lowQualScore : 1111111111111111111
lowQualScore : 2 8888888888888888888 1 333333333333333333333333 1
lowQualScore : 4 6 4 3 2 9999999999999999999 6666 2 2 1 5555 2 5555 000000000000000000000000 2 3 2 0 6
lowQualScore : . . . . . ................... .... . . . .... . .... ........................ . . . . .
lowQualScore : 6 7 7 3 5 7777777777777777777 1111 4 4 8 0000 5 0000 222222222222222222222222 4 6 4 5 2
consensus : TTTCAAG-ATTTTNATCAGTCCGAAT--------------AAT--GAAATGTAC----CGTGAACTTT-ACCGG-TCC-GAG----GAAAT----TTTAAC-----N-----AGTCAA----A--T-CCTTCGGACTGG-TAAATTTCA-AGAACA
Reference ( gi|10 ) : TTTCAGG-ATTATTATCAGTCCAAATTNNNNNNNNNNNNNNNN--GAAATGTAC----TGTGAACTTT-ACCAG-TCC-AAG----GAAAT----TTTAAC-----A-----AGTCAA----A--T-CCTTTGGACTGG-TAGATTTCA-AGAACA
gi|1 : TTTCAAG-ATTTAAATCAGTCTACACTTATGTGAATAAT------GAAATGTAC----TGTGAACTTT-ACCAG-TGC---G----GAAAT----TTTATC-----------AGTTAA----A--T-CCTTCGGTCTGG-TAATTTTCA-AGA
gi|4 : gttcttgaaatctacttctgtgtacatatcagacattgacaTTTCACG-ATT-TGATCAGTCCGAAT--------------AAT--GATTTGGGC----CATAAACTTTGACCAG-TCC-AAG----GAAAC----TTCAAC-----A-----AGTCAA----A--T-CCTTCGGACTAG-TAAATATCA-AGAACA
gi|5 : gagtttttgaaatacatttccgtgatatcggataTTTCAAGTATT-TTATCAGTCCAAAT--------------AAT--GAAATGTTC----TGTGAACTTc
gi|11 : catagatagctgtatacagccagagttcctgtggtatcagacaTCAGG-GTTTTGATCAGTCCGAAT--------------AAT--GAAATGCAC----CGTGAACTTT-ACCAG-TCC-GAG----GGAATTTAATTCAAC-----C-----AGTCAA----A--T-CATTCGGAGTGA-TAAATTTCA-gatcctttggacttttaaatttcaagaacactataaagcaact
gi|3 : aCAAG-ATTTTTATCA-TCCGAAT--------------GAT--GAAATGTAC----TGTGAACTTT-ACCGG-TCC-AAG----GAAAT----TTTAAT-----C-----ATTAAA----A--T-CCTTCGGACAGG-CA-ATTTTT-AAAACAc
gi|12 : tgtttttgaaattatctacttttgtggtatcagacaattcattgaG-ATTTTTATCACTCCAAAT--------------ACA--GAGATGTAC----TGCAAACTTC-ACTGG-TCT-AAA----GAAAC----TTTGAC-----C-----AGTCAA----A--T-CTTTTGGATTAG-TTAATTTCA-AAAACA
gi|6 : aTCCAAATTTTCCTCGGTCCAAATAATGAGATATACCAGTTGTGAACTTG-ACCGA-CTT-GAA----GAAAC----TTTAAC-----T-----AGTCAA----A--T-CCTTCGGATTGG-Tc
gi|16 : gagctcttgaaatttacttttgtggtaacagacatt--GAAATGCAC----TGTGAACTTT-ACCAG-TCC-GAG----GAAAT---------C-----A----------------------TTCGGACTGG-TAAATTTC
gi|14 : aat--GAAATGCAC----TGTGAACTTT-TTTTGATCG-AAG----AAAAT----TTTA----------------------------CCTTCTGACCGG-CGAATTTC
gi|8 : ataatAATGTAC----AATGAACTTT-ACCAG-TCT-GCG----GAAAT----TTCAAT-----C-----AGTC----------------GGATTGG-TAAACTTCA-AGAAt
gi|13 : gagtttttaaattgcatttctatagtattagatatttaaagattttaataattatagtgcAATGTAC----CATAAACTTT-ACCAG-CCT-GTG----GAAAG----TTAAAC-----A-----A----------------TTCGGATTGG-TTAACTTCA-AGAA
gi|7 : tgtATGTCC----AATGAACTTT-AT-AT-TCTTAAG----AAAAT----TTTAA------ATT---AGTCAA-------T-CCTTAGCACTGGGTAAATT-CA-AGAACA
gi|4 : acagttcttgaaaatatatacgtggtatcagacattttgagatttatcgTGTTC----T-TGATATTT-ACTAG-TCCGAAG----GA-------TTTGAC-----T-----TGTTGA----AGTT-TCCTTGGACTGG-Tct
gi|2 : gagtttttgaaatacatttccgtgatatcggatatttcacgatttgatcagtccgaataatgatttgggccataaactttg----TGTGAACTTG-ATCGG-TTC-AAG----GAAAT----TTTAAC-----AGTCAGAATCAA----A--T-CCTTCAGACTGG-TA-ATTTTA-AGAACAc
gi|1 : gttactgaaaatatccagcttttatatattatcataaatttatttaaaaattttattaactccaaaataatgaaactTGAAAATT-ACCAG-ACCGAAG----GA-------TTTAAC-----T-----GATAAA----A--T-T-TCCGCACTGG-TAAAGTTCACAGTACA
gi|11 : gttcttgaaatctacttctgtgtacatatcagacattgacatttcaagatttaaatcagtctacacttatgtgaataatgaaaTGAAATTT-ATCAC-TCCGAAT----GA-------TTTGACTGGTTG-----AATTAA----A--TTCCCTCGGACTGG-TAAAGTTCA-aga
gi|5 : atcagggttttgatcagtccgaataatgaaatgcaccgATTTT-ATCAG-TCC-AAATAATGAAAT----GTT--C-----T------GTGAACTTGA--T-CCTTTGGACTTT-TAAATTTCA-AGAACAac
gi|3 : catagatagctgtatacagccagagttcctgtggtatcagacatttcaagtTT-GCCTG-TCCGAAG----GA--T----TTTAAT-----G-----ATTAAA----AT-T-TCCTTGGACCGG-TAAAGTTCACAGTACActataaagcaact
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): ATAGTTTTTGAAATGCAATTTTTGCATGATGGATATTTGATCAAATTAATCAATTCAAACACCGAAGTGTTTCGGATGAATTTTGGGTGGATATTTTCACATGTTAACCTTCAGACAAACAC
Unaligned ( gi|15 ): AGAGTTCTTGAAATTTAATTTTGTGGTACCAGACATTTCAAGATTTTTATCTGTTAGTCCAAATAA
Unaligned ( gi|17 ): TAATTATTTGTTATGAAAATATCCAGCTTTAATTATCATA
Alignments
lowQualScore : 11111111111 11111111111111 11111111
lowQualScore : 3 4 7777 1 66666666666 3 88888888888888 99999 2 2 555 6666 1 33333333 1 0 44 0 2
lowQualScore : . . .... . ........... . .............. ..... . . ... .... . ........ . . .. . .
lowQualScore : 6 5 7777 4 99999999999 3 11111111111111 44444 9 9 555 1111 3 99999999 9 1 44 1 9
consensus : TTTCAAG-ATTTTNATC----AGTCC----------GAA-T--------------AATGAAATGTACC----GTGAAC-TTT-ACCGGTCC--GAGGAAAT----TTTAA-C-----CAGTCAAATCCTTCGGACTGG-TAAATTTCAAGAACA
Reference ( family-325 ) : TTTCAAG-ATTTTNATC----AGTCC----------GAA-T--------------AATGAAATGTACC----GTGAAC-TTT-ACCGGTCC--GAGGAAAT----TTTAA-C-----NAGTCAAATCCTTCGGACTGG-TAAATTTCAAGAACA
gi|1 : TTTCAAG-ATTTAAATC----AGTCTACACTTATGTGAA-T--------------AATGAAATGTACT----GTGAAC-TTT-ACCAGT----GCGGAAAT----TTT-A-T-----CAGTTAAATCCTTCGGTCTGG-TAATTTTCAAGA
gi|10 : gttcttgaaatctacttctgtgtacatatcagacattgacaTTTCAGG-ATTATTATC----AGTCC----------AAA-TTNNNNNNNNNNNNNNNNGAAATGTACT----GTGAAC-TTT-ACCAGTCC--AAGGAAAT----TTTAA-C-----AAGTCAAATCCTTTGGACTGG-TAGATTTCAAGAACA
gi|11 : TCAGG-GTTTTGATC----AGTCC----------GAA-T--------------AATGAAATGCACC----GTGAAC-TTT-ACCAGTCC--GAGGGAATTTAATTCAA-C-----CAGTCAAATCATTCGGAGTGA-TAAATTTCAA
gi|12 : aAG-ATTTTTATC----ACTCC----------AAA-T--------------ACAGAGATGTACT----GCAAAC-TTC-ACTGGTCT--AAAGAAAC----TTTGA-C-----CAGTCAAATCTTTTGGATTAG-TTAATTTCAAAAACAc
gi|13 : TGTAATGTACC----ATAAAC-TTT-ACCAGCCT--GTGGAAAG----TTAAA-C-----AA---------TTCGGATTGG-TTAACTTCAAGAAc
gi|14 : A-T--------------AATGAAATGCACT----GTGAACTTTT-TTTGATCG--AAGAAAAT----TTTA-----------------CCTTCTGACCGG-CGAATTTC
gi|15 : TTTCAAG-ATTTTTATCTGTTAGTCC----------AAA-T--------------AAt
gi|16 : agagttcttgaaatttaattttgtggtaccagaca--------------AATGAAATGCACT----GTGAAC-TTT-ACCAGTCC--GAGGAAA--------------------TCA-----TTCGGACTGG-TAAATTTC
gi|2 : TTTAAAA-ATTTTATTA----ACTCC----------AAAAT--------------AATGAAACTT-------GTGAAC-TTG-ATCGGTTC--AAGGAAAT----TTTAA-CAGTCAGAATCAAATCCTTCAGACTGG-T-AATTTTAAGAACA
gi|3 : gttactgaaaatatccagcttttatatattatcataaatttaCAAG-ATTTTTATC----A-TCC----------GAA-T--------------GATGAAATGTACT----GTGAAC-TTT-ACCGGTCC--AAGGAAAT----TTTAA-T-----CATTAAAATCCTTCGGACAGG-CAATTTTTAA-AACA
gi|4 : tgtttttgaaattatctacttttgtggtatcagacaattcattgaTTTCACG-ATTT-GATC----AGTCC----------GAA-T--------------AATGATTTGGGCC----ATAAAC-TTTGACCAGTCC--AAGGAAAC----TTCAA-C-----AAGTCAAATCCTTCGGACTAG-TAAATATCAAGAACA
gi|5 : gagtttttgaaatacatttccgtgatatcggataTTTCAAGTATTTT-ATC----AGTCC----------AAA-T--------------AATGAAATGTTCT----GTGAAC-TT-----GATCC---------T----TT------------------------GGACTTT-TAAATTTCAAGAACAc
gi|6 : catagatagctgtatacagccagagttcctgtggtatcagacaTTTCCAA-ATTTTCCTC----GGTCC----------AAA-T--------------AATGAGATATACCAGTTGTGAAC-TTG-ACCGACTT--GAAGAAAC----TTTAA-C-----TAGTCAAATCCTTCGGATTGG-ctataaagcaact
gi|7 : gagctcttgaaatttacttttgtggtaacagacaATGTCCA----ATGAAC-TTT-AT--ATTCTTAAGAAAAT----TTTAAAT-----TAGTCAA-TCCTTAGCACTGGGTAAATT-CAAGAACA
gi|8 : acagttcttgaaaatatatacgtggtatcagacattttgagatttatcgTTTAAAG-ATTTTAATA----ATT--------------A-T--------------AGTGCAATGTACA----ATGAAC-TTT-ACCAGTCT--GCGGAAAT----TTCAA-T-----CAG---------TCGGATTGG-TAAACTTCAAGAAct
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAGTTTTTGAAATGCAATTTTTGCATGATGGATATTTGATCAAATTAATCAATTCAAACACCGAAGTGTTTCGGATGAATTTTGGGTGGATATTTTCACATGTTAACCTTCAGACAAACAC
Unaligned ( gi|17 ): TAATTATTTGTTATGAAAATATCCAGCTTTAATTATCATA
Alignments
lowQualScore : 11111111111 11111111111111 111111111111111
lowQualScore : 3 4 7777 1 66666666666 3 88888888888888 99999 2 2 555 6666 1 555555555555555 0 2
lowQualScore : . . .... . ........... . .............. ..... . . ... .... . ............... . .
lowQualScore : 6 5 7777 4 99999999999 3 11111111111111 44444 9 9 555 1111 3 444444444444444 1 9
consensus : TTTCAAG-ATTTTNATC----AGTCC----------GAA-T--------------AATGAAATGTACC----GTGAAC-TTT-ACCGGTCC--GAGGAAAT----TTTAA-C---CAG--TCAAATCCTTCGGACTGG-TAAATTTCAAGAACA
Reference ( family-325 ) : TTTCAAG-ATTTTNATC----AGTCC----------GAA-T--------------AATGAAATGTACC----GTGAAC-TTT-ACCGGTCC--GAGGAAAT----TTTAA-C---CAG--TCAAATCCTTCGGACTGG-TAAATTTCAAGAACA
gi|1 : TTTCAAG-ATTTAAATC----AGTCTACACTTATGTGAA-T--------------AATGAAATGTACT----GTGAAC-TTT-ACCAGT----GCGGAAAT----TTT-A-T---CAG--TTAAATCCTTCGGTCTGG-TAATTTTCAAGA
gi|10 : gttcttgaaatctacttctgtgtacatatcagacattgacaTTTCAGG-ATTATTATC----AGTCC----------AAA-TTNNNNNNNNNNNNNNNNGAAATGTACT----GTGAAC-TTT-ACCAGTCC--AAGGAAAT----TTTAA-C---AAG--TCAAATCCTTTGGACTGG-TAGATTTCAAGAACA
gi|11 : TCAGG-GTTTTGATC----AGTCC----------GAA-T--------------AATGAAATGCACC----GTGAAC-TTT-ACCAGTCC--GAGGGAATTTAATTCAA-C---CAG--TCAAATCATTCGGAGTGA-TAAATTTCAA
gi|12 : aAG-ATTTTTATC----ACTCC----------AAA-T--------------ACAGAGATGTACT----GCAAAC-TTC-ACTGGTCT--AAAGAAAC----TTTGA-C---CAG--TCAAATCTTTTGGATTAG-TTAATTTCAAAAACAc
gi|13 : TGTAATGTACC----ATAAAC-TTT-ACCAGCCT--GTGGAAAG----TTAAA-----------CAA----TTCGGATTGG-TTAACTTCAAGAAc
gi|14 : A-T--------------AATGAAATGCACT----GTGAACTTTT-TTTGATCG--AAGAAAAT----TTTA-----------------CCTTCTGACCGG-CGAATTTC
gi|15 : TTTCAAG-ATTTTTATCTGTTAGTCC----------AAA-T--------------AAt
gi|16 : agagttcttgaaatttaattttgtggtaccagaca--------------AATGAAATGCACT----GTGAAC-TTT-ACCAGTCC--GAGGAAAT--------------CA-----------TTCGGACTGG-TAAATTTC
gi|2 : TTTAAAA-ATTTTATTA----ACTCC----------AAAAT--------------AATGAAACTT-------GTGAAC-TTG-ATCGGTTC--AAGGAAAT----TTTAA-CAGTCAGAATCAAATCCTTCAGACTGG-T-AATTTTAAGAACA
gi|3 : gttactgaaaatatccagcttttatatattatcataaatttaCAAG-ATTTTTATC----A-TCC----------GAA-T--------------GATGAAATGTACT----GTGAAC-TTT-ACCGGTCC--AAGGAAAT----TTTAA-T---CAT--TAAAATCCTTCGGACAGG-CAATTTTTAA-AACA
gi|4 : tgtttttgaaattatctacttttgtggtatcagacaattcattgaTTTCACG-ATTT-GATC----AGTCC----------GAA-T--------------AATGATTTGGGCC----ATAAAC-TTTGACCAGTCC--AAGGAAAC----TTCAA-C---AAG--TCAAATCCTTCGGACTAG-TAAATATCAAGAACA
gi|5 : gagtttttgaaatacatttccgtgatatcggataTTTCAAGTATTTT-ATC----AGTCC----------AAA-T--------------AATGAAATGTTCT----GTGAAC-TT-----GATCC---------T----TT------------------------GGACTTT-TAAATTTCAAGAACAc
gi|6 : catagatagctgtatacagccagagttcctgtggtatcagacaTTTCCAA-ATTTTCCTC----GGTCC----------AAA-T--------------AATGAGATATACCAGTTGTGAAC-TTG-ACCGACTT--GAAGAAAC----TTTAA-C---TAG--TCAAATCCTTCGGATTGG-ctataaagcaact
gi|7 : gagctcttgaaatttacttttgtggtaacagacaATGTCCA----ATGAAC-TTT-AT--ATTCTTAAGAAAAT----TTTAAAT---TAG--TCAA-TCCTTAGCACTGGGTAAATT-CAAGAACA
gi|8 : acagttcttgaaaatatatacgtggtatcagacattttgagatttatcgTTTAAAG-ATTTTAATA----ATT--------------A-T--------------AGTGCAATGTACA----ATGAAC-TTT-ACCAGTCT--GCGGAAAT----TTCAA-T---CAG-----------TCGGATTGG-TAAACTTCAAGAAct
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAGTTTTTGAAATGCAATTTTTGCATGATGGATATTTGATCAAATTAATCAATTCAAACACCGAAGTGTTTCGGATGAATTTTGGGTGGATATTTTCACATGTTAACCTTCAGACAAACAC
Unaligned ( gi|17 ): TAATTATTTGTTATGAAAATATCCAGCTTTAATTATCATA
Alignments
lowQualScore : 11111111111 11111111111111 111111111111111
lowQualScore : 3 4 7777 1 66666666666 3 88888888888888 99999 2 2 555 6666 1 555555555555555 0 2
lowQualScore : . . .... . ........... . .............. ..... . . ... .... . ............... . .
lowQualScore : 6 5 7777 4 99999999999 3 11111111111111 44444 9 9 555 1111 3 444444444444444 1 9
consensus : TTTCAAG-ATTTTNATC----AGTCC----------GAA-T--------------AATGAAATGTACC----GTGAAC-TTT-ACCGGTCC--GAGGAAAT----TTTAA-C---CAG--TCAAATCCTTCGGACTGG-TAAATTTCAAGAACA
Reference ( family-325 ) : TTTCAAG-ATTTTNATC----AGTCC----------GAA-T--------------AATGAAATGTACC----GTGAAC-TTT-ACCGGTCC--GAGGAAAT----TTTAA-C---CAG--TCAAATCCTTCGGACTGG-TAAATTTCAAGAACA
gi|1 : TTTCAAG-ATTTAAATC----AGTCTACACTTATGTGAA-T--------------AATGAAATGTACT----GTGAAC-TTT-ACCAGT----GCGGAAAT----TTT-A-T---CAG--TTAAATCCTTCGGTCTGG-TAATTTTCAAGA
gi|10 : gttcttgaaatctacttctgtgtacatatcagacattgacaTTTCAGG-ATTATTATC----AGTCC----------AAA-TTNNNNNNNNNNNNNNNNGAAATGTACT----GTGAAC-TTT-ACCAGTCC--AAGGAAAT----TTTAA-C---AAG--TCAAATCCTTTGGACTGG-TAGATTTCAAGAACA
gi|11 : TCAGG-GTTTTGATC----AGTCC----------GAA-T--------------AATGAAATGCACC----GTGAAC-TTT-ACCAGTCC--GAGGGAATTTAATTCAA-C---CAG--TCAAATCATTCGGAGTGA-TAAATTTCAA
gi|12 : aAG-ATTTTTATC----ACTCC----------AAA-T--------------ACAGAGATGTACT----GCAAAC-TTC-ACTGGTCT--AAAGAAAC----TTTGA-C---CAG--TCAAATCTTTTGGATTAG-TTAATTTCAAAAACAc
gi|13 : TGTAATGTACC----ATAAAC-TTT-ACCAGCCT--GTGGAAAG----TTAAA-----------CAA----TTCGGATTGG-TTAACTTCAAGAAc
gi|14 : A-T--------------AATGAAATGCACT----GTGAACTTTT-TTTGATCG--AAGAAAAT----TTTA-----------------CCTTCTGACCGG-CGAATTTC
gi|15 : TTTCAAG-ATTTTTATCTGTTAGTCC----------AAA-T--------------AAt
gi|16 : agagttcttgaaatttaattttgtggtaccagaca--------------AATGAAATGCACT----GTGAAC-TTT-ACCAGTCC--GAGGAAAT--------------CA-----------TTCGGACTGG-TAAATTTC
gi|2 : TTTAAAA-ATTTTATTA----ACTCC----------AAAAT--------------AATGAAACTT-------GTGAAC-TTG-ATCGGTTC--AAGGAAAT----TTTAA-CAGTCAGAATCAAATCCTTCAGACTGG-T-AATTTTAAGAACA
gi|3 : gttactgaaaatatccagcttttatatattatcataaatttaCAAG-ATTTTTATC----A-TCC----------GAA-T--------------GATGAAATGTACT----GTGAAC-TTT-ACCGGTCC--AAGGAAAT----TTTAA-T---CAT--TAAAATCCTTCGGACAGG-CAATTTTTAA-AACA
gi|4 : tgtttttgaaattatctacttttgtggtatcagacaattcattgaTTTCACG-ATTT-GATC----AGTCC----------GAA-T--------------AATGATTTGGGCC----ATAAAC-TTTGACCAGTCC--AAGGAAAC----TTCAA-C---AAG--TCAAATCCTTCGGACTAG-TAAATATCAAGAACA
gi|5 : gagtttttgaaatacatttccgtgatatcggataTTTCAAGTATTTT-ATC----AGTCC----------AAA-T--------------AATGAAATGTTCT----GTGAAC-TT-----GATCC---------T----TT------------------------GGACTTT-TAAATTTCAAGAACAc
gi|6 : catagatagctgtatacagccagagttcctgtggtatcagacaTTTCCAA-ATTTTCCTC----GGTCC----------AAA-T--------------AATGAGATATACCAGTTGTGAAC-TTG-ACCGACTT--GAAGAAAC----TTTAA-C---TAG--TCAAATCCTTCGGATTGG-ctataaagcaact
gi|7 : gagctcttgaaatttacttttgtggtaacagacaATGTCCA----ATGAAC-TTT-AT--ATTCTTAAGAAAAT----TTTAAAT---TAG--TCAA-TCCTTAGCACTGGGTAAATT-CAAGAACA
gi|8 : acagttcttgaaaatatatacgtggtatcagacattttgagatttatcgTTTAAAG-ATTTTAATA----ATT--------------A-T--------------AGTGCAATGTACA----ATGAAC-TTT-ACCAGTCT--GCGGAAAT----TTCAA-T---CAG-----------TCGGATTGG-TAAACTTCAAGAAct
blockSeqs : T T TGTT G A A TNNNNNNNNNNNNN CAGTT T G TTA TTAA T CAGTCAGAATCAAA G
blockSeqs : . G . G G . . T . . A . C CAAGTCAAA .
blockSeqs : . T . C A . . C . . G . T CCAGTCAAA .
blockSeqs : . T . G A . . T . . A . A CCAGTCAAA .
blockSeqs : . A . C A . . C . . G . T TCATTAAAA .
blockSeqs : . T . G G . . T . . A . T CAAGTCAAA .
blockSeqs : . G . G G . . T . . G . T CTAGTCAAA .
blockSeqs : . C . G A . . T . . A . C ATTAGTCAA .
blockSeqs : . A . T A . . C . . A . T TCAG .
blockSeqs : . . . . . . . T . . A . T CAA .
blockSeqs : . . A . . G . C CA .
blockSeqs : . A . . G . . . .
blockSeqs : . . . . . . . .
blockSeqCons : A**********
originalCons : TTTCAAG-ATTTTNATC----AGTCC----------GAA-T--------------AATGAAATGTACC----GTGAAC-TTT-ACCGGTCC--GAGGAAAT----TTTAA-C---CAG--TCAAATCCTTCGGACTGG-TAAATTTCAAGAACA
finalCons : TTTCAAG-ATTTTNATC----AGTCCA----------AA-T--------------AATGAAATGTACC----GTGAAC-TTT-ACCGGTCC--GAGGAAAT----TTTAA-C---CAG--TCAAATCCTTCGGACTGG-TAAATTTCAAGAACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAGTTTTTGAAATGCAATTTTTGCATGATGGATATTTGATCAAATTAATCAATTCAAACACCGAAGTGTTTCGGATGAATTTTGGGTGGATATTTTCACATGTTAACCTTCAGACAAACAC
Unaligned ( gi|17 ): TAATTATTTGTTATGAAAATATCCAGCTTTAATTATCATA
Alignments
lowQualScore : 1111111111 11111111111111 111111111111111
lowQualScore : 3 4 7777 1 5555555555 3 88888888888888 99999 2 2 555 6666 1 555555555555555 0 2
lowQualScore : . . .... . .......... . .............. ..... . . ... .... . ............... . .
lowQualScore : 6 5 7777 4 9999999999 3 11111111111111 44444 9 9 555 1111 3 444444444444444 1 9
consensus : TTTCAAG-ATTTTNATC----AGTCCG----------AA-T--------------AATGAAATGTACC----GTGAAC-TTT-ACCGGTCC--GAGGAAAT----TTTAA-C---CAG--TCAAATCCTTCGGACTGG-TAAATTTCAAGAACA
Reference ( family-325 ) : TTTCAAG-ATTTTNATC----AGTCCA----------AA-T--------------AATGAAATGTACC----GTGAAC-TTT-ACCGGTCC--GAGGAAAT----TTTAA-C---CAG--TCAAATCCTTCGGACTGG-TAAATTTCAAGAACA
gi|1 : TTTCAAG-ATTTAAATC----AGTCTACACTTATGTGAA-T--------------AATGAAATGTACT----GTGAAC-TTT-ACCAGT----GCGGAAAT----TTT-A-T---CAG--TTAAATCCTTCGGTCTGG-TAATTTTCAAGA
gi|10 : gttcttgaaatctacttctgtgtacatatcagacattgacaTTTCAGG-ATTATTATC----AGTCCA----------AA-TTNNNNNNNNNNNNNNNNGAAATGTACT----GTGAAC-TTT-ACCAGTCC--AAGGAAAT----TTTAA-C---AAG--TCAAATCCTTTGGACTGG-TAGATTTCAAGAACA
gi|11 : TCAGG-GTTTTGATC----AGTCCG----------AA-T--------------AATGAAATGCACC----GTGAAC-TTT-ACCAGTCC--GAGGGAATTTAATTCAA-C---CAG--TCAAATCATTCGGAGTGA-TAAATTTCAA
gi|12 : aAG-ATTTTTATC----ACTCCA----------AA-T--------------ACAGAGATGTACT----GCAAAC-TTC-ACTGGTCT--AAAGAAAC----TTTGA-C---CAG--TCAAATCTTTTGGATTAG-TTAATTTCAAAAACAc
gi|13 : TGTAATGTACC----ATAAAC-TTT-ACCAGCCT--GTGGAAAG----TTAAA-----------CAA----TTCGGATTGG-TTAACTTCAAGAAc
gi|14 : A-T--------------AATGAAATGCACT----GTGAACTTTT-TTTGATCG--AAGAAAAT----TTTA-----------------CCTTCTGACCGG-CGAATTTC
gi|15 : TTTCAAG-ATTTTTATCTGTTAGTCCA----------AA-T--------------AAt
gi|16 : agagttcttgaaatttaattttgtggtaccagaca--------------AATGAAATGCACT----GTGAAC-TTT-ACCAGTCC--GAGGAAAT--------------CA-----------TTCGGACTGG-TAAATTTC
gi|2 : TTTAAAA-ATTTTATTA----ACTCCA----------AAAT--------------AATGAAACTT-------GTGAAC-TTG-ATCGGTTC--AAGGAAAT----TTTAA-CAGTCAGAATCAAATCCTTCAGACTGG-T-AATTTTAAGAACA
gi|3 : gttactgaaaatatccagcttttatatattatcataaatttaCAAG-ATTTTTATC----A-TCCG----------AA-T--------------GATGAAATGTACT----GTGAAC-TTT-ACCGGTCC--AAGGAAAT----TTTAA-T---CAT--TAAAATCCTTCGGACAGG-CAATTTTTAA-AACA
gi|4 : tgtttttgaaattatctacttttgtggtatcagacaattcattgaTTTCACG-ATTT-GATC----AGTCCG----------AA-T--------------AATGATTTGGGCC----ATAAAC-TTTGACCAGTCC--AAGGAAAC----TTCAA-C---AAG--TCAAATCCTTCGGACTAG-TAAATATCAAGAACA
gi|5 : gagtttttgaaatacatttccgtgatatcggataTTTCAAGTATTTT-ATC----AGTCCA----------AA-T--------------AATGAAATGTTCT----GTGAAC-TT-----GATCC---------T----TT------------------------GGACTTT-TAAATTTCAAGAACAc
gi|6 : catagatagctgtatacagccagagttcctgtggtatcagacaTTTCCAA-ATTTTCCTC----GGTCCA----------AA-T--------------AATGAGATATACCAGTTGTGAAC-TTG-ACCGACTT--GAAGAAAC----TTTAA-C---TAG--TCAAATCCTTCGGATTGG-ctataaagcaact
gi|7 : gagctcttgaaatttacttttgtggtaacagacaATGTCCA----ATGAAC-TTT-AT--ATTCTTAAGAAAAT----TTTAAAT---TAG--TCAA-TCCTTAGCACTGGGTAAATT-CAAGAACA
gi|8 : acagttcttgaaaatatatacgtggtatcagacattttgagatttatcgTTTAAAG-ATTTTAATA----ATT--------------A-T--------------AGTGCAATGTACA----ATGAAC-TTT-ACCAGTCT--GCGGAAAT----TTCAA-T---CAG-----------TCGGATTGG-TAAACTTCAAGAAct
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAGTTTTTGAAATGCAATTTTTGCATGATGGATATTTGATCAAATTAATCAATTCAAACACCGAAGTGTTTCGGATGAATTTTGGGTGGATATTTTCACATGTTAACCTTCAGACAAACAC
Unaligned ( gi|17 ): TAATTATTTGTTATGAAAATATCCAGCTTTAATTATCATA