lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111
lowQualScore : 11 33333 555 1 4444 111 1 6666 222 1 88888888888888888888888888 1 11111 22 1 22 77777777777777777 3333 1 11 11 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111 22222 2222222 111 111 5555 1 88888888888888888 77777777777777777777777777777 33 11 1 3333 1 000000000000000000000000 2 4444444444 999999999999999 1 33 111 2 11 2 666666666666666666666666666666 2222222222 333333333333333333333 2 6666666 11 333333333333333333333333333333333333333333333333333333333333333333333333 1 1 8888888888888888 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 3 55555 111111111111111111111 1 3333 11 55555555555555 111 1 1 888888888888888888888888888888 1 1 2222 7777777777 1
lowQualScore : 2 88 99999 555 3 5555 111 0 1111 8 66 333 0 1 55555555555555555555555555 0 88888 33 3 77 22222222222222222 5555 7 5 44 44 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 000 99999 99 1 9999999 6 6 222 000 3333 4 33333333333333333 55555555555555555555555555555 22 2 88 3 2222 3 999999999999999999999999 0 8888888888 7 7 555555555555555 0 0 0 55 5 000 4 00 5 8 6 6 000000000000000000000000000000 9999999999 555555555555555555555 5 1 2222222 6 00 8 5 777777777777777777777777777777777777777777777777777777777777777777777777 1 7 3 3 6 6 6 6 5555555555555555 7 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 1 77777 99 666666666666666666666 8 3 0000 6 33 88888888888888 777 2 0 2 0 777777777777777777777777777777 0 3 5 9999 1111111111 3 5
lowQualScore : . .. ..... ... . .... ... . .... . .. ... . . .......................... . ..... .. . .. ................. .... . . .. .. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ... ..... .. . ....... . . ... ... .... . ................. ............................. .. . .. . .... . ........................ . .......... . . ............... . . . .. . ... . .. . . . . .............................. .......... ..................... . . ....... . .. . . ........................................................................ . . . . . . . . ................ . .............................................................................................. . . ..... .. ..................... . . .... . .. .............. ... . . . . .............................. . . . .... .......... . .
lowQualScore : 5 33 33333 000 3 2222 000 0 5555 8 88 000 0 2 55555555555555555555555555 0 55555 88 3 00 77777777777777777 0000 3 3 00 00 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 888 88888 22 0 7777777 7 7 333 000 0000 5 22222222222222222 88888888888888888888888888888 22 5 33 3 3333 3 000000000000000000000000 0 0000000000 3 3 777777777777777 0 8 8 00 0 888 0 88 4 0 7 7 222222222222222222222222222222 2222222222 000000000000000000000 7 2 5555555 0 00 0 4 999999999999999999999999999999999999999999999999999999999999999999999999 0 3 3 3 0 0 7 7 7777777777777777 3 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 7 77777 33 777777777777777777777 3 3 0000 7 88 88888888888888 555 5 0 5 0 000000000000000000000000000000 0 0 0 5555 0000000000 2 0
consensus : CCGGAANT--AAATATA--CATTTTT--GT-TTATTT-TAATGC-A-TTT-TTAAAAA---TAAATACCAACCGTAAAA-T-TA-TTTCAATTATT-CTTAACCGATAAACGATA-TATA-TTGA-C-A---AAAA-TAACGTTTTCCGT-AAATAAA-CACCTTTATGA-TACC----CGAGAACGA--G-CTTCAAAAAT-AAC-GCC-GGATGTGCG-ATA--TTATA---ACTGCATGGGCA----G--TGTTTT-A-CAACA-A-AGGAGAG-AGTG-CNATG--TTGACT--GCTT--GCCGTCT-GATACGC-GC-ATA--CGATAAAACC--AG--TNT-TATT-ATCGGTCG---TA-T-A---CCGATATC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAAN-AG----CAT-GGTAGATGA-AGAGA-AG--AGAAAAA----TATAAA---CG--AAGAN-AT-CTGCGTGT-TCCGCTG-GT--AGT--GGNTTTANT-GCCAAT-ACA----CACGGAATCC--ACAAAGAC-CCAAC--ATCA-AAGGGGAACC-GCGC----CACTCCAGACA---T-------------ACACGA-GAT-A--TATCT--GAAAGAAAAAATTTACNAATCGAAACCCC----ATTCTTCGTNT-CTATTT--GTTT-GTC-TGT-TTTTGTT--TTGTNTTT-TGAT-TTG--AATTTCCCCTTTNTCTNTTTATGATATAT-AATAA-----CTCTCTTAAAATTTTCGCACCCCCCC-CCTCT--CTCTCTCTC-CTACATTG-AA-TGAA--TAANAATTAT--AAGCAATGAAAAAAAA--TATCGA--ATA--CTTGCTAAATATNANTCGCG---ATATAT-CC-GTA--CAAAAACGATA-CTTCGTGCCC--GTC-TAACC-T--TTTCCGT-AGGAA--AG-TAAA------------CAGATAAATCAATGA-GGG--AGGGTGTGTAAGATAANA-----------CCCCCCCCCGTAAGTTTATGTC-AAGCGGCATCGATTACACAAAA-TTTTCGTGTACG-TTTTAT-GAATA---------AAC------------------AGTG----------GAAAA-----------G---G-----TAT-ACTC-GTAA------TGGTNTTTT-GTCAGACTTGGAACTT--------------NTANTTTTTTAGCA-TT---------------CAT---GTGCTG--TAA--TA-ACC-GACTTTTAT-TTTTT-CGATAAGCTCGGAATTC-----A-----T----AAACTTACAATATCAT-TA-----CGAC--ATAATAATCGTCT----TC-TTG------AA-GAAT--ATCCTTCTCCG-G-CGGNAC----CG-------AG-------AC-GAG-CCCGGGTGGAAT-----TAGATCTAAGA-----C-CG---GC-ATT---CGAGCGAAACCCTGA-TTT--G-GCCGCTTCA--TCG--------------AAG---TNTG-TAACCAAG-TATACAACAC-AAANTAAAAAAGT-A-AACATGTCAAG-TTTTCTTNAGCCTCTTCTAATGGACTT-TGAT---ATGAAGTATGGTACAC
Reference ( gi|1 ) : CCGGAAGT--AAATATA-ACATTTT---GT-TTATTTGTAATGC-A-TTT-TTAAAAAAAATAAATACCAACCGTAAAAAT-TA-TTTCAATTAT--CTTAACCGATAAACGAT--CATA-TTGA-C-A---AAA--TAACGTTTTCCGT-AAATAAACCACCTTTGTGA-TACCACCACGAAAACGA--G-CTTCAAAAATAAAC-GCC-GGA-GTGAA-ACA-GTCATACCGACTCCATGTGCAA--GG--TGTTTTAAATAACATACAGTGGAG-AGTG-CAATGCCTTGAC---GCTT--GCCGTCT-GATATTC-GC-AT---CGATAAAACC--AG--TCT-TATTCATCGGTCA---TA-T-A---TCGATACC--ACAACGGCG-GAACAGACATTCT----CAA-G---AAGAAT-AG----CATCGGTAGATGATAAAGA-AG-TAGCGAAA----TATAA----CG--AAGAG-AT-CTGCGTGT-TCCGCCG-GT--AGT--GAGTTTAAT-GCCAAT-ACA----CACGGAATCC--AACAAGACTCCAAC--AACA-AAAGGGAACC-GTGCGCATCACTCCAGACA--TTTCA-------CATACACGA-GAT-AACAATCT--AAAAGGAGAAATTTACAAATC--AACCCC----ATTCTTTATAT-CTATTT--GTTT-ATC-TGTATTTTATT--TCCTTTTT-TAAT-TTG--AATTTCCCATTTATCTGTTTATGA-ATAT-AATAA-----C---CTTAAAATTTTCGCACCCACCCACCTCT--CTCTCTCTC-CTACATTG-AA-TGAA--TAAAAATTATACAAGCAATAAAAAAAAAAATATCGACAATAATCTTGCTAAATA-AATTCGCG---ATATATACCGATATACAAAAACGATAACTTCGTGCCT--GTC-TAACC-C--TTTCCGT-AGGAA--AG-TAAA------------CAGATAAA-CAA-GA-GGG---GGGTGTGTAAGAT--TA-----------CCCCCCCCGGTAAGTTTATGTCCAAGCGGCATCGATTACACAATA-TTT-CGTCTAAG-TTT-AT-GAATA---------AAC------------------AGTG----------GAAAA-----------G---G-----TAT-ACTCCGTA-------TAGCTTTTT-GTCAGACTTTGAACTT--------------GTAGCTTTCTAGCA-TT---------------CAT---GTGCTG--TAAAGTAGACC-GATTTTTAT-TTTTT-CAACAAGCTCGGAAGTC-----A-----T----AAACTTACAATATCATGTATATTCCGAC--ATAATAATCGTTTGATATC-TTAT----CAATAAATCCACCCTTCT-TGTGCCGGCACGTGTCGTGTAAAAAGGGT-TCGAC-GAGTCCCGGGTGGAATA-TACTAGAATTAAGA-----C-CG---GCAATTTCCCGAGCGAAACCCAGA-TTT--G-GCCGCTTCA--TTG--------------AAG---TCTG-TAACCAAG-TATA-AACAC-AAACCAAAAA--T-A-AACAT-TCAAG-TTTTCTTAAGCCTCTT-TAATGGAC---TGATGTGATGAAGTATGGTCCAC
gi|3 : CCGGAATTCTAAAT-TATACATTTTTG-GT-TTAATTTTA-TGC-AATTT-TTAAAA----TAAATACGCACCGTAAAATTATA-TATTAATTATTTCTTAACCGATAAACGATACTATT-TTGATC-A---AAAATTAACGTTTTCTGTCAAATAAAC-ACTTTAATGAATACC-----GAGAACGA--GGCTTCCAAAATAAGC-ACCTGGATGTGCGTGTATGTTATA---ACT----GTGCAGTCGGCATGTTTT---TAACAAACAAGGGAGGAGTGGCAATG--TTGACTTGGCTT--GCCGTCT-GATAT-C-GC-ATA--CGATAATAAC--AG--TCT--ATGGTTTAGTCG---TA-TTA---CACATATC--A-GACGGCA-GGCCAG----TCT---------------AAT-AG----------TGCATGA-----------AGTGAAA----GA--------G--AAGAA-AA-TTG--TGT-TCCGC---GT--AGT--GGGTTTAAT-GCCAAT-ACA----CACGG-ATCC--ACAAAGAC-CCAAC--ATCA-AAGGGAAACC-GCG-----CACTCCAGAC------------------ACACGA-GAT-A--TATCT--GAAAG--AAAATTTAATAATC--GA-----------------AC-CTATTT--GTTT-GTT-TG--TTTTGTTTGTTGTTTTT-TAGT-TTG--AATTTTCTTTTTATCTGTTCATGATAT-T-AATAA-----CTCTCTTAAAATGTTCGCACC------CCCCT--CTCTCTCT--CTACATTG-AA-TGAA--TAA
gi|5 : cttGGAAGT--AGATACA--CATTTTT--GTATCATTT---ATGC-A-TTT-TTAAAAAT--TAAATAC-AACGATAAAA-T-TAGTTTCAATTATT-CTTAACCGATAA-CGATA-TATA-TTGA-C-ATAAAAA--TAACGTTTTCCGT-AAATGAAATACCTTTG-----ATTACC-TAGTAACGATGG-CTTCAAAA-TCAACAGCC-AGG-ATGTG-ACA-TTATTACC-ACTGCATGGGCA----G--TGTTTTAA-CAACA-A-GGAAGAG-AGTG-GCATG--TTGACTG-GGTTAAGCCGTTTTGATACTCTGCTACTTACGATAAA--C--AG--T---TGTT-AGCG-TAA---TACT-A---CAAATATT--ATAGC-------ACAGGCAGTCT------------AAGAGTGAC----CAT-GG-AG-TGA-----A-AG-CAGAGAAAATTATATAAA---CG--ACGAG-AT-CT-CGTGT-TCCCATG-GTTAAGTTCGGTTTTAATAGCCAAT-ACA----CACGGA-TCC--ACAAAGACCC--GC--ATTC-AAAGGCACCC-GCGC----CACTCCAGACA-------------------ACGACGATTAATA-TCT--GAAAGAA-AAATTTACAAATCGAAACCCC----ATTCTTAATATTCTATTT--GTTT-GTT-TTT-TCTTGTT--TTGTTTTT---AT-T-G--AATTTTCTTTTTA-CT-TTTATTATATAT-AATAAGACATT---CATAAAATTTCC---CCCCCCC-CCTCT--CTCTCTCTC--TACATTGGAA-TGA---TAACAATGAT-TAAACAATGAAAAAA-------------TA---CTGCTAAATATAAGTCGCGGAGATATAT-CTGATAT-CAAAACAGATA-CTTC-TGCCT--GTCATAACC-CCTTTTCCGT-AG--A--AGTTAAA------------CAGAtataagtcgcgatatatatccgtagtcaaaaacgatacttcgtacctgtctaacctttttccgtaggaaataaacaatgagggacagggtgtgtaagataacaccccaccccgtaggtctcgattacaaaatattttcgtgtaagttttatgaataattcagaataaaagtggaaaaggtatacggaatgcatttttatttataaggatactcgtaatggttttttgtcagactttga
gi|6 : tcca--AAATAT---CATTTTTTGGT-TTATTT-TA-TGCCA-TTTGTTGAAAA--ATAAATACCAATT-----AAT-TG-TCTTAATTAT--TCT------TAAACGAT---ATATTTGA-CAA---AAA--TAA
gi|10 : gaagagccATGC-A-TTT-TTAATAA---TAAATTCCAACCGTAAAA-T-TA-TTTCAATTAT--------------------------TTGA-C-A---AAAA-TAACGTTTTCCGT-AAATAAA-CACCTTTATGA-TAC-----CGAGAACGAG-G-CTTCAAAAAT-AAC-ACC-AGATGTGAC-ATA--TTATA---ACTGCATAGGCA----G--TGTTT--AACAACA---AGGAGAT-AGTG-Catagtgtagttgtgcacctaatattatccacacttttcatgataactgagaacggtggaggctgttgcaaaatataagacacggatgtggaacgttccatattttattcaactgtacgttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaacatgctcaaagaaaagaaaagtgcacatatggaggtgtgaagagagatagaaaaaaataaaaaccgtaaggagatgcggggtgtatccctgcgtagtggctttttgccaatcacatctacacggatcctcaaaagacaaccaaacttaaagggaactctgcgccaacagttttcgtactaaccattcatgagatatatctgaaag
gi|3 : ---GCCT--GCCGTCT-GATATGT-GTAATA--CGACTAAACCATAGACTGT-TATT-ATCG-------TA-T-G----CGATATC--A-GACGGC
gi|2 : cttccggaattctaaattatacatttttggtttaattttatgcaatttttaaaataaatacgcaccgtaaaattatatattaattatttcttaaccgataaacgatactattttgatcaaaaattaacgttttctgtcaaataaacactttaatgaataccgagaacgaggcttccaaaataagcacctggatgtgcgtgtatgttataactgtgcagtcggcatgtttttaacaaacaagggaggagtggcaatgttgacttggcttATACAC-GC-A----CGATAGAACC--GA--TATATA---AT--GTCAAGATA-T-AACTTCGGTACTGTACCACCCCATGGACAG---TTTTACAACAACG---GAGAAG-TG----CAT--GT-GA-GAGAGAAA-AG-AAGAAAAA----TA-AA----CG--AAGATTAT-CT-CGATT-TTCGC---AT--AGT--GGGCTTATT-GC-AAT-ATA----CACCGGATCA--CACAGAACTCCAAC--T-CA-AAGGAGAACCCGTGC-----ACTCCAGACA--CT---------------ACGA-GAT-AT--ATCTGGAAAAAAAAAAAACTATA--TCGAAACCCCTCGTATTTTTCTTTT-CAATTT--CTTTTATCATGT---TTATA--TGATATAT-TGAT------AATTTCTCCTTTTTCTCT--------------------------CTTAAAATTT-------CACCC-CCTCT--CTTTC-------ACAT-G-AA-TGAACTTAAAATTTA---AAGCAATGAAAAAAAA--TATCGAACATA--CTTGCTAAATA-TAT-CGTC---ATAT---CC--------AAAACGATGCCTACGTGCCCTGGTG-TAACT-T--TTTCCGTTAGAAATAAA-TAAAGTCATTTCTTATCAGATAAATCAATGATGGGTGAGGGTG-GTAAGAT--AA-----------AAACACCTCGTAAGTTTATGT--AAGCGGCATCGATTACACAAAT-TTT-CAGC-ACG-TTTTATTGAATA---------AAC------------------AGTG----------GAAAA-----------G---G-----TAT-ACcagtctaatagtgcatgaagtgaaagagaagaaaattgtgttccgcgtagtgggtttaatgccaatacacacggatccacaaagacccaacatcaaagggaaaccgcgcactccagacacacgagatatatctgaaagaaaatttaataatcgaacctatttgtttgtttgttttgtttgttgttttttagtttgaattttctttttatctgttcatgatattaataactctcttaaaatgttcgcacccccctctctctctctacattgaatgaataatataagtcgcgatatatatccgtagtcaaaaacgatacttcgtacctgtctaacctttttccgtaggaaataaacaatgagggacagggtgtgtaagataacaccccaccccgtaggtctcgattacaaaatattttcgtgtaagttttatgaataattcagaataaaagtggaaaaggtatacggaatgcatttttatttataaggatactcgtaatggttttttgtcagactttga
gi|6 : atattG-GAAGAAACATGCT----CAA-AGAAAAGAAA-AGTGCACATATGGAGGTG-TGAAGAGAGATAGAAAAA----AATAAAAACCGTAAGGAG-ATGCGGGGTGTATCC-CTGCGT--AGT--GGCTTTT-T-GCCAATCACATCTACACGGA-TCCTCAA-AAGAC---AACCAAACTTAAAGGGAACT-CTGCGC--CA------ACAGTTTTCGTACTAACCATTCATGA-GAT-A--TATCT--GAAAGggagctgcattttttgatacaagaacgtattactcgtaatggtattttgtcagacttggaacttttaaaaatcgcatatgtaaacttttaattttttttgcattattattacccacttcatggctgtatacacgactttattttttcgataagctcgaattccacgaaaaaactacaatatcatttacgactaaataaatcttgaattgtccttctcgggcggggaccgagacgagcccgggtggaattagatctaagactcgtctgcattcgagcgaaaccctgattttcgcgccgcatcatcgaagagatatgataacagtctataaccaagttataaaaaagtcgaattttcttcagcttcttcttggactttgatatgaagtatggtaacc
gi|7 : gaagagccaaatatcattttttggtttattttatgccatttgttgaaaaataaataccaattaattgtcttaattattcttaaacgatatatttgacaaaaataaatagtgtagttgtgcacctaatattatccacacttttcatgataactgagaacggtggaggctgttgcaaaatataagacacggatgtggaacgttccatattttattcaactgtacgttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaG----CAT-GG-AGA-GAAAGAGA-AG-----AAAA----TA-AA----CG--AAGAT-AT-CT-CGTGT-TTCGC---AT--AGT--GGCTTTATT-GCCAAT-ATA----CACGG-ATCC--ACAAAGAC-CCAAC--ATCA-AAGGGAACCC-GTG-----CACTCCAGAC------------------ACACGA-GAT-A--TATCT--GGAAAAAAAA---TACTAATCG-AACCCC----ACTCTTTGTTT-TTTTTTCAATTT--TC-T---TTTTAT-----CTGTTTATGATATTGATAATTTCTCCTTTCTTTCTCT------------------------CTTAAAATTTT--CACCC-----CCTCT--CT-----TT-CTACATT-----------------TTA---AAGCAAT-GAAAAAAAAATATCGACAA-A--CTTGCTAAATA-TATCCG------TATATTCC--------AAAACGAT-GCCTCGTGCC
gi|11 : gagtCTGTTTATGA--TATTAATAA-----CTCTCTTAAATTTTTCGCACCCCCCCCCCCCTCACTCTCTCTCTCTACATTG-AACTGAA--TAATAATT-TA-AAGCAATGAAAAAAAcacccgtaagtttatgtcaagcggcatcgattacacaaaattttcatgtacgttttatgaataaacagtggaaaaggtatacggagtgcatttttattgataagtacgtatactcgtaatggtattttgtcagacttggaacttttaaaaatccatatgtatttttttgcattattatttaccca
gi|14 : -AATAA-----CTCTCTTAAAAATTTCGCACCCTCCCA-CTCT--CTCT------CTACATTG-AA-TGAA--TAA
gi|3 : AATATAAGTCGCG---ATATATATCCGTAGTCAAAAACGATA-CTTCGTACCT--GTC-TAACCTT--TTTCCGT-AGGAA------------------------ATAAA-CAATGA-GGGACAGGGTGTGTAAGATAACA-----------CCCCACCCCGTAGGTC---------------TCGATTACAAAATATTTT-CGTGTAAGTTTT-AT-GAATAATTCAGAATAAA------------------AGTG----------GAAAA-----------G---G-----TAT-ACt
gi|4 : cttccggaattctaaattatacatttttggtttaattttatgcaatttttaaaataaatacgcaccgtaaaattatatattaattatttcttaaccgataaacgatactattttgatcaaaaattaacgttttctgtcaaataaacactttaatgaataccgagaacgaggcttccaaaataagcacctggatgtgcgtgtatgttataactgtgcagtcggcatgtttttaacaaacaagggaggagtggcaatgttgacttggcttgccgtctgatatcgcatacgataataacagtctatggtttagtcgtattacacatatcagacggcaggccagtctaatagtgcatgaagtgaaagagaagaaaattgtgttccgcgtagtgggtttaatgccaatacacacggatccacaaagacccaacatcaaagggaaaccgcgcactccagacacacgagatatatctgaaagaaaatttaataatcgaacctatttgtttgtttgttttgtttgttgttttttagtttgaattttctttttatctgttcatgatattaataactctcttaaaatgttcgcacccccctctctctctctacattgaatgaatA-GG-GGA---GGGTGTGTA-GATAATATCCCCCCCCCCCCCCCCCCGG--AGTTTATGTC-AAGCG-CATCGATTACACAATA-TTTTCGTGTAAG-TTTTAT-AAATA---------A-C------------------AGTG----------GAAAGGTTACAGAGATG---GCATTTTAT-ATTTGATAAGATTAATGGTTTTTTTGTAAGACTTTGAACTT--------------GTAG--TTTTAGCATTT---------------CATTACGTGCTGTTTAAACTA-ACCGGATTCTTATATTTGT-CGATAAGCTCGGAAGTC-----A-----TGAAAAAACTTACATTATCAT-----TTACGACATATAATAATCGTCTTGT-TCATTATAAAAAAAAAAAT-GACCCTTCTCTGTG-CGGCACGTGTCGGG--AAAAGGGTAGCGACAGAG-CCCGGGTGGAATATTACTAGAATTAAGA-----C-C----GC-ATT---CGAGCGAAACCCAGA-TTT--G-G-CGCTTCATTTTG--------------AAG---TCTT-TAACCAAGTTATACAACACAAAAGTAAAAAAGTAA-AACATGTCAAGTTTTTCTTAAG-CTCTT-TAATGGACTTTTGATATGA--AGGTATGGTggaatgcatttttatttataaggatactcgtaatggttttttgtcagactttga
gi|7 : gcCCCACCCGTAAGTTTATGTC-AAGCGGCATCGATTACACAAAA-TTTTCATGTACG-TTTTAT-GAATA---------AAC------------------AGTG----------GAAAA-----------G---G-----TAT-ACaacacacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttccacatggcatagtcagatagtacttcaagtacaattcaattcttattggaccaaattaagtgcccccaaagggcaatatgaaggtgtacaatggtataacatcccgttgttgcacgtgctagaggacaattgtgaataacacaggtgt
gi|8 : gagtgcatggagagaaagagaagaaaataaacgaagatatctcgtgtttcgcatagtggctttattgccaatatacacggatccacaaagacccaacatcaaagggaacccgtgcactccagacacacgagatatatctggaaaaaaaatactaatcgaaccccactctttgtttttttttcaattttctttttatctgtttatgatattgataatttctcctttctttctctcttaaaattttcaccccctctctttctacattttaaagcaatgaaaaaaaaatatcgacaaacttgctaaatatatccgtatattccaaaacgatgcctcgtgCCACCCGTAAGTTTATGTC-AAGCGGCATCGATTACACAAAA-TTTTCATGTACG-TTTTAT-GAATA---------AACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-----------GTACG-----TAT-ACTC-GTAA------TGGTATTTT-GTCAGACTTGGAACTTTTAAAAATCCATATGTATTTTTTT-GCA-TTATTATTTACCCACTTCAT---GTGCTG--TAA------CC-GACTTTTAT-TTTTTTCGATAAGCTCGGAATTC-----ACGAAAT----AAACTTACAATATCATGTA----CCGACT-ATAATAATCGTTTG---------------AATG-----ATCCTTCTCTG-GGCGGTAC----CG-------AG-------AC-GAGGCCCGGGTGGAAT-----TAGATCTAAGACTCGTC-TG---GC-ATT---CGAGCGAAACCCTGATTTT--C-GCCGCTTCA--TCGAAGAGATATGAATAAAG---TCTG-TAACCAAG-TATA-AA---------AAAAG------------TCAAG-TTTTCTTCAGCTTCTTCT--TGGACTT-TGAT---ATGAAGTATGGTACACggagtgcatttttattgataagtacgtatactcgtaatggtattttgtcagacttggaacttttaaaaatccatatgtatttttttgcattattatttaccca
gi|15 : TT-GT-GAATA---------AAC------------------AGTG----------GAAAA-----------G---G-----TAT-Aa
gi|2 : AGAA-----------C---G-----TATTACTC-GTAA------TGGTATTTT-GTCAGACTTGGAACTT--------------TTAaggattgagtgcatttatttat
gi|3 : atattatacacgcacgatagaaccgatatataatgtcaagatataacttcggtactgtaccaccccatggacagttttacaacaacggagaagtgcatgtgagagagaaaagaagaaaaataaacgaagattatctcgattttcgcatagtgggcttattgcaatatacaccggatcacacagaactccaactcaaaggagaacccgtgcactccagacactacgagatatatctggaaaaaaaaaaaactatatcgaaacccctcgtatttttcttttcaatttcttttatcatgtttatatgatatattgataatttctcctttttctctcttaaaatttcaccccctctctttcacatgaatgaacttaaaatttaaagcaatgaaaaaaaatatcgaacatacttgctaaatatatcgtcatatccaaaacgatgcctacgtgccctggtgtaactttttccgttagaaataaataaagtcatttcttatcagataaatcaatgatgggtgagggtggtaagataaaaacacctcgtaagtttatgtaagcggcatcgattacacaaattttcagcacgttttattgaataaacagtggaaaaggtatacggagctgcattttttgatacaCGTAA------TGGTTTTTT-GTCAGACTTTGAaaaatcgcatatgtaaacttttaattttttttgcattattattacccacttcatggctgtatacacgactttattttttcgataagctcgaattccacgaaaaaactacaatatcatttacgactaaataaatcttgaattgtccttctcgggcggggaccgagacgagcccgggtggaattagatctaagactcgtctgcattcgagcgaaaccctgattttcgcgccgcatcatcgaagagatatgataacagtctataaccaagttataaaaaagtcgaattttcttcagcttcttcttggactttgatatgaagtatggtaacc
gi|7 : cttccggaattctaaattatacatttttggtttaattttatgcaatttttaaaataaatacgcaccgtaaaattatatattaattatttcttaaccgataaacgatactattttgatcaaaaattaacgttttctgtcaaataaacactttaatgaataccgagaacgaggcttccaaaataagcacctggatgtgcgtgtatgttataactgtgcagtcggcatgtttttaacaaacaagggaggagtggcaatgttgacttggcttgccgtctgatatcgcatacgataataacagtctatggtttagtcgtattacacatatcagacggcaggccagtctaatagtgcatgaagtgaaagagaagaaaattgtgttccgcgtagtgggtttaatgccaatacacacggatccacaaagacccaacatcaaagggaaaccgcgcactccagacacacgagatatatctgaaagaaaatttaataatcgaacctatttgtttgtttgttttgtttgttgttttttagtttgaattttctttttatctgttcatgatattaataactctcttaaaatgttcgcacccccctctctctctctacattgaatgaataatataagtcgcgatatatatccgtagtcaaaaacgatacttcgtacctgtctaacctttttccgtaggaaataaacaatgagggacagggtgtgtaagataacaccccaccccgtaggtctcgattacaaaatattttcgtgtaagttttatgaataattcagaataaaagtggaaaaggtatacggaatgcatttttatttataaggatactTTTT-GTCAGACTTGGAACTT--------------TTA
gi|2 : gagtgcatggagagaaagagaagaaaataaacgaagatatctcgtgtttcgcatagtggctttattgccaatatacacggatccacaaagacccaacatcaaagggaacccgtgcactccagacacacgagatatatctggaaaaaaaatactaatcgaaccccactctttgtttttttttcaattttctttttatctgtttatgatattgataatttctcctttctttctctcttaaaattttcaccccctctctttctacattttaaagcaatgaaaaaaaaatatcgacaaacttgctaaatatatccgtatattccaaaacgatgcctcgtgcccacccgtaagtttatgtcaagcggcatcgattacacaaaattttcatgtacgttttatgaataaacagtggaaaaggtatacggagtgcatttttattgataagtacgtatactcgtaatggta-TT---------------CAT---G-GCTG--TA---TACAC--GACTTT-AT-TTTTT-CGATAAGCTCG-AATTCCACGAA-----A----AAACT-ACAATATCATTTA-----CGAC--TAAATAA---------ATC-TTG----------AATT-GTCCTTCT-CGGGCGGGGAC----CG-------AG-------AC-GAG-CCCGGGTGGAAT-----TAGATCTAAGA-----CTCGTCTGCA--TTC--GAGCGAAACCCTGA-TTTTCGCGCCGCATCA--TCG--------------AAGAGATATGATAAC--AG-TCTATAAC-C-AAGTTATAAA--A-A-AG----TCGAA-TTTTCTTCAGCTTCTTCT--TGGACTT-TGAT---ATGAAGTATGGTaaaatccatatgtatttttttgcattattatttaccca
gi|12 : atattatacacgcacgatagaaccgatatataatgtcaagatataacttcggtactgtaccaccccatggacagttttacaacaacggagaagtgcatgtgagagagaaaagaagaaaaataaacgaagattatctcgattttcgcatagtgggcttattgcaatatacaccggatcacacagaactccaactcaaaggagaacccgtgcactccagacactacgagatatatctggaaaaaaaaaaaactatatcgaaacccctcgtatttttcttttcaatttcttttatcatgtttatatgatatattgataatttctcctttttctctcttaaaatttcaccccctctctttcacatgaatgaacttaaaatttaaagcaatgaaaaaaaatatcgaacatacttgctaaatatatcgtcatatccaaaacgatgcctacgtgccctggtgtaactttttccgttagaaataaataaagtcatttcttatcagataaatcaatgatgggtgagggtggtaagataaaaacacctcgtaagtttatgtaagcggcatcgattacacaaattttcagcacgttttattgaataaacagtggaaaaggtatacggagctgcattttttgatacaagaacgtattactcgtaatggtattttgtcagacttggaacttttaaaaatcgcatatgtaaacttttaattttttttgcattattattacccacCGCTTCA--TTG--------------AAG---TATG-TAACCAAG-TAT--AACAC-AAACAAAAAAAGT-AGAACATGTCAAG-TTTTCTTAAG-CTCAT-TAATGGACTT-TGAT---ATGAAGAATGGTACAaacc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCGCTGAATAGTCAATAAGTACTATACAAGATACAATTCAATTCGTTATATGATCAAATTTTTTCCCAATAAAAATAGGGCAATAAGAAGGTGTAACCAACTAGTTAAGCATCCCGTGTTGGCACGTCGGCCTTGATAAATAACCAGGTGT
Unaligned ( gi|13 ): TGTTCTATGGCGTGTGTGTATTGCCAATACACAGTGTCGTACGTAGATTCACGTAGACCCTATTCATAGGGAAACGCGCACCTTATGTATACAACATATAT
Unaligned ( gi|16 ): ACCACCCCATGGACAGTTTTTTAACAACAAGGAGAGAGTGCATG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 11 1111111 1111 111 111 11111111111 111111 11 2222222 111 111 11 22222 44444444 22222222 55555555555555 222222 11 22222 11 111 11 2222222222 1 3333 1 11 4444444444444444444444444444444 22222 1 6666666666666666666666666666666666666666666 1111 1111111 111111 111 11 22222 1111 1111 2222222 11 2222222222222222222 3333333333 1 1111 22222 11 11 1111 111 33333333333333 2222222222 333333 111 11111 11 33 11 11 2222 55555555555555 11 1 11 1 1 1111 11 555555555555555555555 1 222222 44444444444 0000000000000000000000000000000000000000000000000000000000000000000 2222222 444444444444444444444444444444444444444444444444444444444444444444444444 111 44444444444 1 1 1 5555555555555555 444444444 1 1 11 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 44444 333333333333 1 111 3333 11 222 1 1 111 22222222222 2222 111
lowQualScore : 1 33 0 33 8888888 7777 8 8 8 444 8 5 3 8 8 000 22222222222 5 444444 8 11 0 8 6666666 444 8 8 8 444 8 11 8 8 5 33333 88888888 8 8 22222222 0 77777777777777 000000 99 6 11 99999 8 88 44 0 333 33 7777777777 3 0000 0 22 55 2222222222222222222222222222222 44444 55 0 0 9999999999999999999999999999999999999999999 6666 1 7777777 000000 3 3 111 77 6 77 5 44444 77 77 1 1 5 5 2222 2222 6666666 5 5 33 8 1 0 77 5 5555555555555555555 5555555555 5 77 77 99 3 777 1 8 5 0 7777 00000 99 6 8 88 11 0 4444 999 1 22 222 44 1 22222222222222 77 1 0 3333333333 5 000000 5 5 1 77 222 88888 8 0 33 77 33 3 77 1 4444 0 55555555555555 8 8 8 11 0 33 0 0 7777 66 555555555555555555555 7 0 000000 3 3 3 1 66666666666 99 2 4 2 5 2222222222222222222222222222222222222222222222222222222222222222222 5 6 1111111 1 6 666666666666666666666666666666666666666666666666666666666666666666666666 777 3 88888888888 0 3 0 0 2 3 9999999999999999 3 777777777 0 0 33 2 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 66666 4 999999999999 0 777 4 0000 11 888 1 88 5 88 6 0 222 1 11111111111 8 1 6 2222 88 444 8 8
lowQualScore : . .. . .. ....... .... . . . ... . . . . . ... ........... . ...... . .. . . ....... ... . . . ... . .. . . . ..... ........ . . ........ . .............. ...... .. . .. ..... . .. .. . ... .. .......... . .... . .. .. ............................... ..... .. . . ........................................... .... . ....... ...... . . ... .. . .. . ..... .. .. . . . . .... .... ....... . . .. . . . .. . ................... .......... . .. .. .. . ... . . . . .... ..... .. . . .. .. . .... ... . .. ... .. . .............. .. . . .......... . ...... . . . .. ... ..... . . .. .. .. . .. . .... . .............. . . . .. . .. . . .... .. ..................... . . ...... . . . . ........... .. . . . . ................................................................... . . ....... . . ........................................................................ ... . ........... . . . . . . ................ . ......... . . .. . ............................................................................................. . . ..... . ............ . ... . .... .. ... . .. . .. . . ... . ........... . . . .... .. ... . .
lowQualScore : 0 88 0 22 0000000 6666 0 0 0 000 0 0 2 0 0 000 00000000000 6 888888 0 00 8 0 0000000 000 0 0 0 000 0 88 0 0 0 44444 00000000 0 0 66666666 8 66666666666666 888888 22 7 00 00000 0 88 88 8 888 88 7777777777 3 2222 0 55 88 5555555555555555555555555555555 00000 00 0 2 3333333333333333333333333333333333333333333 0000 0 0000000 000000 7 2 777 77 7 55 7 33333 99 99 0 0 7 7 1111 1111 4444444 7 7 66 4 7 4 99 7 7777777777777777777 7777777777 7 99 99 22 6 000 0 0 6 8 0000 44444 00 4 0 88 00 8 8888 888 4 22 000 66 0 00000000000000 99 7 1 9999999999 7 666666 7 7 4 99 222 55555 0 8 88 55 88 2 44 0 0000 8 00000000000000 0 0 0 00 0 88 0 0 2222 55 333333333333333333333 3 0 888888 2 2 2 0 22222222222 22 5 0 5 7 8888888888888888888888888888888888888888888888888888888888888888888 0 7 7777777 0 7 000000000000000000000000000000000000000000000000000000000000000000000000 555 2 88888888888 0 2 0 0 5 0 8888888888888888 2 000000000 0 0 88 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 22222 0 000000000000 0 555 0 0000 00 000 0 88 0 66 4 6 888 4 44444444444 0 0 4 2222 88 000 0 0
consensus : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTATT-CTTAACCGATAAACGATA-TATATTGA-CA--AAAAT-AA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATGA-T-ACC----CGAGAACGATG------G-CTTCAAAA-ATAA-C-GC-C-GGATGTG---CGT---ATA--TTAT--A---ACTG--CA-TGGGCA--GTGTTTT--AA-CAA-CA-A-GGGAGAGAGTG-CAATG--TTGACT--GC-TT--GCCGTCT-GATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TA-T-A---CCGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAGA---A-G-AGAA-AA--ATATAAAC---GAAGAG-AT-CTGCGTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----CGGA-----ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAGACAT-------ACACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTC-GTTTGTC-TGT-T--TTTGTT--T-TG-TTTTTTGATTTGAATTTCCCCTTTNTCTGTTTATGATAT-TAATA--ACTCTCTTAAAATTTTCGCA---CCCCCCC-CCTCTCTCTCTCT--CTACATT-GAA-TGAA--TAA-AATTA-TA--AGCAATG-AAAAAAAA--TATCGAC-ATA--CTTGCTAAATATAANTCGC---GATATATA-CCGA--TA--CAAAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CC-TTTTCCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--G--AGGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGTC-AAGCGGCATCGATTACACAANATTTTCGTGTANGTTTTA-TGAATA---------AAC------------------AGTG----------GAAAAGT----------G-----TAT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTGGA-----------------------ACTTTTAG-------------TTTTTTN-GCATTATTATT--CC--CT-CAT---GTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGTTA-----C-GAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAATG-ACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT---TAGANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCATC--GAAGAGATATG-TAACCAAGT-ATATAACACAAAN-TAAAAAAGTA-AA-CATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
Reference ( family-34 ) : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTATT-CTTAACCGATAAACGATA-TATATTGA-CA--AAAAT-AA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATGA-T-ACC----CGAGAACGA--------G-CTTCAAAA-ATAA-C-GC-C-GGATGTG---CG----ATA--TTAT--A---ACTG--CA-TGGGCA--GTGTTTT--A--CAA-CA-A-AGGAGAGAGTG-CNATG--TTGACT--GC-TT--GCCGTCT-GATAC---GC-GCATACGATAAAACCAGTNT-TATT-ATCGGTCG---TA-T-A---CCGATATC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAGA---A-G-AGAA-AA--ATATAAAC---GAAGAN-AT-CTGCGTGT-TCCGCTG-GT--AGT--GGNTTTANT-GCCAAT-AC----ACA----CGGA-----ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAGACAT-------ACACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACNA-ATCGAAACCCC----ATTCTTCGT-NTCTATTT--GTTTGTC-TGT-T--TTTGTT--T-TG-TNTTTTGATTTGAATTTCCCCTTTNTCTNTTTATGATATATAATA--ACTCTCTTAAAATTTTCGCA---CCCCCCC-CCTCTCTCTCTCTC-CTACATT-GAA-TGAA--TAANAATTA-TA--AGCAATG-AAAAAAAA--TATCGA--ATA--CTTGCTAAATATNANTCGC---GATATAT--CCG---TA--CAAAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CC-TTTTCCG-TAGGA--AAG-TAAA------------CAGATAAATCAATGA-GG--G--AGGGTGTGTAAGATAANA----------CCCCCCCCCGTAAGTTTATGTC-AAGCGGCATCGATTACACAAAATTTTCGTGTACGTTTTA-TGAATA---------AAC------------------AGTG----------GAAAAG-----------G-----TAT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTGGA-----------------------ACTTNTAN-------------TTTTTTA-GCATT---------------CAT---GTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAATTC-----A-----T----AAACTTACAATATCAT-T-A-----C-GAC-ATA--ATAATCGTCT----TCTT-----------G--AA-GAAT--ATCCTTCT----CCG-G-CG-GN-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAAT-----TAGATCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCTGATTT--G-GCCGCTTCATC--GAAG---TNTG-TAACCAAGT-ATACAACACAAAN-TAAAAAAGTA-AA-CATGTCAAG-TTTTCTTNAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
gi|1 : CCGGAAGT--AAAT-ATAACATTTT---G-T-TTATTTGTAATGC-ATTT-TT-AAAAAAAAT-AAATACCAACCGTAAAAATTA-T-T-TCAATTAT--CTTAACCGATAAACGAT--CATATTGA-CA--AAA-T-AA-------CGTTTT---CCGT-AA-AT-AA---ACCACCTTT-GTGA-T-ACCACCACGAAAACGA--------G-CTTCAAAA-ATAAAC-GC-C-GGA-GTG---AA----ACAG-TCAT--ACCGACTC--CA-TGTGCAAGGTGTTTT--AAATAA-CATACAGTGGAGAGTG-CAATGCCTTGAC---GC-TT--GCCGTCT-GATAT---TC-GCAT-CGATAAAACCAGTCT-TATTCATCGGTCA---TA-T-A---TCGATACC--ACAACGGCG-GAACAGACATTCT----CAA-G---AAGAATAGC------ATCGGTAGATG--ATAAAGA---A-GTAGCG-AA--ATATAA-C---GAAGAG-AT-CTGCGTGT-TCCGCCG-GT--AGT--GAGTTTAAT-GCCAAT-AC----ACA----CGGA-----ATC-CAA-CAAGACT-CCAACAACAAAAGGGAA--CC-GTGCGCATCA----CT------CCAGACATTTCACATACACGA-GAT--AACAATCTA--AAAGGAGAAATTTACAA-ATC--AACCCC----ATTCTTTAT-ATCTATTT--GTTTATC-TGTAT--TTTATT--T-CC-TTTTTTAATTTGAATTTCCCATTTATCTGTTTATGA-ATATAATA--AC---CTTAAAATTTTCGCA---CCCACCCACCTCTCTCTCTCTC-CTACATT-GAA-TGAA--TAAAAATTA-TACAAGCAATA-AAAAAAAAAATATCGACAATAATCTTGCTAAATA-AATTCGC---GATATATA-CCGATATA--CAAAAAC-GATAACTT-CGTGCCT--GTC-TAA--CC-CTTTCCG-TAGGA--AAG-TAAA------------CAGATAAA-CAA-GA-GG--G---GGGTGTGTAAGAT--TA----------CCCCCCCCGGTAAGTTTATGTCCAAGCGGCATCGATTACACAATATTT-CGTCTAAGTTT-A-TGAATA---------AAC------------------AGTG----------GAAAAG-----------G-----TAT-ACTCCG-------T-ATAGCTTTTT-GTCAGACTTTGA-----------------------ACTTGTAG-------------CTTTCTA-GCATT---------------CAT---GTGCTGT---AAAGTAGACCG-ATTTTTAT-TTTTT-CAACAAGCTCGGAAGTC-----A-----T----AAACTTACAATATCATGT-ATATTCC-GAC-ATA--ATAATCGTTTGATATCTT-----------ATCAATAAATCCACCCTTCTTGTGCCG-G-CACGT-GT----CGTGTAAAAAGGGTTCGA------------C-GAGTCCCGGGTGGAATATAC-TAGAATTAAGAC-C-----G---GCAATTTCCCGAGCGAAACCCAGATTT--G-GCCGCTTCATT--GAAG---TCTG-TAACCAAGT-ATA-AACACAAAC-CAAAAA--TA-AA-CAT-TCAAG-TTTTCTTAAGCCTCTT-TAATGGAC---TGATGTGATGAA-GTATGGT-CCAC
gi|10 : ATGC-ATTT-TT-AATAA---T-AAATTCCAACCGTAAAA-TTA-T-T-TCAATTATT-------------------------TGA-CA--AAAAT-AA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATGA-T-A-C----CGAGAACGAG-------G-CTTCAAAA-ATAA-C-AC-C-AGATGTG---AC----ATA--TTAT--A---ACTG--CA-TAGGCA--GTGTTTA--A--CAA-C--A-AGGAGATAGTG-C
gi|11 : CTGTTTATGATAT-TAATA--ACTCTCTTAAATTTTTCGCACCCCCCCCCC-CCTCACTCTCTCTCTCTACATT-GAACTGAA--TAATAATTT-AA--AGCAATG-AAAAAAA
gi|12 : CGCTTCATT--GAAG---TATG-TAACCAAGT-ATA--ACACAAAC-AAAAAAAGTAGAA-CATGTCAAG-TTTTCTTAAGC-TCAT-TAATGGAC-TTTGAT---ATGAA-GAATGGT-ACA
gi|13 : TGT-TCTA-TG-GC---GT--GTGTGTATT-GCCAAT-AC----ACAGTGTCGTACGTAGATT-CAC-GTAGAC--CCTAT-TCATAGGGAAA---C-GCG-----CA----CC------TTATGTAT-------ACA--A-CAT--AT--AT
gi|14 : AATA--ACTCTCTTAAAAATTTCGCA---CCCTCCC-ACTCTCTCT------CTACATT-GAA-TGAA--TAA
gi|15 : TTG-TGAATA---------AAC------------------AGTG----------GAAAAG-----------G-----TAT-At
gi|16 : --CA-TGGACA--GTTTTTT--AA-CAA-CA-A--GGAGAGAGTG-C-ATG--aggattgagtgcatttatttat
gi|2 : accacccATAC---AC-GCA--CGATAGAACCGATAT--ATA-AT--GTCAAGATA-T-AACTTCGGTACTGTACCACCCCATGGACAG---TTTTACAACAACG---GAGAAGTGC------AT-G-----TG--AGAGAGA---A-A-AGAAGAA--AAATAAAC---GAAGATTAT-CT-CGATT-TTCGC---AT--AGT--GGGCTTATT-GC-AAT-AT----ACA----CCGG-----ATCACAC-AGAACT--CCAAC-TCAAAGGAGAA--CCCGTGC-----A----CT------CCAGACAC--------TACGA-GAT--AT--ATCTGGAAAAAAAAAAA---ACTATATCGAAACCCCTCGTATTTTTCTT-TTCAATTTC-TTTTATCATGT-T--TATA------TGATATATTGAT---AATTTCTCCTTTTT----------------------CTCTCTTAAAATTT---CA-------CCC-CCTCTCTTTC-------ACA-T-GAA-TGAACTTAAAATTTA--A--AGCAATG-AAAAAAAA--TATCGAACATA--CTTGCTAAATAT--ATCGT-----CATAT--CC----------AAAAC-GATG-CCTACGTGCCCTGGTG-TAA--CT-TTTTCCGTTAGAAATAAA-TAAAGTCATTTCTTATCAGATAAATCAATGATGGGTG--AGGGTG-GTAAGATAAAA------------ACACCTCGTAAGTTTATGT--AAGCGGCATCGATTACAC-AAATTTTCA-GCACGTTTTATTGAATA---------AAC------------------AGTG----------GAAAAG-----------G-----TAT-AC
gi|2 : atattAGAAC-----------G-----TATTACT-CG-------TAATGGTATTTT-GTCAGACTTGGAACTTTTAAAAATCGCATATGTAAACTTTTAA-------------TTTTTTTTGCATTATTATTACCCACTT-CAT---G-GCTGT---A---TA-CACG-ACTTT-AT-TTTTT-CGATAAGCTCG-AATTCCACGAA-----A----AAACT-ACAATATCAT-TTA-----C-GAC-TAA--ATAAA---------TCTT-----------G--AA-T--T--GTCCTTCT----CGG-G-CG-GGGAC----CG---A----------GA------------C-GAG-CCCGGGTGGAAT-----TAGATCTAAGACTC-----GTCTGC-ATT---CGAGCGAAACCCTGATTTTCGCGCCGCATCATC--GAAGAGATATGATAAC--AGT-CTATAAC-CAAGT-TATAAAA--A-A-----GTCGAA-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ggagctgcattttttgatacaagaacgtattactcgtaatggtattttgtcagacttggaacttttaaaaatcgcatatgtaaacttttaattttttttgcattattattacccacttcatggctgtatacacgactttattttttcgataagctcgaattccacgaaaaaactacaatatcatttacgactaaataaatcttgaattgtccttctcgggcggggaccgagacgagcccgggtggaattagatctaagactcgtctgcattcgagcgaaaccctgattttcgcgccgcatcatcgaagagatatgataacagtctataaccaagttataaaaaagtcgaattttcttcagcttcttcttggactttgatatgaagtatggtaacc
gi|3 : atattatacacgcacgatagaaccgatatataatgtcaagatataacttcggtactgtaccaccccatggacagttttacaacaacggagaagtgcatgtgagagagaaaagaagaaaaataaacgaagattatctcgattttcgcatagtgggcttattgcaatatacaccggatcacacagaactccaactcaaaggagaacccgtgcactccagacactacgagatatatctggaaaaaaaaaaaactatatcgaaacccctcgtatttttcttttcaatttcttttatcatgtttatatgatatattgataatttctcctttttctctcttaaaatttcaccccctctctttcacatgaatgaacttaaaatttaaagcaatgaaaaaaaatatcgaacatacttgctaaatatatcgtcatatccaaaacgatgcctacgtgccctggtgtaactttttccgttagaaataaataaagtcatttcttatcagataaatcaatgatgggtgagggtggtaagataaaaacacctcgtaagtttatgtaagcggcatcgattacacaaattttcagcacgttttattgaataaacagtggaaaaggtatacggagctgcattttttgatacaCCGGAATTCTAAATTATA-CATTTTT--GGT-TTAATT-TTATGC-AATT-TT-TAAAA---T-AAATACGCACCGTAAAA-TTA-TATATTAATTATTTCTTAACCGATAAACGATACTATTTTGATCA--AAAATTAA-------CGTTTT---CTGTCAA-AT-AA---AC-ACTTTA-ATGAAT-ACC-----GAGAACGA--------GGCTTCCAAA-ATAAGC-AC-CTGGATGTG---CGTGT-ATG--TTAT--A---ACTGTGCAGTCGGCA---TGTTTTTAA--CAAACA-A-GGGAG-GAGTGGCAATG--TTGACTTGGC-TT--GCCGTCT-GATAT----C-GCATACGATAATAACAGTCTATGGT--TTAGTCG---TA-TTA---CACATATC--A-GACGGCA-GGCCAG----TCT---------------AATAG------------TGCATG--A-AGTGA---A---AGA-----------------GAAGAA-AA-TTG--TGT-TCCGC---GT--AGT--GGGTTTAAT-GCCAAT-AC----ACA----CGGA------TC-CAC-AAAGAC--CCAACATCAAAGGGAAA--CC-GCG-----CA----CT------CCAGAC---------ACACGA-GAT--AT--ATCTG--AAAG--AAAATTTAATA-ATCGAA--------------------CCTATTT--GTTTGTT-TG--T--TTTGTTTGT-TG-TTTTTTAGTTTGAATTTTCTTTTTATCTGTTCATGATAT-TAATA--ACTCTCTTAAAATGTTCGCA------CCCC-CCTCTCTCTCT----CTACATT-GAA-TGAA--TAA----TA-TA--AGacc
gi|3 : cttAATATAAGTCGC---GATATATATCCG---TAGTCAAAAAC-GATA-CTT-CGTACCT--GTC-TAA--CCTTTTTCCG-TAGGA--AA--TAAA---------------------CAATGA-GG--GACAGGGTGTGTAAGATAACA----------CCCCACCCCGTAGGTC---------------TCGATTACAAAATATTTTCGTGTAAGTTTTA-TGAATAATTCAGAATAAA------------------AGTG----------GAAAAG-----------G-----TAT-A---CG-------GAATGCATTTTT-ATtcgcgatatatatccgtagtcaaaaacgatacttcgtacctgtctaacctttttccgtaggaaataaacaatgagggacagggtgtgtaagataacaccccaccccgtaggtctcgattacaaaatattttcgtgtaagttttatgaataattcagaataaaagtggaaaaggtatacggaatgcatttttatttataaggatactcgtaatggttttttgtcagactttga
gi|4 : cttccggaattctaaattatacatttttggtttaattttatgcaatttttaaaataaatacgcaccgtaaaattatatattaattatttcttaaccgataaacgatactattttgatcaaaaattaacgttttctgtcaaataaacactttaatgaataccgagaacgaggcttccaaaataagcacctggatgtgcgtgtatgttataactgtgcagtcggcatgtttttaacaaacaagggaggagtggcaatgttgacttggcttgccgtctgatatcgcatacgataataacagtctatggtttagtcgtattacacatatcagacggcaggccagtctaatagtgcatgaagtgaaagagaagaaaattgtgttccgcgtagtgggtttaatgccaatacacacggatccacaaagacccaacatcaaagggaaaccgcgcactccagacacacgagatatatctgaaagaaaatttaataatcgaacctatttgtttgtttgttttgtttgttgttttttagtttgaattttctttttatctgttcatgatattaataactctcttaaaatgttcgcacccccctctctctctctacattgaatgaat-GG--G--AGGGTGTGTA-GATAATATCCCCCCCCCCCCCCCCCCG-GAGTTTATGTC-AAGCG-CATCGATTACACAATATTTTCGTGTAAGTTTTA-TAAATA---------A-C------------------AGTG----------GAAAGGTTACAGAGATGGCATTTTAT-ATT-TGATAAGATTAATGGTTTTTTTGTAAGACTTTGA-----------------------ACTTGTAG-------------TTTT--A-GCATTT--------------CATTACGTGCTGTTTAAAC-TA-ACCGGATTCTTATATTTGT-CGATAAGCTCGGAAGTC-----A-----TGAAAAAACTTACATTATCAT-TTA-----C-GAC-ATATAATAATCGTCT----TGTTCATTATAAAAAA--AA-AAATG-ACCCTTCT----CTGTG-CG-GC-ACGTGTCG---G----------GAAAAGGGTAGCGACAGAG-CCCGGGTGGAATATTACTAGAATTAAGAC-C-----G----C-ATT---CGAGCGAAACCCAGATTT--G-GC-GCTTCATTTTGAAG---TCTT-TAACCAAGTTATACAACACAAAAGTAAAAAAGTA-AAACATGTCAAGTTTTTCTTAAG-CTCTT-TAATGGACTTTTGAT---ATGAAGGTATGGTAACACttataaggatactcgtaatggttttttgtcagactttga
gi|5 : gcagGGAAGT--AGAT-ACA-CATTTTT--G-TATCATTT---ATGC-ATTT-TT-AAAAA---TTAAATAC-AACGATAAAA-TTAGT-T-TCAATTATT-CTTAACCGATAA-CGATA-TATATTGA-CATAAAAAT-AA-------CGTTTT---CCGT-AA-ATGAA---AT-ACCTTT---GA-TTACC----TAGTAACGATG------G-CTTCAAAA-TCAA-CAGC-CAGGATGTGA--CA----TTA--TTAC--C---ACTG--CA-TGGGCA--GTGTTTT--AA-CAA-CA-A-GGAAGAGAGTG-GCATG--TTGACT--GGGTTAAGCCGTTTTGATACTCTGCTACTTACGATAAA--CAGT---TGTT-AGCG-TAA---TACT-A---CAAATATT--AT------A-GCACAGGCAGTCT-----AA-G---AGTGAC--C------AT-GG-AG-TG--A-A-AGC---A-G-AGAA-AATTATATAAAC---GACGAG-AT-CT-CGTGT-TCCCATG-GTTAAGTTCGGTTTTAATAGCCAAT-AC----ACA----CGGA------TC-CAC-AAAGAC--CCG-CATTCAAAGGCAC--CC-GCGC----CA----CT------CCAGACA----------ACGACGATTAAT--ATCTG--AAAG-AAAAATTTACAA-ATCGAAACCCC----ATTCTTAATATTCTATTT--GTTTGTT-TTT-T--CTTGTT--T-TG-TTTTT--A-TTGAATTT--TCTTTTTACTTTTATTATATATAATAAGACATTCATAAAATTTCC------CCCCCCC-CCTCTCTCTCTCT--CTACATTGGAA-TG-A--TAACAATGATTA--AACAATG-AAAA-----------A--ATA--C-TGCTAAATATAAGTCGCGGAGATATAT--CTGA--TA--TCAAAACAGATA-CTT-C-TGCCT--GTCATAACCCC-TTTTCCG-TAG----AAGTTAAA------------CAGAacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttccacatggcatagtcagatagtacttcaagtacaattcaattcttattggaccaaattaagtgcccccaaagggcaatatgaaggtgtacaatggtataacatcccgttgttgcacgtgctagaggacaattgtgaataacacaggtgt
gi|6 : tccaGAGCC--AAAT-AT--CATTTTTTGG-T-TTATTT-TA-TGCCATTTGTTGAAAAA---T-AAATACCAATT----AA-TTG-T-C-TTAATTATT-CT-------TAAACGATA-TAT-TTGA-CA--AAAAT-AAATAGTGTAGTTGTGCACC-T-AATAT-TATCCAC-ACTTTTCATGA-T-AAC----TGAGAACGGTGGAGGCTG-TTGCAAAATATAA-G-ACAC-GGATGTGGAACGTTCCATATTTTATTCA---ACTG--TA-CG
gi|6 : gaaCATGCT----CAA-AGAAAAGAAAAGTGCACATAT-GG-AGGTGTGA-AGAGAGATA-G-AAAA-AA--ATAAAAACCGTAAGGAG-ATGCGGGGTGTATCC-CTGCGT--AGT--GGCTTT-TT-GCCAATCACATCTACA----CGG------ATC-CTCAAAAGACAACCAAACTTAAA-GGGAACTCT-GCGC----CAACAGTTTTCGTACTAACCAT-------TCATGA-GAT--AT--ATCTG--AAAGttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaacatgctcaaagaaaagaaaagtgcacatatggaggtgtgaagagagatagaaaaaaataaaaaccgtaaggagatgcggggtgtatccctgcgtagtggctttttgccaatcacatctacacggatcctcaaaagacaaccaaacttaaagggaactctgcgccaacagttttcgtactaaccattcatgagatatatctgaaag
gi|7 : gaagagccaaatatcattttttggtttattttatgccatttgttgaaaaataaataccaattaattgtcttaattattcttaaacgatatatttgacaaaaataaatagtgtagttgtgcacctaatattatccacacttttcatgataactgagaacggtggaggctgttgcaaaatataagacacggatgtggaacgttccatattttattcaactgtacgttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaaATG--G-AGAGA---AAG-AGAA-GA--AAATAAAC---GAAGAT-AT-CT-CGTGT-TTCGC---AT--AGT--GGCTTTATT-GCCAAT-AT----ACA----CGGA------TC-CAC-AAAGAC--CCAACATCAAAGGGAAC--CC-GTG-----CA----CT------CCAGAC---------ACACGA-GAT--AT--ATCTG--GAAAAAAAA---TACTA-ATCG-AACCCC----ACTCTTTGT-TTTTTTTTCAATTT-TC-TTT-TTATCTGTT--TATG--ATATTGAT---AATTTCTCCTTTCTTT--------------------CTCTCTTAAAATTTTCA---------CCC-CCTCTCT-----TT-CTACATT-----------------TTA--A--AGCAATGAAAAAAAAA--TATCGAC-AAA--CTTGCTAAATAT-ATCCGT----ATAT-T--CC----------AAAAC-GATG-CCT-CGTGCCC--
gi|7 : gagtgcCCCACCCGTAAGTTTATGTC-AAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATA---------AACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAAGTAC--------G-----TAT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTAacccgtaagtttatgtcaagcggcatcgattacacaaaattttcatgtacgttttatgaataaacagtggaaaaggtatacggagtgcatttttattgataagtacgtatactcgtaatggtattttgtcagacttggaacttttaaaaatccatatgtatttttttgcattattatttaccca
gi|8 : gagtgcatggagagaaagagaagaaaataaacgaagatatctcgtgtttcgcatagtggctttattgccaatatacacggatccacaaagacccaacatcaaagggaacccgtgcactccagacacacgagatatatctggaaaaaaaatactaatcgaaccccactctttgtttttttttcaattttctttttatctgtttatgatattgataatttctcctttctttctctcttaaaattttcaccccctctctttctacattttaaagcaatgaaaaaaaaatatcgacaaacttgctaaatatatccgtatattccaaaacgatgcctcgtgCCACCCGTAAGTTTATGTC-AAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATA---------AACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAAGTAC--------G-----TAT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTAAAAATCCATATGTATTTTTTT-GCATTATTATTTACCCACTTCAT---GTGCTGT---AA------CCG-ACTTTTAT-TTTTTTCGATAAGCTCGGAATTC-----ACGAAAT----AAACTTACAATATCATGT-A-----CCGACTATA--ATAATCGTTT-------------------------GAATG-ATCCTTCT----CTG-GGCG-GT-AC----CG---A----------GA------------C-GAGGCCCGGGTGGAAT-----TAGATCTAAGAC-TCGTCTG---GC-ATT---CGAGCGAAACCCTGATTT--TCGCCGCTTCATC--GAAGAGATATG--AATAAAGT-CTGTAAC-CAA-G-TATAAAA--A-AA----GTCAAG-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ACACaaaatccatatgtatttttttgcattattatttaccca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCGCTGAATAGTCAATAAGTACTATACAAGATACAATTCAATTCGTTATATGATCAAATTTTTTCCCAATAAAAATAGGGCAATAAGAAGGTGTAACCAACTAGTTAAGCATCCCGTGTTGGCACGTCGGCCTTGATAAATAACCAGGTGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 11 1111111 1111 111 111 11111111111 111111 11 2222222 111 111 11 22222 33333333 22222222 55555555555555555 222222 11 11111 11 333 11 1 3333 1 11 3333333333 111 2222222222 22222 1 6666666666666666666666666666666666666666666 1111 11111 111 1 22222 1111 1111 2222222 11 2222222222222222222 222222222222 1 1111 11111 2 11111 1111 1111111 222222222222 2222222222 2222222222 1111 1111 11 11 111 1 5555555555 11 1 11 1 1 1111 555555555555555555 1 1 222222 44444444444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 999999999999999999999999999999999999999999999999999999999 66666666 44444444444 1 1 1 5555555555555555 22222222 1 11 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 2 3333 111 333333333333 1 111 2222 11 333 1 1 2222 2222 111
lowQualScore : 1 33 0 33 8888888 7777 8 8 8 444 8 5 3 8 8 000 22222222222 5 444444 8 11 0 8 6666666 444 8 8 8 444 8 11 8 8 5 33333 88888888 8 22222222 0 44444444444444444 000000 99 6 99 55 8 8 55555 0 0 8 88 999 88 3 0000 0 22 55 55 5555555555 777 0000000000 66666 55 0 0 9999999999999999999999999999999999999999999 6666 1 66666 6 6 99 4 3 111 1 99 6 9 5 44444 77 77 0 1 5 5 2222 2222 6666666 5 5 33 1 8 1 0 77 5 5555555555555555555 444444444444 5 77 77 99 3 777 1 8 5 0 7777 77777 0 1 77777 7777 88 22 1111111 1 222 888888888888 77 1 555 5 4444444444 5 5 5 1 8888 6666666666 2222 0 3333 33 3 0 77 444 0 0 0 0000000000 8 8 8 11 0 33 0 0 7777 555555555555555555 3 7 0 000000 3 3 3 1 66666666666 99 2 7 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 6 1111111 1 6 2 444444444444444444444444444444444444444444444444444444444 3 99 66 00000000 3 88888888888 0 3 0 0 2 1 9999999999999999 3 88888888 0 33 2 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 2222 777 1 999999999999 0 777 1 5555 2 11 000 0 88 5 8 0 3 0 88 1 1 4444 8 7777 8 0 6 2222 88 444 8 8
lowQualScore : . .. . .. ....... .... . . . ... . . . . . ... ........... . ...... . .. . . ....... ... . . . ... . .. . . . ..... ........ . ........ . ................. ...... .. . .. .. . . ..... . . . .. ... .. . .... . .. .. .. .......... ... .......... ..... .. . . ........................................... .... . ..... . . .. . . ... . .. . . . ..... .. .. . . . . .... .... ....... . . .. . . . . .. . ................... ............ . .. .. .. . ... . . . . .... ..... . . ..... .... .. .. ....... . ... ............ .. . ... . .......... . . . . .... .......... .... . .... .. . . .. ... . . . .......... . . . .. . .. . . .... .................. . . . ...... . . . . ........... .. . . . . ............................................................................................. . . ....... . . . ......................................................... . .. .. ........ . ........... . . . . . . ................ . ........ . .. . . ........................................................................................... . . .... ... . ............ . ... . .... . .. ... . .. . . . . . .. . . .... . .... . . . .... .. ... . .
lowQualScore : 0 88 0 22 0000000 6666 0 0 0 000 0 0 2 0 0 000 00000000000 6 888888 0 00 8 0 0000000 000 0 0 0 000 0 88 0 0 0 44444 44444444 0 66666666 8 22222222222222222 888888 22 7 00 88 0 0 00000 8 8 0 33 000 33 3 2222 0 55 88 88 2222222222 555 2222222222 22222 00 0 2 3333333333333333333333333333333333333333333 0000 0 00000 7 7 22 0 2 777 5 22 7 2 7 33333 99 99 7 0 7 7 1111 1111 4444444 7 7 66 7 4 7 4 99 7 7777777777777777777 666666666666 7 99 99 22 6 000 4 0 6 8 0000 66666 0 4 66666 4444 88 22 4444444 4 888 333333333333 99 7 111 7 1111111111 7 7 7 4 0000 9999999999 2222 8 2222 88 2 8 22 000 8 8 8 4444444444 0 0 0 00 0 88 0 0 2222 888888888888888888 3 3 0 888888 2 2 2 2 22222222222 22 5 5 0 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 7 7777777 0 7 5 999999999999999999999999999999999999999999999999999999999 8 00 44 22222222 2 88888888888 0 2 0 0 5 0 8888888888888888 2 00000000 0 88 5 8 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 2222 555 0 000000000000 0 555 0 0000 5 00 888 6 88 0 0 6 6 6 88 0 4 4444 0 0000 0 6 4 2222 88 000 0 0
consensus : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTATT-CTTAACCGATAAACGATA-TATATTGA-CA--AAAAT-AA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATGA-T-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---CGT---ATA--T--TAT--A---ACTG--CA-TGGGCA--GTGTTTTAA-CAA-CA---AGGGAGAGAGTG-CAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TA-T-A---CCGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAGA---A-G-AGAA-AA--ANATAAAC---GAAGAG-AT-CT-CGTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----CGGA-----ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAG-------ACATACACGA-GAT--A--TATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTTTATT--TTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGATAT-TAATA--ACTCTCTTAAAATTTTCGCACCC-CCCCCCT-----CTCTCTCTCT-CTACATT-GAA-TGAA--T-AA-AATTA-T--AAGCAAT--G-AAAAAAAATATCG-AC-ATA--CTTGCTAAATATAAGTCGC---GATATATACCG--ATA--CAAAAAC-GAT-ACTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATT--CCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCA--TCGAAGAGATATG-TAACCAAG-TATATAACAC-AAANTAAAAAAGT-A-AACATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
Reference ( family-34 ) : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTATT-CTTAACCGATAAACGATA-TATATTGA-CA--AAAAT-AA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATGA-T-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---CGT---ATA--T--TAT--A---ACTG--CA-TGGGCA--GTGTTTTAA-CAA-CA---AGGGAGAGAGTG-CAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TA-T-A---CCGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAGA---A-G-AGAA-AA--ATATAAAC---GAAGAG-AT-CTGCGTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----CGGA-----ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAG-------ACATACACGA-GAT--A--TATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTTTGTT--TTG-TTTTTTGAT-TTG--AATTTCCCCTTTNTCTGTTTATGATAT-TAATA--ACTCTCTTAAAATTTTCGCACCC-CCCCCCT-----CTCTCTCTCT-CTACATT-GAA-TGAA--T-AA-AATTA-T--AAGCAAT--G-AAAAAAAATATCG-AC-ATA--CTTGCTAAATATAANTCGC---GATATATACCG--ATA--CAAAAAC-GAT-ACTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAANATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTGGA-----------------------ACTTTTA-------------G-------------TTTTTTN-GCATTATTATT--CCC---TCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-GACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCA--TCGAAGAGATATG-TAACCAAG-TATATAACAC-AAANTAAAAAAGT-A-AACATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
gi|1 : CCGGAAGT--AAAT-ATAACATTTT---G-T-TTATTTGTAATGC-ATTT-TT-AAAAAAAAT-AAATACCAACCGTAAAAATTA-T-T-TCAATTAT--CTTAACCGATAAACGAT--CATATTGA-CA--AAA-T-AA-------CGTTTT---CCGT-AA-AT-AA---ACCACCTTT-GTGA-T-ACCACCACGAAAACGA--------GCTTCAAAA-ATAAAC-GC-C-GGA-GTG---AA----ACAG-T--CAT--ACCGACTC--CA-TGTGCAAGGTGTTTTAAATAA-CATACAGTG-GAGAGTG-CAATGCCTTGAC---GCTT--GCCG-TCTGATAT---TC-GCAT-CGATAAAACCAGTCT-TATTCATCGGTCA---TA-T-A---TCGATACC--ACAACGGCG-GAACAGACATTCT----CAA-G---AAGAATAGC------ATCGGTAGATG--ATAAAGA---A-GTAGCG-AA--ATATAA-C---GAAGAG-AT-CTGCGTGT-TCCGCCG-GT--AGT--GAGTTTAAT-GCCAAT-AC----ACA----CGGA-----ATC-CAA-CAAGACT-CCAACAACAAAAGGGAA--CC-GTGCGCATCA----CT------CCAGACATTTCACATACACGA-GAT--AACAATCTA--AAAGGAGAAATTTACAA-ATC--AACCCC----ATTCTTTAT-ATCTATTT-GTTTATC-TGTATTTTATT--TCC-TTTTTTAAT-TTG--AATTTCCCATTTATCTGTTTATGA-ATATAATA--AC---CTTAAAATTTTCGCACCCACCCACCT-----CTCTCTCTCTCCTACATT-GAA-TGAA--TAAA-AATTA-TACAAGCAATAAA-AAAAAAAATATCG-ACAATAATCTTGCTAAATA-AATTCGC---GATATATACCGATATA--CAAAAAC-GATAACTT-CGTGCCT--GTC-TAA--CCCTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAA-GA-GG--G---GGGTGTGTAAGAT--TA----------CCCCCCCCGGTAAGTTTATGTCCAAGCGGCATCGATTACACAATA-TTTCGTCTAAG-TTTA-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACTCCG-------T-ATAGCTTTTT-GTCAGACTTTGA-----------------------ACTTGTA-------------G-------------CTTTCTA-GCAT---------------TCATGTGCTGT---AAAGTAGACCG-ATTTTTAT-TTTTT-CAACAAGCTCGGAAGTC-----A-----T----AAACTTACAATATCATGTATATTCCGAC-ATA--ATAATCGTTTGATATCTT-----------ATCAATAAATCCACCCTTCTTGTGCCG-G-CACGT-GT----CGTGTAAAAAGGGTTCGA------------C-GAGTCCCGGGTGGAATATACTA---GAATTAAGAC-C-----G---GCAATTTCCCGAGCGAAACCCAGATTT--G-GCCGCTTCA--TTGAAG---TCTG-TAACCAAG-TATA-AACAC-AAACCAAAAA--T-A-AACAT-TCAAG-TTTTCTTAAGCCTCTT-TAATGGAC---TGATGTGATGAA-GTATGGT-CCAC
gi|10 : ATGC-ATTT-TT-AATAA---T-AAATTCCAACCGTAAAA-TTA-T-T-TCAATTATT-------------------------TGA-CA--AAAAT-AA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATGA-T-A-C----CGAGAACGA-G------GCTTCAAAA-ATAA-C-AC-C-AGATGTG----AC---ATA--T--TAT--A---ACTG--CA-TAGGCA--GTG-TTTAA-CAA-CA---A-GGAGATAGTG-C
gi|11 : CTGTTTATGATAT-TAATA--ACTCTCTTAAATTTTTCGCACCC-CCCCCCCCCTCACTCTCTCTCT-CTACATT-GAACTGAA--T-AATAATTT-A--AAGCAAT--G-AAAAAAA
gi|12 : CGCTTCA--TTGAAG---TATG-TAACCAAG-TATA--ACAC-AAACAAAAAAAGT-AGAACATGTCAAG-TTTTCTTAAGC-TCAT-TAATGGAC-TTTGAT---ATGAA-GAATGGT-ACA
gi|13 : TGT-TCTA-TG-GC---GT--GTGTGTATT-GCCAAT-AC----ACAGTGTCGTACGTAGATT-CAC-GTAGAC--CCTAT-TCATAGGGAAA---C-GCG-----CA----CC------TTAT-------GTATACA--A-CAT--A--TAT
gi|14 : AATA--ACTCTCTTAAAAATTTCGCACCC-TCCCA---------CTCTCTCT-CTACATT-GAA-TGAA--T-AA-
gi|15 : TTG-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-At
gi|16 : --CA-TGGACA--GTTTTTTAA-CAA-CA---A-GGAGAGAGTG-CAaggattgagtgcatttatttat
gi|2 : accacccATAC---AC-GCA--CGATAGAACCGATAT--ATA-AT--GTCAAGATA-T-AACTTCGGTACTGTACCACCCCATGGACAG---TTTTACAACAACG---GAGAAGTGC------AT-G-----TG--AGAGAGA---A-A-AGAAGAA--AAATAAAC---GAAGATTAT-CT-CGATT-TTCGC---AT--AGT--GGGCTTATT-GC-AAT-AT----ACA----CCGG-----ATCACAC-AGAACT--CCAAC-TCAAAGGAGAA--CCCGTGC-----A----CT------CCAG-------ACAC-TACGA-GAT--A--TATCTGGAAAAAAAAAAA---ACTATATCGAAACCCCTCGTATTTTTCTT-TTCAATTTCTTTTATCATGT-TTATA-----TGATATATTGAT------AATTTCTCCTTTTT----------------------CTCTCTTAAAATTT---CA-----CCCCCT-----CTCTTTC------ACA-T-GAA-TGAACTT-AA-AATTT-A--AAGCAAT--G-AAAAAAAATATCGAAC-ATA--CTTGCTAAATATA--TCGT---CATAT---CC----------AAAAC-GAT-GCCTACGTGCCCTGGTG-TAA--CTTTTT-CCGTTAGAAATAAA-TAAAGTCATTTCTTATCAGATAAATCAATGATGGGTGA--GGGTG-GTAAGATAAAA------------ACACCTCGTAAGTTTATGT--AAGCGGCATCGATTACACAA-ATTTTCA-GCACGTTTTATTGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACtg
gi|2 : atattAAGA-AC----------G-----T-------------------------ATTACT-CG-------TAATGGTATTTT-GTCAGACTTGGAACTTTTAAAAATCGCATATGTAAACTTTTA-------------A-------------TTTTTTTTGCATTATTATTA-CCCACTTCATG-GCTGT---A---TA-CACG-ACTTT-AT-TTTTT-CGATAAGCTCG-AATTCCACGAA-----A----AAACT-ACAATATCAT-T-TA---CGAC-TAA--ATAAA---------TCTT-----------G--AA----T-TGTCCTTCT----CGG-G-CG-GGGAC----CG---A----------GA------------C-GAG-CCCGGGTGGAAT----TA---GATCTAAGACTC-----GTCTGC-ATT---CGAGCGAAACCCTGATTTTCGCGCCGCATCA--TCGAAGAGATATGATAAC--AG-TCTATAAC-C-AAGTTATAAAA---A-A----GTCGAA-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ggagctgcattttttgatacaagaacgtattactcgtaatggtattttgtcagacttggaacttttaaaaatcgcatatgtaaacttttaattttttttgcattattattacccacttcatggctgtatacacgactttattttttcgataagctcgaattccacgaaaaaactacaatatcatttacgactaaataaatcttgaattgtccttctcgggcggggaccgagacgagcccgggtggaattagatctaagactcgtctgcattcgagcgaaaccctgattttcgcgccgcatcatcgaagagatatgataacagtctataaccaagttataaaaaagtcgaattttcttcagcttcttcttggactttgatatgaagtatggtaacc
gi|3 : atattatacacgcacgatagaaccgatatataatgtcaagatataacttcggtactgtaccaccccatggacagttttacaacaacggagaagtgcatgtgagagagaaaagaagaaaaataaacgaagattatctcgattttcgcatagtgggcttattgcaatatacaccggatcacacagaactccaactcaaaggagaacccgtgcactccagacactacgagatatatctggaaaaaaaaaaaactatatcgaaacccctcgtatttttcttttcaatttcttttatcatgtttatatgatatattgataatttctcctttttctctcttaaaatttcaccccctctctttcacatgaatgaacttaaaatttaaagcaatgaaaaaaaatatcgaacatacttgctaaatatatcgtcatatccaaaacgatgcctacgtgccctggtgtaactttttccgttagaaataaataaagtcatttcttatcagataaatcaatgatgggtgagggtggtaagataaaaacacctcgtaagtttatgtaagcggcatcgattacacaaattttcagcacgttttattgaataaacagtggaaaaggtatacggagctgcattttttgatacCCGGAATTCTAAATTATA-CATTTTT--GGT-TTAATT-TTATGC-AATT-TT-TAAAA---T-AAATACGCACCGTAAAA-TTA-TATATTAATTATTTCTTAACCGATAAACGATACTATTTTGATCA--AAAATTAA-------CGTTTT---CTGTCAA-AT-AA---AC-ACTTTA-ATGAAT-ACC-----GAGAACGA-G------GCTTCCAAA-ATAAGC-AC-CTGGATGTG---CGT---GTA--TGTTAT--A---ACTGTGCAGTCGGCAT-GT-TTTTAA-CAAACA---AGGGAG-GAGTGGCAATG--TTGACTTGGCTT--GCCG-TCTGATAT----C-GCATACGATAATAACAGTCTATGGT--TTAGTCG---TA-TTA---CACATATC--A-GACGGCA-GGCCAG----TCT---------------AATAG------------TGCATG--A-AGTGA---AAG-AGAA-GA--AAAT--------------------TGTGT-TCCGC---GT--AGT--GGGTTTAAT-GCCAAT-AC----ACA----CGGA------TC-CAC-AAAGAC--CCAACATCAAAGGGAAA--CC-GCG-----CA----CT------CCAG-------AC--ACACGA-GAT--A--TATCTG--AAAG--AAAATTTAATA-ATCGAA--------------------CCTATTT-GTTTGTT-TG--TTTTGTTTGTTG-TTTTTTAGT-TTG--AATTTTCTTTTTATCTGTTCATGATAT-TAATA--ACTCTCTTAAAATGTTCGCACCC-CC----------CTCTCTCTCT-CTACATT-GAA-TGAA--T-AA----TA-T--AAGacc
gi|3 : cttAATATAAGTCGC---GATATATATCC--GTAGTCAAAAAC-GAT-ACTT-CGTACCT--GTC-TAA--CCTTTTTCCG-TAGGA--AA----------------------TAAA-CAATGA-GG--GACAGGGTGTGTAAGATAACA----------CCCCACCCCGTAGGTCT---------------CGATTACAAAATATTTTCGTGTAAGTTTTA-TGAATAATTCAGAATAAA------------------AGTG----------GAAAAGGT----------A-----TACGGAATGCATTTTTATTTATAAGGAT-ACT-CG-------TAATGGTTTTTT-GTCAGACTTTGA-----------------------tcgcgatatatatccgtagtcaaaaacgatacttcgtacctgtctaacctttttccgtaggaaataaacaatgagggacagggtgtgtaagataacaccccaccccgtaggtctcgattacaaaatattttcgtgtaagttttatgaataattcagaataaaagtggaaaaggtatacggaatgcatttttatttataaggatactcgtaatggttttttgtcagactttga
gi|4 : cttccggaattctaaattatacatttttggtttaattttatgcaatttttaaaataaatacgcaccgtaaaattatatattaattatttcttaaccgataaacgatactattttgatcaaaaattaacgttttctgtcaaataaacactttaatgaataccgagaacgaggcttccaaaataagcacctggatgtgcgtgtatgttataactgtgcagtcggcatgtttttaacaaacaagggaggagtggcaatgttgacttggcttgccgtctgatatcgcatacgataataacagtctatggtttagtcgtattacacatatcagacggcaggccagtctaatagtgcatgaagtgaaagagaagaaaattgtgttccgcgtagtgggtttaatgccaatacacacggatccacaaagacccaacatcaaagggaaaccgcgcactccagacacacgagatatatctgaaagaaaatttaataatcgaacctatttgtttgtttgttttgtttgttgttttttagtttgaattttctttttatctgttcatgatattaataactctcttaaaatgttcgcacccccctctctctctctacattgaatgaat-GG--GA--GGGTGTGTA-GATAATATCCCCCCCCCCCCCCCCCCG-GAGTTTATGT-CAAGCG-CATCGATTACACAATATTTTCGTGTAAGTTTTA-TAAATAA----------C------------------AGTG----------GAAAG-GTTACAGAGATGGCATTTT-------------------------AT-ATT-TGATAAGATTAATGGTTTTTTTGTAAGACTTTGA-----------------------ACTTGTA-------------G-------------TTTT--A-GCATT-TCATT----------ACGTGCTGTTTAAAC-TA-ACCGGATTCTTATATTTGT-CGATAAGCTCGGAAGTC-----A-----TGAAAAAACTTACATTATCAT-T-TA---CGAC-ATATAATAATCGTCT----TGTTCATTATAAAAAA--AA-AAAT-GACCCTTCT----CTGTG-CG-GC-ACGTGTCG---G----------GAAAAGGGTAGCGACAGAG-CCCGGGTGGAATAT--TACTAGAATTAAGAC-C-----G----C-ATT---CGAGCGAAACCCAGATTT--G-G-CGCTTCATTTTGAAG---TCTT-TAACCAAGTTATACAACACAAAAGTAAAAAAGTAA-AACATGTCAAGTTTTTCTTAAG-CTCTT-TAATGGACTTTTGAT---ATGAAGGTATGGTAACAC
gi|5 : gcagGGAAGT--AGAT-ACA-CATTTTT--G-TATCATTT---ATGC-ATTT-TT-AAAAA---TTAAATAC-AACGATAAAA-TTAGT-T-TCAATTATT-CTTAACCGATAA-CGATA-TATATTGA-CATAAAAAT-AA-------CGTTTT---CCGT-AA-ATGAA---AT-ACCTTT---GA-TTACC----TAGTAACGATG------GCTTCAAAA-TCAA-CAGC-CAGGATGTGA--CAT----TA--T--TAC--C---ACTG--CA-TGGGCA--GTGTTTTAA-CAA-CA---AGGAAGAGAGTG-GCATG--TTGACTG-GGTTAAGCCGTTTTGATACTCTGCTACTTACGATAAA--CAG--T-TGTT-AGC-GTAA---TACT-A---CAAATATT--A------TA-GCACAGGCAGTCT-----AA-G---AGTGAC--C------AT-GG-AG-TG--A-A-AGC---A-G-AGAA-AATTATATAAAC---GACGAG-AT-CT-CGTGT-TCCCATG-GTTAAGTTCGGTTTTAATAGCCAAT-AC----ACA----CGG------ATC-CAC-AAAGAC--CC-GCATTCAAAGGCAC--CC-GCGC----CA----CT------CCAG-------ACA---ACGACGATTAA--TATCTG--AAAG-AAAAATTTACAA-ATCGAAACCCC----ATTCTTAATATTCTATTT-GTTTGTT-TTT-TCTTGTT--TTG-TTTTT--A--TTG--AATTTTCTTTTTA-CT-TTTATTATATATAATAAGACATTCATAAAATTTCC---CCC-CCCCCCT-----CTCTCTCTCT-CTACATTGGAA-TG-A--T-AACAATGATT--AAACAAT--G-AAAAA------------ATA--C-TGCTAAATATAAGTCGCGGAGATATAT-CTG--ATA--TCAAAACAGAT-ACTT-C-TGCCT--GTCATAACCCCTTTT-CCG-TAG----AAGTTAAA------------CAGAacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttccacatggcatagtcagatagtacttcaagtacaattcaattcttattggaccaaattaagtgcccccaaagggcaatatgaaggtgtacaatggtataacatcccgttgttgcacgtgctagaggacaattgtgaataacacaggtgt
gi|6 : tccaGAGCC--AAAT-AT--CATTTTTTGG-T-TTATTT-TA-TGCCATTTGTTGAAAAA---T-AAATACCAATT----AA-TTG-T-C-TTAATTATT-CT-------TAAACGATA-TAT-TTGA-CA--AAAAT-AAATAGTGTAGTTGTGCACC-T-AATAT-TATCCAC-ACTTTTCATGA-T-AAC----TGAGAACGGTGGAGGCTGTTGCAAAATATAA-G-ACAC-GGATGTGGAACGTTCCATATTT--TATTCA---ACTG--TA-CG
gi|6 : gaaCATGCT----CAA-AGAAAAGAAAAGTGCACATAT-GG-AGGTGTGA-AGAGAGATA-G-AAAA-AA--ATAAAAACCGTAAGGAG-ATGCGGGGTGTATCC-CTGCGT--AGT--GGCTTT-TT-GCCAATCACATCTACA----CGG------ATC-CTCAAAAGACAACCAAACTTAAA-GGGAACTCT-GCGC----CAACAGTTTTCGTACTAA-------CCATTCATGA-GAT--A--TATCTG--AAAGttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaacatgctcaaagaaaagaaaagtgcacatatggaggtgtgaagagagatagaaaaaaataaaaaccgtaaggagatgcggggtgtatccctgcgtagtggctttttgccaatcacatctacacggatcctcaaaagacaaccaaacttaaagggaactctgcgccaacagttttcgtactaaccattcatgagatatatctgaaag
gi|7 : gaagagccaaatatcattttttggtttattttatgccatttgttgaaaaataaataccaattaattgtcttaattattcttaaacgatatatttgacaaaaataaatagtgtagttgtgcacctaatattatccacacttttcatgataactgagaacggtggaggctgttgcaaaatataagacacggatgtggaacgttccatattttattcaactgtacgttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaaATG--G-AGAGA---AAG-AGAA-GA--AAATAAAC---GAAGAT-AT-CT-CGTGT-TTCGC---AT--AGT--GGCTTTATT-GCCAAT-AT----ACA----CGGA------TC-CAC-AAAGAC--CCAACATCAAAGGGAAC--CC-GTG-----CA----CT------CCAG-------AC--ACACGA-GAT--A--TATCTG--GAAAAAAAA---TACTA-ATCG-AACCCC----ACTCTTTGT-TTTTTTTTCAATTTTC---T-TTTTA-T--CTG--TTTATGATATTGATAATTTCTCCTTTCTTT--------------------CTCTCTTAAAATTTT--CACCC-C-------------CTCTCTTT-CTACATT------------------TTA----AAGCAAT--GAAAAAAAAATATCG-AC-AAA--CTTGCTAAATATA--TC-C---G-TATATTCC----------AAAAC-GAT-GCCT-CGTGCCC--
gi|7 : gagtgcCCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTAAAAATCCATATGTA-------------TTTTTTT-GCATTATTATT--TAC---CCAacccgtaagtttatgtcaagcggcatcgattacacaaaattttcatgtacgttttatgaataaacagtggaaaaggtatacggagtgcatttttattgataagtacgtatactcgtaatggtattttgtcagacttggaacttttaaaaatccatatgtatttttttgcattattatttaccca
gi|8 : gagtgcatggagagaaagagaagaaaataaacgaagatatctcgtgtttcgcatagtggctttattgccaatatacacggatccacaaagacccaacatcaaagggaacccgtgcactccagacacacgagatatatctggaaaaaaaatactaatcgaaccccactctttgtttttttttcaattttctttttatctgtttatgatattgataatttctcctttctttctctcttaaaattttcaccccctctctttctacattttaaagcaatgaaaaaaaaatatcgacaaacttgctaaatatatccgtatattccaaaacgatgcctcgtgCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTA-------------AAAATCCATATGTATTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA------CCG-ACTTTTAT-TTTTTTCGATAAGCTCGGAATTC-----ACGAAAT----AAACTTACAATATCATGT-AC---CGACTATA--ATAATCGTTT-------------------------GAAT-GATCCTTCT----CTG-GGCG-GT-AC----CG---A----------GA------------C-GAGGCCCGGGTGGAAT----TA---GATCTAAGAC-TCGTCTG---GC-ATT---CGAGCGAAACCCTGATTT--TCGCCGCTTCA--TCGAAGAGATATG--AATAAAG-TCTGTAAC-C--AAGTATAAAA---A-AA---GTCAAG-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCGCTGAATAGTCAATAAGTACTATACAAGATACAATTCAATTCGTTATATGATCAAATTTTTTCCCAATAAAAATAGGGCAATAAGAAGGTGTAACCAACTAGTTAAGCATCCCGTGTTGGCACGTCGGCCTTGATAAATAACCAGGTGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 11 1111111 1111 111 111 111111 11 2222222 111 111 11 222222 33333333 22222222 6666666666666666 222222 11 11 11111 11 333 11 1 3333 1 11 3333333333 111 222222222 22222 1 6666666666666666666666666666666666666666666 1111 11111 111 111 22222 1111 1111 222222 11 2222222222222222222 222222222222 1 1111 11111 2 11 1111111 2222222222222222 2222222222 2222222222 1111 1111 11 11 111 1 5555555555 11 1 11 1 1 1111 555555555555555555 1 1 222222 44444444444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 999999999999999999999999999999999999999999999999999999999 3333333 44444444444 1 1 1 5555555555555555 22222222 1 11 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 2 3333 111 333333333333 1 111 2222 11 333 1 1 22222222222 2222 111
lowQualScore : 1 33 0 33 8888888 7777 8 8 8 444 8 5 3 8 8 000 8 0 7777777 5 444444 8 11 88 6666666 444 8 8 8 444 8 11 8 8 222222 88888888 8 22222222 0 3333333333333333 000000 11 6 11 88 999 55555 0 0 8 88 999 88 3 0000 0 22 55 55 5555555555 777 000000000 66666 55 0 0 9999999999999999999999999999999999999999999 6666 1 33333 6 6 6 99 1 66 111 1 99 2 6 111 5 44444 77 77 0 1 5 5 2222 2222 888888 5 5 33 1 8 1 0 77 5 5555555555555555555 444444444444 5 77 77 99 3 777 1 8 5 0 7777 77777 0 1 88 8 8 11 88 22 1111111 1 7777777777777777 77 1 555 5 4444444444 5 5 5 1 8888 6666666666 2222 0 3333 33 3 0 55 444 0 0 0 0000000000 8 8 8 11 0 33 0 0 7777 555555555555555555 3 7 0 000000 3 3 3 1 66666666666 99 2 7 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 6 1111111 1 6 1 222222222222222222222222222222222222222222222222222222222 999 0 5 8888888 3 88888888888 0 3 0 0 2 1 9999999999999999 3 88888888 0 33 2 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0 2222 777 1 999999999999 0 777 1 5555 11 000 0 88 5 88 3 0 0 99 1 11111111111 8 0 6 2222 88 444 8 8
lowQualScore : . .. . .. ....... .... . . . ... . . . . . ... . . ....... . ...... . .. .. ....... ... . . . ... . .. . . ...... ........ . ........ . ................ ...... .. . .. .. ... ..... . . . .. ... .. . .... . .. .. .. .......... ... ......... ..... .. . . ........................................... .... . ..... . . . .. . .. ... . .. . . ... . ..... .. .. . . . . .... .... ...... . . .. . . . . .. . ................... ............ . .. .. .. . ... . . . . .... ..... . . .. . . .. .. .. ....... . ................ .. . ... . .......... . . . . .... .......... .... . .... .. . . .. ... . . . .......... . . . .. . .. . . .... .................. . . . ...... . . . . ........... .. . . . . ............................................................................................. . . ....... . . . ......................................................... ... . . ....... . ........... . . . . . . ................ . ........ . .. . . ........................................................................................... . . .... ... . ............ . ... . .... .. ... . .. . .. . . . .. . ........... . . . .... .. ... . .
lowQualScore : 0 88 0 22 0000000 6666 0 0 0 000 0 0 2 0 0 000 0 8 4444444 6 888888 0 00 88 0000000 000 0 0 0 000 0 88 0 0 000000 44444444 0 66666666 8 2222222222222222 888888 00 7 00 88 222 00000 8 8 0 33 000 33 3 2222 0 55 88 88 2222222222 555 222222222 22222 00 0 2 3333333333333333333333333333333333333333333 0000 0 33333 7 7 7 22 0 77 777 5 22 5 7 777 7 33333 99 99 7 0 7 7 1111 1111 444444 7 7 66 7 4 7 4 99 7 7777777777777777777 666666666666 7 99 99 22 6 000 4 0 6 8 0000 66666 0 4 88 0 0 22 88 22 4444444 4 5555555555555555 99 7 111 7 1111111111 7 7 7 4 0000 9999999999 2222 8 2222 88 2 8 66 000 8 8 8 4444444444 0 0 0 00 0 88 0 0 2222 888888888888888888 3 3 0 888888 2 2 2 2 22222222222 22 5 8 0 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 7 7777777 0 7 0 333333333333333333333333333333333333333333333333333333333 888 8 6 1111111 2 88888888888 0 2 0 0 5 0 8888888888888888 2 00000000 0 88 5 8 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 2222 555 0 000000000000 0 555 0 0000 00 888 6 88 0 66 6 6 8 00 4 44444444444 0 6 4 2222 88 000 0 0
consensus : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---C--GT---ATA--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TACTA---CCGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A---A-G-AGAA-AA--ANATAAAC---GAAGAG-ATCT-C---GTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----CGGA-----ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAG-------ACATACACGA-GAT--A--TATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGATAT-TAATA--ACTCTCTTAAAATTTTCGCACCC-CCCCCCT-----CTCTCTCTCT-CTACATT-GAA-TGAA--T-AA-AATTA-T--AAGCAAT--G-AAAAAAAATATCG-AC-ATA--CTTGCTAAATATAAGTCGC---GATATATACCG--ATA--CAAAAAC-GAT-ACTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCATC--GAAGAGATATG-TAACCAAGT-ATATAACACAAAN-TAAAAAAGTA-AA-CATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
Reference ( family-34 ) : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---C--GT---ATA--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TA-TA---CCGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A---A-G-AGAA-AA--ANATAAAC---GAAGAG-ATCT-C---GTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----CGGA-----ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAG-------ACATACACGA-GAT--A--TATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGATAT-TAATA--ACTCTCTTAAAATTTTCGCACCC-CCCCCCT-----CTCTCTCTCT-CTACATT-GAA-TGAA--T-AA-AATTA-T--AAGCAAT--G-AAAAAAAATATCG-AC-ATA--CTTGCTAAATATAAGTCGC---GATATATACCG--ATA--CAAAAAC-GAT-ACTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATT--CCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCATC--GAAGAGATATG-TAACCAAGT-ATATAACACAAAN-TAAAAAAGTA-AA-CATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
gi|1 : CCGGAAGT--AAAT-ATAACATTTT---G-T-TTATTTGTAATGC-ATTT-TT-AAAAAAAAT-AAATACCAACCGTAAAAATTA-T-T-TCAATTA-T-CTTAACCGATAAACGAT--CATATTGA-CA--AAA--TAA-------CGTTTT---CCGT-AA-AT-AA---ACCACCTTT-GTG-AT-ACCACCACGAAAACGA--------GCTTCAAAA-ATAAAC-GC-C-GGA-GTG---A--A----ACAG-TCAT--ACCGAC--TCCA-TGTGCAAGGTG-TTTTAAAT-AACATACAGTG-GAGAGT-GCAATGCCTTGAC---GCTT--GCCG-TCTGATAT---TC-GCAT-CGATAAAACCAGTCT-TATTCATCGGTCA---TA-TA---TCGATACC--ACAACGGCG-GAACAGACATTCT----CAA-G---AAGAATAGC------ATCGGTAGATG--ATAAAG-A---A-GTAGCG-AA--ATAT-AAC---GAAGAG-ATCTGC---GTGT-TCCGCCG-GT--AGT--GAGTTTAAT-GCCAAT-AC----ACA----CGGA-----ATC-CAA-CAAGACT-CCAACAACAAAAGGGAA--CC-GTGCGCATCA----CT------CCAGACATTTCACATACACGA-GAT--AACAATCTA--AAAGGAGAAATTTACAA-ATC--AACCCC----ATTCTTTAT-ATCTATTT-GTTTATC-TGTATTT-TATTTCC-TTTTTTAAT-TTG--AATTTCCCATTTATCTGTTTATGA-ATATAATA--AC---CTTAAAATTTTCGCACCCACCCACCT-----CTCTCTCTCTCCTACATT-GAA-TGAA--TAAA-AATTA-TACAAGCAATAAA-AAAAAAAATATCG-ACAATAATCTTGCTAAATA-AATTCGC---GATATATACCGATATA--CAAAAAC-GATAACTT-CGTGCCT--GTC-TAA--CCCTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAA-GA-GG--G---GGGTGTGTAAGAT--TA----------CCCCCCCCGGTAAGTTTATGTCCAAGCGGCATCGATTACACAATA-TTTCGTCTAAG-TTTA-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACTCCG-------T-ATAGCTTTTT-GTCAGACTTTGA-----------------------ACTTGTA-------------G-------------CTTTCTA-GCA---------------TTCATGTGCTGT---AAAGTAGACCG-ATTTTTAT-TTTTT-CAACAAGCTCGGAAGTC-----A-----T----AAACTTACAATATCATGTATATTCCGAC-ATA--ATAATCGTTTGATATCTT-----------ATCAATAAATCCACCCTTCTTGTGCCG-G-CACGT-GT----CGTGTAAAAAGGGTTCGA------------C-GAGTCCCGGGTGGAATATACTA---GAATTAAGAC-C-----G---GCAATTTCCCGAGCGAAACCCAGATTT--G-GCCGCTTCATT--GAAG---TCTG-TAACCAAGT-ATA-AACACAAAC-CAAAAA--TA-AA-CAT-TCAAG-TTTTCTTAAGCCTCTT-TAATGGAC---TGATGTGATGAA-GTATGGT-CCAC
gi|10 : ATGC-ATTT-TT-AATAA---T-AAATTCCAACCGTAAAA-TTA-T-T-TCAATTA-TT------------------------TGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-A-C----CGAGAACGA-G------GCTTCAAAA-ATAA-C-AC-C-AGATGTG------AC---ATA--TTAT--A---AC--TGCA-TAGGCA--GTG--TTTAA-C-AACA---A-GGAGATAGT-GC
gi|11 : CTGTTTATGATAT-TAATA--ACTCTCTTAAATTTTTCGCACCC-CCCCCCCCCTCACTCTCTCTCT-CTACATT-GAACTGAA--T-AATAATTT-A--AAGCAAT--G-AAAAAAA
gi|12 : CGCTTCATT--GAAG---TATG-TAACCAAGT-ATA--ACACAAAC-AAAAAAAGTAGAA-CATGTCAAG-TTTTCTTAAGC-TCAT-TAATGGAC-TTTGAT---ATGAA-GAATGGT-ACA
gi|13 : TGT-TCTA-TG-GC---GT--GTGTGTATT-GCCAAT-AC----ACAGTGTCGTACGTAGATT-CAC-GTAGAC--CCTAT-TCATAGGGAAA---C-GCG-----CA----CC------TTAT-------GTATACA--A-CAT--A--TAT
gi|14 : AATA--ACTCTCTTAAAAATTTCGCACCC-TCCCA---------CTCTCTCT-CTACATT-GAA-TGAA--T-AA-
gi|15 : TTG-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-At
gi|16 : CA-TGGACA--GTT-TTTTAA-C-AACA---A-GGAGAGAGT-GCAaggattgagtgcatttatttat
gi|2 : accacccATAC---AC-GCA--CGATAGAACCGATAT--ATA-AT--GTCAAGATA-TAACTTCGGTACTGTACCACCCCATGGACAG---TTTTACAACAACG---GAGAAGTGC------AT-G-----TG--AGAGAG-A---A-A-AGAAGAA--AAATAAAC---GAAGATTATCT-C---GATT-TTCGC---AT--AGT--GGGCTTATT-GC-AAT-AT----ACA----CCGG-----ATCACAC-AGAACT--CCAAC-TCAAAGGAGAA--CCCGTGC-----A----CT------CCAG-------ACAC-TACGA-GAT--A--TATCTGGAAAAAAAAAAA---ACTATATCGAAACCCCTCGTATTTTTCTT-TTCAATTTCTTTTATCATGT-TTA-TA---TGATATATTGAT------AATTTCTCCTTT-----TT-----------------CTCTCTTAAAATTT---CA-----CCCCCT-----CTCTTTC------ACA-T-GAA-TGAACTT-AA-AATTT-A--AAGCAAT--G-AAAAAAAATATCGAAC-ATA--CTTGCTAAATATA--TCGT---CATAT---CC----------AAAAC-GAT-GCCTACGTGCCCTGGTG-TAA--CTTTTT-CCGTTAGAAATAAA-TAAAGTCATTTCTTATCAGATAAATCAATGATGGGTGA--GGGTG-GTAAGATAAAA------------ACACCTCGTAAGTTTATGT--AAGCGGCATCGATTACACAA-ATTTTCA-GCACGTTTTATTGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACtg
gi|2 : atattAAGA-AC----------G-----T-------------------------ATTACT-CG-------TAATGGTATTTT-GTCAGACTTGGAACTTTTAAAAATCGCATATGTAAACTTTTA-------------A-------------TTTTTTTTGCATTATTATTA-CCCACTTCATG-GCTGT---A---TA-CACG-ACTTT-AT-TTTTT-CGATAAGCTCG-AATTCCACGAA-----A----AAACT-ACAATATCAT-T-TA---CGAC-TAA--ATAAA---------TCTT-----------G--AA----T-TGTCCTTCT----CGG-G-CG-GGGAC----CG---A----------GA------------C-GAG-CCCGGGTGGAAT----TA---GATCTAAGACTC-----GTCTGC-ATT---CGAGCGAAACCCTGATTTTCGCGCCGCATCATC--GAAGAGATATGATAAC--AGT-CTATAAC-CAAGT-TATAAAA--A-A-----GTCGAA-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ggagctgcattttttgatacaagaacgtattactcgtaatggtattttgtcagacttggaacttttaaaaatcgcatatgtaaacttttaattttttttgcattattattacccacttcatggctgtatacacgactttattttttcgataagctcgaattccacgaaaaaactacaatatcatttacgactaaataaatcttgaattgtccttctcgggcggggaccgagacgagcccgggtggaattagatctaagactcgtctgcattcgagcgaaaccctgattttcgcgccgcatcatcgaagagatatgataacagtctataaccaagttataaaaaagtcgaattttcttcagcttcttcttggactttgatatgaagtatggtaacc
gi|3 : atattatacacgcacgatagaaccgatatataatgtcaagatataacttcggtactgtaccaccccatggacagttttacaacaacggagaagtgcatgtgagagagaaaagaagaaaaataaacgaagattatctcgattttcgcatagtgggcttattgcaatatacaccggatcacacagaactccaactcaaaggagaacccgtgcactccagacactacgagatatatctggaaaaaaaaaaaactatatcgaaacccctcgtatttttcttttcaatttcttttatcatgtttatatgatatattgataatttctcctttttctctcttaaaatttcaccccctctctttcacatgaatgaacttaaaatttaaagcaatgaaaaaaaatatcgaacatacttgctaaatatatcgtcatatccaaaacgatgcctacgtgccctggtgtaactttttccgttagaaataaataaagtcatttcttatcagataaatcaatgatgggtgagggtggtaagataaaaacacctcgtaagtttatgtaagcggcatcgattacacaaattttcagcacgttttattgaataaacagtggaaaaggtatacggagctgcattttttgatacCCGGAATTCTAAATTATA-CATTTTT--GGT-TTAATT-TTATGC-AATT-TT-TAAAA---T-AAATACGCACCGTAAAA-TTA-TATATTAATTATTTCTTAACCGATAAACGATACTATTTTGATCA--AAAATTAA-------CGTTTT---CTGTCAA-AT-AA---AC-ACTTTA-ATGAAT-A-C----CGAGAACGA-G------GCTTCCAAA-ATAAGC-AC-CTGGATGTG---CGTGT---ATG--TTAT--A---ACTGTGCAGTCGGCA---TGTTTTTAA-CAAACA---AGGGAG-GAGTGGCAATG--TTGACTTGGCTT--GCCG-TCTGATAT----C-GCATACGATAATAACAGTCTATGGT--TTAGTCG---TATTA---CACATATC--A-GACGGCA-GGCCAG----TCT---------------AATA------------GTGCATG--A-AGTGAA---A-G-AGAA-GA--AAA------------------T-T---GTGT-TCCGC---GT--AGT--GGGTTTAAT-GCCAAT-AC----ACA----CGG------ATC-CAC-AAAGAC--CCAACATCAAAGGGAAA--CC-GCG-----CA----CT------CCAG-------AC--ACACGA-GAT--A--TATCTG--AAAG--AAAATTTAATA-ATCGAA--------------------CCTATTT-GTTTGTT-TGT-TTTGTTTGTTG-TTTTTTAGT-TTG--AATTTTCTTTTTATCTGTTCATGATAT-TAATA--ACTCTCTTAAAATGTTCGCACCC-CC----------CTCTCTCTCT-CTACATT-GAA-TGAA--T-AA----TA-T--AAGacc
gi|3 : cttAATATAAGTCGC---GATATATATCC--GTAGTCAAAAAC-GAT-ACTT-CGTACCT--GTC-TAA--CCTTTTTCCG-TAGGA--AA----------------------TAAA-CAATGA-GG--GACAGGGTGTGTAAGATAACA----------CCCCACCCCGTAGGTCT---------------CGATTACAAAATATTTTCGTGTAAGTTTTA-TGAATAATTCAGAATAAA------------------AGTG----------GAAAAGGT----------A-----TACGGAATGCATTTTTATTTATAAGGAT-ACT-CG-------TAATGGTTTTTT-GTCAGACTTTGA-----------------------tcgcgatatatatccgtagtcaaaaacgatacttcgtacctgtctaacctttttccgtaggaaataaacaatgagggacagggtgtgtaagataacaccccaccccgtaggtctcgattacaaaatattttcgtgtaagttttatgaataattcagaataaaagtggaaaaggtatacggaatgcatttttatttataaggatactcgtaatggttttttgtcagactttga
gi|4 : cttccggaattctaaattatacatttttggtttaattttatgcaatttttaaaataaatacgcaccgtaaaattatatattaattatttcttaaccgataaacgatactattttgatcaaaaattaacgttttctgtcaaataaacactttaatgaataccgagaacgaggcttccaaaataagcacctggatgtgcgtgtatgttataactgtgcagtcggcatgtttttaacaaacaagggaggagtggcaatgttgacttggcttgccgtctgatatcgcatacgataataacagtctatggtttagtcgtattacacatatcagacggcaggccagtctaatagtgcatgaagtgaaagagaagaaaattgtgttccgcgtagtgggtttaatgccaatacacacggatccacaaagacccaacatcaaagggaaaccgcgcactccagacacacgagatatatctgaaagaaaatttaataatcgaacctatttgtttgtttgttttgtttgttgttttttagtttgaattttctttttatctgttcatgatattaataactctcttaaaatgttcgcacccccctctctctctctacattgaatgaat-GG--GA--GGGTGTGTA-GATAATATCCCCCCCCCCCCCCCCCCG-GAGTTTATGT-CAAGCG-CATCGATTACACAATATTTTCGTGTAAGTTTTA-TAAATAA----------C------------------AGTG----------GAAAG-GTTACAGAGATGGCATTTT-------------------------AT-ATT-TGATAAGATTAATGGTTTTTTTGTAAGACTTTGA-----------------------ACTTGTA-------------G-------------TTTTA---GCATT-TCATT----------ACGTGCTGTTTAAAC-TA-ACCGGATTCTTATATTTGT-CGATAAGCTCGGAAGTC-----A-----TGAAAAAACTTACATTATCAT-T-TA---CGAC-ATATAATAATCGTCT----TGTTCATTATAAAAAA--AA-AAAT-GACCCTTCT----CTGTG-CG-GC-ACGTGTCG---G----------GAAAAGGGTAGCGACAGAG-CCCGGGTGGAATAT--TACTAGAATTAAGAC-C-----G----C-ATT---CGAGCGAAACCCAGATTT--G-GC-GCTTCATTTTGAAG---TCTT-TAACCAAGTTATACAACACAAAAGTAAAAAAGTA-AAACATGTCAAGTTTTTCTTAAG-CTCTT-TAATGGACTTTTGAT---ATGAAGGTATGGTAACAC
gi|5 : gcagGGAAGT--AGAT-ACA-CATTTTT--G-TATCATTT---ATGC-ATTT-TT-AAAAA---TTAAATAC-AACGATAAAA-TTAGT-T-TCAATTA-TTCTTAACCGATAA-CGATA-TATATTGA-CATAAAAA-TAA-------CGTTTT---CCGT-AA-ATGAA---AT-ACCTTT---G-ATTACC----TAGTAACGATG------GCTTCAAAA-TCAA-CAGC-CAGGATGTGA--C--AT----TA--TTAC--C---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGAAGAGAGT-GGCATG--TTGACTG-GGTTAAGCCGTTTTGATACTCTGCTACTTACGATAAA--CAG--T-TGTT-AGC-GTAA---TACTA---CAAATATT--A------TA-GCACAGGCAGTCT-----AA-G---AGTGAC--C------AT-GG-AG-TG--A-A-AG-C---A-G-AGAA-AATTATATAAAC---GACGAG-ATCT-C---GTGT-TCCCATG-GTTAAGTTCGGTTTTAATAGCCAAT-AC----ACA----CGG------ATC-CAC-AAAGAC--CC-GCATTCAAAGGCAC--CC-GCGC----CA----CT------CCAG-------ACA---ACGACGATTAA--TATCTG--AAAG-AAAAATTTACAA-ATCGAAACCCC----ATTCTTAATATTCTATTT-GTTTGTT-TTT-TCT-TGTTTTG-TTTTT--A--TTG--AATTTTCTTTTTA-CT-TTTATTATATATAATAAGACATTCATAAAATTTCC---CCC-CCCCCCT-----CTCTCTCTCT-CTACATTGGAA-TG-A--T-AACAATGATT--AAACAAT--G-AAAAA------------ATA--C-TGCTAAATATAAGTCGCGGAGATATAT-CTG--ATA--TCAAAACAGAT-ACTT-C-TGCCT--GTCATAACCCCTTTT-CCG-TAG----AAGTTAAA------------CAGAacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttccacatggcatagtcagatagtacttcaagtacaattcaattcttattggaccaaattaagtgcccccaaagggcaatatgaaggtgtacaatggtataacatcccgttgttgcacgtgctagaggacaattgtgaataacacaggtgt
gi|6 : tccaGAGCC--AAAT-AT--CATTTTTTGG-T-TTATTT-TA-TGCCATTTGTTGAAAAA---T-AAATACCAATT----AA-TTG-T-C-TTAATTA-TTCT-------TAAACGATA-TAT-TTGA-CA--AAAA-TAAATAGTGTAGTTGTGCACC-T-AATAT-TATCCAC-ACTTTTCATG-AT-AAC----TGAGAACGGTGGAGGCTGTTGCAAAATATAA-G-ACAC-GGATGTGGAAC--GTTCCATATTTTATTCA---AC--TGTA-CG
gi|6 : gaaCATGCT----CAA-AGAAAAGAAAAGTGCACATAT-GG-AGGTGTGA-AGAG-AGATA-G-AAAA-AA--ATAAAAACCGTAAGGAG-AT-G-CGGGGTGTATCC-CTGCGT--AGT--GGCTTT-TT-GCCAATCACATCTACA----CGG------ATC-CTCAAAAGACAACCAAACTTAAA-GGGAACTCT-GCGC----CAACAGTTTTCGTACTAA-------CCATTCATGA-GAT--A--TATCTG--AAAGttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaacatgctcaaagaaaagaaaagtgcacatatggaggtgtgaagagagatagaaaaaaataaaaaccgtaaggagatgcggggtgtatccctgcgtagtggctttttgccaatcacatctacacggatcctcaaaagacaaccaaacttaaagggaactctgcgccaacagttttcgtactaaccattcatgagatatatctgaaag
gi|7 : gaagagccaaatatcattttttggtttattttatgccatttgttgaaaaataaataccaattaattgtcttaattattcttaaacgatatatttgacaaaaataaatagtgtagttgtgcacctaatattatccacacttttcatgataactgagaacggtggaggctgttgcaaaatataagacacggatgtggaacgttccatattttattcaactgtacgttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaaATG--G-AGAG-A---AAG-AGAA-GA--AAATAAAC---GAAGAT-ATCT-C---GTGT-TTCGC---AT--AGT--GGCTTTATT-GCCAAT-AT----ACA----CGGA------TC-CAC-AAAGAC--CCAACATCAAAGGGAAC--CC-GTG-----CA----CT------CCAG-------AC--ACACGA-GAT--A--TATCTG--GAAAAAAAA---TACTA-ATCG-AACCCC----ACTCTTTGT-TTTTTTTTCAATTTTC---T-TTT-TA-TCTG--TTTATGATATTGATAATTTCTCCTTTCTTT--------------------CTCTCTTAAAATTTT--CACCC-C-------------CTCTCTTT-CTACATT------------------TTA----AAGCAAT--GAAAAAAAAATATCG-AC-AAA--CTTGCTAAATATA--TC-C---G-TATATTCC----------AAAAC-GAT-GCCT-CGTGCCC--
gi|7 : gagtgcCCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTAAAAATCCATATGTA-------------TTTTTTT-GCATTATTATTTACCCAacccgtaagtttatgtcaagcggcatcgattacacaaaattttcatgtacgttttatgaataaacagtggaaaaggtatacggagtgcatttttattgataagtacgtatactcgtaatggtattttgtcagacttggaacttttaaaaatccatatgtatttttttgcattattatttaccca
gi|8 : gagtgcatggagagaaagagaagaaaataaacgaagatatctcgtgtttcgcatagtggctttattgccaatatacacggatccacaaagacccaacatcaaagggaacccgtgcactccagacacacgagatatatctggaaaaaaaatactaatcgaaccccactctttgtttttttttcaattttctttttatctgtttatgatattgataatttctcctttctttctctcttaaaattttcaccccctctctttctacattttaaagcaatgaaaaaaaaatatcgacaaacttgctaaatatatccgtatattccaaaacgatgcctcgtgCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTA-------------AAAATCCATATGTATTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA------CCG-ACTTTTAT-TTTTTTCGATAAGCTCGGAATTC-----ACGAAAT----AAACTTACAATATCATGT-AC---CGACTATA--ATAATCGTTT-------------------------GAAT-GATCCTTCT----CTG-GGCG-GT-AC----CG---A----------GA------------C-GAGGCCCGGGTGGAAT----TA---GATCTAAGAC-TCGTCTG---GC-ATT---CGAGCGAAACCCTGATTT--TCGCCGCTTCATC--GAAGAGATATG--AATAAAGT-CTGTAAC-C-AAG-TATAAAA--A-AA----GTCAAG-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCGCTGAATAGTCAATAAGTACTATACAAGATACAATTCAATTCGTTATATGATCAAATTTTTTCCCAATAAAAATAGGGCAATAAGAAGGTGTAACCAACTAGTTAAGCATCCCGTGTTGGCACGTCGGCCTTGATAAATAACCAGGTGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 11 1111111 1111 111 111 111111 11 2222222 111 111 11 222222 33333333 22222222 6666666666666666 222222 11 11 11111 11 333 11 1 3333 1 11 3333333333 111 1 1111 22222 1 6666666666666666666666666666666666666666666 1111 111 1111 111 22222 1111 1111 222222 11 2222222222222222222 3333333333 1 1111 11111 2 11 1111111 222222222222222222 222222222 222222222222 11 1 1 11 11 111 1 55555555 11 1 11 1 1 1111 555555555555555555 1 1 222222 44444444444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 999999999999999999999999999999999999999999999999999999999 1111111 44444444444 1 1 1 5555555555555555 22222222 1 11 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 2 111111 111 333333333333 1 111 2222 11 333 1 1 2222 2222 111
lowQualScore : 1 33 0 33 8888888 7777 8 8 8 444 8 5 3 8 8 000 8 0 7777777 5 444444 8 11 88 6666666 444 8 8 8 444 8 11 8 8 222222 88888888 8 22222222 0 3333333333333333 000000 11 6 11 88 999 55555 0 0 8 88 999 88 3 0000 0 22 55 55 5555555555 777 0 6666 66666 55 0 0 9999999999999999999999999999999999999999999 6666 1 888 000 6 99 1 4444 99 1 99 2 6 111 5 44444 77 77 0 1 5 5 2222 2222 888888 5 5 33 1 8 1 0 77 5 5555555555555555555 5555555555 5 77 77 99 3 777 1 8 5 0 7777 77777 0 1 88 8 8 11 88 22 1111111 1 666666666666666666 77 1 555 0 888888888 5 5 5 1 77 444444444444 8 0 33 0 0 33 3 0 55 444 0 0 0 00000000 8 8 8 11 0 33 0 0 7777 555555555555555555 3 7 0 000000 3 3 3 1 66666666666 99 2 7 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 6 1111111 1 6 1 222222222222222222222222222222222222222222222222222222222 999 0 5 9999999 3 88888888888 0 3 0 0 2 1 9999999999999999 3 88888888 0 33 2 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0 444444 777 1 999999999999 0 777 1 5555 2 11 000 0 88 5 8 0 3 0 88 1 1 4444 8 7777 8 0 6 2222 88 444 8 8
lowQualScore : . .. . .. ....... .... . . . ... . . . . . ... . . ....... . ...... . .. .. ....... ... . . . ... . .. . . ...... ........ . ........ . ................ ...... .. . .. .. ... ..... . . . .. ... .. . .... . .. .. .. .......... ... . .... ..... .. . . ........................................... .... . ... ... . .. . .... .. . .. . . ... . ..... .. .. . . . . .... .... ...... . . .. . . . . .. . ................... .......... . .. .. .. . ... . . . . .... ..... . . .. . . .. .. .. ....... . .................. .. . ... . ......... . . . . .. ............ . . .. . . .. . . .. ... . . . ........ . . . .. . .. . . .... .................. . . . ...... . . . . ........... .. . . . . ............................................................................................. . . ....... . . . ......................................................... ... . . ....... . ........... . . . . . . ................ . ........ . .. . . ........................................................................................... . . ...... ... . ............ . ... . .... . .. ... . .. . . . . . .. . . .... . .... . . . .... .. ... . .
lowQualScore : 0 88 0 22 0000000 6666 0 0 0 000 0 0 2 0 0 000 0 8 4444444 6 888888 0 00 88 0000000 000 0 0 0 000 0 88 0 0 000000 44444444 0 66666666 8 2222222222222222 888888 00 7 00 88 222 00000 8 8 0 33 000 33 3 2222 0 55 88 88 2222222222 555 5 5555 22222 00 0 2 3333333333333333333333333333333333333333333 0000 0 333 222 7 22 0 8888 22 5 22 5 7 777 7 33333 99 99 7 0 7 7 1111 1111 444444 7 7 66 7 4 7 4 99 7 7777777777777777777 7777777777 7 99 99 22 6 000 4 0 6 8 0000 66666 0 4 88 0 0 22 88 22 4444444 4 555555555555555555 99 7 111 7 444444444 7 7 7 4 99 666666666666 0 8 88 0 0 88 2 8 66 000 8 8 8 44444444 0 0 0 00 0 88 0 0 2222 888888888888888888 3 3 0 888888 2 2 2 2 22222222222 22 5 8 0 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 7 7777777 0 7 0 333333333333333333333333333333333333333333333333333333333 888 8 6 1111111 2 88888888888 0 2 0 0 5 0 8888888888888888 2 00000000 0 88 5 8 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 222222 555 0 000000000000 0 555 0 0000 5 00 888 6 88 0 0 6 6 6 88 0 4 4444 0 0000 0 6 4 2222 88 000 0 0
consensus : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---C--GT---ATA--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TATTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A-A-G-AGAA-AA--AAATAAA---CG--AAGAG-ATCT-C---GTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----CGGA-----ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAGACAT-------ACACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGA-TAT-TAATA--ACTCTCTTAAAATTTTCGCACCCCCCC-CCT-----CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-AA-TTA-TA--AGCAATG-AAAAAAAA--TATCG-ACA-TA--CTTGCTAAATATAAGTCGC---GATATATACCGATA--CAAAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCA--TCGAAGAGATATG-TAACCAAG-TATATAACAC-AAANTAAAAAAGT-A-AACATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
Reference ( family-34 ) : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---C--GT---ATA--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TACTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A-A-G-AGAA-AA--ANATAAA---CG--AAGAG-ATCT-C---GTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----CGGA-----ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAGACAT-------ACACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGA-TAT-TAATA--ACTCTCTTAAAATTTTCGCACCCCCCC-CCT-----CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-AA-TTA-TA--AGCAATG-AAAAAAAA--TATCG-ACA-TA--CTTGCTAAATATAAGTCGC---GATATATACCGATA--CAAAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCA--TCGAAGAGATATG-TAACCAAG-TATATAACAC-AAANTAAAAAAGT-A-AACATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
gi|1 : CCGGAAGT--AAAT-ATAACATTTT---G-T-TTATTTGTAATGC-ATTT-TT-AAAAAAAAT-AAATACCAACCGTAAAAATTA-T-T-TCAATTA-T-CTTAACCGATAAACGAT--CATATTGA-CA--AAA--TAA-------CGTTTT---CCGT-AA-AT-AA---ACCACCTTT-GTG-AT-ACCACCACGAAAACGA--------GCTTCAAAA-ATAAAC-GC-C-GGA-GTG---A--A----ACAG-TCAT--ACCGAC--TCCA-TGTGCAAGGTG-TTTTAAAT-AACATACAGTG-GAGAGT-GCAATGCCTTGAC---GCTT--GCCG-TCTGATAT---TC-GCAT-CGATAAAACCAGTCT-TATTCATCGGTCA---TA-TAT--CGATACC--ACAACGGCG-GAACAGACATTCT----CAA-G---AAGAATAGC------ATCGGTAGATG--ATAAAG-A-A-GTAGCG-AA--ATATAA----CG--AAGAG-ATCTGC---GTGT-TCCGCCG-GT--AGT--GAGTTTAAT-GCCAAT-AC----ACA----CGGA-----ATC-CAA-CAAGACT-CCAACAACAAAAGGGAA--CC-GTGCGCATCA----CT------CCAGACATTTCACATACACGA-GAT--AACAATCTA--AAAGGAGAAATTTACAA-ATC--AACCCC----ATTCTTTAT-ATCTATTT-GTTTATC-TGTATTT-TATTTCC-TTTTTTAAT-TTG--AATTTCCCATTTATCTGTTTATGAATAT--AATA--AC---CTTAAAATTTTCGCACCCACCCACCT-----CTCTCTCTCTCCTACATT-GAA-TGAA--TAA-AAATTA-TACAAGCAATA-AAAAAAAAAATATCG-ACAATAATCTTGCTAAATA-AATTCGC---GATATATACCGATATACAAAAAC-GATAACTT-CGTGCCT--GTC-TAA--CCCTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAA-GA-GG--G---GGGTGTGTAAGAT--TA----------CCCCCCCCGGTAAGTTTATGTCCAAGCGGCATCGATTACACAATA-TTTCGTCTAAG-TTTA-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACTCCG-------T-ATAGCTTTTT-GTCAGACTTTGA-----------------------ACTTGTA-------------G-------------CTTTCTA-GCA---------------TTCATGTGCTGT---AAAGTAGACCG-ATTTTTAT-TTTTT-CAACAAGCTCGGAAGTC-----A-----T----AAACTTACAATATCATGTATATTCCGAC-ATA--ATAATCGTTTGATATCTT-----------ATCAATAAATCCACCCTTCTTGTGCCG-G-CACGT-GT----CGTGTAAAAAGGGTTCGA------------C-GAGTCCCGGGTGGAATATACTA---GAATTAAGAC-C-----G---GCAATTTCCCGAGCGAAACCCAGATTT--G-GCCGCTTCA--TTGAAG---TCTG-TAACCAAG-TATA-AACAC-AAACCAAAAA--T-A-AACAT-TCAAG-TTTTCTTAAGCCTCTT-TAATGGAC---TGATGTGATGAA-GTATGGT-CCAC
gi|10 : ATGC-ATTT-TT-AATAA---T-AAATTCCAACCGTAAAA-TTA-T-T-TCAATTA-TT------------------------TGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-A-C----CGAGAACGA-G------GCTTCAAAA-ATAA-C-AC-C-AGATGTG------AC---ATA--TTAT--A---AC--TGCA-TAGGCA--GTG--TTTAA-C-AACA---A-GGAGATAGT-GC
gi|11 : CTGTTTATGA-TAT-TAATA--ACTCTCTTAAATTTTTCGCACCCCCCC-CCCCCTCACTCTCTCTCTC-TACATT-GAACTGAA--TAATAA-TTT-AA--AGCAATG-AAAAAAA
gi|12 : CGCTTCA--TTGAAG---TATG-TAACCAAG-TATA--ACAC-AAACAAAAAAAGT-AGAACATGTCAAG-TTTTCTTAAGC-TCAT-TAATGGAC-TTTGAT---ATGAA-GAATGGT-ACA
gi|13 : TGT-TCTA-TG-GC---GT--GTGTGTATT-GCCAAT-AC----ACAGTGTCGTACGTAGATT-CAC-GTAGAC--CCTAT-TCATAGGGAAA---C-GCG-----CA----CC------TTATGTAT-------ACA--A-CAT--AT--AT
gi|14 : AATA--ACTCTCTTAAAAATTTCGCACCCTCCC-A---------CTCTCTCTC-TACATT-GAA-TGAA--TAA-
gi|15 : TTG-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-At
gi|16 : CA-TGGACA--GTT-TTTTAA-C-AACA---A-GGAGAGAGT-GCAaggattgagtgcatttatttat
gi|2 : accacccATAC---AC-GCA--CGATAGAACCGATAT--ATA-AT--GTCAAGATATAACTTCGGTACTGTACCACCCCATGGACAG---TTTTACAACAACG---GAGAAGTGC------AT-G-----TG--AGAGAG-A-A-A-AGAAGAA--AAATAAA---CG--AAGATTATCT-C---GATT-TTCGC---AT--AGT--GGGCTTATT-GC-AAT-AT----ACA----CCGG-----ATCACAC-AGAACT--CCAAC-TCAAAGGAGAA--CCCGTGC-----A----CT------CCAGACAC--------TACGA-GAT--AT--ATCTGGAAAAAAAAAAA---ACTATATCGAAACCCCTCGTATTTTTCTT-TTCAATTTCTTTTATCATGT-TTA-TA---TGATATATTGAT------AATTTCTCCTTT-----TT------------------CTCTCTTAAAATTT---CA----CCC-CCT-----CTCTTTC------ACA-T-GAA-TGAACTTAA-AA-TTT-AA--AGCAATG-AAAAAAAA--TATCGAACA-TA--CTTGCTAAATATA--TCGT---CATAT---CC--------AAAAC-GATG-CCTACGTGCCCTGGTG-TAA--CTTTTT-CCGTTAGAAATAAA-TAAAGTCATTTCTTATCAGATAAATCAATGATGGGTGA--GGGTG-GTAAGATAAAA------------ACACCTCGTAAGTTTATGT--AAGCGGCATCGATTACACAA-ATTTTCA-GCACGTTTTATTGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACtg
gi|2 : atattAAGA-AC----------G-----T-------------------------ATTACT-CG-------TAATGGTATTTT-GTCAGACTTGGAACTTTTAAAAATCGCATATGTAAACTTTTA-------------A-------------TTTTTTTTGCATTATTATT-ACCCACTTCATG-GCTGT---A---TA-CACG-ACTTT-AT-TTTTT-CGATAAGCTCG-AATTCCACGAA-----A----AAACT-ACAATATCAT-T-TA---CGAC-TAA--ATAAA---------TCTT-----------G--AA----T-TGTCCTTCT----CGG-G-CG-GGGAC----CG---A----------GA------------C-GAG-CCCGGGTGGA--AT--TA---GATCTAAGACTC-----GTCTGC-ATT---CGAGCGAAACCCTGATTTTCGCGCCGCATCA--TCGAAGAGATATGATAAC--AG-TCTATAAC-C-AAGTTATAAAA---A-A----GTCGAA-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ggagctgcattttttgatacaagaacgtattactcgtaatggtattttgtcagacttggaacttttaaaaatcgcatatgtaaacttttaattttttttgcattattattacccacttcatggctgtatacacgactttattttttcgataagctcgaattccacgaaaaaactacaatatcatttacgactaaataaatcttgaattgtccttctcgggcggggaccgagacgagcccgggtggaattagatctaagactcgtctgcattcgagcgaaaccctgattttcgcgccgcatcatcgaagagatatgataacagtctataaccaagttataaaaaagtcgaattttcttcagcttcttcttggactttgatatgaagtatggtaacc
gi|3 : atattatacacgcacgatagaaccgatatataatgtcaagatataacttcggtactgtaccaccccatggacagttttacaacaacggagaagtgcatgtgagagagaaaagaagaaaaataaacgaagattatctcgattttcgcatagtgggcttattgcaatatacaccggatcacacagaactccaactcaaaggagaacccgtgcactccagacactacgagatatatctggaaaaaaaaaaaactatatcgaaacccctcgtatttttcttttcaatttcttttatcatgtttatatgatatattgataatttctcctttttctctcttaaaatttcaccccctctctttcacatgaatgaacttaaaatttaaagcaatgaaaaaaaatatcgaacatacttgctaaatatatcgtcatatccaaaacgatgcctacgtgccctggtgtaactttttccgttagaaataaataaagtcatttcttatcagataaatcaatgatgggtgagggtggtaagataaaaacacctcgtaagtttatgtaagcggcatcgattacacaaattttcagcacgttttattgaataaacagtggaaaaggtatacggagctgcattttttgatacCCGGAATTCTAAATTATA-CATTTTT--GGT-TTAATT-TTATGC-AATT-TT-TAAAA---T-AAATACGCACCGTAAAA-TTA-TATATTAATTATTTCTTAACCGATAAACGATACTATTTTGATCA--AAAATTAA-------CGTTTT---CTGTCAA-AT-AA---AC-ACTTTA-ATGAAT-A-C----CGAGAACGA-G------GCTTCCAAA-ATAAGC-AC-CTGGATGTG---CGTGT---ATG--TTAT--A---ACTGTGCAGTCGGCA---TGTTTTTAA-CAAACA---AGGGAG-GAGTGGCAATG--TTGACTTGGCTT--GCCG-TCTGATAT----C-GCATACGATAATAACAGTCTATGGT--TTAGTCG---TATTAC--ACATATC--A-GACGGCA-GGCCAG----TCT---------------AATA------------GTGCATG--A-AGTGAA-A-G-AGAA-GA--AAA--------------------T-T---GTGT-TCCGC---GT--AGT--GGGTTTAAT-GCCAAT-AC----ACA----CGG------ATC-CAC-AAAGAC--CCAACATCAAAGGGAAA--CC-GCG-----CA----CT------CCAGAC---------ACACGA-GAT--AT--ATCTG--AAAG--AAAATTTAATA-ATCGAA--------------------CCTATTT-GTTTGTT-TGT-TTTGTTTGTTG-TTTTTTAGT-TTG--AATTTTCTTTTTATCTGTTCATGA-TAT-TAATA--ACTCTCTTAAAATGTTCGCACCCCC-----------CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-----TA-TA--AGacc
gi|3 : cttAATATAAGTCGC---GATATATATCCGTAGTCAAAAAC-GATA-CTT-CGTACCT--GTC-TAA--CCTTTTTCCG-TAGGA--AA----------------------TAAA-CAATGA-GG--GACAGGGTGTGTAAGATAACA----------CCCCACCCCGTAGGTCT---------------CGATTACAAAATATTTTCGTGTAAGTTTTA-TGAATAATTCAGAATAAA------------------AGTG----------GAAAAGGT----------A-----TACGGAATGCATTTTTATTTATAAGGAT-ACT-CG-------TAATGGTTTTTT-GTCAGACTTTGA-----------------------tcgcgatatatatccgtagtcaaaaacgatacttcgtacctgtctaacctttttccgtaggaaataaacaatgagggacagggtgtgtaagataacaccccaccccgtaggtctcgattacaaaatattttcgtgtaagttttatgaataattcagaataaaagtggaaaaggtatacggaatgcatttttatttataaggatactcgtaatggttttttgtcagactttga
gi|4 : cttccggaattctaaattatacatttttggtttaattttatgcaatttttaaaataaatacgcaccgtaaaattatatattaattatttcttaaccgataaacgatactattttgatcaaaaattaacgttttctgtcaaataaacactttaatgaataccgagaacgaggcttccaaaataagcacctggatgtgcgtgtatgttataactgtgcagtcggcatgtttttaacaaacaagggaggagtggcaatgttgacttggcttgccgtctgatatcgcatacgataataacagtctatggtttagtcgtattacacatatcagacggcaggccagtctaatagtgcatgaagtgaaagagaagaaaattgtgttccgcgtagtgggtttaatgccaatacacacggatccacaaagacccaacatcaaagggaaaccgcgcactccagacacacgagatatatctgaaagaaaatttaataatcgaacctatttgtttgtttgttttgtttgttgttttttagtttgaattttctttttatctgttcatgatattaataactctcttaaaatgttcgcacccccctctctctctctacattgaatgaat-GG--GA--GGGTGTGTA-GATAATATCCCCCCCCCCCCCCCCCCG-GAGTTTATGT-CAAGCG-CATCGATTACACAATATTTTCGTGTAAGTTTTA-TAAATAA----------C------------------AGTG----------GAAAG-GTTACAGAGATGGCATTTT-------------------------AT-ATT-TGATAAGATTAATGGTTTTTTTGTAAGACTTTGA-----------------------ACTTGTA-------------G-------------TTTTA---GCATT-TCATT----------ACGTGCTGTTTAAAC-TA-ACCGGATTCTTATATTTGT-CGATAAGCTCGGAAGTC-----A-----TGAAAAAACTTACATTATCAT-T-TA---CGAC-ATATAATAATCGTCT----TGTTCATTATAAAAAA--AA-AAAT-GACCCTTCT----CTGTG-CG-GC-ACGTGTCG---G----------GAAAAGGGTAGCGACAGAG-CCCGGGTGGAATAT--TACTAGAATTAAGAC-C-----G----C-ATT---CGAGCGAAACCCAGATTT--G-G-CGCTTCATTTTGAAG---TCTT-TAACCAAGTTATACAACACAAAAGTAAAAAAGTAA-AACATGTCAAGTTTTTCTTAAG-CTCTT-TAATGGACTTTTGAT---ATGAAGGTATGGTAACAC
gi|5 : gcagGGAAGT--AGAT-ACA-CATTTTT--G-TATCATTT---ATGC-ATTT-TT-AAAAA---TTAAATAC-AACGATAAAA-TTAGT-T-TCAATTA-TTCTTAACCGATAA-CGATA-TATATTGA-CATAAAAA-TAA-------CGTTTT---CCGT-AA-ATGAA---AT-ACCTTT---G-ATTACC----TAGTAACGATG------GCTTCAAAA-TCAA-CAGC-CAGGATGTGA--C--AT----TA--TTAC--C---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGAAGAGAGT-GGCATG--TTGACTG-GGTTAAGCCGTTTTGATACTCTGCTACTTACGATAAA--CAG--T-TGTT-AGC-GTAA---TACTAC--AAATATT--A------TA-GCACAGGCAGTCT-----AA-G---AGTGAC--C------AT-GG-AG-TG--A-A-AG-C-A-G-AGAA-AATTATATAAA---CG--ACGAG-ATCT-C---GTGT-TCCCATG-GTTAAGTTCGGTTTTAATAGCCAAT-AC----ACA----CGG------ATC-CAC-AAAGAC--CC-GCATTCAAAGGCAC--CC-GCGC----CA----CT------CCAGACA----------ACGACGATTAAT--ATCTG--AAAG-AAAAATTTACAA-ATCGAAACCCC----ATTCTTAATATTCTATTT-GTTTGTT-TTT-TCT-TGTTTTG-TTTTT--A--TTG--AATTTTCTTTTTA-CT-TTTATTA-TATATAATAAGACATTCATAAAATTTCC---CCCCCCC-CCT-----CTCTCTCTCTC-TACATTGGAA-TG-A--TAACAA-TGATTA--AACAATG-AAAAA-------------A-TA--C-TGCTAAATATAAGTCGCGGAGATATAT-CTGATA--TCAAAACAGATA-CTT-C-TGCCT--GTCATAACCCCTTTT-CCG-TAG----AAGTTAAA------------CAGAacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttccacatggcatagtcagatagtacttcaagtacaattcaattcttattggaccaaattaagtgcccccaaagggcaatatgaaggtgtacaatggtataacatcccgttgttgcacgtgctagaggacaattgtgaataacacaggtgt
gi|6 : tccaGAGCC--AAAT-AT--CATTTTTTGG-T-TTATTT-TA-TGCCATTTGTTGAAAAA---T-AAATACCAATT----AA-TTG-T-C-TTAATTA-TTCT-------TAAACGATA-TAT-TTGA-CA--AAAA-TAAATAGTGTAGTTGTGCACC-T-AATAT-TATCCAC-ACTTTTCATG-AT-AAC----TGAGAACGGTGGAGGCTGTTGCAAAATATAA-G-ACAC-GGATGTGGAAC--GTTCCATATTTTATTCA---AC--TGTA-CG
gi|6 : gaaCATGCT----CAA-AGAAAAGAAAAGTGCACATAT-GG-AGGTGTGA-AGAG-AGA-T-AGAA-AA--AAATAAAAACCGTAAGGAG-AT-G-CGGGGTGTATCC-CTGCGT--AGT--GGCTTT-TT-GCCAATCACATCTACA----CGG------ATC-CTCAAAAGACAACCAAACTTAAA-GGGAACTCT-GCGC----CAACAGTTTTCGTACTAACCAT-------TCATGA-GAT--AT--ATCTG--AAAGttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaacatgctcaaagaaaagaaaagtgcacatatggaggtgtgaagagagatagaaaaaaataaaaaccgtaaggagatgcggggtgtatccctgcgtagtggctttttgccaatcacatctacacggatcctcaaaagacaaccaaacttaaagggaactctgcgccaacagttttcgtactaaccattcatgagatatatctgaaag
gi|7 : gaagagccaaatatcattttttggtttattttatgccatttgttgaaaaataaataccaattaattgtcttaattattcttaaacgatatatttgacaaaaataaatagtgtagttgtgcacctaatattatccacacttttcatgataactgagaacggtggaggctgttgcaaaatataagacacggatgtggaacgttccatattttattcaactgtacgttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaaATG--G-AGAG-A-AAG-AGAA-GA--AAATAAA---CG--AAGAT-ATCT-C---GTGT-TTCGC---AT--AGT--GGCTTTATT-GCCAAT-AT----ACA----CGGA------TC-CAC-AAAGAC--CCAACATCAAAGGGAAC--CC-GTG-----CA----CT------CCAGAC---------ACACGA-GAT--AT--ATCTG--GAAAAAAAA---TACTA-ATCG-AACCCC----ACTCTTTGT-TTTTTTTTCAATTTTC---T-TTT-TA-TCTG--TTTATGATATTGATAATTTCTCCTTTCTTT---------------------CTCTCTTAAAATTTT--CACCCC--------------CTCTCTTTC-TACATT------------------TTA--A--AGCAATGAAAAAAAAA--TATCG-ACA-AA--CTTGCTAAATATA--TC-C---G-TATATTCC--------AAAAC-GATG-CCT-CGTGCCC--
gi|7 : gagtgcCCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTAAAAATCCATATGTA-------------TTTTTTT-GCATTATTATTTACCCAacccgtaagtttatgtcaagcggcatcgattacacaaaattttcatgtacgttttatgaataaacagtggaaaaggtatacggagtgcatttttattgataagtacgtatactcgtaatggtattttgtcagacttggaacttttaaaaatccatatgtatttttttgcattattatttaccca
gi|8 : gagtgcatggagagaaagagaagaaaataaacgaagatatctcgtgtttcgcatagtggctttattgccaatatacacggatccacaaagacccaacatcaaagggaacccgtgcactccagacacacgagatatatctggaaaaaaaatactaatcgaaccccactctttgtttttttttcaattttctttttatctgtttatgatattgataatttctcctttctttctctcttaaaattttcaccccctctctttctacattttaaagcaatgaaaaaaaaatatcgacaaacttgctaaatatatccgtatattccaaaacgatgcctcgtgCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTA-------------AAAATCCATATGTATTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA------CCG-ACTTTTAT-TTTTTTCGATAAGCTCGGAATTC-----ACGAAAT----AAACTTACAATATCATGT-AC---CGACTATA--ATAATCGTTT-------------------------GAAT-GATCCTTCT----CTG-GGCG-GT-AC----CG---A----------GA------------C-GAGGCCCGGGTGGAAT----TA---GATCTAAGAC-TCGTCTG---GC-ATT---CGAGCGAAACCCTGATTT--TCGCCGCTTCA--TCGAAGAGATATG--AATAAAG-TCTGTAAC-C--AAGTATAAAA---A-AA---GTCAAG-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCGCTGAATAGTCAATAAGTACTATACAAGATACAATTCAATTCGTTATATGATCAAATTTTTTCCCAATAAAAATAGGGCAATAAGAAGGTGTAACCAACTAGTTAAGCATCCCGTGTTGGCACGTCGGCCTTGATAAATAACCAGGTGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 11 1111111 1111 111 111 111111 11 2222222 111 111 11 222222 33333333 22222222 6666666666666666 222222 11 11 11111 11 333 11 1 3333 1 11 3333333333 111 1111 22222 1 6666666666666666666666666666666666666666666 1111 111 1111 111 22222 1111 1111 333333 11 2222222222222222222 3333333333 1 1111 11111 2 11 1111111 222222222222222222 222222222 222222222222 11 1 1 11 11 111 1 55555555 11 1 11 1 1 1111 555555555555555555 1 1 222222 44444444444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 999999999999999999999999999999999999999999999999999999999 1111111 44444444444 1 1 1 5555555555555555 22222222 1 11 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 2 111111 111 333333333333 1 111 2222 11 333 1 1 22222222222 2222 111
lowQualScore : 1 33 0 33 8888888 7777 8 8 8 444 8 5 3 8 8 000 8 0 7777777 5 444444 8 11 88 6666666 444 8 8 8 444 8 11 8 8 222222 88888888 8 22222222 0 3333333333333333 000000 11 6 11 88 999 55555 0 0 8 88 999 88 3 0000 0 22 55 55 5555555555 777 9 6666 66666 55 0 0 9999999999999999999999999999999999999999999 6666 1 888 000 6 99 4444 99 1 99 2 6 111 5 44444 77 77 0 1 5 5 2222 2222 555555 5 5 33 1 8 1 0 77 5 5555555555555555555 5555555555 5 77 77 99 3 777 1 8 5 0 7777 77777 0 1 88 8 8 11 88 22 1111111 1 666666666666666666 77 1 555 0 888888888 5 5 5 1 77 444444444444 8 0 33 0 0 33 3 0 55 444 0 0 0 00000000 8 8 8 11 0 33 0 0 7777 555555555555555555 3 7 0 000000 3 3 3 1 66666666666 99 2 7 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 6 1111111 1 6 1 222222222222222222222222222222222222222222222222222222222 999 0 5 9999999 3 88888888888 0 3 0 0 2 1 9999999999999999 3 88888888 0 33 2 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0 444444 777 1 999999999999 0 777 1 5555 11 000 0 88 5 88 3 0 0 99 1 11111111111 8 0 6 2222 88 444 8 8
lowQualScore : . .. . .. ....... .... . . . ... . . . . . ... . . ....... . ...... . .. .. ....... ... . . . ... . .. . . ...... ........ . ........ . ................ ...... .. . .. .. ... ..... . . . .. ... .. . .... . .. .. .. .......... ... . .... ..... .. . . ........................................... .... . ... ... . .. .... .. . .. . . ... . ..... .. .. . . . . .... .... ...... . . .. . . . . .. . ................... .......... . .. .. .. . ... . . . . .... ..... . . .. . . .. .. .. ....... . .................. .. . ... . ......... . . . . .. ............ . . .. . . .. . . .. ... . . . ........ . . . .. . .. . . .... .................. . . . ...... . . . . ........... .. . . . . ............................................................................................. . . ....... . . . ......................................................... ... . . ....... . ........... . . . . . . ................ . ........ . .. . . ........................................................................................... . . ...... ... . ............ . ... . .... .. ... . .. . .. . . . .. . ........... . . . .... .. ... . .
lowQualScore : 0 88 0 22 0000000 6666 0 0 0 000 0 0 2 0 0 000 0 8 4444444 6 888888 0 00 88 0000000 000 0 0 0 000 0 88 0 0 000000 44444444 0 66666666 8 2222222222222222 888888 00 7 00 88 222 00000 8 8 0 33 000 33 3 2222 0 55 88 88 2222222222 555 8 5555 22222 00 0 2 3333333333333333333333333333333333333333333 0000 0 333 222 7 22 8888 22 5 22 5 7 777 7 33333 99 99 7 0 7 7 1111 1111 444444 7 7 66 7 4 7 4 99 7 7777777777777777777 7777777777 7 99 99 22 6 000 4 0 6 8 0000 66666 0 4 88 0 0 22 88 22 4444444 4 555555555555555555 99 7 111 7 444444444 7 7 7 4 99 666666666666 0 8 88 0 0 88 2 8 66 000 8 8 8 44444444 0 0 0 00 0 88 0 0 2222 888888888888888888 3 3 0 888888 2 2 2 2 22222222222 22 5 8 0 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 7 7777777 0 7 0 333333333333333333333333333333333333333333333333333333333 888 8 6 1111111 2 88888888888 0 2 0 0 5 0 8888888888888888 2 00000000 0 88 5 8 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 222222 555 0 000000000000 0 555 0 0000 00 888 6 88 0 66 6 6 8 00 4 44444444444 0 6 4 2222 88 000 0 0
consensus : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---C--GT---ATA--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TATTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A-A-G-AGAA-AA--AAATAAA---CG--AAGAG-ATCT-C---GTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----CGG------ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAGACAT-------ACACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGA-TAT-TAATA--ACTCTCTTAAAATTTTCGCACCCCCCC-CCT-----CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-AA-TTA-TA--AGCAATG-AAAAAAAA--TATCG-ACA-TA--CTTGCTAAATATAAGTCGC---GATATATACCGATA--CAAAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCATC--GAAGAGATATG-TAACCAAGT-ATATAACACAAAN-TAAAAAAGTA-AA-CATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
Reference ( family-34 ) : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---C--GT---ATA--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TATTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A-A-G-AGAA-AA--AAATAAA---CG--AAGAG-ATCT-C---GTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----CGGA-----ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAGACAT-------ACACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGA-TAT-TAATA--ACTCTCTTAAAATTTTCGCACCCCCCC-CCT-----CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-AA-TTA-TA--AGCAATG-AAAAAAAA--TATCG-ACA-TA--CTTGCTAAATATAAGTCGC---GATATATACCGATA--CAAAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCATC--GAAGAGATATG-TAACCAAGT-ATATAACACAAAN-TAAAAAAGTA-AA-CATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
gi|1 : CCGGAAGT--AAAT-ATAACATTTT---G-T-TTATTTGTAATGC-ATTT-TT-AAAAAAAAT-AAATACCAACCGTAAAAATTA-T-T-TCAATTA-T-CTTAACCGATAAACGAT--CATATTGA-CA--AAA--TAA-------CGTTTT---CCGT-AA-AT-AA---ACCACCTTT-GTG-AT-ACCACCACGAAAACGA--------GCTTCAAAA-ATAAAC-GC-C-GGA-GTG---A--A----ACAG-TCAT--ACCGAC--TCCA-TGTGCAAGGTG-TTTTAAAT-AACATACAGTG-GAGAGT-GCAATGCCTTGAC---GCTT--GCCG-TCTGATAT---TC-GCAT-CGATAAAACCAGTCT-TATTCATCGGTCA---TAT-AT--CGATACC--ACAACGGCG-GAACAGACATTCT----CAA-G---AAGAATAGC------ATCGGTAGATG--ATAAAG-A-A-GTAGCG-AA--ATATAA----CG--AAGAG-ATCTGC---GTGT-TCCGCCG-GT--AGT--GAGTTTAAT-GCCAAT-AC----ACA----CGGA-----ATC-CAA-CAAGACT-CCAACAACAAAAGGGAA--CC-GTGCGCATCA----CT------CCAGACATTTCACATACACGA-GAT--AACAATCTA--AAAGGAGAAATTTACAA-ATC--AACCCC----ATTCTTTAT-ATCTATTT-GTTTATC-TGTATTT-TATTTCC-TTTTTTAAT-TTG--AATTTCCCATTTATCTGTTTATGAATAT--AATA--AC---CTTAAAATTTTCGCACCCACCCACCT-----CTCTCTCTCTCCTACATT-GAA-TGAA--TAA-AAATTA-TACAAGCAATA-AAAAAAAAAATATCG-ACAATAATCTTGCTAAATA-AATTCGC---GATATATACCGATATACAAAAAC-GATAACTT-CGTGCCT--GTC-TAA--CCCTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAA-GA-GG--G---GGGTGTGTAAGAT--TA----------CCCCCCCCGGTAAGTTTATGTCCAAGCGGCATCGATTACACAATA-TTTCGTCTAAG-TTTA-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACTCCG-------T-ATAGCTTTTT-GTCAGACTTTGA-----------------------ACTTGTA-------------G-------------CTTTCTA-GCA---------------TTCATGTGCTGT---AAAGTAGACCG-ATTTTTAT-TTTTT-CAACAAGCTCGGAAGTC-----A-----T----AAACTTACAATATCATGTATATTCCGAC-ATA--ATAATCGTTTGATATCTT-----------ATCAATAAATCCACCCTTCTTGTGCCG-G-CACGT-GT----CGTGTAAAAAGGGTTCGA------------C-GAGTCCCGGGTGGAATATACTA---GAATTAAGAC-C-----G---GCAATTTCCCGAGCGAAACCCAGATTT--G-GCCGCTTCATT--GAAG---TCTG-TAACCAAGT-ATA-AACACAAAC-CAAAAA--TA-AA-CAT-TCAAG-TTTTCTTAAGCCTCTT-TAATGGAC---TGATGTGATGAA-GTATGGT-CCAC
gi|10 : ATGC-ATTT-TT-AATAA---T-AAATTCCAACCGTAAAA-TTA-T-T-TCAATTA-TT------------------------TGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-A-C----CGAGAACGA-G------GCTTCAAAA-ATAA-C-AC-C-AGATGTG------AC---ATA--TTAT--A---AC--TGCA-TAGGCA--GTG--TTTAA-C-AACA---A-GGAGATAGT-GC
gi|11 : CTGTTTATGA-TAT-TAATA--ACTCTCTTAAATTTTTCGCACCCCCCC-CCCCCTCACTCTCTCTCTC-TACATT-GAACTGAA--TAATAA-TTT-AA--AGCAATG-AAAAAAA
gi|12 : CGCTTCATT--GAAG---TATG-TAACCAAGT-ATA--ACACAAAC-AAAAAAAGTAGAA-CATGTCAAG-TTTTCTTAAGC-TCAT-TAATGGAC-TTTGAT---ATGAA-GAATGGT-ACA
gi|13 : TGT-TCTA-TG-GC---GT--GTGTGTATT-GCCAAT-AC----ACAGTGTCGTACGTAGATT-CAC-GTAGAC--CCTAT-TCATAGGGAAA---C-GCG-----CA----CC------TTATGTAT-------ACA--A-CAT--AT--AT
gi|14 : AATA--ACTCTCTTAAAAATTTCGCACCCTCCC-A---------CTCTCTCTC-TACATT-GAA-TGAA--TAA-
gi|15 : TTG-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-At
gi|16 : CA-TGGACA--GTT-TTTTAA-C-AACA---A-GGAGAGAGT-GCAaggattgagtgcatttatttat
gi|2 : accacccATAC---AC-GCA--CGATAGAACCGATAT--ATA-AT--GTCAAGATATAACTTCGGTACTGTACCACCCCATGGACAG---TTTTACAACAACG---GAGAAGTGC------AT-G-----TG--AGAGAG-A-A-A-AGAAGAA--AAATAAA---CG--AAGATTATCT-C---GATT-TTCGC---AT--AGT--GGGCTTATT-GC-AAT-AT----ACA----CCGG-----ATCACAC-AGAACT--CCAAC-TCAAAGGAGAA--CCCGTGC-----A----CT------CCAGACAC--------TACGA-GAT--AT--ATCTGGAAAAAAAAAAA---ACTATATCGAAACCCCTCGTATTTTTCTT-TTCAATTTCTTTTATCATGT-TTA-TA---TGATATATTGAT------AATTTCTCCTTT-----TT------------------CTCTCTTAAAATTT---CA----CCC-CCT-----CTCTTTC------ACA-T-GAA-TGAACTTAA-AA-TTT-AA--AGCAATG-AAAAAAAA--TATCGAACA-TA--CTTGCTAAATATA--TCGT---CATAT---CC--------AAAAC-GATG-CCTACGTGCCCTGGTG-TAA--CTTTTT-CCGTTAGAAATAAA-TAAAGTCATTTCTTATCAGATAAATCAATGATGGGTGA--GGGTG-GTAAGATAAAA------------ACACCTCGTAAGTTTATGT--AAGCGGCATCGATTACACAA-ATTTTCA-GCACGTTTTATTGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACtg
gi|2 : atattAAGA-AC----------G-----T-------------------------ATTACT-CG-------TAATGGTATTTT-GTCAGACTTGGAACTTTTAAAAATCGCATATGTAAACTTTTA-------------A-------------TTTTTTTTGCATTATTATT-ACCCACTTCATG-GCTGT---A---TA-CACG-ACTTT-AT-TTTTT-CGATAAGCTCG-AATTCCACGAA-----A----AAACT-ACAATATCAT-T-TA---CGAC-TAA--ATAAA---------TCTT-----------G--AA----T-TGTCCTTCT----CGG-G-CG-GGGAC----CG---A----------GA------------C-GAG-CCCGGGTGGA--AT--TA---GATCTAAGACTC-----GTCTGC-ATT---CGAGCGAAACCCTGATTTTCGCGCCGCATCATC--GAAGAGATATGATAAC--AGT-CTATAAC-CAAGT-TATAAAA--A-A-----GTCGAA-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ggagctgcattttttgatacaagaacgtattactcgtaatggtattttgtcagacttggaacttttaaaaatcgcatatgtaaacttttaattttttttgcattattattacccacttcatggctgtatacacgactttattttttcgataagctcgaattccacgaaaaaactacaatatcatttacgactaaataaatcttgaattgtccttctcgggcggggaccgagacgagcccgggtggaattagatctaagactcgtctgcattcgagcgaaaccctgattttcgcgccgcatcatcgaagagatatgataacagtctataaccaagttataaaaaagtcgaattttcttcagcttcttcttggactttgatatgaagtatggtaacc
gi|3 : atattatacacgcacgatagaaccgatatataatgtcaagatataacttcggtactgtaccaccccatggacagttttacaacaacggagaagtgcatgtgagagagaaaagaagaaaaataaacgaagattatctcgattttcgcatagtgggcttattgcaatatacaccggatcacacagaactccaactcaaaggagaacccgtgcactccagacactacgagatatatctggaaaaaaaaaaaactatatcgaaacccctcgtatttttcttttcaatttcttttatcatgtttatatgatatattgataatttctcctttttctctcttaaaatttcaccccctctctttcacatgaatgaacttaaaatttaaagcaatgaaaaaaaatatcgaacatacttgctaaatatatcgtcatatccaaaacgatgcctacgtgccctggtgtaactttttccgttagaaataaataaagtcatttcttatcagataaatcaatgatgggtgagggtggtaagataaaaacacctcgtaagtttatgtaagcggcatcgattacacaaattttcagcacgttttattgaataaacagtggaaaaggtatacggagctgcattttttgatacCCGGAATTCTAAATTATA-CATTTTT--GGT-TTAATT-TTATGC-AATT-TT-TAAAA---T-AAATACGCACCGTAAAA-TTA-TATATTAATTATTTCTTAACCGATAAACGATACTATTTTGATCA--AAAATTAA-------CGTTTT---CTGTCAA-AT-AA---AC-ACTTTA-ATGAAT-A-C----CGAGAACGA-G------GCTTCCAAA-ATAAGC-AC-CTGGATGTG---CGTGT---ATG--TTAT--A---ACTGTGCAGTCGGCA---TGTTTTTAA-CAAACA---AGGGAG-GAGTGGCAATG--TTGACTTGGCTT--GCCG-TCTGATAT----C-GCATACGATAATAACAGTCTATGGT--TTAGTCG---TATTAC--ACATATC--A-GACGGCA-GGCCAG----TCT---------------AATA------------GTGCATG--A-AGTGAA-A-G-AGAA-GA--AAA--------------------T-T---GTGT-TCCGC---GT--AGT--GGGTTTAAT-GCCAAT-AC----ACA----CGG------ATC-CAC-AAAGAC--CCAACATCAAAGGGAAA--CC-GCG-----CA----CT------CCAGAC---------ACACGA-GAT--AT--ATCTG--AAAG--AAAATTTAATA-ATCGAA--------------------CCTATTT-GTTTGTT-TGT-TTTGTTTGTTG-TTTTTTAGT-TTG--AATTTTCTTTTTATCTGTTCATGA-TAT-TAATA--ACTCTCTTAAAATGTTCGCACCCCC-----------CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-----TA-TA--AGacc
gi|3 : cttAATATAAGTCGC---GATATATATCCGTAGTCAAAAAC-GATA-CTT-CGTACCT--GTC-TAA--CCTTTTTCCG-TAGGA--AA----------------------TAAA-CAATGA-GG--GACAGGGTGTGTAAGATAACA----------CCCCACCCCGTAGGTCT---------------CGATTACAAAATATTTTCGTGTAAGTTTTA-TGAATAATTCAGAATAAA------------------AGTG----------GAAAAGGT----------A-----TACGGAATGCATTTTTATTTATAAGGAT-ACT-CG-------TAATGGTTTTTT-GTCAGACTTTGA-----------------------tcgcgatatatatccgtagtcaaaaacgatacttcgtacctgtctaacctttttccgtaggaaataaacaatgagggacagggtgtgtaagataacaccccaccccgtaggtctcgattacaaaatattttcgtgtaagttttatgaataattcagaataaaagtggaaaaggtatacggaatgcatttttatttataaggatactcgtaatggttttttgtcagactttga
gi|4 : cttccggaattctaaattatacatttttggtttaattttatgcaatttttaaaataaatacgcaccgtaaaattatatattaattatttcttaaccgataaacgatactattttgatcaaaaattaacgttttctgtcaaataaacactttaatgaataccgagaacgaggcttccaaaataagcacctggatgtgcgtgtatgttataactgtgcagtcggcatgtttttaacaaacaagggaggagtggcaatgttgacttggcttgccgtctgatatcgcatacgataataacagtctatggtttagtcgtattacacatatcagacggcaggccagtctaatagtgcatgaagtgaaagagaagaaaattgtgttccgcgtagtgggtttaatgccaatacacacggatccacaaagacccaacatcaaagggaaaccgcgcactccagacacacgagatatatctgaaagaaaatttaataatcgaacctatttgtttgtttgttttgtttgttgttttttagtttgaattttctttttatctgttcatgatattaataactctcttaaaatgttcgcacccccctctctctctctacattgaatgaat-GG--GA--GGGTGTGTA-GATAATATCCCCCCCCCCCCCCCCCCG-GAGTTTATGT-CAAGCG-CATCGATTACACAATATTTTCGTGTAAGTTTTA-TAAATAA----------C------------------AGTG----------GAAAG-GTTACAGAGATGGCATTTT-------------------------AT-ATT-TGATAAGATTAATGGTTTTTTTGTAAGACTTTGA-----------------------ACTTGTA-------------G-------------TTTTA---GCATT-TCATT----------ACGTGCTGTTTAAAC-TA-ACCGGATTCTTATATTTGT-CGATAAGCTCGGAAGTC-----A-----TGAAAAAACTTACATTATCAT-T-TA---CGAC-ATATAATAATCGTCT----TGTTCATTATAAAAAA--AA-AAAT-GACCCTTCT----CTGTG-CG-GC-ACGTGTCG---G----------GAAAAGGGTAGCGACAGAG-CCCGGGTGGAATAT--TACTAGAATTAAGAC-C-----G----C-ATT---CGAGCGAAACCCAGATTT--G-GC-GCTTCATTTTGAAG---TCTT-TAACCAAGTTATACAACACAAAAGTAAAAAAGTA-AAACATGTCAAGTTTTTCTTAAG-CTCTT-TAATGGACTTTTGAT---ATGAAGGTATGGTAACAC
gi|5 : gcagGGAAGT--AGAT-ACA-CATTTTT--G-TATCATTT---ATGC-ATTT-TT-AAAAA---TTAAATAC-AACGATAAAA-TTAGT-T-TCAATTA-TTCTTAACCGATAA-CGATA-TATATTGA-CATAAAAA-TAA-------CGTTTT---CCGT-AA-ATGAA---AT-ACCTTT---G-ATTACC----TAGTAACGATG------GCTTCAAAA-TCAA-CAGC-CAGGATGTGA--C--AT----TA--TTAC--C---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGAAGAGAGT-GGCATG--TTGACTG-GGTTAAGCCGTTTTGATACTCTGCTACTTACGATAAA--CAG--T-TGTT-AGC-GTAA---TACTAC--AAATATT--A------TA-GCACAGGCAGTCT-----AA-G---AGTGAC--C------AT-GG-AG-TG--A-A-AG-C-A-G-AGAA-AATTATATAAA---CG--ACGAG-ATCT-C---GTGT-TCCCATG-GTTAAGTTCGGTTTTAATAGCCAAT-AC----ACA----CGG------ATC-CAC-AAAGAC--CC-GCATTCAAAGGCAC--CC-GCGC----CA----CT------CCAGACA----------ACGACGATTAAT--ATCTG--AAAG-AAAAATTTACAA-ATCGAAACCCC----ATTCTTAATATTCTATTT-GTTTGTT-TTT-TCT-TGTTTTG-TTTTT--A--TTG--AATTTTCTTTTTA-CT-TTTATTA-TATATAATAAGACATTCATAAAATTTCC---CCCCCCC-CCT-----CTCTCTCTCTC-TACATTGGAA-TG-A--TAACAA-TGATTA--AACAATG-AAAAA-------------A-TA--C-TGCTAAATATAAGTCGCGGAGATATAT-CTGATA--TCAAAACAGATA-CTT-C-TGCCT--GTCATAACCCCTTTT-CCG-TAG----AAGTTAAA------------CAGAacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttccacatggcatagtcagatagtacttcaagtacaattcaattcttattggaccaaattaagtgcccccaaagggcaatatgaaggtgtacaatggtataacatcccgttgttgcacgtgctagaggacaattgtgaataacacaggtgt
gi|6 : tccaGAGCC--AAAT-AT--CATTTTTTGG-T-TTATTT-TA-TGCCATTTGTTGAAAAA---T-AAATACCAATT----AA-TTG-T-C-TTAATTA-TTCT-------TAAACGATA-TAT-TTGA-CA--AAAA-TAAATAGTGTAGTTGTGCACC-T-AATAT-TATCCAC-ACTTTTCATG-AT-AAC----TGAGAACGGTGGAGGCTGTTGCAAAATATAA-G-ACAC-GGATGTGGAAC--GTTCCATATTTTATTCA---AC--TGTA-CG
gi|6 : gaaCATGCT----CAA-AGAAAAGAAAAGTGCACATAT-GG-AGGTGTGA-AGAG-AGA-T-AGAA-AA--AAATAAAAACCGTAAGGAG-AT-G-CGGGGTGTATCC-CTGCGT--AGT--GGCTTT-TT-GCCAATCACATCTACA----CGG------ATC-CTCAAAAGACAACCAAACTTAAA-GGGAACTCT-GCGC----CAACAGTTTTCGTACTAACCAT-------TCATGA-GAT--AT--ATCTG--AAAGttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaacatgctcaaagaaaagaaaagtgcacatatggaggtgtgaagagagatagaaaaaaataaaaaccgtaaggagatgcggggtgtatccctgcgtagtggctttttgccaatcacatctacacggatcctcaaaagacaaccaaacttaaagggaactctgcgccaacagttttcgtactaaccattcatgagatatatctgaaag
gi|7 : gaagagccaaatatcattttttggtttattttatgccatttgttgaaaaataaataccaattaattgtcttaattattcttaaacgatatatttgacaaaaataaatagtgtagttgtgcacctaatattatccacacttttcatgataactgagaacggtggaggctgttgcaaaatataagacacggatgtggaacgttccatattttattcaactgtacgttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaaATG--G-AGAG-A-AAG-AGAA-GA--AAATAAA---CG--AAGAT-ATCT-C---GTGT-TTCGC---AT--AGT--GGCTTTATT-GCCAAT-AT----ACA----CGG------ATC-CAC-AAAGAC--CCAACATCAAAGGGAAC--CC-GTG-----CA----CT------CCAGAC---------ACACGA-GAT--AT--ATCTG--GAAAAAAAA---TACTA-ATCG-AACCCC----ACTCTTTGT-TTTTTTTTCAATTTTC---T-TTT-TA-TCTG--TTTATGATATTGATAATTTCTCCTTTCTTT---------------------CTCTCTTAAAATTTT--CACCCC--------------CTCTCTTTC-TACATT------------------TTA--A--AGCAATGAAAAAAAAA--TATCG-ACA-AA--CTTGCTAAATATA--TC-C---G-TATATTCC--------AAAAC-GATG-CCT-CGTGCCC--
gi|7 : gagtgcCCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTAAAAATCCATATGTA-------------TTTTTTT-GCATTATTATTTACCCAacccgtaagtttatgtcaagcggcatcgattacacaaaattttcatgtacgttttatgaataaacagtggaaaaggtatacggagtgcatttttattgataagtacgtatactcgtaatggtattttgtcagacttggaacttttaaaaatccatatgtatttttttgcattattatttaccca
gi|8 : gagtgcatggagagaaagagaagaaaataaacgaagatatctcgtgtttcgcatagtggctttattgccaatatacacggatccacaaagacccaacatcaaagggaacccgtgcactccagacacacgagatatatctggaaaaaaaatactaatcgaaccccactctttgtttttttttcaattttctttttatctgtttatgatattgataatttctcctttctttctctcttaaaattttcaccccctctctttctacattttaaagcaatgaaaaaaaaatatcgacaaacttgctaaatatatccgtatattccaaaacgatgcctcgtgCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTA-------------AAAATCCATATGTATTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA------CCG-ACTTTTAT-TTTTTTCGATAAGCTCGGAATTC-----ACGAAAT----AAACTTACAATATCATGT-AC---CGACTATA--ATAATCGTTT-------------------------GAAT-GATCCTTCT----CTG-GGCG-GT-AC----CG---A----------GA------------C-GAGGCCCGGGTGGAAT----TA---GATCTAAGAC-TCGTCTG---GC-ATT---CGAGCGAAACCCTGATTT--TCGCCGCTTCATC--GAAGAGATATG--AATAAAGT-CTGTAAC-C-AAG-TATAAAA--A-AA----GTCAAG-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCGCTGAATAGTCAATAAGTACTATACAAGATACAATTCAATTCGTTATATGATCAAATTTTTTCCCAATAAAAATAGGGCAATAAGAAGGTGTAACCAACTAGTTAAGCATCCCGTGTTGGCACGTCGGCCTTGATAAATAACCAGGTGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 11 1111111 1111 111 111 111111 11 2222222 111 111 11 222222 33333333 22222222 6666666666666666 222222 11 11 11111 11 333 11 1 3333 1 11 3333333333 111 1111 22222 1 6666666666666666666666666666666666666666666 1111 111 1111 111 22222 1111 1111 111111 11 2222222222222222222 3333333333 1 1111 11111 2 11 1111111 222222222222222222 222222222 222222222222 11 1 1 11 11 111 1 55555555 11 1 11 1 1 1111 555555555555555555 1 1 222222 44444444444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 999999999999999999999999999999999999999999999999999999999 1111111 44444444444 1 1 1 5555555555555555 22222222 1 11 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 2 111111 111 333333333333 1 111 2222 11 333 1 1 22222222222 2222 111
lowQualScore : 1 33 0 33 8888888 7777 8 8 8 444 8 5 3 8 8 000 8 0 7777777 5 444444 8 11 88 6666666 444 8 8 8 444 8 11 8 8 222222 88888888 8 22222222 0 3333333333333333 000000 11 6 11 88 999 55555 0 0 8 88 999 88 3 0000 0 22 55 55 5555555555 777 9 6666 66666 55 0 0 9999999999999999999999999999999999999999999 6666 1 888 000 6 99 4444 99 1 99 2 6 111 5 44444 77 77 0 1 5 5 2222 2222 5 666666 5 5 5 33 1 8 1 0 77 5 5555555555555555555 5555555555 5 77 77 99 3 777 1 8 5 0 7777 77777 0 1 88 8 8 11 88 22 1111111 1 666666666666666666 77 1 555 0 888888888 5 5 5 1 77 444444444444 8 0 33 0 0 33 3 0 55 444 0 0 0 00000000 8 8 8 11 0 33 0 0 7777 555555555555555555 3 7 0 000000 3 3 3 1 66666666666 99 2 7 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 6 1111111 1 6 1 222222222222222222222222222222222222222222222222222222222 999 0 5 9999999 3 88888888888 0 3 0 0 2 1 9999999999999999 3 88888888 0 33 2 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0 444444 777 1 999999999999 0 777 1 5555 11 000 0 88 5 88 3 0 0 99 1 11111111111 8 0 6 2222 88 444 8 8
lowQualScore : . .. . .. ....... .... . . . ... . . . . . ... . . ....... . ...... . .. .. ....... ... . . . ... . .. . . ...... ........ . ........ . ................ ...... .. . .. .. ... ..... . . . .. ... .. . .... . .. .. .. .......... ... . .... ..... .. . . ........................................... .... . ... ... . .. .... .. . .. . . ... . ..... .. .. . . . . .... .... . ...... . . . .. . . . . .. . ................... .......... . .. .. .. . ... . . . . .... ..... . . .. . . .. .. .. ....... . .................. .. . ... . ......... . . . . .. ............ . . .. . . .. . . .. ... . . . ........ . . . .. . .. . . .... .................. . . . ...... . . . . ........... .. . . . . ............................................................................................. . . ....... . . . ......................................................... ... . . ....... . ........... . . . . . . ................ . ........ . .. . . ........................................................................................... . . ...... ... . ............ . ... . .... .. ... . .. . .. . . . .. . ........... . . . .... .. ... . .
lowQualScore : 0 88 0 22 0000000 6666 0 0 0 000 0 0 2 0 0 000 0 8 4444444 6 888888 0 00 88 0000000 000 0 0 0 000 0 88 0 0 000000 44444444 0 66666666 8 2222222222222222 888888 00 7 00 88 222 00000 8 8 0 33 000 33 3 2222 0 55 88 88 2222222222 555 8 5555 22222 00 0 2 3333333333333333333333333333333333333333333 0000 0 333 222 7 22 8888 22 5 22 5 7 777 7 33333 99 99 7 0 7 7 1111 1111 7 444444 7 7 7 66 7 4 7 4 99 7 7777777777777777777 7777777777 7 99 99 22 6 000 4 0 6 8 0000 66666 0 4 88 0 0 22 88 22 4444444 4 555555555555555555 99 7 111 7 444444444 7 7 7 4 99 666666666666 0 8 88 0 0 88 2 8 66 000 8 8 8 44444444 0 0 0 00 0 88 0 0 2222 888888888888888888 3 3 0 888888 2 2 2 2 22222222222 22 5 8 0 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 7 7777777 0 7 0 333333333333333333333333333333333333333333333333333333333 888 8 6 1111111 2 88888888888 0 2 0 0 5 0 8888888888888888 2 00000000 0 88 5 8 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 222222 555 0 000000000000 0 555 0 0000 00 888 6 88 0 66 6 6 8 00 4 44444444444 0 6 4 2222 88 000 0 0
consensus : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---C--GT---ATA--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TATTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A-A-G-AGAA-AA--AAATAAA---CG--AAGAG-ATCT-C---GTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----C-G------GA-TC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAGACAT-------ACACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGA-TAT-TAATA--ACTCTCTTAAAATTTTCGCACCCCCCC-CCT-----CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-AA-TTA-TA--AGCAATG-AAAAAAAA--TATCG-ACA-TA--CTTGCTAAATATAAGTCGC---GATATATACCGATA--CAAAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCATC--GAAGAGATATG-TAACCAAGT-ATATAACACAAAN-TAAAAAAGTA-AA-CATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
Reference ( family-34 ) : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---C--GT---ATA--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TATTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A-A-G-AGAA-AA--AAATAAA---CG--AAGAG-ATCT-C---GTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----C-G------GA-TC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAGACAT-------ACACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGA-TAT-TAATA--ACTCTCTTAAAATTTTCGCACCCCCCC-CCT-----CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-AA-TTA-TA--AGCAATG-AAAAAAAA--TATCG-ACA-TA--CTTGCTAAATATAAGTCGC---GATATATACCGATA--CAAAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCATC--GAAGAGATATG-TAACCAAGT-ATATAACACAAAN-TAAAAAAGTA-AA-CATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
gi|1 : CCGGAAGT--AAAT-ATAACATTTT---G-T-TTATTTGTAATGC-ATTT-TT-AAAAAAAAT-AAATACCAACCGTAAAAATTA-T-T-TCAATTA-T-CTTAACCGATAAACGAT--CATATTGA-CA--AAA--TAA-------CGTTTT---CCGT-AA-AT-AA---ACCACCTTT-GTG-AT-ACCACCACGAAAACGA--------GCTTCAAAA-ATAAAC-GC-C-GGA-GTG---A--A----ACAG-TCAT--ACCGAC--TCCA-TGTGCAAGGTG-TTTTAAAT-AACATACAGTG-GAGAGT-GCAATGCCTTGAC---GCTT--GCCG-TCTGATAT---TC-GCAT-CGATAAAACCAGTCT-TATTCATCGGTCA---TAT-AT--CGATACC--ACAACGGCG-GAACAGACATTCT----CAA-G---AAGAATAGC------ATCGGTAGATG--ATAAAG-A-A-GTAGCG-AA--ATATAA----CG--AAGAG-ATCTGC---GTGT-TCCGCCG-GT--AGT--GAGTTTAAT-GCCAAT-AC----ACA----C-G------GAATC-CAA-CAAGACT-CCAACAACAAAAGGGAA--CC-GTGCGCATCA----CT------CCAGACATTTCACATACACGA-GAT--AACAATCTA--AAAGGAGAAATTTACAA-ATC--AACCCC----ATTCTTTAT-ATCTATTT-GTTTATC-TGTATTT-TATTTCC-TTTTTTAAT-TTG--AATTTCCCATTTATCTGTTTATGAATAT--AATA--AC---CTTAAAATTTTCGCACCCACCCACCT-----CTCTCTCTCTCCTACATT-GAA-TGAA--TAA-AAATTA-TACAAGCAATA-AAAAAAAAAATATCG-ACAATAATCTTGCTAAATA-AATTCGC---GATATATACCGATATACAAAAAC-GATAACTT-CGTGCCT--GTC-TAA--CCCTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAA-GA-GG--G---GGGTGTGTAAGAT--TA----------CCCCCCCCGGTAAGTTTATGTCCAAGCGGCATCGATTACACAATA-TTTCGTCTAAG-TTTA-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACTCCG-------T-ATAGCTTTTT-GTCAGACTTTGA-----------------------ACTTGTA-------------G-------------CTTTCTA-GCA---------------TTCATGTGCTGT---AAAGTAGACCG-ATTTTTAT-TTTTT-CAACAAGCTCGGAAGTC-----A-----T----AAACTTACAATATCATGTATATTCCGAC-ATA--ATAATCGTTTGATATCTT-----------ATCAATAAATCCACCCTTCTTGTGCCG-G-CACGT-GT----CGTGTAAAAAGGGTTCGA------------C-GAGTCCCGGGTGGAATATACTA---GAATTAAGAC-C-----G---GCAATTTCCCGAGCGAAACCCAGATTT--G-GCCGCTTCATT--GAAG---TCTG-TAACCAAGT-ATA-AACACAAAC-CAAAAA--TA-AA-CAT-TCAAG-TTTTCTTAAGCCTCTT-TAATGGAC---TGATGTGATGAA-GTATGGT-CCAC
gi|10 : ATGC-ATTT-TT-AATAA---T-AAATTCCAACCGTAAAA-TTA-T-T-TCAATTA-TT------------------------TGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-A-C----CGAGAACGA-G------GCTTCAAAA-ATAA-C-AC-C-AGATGTG------AC---ATA--TTAT--A---AC--TGCA-TAGGCA--GTG--TTTAA-C-AACA---A-GGAGATAGT-GC
gi|11 : CTGTTTATGA-TAT-TAATA--ACTCTCTTAAATTTTTCGCACCCCCCC-CCCCCTCACTCTCTCTCTC-TACATT-GAACTGAA--TAATAA-TTT-AA--AGCAATG-AAAAAAA
gi|12 : CGCTTCATT--GAAG---TATG-TAACCAAGT-ATA--ACACAAAC-AAAAAAAGTAGAA-CATGTCAAG-TTTTCTTAAGC-TCAT-TAATGGAC-TTTGAT---ATGAA-GAATGGT-ACA
gi|13 : TGT-TCTA-TG-GC---GT--GTGTGTATT-GCCAAT-AC----ACAGTGTC-GTACGTAGA-TT-CAC-GTAGAC--CCTAT-TCATAGGGAAA---C-GCG-----CA----CC------TTATGTAT-------ACA--A-CAT--AT--AT
gi|14 : AATA--ACTCTCTTAAAAATTTCGCACCCTCCC-A---------CTCTCTCTC-TACATT-GAA-TGAA--TAA-
gi|15 : TTG-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-At
gi|16 : CA-TGGACA--GTT-TTTTAA-C-AACA---A-GGAGAGAGT-GCAaggattgagtgcatttatttat
gi|2 : accacccATAC---AC-GCA--CGATAGAACCGATAT--ATA-AT--GTCAAGATATAACTTCGGTACTGTACCACCCCATGGACAG---TTTTACAACAACG---GAGAAGTGC------AT-G-----TG--AGAGAG-A-A-A-AGAAGAA--AAATAAA---CG--AAGATTATCT-C---GATT-TTCGC---AT--AGT--GGGCTTATT-GC-AAT-AT----ACA----CCG------GA-TCACAC-AGAACT--CCAAC-TCAAAGGAGAA--CCCGTGC-----A----CT------CCAGACAC--------TACGA-GAT--AT--ATCTGGAAAAAAAAAAA---ACTATATCGAAACCCCTCGTATTTTTCTT-TTCAATTTCTTTTATCATGT-TTA-TA---TGATATATTGAT------AATTTCTCCTTT-----TT------------------CTCTCTTAAAATTT---CA----CCC-CCT-----CTCTTTC------ACA-T-GAA-TGAACTTAA-AA-TTT-AA--AGCAATG-AAAAAAAA--TATCGAACA-TA--CTTGCTAAATATA--TCGT---CATAT---CC--------AAAAC-GATG-CCTACGTGCCCTGGTG-TAA--CTTTTT-CCGTTAGAAATAAA-TAAAGTCATTTCTTATCAGATAAATCAATGATGGGTGA--GGGTG-GTAAGATAAAA------------ACACCTCGTAAGTTTATGT--AAGCGGCATCGATTACACAA-ATTTTCA-GCACGTTTTATTGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACtg
gi|2 : atattAAGA-AC----------G-----T-------------------------ATTACT-CG-------TAATGGTATTTT-GTCAGACTTGGAACTTTTAAAAATCGCATATGTAAACTTTTA-------------A-------------TTTTTTTTGCATTATTATT-ACCCACTTCATG-GCTGT---A---TA-CACG-ACTTT-AT-TTTTT-CGATAAGCTCG-AATTCCACGAA-----A----AAACT-ACAATATCAT-T-TA---CGAC-TAA--ATAAA---------TCTT-----------G--AA----T-TGTCCTTCT----CGG-G-CG-GGGAC----CG---A----------GA------------C-GAG-CCCGGGTGGA--AT--TA---GATCTAAGACTC-----GTCTGC-ATT---CGAGCGAAACCCTGATTTTCGCGCCGCATCATC--GAAGAGATATGATAAC--AGT-CTATAAC-CAAGT-TATAAAA--A-A-----GTCGAA-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ggagctgcattttttgatacaagaacgtattactcgtaatggtattttgtcagacttggaacttttaaaaatcgcatatgtaaacttttaattttttttgcattattattacccacttcatggctgtatacacgactttattttttcgataagctcgaattccacgaaaaaactacaatatcatttacgactaaataaatcttgaattgtccttctcgggcggggaccgagacgagcccgggtggaattagatctaagactcgtctgcattcgagcgaaaccctgattttcgcgccgcatcatcgaagagatatgataacagtctataaccaagttataaaaaagtcgaattttcttcagcttcttcttggactttgatatgaagtatggtaacc
gi|3 : atattatacacgcacgatagaaccgatatataatgtcaagatataacttcggtactgtaccaccccatggacagttttacaacaacggagaagtgcatgtgagagagaaaagaagaaaaataaacgaagattatctcgattttcgcatagtgggcttattgcaatatacaccggatcacacagaactccaactcaaaggagaacccgtgcactccagacactacgagatatatctggaaaaaaaaaaaactatatcgaaacccctcgtatttttcttttcaatttcttttatcatgtttatatgatatattgataatttctcctttttctctcttaaaatttcaccccctctctttcacatgaatgaacttaaaatttaaagcaatgaaaaaaaatatcgaacatacttgctaaatatatcgtcatatccaaaacgatgcctacgtgccctggtgtaactttttccgttagaaataaataaagtcatttcttatcagataaatcaatgatgggtgagggtggtaagataaaaacacctcgtaagtttatgtaagcggcatcgattacacaaattttcagcacgttttattgaataaacagtggaaaaggtatacggagctgcattttttgatacCCGGAATTCTAAATTATA-CATTTTT--GGT-TTAATT-TTATGC-AATT-TT-TAAAA---T-AAATACGCACCGTAAAA-TTA-TATATTAATTATTTCTTAACCGATAAACGATACTATTTTGATCA--AAAATTAA-------CGTTTT---CTGTCAA-AT-AA---AC-ACTTTA-ATGAAT-A-C----CGAGAACGA-G------GCTTCCAAA-ATAAGC-AC-CTGGATGTG---CGTGT---ATG--TTAT--A---ACTGTGCAGTCGGCA---TGTTTTTAA-CAAACA---AGGGAG-GAGTGGCAATG--TTGACTTGGCTT--GCCG-TCTGATAT----C-GCATACGATAATAACAGTCTATGGT--TTAGTCG---TATTAC--ACATATC--A-GACGGCA-GGCCAG----TCT---------------AATA------------GTGCATG--A-AGTGAA-A-G-AGAA-GA--AAA--------------------T-T---GTGT-TCCGC---GT--AGT--GGGTTTAAT-GCCAAT-AC----ACA----C-G------GA-TC-CAC-AAAGAC--CCAACATCAAAGGGAAA--CC-GCG-----CA----CT------CCAGAC---------ACACGA-GAT--AT--ATCTG--AAAG--AAAATTTAATA-ATCGAA--------------------CCTATTT-GTTTGTT-TGT-TTTGTTTGTTG-TTTTTTAGT-TTG--AATTTTCTTTTTATCTGTTCATGA-TAT-TAATA--ACTCTCTTAAAATGTTCGCACCCCC-----------CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-----TA-TA--AGacc
gi|3 : cttAATATAAGTCGC---GATATATATCCGTAGTCAAAAAC-GATA-CTT-CGTACCT--GTC-TAA--CCTTTTTCCG-TAGGA--AA----------------------TAAA-CAATGA-GG--GACAGGGTGTGTAAGATAACA----------CCCCACCCCGTAGGTCT---------------CGATTACAAAATATTTTCGTGTAAGTTTTA-TGAATAATTCAGAATAAA------------------AGTG----------GAAAAGGT----------A-----TACGGAATGCATTTTTATTTATAAGGAT-ACT-CG-------TAATGGTTTTTT-GTCAGACTTTGA-----------------------tcgcgatatatatccgtagtcaaaaacgatacttcgtacctgtctaacctttttccgtaggaaataaacaatgagggacagggtgtgtaagataacaccccaccccgtaggtctcgattacaaaatattttcgtgtaagttttatgaataattcagaataaaagtggaaaaggtatacggaatgcatttttatttataaggatactcgtaatggttttttgtcagactttga
gi|4 : cttccggaattctaaattatacatttttggtttaattttatgcaatttttaaaataaatacgcaccgtaaaattatatattaattatttcttaaccgataaacgatactattttgatcaaaaattaacgttttctgtcaaataaacactttaatgaataccgagaacgaggcttccaaaataagcacctggatgtgcgtgtatgttataactgtgcagtcggcatgtttttaacaaacaagggaggagtggcaatgttgacttggcttgccgtctgatatcgcatacgataataacagtctatggtttagtcgtattacacatatcagacggcaggccagtctaatagtgcatgaagtgaaagagaagaaaattgtgttccgcgtagtgggtttaatgccaatacacacggatccacaaagacccaacatcaaagggaaaccgcgcactccagacacacgagatatatctgaaagaaaatttaataatcgaacctatttgtttgtttgttttgtttgttgttttttagtttgaattttctttttatctgttcatgatattaataactctcttaaaatgttcgcacccccctctctctctctacattgaatgaat-GG--GA--GGGTGTGTA-GATAATATCCCCCCCCCCCCCCCCCCG-GAGTTTATGT-CAAGCG-CATCGATTACACAATATTTTCGTGTAAGTTTTA-TAAATAA----------C------------------AGTG----------GAAAG-GTTACAGAGATGGCATTTT-------------------------AT-ATT-TGATAAGATTAATGGTTTTTTTGTAAGACTTTGA-----------------------ACTTGTA-------------G-------------TTTTA---GCATT-TCATT----------ACGTGCTGTTTAAAC-TA-ACCGGATTCTTATATTTGT-CGATAAGCTCGGAAGTC-----A-----TGAAAAAACTTACATTATCAT-T-TA---CGAC-ATATAATAATCGTCT----TGTTCATTATAAAAAA--AA-AAAT-GACCCTTCT----CTGTG-CG-GC-ACGTGTCG---G----------GAAAAGGGTAGCGACAGAG-CCCGGGTGGAATAT--TACTAGAATTAAGAC-C-----G----C-ATT---CGAGCGAAACCCAGATTT--G-GC-GCTTCATTTTGAAG---TCTT-TAACCAAGTTATACAACACAAAAGTAAAAAAGTA-AAACATGTCAAGTTTTTCTTAAG-CTCTT-TAATGGACTTTTGAT---ATGAAGGTATGGTAACAC
gi|5 : gcagGGAAGT--AGAT-ACA-CATTTTT--G-TATCATTT---ATGC-ATTT-TT-AAAAA---TTAAATAC-AACGATAAAA-TTAGT-T-TCAATTA-TTCTTAACCGATAA-CGATA-TATATTGA-CATAAAAA-TAA-------CGTTTT---CCGT-AA-ATGAA---AT-ACCTTT---G-ATTACC----TAGTAACGATG------GCTTCAAAA-TCAA-CAGC-CAGGATGTGA--C--AT----TA--TTAC--C---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGAAGAGAGT-GGCATG--TTGACTG-GGTTAAGCCGTTTTGATACTCTGCTACTTACGATAAA--CAG--T-TGTT-AGC-GTAA---TACTAC--AAATATT--A------TA-GCACAGGCAGTCT-----AA-G---AGTGAC--C------AT-GG-AG-TG--A-A-AG-C-A-G-AGAA-AATTATATAAA---CG--ACGAG-ATCT-C---GTGT-TCCCATG-GTTAAGTTCGGTTTTAATAGCCAAT-AC----ACA----C-G------GA-TC-CAC-AAAGAC--CC-GCATTCAAAGGCAC--CC-GCGC----CA----CT------CCAGACA----------ACGACGATTAAT--ATCTG--AAAG-AAAAATTTACAA-ATCGAAACCCC----ATTCTTAATATTCTATTT-GTTTGTT-TTT-TCT-TGTTTTG-TTTTT--A--TTG--AATTTTCTTTTTA-CT-TTTATTA-TATATAATAAGACATTCATAAAATTTCC---CCCCCCC-CCT-----CTCTCTCTCTC-TACATTGGAA-TG-A--TAACAA-TGATTA--AACAATG-AAAAA-------------A-TA--C-TGCTAAATATAAGTCGCGGAGATATAT-CTGATA--TCAAAACAGATA-CTT-C-TGCCT--GTCATAACCCCTTTT-CCG-TAG----AAGTTAAA------------CAGAacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttccacatggcatagtcagatagtacttcaagtacaattcaattcttattggaccaaattaagtgcccccaaagggcaatatgaaggtgtacaatggtataacatcccgttgttgcacgtgctagaggacaattgtgaataacacaggtgt
gi|6 : tccaGAGCC--AAAT-AT--CATTTTTTGG-T-TTATTT-TA-TGCCATTTGTTGAAAAA---T-AAATACCAATT----AA-TTG-T-C-TTAATTA-TTCT-------TAAACGATA-TAT-TTGA-CA--AAAA-TAAATAGTGTAGTTGTGCACC-T-AATAT-TATCCAC-ACTTTTCATG-AT-AAC----TGAGAACGGTGGAGGCTGTTGCAAAATATAA-G-ACAC-GGATGTGGAAC--GTTCCATATTTTATTCA---AC--TGTA-CG
gi|6 : gaaCATGCT----CAA-AGAAAAGAAAAGTGCACATAT-GG-AGGTGTGA-AGAG-AGA-T-AGAA-AA--AAATAAAAACCGTAAGGAG-AT-G-CGGGGTGTATCC-CTGCGT--AGT--GGCTTT-TT-GCCAATCACATCTACA----C-G------GA-TC-CTCAAAAGACAACCAAACTTAAA-GGGAACTCT-GCGC----CAACAGTTTTCGTACTAACCAT-------TCATGA-GAT--AT--ATCTG--AAAGttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaacatgctcaaagaaaagaaaagtgcacatatggaggtgtgaagagagatagaaaaaaataaaaaccgtaaggagatgcggggtgtatccctgcgtagtggctttttgccaatcacatctacacggatcctcaaaagacaaccaaacttaaagggaactctgcgccaacagttttcgtactaaccattcatgagatatatctgaaag
gi|7 : gaagagccaaatatcattttttggtttattttatgccatttgttgaaaaataaataccaattaattgtcttaattattcttaaacgatatatttgacaaaaataaatagtgtagttgtgcacctaatattatccacacttttcatgataactgagaacggtggaggctgttgcaaaatataagacacggatgtggaacgttccatattttattcaactgtacgttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaaATG--G-AGAG-A-AAG-AGAA-GA--AAATAAA---CG--AAGAT-ATCT-C---GTGT-TTCGC---AT--AGT--GGCTTTATT-GCCAAT-AT----ACA----C-G------GA-TC-CAC-AAAGAC--CCAACATCAAAGGGAAC--CC-GTG-----CA----CT------CCAGAC---------ACACGA-GAT--AT--ATCTG--GAAAAAAAA---TACTA-ATCG-AACCCC----ACTCTTTGT-TTTTTTTTCAATTTTC---T-TTT-TA-TCTG--TTTATGATATTGATAATTTCTCCTTTCTTT---------------------CTCTCTTAAAATTTT--CACCCC--------------CTCTCTTTC-TACATT------------------TTA--A--AGCAATGAAAAAAAAA--TATCG-ACA-AA--CTTGCTAAATATA--TC-C---G-TATATTCC--------AAAAC-GATG-CCT-CGTGCCC--
gi|7 : gagtgcCCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTAAAAATCCATATGTA-------------TTTTTTT-GCATTATTATTTACCCAacccgtaagtttatgtcaagcggcatcgattacacaaaattttcatgtacgttttatgaataaacagtggaaaaggtatacggagtgcatttttattgataagtacgtatactcgtaatggtattttgtcagacttggaacttttaaaaatccatatgtatttttttgcattattatttaccca
gi|8 : gagtgcatggagagaaagagaagaaaataaacgaagatatctcgtgtttcgcatagtggctttattgccaatatacacggatccacaaagacccaacatcaaagggaacccgtgcactccagacacacgagatatatctggaaaaaaaatactaatcgaaccccactctttgtttttttttcaattttctttttatctgtttatgatattgataatttctcctttctttctctcttaaaattttcaccccctctctttctacattttaaagcaatgaaaaaaaaatatcgacaaacttgctaaatatatccgtatattccaaaacgatgcctcgtgCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTA-------------AAAATCCATATGTATTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA------CCG-ACTTTTAT-TTTTTTCGATAAGCTCGGAATTC-----ACGAAAT----AAACTTACAATATCATGT-AC---CGACTATA--ATAATCGTTT-------------------------GAAT-GATCCTTCT----CTG-GGCG-GT-AC----CG---A----------GA------------C-GAGGCCCGGGTGGAAT----TA---GATCTAAGAC-TCGTCTG---GC-ATT---CGAGCGAAACCCTGATTT--TCGCCGCTTCATC--GAAGAGATATG--AATAAAGT-CTGTAAC-C-AAG-TATAAAA--A-AA----GTCAAG-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCGCTGAATAGTCAATAAGTACTATACAAGATACAATTCAATTCGTTATATGATCAAATTTTTTCCCAATAAAAATAGGGCAATAAGAAGGTGTAACCAACTAGTTAAGCATCCCGTGTTGGCACGTCGGCCTTGATAAATAACCAGGTGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 11 1111111 1111 111 111 111111 11 2222222 111 111 11 222222 33333333 22222222 6666666666666666 222222 11 11 11111 11 333 11 1 3333 1 11 3333333333 111 1111 22222 1 6666666666666666666666666666666666666666666 1111 111 1111 111 22222 1111 1111 111111 11 2222222222222222222 3333333333 1 1111 11111 2 11 1111111 222222222222222222 222222222 222222222222 11 1 1 11 11 111 1 55555555 11 1 11 1 1 1111 555555555555555555 1 1 222222 44444444444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 999999999999999999999999999999999999999999999999999999999 1111111 44444444444 1 1 1 5555555555555555 22222222 1 11 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 2 111111 111 333333333333 1 111 2222 11 333 1 1 22222222222 2222 111
lowQualScore : 1 33 0 33 8888888 7777 8 8 8 444 8 5 3 8 8 000 8 0 7777777 5 444444 8 11 88 6666666 444 8 8 8 444 8 11 8 8 222222 88888888 8 22222222 0 3333333333333333 000000 11 6 11 88 999 55555 0 0 8 88 999 88 3 0000 0 22 55 55 5555555555 777 9 6666 66666 55 0 0 9999999999999999999999999999999999999999999 6666 1 888 000 6 99 4444 99 1 99 2 6 111 5 44444 77 77 0 1 5 5 2222 2222 5 666666 5 5 5 33 1 8 1 0 77 5 5555555555555555555 5555555555 5 77 77 99 3 777 1 8 5 0 7777 77777 0 1 88 8 8 11 88 22 1111111 1 666666666666666666 77 1 555 0 888888888 5 5 5 1 77 444444444444 8 0 33 0 0 33 3 0 55 444 0 0 0 00000000 8 8 8 11 0 33 0 0 7777 555555555555555555 3 7 0 000000 3 3 3 1 66666666666 99 2 7 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 6 1111111 1 6 1 222222222222222222222222222222222222222222222222222222222 999 0 5 9999999 3 88888888888 0 3 0 0 2 1 9999999999999999 3 88888888 0 33 2 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0 444444 777 1 999999999999 0 777 1 5555 11 000 0 88 5 88 3 0 0 99 1 11111111111 8 0 6 2222 88 444 8 8
lowQualScore : . .. . .. ....... .... . . . ... . . . . . ... . . ....... . ...... . .. .. ....... ... . . . ... . .. . . ...... ........ . ........ . ................ ...... .. . .. .. ... ..... . . . .. ... .. . .... . .. .. .. .......... ... . .... ..... .. . . ........................................... .... . ... ... . .. .... .. . .. . . ... . ..... .. .. . . . . .... .... . ...... . . . .. . . . . .. . ................... .......... . .. .. .. . ... . . . . .... ..... . . .. . . .. .. .. ....... . .................. .. . ... . ......... . . . . .. ............ . . .. . . .. . . .. ... . . . ........ . . . .. . .. . . .... .................. . . . ...... . . . . ........... .. . . . . ............................................................................................. . . ....... . . . ......................................................... ... . . ....... . ........... . . . . . . ................ . ........ . .. . . ........................................................................................... . . ...... ... . ............ . ... . .... .. ... . .. . .. . . . .. . ........... . . . .... .. ... . .
lowQualScore : 0 88 0 22 0000000 6666 0 0 0 000 0 0 2 0 0 000 0 8 4444444 6 888888 0 00 88 0000000 000 0 0 0 000 0 88 0 0 000000 44444444 0 66666666 8 2222222222222222 888888 00 7 00 88 222 00000 8 8 0 33 000 33 3 2222 0 55 88 88 2222222222 555 8 5555 22222 00 0 2 3333333333333333333333333333333333333333333 0000 0 333 222 7 22 8888 22 5 22 5 7 777 7 33333 99 99 7 0 7 7 1111 1111 7 444444 7 7 7 66 7 4 7 4 99 7 7777777777777777777 7777777777 7 99 99 22 6 000 4 0 6 8 0000 66666 0 4 88 0 0 22 88 22 4444444 4 555555555555555555 99 7 111 7 444444444 7 7 7 4 99 666666666666 0 8 88 0 0 88 2 8 66 000 8 8 8 44444444 0 0 0 00 0 88 0 0 2222 888888888888888888 3 3 0 888888 2 2 2 2 22222222222 22 5 8 0 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 7 7777777 0 7 0 333333333333333333333333333333333333333333333333333333333 888 8 6 1111111 2 88888888888 0 2 0 0 5 0 8888888888888888 2 00000000 0 88 5 8 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 222222 555 0 000000000000 0 555 0 0000 00 888 6 88 0 66 6 6 8 00 4 44444444444 0 6 4 2222 88 000 0 0
consensus : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---C--GT---ATA--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TATTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A-A-G-AGAA-AA--AAATAAA---CG--AAGAG-ATCT-C---GTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----C-G------GA-TC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAGACAT-------ACACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGA-TAT-TAATA--ACTCTCTTAAAATTTTCGCACCCCCCC-CCT-----CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-AA-TTA-TA--AGCAATG-AAAAAAAA--TATCG-ACA-TA--CTTGCTAAATATAAGTCGC---GATATATACCGATA--CAAAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCATC--GAAGAGATATG-TAACCAAGT-ATATAACACAAAN-TAAAAAAGTA-AA-CATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
Reference ( family-34 ) : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---C--GT---ATA--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TATTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A-A-G-AGAA-AA--AAATAAA---CG--AAGAG-ATCT-C---GTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----C-G------GA-TC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAGACAT-------ACACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGA-TAT-TAATA--ACTCTCTTAAAATTTTCGCACCCCCCC-CCT-----CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-AA-TTA-TA--AGCAATG-AAAAAAAA--TATCG-ACA-TA--CTTGCTAAATATAAGTCGC---GATATATACCGATA--CAAAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCATC--GAAGAGATATG-TAACCAAGT-ATATAACACAAAN-TAAAAAAGTA-AA-CATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
gi|1 : CCGGAAGT--AAAT-ATAACATTTT---G-T-TTATTTGTAATGC-ATTT-TT-AAAAAAAAT-AAATACCAACCGTAAAAATTA-T-T-TCAATTA-T-CTTAACCGATAAACGAT--CATATTGA-CA--AAA--TAA-------CGTTTT---CCGT-AA-AT-AA---ACCACCTTT-GTG-AT-ACCACCACGAAAACGA--------GCTTCAAAA-ATAAAC-GC-C-GGA-GTG---A--A----ACAG-TCAT--ACCGAC--TCCA-TGTGCAAGGTG-TTTTAAAT-AACATACAGTG-GAGAGT-GCAATGCCTTGAC---GCTT--GCCG-TCTGATAT---TC-GCAT-CGATAAAACCAGTCT-TATTCATCGGTCA---TAT-AT--CGATACC--ACAACGGCG-GAACAGACATTCT----CAA-G---AAGAATAGC------ATCGGTAGATG--ATAAAG-A-A-GTAGCG-AA--ATATAA----CG--AAGAG-ATCTGC---GTGT-TCCGCCG-GT--AGT--GAGTTTAAT-GCCAAT-AC----ACA----C-G------GAATC-CAA-CAAGACT-CCAACAACAAAAGGGAA--CC-GTGCGCATCA----CT------CCAGACATTTCACATACACGA-GAT--AACAATCTA--AAAGGAGAAATTTACAA-ATC--AACCCC----ATTCTTTAT-ATCTATTT-GTTTATC-TGTATTT-TATTTCC-TTTTTTAAT-TTG--AATTTCCCATTTATCTGTTTATGAATAT--AATA--AC---CTTAAAATTTTCGCACCCACCCACCT-----CTCTCTCTCTCCTACATT-GAA-TGAA--TAA-AAATTA-TACAAGCAATA-AAAAAAAAAATATCG-ACAATAATCTTGCTAAATA-AATTCGC---GATATATACCGATATACAAAAAC-GATAACTT-CGTGCCT--GTC-TAA--CCCTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAA-GA-GG--G---GGGTGTGTAAGAT--TA----------CCCCCCCCGGTAAGTTTATGTCCAAGCGGCATCGATTACACAATA-TTTCGTCTAAG-TTTA-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACTCCG-------T-ATAGCTTTTT-GTCAGACTTTGA-----------------------ACTTGTA-------------G-------------CTTTCTA-GCA---------------TTCATGTGCTGT---AAAGTAGACCG-ATTTTTAT-TTTTT-CAACAAGCTCGGAAGTC-----A-----T----AAACTTACAATATCATGTATATTCCGAC-ATA--ATAATCGTTTGATATCTT-----------ATCAATAAATCCACCCTTCTTGTGCCG-G-CACGT-GT----CGTGTAAAAAGGGTTCGA------------C-GAGTCCCGGGTGGAATATACTA---GAATTAAGAC-C-----G---GCAATTTCCCGAGCGAAACCCAGATTT--G-GCCGCTTCATT--GAAG---TCTG-TAACCAAGT-ATA-AACACAAAC-CAAAAA--TA-AA-CAT-TCAAG-TTTTCTTAAGCCTCTT-TAATGGAC---TGATGTGATGAA-GTATGGT-CCAC
gi|10 : ATGC-ATTT-TT-AATAA---T-AAATTCCAACCGTAAAA-TTA-T-T-TCAATTA-TT------------------------TGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-A-C----CGAGAACGA-G------GCTTCAAAA-ATAA-C-AC-C-AGATGTG------AC---ATA--TTAT--A---AC--TGCA-TAGGCA--GTG--TTTAA-C-AACA---A-GGAGATAGT-GC
gi|11 : CTGTTTATGA-TAT-TAATA--ACTCTCTTAAATTTTTCGCACCCCCCC-CCCCCTCACTCTCTCTCTC-TACATT-GAACTGAA--TAATAA-TTT-AA--AGCAATG-AAAAAAA
gi|12 : CGCTTCATT--GAAG---TATG-TAACCAAGT-ATA--ACACAAAC-AAAAAAAGTAGAA-CATGTCAAG-TTTTCTTAAGC-TCAT-TAATGGAC-TTTGAT---ATGAA-GAATGGT-ACA
gi|13 : TGT-TCTA-TG-GC---GT--GTGTGTATT-GCCAAT-AC----ACAGTGTC-GTACGTAGA-TT-CAC-GTAGAC--CCTAT-TCATAGGGAAA---C-GCG-----CA----CC------TTATGTAT-------ACA--A-CAT--AT--AT
gi|14 : AATA--ACTCTCTTAAAAATTTCGCACCCTCCC-A---------CTCTCTCTC-TACATT-GAA-TGAA--TAA-
gi|15 : TTG-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-At
gi|16 : CA-TGGACA--GTT-TTTTAA-C-AACA---A-GGAGAGAGT-GCAaggattgagtgcatttatttat
gi|2 : accacccATAC---AC-GCA--CGATAGAACCGATAT--ATA-AT--GTCAAGATATAACTTCGGTACTGTACCACCCCATGGACAG---TTTTACAACAACG---GAGAAGTGC------AT-G-----TG--AGAGAG-A-A-A-AGAAGAA--AAATAAA---CG--AAGATTATCT-C---GATT-TTCGC---AT--AGT--GGGCTTATT-GC-AAT-AT----ACA----CCG------GA-TCACAC-AGAACT--CCAAC-TCAAAGGAGAA--CCCGTGC-----A----CT------CCAGACAC--------TACGA-GAT--AT--ATCTGGAAAAAAAAAAA---ACTATATCGAAACCCCTCGTATTTTTCTT-TTCAATTTCTTTTATCATGT-TTA-TA---TGATATATTGAT------AATTTCTCCTTT-----TT------------------CTCTCTTAAAATTT---CA----CCC-CCT-----CTCTTTC------ACA-T-GAA-TGAACTTAA-AA-TTT-AA--AGCAATG-AAAAAAAA--TATCGAACA-TA--CTTGCTAAATATA--TCGT---CATAT---CC--------AAAAC-GATG-CCTACGTGCCCTGGTG-TAA--CTTTTT-CCGTTAGAAATAAA-TAAAGTCATTTCTTATCAGATAAATCAATGATGGGTGA--GGGTG-GTAAGATAAAA------------ACACCTCGTAAGTTTATGT--AAGCGGCATCGATTACACAA-ATTTTCA-GCACGTTTTATTGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACtg
gi|2 : atattAAGA-AC----------G-----T-------------------------ATTACT-CG-------TAATGGTATTTT-GTCAGACTTGGAACTTTTAAAAATCGCATATGTAAACTTTTA-------------A-------------TTTTTTTTGCATTATTATT-ACCCACTTCATG-GCTGT---A---TA-CACG-ACTTT-AT-TTTTT-CGATAAGCTCG-AATTCCACGAA-----A----AAACT-ACAATATCAT-T-TA---CGAC-TAA--ATAAA---------TCTT-----------G--AA----T-TGTCCTTCT----CGG-G-CG-GGGAC----CG---A----------GA------------C-GAG-CCCGGGTGGA--AT--TA---GATCTAAGACTC-----GTCTGC-ATT---CGAGCGAAACCCTGATTTTCGCGCCGCATCATC--GAAGAGATATGATAAC--AGT-CTATAAC-CAAGT-TATAAAA--A-A-----GTCGAA-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ggagctgcattttttgatacaagaacgtattactcgtaatggtattttgtcagacttggaacttttaaaaatcgcatatgtaaacttttaattttttttgcattattattacccacttcatggctgtatacacgactttattttttcgataagctcgaattccacgaaaaaactacaatatcatttacgactaaataaatcttgaattgtccttctcgggcggggaccgagacgagcccgggtggaattagatctaagactcgtctgcattcgagcgaaaccctgattttcgcgccgcatcatcgaagagatatgataacagtctataaccaagttataaaaaagtcgaattttcttcagcttcttcttggactttgatatgaagtatggtaacc
gi|3 : atattatacacgcacgatagaaccgatatataatgtcaagatataacttcggtactgtaccaccccatggacagttttacaacaacggagaagtgcatgtgagagagaaaagaagaaaaataaacgaagattatctcgattttcgcatagtgggcttattgcaatatacaccggatcacacagaactccaactcaaaggagaacccgtgcactccagacactacgagatatatctggaaaaaaaaaaaactatatcgaaacccctcgtatttttcttttcaatttcttttatcatgtttatatgatatattgataatttctcctttttctctcttaaaatttcaccccctctctttcacatgaatgaacttaaaatttaaagcaatgaaaaaaaatatcgaacatacttgctaaatatatcgtcatatccaaaacgatgcctacgtgccctggtgtaactttttccgttagaaataaataaagtcatttcttatcagataaatcaatgatgggtgagggtggtaagataaaaacacctcgtaagtttatgtaagcggcatcgattacacaaattttcagcacgttttattgaataaacagtggaaaaggtatacggagctgcattttttgatacCCGGAATTCTAAATTATA-CATTTTT--GGT-TTAATT-TTATGC-AATT-TT-TAAAA---T-AAATACGCACCGTAAAA-TTA-TATATTAATTATTTCTTAACCGATAAACGATACTATTTTGATCA--AAAATTAA-------CGTTTT---CTGTCAA-AT-AA---AC-ACTTTA-ATGAAT-A-C----CGAGAACGA-G------GCTTCCAAA-ATAAGC-AC-CTGGATGTG---CGTGT---ATG--TTAT--A---ACTGTGCAGTCGGCA---TGTTTTTAA-CAAACA---AGGGAG-GAGTGGCAATG--TTGACTTGGCTT--GCCG-TCTGATAT----C-GCATACGATAATAACAGTCTATGGT--TTAGTCG---TATTAC--ACATATC--A-GACGGCA-GGCCAG----TCT---------------AATA------------GTGCATG--A-AGTGAA-A-G-AGAA-GA--AAA--------------------T-T---GTGT-TCCGC---GT--AGT--GGGTTTAAT-GCCAAT-AC----ACA----C-G------GA-TC-CAC-AAAGAC--CCAACATCAAAGGGAAA--CC-GCG-----CA----CT------CCAGAC---------ACACGA-GAT--AT--ATCTG--AAAG--AAAATTTAATA-ATCGAA--------------------CCTATTT-GTTTGTT-TGT-TTTGTTTGTTG-TTTTTTAGT-TTG--AATTTTCTTTTTATCTGTTCATGA-TAT-TAATA--ACTCTCTTAAAATGTTCGCACCCCC-----------CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-----TA-TA--AGacc
gi|3 : cttAATATAAGTCGC---GATATATATCCGTAGTCAAAAAC-GATA-CTT-CGTACCT--GTC-TAA--CCTTTTTCCG-TAGGA--AA----------------------TAAA-CAATGA-GG--GACAGGGTGTGTAAGATAACA----------CCCCACCCCGTAGGTCT---------------CGATTACAAAATATTTTCGTGTAAGTTTTA-TGAATAATTCAGAATAAA------------------AGTG----------GAAAAGGT----------A-----TACGGAATGCATTTTTATTTATAAGGAT-ACT-CG-------TAATGGTTTTTT-GTCAGACTTTGA-----------------------tcgcgatatatatccgtagtcaaaaacgatacttcgtacctgtctaacctttttccgtaggaaataaacaatgagggacagggtgtgtaagataacaccccaccccgtaggtctcgattacaaaatattttcgtgtaagttttatgaataattcagaataaaagtggaaaaggtatacggaatgcatttttatttataaggatactcgtaatggttttttgtcagactttga
gi|4 : cttccggaattctaaattatacatttttggtttaattttatgcaatttttaaaataaatacgcaccgtaaaattatatattaattatttcttaaccgataaacgatactattttgatcaaaaattaacgttttctgtcaaataaacactttaatgaataccgagaacgaggcttccaaaataagcacctggatgtgcgtgtatgttataactgtgcagtcggcatgtttttaacaaacaagggaggagtggcaatgttgacttggcttgccgtctgatatcgcatacgataataacagtctatggtttagtcgtattacacatatcagacggcaggccagtctaatagtgcatgaagtgaaagagaagaaaattgtgttccgcgtagtgggtttaatgccaatacacacggatccacaaagacccaacatcaaagggaaaccgcgcactccagacacacgagatatatctgaaagaaaatttaataatcgaacctatttgtttgtttgttttgtttgttgttttttagtttgaattttctttttatctgttcatgatattaataactctcttaaaatgttcgcacccccctctctctctctacattgaatgaat-GG--GA--GGGTGTGTA-GATAATATCCCCCCCCCCCCCCCCCCG-GAGTTTATGT-CAAGCG-CATCGATTACACAATATTTTCGTGTAAGTTTTA-TAAATAA----------C------------------AGTG----------GAAAG-GTTACAGAGATGGCATTTT-------------------------AT-ATT-TGATAAGATTAATGGTTTTTTTGTAAGACTTTGA-----------------------ACTTGTA-------------G-------------TTTTA---GCATT-TCATT----------ACGTGCTGTTTAAAC-TA-ACCGGATTCTTATATTTGT-CGATAAGCTCGGAAGTC-----A-----TGAAAAAACTTACATTATCAT-T-TA---CGAC-ATATAATAATCGTCT----TGTTCATTATAAAAAA--AA-AAAT-GACCCTTCT----CTGTG-CG-GC-ACGTGTCG---G----------GAAAAGGGTAGCGACAGAG-CCCGGGTGGAATAT--TACTAGAATTAAGAC-C-----G----C-ATT---CGAGCGAAACCCAGATTT--G-GC-GCTTCATTTTGAAG---TCTT-TAACCAAGTTATACAACACAAAAGTAAAAAAGTA-AAACATGTCAAGTTTTTCTTAAG-CTCTT-TAATGGACTTTTGAT---ATGAAGGTATGGTAACAC
gi|5 : gcagGGAAGT--AGAT-ACA-CATTTTT--G-TATCATTT---ATGC-ATTT-TT-AAAAA---TTAAATAC-AACGATAAAA-TTAGT-T-TCAATTA-TTCTTAACCGATAA-CGATA-TATATTGA-CATAAAAA-TAA-------CGTTTT---CCGT-AA-ATGAA---AT-ACCTTT---G-ATTACC----TAGTAACGATG------GCTTCAAAA-TCAA-CAGC-CAGGATGTGA--C--AT----TA--TTAC--C---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGAAGAGAGT-GGCATG--TTGACTG-GGTTAAGCCGTTTTGATACTCTGCTACTTACGATAAA--CAG--T-TGTT-AGC-GTAA---TACTAC--AAATATT--A------TA-GCACAGGCAGTCT-----AA-G---AGTGAC--C------AT-GG-AG-TG--A-A-AG-C-A-G-AGAA-AATTATATAAA---CG--ACGAG-ATCT-C---GTGT-TCCCATG-GTTAAGTTCGGTTTTAATAGCCAAT-AC----ACA----C-G------GA-TC-CAC-AAAGAC--CC-GCATTCAAAGGCAC--CC-GCGC----CA----CT------CCAGACA----------ACGACGATTAAT--ATCTG--AAAG-AAAAATTTACAA-ATCGAAACCCC----ATTCTTAATATTCTATTT-GTTTGTT-TTT-TCT-TGTTTTG-TTTTT--A--TTG--AATTTTCTTTTTA-CT-TTTATTA-TATATAATAAGACATTCATAAAATTTCC---CCCCCCC-CCT-----CTCTCTCTCTC-TACATTGGAA-TG-A--TAACAA-TGATTA--AACAATG-AAAAA-------------A-TA--C-TGCTAAATATAAGTCGCGGAGATATAT-CTGATA--TCAAAACAGATA-CTT-C-TGCCT--GTCATAACCCCTTTT-CCG-TAG----AAGTTAAA------------CAGAacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttccacatggcatagtcagatagtacttcaagtacaattcaattcttattggaccaaattaagtgcccccaaagggcaatatgaaggtgtacaatggtataacatcccgttgttgcacgtgctagaggacaattgtgaataacacaggtgt
gi|6 : tccaGAGCC--AAAT-AT--CATTTTTTGG-T-TTATTT-TA-TGCCATTTGTTGAAAAA---T-AAATACCAATT----AA-TTG-T-C-TTAATTA-TTCT-------TAAACGATA-TAT-TTGA-CA--AAAA-TAAATAGTGTAGTTGTGCACC-T-AATAT-TATCCAC-ACTTTTCATG-AT-AAC----TGAGAACGGTGGAGGCTGTTGCAAAATATAA-G-ACAC-GGATGTGGAAC--GTTCCATATTTTATTCA---AC--TGTA-CG
gi|6 : gaaCATGCT----CAA-AGAAAAGAAAAGTGCACATAT-GG-AGGTGTGA-AGAG-AGA-T-AGAA-AA--AAATAAAAACCGTAAGGAG-AT-G-CGGGGTGTATCC-CTGCGT--AGT--GGCTTT-TT-GCCAATCACATCTACA----C-G------GA-TC-CTCAAAAGACAACCAAACTTAAA-GGGAACTCT-GCGC----CAACAGTTTTCGTACTAACCAT-------TCATGA-GAT--AT--ATCTG--AAAGttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaacatgctcaaagaaaagaaaagtgcacatatggaggtgtgaagagagatagaaaaaaataaaaaccgtaaggagatgcggggtgtatccctgcgtagtggctttttgccaatcacatctacacggatcctcaaaagacaaccaaacttaaagggaactctgcgccaacagttttcgtactaaccattcatgagatatatctgaaag
gi|7 : gaagagccaaatatcattttttggtttattttatgccatttgttgaaaaataaataccaattaattgtcttaattattcttaaacgatatatttgacaaaaataaatagtgtagttgtgcacctaatattatccacacttttcatgataactgagaacggtggaggctgttgcaaaatataagacacggatgtggaacgttccatattttattcaactgtacgttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaaATG--G-AGAG-A-AAG-AGAA-GA--AAATAAA---CG--AAGAT-ATCT-C---GTGT-TTCGC---AT--AGT--GGCTTTATT-GCCAAT-AT----ACA----C-G------GA-TC-CAC-AAAGAC--CCAACATCAAAGGGAAC--CC-GTG-----CA----CT------CCAGAC---------ACACGA-GAT--AT--ATCTG--GAAAAAAAA---TACTA-ATCG-AACCCC----ACTCTTTGT-TTTTTTTTCAATTTTC---T-TTT-TA-TCTG--TTTATGATATTGATAATTTCTCCTTTCTTT---------------------CTCTCTTAAAATTTT--CACCCC--------------CTCTCTTTC-TACATT------------------TTA--A--AGCAATGAAAAAAAAA--TATCG-ACA-AA--CTTGCTAAATATA--TC-C---G-TATATTCC--------AAAAC-GATG-CCT-CGTGCCC--
gi|7 : gagtgcCCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTAAAAATCCATATGTA-------------TTTTTTT-GCATTATTATTTACCCAacccgtaagtttatgtcaagcggcatcgattacacaaaattttcatgtacgttttatgaataaacagtggaaaaggtatacggagtgcatttttattgataagtacgtatactcgtaatggtattttgtcagacttggaacttttaaaaatccatatgtatttttttgcattattatttaccca
gi|8 : gagtgcatggagagaaagagaagaaaataaacgaagatatctcgtgtttcgcatagtggctttattgccaatatacacggatccacaaagacccaacatcaaagggaacccgtgcactccagacacacgagatatatctggaaaaaaaatactaatcgaaccccactctttgtttttttttcaattttctttttatctgtttatgatattgataatttctcctttctttctctcttaaaattttcaccccctctctttctacattttaaagcaatgaaaaaaaaatatcgacaaacttgctaaatatatccgtatattccaaaacgatgcctcgtgCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTA-------------AAAATCCATATGTATTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA------CCG-ACTTTTAT-TTTTTTCGATAAGCTCGGAATTC-----ACGAAAT----AAACTTACAATATCATGT-AC---CGACTATA--ATAATCGTTT-------------------------GAAT-GATCCTTCT----CTG-GGCG-GT-AC----CG---A----------GA------------C-GAGGCCCGGGTGGAAT----TA---GATCTAAGAC-TCGTCTG---GC-ATT---CGAGCGAAACCCTGATTT--TCGCCGCTTCATC--GAAGAGATATG--AATAAAGT-CTGTAAC-C-AAG-TATAAAA--A-AA----GTCAAG-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
blockSeqs : T CT T A TTGGT TTA C G G . T C G . G ATA T TAACCGA A ACTATT T TA AT ATAGTGT GCA C T G TCC . CA A T CC TGGAGGCT T GCACCT GAACGTTCCATATT TCA TG G . TT CA AG G . TTG AA T TCTG T TA AC TA ATGGTTTA AGA A TTCG GTACC CC T TTTTACAACAACGGAGAAGTGCATG TGA G AA AG G TT AAAC TA A TT C . GGG A CATG TA TC T A C ATCT GTGT C TACGTA . A A AA T A G CT C CCAACAGTTTTCGTA ATA C TA . GA A ATT T T A TCGT AATAT C A AT . G TG AT TG TATTGAT C ATCTGTTCATGATATT AG T TCG CCCCCTCA . G C A CT CAATGATTA A . A . . T AG GGA A CGTAGTCA A . A TG A CC T T AAAT ATAAAGTCATTTCTTAT T T T GTGA T A A A TCCCCCCCCCC C G T C T TTCAGAATAAAAGTGGAAAAGGTATACGGAATGCATTTTTATTTATAAGG T . ATAAGAT A T G ACTTTTAAAAATCGCATATGTAAACTTTTAA TTT A TACCCAC T TTAAACTAA G T A T G T CACGAAA T GTAC T TA C TGTTCATTATAAAAAAAAAAATGACCCTTCTCTGTGCGGCACGTGTCGGGAAAAGGGTAGCGA A G ATAT CTA T TCGTCTGG . . T TCGC TT AGA AT C TA T A AG A AGTAGAACAT T T TAA TT . G A
blockSeqs : G . . A TGGT TA . . . . . G G . . T . TAACCGA A ATATA . . A . . . . . . . A . . AC TG . CAGCCA CGTGTATG A . . . T C AG . . TG . . A . TA AA TC TGTTAGC . T AC AG GG . GCAGTCTAAGAGTGACCATGGAG AG G AG A . . A . C G C . . . CTGC . . T . . . . . . . . . . A A G . . CCACT ATT . . . . A ATT T . A . CTTT C G T . . TT T TA TTTG T ACTTTTATTATATAT . T TCG CCT . . . A . TAATTTAA . . . . . T AG . T GATATC . . . . . . . . GA GTTAAA . T . GACA T A A C C C G T A . ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAAGTACGT . . . T . T ACTTTTAAAAATCCATATGTA TT A ACCCAC T ATAC . T . . G G ACGAAAT T TTA . . C TCTTGAATTGTCCTTCTCGGGCGGGGACCGAGA . . AT . A TCGTCTG . . A TC . AGA T C A C A C T AGTAAAACAT . C TAA T . . .
blockSeqs : C . . . TGTA A . . . . . C A . . T . . . ATAT . . A . . . . . . . A . . C G . GACAC ACATTA A . . . T C A . . . . . . ATAAT . T AA A . . TCTAATAGTGCA A G A G . . A . G G C . . . ATG . . A . . . . . . . . . . A C G . . CACC AC . . . . . A A . A . TGTT . G T . . T T TG TTG T CTTT . T TCG CCT . . . A . AATTTAA . . . . . . . . . . . . . . . . . . . . . GA . . A T . C G A A . ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAAGTACGT . . . T . T ACTTTTAAAAATCCATATGTA TT A . . AA . . . . . T ATGAAA . TTA . . . GAATGATCCTTCTCTGGGCGGTACCGAGA . . AT . T CG . . T G . . T A C T . T A AAAA . T CT T . . .
blockSeqs : . . . . . . . . . C . . . . . . A . . . . . . . . . . C G . CACC ACATA C . . . . C A . A G C G . . A . A T . . . . GC . . A . . . . . . . . . . A A A . . CACT A . . . . . . T . . . . . T . . . . . . T C TT . T CC A . . . A . TATA . . . . . . . . . . . A C . CAGTGGAAAGGTTACAGAGATGGCATTTT . . . A . G ACTTGTAG . . . . . . C . . G T AAA . . CT T . . .
blockSeqs : . G . A T . . . . . . . . . . GC . . T . . . . . . . . . . A . G . . CACT A . . . . . A T . . . . . . TTAA . . . C . ACAGTGGAAAAGGT . . . A . G
blockSeqs : . GC . . T . . . . . . . . . . . . . . . CACT A . . . . T . . . . . . . . ACAGTGGAAAAGGT .
blockSeqs : .
blockSeqCons : *** A* C***** G******* CACC**** GCATA*********** A***** ** C** A**** A*** G** A*** CGC** ** CACT*************** A********* ** TTG**** CTTT************** CC******* TAATTTAA**** GTAC**** C* AGAA******* T* ***
originalCons : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC----CGAGAACGATG------GCTTCAAAA-ATAA-C-GC-C-GGATGTG---C--GT---ATA--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TATTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A-A-G-AGAA-AA--AAATAAA---CG--AAGAG-ATCT-C---GTGT-TCCGCTG-GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----C-G------GA-TC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGC----CA----CT------CCAGACAT-------ACACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGAT-TTG--AATTTCCCCTTTATCTGTTTATGA-TAT-TAATA--ACTCTCTTAAAATTTTCGCACCCCCCC-CCT-----CTCTCTCTCTC-TACATT-GAA-TGAA--TAA-AA-TTA-TA--AGCAATG-AAAAAAAA--TATCG-ACA-TA--CTTGCTAAATATAAGTCGC---GATATATACCGATA--CAAAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCATC--GAAGAGATATG-TAACCAAGT-ATATAACACAAAN-TAAAAAAGTA-AA-CATGTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
finalCons : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-AC-----CGAGAACGAG-------GCTTCAAAA-ATAACACC----GGATGTGGCATA-----------TTATA-----AC--TGCA-TGGGCA--GTG-TTTTAAC--AACAA----GGAGAGAGT-GCAATG--TTGACT--GCTT--GCCG-TCTGATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TATTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATGA---AGAG-A-AG--AGAA-AA--AAATAAA---CG--AAGAG-ATCT-C---GTGT-TCCCGC--GT--AGT--GGGTTTANT-GCCAAT-AC----ACA----C-G------GA-TC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCGCACT---------------CCAGACA---------CACGA-GAT--AT--ATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTG-TTTTTTGATTG----AATTTCCCCTTTCTTT--------------AATA--ACTCTCTTAAAATTTTCGCACCCCCCCCC-------CTCTCTCTCTC-TACATT-GAA-TGAA--TAATAATTTAA----AGCAATG-AAAAAAAA--TATCG-ACA-TA--CTTGCTAAATATAAGTCGC---GATATATACCGTAC----AAAAC-GATA-CTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGTC-AAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCATC--GAAGAGATATG-TAACCAAGT-ATATAACACAAAN-TAAAAAAGAA-------GTCAAG-TTTTCTTAAGCCTCTTCTAATGGACT-TTGAT---ATGAA-GTATGGT-ACAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCGCTGAATAGTCAATAAGTACTATACAAGATACAATTCAATTCGTTATATGATCAAATTTTTTCCCAATAAAAATAGGGCAATAAGAAGGTGTAACCAACTAGTTAAGCATCCCGTGTTGGCACGTCGGCCTTGATAAATAACCAGGTGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 11 1111111 1111 111 111 111111 11 2222222 111 111 11 1 22222 1111 11 11111111 444444444444444444 222222 11 11 111 11 2222222222 1 3333 1 11 3333333333333 111 1111 22222 1 6666666666666666666666666666666666666666666 1111 111 111 2222 1 11111 1111 1111 111111 11 11111111 1111 444444444444444444 111 1111 11111 2 222222222222 9999999999999999999999999999999 2222222222 111 11 11 1111 1111 11 11 111 666666666666 11 1 11 1 1 1111 555555555555555555 1 1 222222 44444444444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 999999999999999999999999999999999999999999999999999999999 1111111 44444444444 1 1 1 5555555555555555 22222222 1 11 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 2 111111 111 333333333333 1 111 2222 11 333 1 1 555555555555 2222 111
lowQualScore : 1 33 0 33 8888888 7777 8 8 8 444 8 5 3 8 8 000 8 0 7777777 5 444444 8 11 88 6666666 444 8 8 8 444 8 11 8 6 00000 8 7777 8 8 11 8 77777777 0 333333333333333333 000000 11 6 11 88 999 444 8 8 88 7777777777 3 0000 0 22 55 1111111111111 777 7 6666 44444 55 0 0 9999999999999999999999999999999999999999999 6666 1 888 000 6 99 3 111 99 1 99 0000 2 1 33333 5 77 0 1 5 5 2222 2222 5 666666 5 5 5 33 8 1 0 77 5 77777777 2222 111111111111111111 5 77 77 99 3 666 1 8 5 0 7777 77777 0 1 88 8 8 66 8 888888888888 1 6666666666666666666666666666666 1 77 1 555 0 5555555555 000 00 5 1 77 7 11 8 8 2222 0 3333 33 3 0 55 444 0 0 444444444444 8 8 8 8 8 11 0 33 0 0 7777 555555555555555555 3 7 0 000000 3 3 3 1 66666666666 99 2 7 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 6 1111111 1 6 1 222222222222222222222222222222222222222222222222222222222 999 0 5 9999999 3 88888888888 0 3 0 0 2 1 9999999999999999 3 88888888 0 33 2 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0 444444 777 1 999999999999 0 777 1 5555 2 11 000 0 88 5 8 0 3 0 88 1 1 8 222222222222 8 0 6 2222 88 444 8 8
lowQualScore : . .. . .. ....... .... . . . ... . . . . . ... . . ....... . ...... . .. .. ....... ... . . . ... . .. . . ..... . .... . . .. . ........ . .................. ...... .. . .. .. ... ... . . .. .......... . .... . .. .. ............. ... . .... ..... .. . . ........................................... .... . ... ... . .. . ... .. . .. .... . . ..... . .. . . . . .... .... . ...... . . . .. . . . .. . ........ .... .................. . .. .. .. . ... . . . . .... ..... . . .. . . .. . ............ . ............................... . .. . ... . .......... ... .. . . .. . .. . . .... . .... .. . . .. ... . . ............ . . . . . .. . .. . . .... .................. . . . ...... . . . . ........... .. . . . . ............................................................................................. . . ....... . . . ......................................................... ... . . ....... . ........... . . . . . . ................ . ........ . .. . . ........................................................................................... . . ...... ... . ............ . ... . .... . .. ... . .. . . . . . .. . . . ............ . . . .... .. ... . .
lowQualScore : 0 88 0 22 0000000 6666 0 0 0 000 0 0 2 0 0 000 0 8 4444444 6 888888 0 00 88 0000000 000 0 0 0 000 0 88 0 0 00000 0 0000 0 0 00 0 00000000 8 888888888888888888 888888 00 7 00 88 222 000 0 0 33 7777777777 3 2222 0 55 88 0000000000000 555 0 5555 00000 00 0 2 3333333333333333333333333333333333333333333 0000 0 333 222 7 22 2 777 22 5 22 8888 0 0 77777 7 99 7 0 7 7 1111 1111 7 444444 7 7 7 66 4 7 4 99 7 99999999 1111 111111111111111111 7 99 99 22 8 888 4 0 6 8 0000 66666 0 4 88 0 0 44 0 888888888888 4 6666666666666666666666666666666 4 99 7 111 7 7777777777 000 77 7 4 99 3 00 0 0 2222 8 2222 88 2 8 66 000 8 8 000000000000 0 0 0 0 0 00 0 88 0 0 2222 888888888888888888 3 3 0 888888 2 2 2 2 22222222222 22 5 8 0 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 7 7777777 0 7 0 333333333333333333333333333333333333333333333333333333333 888 8 6 1111111 2 88888888888 0 2 0 0 5 0 8888888888888888 2 00000000 0 88 5 8 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 222222 555 0 000000000000 0 555 0 0000 5 00 888 6 88 0 0 6 6 6 88 0 4 0 444444444444 0 6 4 2222 88 000 0 0
consensus : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC-----GAG-AAC----GA-GGCT-T--CAAAA-ATAA-CA-C-C-GGATGTG---A-------CAT-A--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGA-GAGAGT-GCAATG--TTGACT--GC-TT--GCCGTCT-GATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TATTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A-A-G-AGAA-AA--AAATAAA---CG--AAGAG-ATCT----CGTGTTCCCGC--G--TA-GT--GGGTTTANT-GCCAAT-AC----ACA----C-G------G-ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCG-----C--AC----TCCAGAC---------A------C-ACGA-GAT--A--TATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTGTTT-T----TT-GA-TTGAATTTCCCCTT--TA----CT----------T----------TAATA--ACTCTCTTAAAATTTTCGCACCCCCCCCC------CTCTCTCTCT---CTACATT-GAA-TGAA--TAATAAT--T-TA-AAGCAAT--G-AAAAAAAATATCG-AC-ATA--CTTGCTAAATATAAGTCGC---GATATATA-CCGA--TA--C-AAAA-C-GAT-ACTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCA--TCGAAGAGATATG-TAACCAAG-TATATAACAC-AAANTAAAAA-AGT--A-A-A---GTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
Reference ( family-34 ) : CCGGAANT--AAAT-ATA-CATTTTT--G-T-TTATTT-TAATGC-ATTT-TT-AAAAA---T-AAATACCAACCGTAAAA-TTA-T-T-TCAATTA-TTCTTAACCGATAAACGATA-TATATTGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC-----GAG-AAC----GA-GGCT-T--CAAAA-ATAA-CA-C-C-GGATGTG---G-------CAT-A--TTAT--A---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGA-GAGAGT-GCAATG--TTGACT--GC-TT--GCCGTCT-GATAC---GC-GCATACGATAAAACCAGTCT-TGTT-ATCGGTCA---TATTAC--CGATACC--ACGACGGCA-GGACAGGCATTCT----CAA-G---AAGAANAGC------AT-GGTAGATG--A-AGAG-A-A-G-AGAA-AA--AAATAAA---CG--AAGAG-ATCT----CGTGTTCCCGC--G--TA-GT--GGGTTTANT-GCCAAT-AC----ACA----C-G------G-ATC-CAC-AAAGAC--CCAACATCAAAGGGGAA--CC-GCG-----C--AC----TCCAGAC---------A------C-ACGA-GAT--A--TATCTG--AAAGAAAAAATTTACTA-ATCGAAACCCC----ATTCTTCGT-TTCTATTTCGTTTGTC-TGT-TTT-TATTTTGTTT-T----TT-GA-TTGAATTTCCCCTT--T-----CT----------T----------TAATA--ACTCTCTTAAAATTTTCGCACCCCCCCCC------CTCTCTCTCT---CTACATT-GAA-TGAA--TAATAAT--T-TA-AAGCAAT--G-AAAAAAAATATCG-AC-ATA--CTTGCTAAATATAAGTCGC---GATATATA-CCG---TA--C-AAAA-C-GAT-ACTT-CGTGCCC--GTC-TAA--CCTTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAATGA-GG--GA--GGGTGTGTAAGATAATA----------CCCCCCCCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAATATTTTCGTGTANGTTTTA-TGAATAA---------AC------------------AGTG----------GAAAA-GT----------G-----T-------------------------AT-ACT-CG-------TAATGGTNTTTT-GTCAGACTTNGA-----------------------ACTTTTA-------------A-------------TTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA--TA-ACCG-ACTTTTAT-TTTTT-CGATAAGCTCGGAANTC-----A-----T----AAACTTACAATATCATGT-TA---CGAC-ATA--ATAATCGTTT----TCTT-----------A--AA-AAAT-NACCCTTCT----CCG-G-CG-GT-AC----CG---A----------GA------------C-GAG-CCCGGGTGGAATAT--TA---GANCTAAGAC-C-----G---GC-ATT---CGAGCGAAACCCNGATTT--GCGCCGCTTCA--TCGAAGAGATATG-TAACCAAG-TATATAACAC-AAANTAAAAA-AG---A-A-----GTCAAG-TTTTCTTAAGCCTCTTCTAATGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
gi|1 : CCGGAAGT--AAAT-ATAACATTTT---G-T-TTATTTGTAATGC-ATTT-TT-AAAAAAAAT-AAATACCAACCGTAAAAATTA-T-T-TCAATTA-T-CTTAACCGATAAACGAT--CATATTGA-CA--AAA--TAA-------CGTTTT---CCGT-AA-AT-AA---ACCACCTTT-GTG-AT-ACCACCACGAA-AAC----GA-G-CT-T--CAAAA-ATAAACG-C-C-GGA-GTG---A-------AAC-AG-TCAT--ACCGAC--TCCA-TGTGCAAGGTG-TTTTAAAT-AACATACAGTG-GAGAGT-GCAATGCCTTGAC---GC-TT--GCCGTCT-GATAT---TC-GCAT-CGATAAAACCAGTCT-TATTCATCGGTCA---TA-TAT--CGATACC--ACAACGGCG-GAACAGACATTCT----CAA-G---AAGAATAGC------ATCGGTAGATG--ATAAAG-A-A-GTAGCG-AA--ATAT-AA---CG--AAGAG-ATCTG---CGTGTT-CCGCCGG--TA-GT--GAGTTTAAT-GCCAAT-AC----ACA----C-G------GAATC-CAA-CAAGACT-CCAACAACAAAAGGGAA--CC-GTGCGCATC--AC----TCCAGACATTTCACATA------C-ACGA-GAT--AACAATCTA--AAAGGAGAAATTTACAA-ATC--AACCCC----ATTCTTTAT-ATCTATTT-GTTTATC-TGTATTT-TATTTCCTTT-T----TT-AATTTGAATTTCCCATT--TATCTGTT----------TATGAATA---TAATA--AC---CTTAAAATTTTCGCACCCACCCAC------CTCTCTCTCTCTCCTACATT-GAA-TGAA--TAAAAAT--TATACAAGCAATAAA-AAAAAAAATATCG-ACAATAATCTTGCTAAATA-AATTCGC---GATATATA-CCGATATA--CAAAAA-C-GATAACTT-CGTGCCT--GTC-TAA--CCCTTT-CCG-TAGGA--AAG-TAAA------------CAGATAAA-CAA-GA-GG--G---GGGTGTGTAAGAT--TA----------CCCCCCCCGGTAAGTTTATGTCCAAGCGGCATCGATTACACAATA-TTTCGTCTAAG-TTTA-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACTCCG-------T-ATAGCTTTTT-GTCAGACTTTGA-----------------------ACTTGTA-------------G-------------CTTTCTA-GCA---------------TTCATGTGCTGT---AAAGTAGACCG-ATTTTTAT-TTTTT-CAACAAGCTCGGAAGTC-----A-----T----AAACTTACAATATCATGTATATTCCGAC-ATA--ATAATCGTTTGATATCTT-----------ATCAATAAATCCACCCTTCTTGTGCCG-G-CACGT-GT----CGTGTAAAAAGGGTTCGA------------C-GAGTCCCGGGTGGAATATACTA---GAATTAAGAC-C-----G---GCAATTTCCCGAGCGAAACCCAGATTT--G-GCCGCTTCA--TTGAAG---TCTG-TAACCAAG-TATA-AACAC-AAACCAAAAATAA---ACA-----TTCAAG-TTTTCTTAAGCCTCTT-TAATGGAC---TGATGTGATGAA-GTATGGT-CCAC
gi|10 : ATGC-ATTT-TT-AATAA---T-AAATTCCAACCGTAAAA-TTA-T-T-TCAATTA-TT------------------------TGA-CA--AAAA-TAA-------CGTTTT---CCGT-AA-AT-AA---AC-ACCTTT-ATG-AT-ACC-----GAG-AAC----GA-GGCT-T--CAAAA-ATAA-CA-C-C-AGATGTG---A-------CAT-A--TTAT--A---AC--TGCA-TAGGCA--GTG--TTTAA-C-AACA---AGGA-GATAGT-GC
gi|11 : ----------T----------TAATA--ACTCTCTTAAATTTTTCGCACCCCCCCCCCCCTCACTCTCTCTCT---CTACATT-GAACTGAA--TAATAAT--T-TA-AAGCAAT--G-AAAAAAA
gi|12 : ctgtttatgataCGCTTCA--TTGAAG---TATG-TAACCAAG-TATA--ACAC-AAACAAAAAA-AGTAGA-ACAT--GTCAAG-TTTTCTTAAGC-TCAT-TAATGGAC-TTTGAT---ATGAA-GAATGGT-ACA
gi|13 : -GT--GTGTGTATT-GCCAAT-AC----ACAGTGTC-GTACGTAG-ATT-CAC-GTAGAC--CCTAT-TCATAGGGAAA---C-GCG-----C--AC----CTTATGT---------A------T-ACAA-CAT--A--TAT
gi|14 : tgttctatggcAATA--ACTCTCTTAAAAATTTCGCACCCTCCCAC---------TCTCTCT---CTACATT-GAA-TGAA--TAAT
gi|15 : TTG-TGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-A
gi|16 : CA-TGGACA--GTT-TTTTAA-C-AACA---AGGA-GAGAGT-GCAaggattgagtgcatttatttat
gi|2 : accacccATAC---AC-GCA--CGATAGAACCGATAT--ATA-AT--GTCAAGATATAACTTCGGTACTGTACCACCCCATGGACAG---TTTTACAACAACG---GAGAAGTGC------AT-G-----TG--AGAGAG-A-A-A-AGAAGAA--AAATAAA---CG--AAGATTATCT----CG-ATTTTCGC--A--TA-GT--GGGCTTATT-GC-AAT-AT----ACA----CCG------G-ATCACAC-AGAACT--CCAAC-TCAAAGGAGAA--CCCGTG-----C--AC----TCCAGAC---------A------CTACGA-GAT--A--TATCTGGAAAAAAAAAAA---ACTATATCGAAACCCCTCGTATTTTTCTT-TTCAATTTCTTTTATCATGT-TTA-TAT---GATA-TA---TT-GA-T--AATTTCTCCTT--T-----TT-----------------------------CTCTCTTAAAATTT---CACCCCC-------------TCTCTTT---C-ACAT--GAA-TGAACTTAA-AAT--T-TA-AAGCAAT--G-AAAAAAAATATCGAAC-ATA--CTTGCTAAATATA--TCGT---CATAT----C---------C-AAAA-C-GAT-GCCTACGTGCCCTGGTG-TAA--CTTTTT-CCGTTAGAAATAAA-TAAAGTCATTTCTTATCAGATAAATCAATGATGGGTGA--GGGTG-GTAAGATAAAA------------ACACCTCGTAAGTTTATGT--AAGCGGCATCGATTACACAA-ATTTTCA-GCACGTTTTATTGAATAA---------AC------------------AGTG----------GAAAA-G-----------G-----T-------------------------AT-ACtg
gi|2 : atattAAGA-AC----------G-----T-------------------------ATTACT-CG-------TAATGGTATTTT-GTCAGACTTGGAACTTTTAAAAATCGCATATGTAAACTTTTA-------------A-------------TTTTTTTTGCATTATTATT-ACCCACTTCATG-GCTGT---A---TA-CACG-ACTTT-AT-TTTTT-CGATAAGCTCG-AATTCCACGAA-----A----AAACT-ACAATATCAT-T-TA---CGAC-TAA--ATAAA---------TCTT-----------G--AA----T-TGTCCTTCT----CGG-G-CG-GGGAC----CG---A----------GA------------C-GAG-CCCGGGTGGA--AT--TA---GATCTAAGACTC-----GTCTGC-ATT---CGAGCGAAACCCTGATTTTCGCGCCGCATCA--TCGAAGAGATATGATAAC--AG-TCTATAAC-C-AAGTTATAAA-A----A-A-----GTCGAA-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ggagctgcattttttgatacaagaacgtattactcgtaatggtattttgtcagacttggaacttttaaaaatcgcatatgtaaacttttaattttttttgcattattattacccacttcatggctgtatacacgactttattttttcgataagctcgaattccacgaaaaaactacaatatcatttacgactaaataaatcttgaattgtccttctcgggcggggaccgagacgagcccgggtggaattagatctaagactcgtctgcattcgagcgaaaccctgattttcgcgccgcatcatcgaagagatatgataacagtctataaccaagttataaaaaagtcgaattttcttcagcttcttcttggactttgatatgaagtatggtaacc
gi|3 : atattatacacgcacgatagaaccgatatataatgtcaagatataacttcggtactgtaccaccccatggacagttttacaacaacggagaagtgcatgtgagagagaaaagaagaaaaataaacgaagattatctcgattttcgcatagtgggcttattgcaatatacaccggatcacacagaactccaactcaaaggagaacccgtgcactccagacactacgagatatatctggaaaaaaaaaaaactatatcgaaacccctcgtatttttcttttcaatttcttttatcatgtttatatgatatattgataatttctcctttttctctcttaaaatttcaccccctctctttcacatgaatgaacttaaaatttaaagcaatgaaaaaaaatatcgaacatacttgctaaatatatcgtcatatccaaaacgatgcctacgtgccctggtgtaactttttccgttagaaataaataaagtcatttcttatcagataaatcaatgatgggtgagggtggtaagataaaaacacctcgtaagtttatgtaagcggcatcgattacacaaattttcagcacgttttattgaataaacagtggaaaaggtatacggagctgcattttttgatacCCGGAATTCTAAATTATA-CATTTTT--GGT-TTAATT-TTATGC-AATT-TT-TAAAA---T-AAATACGCACCGTAAAA-TTA-TATATTAATTATTTCTTAACCGATAAACGATACTATTTTGATCA--AAAATTAA-------CGTTTT---CTGTCAA-AT-AA---AC-ACTTTA-ATGAAT-ACC-----GAG-AAC----GA-GGCT-T--CCAAA-ATAAGCA-C-CTGGATGTGCGTG-------TAT-G--TTAT--A---ACTGTGCAGTCGGCA---TGTTTTTAA-CAAACA---AGGG-AGGAGTGGCAATG--TTGACTTGGC-TT--GCCGTCT-GATAT----C-GCATACGATAATAACAGTCTATGGT--TTAGTCG---TATTAC--ACATATC--A-GACGGCA-GGCCAG----TCT---------------AATA------------GTGCATG--A-AGTGAA-A-G-AGAA-GA--AAA--------------------T----TGTGTT-CCGC--G--TA-GT--GGGTTTAAT-GCCAAT-AC----ACA----C-G------G-ATC-CAC-AAAGAC--CCAACATCAAAGGGAAA--CC-GCG-----C--AC----TCCAGAC---------A------C-ACGA-GAT--A--TATCTG--AAAG--AAAATTTAATA-ATCGAA--------------------CCTATTT-GTTTGTT-TGT-TTTGTTTGTTGTTT-T----TTAGT-TTGAATTTTCTTTTTAT-----CTGTTCATGATAT----------TAATA--ACTCTCTTAAAATGTTCGCA----CCCCC------CTCTCTCTCT---CTACATT-GAA-TGAA--TAATAacc
gi|3 : cttAATATAAGTCGC---GATATATATCCG---TAGTC-AAAAAC-GAT-ACTT-CGTACCT--GTC-TAA--CCTTTTTCCG-TAGGA--AA----------------------TAAA-CAATGA-GG--GACAGGGTGTGTAAGATAACA----------CCCCACCCCGTAGGTCT---------------CGATTACAAAATATTTTCGTGTAAGTTTTA-TGAATAATTCAGAATAAA------------------AGTG----------GAAAAGGT----------A-----TACGGAATGCATTTTTATTTATAAGGAT-ACT-CG-------TAATGGTTTTTT-GTCAGACTTTGA-----------------------taagtcgcgatatatatccgtagtcaaaaacgatacttcgtacctgtctaacctttttccgtaggaaataaacaatgagggacagggtgtgtaagataacaccccaccccgtaggtctcgattacaaaatattttcgtgtaagttttatgaataattcagaataaaagtggaaaaggtatacggaatgcatttttatttataaggatactcgtaatggttttttgtcagactttga
gi|4 : cttccggaattctaaattatacatttttggtttaattttatgcaatttttaaaataaatacgcaccgtaaaattatatattaattatttcttaaccgataaacgatactattttgatcaaaaattaacgttttctgtcaaataaacactttaatgaataccgagaacgaggcttccaaaataagcacctggatgtgcgtgtatgttataactgtgcagtcggcatgtttttaacaaacaagggaggagtggcaatgttgacttggcttgccgtctgatatcgcatacgataataacagtctatggtttagtcgtattacacatatcagacggcaggccagtctaatagtgcatgaagtgaaagagaagaaaattgtgttccgcgtagtgggtttaatgccaatacacacggatccacaaagacccaacatcaaagggaaaccgcgcactccagacacacgagatatatctgaaagaaaatttaataatcgaacctatttgtttgtttgttttgtttgttgttttttagtttgaattttctttttatctgttcatgatattaataactctcttaaaatgttcgcacccccctctctctctctacattgaatgaat-GG--GA--GGGTGTGTA-GATAATATCCCCCCCCCCCCCCCCCCG-GAGTTTATGT-CAAGCG-CATCGATTACACAATATTTTCGTGTAAGTTTTA-TAAATAA----------C------------------AGTG----------GAAAG-GTTACAGAGATGGCATTTT-------------------------AT-ATT-TGATAAGATTAATGGTTTTTTTGTAAGACTTTGA-----------------------ACTTGTA-------------G-------------TTTTA---GCATT-TCATT----------ACGTGCTGTTTAAAC-TA-ACCGGATTCTTATATTTGT-CGATAAGCTCGGAAGTC-----A-----TGAAAAAACTTACATTATCAT-T-TA---CGAC-ATATAATAATCGTCT----TGTTCATTATAAAAAA--AA-AAAT-GACCCTTCT----CTGTG-CG-GC-ACGTGTCG---G----------GAAAAGGGTAGCGACAGAG-CCCGGGTGGAATAT--TACTAGAATTAAGAC-C-----G----C-ATT---CGAGCGAAACCCAGATTT--G-G-CGCTTCATTTTGAAG---TCTT-TAACCAAGTTATACAACACAAAAGTAAAAA-AGT--A-AAACATGTCAAGTTTTTCTTAAG-CTCTT-TAATGGACTTTTGAT---ATGAAGGTATGGTAACAC
gi|5 : gcagGGAAGT--AGAT-ACA-CATTTTT--G-TATCATTT---ATGC-ATTT-TT-AAAAA---TTAAATAC-AACGATAAAA-TTAGT-T-TCAATTA-TTCTTAACCGATAA-CGATA-TATATTGA-CATAAAAA-TAA-------CGTTTT---CCGT-AA-ATGAA---AT-ACCTTT---G-ATTACC-----TAGTAAC----GATGGCT-T--CAAAA-TCAA-CAGC-CAGGATGTG---A-------CATTA--TTAC--C---AC--TGCA-TGGGCA--GTG-TTTTAA-C-AACA---AGGAAGAGAGT-GGCATG--TTGACT--GGGTTAAGCCGTTTTGATACTCTGCTACTTACGATAAA--CAGT---TGTT-AGCG-TAA---TACTAC--AAATATT--AT------A-GCACAGGCAGTCT-----AA-G---AGTGAC--C------AT-GG-AG-TG--A-A-AG-C-A-G-AGAA-AATTATATAAA---CG--ACGAG-ATCT----CGTGTTCCCAT--GGTTAAGTTCGGTTTTAATAGCCAAT-AC----ACA----C-G------G-ATC-CAC-AAAGAC--CCG-CATTCAAAGGCAC--CC-GCG-----CC-AC----TCCAGAC---------A--------ACGACGATTAA--TATCTG--AAAGAAAAA-TTTACAA-ATCGAAACCCC----ATTCTTAATATTCTATTT-GTTTGTT-TTT-TCT-TGTTTTGTTT-T----T---A-TTGAATTTTCTTTT--TA----CT----------TTTATTATATATAATAAGACATTCATAAAATTTCC-C-CCCCCCCCT------CTCTCTCTCT---CTACATTGGAA-TG-A--TAACAATGAT-TA-AA-CAAT--G-AAAAA------------ATA--C-TGCTAAATATAAGTCGCGGAGATATAT--CTGA--TAT-C-AAAA-CAGAT-ACTT-C-TGCCT--GTCATAACCCCTTTT-CCG-TAG----AAGTTAAA------------CAGAacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttccacatggcatagtcagatagtacttcaagtacaattcaattcttattggaccaaattaagtgcccccaaagggcaatatgaaggtgtacaatggtataacatcccgttgttgcacgtgctagaggacaattgtgaataacacaggtgt
gi|6 : tccaGAGCC--AAAT-AT--CATTTTTTGG-T-TTATTT-TA-TGCCATTTGTTGAAAAA---T-AAATACCAATT----AA-TTG-T-C-TTAATTA-TTCT-------TAAACGATA-TAT-TTGA-CA--AAAA-TAAATAGTGTAGTTGTGCACC-T-AATAT-TATCCAC-ACTTTTCATG-ATAACT-----GAG-AACGGTGGA-GGCTGTTGCAAAATATAA-GA-CAC-GGATGTG---GAACGTTCCAT-ATTTTATTCA---AC--TGTA-CG
gi|6 : gaaCATGCT----CAA-AGAAAAGAAAAGTGCACATAT-GG-AGGTGTGA-AGAG-AGA-T-AGAA-AA--AAATAAAAACCGTAAGGAG-ATGCGGGGTGTATCCCTGC--G--TA-GT--GGCTTT-TT-GCCAATCACATCTACA----C-G------G-ATC-CTCAAAAGACAACCAAACTTAAA-GGGAACTCT-GCG-----CCAACAGTTTTCGTACT--------AACCATTC-ATGA-GAT--A--TATCTG--AAAGttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaacatgctcaaagaaaagaaaagtgcacatatggaggtgtgaagagagatagaaaaaaataaaaaccgtaaggagatgcggggtgtatccctgcgtagtggctttttgccaatcacatctacacggatcctcaaaagacaaccaaacttaaagggaactctgcgccaacagttttcgtactaaccattcatgagatatatctgaaag
gi|7 : gaagagccaaatatcattttttggtttattttatgccatttgttgaaaaataaataccaattaattgtcttaattattcttaaacgatatatttgacaaaaataaatagtgtagttgtgcacctaatattatccacacttttcatgataactgagaacggtggaggctgttgcaaaatataagacacggatgtggaacgttccatattttattcaactgtacgttggaccatctattctcaccacttgcgagcgcgacaggataaacagtttgaaagaatatctgacctaagtgggcagtttcttgatgatattcagaggaagaaaATG--G-AGAG-A-AAG-AGAA-GA--AAATAAA---CG--AAGAT-ATCT----CGTGTTTC-GC--A--TA-GT--GGCTTTATT-GCCAAT-AT----ACA----C-G------G-ATC-CAC-AAAGAC--CCAACATCAAAGGGAAC--CC-GTG-----C--AC----TCCAGAC---------A------C-ACGA-GAT--A--TATCTG--GAAAAAAAA---TACTA-ATCG-AACCCC----ACTCTTTGT-TTTTTTTTCAATTTTC---T-TTT-TA-TCTGTTTATGATATT-GA-T--AATTTCTCCTT--T-----CT----------T----------T-------CTCTCTTAAAATTTT--CACCCC-------------CTCTCTTT---CTACAT------------------T--T-TA-AAGCAAT--GAAAAAAAAATATCG-AC-AAA--CTTGCTAAATATA--TC-C---G-TATAT--------TC--C-AAAA-C-GAT-GCCT-CGTGCCC--
gi|7 : gagtgcCCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTAAAAATCCATATGTA-------------TTTTTTT-GCATTATTATTTACCCAacccgtaagtttatgtcaagcggcatcgattacacaaaattttcatgtacgttttatgaataaacagtggaaaaggtatacggagtgcatttttattgataagtacgtatactcgtaatggtattttgtcagacttggaacttttaaaaatccatatgtatttttttgcattattatttaccca
gi|8 : gagtgcatggagagaaagagaagaaaataaacgaagatatctcgtgtttcgcatagtggctttattgccaatatacacggatccacaaagacccaacatcaaagggaacccgtgcactccagacacacgagatatatctggaaaaaaaatactaatcgaaccccactctttgtttttttttcaattttctttttatctgtttatgatattgataatttctcctttctttctctcttaaaattttcaccccctctctttctacattttaaagcaatgaaaaaaaaatatcgacaaacttgctaaatatatccgtatattccaaaacgatgcctcgtgCCACCCGTAAGTTTATGT-CAAGCGGCATCGATTACACAAAATTTTCATGTACGTTTTA-TGAATAA---------ACAGTGGAAAAGGTATACGGAGTGCATTTTTATTGATAA-GTAC--------G-----T-------------------------AT-ACT-CG-------TAATGGTATTTT-GTCAGACTTGGA-----------------------ACTTTTA-------------AAAATCCATATGTATTTTTTT-GCATTATTATTTACCCACTTCATGTGCTGT---AA------CCG-ACTTTTAT-TTTTTTCGATAAGCTCGGAATTC-----ACGAAAT----AAACTTACAATATCATGT-AC---CGACTATA--ATAATCGTTT-------------------------GAAT-GATCCTTCT----CTG-GGCG-GT-AC----CG---A----------GA------------C-GAGGCCCGGGTGGAAT----TA---GATCTAAGAC-TCGTCTG---GC-ATT---CGAGCGAAACCCTGATTT--TCGCCGCTTCA--TCGAAGAGATATG--AATAAAG-TCTGTAAC-C--AAGTATAAA-AA---A-A-----GTCAAG-TTTTCTTCAGCTTCTTCT--TGGAC-TTTGAT---ATGAA-GTATGGT-ACAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCGCTGAATAGTCAATAAGTACTATACAAGATACAATTCAATTCGTTATATGATCAAATTTTTTCCCAATAAAAATAGGGCAATAAGAAGGTGTAACCAACTAGTTAAGCATCCCGTGTTGGCACGTCGGCCTTGATAAATAACCAGGTGT