATT-C---ATCCTGCAGCGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACCGAAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTTGC-TAAGAATTGACATGATAG------G--A---TTCGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTT-----TCCAAT-CAACAATNGAA-TTAGTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AG-AGAAACATGGTACA--T----GTAGAAGGG-AAAT----ATTTAA-GATTTA--AATTCTTCATTGAAGA----AT----TTCTGTGGCATGATT
Reference ( family-352 ) : AAACATTTAT-ACAAG-ATATA--GTTATTGACA-A-CGTATAAGTA-------AATGAAGTCGGTTGTAGATN--TT-C-CCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAATGTTTG--GTCATT-C---ATCCTGCAGNGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACCGAAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTCGC-TAAGAATTGACATGATAG------G--A---TTTGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTT-----TCCAAT-CAACAATAGAA-TTAGTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AG-AGAAACATGGTACA-GTACA-GTAGAAGGG-AAAT----ATTTAA-GATTTN--AATTCTTCATTGAAGA----AT----TTCTGTNGCATGATT
gi|1 : AAACATTTAT-AAAAG-ATATA--TTCACTGACATA-TATACAAGTA-------AATAA
gi|1 : aaacactagggagggtaattacatacaaagcagtaatttaatcaaattacaattactttgctaaattcttcgattaaattacaattattgcaatttgcaaatgtaattgactaaattatagttactttgataaagtgattaattaaattacaaataatattttgtgagttttcaatattttattaacACATATAT-ACAAGTAAATAATGCTATTGACATA-CGTATAAGTA-------AATAAAGT-GGTT-T-GATG--TTTC-CCAATGAATACTTCTAAGAATCTGTCCATTTCATTTT-ATCATGATAAGCTTTTCAAAGGTTAA--GTCATT-CTGCATCCTGCAGCAGTCAGG----GAGTAG-AATCTTTCCGGTTACACTGGAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTATTGACAAGTGCTTTCTTGC--AAGAACTGACATGATAG------G---------GAA----------TTT----------TGCT-------TTCACCAAAA-TAAATACGA--T-TTATGTTTGtgctattgacatacgtataagtaaataaagtggtttgatgtttcccaatgaatacttctaagaatctgtccatttcattttatcatgataagcttttcaaaggttaagtcattctgcatcctgcagcagtcagggagtagaatctttccggttacactggaaagtctttcgactggatcagatgttgcaggtattgacaagtgctttcttgcaagaactgacatgatagggaattttgctttcaccaaaataaatacgatttatgtttg
gi|11 : aaacactagggagggtaattacatacaaagcagtaatttaatcaaattacaattactttgctaaattcttcgattaaattacaattattgcaatttgcaaatgtaattgactaaattatagttactttgataaagtgattaattaaattacaaataatattttgtgagttttcaatattttattaacaaacatttataaaagatatattcactgAAATATTTA--ATT-------CAATTCAACAATAGAATTTTGTTTATGC---AAAATC-TA----T-TTTTT--TAATAT-GATAAGTATACAAT-TTAT----AGAAGTAACATGGTACA--T----GTATGAGGG--AAT-----TTTAATGATTCA--AATCATTCATTGAAAA----GT----
gi|12 : TTATGC---AAAA-A-TACTAGT-TTTTTGATCAT-TTGATAAGTA-A-AATTGTATTATAAG-AGAAAAATGATACACGTA-----AGAAGGG-AAAT------TTAA-GACTTATTAATTCTTCATT-AAGA----AT----TTTTGTGGCATGATT
gi|13 : tggta-CCAATGAATACTTA-AAGAATCTGTCCAATGC-TTTTTATCATAATAAGATTTTTAA---------------------TCCTGCAGTGGTCAGGCAGGGCGTAT-AATCTTTTCTGCAACACTGAAAAGTCTTT--tt
gi|16 : GGACGGAG-AACTTTGCCAGCGACACTGAATAATATTT--CGACGGGAGCAGA-CGTTG-CA
gi|2 : tAAACATTTAT-CCAAG-ATATA--GTTATTGACA-AATGTATAAGTACAGTGTAAATGAAGTTGGTTGTAGTTG--TT-C-CCAATGAATACTTA-AAGAAGCTGCCCATTGAATTTTTATCATGATAAGGTTTTCAAACG---GAAGTCATT-C---AACCTTCAGTGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACTGAACAGTCTTT--CAACTGGATCAGA-TGTTG-CAGGTGTCGTTAAGTGCCTACCTGC--AAGAATTGACATGATAGTTATTTG--AGTCTTCGGA----------TTTCCACAAATGATGCT-------TTCACCAAAA-TAAAGAAGA--T-GTATGTGTGTGTGCATAT-ATATTACT---------GAAAGGTT-TAAAATATTTA--GTTTGGAATCCAAT-CAACAACGGAA-TTAGTTTATGC---AAAATA-TA----T-TTCTTGATACT-T-GACAAGTA-A-AAT-GTAT----AG-AGAATCATG------------GTAGAAGGG---AT----ATTTAA-GATTTT--AATTCTTCGTTCAAAA----AT----GTTT-TGGTAAGATT
gi|3 : AAACATTTATTACA-G-A-ATA--GTTATTGAAA-AATGTATAAGTA-------AATGA---CAGTTGTAGATCATTT-C-CCAATGAATACTTA-AAGAATCTATCCAT--CATTTT-ATCATGATAAAGTTTTCAAATGTTTG--GTCATTAC---ATCCTGCAGGGGTC-----GAGAGTAGGAATCTTTCCTGCAACACC-AAACGTCTTTATCGACTGGATCAGAGTGTTGACGGTTGTTGACA-GTGCTTCCTTGC-TTAGAGTTGACATGATAG------G--A---TTTCGATTCTGCTTAGTTTCCACAAATGGTGCTTAAGAAATTCACGAAAATTAAAGAAAA--TAGTATGTTT-TGTGCATATAATATGCCCGATAATCTGGAAAAATTGTAAAATATTTA--GGT-----TCCAAT--AACAATTAGA-CTAATT
gi|4 : AAACATTTAT-ACAAG-ATAT-----------------GTATAAGTA-------AATGAAGTCG----TAGATG--TTTC-CCAATGAATACTTA-AAGAATCTGTCCATTGCATTTT-ATCATGATAAGCTTTTCAAATGTTTG--GTCATT-C---ATCTTGCAGGGGTCAGGCCGGGCGTAG-AATCTTTACTGCAACACCAAAAAGTCTTT--CGACTG
gi|5 : tagggatggggtcaattacatgcaaaagtaattaaattacaattactttgtcaaattcttcaattaaattacaattactgcaattcacaaatgtaattaattaaattacaattactttgataaagtaattaaattacaaatgacatttagtcatttttcaaaaatttattaacAAACATTTAT-ACAAT-ATATC--GTTATTGACA---TTTCTATGTA-----------------GTTGTAGATG--TT-TACCAATGAGTAC-----AGAATCTGTCCATTGCA-TTTTATCATGAT
gi|5 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacAGTA-------AATGAAGT----TGTAGATG--TTTC-CCAATGAGTAC-----AGAATCTGTCCAtnnnnnnnnnnnnnnnnagtaaatgaagttgtagatgtttcccaatgagtacagaatctgtccaaatgttaatatttcctgcaacactga
gi|6 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacaaacatttatacaatatatcgttattgacatttctatgtagttgtagatgtttaccaatgagtacagaatctgtccattgcattttatcatgattnnnnnnnnnnnnnnnnGGGCGTAG-AATCTTTCCTGCAGCACTGAAAAGTCTTT--CGACTTAATCAGA-TGTTG-AAGGTGTTGACAAATGCTTCCTCGCTTAAGAATTGACATGATAG------GGAA---TATTGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGATCT-ATATATTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--G-T-----TCCAAT-CAGCAATAGAA-TTATTTCATGCAAAAAAATATTT----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AG-AGAAACATGGTACA-GTACATGTAGAAGGG-AA------ATTTAA-aatgttaatatttcctgcaacactga
gi|7 : AA-TAAAGAAGA--T-TTATGTTTGTGTGCATAT-----TCCT---------GAAAGGTT-TAAAATATTTATAGTT------CCAAT-CAACGATAGAA-TTAGTTTATGC---AAAATA-TA----T-TTTTTGATCAT-T-GA----TA-A-AAT-GTAC----AG-AGAAACATGGTACA--T----GTAGAAGGGAAAATAAAAATTTAA-AATTTT--AATTCTTTATTGAAGC----ATAGCATACCATAGCATGAT
gi|8 : GTATAA-ATATTCCT---------GAAAGGTT----AATATTTA--GTT-----T-CAAC-CAACAATTTAA-TTAGTTTAAGG---AAAACA-TA----TATTTTTGACAAT-T-CATAAGTA-A-AAT-GTAT----AG-AGAAACATG------------GTAGAAGGGCAAAT----AC---A-GATTAA--AATTCTTCACTGAAGATTTTAT----TTCT-TTGTATGATTgtt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CACATTAGGGATGGGATCAATAACATACAGAAGTACTTAATTAAATTACAATTACCTTGCCAAATTCTTCAATTAATTACAATTACAATTATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAATTACAAATTACATAT
Unaligned ( gi|10 ): TAGGGATGGGGTCAATTACATACAAAAGTAATCAATTAAATTACAATTACTTTGCCAATTTCTTCAATTAAATTACAATTACGATTACTGGAATTTACAAATGTAATTAATTCAGTTACAATTACTTAAATAAAGTAATTAATTAAACTAAAAATTACATTTTGTCATTTT
Unaligned ( gi|14 ): CTAGGTGTAGGATGGGGTCAATACATACAACGTAATTAAATAAATACAATTATTTGGCCAAATCTTCAATTAAATTACAATTACAATTACT
Unaligned ( gi|15 ): AAGAGTAGGGATGGCGTCAATTACATACAAAAGTAATTAATTGAATTGCAATGCTTTGCCAAATGTATTTAATTGAATTACAATTGA
Unaligned ( gi|17 ): ATGTAGGGATGGGGTTAATTACATACGAAAGTAATTAATTAAATTA
Alignments
lowQualScore : 111 222 2222222 111111 1 222222222 11111 11 22 9999999999999999999999999999999 3333333 11 333333333 2222222 111 1111 1111 222222 3333333333 111 222222222222222
lowQualScore : 6 6 3 222 888 1111111 777777 2 6 9999 5 1 333333333 77777 6 0 00 5 1 77 8 8 3 0 55 8888888888888888888888888888888 2 0 2222222 8 11 99 88 222222222 88 99 3 6666666 6 1 6 111 1 6 4444 6 6 6 1 6 6 6 4444 6 666666 1 6 1111111111 6 222 5 555555555555555 0
lowQualScore : . . . ... ... ....... ...... . . .... . . ......... ..... . . .. . . .. . . . . .. ............................... . . ....... . .. .. .. ......... .. .. . ....... . . . ... . . .... . . . . . . . .... . ...... . . .......... . ... . ............... .
lowQualScore : 7 7 5 333 333 7777777 555555 5 7 9999 5 0 444444444 00000 4 8 00 7 4 99 0 0 2 2 55 8888888888888888888888888888888 5 2 5555555 0 00 00 88 000000000 88 22 2 5555555 7 0 7 777 7 7 2222 7 7 7 7 7 7 7 2222 7 000000 5 7 3333333333 7 444 0 222222222222222 2
consensus : AAACATTTAT-ACAAG-ATATA--GTTATTGACA-AATGTATAAGTA-------AATGAAGTCGGTTGTAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAACGTTTG--GTCATT-C---ATCCTGCAGCGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACCGAAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTTGC-TAAGAATTGACATGATAG------G----A---TTCGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTT-----TCCAAT-CAACAATNGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----GTACATGTA-GAAGGG-AAAT----ATTTAA-GATTTA--AATTCTTCATTGAAGA----AT----TTCTGTGGCATGATT
Reference ( family-352 ) : AAACATTTAT-ACAAG-ATATA--GTTATTGACA-A-TGTATAAGTA-------AATGAAGTCGGTTGTAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAACGTTTG--GTCATT-C---ATCCTGCAGCGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACCGAAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTTGC-TAAGAATTGACATGATAG------G----A---TTCGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTT-----TCCAAT-CAACAATNGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----GTACATGTA-GAAGGG-AAAT----ATTTAA-GATTTA--AATTCTTCATTGAAGA----AT----TTCTGTGGCATGATT
gi|1 : AAACATTTAT-AAAAG-ATATA--TTCACTGACA-
gi|1 : aaacactagggagggtaattacatacaaagcagtaatttaatcaaattacaattactttgctaaattcttcgattaaattacaattattgcaatttgcaaatgtaattgactaaattatagttactttgataaagtgattaattaaattacaaataatattttgtgagttttcaatattttattaacACATATAT-ACAAGTAAATAATGCTATTGACATA-CGTATAAGTA-------AATAAAGT-GGTT-T-GAT-GTTTCCCAATGAATACTTCTAAGAATCTGTCCATTTCATTTT-ATCATGATAAGCTTTTCAAAGGTTAA--GTCATT-CTGCATCCTGCAGCAGTCAGG----GAGTAG-AATCTTTCCGGTTACACTGGAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTATTGACAAGTGCTTTCTTGC--AAGAACTGACATGATAG------G-----------GAA----------TTT----------TGCT-------TTCACCAAAA-TAAATACGA--T-TTATGTTTGtatatacaagtaaataatgctattgacatacgtataagtaaataaagtggtttgatgtttcccaatgaatacttctaagaatctgtccatttcattttatcatgataagcttttcaaaggttaagtcattctgcatcctgcagcagtcagggagtagaatctttccggttacactggaaagtctttcgactggatcagatgttgcaggtattgacaagtgctttcttgcaagaactgacatgatagggaattttgctttcaccaaaataaatacgatttatgtttg
gi|11 : aaacactagggagggtaattacatacaaagcagtaatttaatcaaattacaattactttgctaaattcttcgattaaattacaattattgcaatttgcaaatgtaattgactaaattatagttactttgataaagtgattaattaaattacaaataatattttgtgagttttcaatattttattaacaaacatttataaaagatatattcactgAAATATTTA--ATT-------CAATTCAACAATAGAATTTTGTTTATGC---AAAATC-TA----T-TTTTT--TAATAT-GATAAGTATACAAT-TTAT----AGAAGTAACATG-----GTACATGTA-TGAGGG--AAT-----TTTAATGATTCA--AATCATTCATTGAAAA----GT----
gi|12 : TTATGC---AAAA-A-TACTAGT-TTTTTGATCAT-TTGATAAGTA-A-AATTGTATTATAAGA-GAAAAATG-----ATACACGTAAGAAGGG-AAAT------TTAA-GACTTATTAATTCTTCATT-AAGA----AT----TTTTGTGGCATGATT
gi|13 : tggtaCCAATGAATACTTA-AAGAATCTGTCCAATGC-TTTTTATCATAATAAGATTTTTAA---------------------TCCTGCAGTGGTCAGGCAGGGCGTAT-AATCTTTTCTGCAACACTGAAAAGTCTTT--tt
gi|16 : GGACGGAG-AACTTTGCCAGCGACACTGAATAATATTT--CGACGGGAGCAGA-CGTTG-CA
gi|2 : tAAACATTTAT-CCAAG-ATATA--GTTATTGACA-AATGTATAAGTACAGTGTAAATGAAGTTGGTTGTAGTT-GTT-CCCAATGAATACTTA-AAGAAGCTGCCCATTGAATTTTTATCATGATAAGGTTTTCAAACG---GAAGTCATT-C---AACCTTCAGTGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACTGAACAGTCTTT--CAACTGGATCAGA-TGTTG-CAGGTGTCGTTAAGTGCCTACCTGC--AAGAATTGACATGATAGTTATTTG----AGTCTTCGGA----------TTTCCACAAATGATGCT-------TTCACCAAAA-TAAAGAAGA--T-GTATGTGTGTGTGCATAT-ATATTACT---------GAAAGGTT-TAAAATATTTA--GTTTGGAATCCAAT-CAACAACGGAATTA-GTTTATGC---AAAATA-TA----T-TTCTTGATACT-T-GACAAGTA-A-AAT-GTAT----AGA-GAATCATG-----------GTA-GAAGGG---AT----ATTTAA-GATTTT--AATTCTTCGTTCAAAA----AT----GTTT-TGGTAAGATT
gi|3 : AAACATTTATTACA-G-A-ATA--GTTATTGAAA-AATGTATAAGTA-------AATGA---CAGTTGTAGATCATTTCCCAATGAATACTTA-AAGAATCTATCCAT--CATTTT-ATCATGATAAAGTTTTCAAATGTTTG--GTCATTAC---ATCCTGCAGGGGTC-----GAGAGTAGGAATCTTTCCTGCAACACC-AAACGTCTTTATCGACTGGATCAGAGTGTTGACGGTTGTTGACA-GTGCTTCCTTGC-TTAGAGTTGACATGATAG------G----A---TTTCGATTCTGCTTAGTTTCCACAAATGGTGCTTAAGAAATTCACGAAAATTAAAGAAAA--TAGTATGTTT-TGTGCATATAATATGCCCGATAATCTGGAAAAATTGTAAAATATTTA--GGT-----TCCAAT--AACAATTAGACTA-ATT
gi|4 : AAACATTTAT-ACAAG-ATAT-----------------GTATAAGTA-------AATGAAGTCG----TAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTT-ATCATGATAAGCTTTTCAAATGTTTG--GTCATT-C---ATCTTGCAGGGGTCAGGCCGGGCGTAG-AATCTTTACTGCAACACCAAAAAGTCTTT--CGACTG
gi|5 : tagggatggggtcaattacatgcaaaagtaattaaattacaattactttgtcaaattcttcaattaaattacaattactgcaattcacaaatgtaattaattaaattacaattactttgataaagtaattaaattacaaatgacatttagtcatttttcaaaaatttattaacAAACATTTAT-ACAAT-ATATC--GTTATTGACA---TTTCTATGTA-----------------GTTGTAGAT-GTTTACCAATGAGTAC-----AGAATCTGTCCATTGCA-TTTTATCATGAT
gi|5 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacAGTA-------AATGAAGT----TGTAGAT-GTTTCCCAATGAGTAC-----AGAATCTGTCCAtnnnnnnnnnnnnnnnnagtaaatgaagttgtagatgtttcccaatgagtacagaatctgtccaaatgttaatatttcctgcaacactga
gi|6 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacaaacatttatacaatatatcgttattgacatttctatgtagttgtagatgtttaccaatgagtacagaatctgtccattgcattttatcatgattnnnnnnnnnnnnnnnnGGGCGTAG-AATCTTTCCTGCAGCACTGAAAAGTCTTT--CGACTTAATCAGA-TGTTG-AAGGTGTTGACAAATGCTTCCTCGCTTAAGAATTGACATGATAG------GGAATA---TT--GA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGATCT-ATATATTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--G-T-----TCCAAT-CAGCAATAGAATTA-TTTCATGCAAAAAAATATTT----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATGGTACAGTACATGTA-GAAGGG-AA------ATTTAA-aatgttaatatttcctgcaacactga
gi|7 : AA-TAAAGAAGA--T-TTATGTTTGTGTGCATAT-----TCCT---------GAAAGGTT-TAAAATATTTATAGTT------CCAAT-CAACGATAGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATCAT-T-GA----TA-A-AAT-GTAC----AGA-GAAACATG-----GTACATGTA-GAAGGGAAAATAAAAATTTAA-AATTTT--AATTCTTTATTGAAGC----ATAGCATACCATAGCATGAT
gi|8 : GTATAA-ATATTCCT---------GAAAGGTT----AATATTTA--GTT-----T-CAAC-CAACAATTTAATTA-GTTTAAGG---AAAACA-TA----TATTTTTGACAAT-T-CATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----------GTA-GAAGGGCAAAT----AC---A-GATTAA--AATTCTTCACTGAAGATTTTAT----TTCT-TTGTATGATTgtt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CACATTAGGGATGGGATCAATAACATACAGAAGTACTTAATTAAATTACAATTACCTTGCCAAATTCTTCAATTAATTACAATTACAATTATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAATTACAAATTACATAT
Unaligned ( gi|10 ): TAGGGATGGGGTCAATTACATACAAAAGTAATCAATTAAATTACAATTACTTTGCCAATTTCTTCAATTAAATTACAATTACGATTACTGGAATTTACAAATGTAATTAATTCAGTTACAATTACTTAAATAAAGTAATTAATTAAACTAAAAATTACATTTTGTCATTTT
Unaligned ( gi|14 ): CTAGGTGTAGGATGGGGTCAATACATACAACGTAATTAAATAAATACAATTATTTGGCCAAATCTTCAATTAAATTACAATTACAATTACT
Unaligned ( gi|15 ): AAGAGTAGGGATGGCGTCAATTACATACAAAAGTAATTAATTGAATTGCAATGCTTTGCCAAATGTATTTAATTGAATTACAATTGA
Unaligned ( gi|17 ): ATGTAGGGATGGGGTTAATTACATACGAAAGTAATTAATTAAATTA
Alignments
lowQualScore : 1111 2222222 111111 1 222222222 11111 11 22 9999999999999999999999999999999 3333333 11 333333333 2222222 111 1111 1111 222222 3333333333 111 222222222222222
lowQualScore : 77 1 5 1 3333 99 1111111 777777 2 6 9999 5 1 333333333 77777 6 0 00 5 1 77 8 8 3 0 55 8888888888888888888888888888888 2 0 2222222 8 11 99 88 222222222 88 99 3 6666666 6 1 6 111 1 6 4444 6 6 6 1 6 6 6 4444 6 666666 1 6 1111111111 6 222 5 555555555555555 0
lowQualScore : .. . . . .... .. ....... ...... . . .... . . ......... ..... . . .. . . .. . . . . .. ............................... . . ....... . .. .. .. ......... .. .. . ....... . . . ... . . .... . . . . . . . .... . ...... . . .......... . ... . ............... .
lowQualScore : 11 7 7 7 4444 88 7777777 555555 5 7 9999 5 0 444444444 00000 4 8 00 7 4 99 0 0 2 2 55 8888888888888888888888888888888 5 2 5555555 0 00 00 88 000000000 88 22 2 5555555 7 0 7 777 7 7 2222 7 7 7 7 7 7 7 2222 7 000000 5 7 3333333333 7 444 0 222222222222222 2
consensus : AAACATTTAT-ACAAG-ATATA--GTTATTGACAAATGTATAAGTA-------AATGAAGTCGGTTGTAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAACGTTTG--GTCATT-C---ATCCTGCAGCGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACCGAAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTTGC-TAAGAATTGACATGATAG------G----A---TTCGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTT-----TCCAAT-CAACAATNGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----GTACATGTA-GAAGGG-AAAT----ATTTAA-GATTTA--AATTCTTCATTGAAGA----AT----TTCTGTGGCATGATT
Reference ( family-352 ) : AAACATTTAT-ACAAG-ATATA--GTTATTGACAAATGTATAAGTA-------AATGAAGTCGGTTGTAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAACGTTTG--GTCATT-C---ATCCTGCAGCGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACCGAAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTTGC-TAAGAATTGACATGATAG------G----A---TTCGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTT-----TCCAAT-CAACAATNGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----GTACATGTA-GAAGGG-AAAT----ATTTAA-GATTTA--AATTCTTCATTGAAGA----AT----TTCTGTGGCATGATT
gi|1 : AAACATTTAT-AAAAG-ATATA--TTCACTGACA
gi|1 : aaacactagggagggtaattacatacaaagcagtaatttaatcaaattacaattactttgctaaattcttcgattaaattacaattattgcaatttgcaaatgtaattgactaaattatagttactttgataaagtgattaattaaattacaaataatattttgtgagttttcaatattttattaacACATATAT-ACAAGTAAATAATGCTATTGACATACGTATAAGTA-------AATAAAGT-GGTT-T-GAT-GTTTCCCAATGAATACTTCTAAGAATCTGTCCATTTCATTTT-ATCATGATAAGCTTTTCAAAGGTTAA--GTCATT-CTGCATCCTGCAGCAGTCAGG----GAGTAG-AATCTTTCCGGTTACACTGGAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTATTGACAAGTGCTTTCTTGC--AAGAACTGACATGATAG------G-----------GAA----------TTT----------TGCT-------TTCACCAAAA-TAAATACGA--T-TTATGTTTGtatatacaagtaaataatgctattgacatacgtataagtaaataaagtggtttgatgtttcccaatgaatacttctaagaatctgtccatttcattttatcatgataagcttttcaaaggttaagtcattctgcatcctgcagcagtcagggagtagaatctttccggttacactggaaagtctttcgactggatcagatgttgcaggtattgacaagtgctttcttgcaagaactgacatgatagggaattttgctttcaccaaaataaatacgatttatgtttg
gi|11 : aaacactagggagggtaattacatacaaagcagtaatttaatcaaattacaattactttgctaaattcttcgattaaattacaattattgcaatttgcaaatgtaattgactaaattatagttactttgataaagtgattaattaaattacaaataatattttgtgagttttcaatattttattaacaaacatttataaaagatatattcactgAAATATTTA--ATT-------CAATTCAACAATAGAATTTTGTTTATGC---AAAATC-TA----T-TTTTT--TAATAT-GATAAGTATACAAT-TTAT----AGAAGTAACATG-----GTACATGTA-TGAGGG--AAT-----TTTAATGATTCA--AATCATTCATTGAAAA----GT----
gi|12 : TTATGC---AAAA-A-TACTAGT-TTTTTGATCAT-TTGATAAGTA-A-AATTGTATTATAAGA-GAAAAATG-----ATACACGTAAGAAGGG-AAAT------TTAA-GACTTATTAATTCTTCATT-AAGA----AT----TTTTGTGGCATGATT
gi|13 : tggtaCCAATGAATACTTA-AAGAATCTGTCCAATGC-TTTTTATCATAATAAGATTTTTAA---------------------TCCTGCAGTGGTCAGGCAGGGCGTAT-AATCTTTTCTGCAACACTGAAAAGTCTTT--tt
gi|16 : GGACGGAG-AACTTTGCCAGCGACACTGAATAATATTT--CGACGGGAGCAGA-CGTTG-CA
gi|2 : tAAACATTTAT-CCAAG-ATATA--GTTATTGACAAATGTATAAGTACAGTGTAAATGAAGTTGGTTGTAGTT-GTT-CCCAATGAATACTTA-AAGAAGCTGCCCATTGAATTTTTATCATGATAAGGTTTTCAAACG---GAAGTCATT-C---AACCTTCAGTGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACTGAACAGTCTTT--CAACTGGATCAGA-TGTTG-CAGGTGTCGTTAAGTGCCTACCTGC--AAGAATTGACATGATAGTTATTTG----AGTCTTCGGA----------TTTCCACAAATGATGCT-------TTCACCAAAA-TAAAGAAGA--T-GTATGTGTGTGTGCATAT-ATATTACT---------GAAAGGTT-TAAAATATTTA--GTTTGGAATCCAAT-CAACAACGGAATTA-GTTTATGC---AAAATA-TA----T-TTCTTGATACT-T-GACAAGTA-A-AAT-GTAT----AGA-GAATCATG-----------GTA-GAAGGG---AT----ATTTAA-GATTTT--AATTCTTCGTTCAAAA----AT----GTTT-TGGTAAGATT
gi|3 : AAACATTTATTACA-G-A-ATA--GTTATTGAAAAATGTATAAGTA-------AATGA---CAGTTGTAGATCATTTCCCAATGAATACTTA-AAGAATCTATCCAT--CATTTT-ATCATGATAAAGTTTTCAAATGTTTG--GTCATTAC---ATCCTGCAGGGGTC-----GAGAGTAGGAATCTTTCCTGCAACACC-AAACGTCTTTATCGACTGGATCAGAGTGTTGACGGTTGTTGACA-GTGCTTCCTTGC-TTAGAGTTGACATGATAG------G----A---TTTCGATTCTGCTTAGTTTCCACAAATGGTGCTTAAGAAATTCACGAAAATTAAAGAAAA--TAGTATGTTT-TGTGCATATAATATGCCCGATAATCTGGAAAAATTGTAAAATATTTA--GGT-----TCCAAT--AACAATTAGACTA-ATT
gi|4 : AAACATTTAT-ACAAG-ATAT----------------GTATAAGTA-------AATGAAGTCG----TAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTT-ATCATGATAAGCTTTTCAAATGTTTG--GTCATT-C---ATCTTGCAGGGGTCAGGCCGGGCGTAG-AATCTTTACTGCAACACCAAAAAGTCTTT--CGACTG
gi|5 : tagggatggggtcaattacatgcaaaagtaattaaattacaattactttgtcaaattcttcaattaaattacaattactgcaattcacaaatgtaattaattaaattacaattactttgataaagtaattaaattacaaatgacatttagtcatttttcaaaaatttattaacAAACATTTAT-ACAAT-ATATC--GTTATTGACA--TTTCTATGTA-----------------GTTGTAGAT-GTTTACCAATGAGTAC-----AGAATCTGTCCATTGCA-TTTTATCATGAT
gi|5 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacTTTAT--CATG-AT------TNNNNNNNNNNNNNNNNAGTA-------AATGAAGT----TGTAGAT-GTTTCCCAATGAGTAC-----AGAATCTGTCCAtnnnnnnnnnnnnnnnnagtaaatgaagttgtagatgtttcccaatgagtacagaatctgtccaaatgttaatatttcctgcaacactga
gi|6 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacaaacatttatacaatatatcgttattgacatttctatgtagttgtagatgtttaccaatgagtacagaatctgtccattgcatGGGCGTAG-AATCTTTCCTGCAGCACTGAAAAGTCTTT--CGACTTAATCAGA-TGTTG-AAGGTGTTGACAAATGCTTCCTCGCTTAAGAATTGACATGATAG------GGAATA---TT--GA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGATCT-ATATATTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--G-T-----TCCAAT-CAGCAATAGAATTA-TTTCATGCAAAAAAATATTT----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATGGTACAGTACATGTA-GAAGGG-AA------ATTTAA-aatgttaatatttcctgcaacactga
gi|7 : AA-TAAAGAAGA--T-TTATGTTTGTGTGCATAT-----TCCT---------GAAAGGTT-TAAAATATTTATAGTT------CCAAT-CAACGATAGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATCAT-T-GA----TA-A-AAT-GTAC----AGA-GAAACATG-----GTACATGTA-GAAGGGAAAATAAAAATTTAA-AATTTT--AATTCTTTATTGAAGC----ATAGCATACCATAGCATGAT
gi|8 : GTATAA-ATATTCCT---------GAAAGGTT----AATATTTA--GTT-----T-CAAC-CAACAATTTAATTA-GTTTAAGG---AAAACA-TA----TATTTTTGACAAT-T-CATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----------GTA-GAAGGGCAAAT----AC---A-GATTAA--AATTCTTCACTGAAGATTTTAT----TTCT-TTGTATGATTgtt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CACATTAGGGATGGGATCAATAACATACAGAAGTACTTAATTAAATTACAATTACCTTGCCAAATTCTTCAATTAATTACAATTACAATTATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAATTACAAATTACATAT
Unaligned ( gi|10 ): TAGGGATGGGGTCAATTACATACAAAAGTAATCAATTAAATTACAATTACTTTGCCAATTTCTTCAATTAAATTACAATTACGATTACTGGAATTTACAAATGTAATTAATTCAGTTACAATTACTTAAATAAAGTAATTAATTAAACTAAAAATTACATTTTGTCATTTT
Unaligned ( gi|14 ): CTAGGTGTAGGATGGGGTCAATACATACAACGTAATTAAATAAATACAATTATTTGGCCAAATCTTCAATTAAATTACAATTACAATTACT
Unaligned ( gi|15 ): AAGAGTAGGGATGGCGTCAATTACATACAAAAGTAATTAATTGAATTGCAATGCTTTGCCAAATGTATTTAATTGAATTACAATTGA
Unaligned ( gi|17 ): ATGTAGGGATGGGGTTAATTACATACGAAAGTAATTAATTAAATTA
Alignments
lowQualScore : 1111 2222222 111111 1 222222222 11111 11 22 9999999999999999999999999999999 3333333 11 333333333 2222222 111 1111 1111 222222 3333333333 111 222222222222222
lowQualScore : 77 1 5 1 3333 99 1111111 777777 2 6 9999 5 1 333333333 77777 6 0 00 5 1 77 8 8 3 0 55 8888888888888888888888888888888 2 0 2222222 8 11 99 88 222222222 88 99 3 6666666 6 1 6 111 1 6 4444 6 6 6 1 6 6 6 4444 6 666666 1 6 1111111111 6 222 5 555555555555555 0
lowQualScore : .. . . . .... .. ....... ...... . . .... . . ......... ..... . . .. . . .. . . . . .. ............................... . . ....... . .. .. .. ......... .. .. . ....... . . . ... . . .... . . . . . . . .... . ...... . . .......... . ... . ............... .
lowQualScore : 11 7 7 7 4444 88 7777777 555555 5 7 9999 5 0 444444444 00000 4 8 00 7 4 99 0 0 2 2 55 8888888888888888888888888888888 5 2 5555555 0 00 00 88 000000000 88 22 2 5555555 7 0 7 777 7 7 2222 7 7 7 7 7 7 7 2222 7 000000 5 7 3333333333 7 444 0 222222222222222 2
consensus : AAACATTTAT-ACAAG-ATATA--GTTATTGACAAATGTATAAGTA-------AATGAAGTCGGTTGTAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAACGTTTG--GTCATT-C---ATCCTGCAGCGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACCGAAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTTGC-TAAGAATTGACATGATAG------G----A---TTCGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTT-----TCCAAT-CAACAATNGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----GTACATGTA-GAAGGG-AAAT----ATTTAA-GATTTA--AATTCTTCATTGAAGA----AT----TTCTGTGGCATGATT
Reference ( family-352 ) : AAACATTTAT-ACAAG-ATATA--GTTATTGACAAATGTATAAGTA-------AATGAAGTCGGTTGTAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAACGTTTG--GTCATT-C---ATCCTGCAGCGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACCGAAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTTGC-TAAGAATTGACATGATAG------G----A---TTCGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTT-----TCCAAT-CAACAATNGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----GTACATGTA-GAAGGG-AAAT----ATTTAA-GATTTA--AATTCTTCATTGAAGA----AT----TTCTGTGGCATGATT
gi|1 : AAACATTTAT-AAAAG-ATATA--TTCACTGACA
gi|1 : aaacactagggagggtaattacatacaaagcagtaatttaatcaaattacaattactttgctaaattcttcgattaaattacaattattgcaatttgcaaatgtaattgactaaattatagttactttgataaagtgattaattaaattacaaataatattttgtgagttttcaatattttattaacACATATAT-ACAAGTAAATAATGCTATTGACATACGTATAAGTA-------AATAAAGT-GGTT-T-GAT-GTTTCCCAATGAATACTTCTAAGAATCTGTCCATTTCATTTT-ATCATGATAAGCTTTTCAAAGGTTAA--GTCATT-CTGCATCCTGCAGCAGTCAGG----GAGTAG-AATCTTTCCGGTTACACTGGAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTATTGACAAGTGCTTTCTTGC--AAGAACTGACATGATAG------G-----------GAA----------TTT----------TGCT-------TTCACCAAAA-TAAATACGA--T-TTATGTTTGtatatacaagtaaataatgctattgacatacgtataagtaaataaagtggtttgatgtttcccaatgaatacttctaagaatctgtccatttcattttatcatgataagcttttcaaaggttaagtcattctgcatcctgcagcagtcagggagtagaatctttccggttacactggaaagtctttcgactggatcagatgttgcaggtattgacaagtgctttcttgcaagaactgacatgatagggaattttgctttcaccaaaataaatacgatttatgtttg
gi|11 : aaacactagggagggtaattacatacaaagcagtaatttaatcaaattacaattactttgctaaattcttcgattaaattacaattattgcaatttgcaaatgtaattgactaaattatagttactttgataaagtgattaattaaattacaaataatattttgtgagttttcaatattttattaacaaacatttataaaagatatattcactgAAATATTTA--ATT-------CAATTCAACAATAGAATTTTGTTTATGC---AAAATC-TA----T-TTTTT--TAATAT-GATAAGTATACAAT-TTAT----AGAAGTAACATG-----GTACATGTA-TGAGGG--AAT-----TTTAATGATTCA--AATCATTCATTGAAAA----GT----
gi|12 : TTATGC---AAAA-A-TACTAGT-TTTTTGATCAT-TTGATAAGTA-A-AATTGTATTATAAGA-GAAAAATG-----ATACACGTAAGAAGGG-AAAT------TTAA-GACTTATTAATTCTTCATT-AAGA----AT----TTTTGTGGCATGATT
gi|13 : tggtaCCAATGAATACTTA-AAGAATCTGTCCAATGC-TTTTTATCATAATAAGATTTTTAA---------------------TCCTGCAGTGGTCAGGCAGGGCGTAT-AATCTTTTCTGCAACACTGAAAAGTCTTT--tt
gi|16 : GGACGGAG-AACTTTGCCAGCGACACTGAATAATATTT--CGACGGGAGCAGA-CGTTG-CA
gi|2 : tAAACATTTAT-CCAAG-ATATA--GTTATTGACAAATGTATAAGTACAGTGTAAATGAAGTTGGTTGTAGTT-GTT-CCCAATGAATACTTA-AAGAAGCTGCCCATTGAATTTTTATCATGATAAGGTTTTCAAACG---GAAGTCATT-C---AACCTTCAGTGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACTGAACAGTCTTT--CAACTGGATCAGA-TGTTG-CAGGTGTCGTTAAGTGCCTACCTGC--AAGAATTGACATGATAGTTATTTG----AGTCTTCGGA----------TTTCCACAAATGATGCT-------TTCACCAAAA-TAAAGAAGA--T-GTATGTGTGTGTGCATAT-ATATTACT---------GAAAGGTT-TAAAATATTTA--GTTTGGAATCCAAT-CAACAACGGAATTA-GTTTATGC---AAAATA-TA----T-TTCTTGATACT-T-GACAAGTA-A-AAT-GTAT----AGA-GAATCATG-----------GTA-GAAGGG---AT----ATTTAA-GATTTT--AATTCTTCGTTCAAAA----AT----GTTT-TGGTAAGATT
gi|3 : AAACATTTATTACA-G-A-ATA--GTTATTGAAAAATGTATAAGTA-------AATGA---CAGTTGTAGATCATTTCCCAATGAATACTTA-AAGAATCTATCCAT--CATTTT-ATCATGATAAAGTTTTCAAATGTTTG--GTCATTAC---ATCCTGCAGGGGTC-----GAGAGTAGGAATCTTTCCTGCAACACC-AAACGTCTTTATCGACTGGATCAGAGTGTTGACGGTTGTTGACA-GTGCTTCCTTGC-TTAGAGTTGACATGATAG------G----A---TTTCGATTCTGCTTAGTTTCCACAAATGGTGCTTAAGAAATTCACGAAAATTAAAGAAAA--TAGTATGTTT-TGTGCATATAATATGCCCGATAATCTGGAAAAATTGTAAAATATTTA--GGT-----TCCAAT--AACAATTAGACTA-ATT
gi|4 : AAACATTTAT-ACAAG-ATAT----------------GTATAAGTA-------AATGAAGTCG----TAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTT-ATCATGATAAGCTTTTCAAATGTTTG--GTCATT-C---ATCTTGCAGGGGTCAGGCCGGGCGTAG-AATCTTTACTGCAACACCAAAAAGTCTTT--CGACTG
gi|5 : tagggatggggtcaattacatgcaaaagtaattaaattacaattactttgtcaaattcttcaattaaattacaattactgcaattcacaaatgtaattaattaaattacaattactttgataaagtaattaaattacaaatgacatttagtcatttttcaaaaatttattaacAAACATTTAT-ACAAT-ATATC--GTTATTGACA--TTTCTATGTA-----------------GTTGTAGAT-GTTTACCAATGAGTAC-----AGAATCTGTCCATTGCA-TTTTATCATGAT
gi|5 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacTTTAT--CATG-AT------TNNNNNNNNNNNNNNNNAGTA-------AATGAAGT----TGTAGAT-GTTTCCCAATGAGTAC-----AGAATCTGTCCAtnnnnnnnnnnnnnnnnagtaaatgaagttgtagatgtttcccaatgagtacagaatctgtccaaatgttaatatttcctgcaacactga
gi|6 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacaaacatttatacaatatatcgttattgacatttctatgtagttgtagatgtttaccaatgagtacagaatctgtccattgcatGGGCGTAG-AATCTTTCCTGCAGCACTGAAAAGTCTTT--CGACTTAATCAGA-TGTTG-AAGGTGTTGACAAATGCTTCCTCGCTTAAGAATTGACATGATAG------GGAATA---TT--GA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGATCT-ATATATTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--G-T-----TCCAAT-CAGCAATAGAATTA-TTTCATGCAAAAAAATATTT----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATGGTACAGTACATGTA-GAAGGG-AA------ATTTAA-aatgttaatatttcctgcaacactga
gi|7 : AA-TAAAGAAGA--T-TTATGTTTGTGTGCATAT-----TCCT---------GAAAGGTT-TAAAATATTTATAGTT------CCAAT-CAACGATAGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATCAT-T-GA----TA-A-AAT-GTAC----AGA-GAAACATG-----GTACATGTA-GAAGGGAAAATAAAAATTTAA-AATTTT--AATTCTTTATTGAAGC----ATAGCATACCATAGCATGAT
gi|8 : GTATAA-ATATTCCT---------GAAAGGTT----AATATTTA--GTT-----T-CAAC-CAACAATTTAATTA-GTTTAAGG---AAAACA-TA----TATTTTTGACAAT-T-CATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----------GTA-GAAGGGCAAAT----AC---A-GATTAA--AATTCTTCACTGAAGATTTTAT----TTCT-TTGTATGATTgtt
blockSeqs : TA A T A AATG AA CAGTGTA AGTTGG G C TTA T A ATGTTTG AC T CA G T AT G A A TT GATTTCGATTCTGCTTAG C TAAGAAA T TC AG AA GATAATCTG GT TA T TGGAATC . G . AAA T T CTAG A . T T . . T TATA . GTACAG C A AAAATAAAAA . ATT C ATAGCATACCA
blockSeqs : A A . T AG AA . AGTCG G . TTA T G ATGTTTG C T CC . T . . . A T TTATTTGAGTCTTCGGA C . . . G A . T . G TC . T . . T . . . . . C . . . . . A T . CAAATA . T G TTTTATTTCT
blockSeqs : C A . T AG NN . CAG G . TTA T G ACGGAA C G CC . T . . . . . GGAATATTGA C . . . A A . T . T TC . A . . T . . . . . T . . . . . G T . AAAT . T G ATGTTT
blockSeqs : A A . T CG . . AGT G . TTA . C . . G . . C . . . . . T . . . . T C . A . . C . . . . . T . . . . . . . . ATA . A .
blockSeqs : A T . T . . . G . . . . . C . . . T . T . . . . . . . . . . . . . . . . . AAA .
blockSeqs : . . . . . . . T .
blockSeqCons : AGTG** TTA* C**** CC TC*****
originalCons : AAACATTTAT-ACAAG-ATATA--GTTATTGACAAATGTATAAGTA-------AATGAAGTCGGTTGTAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAACGTTTG--GTCATT-C---ATCCTGCAGCGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACCGAAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTTGC-TAAGAATTGACATGATAG------G----A---TTCGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTT-----TCCAAT-CAACAATNGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----GTACATGTA-GAAGGG-AAAT----ATTTAA-GATTTA--AATTCTTCATTGAAGA----AT----TTCTGTGGCATGATT
finalCons : AAACATTTAT-ACAAG-ATATA--GTTATTGACAAATGTATAAGTA-------AATGAAGTG--TTGTAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAACGTTTG--GTCATTC----ATCCTGCAGCGGTCAGGCCGGGCGTAG-AATCTTTCCTGCAACACCGAAAAGTCTTT--CGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTTGC-TAAGAATTGACATGATAG------G----A---TTCGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTTTC-----CAAT-CAACAATNGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----GTACATGTA-GAAGGG-AAAT----ATTTAA-GATTTA--AATTCTTCATTGAAGA----AT----TTCTGTGGCATGATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CACATTAGGGATGGGATCAATAACATACAGAAGTACTTAATTAAATTACAATTACCTTGCCAAATTCTTCAATTAATTACAATTACAATTATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAATTACAAATTACATAT
Unaligned ( gi|10 ): TAGGGATGGGGTCAATTACATACAAAAGTAATCAATTAAATTACAATTACTTTGCCAATTTCTTCAATTAAATTACAATTACGATTACTGGAATTTACAAATGTAATTAATTCAGTTACAATTACTTAAATAAAGTAATTAATTAAACTAAAAATTACATTTTGTCATTTT
Unaligned ( gi|14 ): CTAGGTGTAGGATGGGGTCAATACATACAACGTAATTAAATAAATACAATTATTTGGCCAAATCTTCAATTAAATTACAATTACAATTACT
Unaligned ( gi|15 ): AAGAGTAGGGATGGCGTCAATTACATACAAAAGTAATTAATTGAATTGCAATGCTTTGCCAAATGTATTTAATTGAATTACAATTGA
Unaligned ( gi|17 ): ATGTAGGGATGGGGTTAATTACATACGAAAGTAATTAATTAAATTA
Alignments
lowQualScore : 1111 22222222222222222222 222222222 11111 22 9999999999999999999999999999999 3333333 11 333333333 2222222 111 1111 1111 222222 3333333333 111 222222222222222
lowQualScore : 77 1 5 1 3333 77 44444444444444444444 6 9999 7 7 1 333333333 77777 6 5 5 1 77 8 8 3 0 55 8888888888888888888888888888888 2 0 2222222 8 11 99 88 222222222 88 99 3 6666666 6 1 6 111 1 6 4444 6 6 6 1 6 6 6 4444 6 666666 1 6 1111111111 6 222 5 555555555555555 0
lowQualScore : .. . . . .... .. .................... . .... . . . ......... ..... . . . . .. . . . . .. ............................... . . ....... . .. .. .. ......... .. .. . ....... . . . ... . . .... . . . . . . . .... . ...... . . .......... . ... . ............... .
lowQualScore : 11 7 7 7 4444 99 77777777777777777777 7 9999 3 3 0 444444444 00000 4 0 7 4 99 0 0 2 2 55 8888888888888888888888888888888 5 2 5555555 0 00 00 88 000000000 88 22 2 5555555 7 0 7 777 7 7 2222 7 7 7 7 7 7 7 2222 7 000000 5 7 3333333333 7 444 0 222222222222222 2
consensus : AAACATTTAT-ACAAG-ATATA--GTTATTGACAAATGTATAAGTA-------AATGA-AGT--GTTGTAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAACGTTTG--GTCATT-C---ATCCTGCAGCGGTCAGGCCGGGCGTA-GAATCTTTCCTGCAACACCGAAAAGTCTT--TCGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTTGC-TAAGAATTGACATGATAG------G----A---TTCGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTT-----TCCAAT-CAACAATNGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----GTACATGTA-GAAGGG-AAAT----ATTTAA-GATTTA--AATTCTTCATTGAAGA----AT----TTCTGTGGCATGATT
Reference ( family-352 ) : AAACATTTAT-ACAAG-ATATA--GTTATTGACAAATGTATAAGTA-------AATGA-AGT--GTTGTAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTTTATCATGATAAGNTTTTCAAACGTTTG--GTCATT-C---ATCCTGCAGCGGTCAGGCCGGGCGTA-GAATCTTTCCTGCAACACCGAAAAGTCTT--TCGACTGGATCAGA-TGTTG-CAGGTGTTGACAAGTGCTTCCTTGC-TAAGAATTGACATGATAG------G----A---TTCGGA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGA--T-NTATGTTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--GTT-----TCCAAT-CAACAATNGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----GTACATGTA-GAAGGG-AAAT----ATTTAA-GATTTA--AATTCTTCATTGAAGA----AT----TTCTGTGGCATGATT
gi|1 : AAACATTTAT-AAAAG-ATATA--TTCACTGACA
gi|1 : aaacactagggagggtaattacatacaaagcagtaatttaatcaaattacaattactttgctaaattcttcgattaaattacaattattgcaatttgcaaatgtaattgactaaattatagttactttgataaagtgattaattaaattacaaataatattttgtgagttttcaatattttattaacACATATAT-ACAAGTAAATAATGCTATTGACATACGTATAAGTA-------AATAA-AGT--GGTTT-GAT-GTTTCCCAATGAATACTTCTAAGAATCTGTCCATTTCATTTT-ATCATGATAAGCTTTTCAAAGGTTAA--GTCATT-CTGCATCCTGCAGCAGTCAGG----GAGTA-GAATCTTTCCGGTTACACTGGAAAGTCTT--TCGACTGGATCAGA-TGTTG-CAGGTATTGACAAGTGCTTTCTTGC--AAGAACTGACATGATAG------G-----------GAA----------TTT----------TGCT-------TTCACCAAAA-TAAATACGA--T-TTATGTTTGtatatacaagtaaataatgctattgacatacgtataagtaaataaagtggtttgatgtttcccaatgaatacttctaagaatctgtccatttcattttatcatgataagcttttcaaaggttaagtcattctgcatcctgcagcagtcagggagtagaatctttccggttacactggaaagtctttcgactggatcagatgttgcaggtattgacaagtgctttcttgcaagaactgacatgatagggaattttgctttcaccaaaataaatacgatttatgtttg
gi|11 : aaacactagggagggtaattacatacaaagcagtaatttaatcaaattacaattactttgctaaattcttcgattaaattacaattattgcaatttgcaaatgtaattgactaaattatagttactttgataaagtgattaattaaattacaaataatattttgtgagttttcaatattttattaacaaacatttataaaagatatattcactgAAATATTTA--ATT-------CAATTCAACAATAGAATTTTGTTTATGC---AAAATC-TA----T-TTTTT--TAATAT-GATAAGTATACAAT-TTAT----AGAAGTAACATG-----GTACATGTA-TGAGGG--AAT-----TTTAATGATTCA--AATCATTCATTGAAAA----GT----
gi|12 : TTATGC---AAAA-A-TACTAGT-TTTTTGATCAT-TTGATAAGTA-A-AATTGTATTATAAGA-GAAAAATG-----ATACACGTAAGAAGGG-AAAT------TTAA-GACTTATTAATTCTTCATT-AAGA----AT----TTTTGTGGCATGATT
gi|13 : tggtaCCAATGAATACTTA-AAGAATCTGTCCAATGC-TTTTTATCATAATAAGATTTTTAA---------------------TCCTGCAGTGGTCAGGCAGGGCGTA-TAATCTTTTCTGCAACACTGAAAAGTCTT--Ttt
gi|16 : GGACGGA-GAACTTTGCCAGCGACACTGAATAATATT--TCGACGGGAGCAGA-CGTTG-CA
gi|2 : tAAACATTTAT-CCAAG-ATATA--GTTATTGACAAATGTATAAGTACAGTGTAAATGA-AGTTGGTTGTAGTT-GTT-CCCAATGAATACTTA-AAGAAGCTGCCCATTGAATTTTTATCATGATAAGGTTTTCAAACG---GAAGTCATT-C---AACCTTCAGTGGTCAGGCCGGGCGTA-GAATCTTTCCTGCAACACTGAACAGTCTT--TCAACTGGATCAGA-TGTTG-CAGGTGTCGTTAAGTGCCTACCTGC--AAGAATTGACATGATAGTTATTTG----AGTCTTCGGA----------TTTCCACAAATGATGCT-------TTCACCAAAA-TAAAGAAGA--T-GTATGTGTGTGTGCATAT-ATATTACT---------GAAAGGTT-TAAAATATTTA--GTTTGGAATCCAAT-CAACAACGGAATTA-GTTTATGC---AAAATA-TA----T-TTCTTGATACT-T-GACAAGTA-A-AAT-GTAT----AGA-GAATCATG-----------GTA-GAAGGG---AT----ATTTAA-GATTTT--AATTCTTCGTTCAAAA----AT----GTTT-TGGTAAGATT
gi|3 : AAACATTTATTACA-G-A-ATA--GTTATTGAAAAATGTATAAGTA-------AATGACA----GTTGTAGATCATTTCCCAATGAATACTTA-AAGAATCTATCCAT--CA-TTTTATCATGATAAAGTTTTCAAATGTTTG--GTCATTAC---ATCCTGCAGGGGT-----CGAGAGTAGGAATCTTTCCTGCAACACC-AAACGTCTTTATCGACTGGATCAGAGTGTTGACGGTTGTTGAC-AGTGCTTCCTTGC-TTAGAGTTGACATGATAG------G----A---TTTCGATTCTGCTTAGTTTCCACAAATGGTGCTTAAGAAATTCACGAAAATTAAAGAAAA--TAGTATGTTT-TGTGCATATAATATGCCCGATAATCTGGAAAAATTGTAAAATATTTA--GGT-----TCCAAT--AACAATTAGACTA-ATT
gi|4 : AAACATTTAT-ACAAG-ATAT----------------GTATAAGTA-------AATGA-AGT----CGTAGAT-GTTTCCCAATGAATACTTA-AAGAATCTGTCCATTGCATTTT-ATCATGATAAGCTTTTCAAATGTTTG--GTCATT-C---ATCTTGCAGGGGTCAGGCCGGGCGTA-GAATCTTTACTGCAACACCAAAAAGTCTT--TCGACTG
gi|5 : tagggatggggtcaattacatgcaaaagtaattaaattacaattactttgtcaaattcttcaattaaattacaattactgcaattcacaaatgtaattaattaaattacaattactttgataaagtaattaaattacaaatgacatttagtcatttttcaaaaatttattaacAAACATTTAT-ACAAT-ATATC--GTTATTGAC--ATTTCTATGTA------------------GTTGTAGAT-GTTTACCAATGAGTAC-----AGAATCTGTCCATTGCA-TTTTATCATGAT
gi|5 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacTTTAT--CATG-AT------TNNNNNNNNNNNNNNNNAGTA-------AATGA-AGT----TGTAGAT-GTTTCCCAATGAGTAC-----AGAATCTGTCCAtnnnnnnnnnnnnnnnnagtaaatgaagttgtagatgtttcccaatgagtacagaatctgtccaaatgttaatatttcctgcaacactga
gi|6 : atgatacatacaaaataattaatcttacaattacctgcccaatcttcaattaaattacaattactgtaatttactaatgtattgattaatcacaatttactttgataaagtattaattaaattaaatacatttcatttttgttcaaccattgattagacttaacaaacatttatacaatatatcgttattgacatttctatgtagttgtagatgtttaccaatgagtacagaatctgtccattgcatGGGCGTA-GAATCTTTCCTGCAGCACTGAAAAGTCTT--TCGACTTAATCAGA-TGTTG-AAGGTGTTGACAAATGCTTCCTCGCTTAAGAATTGACATGATAG------GGAATA---TT--GA----------TTTCCACAAATGGTGCT-------TTCACCAAAA-TAAAGAAGATCT-ATATATTTGTGTGCATAT-ATATTCCT---------GAAAGGTT-TAAAATATTTA--G-T-----TCCAAT-CAGCAATAGAATTA-TTTCATGCAAAAAAATATTT----T-TTTTTGATAAT-T-GATAAGTA-A-AAT-GTAT----AGA-GAAACATGGTACAGTACATGTA-GAAGGG-AA------ATTTAA-aatgttaatatttcctgcaacactga
gi|7 : AA-TAAAGAAGA--T-TTATGTTTGTGTGCATAT-----TCCT---------GAAAGGTT-TAAAATATTTATAGTT------CCAAT-CAACGATAGAATTA-GTTTATGC---AAAATA-TA----T-TTTTTGATCAT-T-GA----TA-A-AAT-GTAC----AGA-GAAACATG-----GTACATGTA-GAAGGGAAAATAAAAATTTAA-AATTTT--AATTCTTTATTGAAGC----ATAGCATACCATAGCATGAT
gi|8 : GTATAA-ATATTCCT---------GAAAGGTT----AATATTTA--GTT-----T-CAAC-CAACAATTTAATTA-GTTTAAGG---AAAACA-TA----TATTTTTGACAAT-T-CATAAGTA-A-AAT-GTAT----AGA-GAAACATG-----------GTA-GAAGGGCAAAT----AC---A-GATTAA--AATTCTTCACTGAAGATTTTAT----TTCT-TTGTATGATTgtt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CACATTAGGGATGGGATCAATAACATACAGAAGTACTTAATTAAATTACAATTACCTTGCCAAATTCTTCAATTAATTACAATTACAATTATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAATTACAAATTACATAT
Unaligned ( gi|10 ): TAGGGATGGGGTCAATTACATACAAAAGTAATCAATTAAATTACAATTACTTTGCCAATTTCTTCAATTAAATTACAATTACGATTACTGGAATTTACAAATGTAATTAATTCAGTTACAATTACTTAAATAAAGTAATTAATTAAACTAAAAATTACATTTTGTCATTTT
Unaligned ( gi|14 ): CTAGGTGTAGGATGGGGTCAATACATACAACGTAATTAAATAAATACAATTATTTGGCCAAATCTTCAATTAAATTACAATTACAATTACT
Unaligned ( gi|15 ): AAGAGTAGGGATGGCGTCAATTACATACAAAAGTAATTAATTGAATTGCAATGCTTTGCCAAATGTATTTAATTGAATTACAATTGA
Unaligned ( gi|17 ): ATGTAGGGATGGGGTTAATTACATACGAAAGTAATTAATTAAATTA