lowQualScore : 11 33333 11111 22 444444444444444444444444 11 444 1 444 2 222 1 2 111 333333 2222222222 11 111 8888888 999999999999999999999999999 33333333 111 2 222222 1111 33333 1111 11 9999999999999999999999999999 333333 11 22222222 22222 11 1 1 11 444 111 22 2 1 3 4 11 11 33333 11 8888888888888888888888 1 111 1111 111 111111 222 66666666 11 11 22 2222222222222222 444444 11 1 111 222222 222 1 111 1111111 11 111 1111 33 3 111111 333 444444444444 1111 1 6666666666666 1 22222 1 3333333333 222222222222 11 222 1111 3333333333333333333333333
lowQualScore : 8 8 44 8 22222 0 77777 22 777777777777777777777777 3 33 777 0 3 6 6 3 777 3 0 444 2 5 1 6 222 888888 8 7777777777 22 666 8 0 0 9999999 11 44 0 0 444444444444444444444444444 33333333 444 4 88 88 8 888888 5555 22222 0 8 8 7777 0 8 11 5555555555555555555555555555 6 8 9 444444 3 8 8 6 88 1 33333333 0 5 33333 44 666 5 1 2 1 0 5 22 4 2 4 1 5 6 11 8 444 8 111 8 77 0 8 4 8 8 0 6 2 0 3 11 00 1 99999 11 8 4444444444444444444444 99 3 888 999 6 3333 111 1 111111 6 333 44444444 3 6 8 88 8 44 8 0 77 8 44 7777777777777777 6 6 6 666666 55 3 88888 6 000 6 000000 5 5 111 5 44 5 1 5 000 8888888 7 99 000 5 77 2222 5 5 0 22 5 77 5 5 5 77 5 5 5 1 1 444444 4 888 888888888888 7777 1 2222222222222 5 0 888 33333 4 1 4 2 2 4 66 4444444444 8 1 9999 4 777777777777 1 11 55 444 4 8 4 55 4 4 4 4 8888 66 9999999999999999999999999 8 88
lowQualScore : . . .. . ..... . ..... .. ........................ . .. ... . . . . . ... . . ... . . . . ... ...... . .......... .. ... . . . ....... .. .. . . ........................... ........ ... . .. .. . ...... .... ..... . . . .... . . .. ............................ . . . ...... . . . . .. . ........ . . ..... .. ... . . . . . . .. . . . . . . .. . ... . ... . .. . . . . . . . . . . .. .. . ..... .. . ...................... .. . ... ... . .... ... . ...... . ... ........ . . . .. . .. . . .. . .. ................ . . . ...... .. . ..... . ... . ...... . . ... . .. . . . ... ....... . .. ... . .. .... . . . .. . .. . . . .. . . . . . ...... . ... ............ .... . ............. . . ... ..... . . . . . . .. .......... . . .... . ............ . .. .. ... . . . .. . . . . .... .. ......................... . ..
lowQualScore : 0 0 00 0 22222 8 88888 44 111111111111111111111111 2 22 555 0 2 5 5 2 555 2 0 222 5 5 2 5 888 666666 0 0000000000 00 222 0 8 8 8888888 66 00 8 8 666666666666666666666666666 00000000 000 0 66 88 0 666666 2222 66666 8 0 0 0000 8 0 00 0000000000000000000000000000 0 6 0 222222 2 0 0 0 77 0 11111111 7 3 77777 33 777 7 7 3 4 7 7 11 3 1 3 7 7 0 00 0 000 0 888 0 00 6 0 0 0 0 8 0 0 0 2 00 00 0 00000 00 0 8888888888888888888888 22 3 333 222 7 3333 777 7 888888 7 555 88888888 5 7 0 66 0 00 0 8 00 0 66 4444444444444444 7 7 7 000000 88 2 88888 7 222 7 222222 7 7 000 7 33 7 4 7 000 6666666 3 44 000 7 99 1111 0 7 6 99 7 99 7 1 7 99 7 7 7 7 4 666666 3 666 333333333333 9999 4 0000000000000 7 0 888 00000 5 4 4 2 2 4 99 8888888888 9 1 4444 4 777777777777 8 44 11 666 0 0 0 55 0 0 5 0 8888 11 2222222222222222222222222 9 00
consensus : CTTGCTGTGT-GT-CGTGAGTGAG-TCTT-AAATCACCTTAG---ATAAAT-CATTT--T-CACATAAA---TA------AAACCGTTT-CAC--TG-TTGTTTTANGGTATTTGTTT--ATTATCTAAAGCTACCGTCAGGCCAGA--TAGTTTCCCTTTCGTGGGGTCCCAACAACAC---GTTGCA-TA-G--GGT--CTAAGATTTT--GATGAAATTTT-GCATGTGCTAAAAAGGATA-----TATATAACCTCAAAGATTATATATG-----A-------TAGAGAGTTACAAAAAAA----T-C-TTC---AGAATGTGTACA-AAT-A-CACTGG-ATTG-CGAT-A--ATGA--T-ACAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTAT-------------TCATC-TTT------TGAAGATTGTCGAT-TTATACGGCGCTTTCGA-TGA-CGTAACAATTGCACTGATGCT--A-TTT-ACGTCACT-T---TGCAATCGTCA-C-GTA-CGTACGTAACAA-TGCAGCCAA-ATGACGTNAACCAACGT-CAATAGGAA-TTTA--GGTGGG-AAAGCTT-TTTCT-TGTCCT--CCAGA-TTAT-TGTTT-TATTAGAGG-CT-AAAACATCAAAAACGATTTTGA-TTTTCAAAAGCTGCAGCTGT--ACGTNAAATT-ATT-ATC--AATAGT-ACA-------------------GATTTTTCTTGCATAACA--TTGTG-AAGTCA---TTTTTCG-AG-ATA---AATG---ATTA---A--CC-CTATTGCATAGGC----ATTTATTT-CC-TGAAACAGA-AAAGAGTT-ATCG-CCCTTGTGG-AATGTAGA-A-TTCNAACA------TTTAG---CTT-GCATTTCAT-ATTT-TTATTTTGGT---AT--AAAC-A-A-TC-ATTTTC--AATA-CAA-----GATATATTTTTATTT-GT-A-GT-TGAA-T-TC-AA---AA-------ATCTTTAAT-GGG---GT-C--GGATTTGGCACAAACTA----CAA-AATCA-A-A--AT-AG-CATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATNTTA--TTAAAATTT-------CG--TATAT----AAGCATTTCAC-CGCT---AT---TAT-CAG-TTTGACTGTG-AAGT---TTGC-AAAAGCGGGGCAT-ACAAGT-G-TTCAAANC--A--TTG-CATT----C-ATAG---A--N-A-T-CAAGTG-TG-ATTCATAGAGG-T-A-TG--AAC-GCAA-TTGATA-GA-TA-TGC--AGTC-AT-A--GC-A---TAG---AGGAACA-GTGGA-TATGCAAA
Reference ( gi|3 ) : CTTGCTGTGT-GT-CGTGAGTGAG-TCTTTAAATCACCTTAG---ATAAAA-CATTT--T-CACATAAA---TA------AAACCGTTT-CA---TG-TTGTTTTAGGGTATTTGTT---ATTATTTAAAGCTAC-GTCAGGCCAGG--TAGTTTCCCTTTCGTTGGGTCCCAACAACA----GTTGCA-TA-G--G-T--CTAAGATGTT--GATGAAATTTT-GCATGTGCTAAAAAGGATAATAATTATATAACCTCAAAGATTATATATG-----ATTAT--GTAGAGATATACGAAAAAA----T---TTC---AGAATG-GTACA-AAT-A-CACTGG-ATAG-CGAT-A--ATGA--T-GCAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTAT-------------TC-------------TGAAGATTGTCGAC-TTATACGGCGCTTTCGA-TGA-CGTAACAATTGCACTGATGCT--A-TTC-ACGTCACT-T---TGCAAACGTCA-T-GTA-CGTACGTAACAA-TGCAGCCAA-ATGACGTTAACCAACGT-CAATAGGAA-TTTA--GGTGGG-AAAGC---TTTCT-TGTCCT--CCAGA-TTA--TGTTT-TA-TAGAGG-CT-AAAACATC-AAAACG-TTTTGATTTTTCAAAAGCTGCAGCTGT--ACATTAAATT-GTC-ATC--AATAGT-ACA-------------------AGCTTTTCTTGCATAACA--TTGTG-AAGTCA---TTTTTTG-AG-ATA---AATG---ATTA---A--CC-CTATCGCATAGG-----A--TATTT-CC-TGAAACAGA-AAAGAGTT-ATCA-CCCTTGTGG-AATGTAG--A-TTCCAACA------TTTAG---C-T-GCATTTCAT-ATTT-TTATTTT--T---AT--AAGC-A-A-TC-ATTTTC--AATA-CAA-----AATATATTTTTATTT-GT-T-GT-TGAA-T-TC-AA---AA-------ATTTTTAAT-CGG---GT-C--GGATTTGGCACAAACTA----CAA-AATC--A-A--AT-AGCCATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCTT---TTAAAATTC-------CGT-TATAT----AAGCATTTCAC-CGCT---AG---TAA-AAG-TTTGACTGTG-AAGT---TTGC-TAGGGCGGGGCAT-AGAAAT-G-CTCGAAGT--A--TTG-CATT----C-ATAG---A--T-A-T-CAAGTG-CG-GTTCATCGCGG-T-A-TG--AAC-GCAA-TTAATA-GA-CA-TGC--AGT--AT-A--GC-A---TAG---AGATACA-GTGGA-TATGCAAA
gi|5 : CTTGCTGTGT-GT-CGTTC-TGAG-TCTT-AAATC------------------ATT------------------------AAACCATTT-CAC--TG-TTGTTTTGGG--ATTTGTTT--ATTATTTAAAGCTAC-GTTAGGCCAGG--TA-TTTCCCTTTCGTGGGGTCC-AACAACACTGAGTTGAA-TA-G--GGT--GTACGATTTT----TGAAATTTT-GCATGTGCTAAAAAGGATA-----TATACA---TCAA-GATTATATGTG-----A---------GAGTT---CAAAAAAA----T---TTC---AGAATGTGTACA-CAT-A-CACTGG-AT----GAT-T--ATGA--T-TACAAGTT-GTGAGTT-TG----ACTA-CTCA-TT--CATTATCCATCGTTTTTTTTC-------------TGAAGACTGTCGAT-ATATA-GGCGCTTTCGA-TGA-CG-AACAAT-GCATTGATGCT--A-TTTTACGTCACT-T---TGCAATCGTCA-T-GTA-CGTACGTAA-AA-TGCAGCCAA-ATGACGTAAACCAACGG-CAATAGGAA-TTTA--GGTGGG-AAAGCTTTTTTCT-TGTTCT--CCAGA-TTAT-TGTTTCTA-TAGAGG-CT-AAAACATCAAAAACGATTTTGA-TTTTCAAAAGATGCAGCTGT--ACATAAAATT-ATTAATC--AATAGT-ACA-------------------G---TTTCTTACATCACA--TTGTG-AAGTCA---TTTTTTG-AG-ATA---AATG---ATTA---A--CC-CTAT-GCATAGC-----ATTTATTT-CC-TGAAACAGA-AAGAGGTT-ATCG-CCCTTGTGGAAATGTAGA-A-TTCCAACA------TTTAG---CTT-GCATTTCATCATTT-TTATTTTGGT---AT--AA-C-A-A-TC-ATTTTC--AATA-CAA-----GATAT-TTTTTATTT-GT-A-GT-TAAA-T-TC--A---AA-------ATCTTTAAT--GA---GT-C--AGATTT-GCACAAACTA----CAA-ATTA--A-A--AT-AG-CATTTGATC-T--T-AAAAC-AT-TAAT--C--ATAAAAATATTA--TTAAAATT--------TGG-TATAT----AAGCATTTCAC-CG-T---AT---CTT-CAG-TTTGACTGTG-AAGT---TTGC-AAAAGCGGGTCAT-ACAAGT-G-CTC-AAATCAA--TTG-TATT----C-ATAA---A--A-ATT-CAAGTG-TG-ATTCATAG-AG-T-A-TG--AAC-GCAA-TAGATA-GA-TA-TAC--AGT--AT-A---C-A---AAGAGTAGA-ACA-GTGGA-TATGCAAA
gi|2 : agtCTTGCTGTGTTGT-CGTGAGTGAGGTCTT--AATCACCTT-G---ATAAAT-AATTT--TTCACA-AAA---TA------AA-CCGTTTTCAC--TGATTGTTTTATGGTATTTGTTT--ATTATTCAAAGCTACCGTCAGGCCAGAAATAGTTTCCCTT-CGTGGGGTTCCAACA-CA-----TT-CA-TA-GTTG-T---TAAGATTTT--GATGGAATTTT-GCATGTGCTAAAAA----AAGA--TATGTAACCTCAAAGATTATA-ATGCGATCATAAT--GTA-AGAGTTCCAAAAAAAATTTT---TTC---AGAATG-GTGTACAAT-AACACTGGGATTG-CGATTA--ATGA--TTACAAAGTTTGTGAGTT-TG----ACTATCTCA-TT--CATTAT-------------TC-------------TGAAGATTGACGAT-TAATACGGCGCTTTCGA-TGA-CGTCACAA-TGCACTGATGCTACA-TTT-ACGTCA-T-T---TGCAAACGTCA-TGGTA-CGGTCGTAACAA-TGCAGCCAACAT-AC-TTAACCAAC-T-CAATAGGAA-TTTAGGGGTGGG-AAAGCTT-TTTCT-TGTCC---ACAGATTTAT-TGTTT-TATTAGAGGCCT-AAAACATC-AAAACGATTTTGA-TTTTCAAAAGCTGCAGCTGTAAACGTGAATTT-ATT-ATC--AACAGTAACA-------------------GTTTTTTCTTGCATACCAATTTGTG-AAGTCAT--TTTTTTG-AG-CT----AATG---ATTG---A--CC-TTAATGCATAGGCATTTA--T-TTT-CC-TGTAACAG--AAAGAGTT-ATCGCCCCTTGTGG-AATATAGA-A-TTAAAACA------TTTAAGCTC-T-GCATTTCAT-ATTTCTTAATTT--TGG-ATA-AAACAA-A-TC-AATTTC--AATATCAA-----GATATATTTTTATTT-GG-T-AG-TGAACT-TC-AA---AA-------ATCTTTAAT-GGG---GT-C--GGATTTGGCACAAACTA----CAA-ATTCAAA-A--AT-AG-CATTTGATC-T--T-AAAAC-AT-TTATAAC--AT-AAAATCTTA--TTAACATTT-------CGTATATTT----AAGCATTTCG--CGCT---AT---TGT-TAGTTTTGA-TGTGAAAGT---ATGC-AAAAGCGGGGCAC-A-CAGT-G-TTCAATCA--A--TTG-CAGT----C-ACA----A--TAA-T-GCAGTG-TG-ATTCATAGAGGTT-ACTG--AAC-GCAA-TTGATA-GA-T--TGC--AATC-ATCA--GC-ATGTTAG----GA-ACA-ATGGA-TA-GCAAA
gi|1 : aaatgccaattgcttctgctggcatattctatgatgcgttagcggcatacatcaggaagctttgctggctattctatgatgcgcgtctagcgcatcataggaaatatgccagcagaggcaattgcatttcttaatgccatgttcacttgaaaacgtattcatttgttatagtttgcatttctgtttttccttttgtgcgaataaacatgatacatacactttggtcgtggcaatctaaattacttacagtaatccatcctagaataatattCTTG-TGTGT-GTTCGTGA-TGGA-TATG-AAATCACCTTAACTAATAAAGTCATTT--T-CAC-TAAAATATA------AAACCGTT--CAAACTG-TTGTTT-AAGGTAAT-GTTTTAATTATCTAA--CTACTATCAGGCCAA---TAGTTTTCCTT-CGT-GGGTTCCCATAACAC---ATTGCA-TA-T--G-TGCCTAAGA-GTTTGGATGGGATTTTTGCGTGTGCT-AAAAGGACA-----TGTAC-ACCTCAAAGA-TATATGTG--------------AGAGTTA-ACAGAATAA----TTCGTTC---AGATTT-GTACA-CATGA-CACTGG---AGTCGAT-AGTATGATTT-ACAAAG-T-GTGAGTTATGCACTATTATCTCA-TTACCATTAT-------------TC-------------TG-AGA-TG-CGATGTTA-ATCGCGCTTTCGAGTGATCGTAGCAA-TG-ACTGATGCT--A-T----------T-T---GGCAAACGTCGTT-GTATCGTACGT-ACAA-TGC-GCCAA-AGTAC-TTAA-CAACGT-CAATAGGAAGTTTA--GGTGGGAAAAGC---TTTGTCTGTCCTAACGAGA-TTA--TTGTT-TATTAGAGG-CT-AGGGC-CC-ATAGT--TTTTGA-TTTTCAAAAGCTG-AGCTGT--ATCGTGAATT-A---AAC--AACAGT-AAC-------------------AGTTTTTCTTGCATAACA---TGTGAAAGTCATCCTCTCTCGCAGCATATACACTC---ACTC---A--CCTTTATTG-ATAGGC----ATTTTTTT-CCATGAAACAGAGAAAGAGTTGATCG-CCTTTGTAG-AA-GTAG--A-ATTGAACACGATGCTTC-----T-T-ACATTTCAT-GTTT-TTATTTTGGT---AT--AAAC-ATATTC-ATTTTTTGAATG-CAAGGTATAATATCTTTTAA--T-GT-T-GTATATA-TCTCAAA---AA-------ATCTGTAATGCGGCTCGT-CCGGAATTTGGCACAAACTATCATCAATAGTTAAA-A--ATGAGTCATTTGATCGT--TGAAAAC-ATGTAATAACAGAT-AAAATCCTGTATTAACATTCATGCCCTCG--TATATTAAGGAGCATTTCACGTGCT---AAGCTT----AG-TTT--CTGTG-AAGTGGATTGC--AAAGC-GGGCAC-ACAAGT-G-TTCCA-----A--TCGTCACTAGGAC-CTAG---A--A-A-T-TCACTGTTGTGTTCATAGAGG-T-A-TGGTAACGGCAA-TTGATCTGG-TAGTGT--AGTC-ATGA--GC-A---TGG---AGGAACA-GTGG--TATt
gi|15 : ctatgaataaggaagaatggtaatagaatttttcacttcggaatgaacagttagggcgggtgtatgacaatgcaattgctctgctggcatggagcgcgttagcgcatcataggaataggccaagagagcaattgcatatgtcttaatgccatgtgtacaatgaaaacgttattacaccagctgttaaagatttccttttggttcgtttctccctattgtggctcggcatctgtatacattggtggcggaagcccaggaaacttagttacagctaattccatcgctagcatatCTTGCTGTGT-GT-CGTGAATGAG-TCTT--AATCACCTTAG---ATAAAT-CATTTTAT-CACATtgc
gi|4 : TTGCTGTGT-TT-CGTGAG--AA-T---TACATCACCTTAG---ATAAAT-CATTT--T-TACATAAA---TACATGTAAAACCGATT-TAC--TG-CTGTTTTATGATGTTTGTTT--ATTATCTAAAGCTAC-GTCAGGCCAGA--TAGTATCCTTTTTCTGAGGCCTTAA----A----G--GCA-TAGG--G-T--CT
gi|6 : acagctaattccataatagaactatTTGCAATA-G--GGT--CTAAGATTTT--GATGAAATTTT-GCATGTGCTAAA--GGATA-------TATAACCTCAAA-ATTATATAT---------------AGAGAGTTAC-AAAAAA----TCC-TTC---AGAATGTGTACA-AA--A-CACTGG-ATTG-CGAT-A--ATGA--T--CAAAGTT-GTGAGTT-TG----ACTATCTCAATC--CATTAT-------------TCATCTTTTTGTTTCTGAAGATTGCCGA---TA-ACGGCGCTTTCGA-TGA-CGTAACAATGCCATTGAT-CA--ATTTT-ACGT-ACTGT---TG-AATCGTCA-T-GTA-CGT-CTAAACAA-TGCAGCCAA-A-GACGTTAACCAACGTCCAATAGGAATTTTA--GGTGGG-AAAGCT--TTTCT-TGTTCT--CCAGA-TTA--TTGTT-TATTAGAGG-CTAAAAACATCAAAAACGATTTTGA--TTTCAAAAGTTGCAGCTGT--ACATAAAATTAATT-ATCAAAATAGT-ACA-------------------GA--TTTC-TACATAACA--TTGTGAAAGTAC---TTTTTCG-AG-ATA---AATG---A-TA---ATTCT-CTATTACATAGGC----ATTTATTTCCC-TGAAACAG--AAAGAGTT-ATCG-CCCTTGTGG-AATGCAGAAA-TTCCAACA------TTTAG---CTT-GCATTTC---ATTT-TTATTTTG-T---ATGAAAAC-G-A-TCAATTTTC--AATA-C-A-----GATATATTTTTATTT-GTAA-GT-T--A-TATC-AA---AACTTTAATATGTTTAGT-AGT---GT-C--TG-TCTATTAT-ATCTA----C-A-AATCA-A-A--AT-AG-CATT--ATC-T--T-AAAAC-TT-AAATAAC--AT--AAATATTA--TTAAAATTT-------GGT-TATAT----AAGCATTTCAC-CGCT---AT---TAT-TAG-TTTGACTGTGAAAGT---TTGC-AAATGCGGGGCAT-ACAAGT-GTTTCAAATC--A--ATG-CAAT----CAATAGAAAA--T-T-T-C-AGTG-TG-ATTCATAGAGG-TGA-TG--AAC-GCAT-TGAGTG-GA-TA-TAC--TGTC-AT-A--GC-A---TAG---AGGAACA-GCGGATTATGCAAAtcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaataggcattttatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|13 : TGAAATTTT-GCATGTGCTAAAAAGAA-------TATATAACTTCAAAAATTATATA---------------TAGAGAGTTACAAAAAt
gi|4 : -----ATTATAAGTAGAAAGTTAC---AAAA----T---TTCTTAAGAATGTGTATA-AAT-A-CACTAG-AT-G-AAAT-A--ATAAA-T-ACAAAGTT-GTGTGTT-TG----TCTATCTCA-TT--TATTCT-------------TCATCCTTT------TGTA---TCTCAA---TGTACGGTGTTTTCGA-TGA-CGAAACAAT-GCACTGATGCT--A-TTTTACATCACT------GCAATCGTCA-T-GTA-CGTACGTAACAA-TGCAGCCAG-ATGACGTTAACCAACGT-CAATATAAA-TTTA--GGCGGG-AAAGCTT-TTTCT-TGACCT--CCAGG-CAAATTGTTT-TA-TAGAGG-CT-AAAACATC-AAAATGATTTTGA-TTTCCAAAA---GCAACT-----CATT----------ATC--AATAGT-ACAGATTCTTCTTTTTTAAAAGAACTTTTCTTGCATAACA--TTGTG-AAGTCA---TTTTTT--AG-ATA---AATGATAATTATATA--CC-CTAT-AAATAGG--------CATTT-
gi|4 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatTTATATTGACGTT--GGTTA-ACGTCATC-TGGCTGCAT-TGTTA-C-GTA-CGTACATGACGATTGCAG------TGATGTAAAATAGCAT-CAGTtatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|5 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgc-TTT-ACGTCATT-TGGCTGCA--TTTTA-C-GTA-CGTACATGACGATTGCA---AA-GTGACGTAAAATAGCAT-CAATatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaataggcattttatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|7 : agtcttgctgtgtgtcgttctgagtcttaaatcattaaaccatttcactgttgttttgggatttgtttattatttaaagctacgttaggccaggtatttccctttcgtggggtccaacaacactgagttgaatagggtgtacgatttttgaaattttgcatgtgctaaaaaggatatatacatcaagattatatgtgagagttcaaaaaaatttcagaatgtgtacacatacactggatgattatgattacaagttgtgagtttgactactcattcattatccatcgttttttttctgaagactgtcgatatataggcgctttcgatgacgaacaatgcTTTTCTTTCATAATA--TTGTG-AAGTCA---TTCTC-G-AG-ATG---AATG---ATAA---A--CC-CTAT-GTATATG--------CATTT-CC-TGACACA-A-AAAGAGCT-ATCG-TCCGTGTGG-AATGTAG--AATGTTAATT------TCTAA---C-TTGCATTTCAT-ATTT-TCATTTCGGT---AT--AACC-A-T-TC-ATTTT---AATA-CAA-----GACATGTTTGCATTG-GT-A-GT-TGAA-T-TT-AA---AA-------ATCTTTAAT-TGG---GT-C--GGATTTGGCACAAACTA----CAG-AATCA-A-A--AT-AG-CATTTGATC-T--T-ACAAC-GC-T-----------------TT---TCAAAATGT-------CA--TATAT----AAGCATTTTCC-CGCT---AT---CAG-GAG-TTTGACTGTG-AAGT---TTTC-AAGAGCAGGGCAT-GGAAAT-G-CTCTAAGT--AT-TTG-CAAT----C-TTAG---T--T-ATT-CAAGTG-TG-GTTCATAGTTG-T-A-TG--AAC-GCAA-TTGATA-GA----------------------------GG---A---ACA-GTGGG-TATGCAAccaacggcaataggaatttaggtgggaaagcttttttcttgttctccagattattgtttctatagaggctaaaacatcaaaaacgattttgattttcaaaagatgcagctgtacataaaattattaatcaatagtacagtttcttacatcacattgtgaagtcattttttgagataaatgattaaccctatgcatagcatttatttcctgaaacagaaagaggttatcgcccttgtggaaatgtagaattccaacatttagcttgcatttcatcatttttattttggtataacaatcattttcaatacaagatattttttatttgtagttaaattcaaaatctttaatgagtcagatttgcacaaactacaaattaaaatagcatttgatcttaaaacattaatcataaaaatattattaaaatttggtatataagcatttcaccgtatcttcagtttgactgtgaagtttgcaaaagcgggtcatacaagtgctcaaatcaattgtattcataaaaattcaagtgtgattcatagagtatgaacgcaatagatagatatacagtatacaaagagtagaacagtggatatgcaaa
gi|4 : gact-GCATTTTAT-ATTT-TTATTTT--TGGTAT--AAAC-A-A-TC-ATTTTC--AATA-CAA-----GGTACATTTTTATTT-GA-A-GT-TGAA-T-TC-AA---AA-------GGCTTAAAT-GGG---AT-G--GAATTCGGCACAAACTA----CAA-AATCA-A-A--AT-AG-TATTTGATC-T--T-CAAAC-AT-TAATAAC--AA-AAAATCTTA--TCAAAATGT-------CG--TATAT----AAGCATTTCAC-CGCT---A----TAATCAG-ACTGACT
gi|8 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaatagTTTTTATTTTGT-AAGT-TAGA-T-TC-AACAAAA-------ATCTTAAAT-GAG---GTTC--AGATTTGGCACAAACTA----C-A-AATC--ACAACAT-AG-CATTTGATC-TTAT-AAAACGAT-TAATAAC--AT--AAATATTA--TTAAATTT---------GG-TATATA---AAGCATTTCACGCACTATCAG---T-------TTTGACTGTG-AAG----TTGC-AAAAGT-GGACATCAG--TT-G-TTACAATC--AAGTTGACATT----C-ATAG---AATT-T-T-CAAGTG-TG-A-TCATAGAGG-T-A-TG--AAT-GC-A-TTGATA-GATTA-TGTAAAGTC-AT-AGCGC-A---TAG---AGGAACAGGTGG--TATGCAAAaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|4 : TGACTGTG-TAGT---TTGC-ATGAGCGGG-CAT-ACAAAT-G-TTCAAAGTG-A--TTG-CATT----C-ATAG---A--A-A-TACAAGTG-TG-GTTC------------T---AAC-GCAA-TTGATA-GA-GA-TGC--AGTC-AT-A--GC-A---TAG---AAGAACA-GATGA-TATG
gi|11 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaataggcattttatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagacGTG-AAGT---TTGCATAAG-CGGGGCAT-ACAAATTG-TTCAAAATCAA--TTG-CATT----C-ATGA---A--A-A-TGCAAGTG-TA-ATTCATAGAGC-T-A-TG--AAC-GCAA-TTGATA-
gi|10 : CAT-ACAAGT-A-TTCAAATC--AA-TTG-CATT----C-ATAG---A--A-A-TTCAAG----A-ATT-ATAGAGG-TTA-TG--AAC-GCAA-TTGATA-GA-TA-TGC--AGTC-AT-A--GCAA---TAG---AGGAATA-GTAGA-TATGCA
gi|14 : G-T-A-TG--AAC-GCAAATTGATA-GA-TA-TGC--AGTCCAT----GC-A---TAG---AGGAGCAGGCATA-TATGCAAA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AACAAATTGCTCTGCTGGCATATTTCCTATGATGCGCTAACGGCGTCATAGGAATATGCCAGAGAGCAATTTGCATTTCATAAACGCCATGATTCACTGAAAAACGTTATTCATTTCTATATGCA
Unaligned ( gi|12 ): TTATCAGTTAACTACATCATATCTGGCAAGGTCCCTTCCGGGTAGTCCGCACTATAAATTAAGTCCTAGTCAA
Unaligned ( gi|16 ): TTTCAAAAGCTTTATTTATTTTTTTAATTAAAATTCTTACACTTCAATGCA
Alignments
lowQualScore : 111 1111 22222222222 11 111 1 11 1 22222222 1 11111 5555555555555555555555 22222222 11 11 1111 222 1111 777777777777777777777 22222 2 2 11 11 1111 1111 1 4444444444444444444 1 1111111 111 111 111 111111 1 11111 11 111111 1 1 1 1111111 1111 1 1111111 1111 11111 222222222 1111
lowQualScore : 6 6 9 6 2 6 3 111 6 0000 66 88888888888 0 88 11 8 555 0 111 0 3 11 0 3 44 99999999 6 3 2 8 6 3 111 66666 4 7 3 4444444444444444444444 77 99999999 6 00 6 44 1111 6 444 6 6 4444 6 99 333333333333333333333 6 22222 1 6 6 3 7 99 0 2 2 99 4 22 6 6 3 6 55 6 1 6 6 6 99 6 6 66 99 666 44 7 6 6 7 3 3 88 2 0000 2 3 7 0000 99 6 6 4 4444444444444444444 77 1 5 0000000 000 0 5 000 1 000 77 5 88 3 0 111111 3 6 1 6 6 6 6 66 66666 6 6 55 77 5 0 33 5 666 5 77 5 222222 5 0 0 0 2 5 0 5 888 6666666 99 888 5 66 0000 3 777 777 5 5 0 5 66 5 5 5 0 0 66 55 0 2 66 3 6666666 5 5 66 5555 77 1 0 8 8 777 2 0 4 4 1 99999 4 0 8888 4 222222222 55 0 3 7 3 55 3 3 3 3 4 4 55 66 1111 4 55 55 8 66
lowQualScore : . . . . . . . ... . .... .. ........... . .. .. . ... . ... . . .. . . .. ........ . . . . . . ... ..... . . . ...................... .. ........ . .. . .. .... . ... . . .... . .. ..................... . ..... . . . . . .. . . . .. . .. . . . . .. . . . . . .. . . .. .. ... .. . . . . . . .. . .... . . . .... .. . . . ................... .. . . ....... ... . . ... . ... .. . .. . . ...... . . . . . . . .. ..... . . .. .. . . .. . ... . .. . ...... . . . . . . . . ... ....... .. ... . .. .... . ... ... . . . . .. . . . . . .. .. . . .. . ....... . . .. .... .. . . . . ... . . . . . ..... . . .... . ......... .. . . . . .. . . . . . . .. .. .... . .. .. . ..
lowQualScore : 7 7 3 7 5 7 2 777 7 8888 33 66666666666 8 88 00 0 444 8 888 8 2 00 6 2 00 88888888 7 3 5 0 7 2 777 77777 2 3 0 6666666666666666666666 11 88888888 7 22 7 22 2222 7 222 7 7 2222 7 22 555555555555555555555 0 55555 0 7 7 5 7 22 0 5 5 88 0 77 7 7 5 7 77 7 0 7 7 7 22 7 7 33 22 888 00 3 7 7 3 2 5 33 5 8888 2 3 5 0000 22 7 7 2 3333333333333333333 99 4 7 0000000 000 1 7 000 7 000 99 7 99 0 7 999999 3 7 7 7 7 7 7 22 77777 7 7 99 99 7 7 66 7 111 7 99 7 666666 0 0 0 1 2 0 0 0 888 2222222 55 888 0 99 6666 2 222 111 0 0 0 0 99 0 0 0 4 1 99 11 1 8 99 2 2222222 0 0 99 6666 55 0 9 9 9 888 9 1 0 0 0 55555 0 1 5555 0 111111111 55 4 6 3 6 00 6 6 6 6 0 0 55 55 8888 0 55 55 0 33
consensus : CTTGCTGTGT-GT-CGTGAGTGAG-TCTT-AAATCACCTTAG---ATAAA-TCATTT--T-CACATAAA---TA------AAACCGTTT-CA--CTG-TTGTTTTANGGTATTTGTTT--ATTATTTAAAGCTACCGTCAGGCCAGA--TAGTTTCCCTTTCGTGGGGTCCCAACAACAC---GTTGCA-TAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATA-----TATATAACCTCAAAGATTATATATG-----AT-----AG----AGAGTTA-CAAAAAAA---TC--TTCAGAATG-TGTACAAAT-ACACTGG-ATTGCGAT-A--ATGA-TT-ACAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTCATC-------TTTT-------GAAGATTGTCGAT-TTATACGGCGCTTTCGA-TGA-CGTAACAAT-GCACTGATGCTA--TTTTACGTCACT-TTGCAANCGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTTTTCTTGTCCT--CCAGA-T-TATTGTTT-TATTAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGCTGCAGCTGT--A-CGTGAAATTA-TT-ATCAA--TAGT-A-CAG-TTTTT-------------------CTTGCATAACA--TTGTGAA-GTCA-TTTT---TCG-AG---ATAAA-TG---ATTA---A--CCCT-ATTGCATAGGCATT---TA-TTTCC-TGAAACAGA-AAAGAGTT-ATCG-CCCTTGTGG-AATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCAT-ATTTTT--ATTTT-GGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGATATA-----TTTTTAT-TT-GTA-GTTGAA-T-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--TATTAAAATT-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATTATCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGGCATACAAGT-G-TTCAAANC--A--TTG-CATT----C-ATAGA--AA---T-CA--AGTGTGATTCATAGAGG-T-A-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GC-ATAG--AG--GAACA-GTGGA-TATGCAAA
Reference ( family-3249 ) : CTTGCTGTGT-GT-CGTGAGTGAG-TCTT-AAATCACCTTAG---ATAAA-TCATTT--T-CACATAAA---TA------AAACCGTTT-CA--CTG-TTGTTTTANGGTATTTGTTT--ATTATCTAAAGCTACCGTCAGGCCAGA--TAGTTTCCCTTTCGTGGGGTCCCAACAACAC---GTTGCA-TAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATA-----TATATAACCTCAAAGATTATATATG-----AT-----AG----AGAGTTA-CAAAAAAA---TC--TTCAGAATG-TGTACAAAT-ACACTGG-ATTGCGAT-A--ATGA-T--ACAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTCATC-------TTTT-------GAAGATTGTCGAT-TTATACGGCGCTTTCGA-TGA-CGTAACAATTGCACTGATGCTA--TTT-ACGTCACT-TTGCAATCGTCAC-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTNAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTTTTCTTGTCCT--CCAGA-T-TATTGTTT-TATTAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGCTGCAGCTGT--A-CGTNAAATTA-TT-ATCAA--TAGT-A-CAGATTTTT-------------------CTTGCATAACA--TTGTGAA-GTCA-TTTT---TCG-AG---ATAAA-TG---ATTA---A--CCCT-ATTGCATAGGCATT---TA-TTTCC-TGAAACAGA-AAAGAGTT-ATCG-CCCTTGTGG-AATGTAGAA-TTCNAACAT-----TT-AGCT-TGCATTTCAT-ATTTTT--ATTTT-GGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGATATA-----TTTTTAT-TT-GTA-GTTGAA-T-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATNT--TATTAAAATT-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATTATCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGGCATACAAGT-G-TTCAAANC--A--TTG-CATT----C-ATAGA--NA---T-CA--AGTGTGATTCATAGAGG-T-A-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GC-ATAG--AG--GAACA-GTGGA-TATGCAAA
gi|1 : CTTG-TGTGT-GTTCGTGA-TGGA-TATG-AAATCACCTTAACTAATAAAGTCATTT--T-CAC-TAAAATATA------AAACCGTT--CAAACTG-TTGTTT-AAGGTAAT-GTTTTAATTATCTAA--CTACTATCAGGCCA-A--TAGTTTTCCTT-CGTGGGTTCCCA-TAACAC---ATTGCA-TATGTGCCTAAGAGTTTGGATGGGATTTTTGCGTGTGCTAAAA-GGACA-----TGTACA-CCTCAAAGAT-ATATGTG-----A-------------GAGTTAACAGAATAA---TTCGTTCAGA-TT-TGTACACATGACACTGG-AGT-CGAT-AGTATGA-TTTACAAAGT--GTGAGTTATGCACTATTATCTCA-TTACCATTATTC-------------T-------GA-GAT-G-CGATGTTA-ATCGCGCTTTCGAGTGATCGTAGCAAT-G-ACTGATGCTA--TTT-G----------GCAAACGTCGTTG-TATCGTACGTA-CAATGC-GCCAA-AGTAC-TTAAC-AACGTC-AATAGGAAGTTT-A--GGTGGGAAAAGC-TTTGTCT-GTCCTAACGAGA-T-TATTGTTT--ATTAGAGG-CTAGGG-C-CCATA---GTTTTTGATTTT-CAAAAGCTG-AGCTGT--ATCGTGAA-TTA----AACAA--CAGT-AACAG-TTTTT-------------------CTTGCATAACA--T-GTGAAAGTCA-TCCTCTCTCGCAGCATATACACTC---ACTC---A--CCTTTATTG-ATAGGCATT---TT-TTTCCATGAAACAGAGAAAGAGTTGATCG-CCTTTGTAG-AA-GTAGAA-TT-GAACACGATGCTT---CT-TACATTTCAT-GTTTTT--ATTTT-GGTAT--AAAC-ATATTCA-TTTTTTGAATG-CAAGGTATAATATCTTTTAATGTT-GTA---TATA-TCTCAAA---AA-------ATCTGTAATGCGGCTCGT-CCGGAATTTGGCACAAACTATCATCAATAGTTA-A-AA-ATGAGTCATTTGATCGT--TGAAAAC-ATGTAATAACAGAT-AAAATCCTGTATTAACATTCATGCCCTCG-T-ATA--TTAAGGAGCATTTCACGTGCTAAGCTTAG-TTT--CTGTG-AAGTGGATTGC-AAAGC-GGGCACACAAGT-G-TTCCAATC--G--T---CACTAGGAC-CTAGA--AAT--T-CACTGTTGTG-TTCATAGAGG-T-A-TGGTAACGGCAA-TTGA-TCTGG-TAGTGT--AGT-CATGA--GC-ATGG--AG--GAACA-GTGG--TAT
gi|10 : ctatgaataaggaagaatggtaatagaatttttcacttcggaatgaacagttagggcgggtgtatgacaatgcaattgctctgctggcatggagcgcgttagcgcatcataggaataggccaagagagcaattgcatatgtcttaatgccatgtgtacaatgaaaacgttattacaccagctgttaaagatttccttttggttcgtttctccctattgtggctcggcatctgtatacattggtggcggaagcccaggaaacttagttacagctaattccatcgctagcatatCATACAAGT-A-TTCAAATC--AA-TTG-CATT----C-ATAGA--AA---TTCA--AG---AATT-ATAGAGG-TTA-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GCAATAG--AG--GAATA-GTAGA-TATGCAtgc
gi|11 : GTG-AAGT---TTGCATAAGCGGGGCATACAAATTG-TTCAAAATCAA--TTG-CATT----C-ATGAA--AA---TGCA--AGTGTAATTCATAGAGC-T-A-TG--AAC-GCAA-TTGA-TA-
gi|13 : TGAAATTTT-GCATGTGCTAAAAAGA--A-----TATATAACTTCAAAAATTATAT--------AT-----AG----AGAGTTA-CAAAAA
gi|14 : G-T-A-TG--AAC-GCAAATTGA-TA-GA-TA-TGC--AGTCCAT----GC-ATAG--AG--GAGCAGGCATA-TATGCAAA
gi|15 : aCTTGCTGTGT-GT-CGTGAATGAG-TCTT--AATCACCTTAG---ATAAA-TCATTTTAT-CACATt
gi|2 : CTTGCTGTGTTGT-CGTGAGTGAGGTCTT-AA-TCACCTT-G---ATAAA-TAATTT--TTCACA-AAA---TA------AA-CCGTTTTCA--CTGATTGTTTTATGGTATTTGTTT--ATTATTCAAAGCTACCGTCAGGCCAGAAATAGTTTCCCTT-CGTGGGGTTCCAACA---C---ATT-CA-TAGTTGT-TAAGATTTTG-ATGGAATTTT-GCATGTGCTAAAAAA-AGA-----TATGTAACCTCAAAGATTATA-ATGCGATCAT-----AATGTAAGAGTTC-CAAAAAAAATTTT--TTCAGAATGGTGTACAATA-ACACTGGGATTGCGATTA--ATGA-TT-ACAAAGTTTGTGAGTT-TG----ACTATCTCA-TT--CATTATTC-------------T-------GAAGATTGACGAT-TAATACGGCGCTTTCGA-TGA-CGTCACAAT-GCACTGATGCTACATTT-ACGTCA-T-TTGCAAACGTCAT-GGTA-CGGTCGTAACAATGCAGCCAACAT-AC-TTAACCAAC-TC-AATAGGAA-TTT-AGGGGTGGGAAA-GC-TTTTTCTTGTCC---ACAGATT-TATTGTTT-TATTAGAGGCCTAAAA-CATC-AAAACGATTTTGATTTT-CAAAAGCTGCAGCTGTAAA-CGTGAATTTA-TT-ATCAA--CAGTAA-CAGTTTTTT-------------------CTTGCATACCAATTTGTGAA-GTCATTTTT---TTG-AG---CT-AA-TG---ATTG---A--CCTT-AATGCATAGGCATT---TATTTTCC-TGTAACAG--AAAGAGTT-ATCGCCCCTTGTGG-AATATAGAA-TTAAAACAT-----TTAAGCTCTGCATTTCAT-ATTTCTTAATTTT-GG-ATA-AAACAA-A-TCA-ATTTC--AATATCAAGATATA-----TTTTTAT-TTGGTA-G-TGAACT-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAT--TCAA-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TTATAAC--AT-AAAATCT--TATTAACATT-------TCG-T-ATATTT----AAGCATTTCG--CGCTATTGTTAGTTTTGA-TGTGAAAGT---ATGCAAAAGCGGGGCACAC-AGT-G-TTCAATCA--A--TTG-CAGT----C-ACAAT--AA---T-GC--AGTGTGATTCATAGAGGTT-ACTG--AAC-GCAA-TTGA-TA-GA-T--TGC--AAT-CATCA--GC-AT-GTTAG--GAACA-ATGGA-TA-GCAAA
gi|3 : aaatgccaattgcttctgctggcatattctatgatgcgttagcggcatacatcaggaagctttgctggctattctatgatgcgcgtctagcgcatcataggaaatatgccagcagaggcaattgcatttcttaatgccatgttcacttgaaaacgtattcatttgttatagtttgcatttctgtttttccttttgtgcgaataaacatgatacatacactttggtcgtggcaatctaaattacttacagtaatccatcctagaataatattCTTGCTGTGT-GT-CGTGAGTGAG-TCTTTAAATCACCTTAG---ATAAA-ACATTT--T-CACATAAA---TA------AAACCGTTT-CA---TG-TTGTTTTAGGGTATTTGTT---ATTATTTAAAGCTAC-GTCAGGCCAGG--TAGTTTCCCTTTCGTTGGGTCCCAACAACA----GTTGCA-TAGG--TCTAAGATGTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATAATAATTATATAACCTCAAAGATTATATATG-----ATTATGTAG----AGATATA-CGAAAAAA---T---TTCAGAATG--GTACAAAT-ACACTGG-ATAGCGAT-A--ATGA-T--GCAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTC-------------T-------GAAGATTGTCGAC-TTATACGGCGCTTTCGA-TGA-CGTAACAATTGCACTGATGCTA--TTC-ACGTCACT-TTGCAAACGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTT--CTTGTCCT--CCAGA-T-TAT-GTTT-TAT-AGAGG-CTAAAA-CATCAAAA-CG-TTTTGATTTTTCAAAAGCTGCAGCTGT--A-CATTAAATTG-TC-ATCAA--TAGT-A-CAAGCTTTT-------------------CTTGCATAACA--TTGTGAA-GTCA-TTTT---TTG-AG---ATAAA-TG---ATTA---A--CCCT-ATCGCATAGG-AT-----A-TTTCC-TGAAACAGA-AAAGAGTT-ATCA-CCCTTGTGG-AATGTAGA--TTCCAACAT-----TT-AGCT--GCATTTCAT-ATTTTT--ATTTT---TAT--AAGC-A-A-TCA-TTTTC--AATA-CAAAATATA-----TTTTTAT-TT-GTT-GTTGAA-T-TC-AA---AA-------ATTTTTAATC-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC---AA-AT-AGCCATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--T-TTAAAATT-------CCGTT-ATA--T----AAGCATTTCAC-CGCTAGTAAAAG-TTTGACTGTG-AAGT---TTGCTAGGGCGGGGCATAGAAAT-G-CTCGAAGT--A--TTG-CATT----C-ATAGA--TA---T-CA--AGTGCGGTTCATCGCGG-T-A-TG--AAC-GCAA-TTAA-TA-GA-CA-TGC--AGT--AT-A--GC-ATAG--AG--ATACA-GTGGA-TATGCAAAt
gi|4 : TTGCTGTGT-TT-CGTGAG--AA-T--T-ACATCACCTTAG---ATAAA-TCATTT--T-TACATAAA---TACATGTAAAACCGATT-TA--CTG-CTGTTTTATGATGTTTGTTT--ATTATCTAAAGCTA-CGTCAGGCCAGA--TAGTATCCTTTTTCTGAGGCCTTAA-AG---------GCA-TAGG-GTCT
gi|4 : acagctaattccataatagaactatCAAATATTATA---A-----GT-----AG----AAAGTTA-CAAAATT----TC--TTAAGAATG-TGTATAAAT-ACACTAG-AT-GAAAT-A--ATAAAT--ACAAAGTT-GTGTGTT-TG----TCTATCTCA-TT--TATTCTTCATCC------TTTT-------GTA---TCTCAAT---GTACGGTGTTTTCGA-TGA-CGAAACAAT-GCACTGATGCTA--TTTTACATCACT---GCAATCGTCAT-G-TA-CGTACGTAACAATGCAGCCAG-ATGACGTTAACCAACGTC-AATATAAA-TTT-A--GGCGGGAAA-GC-TTTTTCTTGACCT--CCAGG-CAAATTGTTT-TA-TAGAGG-CTAAAA-CATC-AAAATGATTTTGATTTC-CAAAAGC-----------------AACTCA-TT-ATCAA--TAGT-A-CAGATTCTTCTTTTTTAAAAGAACTTTTCTTGCATAACA--TTGTGAA-GTCA-TTTT---TT--AG---ATAAA-TGATAATTATATA--CCCT-A-TAAATAGGCATTTTATA-TTTtcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaataggcattttatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|4 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtaGCATTTTAT-ATTTTT--ATTTTTGGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGGTACA-----TTTTTAT-TT-GAA-GTTGAA-T-TC-AA---AA-------GGCTTAAATG-GG---AT-G--GAATTCGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-TATTTGATC-T--T-CAAAC-AT-TAATAAC--AA-AAAATCT--TATCAAAATG-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATAATCAG-ACTGACTttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|4 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaatagATCAG-ACTGACTGTG-TAGT---TTGCATGAGCGGG-CATACAAAT-G-TTCAAAGTG-A--TTG-CATT----C-ATAGA--AA---TACA--AGTGTGGTTC-T--------------AAC-GCAA-TTGA-TA-GA-GA-TGC--AGT-CAT-A--GC-ATAG--AA--GAACA-GATGA-TATGaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|5 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaataggcattttatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaCTTGCTGTGT-GT-CGTTC-TGAG-TCTT-AAATC------------------ATT------------------------AAACCATTT-CA--CTG-TTGTTTT--GGGATTTGTTT--ATTATTTAAAGCTAC-GTTAGGCCAGG--TA-TTTCCCTTTCGTGGGGTCC-AACAACACTGAGTTGAA-TAGG-GTGTACGATTTT---TGAAATTTT-GCATGTGCTAAAAAGGATA-----TATACA---TCAA-GATTATATGTG-----A-------------GAGTT--CAAAAAAA---T---TTCAGAATG-TGTACACAT-ACACTGG-AT---GAT-T--ATGA-TT-ACAA-GTT-GTGAGTT-TG----ACTA-CTCA-TT--CATTATCCATCGTTTTTTTTCT-------GAAGACTGTCGAT-ATATA-GGCGCTTTCGA-TGA-CG-AACAAT-GCATTGATGCTA--TTTTACGTCACT-TTGCAATCGTCAT-G-TA-CGTACGTAA-AATGCAGCCAA-ATGACGTAAACCAACGGC-AATAGGAA-TTT-A--GGTGGGAAA-GCTTTTTTCTTGTTCT--CCAGA-T-TATTGTTTCTA-TAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGATGCAGCTGT--A-CATAAAATTA-TTAATCAA--TAGT-A-CAG---TTT-------------------CTTACATCACA--TTGTGAA-GTCA-TTTT---TTG-AG---ATAAA-TG---ATTA---A--CCCT-A-TGCATA-GCATT---TA-TTTCC-TGAAACAGA-AAGAGGTT-ATCG-CCCTTGTGGAAATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCATCATTTTT--ATTTT-GGTAT---AAC-A-A-TCA-TTTTC--AATA-CAAGATAT------TTTTTAT-TT-GTA-GTTAAA-T-TC--A---AA-------ATCTTTAAT--GA---GT-C--AGATTT-GCACAAACTA----C-AAA--TT-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAAT--C--ATAAAAATAT--TATTAAAATT-------TGG-T-ATA--T----AAGCATTTCAC-CG-TATCTTCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGTCATACAAGT-G-CTCAAATCA-A--TTG-TATT----C-ATAAA--AAT--T-CA--AGTGTGATTCATAGA-G-T-A-TG--AAC-GCAA-TAGA-TA-GA-TA-TAC--AGT--AT-A---C-AAAG--AGTAGAACA-GTGGA-TATGCAAA
gi|6 : agtTTGCAATAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAA--GGATA-----TATA--ACCTCAAA-ATTATATAT-------------AG----AGAGTTA-CAAAAAAT---CC--TTCAGAATG-TGTACAAA--ACACTGG-ATTGCGAT-A--ATGA-T---CAAAGTT-GTGAGTT-TG----ACTATCTCAATC--CATTATTCATC-------TTTTTGTTTCTGAAGATTGCCGAT---A-ACGGCGCTTTCGA-TGA-CGTAACAATGCCATTGAT-CAA--TTTTACGT-ACTGTTG-AATCGTCAT-G-TA-CGT-CTAAACAATGCAGCCAA-A-GACGTTAACCAACGTCCAATAGGAA-TTTTA--GGTGGGAAA-GC-TTTT-CTTGTTCT--CCAGA-T-TATTGTTT--ATTAGAGG-CTAAAAACATCAAAAACGATTTTGATTT--CAAAAGTTGCAGCTGT--A-CATAAAATTAATT-ATCAAAATAGT-A-CAGATTTCT----------------------ACATAACA--TTGTGAAAGTAC-TTTT---TCG-AG---ATAAA-TG---AT-A---ATTCTCT-ATTACATAGGCATT---TA-TTTCCCTGAAACAGA-AA-GAGTT-ATCG-CCCTTGTGG-AATGCAGAAATTCCAACAT-----TT-AGCT-TGCATTTCAT---TTTT--ATTTT-G-TATGAAAAC-G-A-TCAATTTTC--AATA-CA-GATATA-----TTTTTAT-TT-GTAAGTT--A-TATC-AA---AACTTTAATATGTTTAGTA-GT---GT-C--TG-TCTATTATAT-CTA----CAAA---TC-A-AA-AT-AG-CATT--ATC-T--T-AAAAC-TT-AAATAAC--AT-AAA-TAT--TATTAAAATT-------TGG-TTATA--T----AAGCATTTCAC-CGCTATTATTAG-TTTGACTGTGAAAGT---TTGCAAATGCGGGGCATACAAGT-GTTTCAAATC--A--ATG-CAAT----CAATAGA--AAATTT-C---AGTGTGATTCATAGAGG-TGA-TG--AAC-GC-A-TTGAGTG-GA-TA-TAC--TGT-CAT-A--GC-ATAG--AG--GAACA-GCGGATTATGCAAA
gi|7 : TTTTT-------------------CTTTCATAATA--TTGTGAA-GTCA-TTCT----CG-AG---ATGAA-TG---ATAA---A--CCCT-AT-GTATATGCATT---T-----CC-TGACACA-A-AAAGAGCT-ATCG-TCCGTGTGG-AATGTAGAA-TGTTAATTT-----CT-AACT-TGCATTTCAT-ATTTTC--ATTTC-GGTAT--AACC-A-T-TCA-TTTT---AATA-CAAGACATG-----TTTGCAT-TG-GTA-GTTGAA-T-TT-AA---AA-------ATCTTTAATT-GG---GT-C--GGATTTGGCACAAACTA----CAGAA--TC-A-AA-AT-AG-CATTTGATC-T--T-ACAAC-GC-T-----------------T--T-TCAAAATG-------TCA-T-ATA--T----AAGCATTTTCC-CGCTATCAGGAG-TTTGACTGTG-AAGT---TTTCAAGAGCAGGGCATGGAAAT-G-CTCTAAGT--AT-TTG-CAAT----C-TTAGT--TAT--T-CA--AGTGTGGTTCATAGTTG-T-A-TG--AAC-GCAA-TTG------------------------------ATAG--AG--GAACA-GTGGG-TATGCAAt
gi|8 : gac-----TTTTTAT-TTTGTAAGTTAGA-T-TC-AACAAAA-------ATCTTAAATG-AG---GTTC--AGATTTGGCACAAACTA----C-AAA--TC-ACAACAT-AG-CATTTGATC-TTAT-AAAACGAT-TAATAAC--AT--AAATAT--TATT-AAATT-------TGG-T-ATA--TA---AAGCATTTCA--CGC-ACTATCAGTTTTGACTGTG-AAG----TTGCAAAAGT-GGACAT-CAGTT-G-TTACAATC--AAGTTGACATT----C-ATAGAATTT---T-CA--AGTGTGA-TCATAGAGG-T-A-TG--AAT-GC-A-TTGA-TA-GATTA-TGTAAAGT-CAT-AGCGC-ATAG--AG--GAACAGGTGG--TATGCAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACAAATTGCTCTGCTGGCATATTTCCTATGATGCGCTAACGGCGTCATAGGAATATGCCAGAGAGCAATTTGCATTTCATAAACGCCATGATTCACTGAAAAACGTTATTCATTTCTATATGCA
Unaligned ( gi|12 ): TTATCAGTTAACTACATCATATCTGGCAAGGTCCCTTCCGGGTAGTCCGCACTATAAATTAAGTCCTAGTCAA
Unaligned ( gi|16 ): TTTCAAAAGCTTTATTTATTTTTTTAATTAAAATTCTTACACTTCAATGCA
Alignments
lowQualScore : 111 1111 22222222222 11 111 1 11 1 22222222 1 11111 5555555555555555555555 22222222 11 11 1111 11 1111 777777777777777777777 22222 11 1111 1111 44444444444444444444444 1 1111111 111 111 111 111111 1 11111 11 111111 1 1 1 1111111 1111 1 1111111 1111 11111 11111111 1111
lowQualScore : 6 6 9 6 2 6 3 111 6 0000 66 88888888888 0 88 11 8 555 0 111 0 3 11 0 3 44 99999999 6 3 2 8 6 3 111 66666 4 7 3 4444444444444444444444 77 99999999 6 00 6 44 1111 44 6 6 4444 6 99 333333333333333333333 6 22222 1 6 6 3 6 6 6 7 2 2 99 1 6 6 6 3 6 55 6 6 6 6 99 6 6 66 99 666 44 7 6 6 7 3 3 88 2 0000 2 3 7 0000 99 6 6 6 55555555555555555555555 77 1 5 0000000 000 0 5 000 1 000 77 5 88 3 0 111111 3 6 1 6 6 6 6 66 66666 6 6 55 77 5 0 33 5 666 5 77 5 222222 5 0 0 0 2 5 0 5 888 6666666 99 888 5 66 0000 3 777 777 5 5 0 5 66 5 5 5 0 66 55 0 66 0 6666666 5 5 66 5555 77 1 0 8 8 777 2 0 4 4 1 99999 4 0 8888 4 4 99999999 55 0 3 7 3 55 3 3 3 3 4 4 55 66 1111 4 55 55 8 66
lowQualScore : . . . . . . . ... . .... .. ........... . .. .. . ... . ... . . .. . . .. ........ . . . . . . ... ..... . . . ...................... .. ........ . .. . .. .... .. . . .... . .. ..................... . ..... . . . . . . . . . . .. . . . . . . .. . . . . .. . . .. .. ... .. . . . . . . .. . .... . . . .... .. . . . ....................... .. . . ....... ... . . ... . ... .. . .. . . ...... . . . . . . . .. ..... . . .. .. . . .. . ... . .. . ...... . . . . . . . . ... ....... .. ... . .. .... . ... ... . . . . .. . . . . .. .. . .. . ....... . . .. .... .. . . . . ... . . . . . ..... . . .... . . ........ .. . . . . .. . . . . . . .. .. .... . .. .. . ..
lowQualScore : 7 7 3 7 5 7 2 777 7 8888 33 66666666666 8 88 00 0 444 8 888 8 2 00 6 2 00 88888888 7 3 5 0 7 2 777 77777 2 3 0 6666666666666666666666 11 88888888 7 22 7 22 2222 00 7 7 2222 7 22 555555555555555555555 0 55555 0 7 7 5 7 7 7 3 5 5 88 0 7 7 7 5 7 77 7 7 7 7 22 7 7 33 22 888 00 3 7 7 3 2 5 33 5 8888 2 7 5 0000 22 7 7 7 00000000000000000000000 99 4 7 0000000 000 1 7 000 7 000 99 7 99 0 7 999999 3 7 7 7 7 7 7 22 77777 7 7 99 99 7 7 66 7 111 7 99 7 666666 0 0 0 1 2 0 0 0 888 2222222 55 888 0 99 6666 2 222 111 0 0 0 0 99 0 0 0 1 99 11 1 99 4 2222222 0 0 99 6666 55 0 9 9 9 888 9 1 0 0 0 55555 0 1 5555 0 0 77777777 55 4 6 3 6 00 6 6 6 6 0 0 55 55 8888 0 55 55 0 33
consensus : CTTGCTGTGT-GT-CGTGAGTGAG-TCTT-AAATCACCTTAG---ATAAA-TCATTT--T-CACATAAA---TA------AAACCGTTT-CA--CTG-TTGTTTTANGGTATTTGTTT--ATTATTTAAAGCTACCGTCAGGCCAGA--TAGTTTCCCTTTCGTGGGGTCCCAACAACAC---GTTGCA-TAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATA-----TATATAACCTCAAAGATTATATATG-----AT-----AG----AGAGTTA-CAAAAAAA---TC--TTCAGAATG-TGTACAAAT-ACACTGG-ATTGCGAT-A--ATGATT-ACAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTCATC-------TTTT-------GAAGATTGTCGAT-TTATACGGCGCTTTCGA-TGA-CGTAACAAT-GC-ACTGATGCTAT-TTTACGTCACT-TTGCAANCGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTTTTCTTGTCCT--CCAGA-T-TATTGTTT-TATTAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGCTGCAGCTGT--A-CGTGAAATTA-TT-ATCAA--TAGT-A-CA-G-------TTT-------------TTCTTGCATAACA--TTGTGAA-GTCA-TTTT---TCG-AG---ATAAA-TG---ATTA---A--CCCT-ATTGCATAGGCATT---TA-TTTCC-TGAAACAGA-AAAGAGTT-ATCG-CCCTTGTGG-AATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCAT-ATTTTT--ATTTT-GGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGATATA-----TTTTTAT-TT-GTA-GTTGAA-T-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--TATTAAAATT-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATTATCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGGCATACAAGT-G-TTCAAANC--A--TTG-CATT----C-ATAG-AA--A---T-CA--AGTGTGATTCATAGAGG-T-A-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GC-ATAG--AG--GAACA-GTGGA-TATGCAAA
Reference ( family-3249 ) : CTTGCTGTGT-GT-CGTGAGTGAG-TCTT-AAATCACCTTAG---ATAAA-TCATTT--T-CACATAAA---TA------AAACCGTTT-CA--CTG-TTGTTTTANGGTATTTGTTT--ATTATTTAAAGCTACCGTCAGGCCAGA--TAGTTTCCCTTTCGTGGGGTCCCAACAACAC---GTTGCA-TAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATA-----TATATAACCTCAAAGATTATATATG-----AT-----AG----AGAGTTA-CAAAAAAA---TC--TTCAGAATG-TGTACAAAT-ACACTGG-ATTGCGAT-A--ATGATT-ACAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTCATC-------TTTT-------GAAGATTGTCGAT-TTATACGGCGCTTTCGA-TGA-CGTAACAAT-GC-ACTGATGCTAT-TTTACGTCACT-TTGCAANCGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTTTTCTTGTCCT--CCAGA-T-TATTGTTT-TATTAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGCTGCAGCTGT--A-CGTGAAATTA-TT-ATCAA--TAGT-A-CA-G-------TTT-------------TTCTTGCATAACA--TTGTGAA-GTCA-TTTT---TCG-AG---ATAAA-TG---ATTA---A--CCCT-ATTGCATAGGCATT---TA-TTTCC-TGAAACAGA-AAAGAGTT-ATCG-CCCTTGTGG-AATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCAT-ATTTTT--ATTTT-GGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGATATA-----TTTTTAT-TT-GTA-GTTGAA-T-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--TATTAAAATT-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATTATCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGGCATACAAGT-G-TTCAAANC--A--TTG-CATT----C-ATAG-AA--A---T-CA--AGTGTGATTCATAGAGG-T-A-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GC-ATAG--AG--GAACA-GTGGA-TATGCAAA
gi|1 : CTTG-TGTGT-GTTCGTGA-TGGA-TATG-AAATCACCTTAACTAATAAAGTCATTT--T-CAC-TAAAATATA------AAACCGTT--CAAACTG-TTGTTT-AAGGTAAT-GTTTTAATTATCTAA--CTACTATCAGGCCA-A--TAGTTTTCCTT-CGTGGGTTCCCA-TAACAC---ATTGCA-TATGTGCCTAAGAGTTTGGATGGGATTTTTGCGTGTGCTAAAA-GGACA-----TGTACA-CCTCAAAGAT-ATATGTG-----A-------------GAGTTAACAGAATAA---TTCGTTCAGA-TT-TGTACACATGACACTGG-AGT-CGAT-AGTATGATTTACAAAGT--GTGAGTTATGCACTATTATCTCA-TTACCATTATTC-------------T-------GA-GAT-G-CGATGTTA-ATCGCGCTTTCGAGTGATCGTAGCAAT-G--ACTGATGCTAT-TT---G--------GCAAACGTCGTTG-TATCGTACGTA-CAATGC-GCCAA-AGTAC-TTAAC-AACGTC-AATAGGAAGTTT-A--GGTGGGAAAAGC-TTTGTCT-GTCCTAACGAGA-T-TATTGTTT--ATTAGAGG-CTAGGG-C-CCATA---GTTTTTGATTTT-CAAAAGCTG-AGCTGT--ATCGTGAA-TTA----AACAA--CAGT-AACA-G-------TTT-------------TTCTTGCATAACA--T-GTGAAAGTCA-TCCTCTCTCGCAGCATATACACTC---ACTC---A--CCTTTATTG-ATAGGCATT---TT-TTTCCATGAAACAGAGAAAGAGTTGATCG-CCTTTGTAG-AA-GTAGAA-TTG-AACACGATGCTT---CT-TACATTTCAT-GTTTTT--ATTTT-GGTAT--AAAC-ATATTCA-TTTTTTGAATG-CAAGGTATAATATCTTTTAATGTT-GTA---TATA-TCTCAAA---AA-------ATCTGTAATGCGGCTCGT-CCGGAATTTGGCACAAACTATCATCAATAGTTA-A-AA-ATGAGTCATTTGATCGT--TGAAAAC-ATGTAATAACAGAT-AAAATCCTGTATTAACATTCATGCCCTCG-T-ATA--TTAAGGAGCATTTCACGTGCTAAGCTTAG-TTT--CTGTG-AAGTGGATTGC-AAAGC-GGGCACACAAGT-G-TTCCAATC--G--T---CACTAGGAC-CTAG-AA--AT--T-CACTGTTGTG-TTCATAGAGG-T-A-TGGTAACGGCAA-TTGA-TCTGG-TAGTGT--AGT-CATGA--GC-ATGG--AG--GAACA-GTGG--TAT
gi|10 : ctatgaataaggaagaatggtaatagaatttttcacttcggaatgaacagttagggcgggtgtatgacaatgcaattgctctgctggcatggagcgcgttagcgcatcataggaataggccaagagagcaattgcatatgtcttaatgccatgtgtacaatgaaaacgttattacaccagctgttaaagatttccttttggttcgtttctccctattgtggctcggcatctgtatacattggtggcggaagcccaggaaacttagttacagctaattccatcgctagcatatCATACAAGT-A-TTCAAATC--AA-TTG-CATT----C-ATAG-AA--A---TTCA--AG---AATT-ATAGAGG-TTA-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GCAATAG--AG--GAATA-GTAGA-TATGCAtgc
gi|11 : GTG-AAGT---TTGCATAAGCGGGGCATACAAATTG-TTCAAAATCAA--TTG-CATT----C-ATGA-AA--A---TGCA--AGTGTAATTCATAGAGC-T-A-TG--AAC-GCAA-TTGA-TA-
gi|13 : TGAAATTTT-GCATGTGCTAAAAAGA--A-----TATATAACTTCAAAAATTATAT--------AT-----AG----AGAGTTA-CAAAAA
gi|14 : G-T-A-TG--AAC-GCAAATTGA-TA-GA-TA-TGC--AGTCCAT----GC-ATAG--AG--GAGCAGGCATA-TATGCAAA
gi|15 : aCTTGCTGTGT-GT-CGTGAATGAG-TCTT--AATCACCTTAG---ATAAA-TCATTTTAT-CACATt
gi|2 : CTTGCTGTGTTGT-CGTGAGTGAGGTCTT-AA-TCACCTT-G---ATAAA-TAATTT--TTCACA-AAA---TA------AA-CCGTTTTCA--CTGATTGTTTTATGGTATTTGTTT--ATTATTCAAAGCTACCGTCAGGCCAGAAATAGTTTCCCTT-CGTGGGGTTCCAACA---C---ATT-CA-TAGTTGT-TAAGATTTTG-ATGGAATTTT-GCATGTGCTAAAAAA-AGA-----TATGTAACCTCAAAGATTATA-ATGCGATCAT-----AATGTAAGAGTTC-CAAAAAAAATTTT--TTCAGAATGGTGTACAATA-ACACTGGGATTGCGATTA--ATGATT-ACAAAGTTTGTGAGTT-TG----ACTATCTCA-TT--CATTATTC-------------T-------GAAGATTGACGAT-TAATACGGCGCTTTCGA-TGA-CGTCACAAT-GC-ACTGATGCTACATTTACGTCA-T-TTGCAAACGTCAT-GGTA-CGGTCGTAACAATGCAGCCAACAT-AC-TTAACCAAC-TC-AATAGGAA-TTT-AGGGGTGGGAAA-GC-TTTTTCTTGTCC---ACAGATT-TATTGTTT-TATTAGAGGCCTAAAA-CATC-AAAACGATTTTGATTTT-CAAAAGCTGCAGCTGTAAA-CGTGAATTTA-TT-ATCAA--CAGTAA-CA-GT------TTT-------------TTCTTGCATACCAATTTGTGAA-GTCATTTTT---TTG-AG---CT-AA-TG---ATTG---A--CCTT-AATGCATAGGCATT---TATTTTCC-TGTAACAG--AAAGAGTT-ATCGCCCCTTGTGG-AATATAGAA-TTAAAACAT-----TTAAGCTCTGCATTTCAT-ATTTCTTAATTTT-GG-ATA-AAACAA-A-TCA-ATTTC--AATATCAAGATATA-----TTTTTAT-TTGGTA-G-TGAACT-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAT--TCAA-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TTATAAC--AT-AAAATCT--TATTAACATT-------TCG-T-ATATTT----AAGCATTTCG--CGCTATTGTTAGTTTTGA-TGTGAAAGT---ATGCAAAAGCGGGGCACAC-AGT-G-TTCAATCA--A--TTG-CAGT----C-ACAA-TA--A---T-GC--AGTGTGATTCATAGAGGTT-ACTG--AAC-GCAA-TTGA-TA-GA-T--TGC--AAT-CATCA--GC-AT-GTTAG--GAACA-ATGGA-TA-GCAAA
gi|3 : aaatgccaattgcttctgctggcatattctatgatgcgttagcggcatacatcaggaagctttgctggctattctatgatgcgcgtctagcgcatcataggaaatatgccagcagaggcaattgcatttcttaatgccatgttcacttgaaaacgtattcatttgttatagtttgcatttctgtttttccttttgtgcgaataaacatgatacatacactttggtcgtggcaatctaaattacttacagtaatccatcctagaataatattCTTGCTGTGT-GT-CGTGAGTGAG-TCTTTAAATCACCTTAG---ATAAA-ACATTT--T-CACATAAA---TA------AAACCGTTT-CA---TG-TTGTTTTAGGGTATTTGTT---ATTATTTAAAGCTAC-GTCAGGCCAGG--TAGTTTCCCTTTCGTTGGGTCCCAACAACA----GTTGCA-TAGG--TCTAAGATGTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATAATAATTATATAACCTCAAAGATTATATATG-----ATTATGTAG----AGATATA-CGAAAAAA---T---TTCAGAATG--GTACAAAT-ACACTGG-ATAGCGAT-A--ATGAT--GCAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTC-------------T-------GAAGATTGTCGAC-TTATACGGCGCTTTCGA-TGA-CGTAACAATTGC-ACTGATGCTAT-TC-ACGTCACT-TTGCAAACGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTT--CTTGTCCT--CCAGA-T-TAT-GTTT-TAT-AGAGG-CTAAAA-CATCAAAA-CG-TTTTGATTTTTCAAAAGCTGCAGCTGT--A-CATTAAATTG-TC-ATCAA--TAGT-A-CAAG-------CTT-------------TTCTTGCATAACA--TTGTGAA-GTCA-TTTT---TTG-AG---ATAAA-TG---ATTA---A--CCCT-ATCGCATAGG-AT-----A-TTTCC-TGAAACAGA-AAAGAGTT-ATCA-CCCTTGTGG-AATGTAGA--TTCCAACAT-----TT-AGCT--GCATTTCAT-ATTTTT--ATTTT---TAT--AAGC-A-A-TCA-TTTTC--AATA-CAAAATATA-----TTTTTAT-TT-GTT-GTTGAA-T-TC-AA---AA-------ATTTTTAATC-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC---AA-AT-AGCCATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--T-TTAAAATT-------CCGTT-ATA--T----AAGCATTTCAC-CGCTAGTAAAAG-TTTGACTGTG-AAGT---TTGCTAGGGCGGGGCATAGAAAT-G-CTCGAAGT--A--TTG-CATT----C-ATAG-AT--A---T-CA--AGTGCGGTTCATCGCGG-T-A-TG--AAC-GCAA-TTAA-TA-GA-CA-TGC--AGT--AT-A--GC-ATAG--AG--ATACA-GTGGA-TATGCAAAt
gi|4 : TTGCTGTGT-TT-CGTGAG--AA-T--T-ACATCACCTTAG---ATAAA-TCATTT--T-TACATAAA---TACATGTAAAACCGATT-TA--CTG-CTGTTTTATGATGTTTGTTT--ATTATCTAAAGCTA-CGTCAGGCCAGA--TAGTATCCTTTTTCTGAGGCCTTAA-AG---------GCA-TAGG-GTCT
gi|4 : acagctaattccataatagaactatCAAATATTATA---A-----GT-----AG----AAAGTTA-CAAAATT----TC--TTAAGAATG-TGTATAAAT-ACACTAG-AT-GAAAT-A--ATAAAT-ACAAAGTT-GTGTGTT-TG----TCTATCTCA-TT--TATTCTTCATCC------TTTT-------GTA---TCTCAAT---GTACGGTGTTTTCGA-TGA-CGAAACAAT-GC-ACTGATGCTAT-TTTACATCACT---GCAATCGTCAT-G-TA-CGTACGTAACAATGCAGCCAG-ATGACGTTAACCAACGTC-AATATAAA-TTT-A--GGCGGGAAA-GC-TTTTTCTTGACCT--CCAGG-CAAATTGTTT-TA-TAGAGG-CTAAAA-CATC-AAAATGATTTTGATTTC-CAAAAGC-----------------AACTCA-TT-ATCAA--TAGT-A-CA-GATTCTTCTTTTTTAAAAGAACTTTTCTTGCATAACA--TTGTGAA-GTCA-TTTT---TT--AG---ATAAA-TGATAATTATATA--CCCT-A-TAAATAGGCATTTTATA-TTTtcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaataggcattttatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|4 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtaGCATTTTAT-ATTTTT--ATTTTTGGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGGTACA-----TTTTTAT-TT-GAA-GTTGAA-T-TC-AA---AA-------GGCTTAAATG-GG---AT-G--GAATTCGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-TATTTGATC-T--T-CAAAC-AT-TAATAAC--AA-AAAATCT--TATCAAAATG-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATAATCAG-ACTGACTttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|4 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaatagATCAG-ACTGACTGTG-TAGT---TTGCATGAGCGGG-CATACAAAT-G-TTCAAAGTG-A--TTG-CATT----C-ATAG-AA--A---TACA--AGTGTGGTTC-T--------------AAC-GCAA-TTGA-TA-GA-GA-TGC--AGT-CAT-A--GC-ATAG--AA--GAACA-GATGA-TATGaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|5 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaataggcattttatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaCTTGCTGTGT-GT-CGTTC-TGAG-TCTT-AAATC------------------ATT------------------------AAACCATTT-CA--CTG-TTGTTTT--GGGATTTGTTT--ATTATTTAAAGCTAC-GTTAGGCCAGG--TA-TTTCCCTTTCGTGGGGTCC-AACAACACTGAGTTGAA-TAGG-GTGTACGATTTT---TGAAATTTT-GCATGTGCTAAAAAGGATA-----TATACA---TCAA-GATTATATGTG-----A-------------GAGTT--CAAAAAAA---T---TTCAGAATG-TGTACACAT-ACACTGG-AT---GAT-T--ATGATT-ACAA-GTT-GTGAGTT-TG----ACTA-CTCA-TT--CATTATCCATCGTTTTTTTTCT-------GAAGACTGTCGAT-ATATA-GGCGCTTTCGA-TGA-CG-AACAAT-GC-ATTGATGCTAT-TTTACGTCACT-TTGCAATCGTCAT-G-TA-CGTACGTAA-AATGCAGCCAA-ATGACGTAAACCAACGGC-AATAGGAA-TTT-A--GGTGGGAAA-GCTTTTTTCTTGTTCT--CCAGA-T-TATTGTTTCTA-TAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGATGCAGCTGT--A-CATAAAATTA-TTAATCAA--TAGT-A-CA-G---------T-------------TTCTTACATCACA--TTGTGAA-GTCA-TTTT---TTG-AG---ATAAA-TG---ATTA---A--CCCT-A-TGCATA-GCATT---TA-TTTCC-TGAAACAGA-AAGAGGTT-ATCG-CCCTTGTGGAAATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCATCATTTTT--ATTTT-GGTAT---AAC-A-A-TCA-TTTTC--AATA-CAAGATAT------TTTTTAT-TT-GTA-GTTAAA-T-TC--A---AA-------ATCTTTAAT--GA---GT-C--AGATTT-GCACAAACTA----C-AAA--TT-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAAT--C--ATAAAAATAT--TATTAAAATT-------TGG-T-ATA--T----AAGCATTTCAC-CG-TATCTTCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGTCATACAAGT-G-CTCAAATCA-A--TTG-TATT----C-ATAA-AA--AT--T-CA--AGTGTGATTCATAGA-G-T-A-TG--AAC-GCAA-TAGA-TA-GA-TA-TAC--AGT--AT-A---C-AAAG--AGTAGAACA-GTGGA-TATGCAAA
gi|6 : agtTTGCAATAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAA--GGATA-----TATA--ACCTCAAA-ATTATATAT-------------AG----AGAGTTA-CAAAAAAT---CC--TTCAGAATG-TGTACAAA--ACACTGG-ATTGCGAT-A--ATGAT---CAAAGTT-GTGAGTT-TG----ACTATCTCAATC--CATTATTCATC-------TTTTTGTTTCTGAAGATTGCCGAT---A-ACGGCGCTTTCGA-TGA-CGTAACAAT-GCCATTGAT-CAAT-TTTACGT-ACTGTTG-AATCGTCAT-G-TA-CGT-CTAAACAATGCAGCCAA-A-GACGTTAACCAACGTCCAATAGGAA-TTTTA--GGTGGGAAA-GC-TTTT-CTTGTTCT--CCAGA-T-TATTGTTT--ATTAGAGG-CTAAAAACATCAAAAACGATTTTGATTT--CAAAAGTTGCAGCTGT--A-CATAAAATTAATT-ATCAAAATAGT-A-CA-G-------ATT-------------TC--TACATAACA--TTGTGAAAGTAC-TTTT---TCG-AG---ATAAA-TG---AT-A---ATTCTCT-ATTACATAGGCATT---TA-TTTCCCTGAAACAGA-AA-GAGTT-ATCG-CCCTTGTGG-AATGCAGAAATTCCAACAT-----TT-AGCT-TGCATTTCAT---TTTT--ATTTT-G-TATGAAAAC-G-A-TCAATTTTC--AATA-CA-GATATA-----TTTTTAT-TT-GTAAGTT--A-TATC-AA---AACTTTAATATGTTTAGTA-GT---GT-C--TG-TCTATTATAT-CTA----CAAA---TC-A-AA-AT-AG-CATT--ATC-T--T-AAAAC-TT-AAATAAC--AT-AAA-TAT--TATTAAAATT-------TGG-TTATA--T----AAGCATTTCAC-CGCTATTATTAG-TTTGACTGTGAAAGT---TTGCAAATGCGGGGCATACAAGT-GTTTCAAATC--A--ATG-CAAT----CAATAG-AA--AATTT-C---AGTGTGATTCATAGAGG-TGA-TG--AAC-GC-A-TTGAGTG-GA-TA-TAC--TGT-CAT-A--GC-ATAG--AG--GAACA-GCGGATTATGCAAA
gi|7 : -------TTT-------------TTCTTTCATAATA--TTGTGAA-GTCA-TTCT----CG-AG---ATGAA-TG---ATAA---A--CCCT-AT-GTATATGCATT---T-----CC-TGACACA-A-AAAGAGCT-ATCG-TCCGTGTGG-AATGTAGAA-TGTTAATTT-----CT-AACT-TGCATTTCAT-ATTTTC--ATTTC-GGTAT--AACC-A-T-TCA-TTTT---AATA-CAAGACATG-----TTTGCAT-TG-GTA-GTTGAA-T-TT-AA---AA-------ATCTTTAATT-GG---GT-C--GGATTTGGCACAAACTA----CAGAA--TC-A-AA-AT-AG-CATTTGATC-T--T-ACAAC-G-------------------CT--TTTCAAAATG-------TCA-T-ATA--T----AAGCATTTTCC-CGCTATCAGGAG-TTTGACTGTG-AAGT---TTTCAAGAGCAGGGCATGGAAAT-G-CTCTAAGT--AT-TTG-CAAT----C-TTAGTTA--T---T-CA--AGTGTGGTTCATAGTTG-T-A-TG--AAC-GCAA-TTG------------------------------ATAG--AG--GAACA-GTGGG-TATGCAAt
gi|8 : gac-----TTTTTAT-TTTGTAAGTTAGA-T-TC-AACAAAA-------ATCTTAAATG-AG---GTTC--AGATTTGGCACAAACTA----C-AAA--TC-ACAACAT-AG-CATTTGATC-TTAT-AAAACGAT-TAATAAC--AT--AAATAT--TATT-AAATT-------TGG-T-ATA--TA---AAGCATTTCA--CGC-ACTATCAGTTTTGACTGTG-AAG----TTGCAAAAGT-GGACAT-CAGTT-G-TTACAATC--AAGTTGACATT----C-ATAG-AATTT---T-CA--AGTGTGA-TCATAGAGG-T-A-TG--AAT-GC-A-TTGA-TA-GATTA-TGTAAAGT-CAT-AGCGC-ATAG--AG--GAACAGGTGG--TATGCAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACAAATTGCTCTGCTGGCATATTTCCTATGATGCGCTAACGGCGTCATAGGAATATGCCAGAGAGCAATTTGCATTTCATAAACGCCATGATTCACTGAAAAACGTTATTCATTTCTATATGCA
Unaligned ( gi|12 ): TTATCAGTTAACTACATCATATCTGGCAAGGTCCCTTCCGGGTAGTCCGCACTATAAATTAAGTCCTAGTCAA
Unaligned ( gi|16 ): TTTCAAAAGCTTTATTTATTTTTTTAATTAAAATTCTTACACTTCAATGCA
Alignments
lowQualScore : 111 1111 22222222222 11 111 1 11 1 22222222 1 11111 5555555555555555555555 22222222 11 11 1111 11 1111 777777777777777777777 22222 11 1111 1111 44444444444444444444444 1 1111111 111 111 111 111111 1 11111 11 111111 1 1 1 1111111 1111 1 1111111 1111 11111 11111111 1111
lowQualScore : 6 6 9 6 2 6 3 111 6 0000 66 88888888888 0 88 11 8 555 0 111 0 3 11 0 3 44 99999999 6 3 2 8 6 3 111 66666 4 7 3 4444444444444444444444 77 99999999 6 00 6 44 1111 44 6 6 4444 6 99 333333333333333333333 6 22222 1 6 6 3 6 6 6 7 2 2 99 1 6 6 6 3 6 55 6 6 6 6 99 6 6 66 99 666 44 7 6 6 7 3 3 88 2 0000 2 3 7 0000 99 6 6 6 55555555555555555555555 77 1 5 0000000 000 0 5 000 1 000 77 5 88 3 0 111111 3 6 1 6 6 6 6 66 66666 6 6 55 77 5 0 33 5 666 5 77 5 222222 5 0 0 0 2 5 0 5 888 6666666 99 888 5 66 0000 3 777 777 5 5 0 5 66 5 5 5 0 66 55 0 66 0 6666666 5 5 66 5555 77 1 0 8 8 777 2 0 4 4 1 99999 4 0 8888 4 4 99999999 55 0 3 7 3 55 3 3 3 3 4 4 55 66 1111 4 55 55 8 66
lowQualScore : . . . . . . . ... . .... .. ........... . .. .. . ... . ... . . .. . . .. ........ . . . . . . ... ..... . . . ...................... .. ........ . .. . .. .... .. . . .... . .. ..................... . ..... . . . . . . . . . . .. . . . . . . .. . . . . .. . . .. .. ... .. . . . . . . .. . .... . . . .... .. . . . ....................... .. . . ....... ... . . ... . ... .. . .. . . ...... . . . . . . . .. ..... . . .. .. . . .. . ... . .. . ...... . . . . . . . . ... ....... .. ... . .. .... . ... ... . . . . .. . . . . .. .. . .. . ....... . . .. .... .. . . . . ... . . . . . ..... . . .... . . ........ .. . . . . .. . . . . . . .. .. .... . .. .. . ..
lowQualScore : 7 7 3 7 5 7 2 777 7 8888 33 66666666666 8 88 00 0 444 8 888 8 2 00 6 2 00 88888888 7 3 5 0 7 2 777 77777 2 3 0 6666666666666666666666 11 88888888 7 22 7 22 2222 00 7 7 2222 7 22 555555555555555555555 0 55555 0 7 7 5 7 7 7 3 5 5 88 0 7 7 7 5 7 77 7 7 7 7 22 7 7 33 22 888 00 3 7 7 3 2 5 33 5 8888 2 7 5 0000 22 7 7 7 00000000000000000000000 99 4 7 0000000 000 1 7 000 7 000 99 7 99 0 7 999999 3 7 7 7 7 7 7 22 77777 7 7 99 99 7 7 66 7 111 7 99 7 666666 0 0 0 1 2 0 0 0 888 2222222 55 888 0 99 6666 2 222 111 0 0 0 0 99 0 0 0 1 99 11 1 99 4 2222222 0 0 99 6666 55 0 9 9 9 888 9 1 0 0 0 55555 0 1 5555 0 0 77777777 55 4 6 3 6 00 6 6 6 6 0 0 55 55 8888 0 55 55 0 33
consensus : CTTGCTGTGT-GT-CGTGAGTGAG-TCTT-AAATCACCTTAG---ATAAA-TCATTT--T-CACATAAA---TA------AAACCGTTT-CA--CTG-TTGTTTTANGGTATTTGTTT--ATTATTTAAAGCTACCGTCAGGCCAGA--TAGTTTCCCTTTCGTGGGGTCCCAACAACAC---GTTGCA-TAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATA-----TATATAACCTCAAAGATTATATATG-----AT-----AG----AGAGTTA-CAAAAAAA---TC--TTCAGAATG-TGTACAAAT-ACACTGG-ATTGCGAT-A--ATGATT-ACAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTCATC-------TTTT-------GAAGATTGTCGAT-TTATACGGCGCTTTCGA-TGA-CGTAACAAT-GC-ACTGATGCTAT-TTTACGTCACT-TTGCAANCGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTTTTCTTGTCCT--CCAGA-T-TATTGTTT-TATTAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGCTGCAGCTGT--A-CGTGAAATTA-TT-ATCAA--TAGT-A-CA-G-------TTT-------------TTCTTGCATAACA--TTGTGAA-GTCA-TTTT---TCG-AG---ATAAA-TG---ATTA---A--CCCT-ATTGCATAGGCATT---TA-TTTCC-TGAAACAGA-AAAGAGTT-ATCG-CCCTTGTGG-AATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCAT-ATTTTT--ATTTT-GGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGATATA-----TTTTTAT-TT-GTA-GTTGAA-T-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--TATTAAAATT-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATTATCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGGCATACAAGT-G-TTCAAANC--A--TTG-CATT----C-ATAG-AA--A---T-CA--AGTGTGATTCATAGAGG-T-A-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GC-ATAG--AG--GAACA-GTGGA-TATGCAAA
Reference ( family-3249 ) : CTTGCTGTGT-GT-CGTGAGTGAG-TCTT-AAATCACCTTAG---ATAAA-TCATTT--T-CACATAAA---TA------AAACCGTTT-CA--CTG-TTGTTTTANGGTATTTGTTT--ATTATTTAAAGCTACCGTCAGGCCAGA--TAGTTTCCCTTTCGTGGGGTCCCAACAACAC---GTTGCA-TAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATA-----TATATAACCTCAAAGATTATATATG-----AT-----AG----AGAGTTA-CAAAAAAA---TC--TTCAGAATG-TGTACAAAT-ACACTGG-ATTGCGAT-A--ATGATT-ACAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTCATC-------TTTT-------GAAGATTGTCGAT-TTATACGGCGCTTTCGA-TGA-CGTAACAAT-GC-ACTGATGCTAT-TTTACGTCACT-TTGCAANCGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTTTTCTTGTCCT--CCAGA-T-TATTGTTT-TATTAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGCTGCAGCTGT--A-CGTGAAATTA-TT-ATCAA--TAGT-A-CA-G-------TTT-------------TTCTTGCATAACA--TTGTGAA-GTCA-TTTT---TCG-AG---ATAAA-TG---ATTA---A--CCCT-ATTGCATAGGCATT---TA-TTTCC-TGAAACAGA-AAAGAGTT-ATCG-CCCTTGTGG-AATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCAT-ATTTTT--ATTTT-GGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGATATA-----TTTTTAT-TT-GTA-GTTGAA-T-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--TATTAAAATT-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATTATCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGGCATACAAGT-G-TTCAAANC--A--TTG-CATT----C-ATAG-AA--A---T-CA--AGTGTGATTCATAGAGG-T-A-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GC-ATAG--AG--GAACA-GTGGA-TATGCAAA
gi|1 : CTTG-TGTGT-GTTCGTGA-TGGA-TATG-AAATCACCTTAACTAATAAAGTCATTT--T-CAC-TAAAATATA------AAACCGTT--CAAACTG-TTGTTT-AAGGTAAT-GTTTTAATTATCTAA--CTACTATCAGGCCA-A--TAGTTTTCCTT-CGTGGGTTCCCA-TAACAC---ATTGCA-TATGTGCCTAAGAGTTTGGATGGGATTTTTGCGTGTGCTAAAA-GGACA-----TGTACA-CCTCAAAGAT-ATATGTG-----A-------------GAGTTAACAGAATAA---TTCGTTCAGA-TT-TGTACACATGACACTGG-AGT-CGAT-AGTATGATTTACAAAGT--GTGAGTTATGCACTATTATCTCA-TTACCATTATTC-------------T-------GA-GAT-G-CGATGTTA-ATCGCGCTTTCGAGTGATCGTAGCAAT-G--ACTGATGCTAT-TT---G--------GCAAACGTCGTTG-TATCGTACGTA-CAATGC-GCCAA-AGTAC-TTAAC-AACGTC-AATAGGAAGTTT-A--GGTGGGAAAAGC-TTTGTCT-GTCCTAACGAGA-T-TATTGTTT--ATTAGAGG-CTAGGG-C-CCATA---GTTTTTGATTTT-CAAAAGCTG-AGCTGT--ATCGTGAA-TTA----AACAA--CAGT-AACA-G-------TTT-------------TTCTTGCATAACA--T-GTGAAAGTCA-TCCTCTCTCGCAGCATATACACTC---ACTC---A--CCTTTATTG-ATAGGCATT---TT-TTTCCATGAAACAGAGAAAGAGTTGATCG-CCTTTGTAG-AA-GTAGAA-TTG-AACACGATGCTT---CT-TACATTTCAT-GTTTTT--ATTTT-GGTAT--AAAC-ATATTCA-TTTTTTGAATG-CAAGGTATAATATCTTTTAATGTT-GTA---TATA-TCTCAAA---AA-------ATCTGTAATGCGGCTCGT-CCGGAATTTGGCACAAACTATCATCAATAGTTA-A-AA-ATGAGTCATTTGATCGT--TGAAAAC-ATGTAATAACAGAT-AAAATCCTGTATTAACATTCATGCCCTCG-T-ATA--TTAAGGAGCATTTCACGTGCTAAGCTTAG-TTT--CTGTG-AAGTGGATTGC-AAAGC-GGGCACACAAGT-G-TTCCAATC--G--T---CACTAGGAC-CTAG-AA--AT--T-CACTGTTGTG-TTCATAGAGG-T-A-TGGTAACGGCAA-TTGA-TCTGG-TAGTGT--AGT-CATGA--GC-ATGG--AG--GAACA-GTGG--TAT
gi|10 : ctatgaataaggaagaatggtaatagaatttttcacttcggaatgaacagttagggcgggtgtatgacaatgcaattgctctgctggcatggagcgcgttagcgcatcataggaataggccaagagagcaattgcatatgtcttaatgccatgtgtacaatgaaaacgttattacaccagctgttaaagatttccttttggttcgtttctccctattgtggctcggcatctgtatacattggtggcggaagcccaggaaacttagttacagctaattccatcgctagcatatCATACAAGT-A-TTCAAATC--AA-TTG-CATT----C-ATAG-AA--A---TTCA--AG---AATT-ATAGAGG-TTA-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GCAATAG--AG--GAATA-GTAGA-TATGCAtgc
gi|11 : GTG-AAGT---TTGCATAAGCGGGGCATACAAATTG-TTCAAAATCAA--TTG-CATT----C-ATGA-AA--A---TGCA--AGTGTAATTCATAGAGC-T-A-TG--AAC-GCAA-TTGA-TA-
gi|13 : TGAAATTTT-GCATGTGCTAAAAAGA--A-----TATATAACTTCAAAAATTATAT--------AT-----AG----AGAGTTA-CAAAAA
gi|14 : G-T-A-TG--AAC-GCAAATTGA-TA-GA-TA-TGC--AGTCCAT----GC-ATAG--AG--GAGCAGGCATA-TATGCAAA
gi|15 : aCTTGCTGTGT-GT-CGTGAATGAG-TCTT--AATCACCTTAG---ATAAA-TCATTTTAT-CACATt
gi|2 : CTTGCTGTGTTGT-CGTGAGTGAGGTCTT-AA-TCACCTT-G---ATAAA-TAATTT--TTCACA-AAA---TA------AA-CCGTTTTCA--CTGATTGTTTTATGGTATTTGTTT--ATTATTCAAAGCTACCGTCAGGCCAGAAATAGTTTCCCTT-CGTGGGGTTCCAACA---C---ATT-CA-TAGTTGT-TAAGATTTTG-ATGGAATTTT-GCATGTGCTAAAAAA-AGA-----TATGTAACCTCAAAGATTATA-ATGCGATCAT-----AATGTAAGAGTTC-CAAAAAAAATTTT--TTCAGAATGGTGTACAATA-ACACTGGGATTGCGATTA--ATGATT-ACAAAGTTTGTGAGTT-TG----ACTATCTCA-TT--CATTATTC-------------T-------GAAGATTGACGAT-TAATACGGCGCTTTCGA-TGA-CGTCACAAT-GC-ACTGATGCTACATTTACGTCA-T-TTGCAAACGTCAT-GGTA-CGGTCGTAACAATGCAGCCAACAT-AC-TTAACCAAC-TC-AATAGGAA-TTT-AGGGGTGGGAAA-GC-TTTTTCTTGTCC---ACAGATT-TATTGTTT-TATTAGAGGCCTAAAA-CATC-AAAACGATTTTGATTTT-CAAAAGCTGCAGCTGTAAA-CGTGAATTTA-TT-ATCAA--CAGTAA-CA-GT------TTT-------------TTCTTGCATACCAATTTGTGAA-GTCATTTTT---TTG-AG---CT-AA-TG---ATTG---A--CCTT-AATGCATAGGCATT---TATTTTCC-TGTAACAG--AAAGAGTT-ATCGCCCCTTGTGG-AATATAGAA-TTAAAACAT-----TTAAGCTCTGCATTTCAT-ATTTCTTAATTTT-GG-ATA-AAACAA-A-TCA-ATTTC--AATATCAAGATATA-----TTTTTAT-TTGGTA-G-TGAACT-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAT--TCAA-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TTATAAC--AT-AAAATCT--TATTAACATT-------TCG-T-ATATTT----AAGCATTTCG--CGCTATTGTTAGTTTTGA-TGTGAAAGT---ATGCAAAAGCGGGGCACAC-AGT-G-TTCAATCA--A--TTG-CAGT----C-ACAA-TA--A---T-GC--AGTGTGATTCATAGAGGTT-ACTG--AAC-GCAA-TTGA-TA-GA-T--TGC--AAT-CATCA--GC-AT-GTTAG--GAACA-ATGGA-TA-GCAAA
gi|3 : aaatgccaattgcttctgctggcatattctatgatgcgttagcggcatacatcaggaagctttgctggctattctatgatgcgcgtctagcgcatcataggaaatatgccagcagaggcaattgcatttcttaatgccatgttcacttgaaaacgtattcatttgttatagtttgcatttctgtttttccttttgtgcgaataaacatgatacatacactttggtcgtggcaatctaaattacttacagtaatccatcctagaataatattCTTGCTGTGT-GT-CGTGAGTGAG-TCTTTAAATCACCTTAG---ATAAA-ACATTT--T-CACATAAA---TA------AAACCGTTT-CA---TG-TTGTTTTAGGGTATTTGTT---ATTATTTAAAGCTAC-GTCAGGCCAGG--TAGTTTCCCTTTCGTTGGGTCCCAACAACA----GTTGCA-TAGG--TCTAAGATGTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATAATAATTATATAACCTCAAAGATTATATATG-----ATTATGTAG----AGATATA-CGAAAAAA---T---TTCAGAATG--GTACAAAT-ACACTGG-ATAGCGAT-A--ATGAT--GCAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTC-------------T-------GAAGATTGTCGAC-TTATACGGCGCTTTCGA-TGA-CGTAACAATTGC-ACTGATGCTAT-TC-ACGTCACT-TTGCAAACGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTT--CTTGTCCT--CCAGA-T-TAT-GTTT-TAT-AGAGG-CTAAAA-CATCAAAA-CG-TTTTGATTTTTCAAAAGCTGCAGCTGT--A-CATTAAATTG-TC-ATCAA--TAGT-A-CAAG-------CTT-------------TTCTTGCATAACA--TTGTGAA-GTCA-TTTT---TTG-AG---ATAAA-TG---ATTA---A--CCCT-ATCGCATAGG-AT-----A-TTTCC-TGAAACAGA-AAAGAGTT-ATCA-CCCTTGTGG-AATGTAGA--TTCCAACAT-----TT-AGCT--GCATTTCAT-ATTTTT--ATTTT---TAT--AAGC-A-A-TCA-TTTTC--AATA-CAAAATATA-----TTTTTAT-TT-GTT-GTTGAA-T-TC-AA---AA-------ATTTTTAATC-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC---AA-AT-AGCCATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--T-TTAAAATT-------CCGTT-ATA--T----AAGCATTTCAC-CGCTAGTAAAAG-TTTGACTGTG-AAGT---TTGCTAGGGCGGGGCATAGAAAT-G-CTCGAAGT--A--TTG-CATT----C-ATAG-AT--A---T-CA--AGTGCGGTTCATCGCGG-T-A-TG--AAC-GCAA-TTAA-TA-GA-CA-TGC--AGT--AT-A--GC-ATAG--AG--ATACA-GTGGA-TATGCAAAt
gi|4 : TTGCTGTGT-TT-CGTGAG--AA-T--T-ACATCACCTTAG---ATAAA-TCATTT--T-TACATAAA---TACATGTAAAACCGATT-TA--CTG-CTGTTTTATGATGTTTGTTT--ATTATCTAAAGCTA-CGTCAGGCCAGA--TAGTATCCTTTTTCTGAGGCCTTAA-AG---------GCA-TAGG-GTCT
gi|4 : acagctaattccataatagaactatCAAATATTATA---A-----GT-----AG----AAAGTTA-CAAAATT----TC--TTAAGAATG-TGTATAAAT-ACACTAG-AT-GAAAT-A--ATAAAT-ACAAAGTT-GTGTGTT-TG----TCTATCTCA-TT--TATTCTTCATCC------TTTT-------GTA---TCTCAAT---GTACGGTGTTTTCGA-TGA-CGAAACAAT-GC-ACTGATGCTAT-TTTACATCACT---GCAATCGTCAT-G-TA-CGTACGTAACAATGCAGCCAG-ATGACGTTAACCAACGTC-AATATAAA-TTT-A--GGCGGGAAA-GC-TTTTTCTTGACCT--CCAGG-CAAATTGTTT-TA-TAGAGG-CTAAAA-CATC-AAAATGATTTTGATTTC-CAAAAGC-----------------AACTCA-TT-ATCAA--TAGT-A-CA-GATTCTTCTTTTTTAAAAGAACTTTTCTTGCATAACA--TTGTGAA-GTCA-TTTT---TT--AG---ATAAA-TGATAATTATATA--CCCT-A-TAAATAGGCATTTTATA-TTTtcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaataggcattttatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|4 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtaGCATTTTAT-ATTTTT--ATTTTTGGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGGTACA-----TTTTTAT-TT-GAA-GTTGAA-T-TC-AA---AA-------GGCTTAAATG-GG---AT-G--GAATTCGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-TATTTGATC-T--T-CAAAC-AT-TAATAAC--AA-AAAATCT--TATCAAAATG-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATAATCAG-ACTGACTttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|4 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaatagATCAG-ACTGACTGTG-TAGT---TTGCATGAGCGGG-CATACAAAT-G-TTCAAAGTG-A--TTG-CATT----C-ATAG-AA--A---TACA--AGTGTGGTTC-T--------------AAC-GCAA-TTGA-TA-GA-GA-TGC--AGT-CAT-A--GC-ATAG--AA--GAACA-GATGA-TATGaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|5 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaataggcattttatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaCTTGCTGTGT-GT-CGTTC-TGAG-TCTT-AAATC------------------ATT------------------------AAACCATTT-CA--CTG-TTGTTTT--GGGATTTGTTT--ATTATTTAAAGCTAC-GTTAGGCCAGG--TA-TTTCCCTTTCGTGGGGTCC-AACAACACTGAGTTGAA-TAGG-GTGTACGATTTT---TGAAATTTT-GCATGTGCTAAAAAGGATA-----TATACA---TCAA-GATTATATGTG-----A-------------GAGTT--CAAAAAAA---T---TTCAGAATG-TGTACACAT-ACACTGG-AT---GAT-T--ATGATT-ACAA-GTT-GTGAGTT-TG----ACTA-CTCA-TT--CATTATCCATCGTTTTTTTTCT-------GAAGACTGTCGAT-ATATA-GGCGCTTTCGA-TGA-CG-AACAAT-GC-ATTGATGCTAT-TTTACGTCACT-TTGCAATCGTCAT-G-TA-CGTACGTAA-AATGCAGCCAA-ATGACGTAAACCAACGGC-AATAGGAA-TTT-A--GGTGGGAAA-GCTTTTTTCTTGTTCT--CCAGA-T-TATTGTTTCTA-TAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGATGCAGCTGT--A-CATAAAATTA-TTAATCAA--TAGT-A-CA-G---------T-------------TTCTTACATCACA--TTGTGAA-GTCA-TTTT---TTG-AG---ATAAA-TG---ATTA---A--CCCT-A-TGCATA-GCATT---TA-TTTCC-TGAAACAGA-AAGAGGTT-ATCG-CCCTTGTGGAAATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCATCATTTTT--ATTTT-GGTAT---AAC-A-A-TCA-TTTTC--AATA-CAAGATAT------TTTTTAT-TT-GTA-GTTAAA-T-TC--A---AA-------ATCTTTAAT--GA---GT-C--AGATTT-GCACAAACTA----C-AAA--TT-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAAT--C--ATAAAAATAT--TATTAAAATT-------TGG-T-ATA--T----AAGCATTTCAC-CG-TATCTTCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGTCATACAAGT-G-CTCAAATCA-A--TTG-TATT----C-ATAA-AA--AT--T-CA--AGTGTGATTCATAGA-G-T-A-TG--AAC-GCAA-TAGA-TA-GA-TA-TAC--AGT--AT-A---C-AAAG--AGTAGAACA-GTGGA-TATGCAAA
gi|6 : agtTTGCAATAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAA--GGATA-----TATA--ACCTCAAA-ATTATATAT-------------AG----AGAGTTA-CAAAAAAT---CC--TTCAGAATG-TGTACAAA--ACACTGG-ATTGCGAT-A--ATGAT---CAAAGTT-GTGAGTT-TG----ACTATCTCAATC--CATTATTCATC-------TTTTTGTTTCTGAAGATTGCCGAT---A-ACGGCGCTTTCGA-TGA-CGTAACAAT-GCCATTGAT-CAAT-TTTACGT-ACTGTTG-AATCGTCAT-G-TA-CGT-CTAAACAATGCAGCCAA-A-GACGTTAACCAACGTCCAATAGGAA-TTTTA--GGTGGGAAA-GC-TTTT-CTTGTTCT--CCAGA-T-TATTGTTT--ATTAGAGG-CTAAAAACATCAAAAACGATTTTGATTT--CAAAAGTTGCAGCTGT--A-CATAAAATTAATT-ATCAAAATAGT-A-CA-G-------ATT-------------TC--TACATAACA--TTGTGAAAGTAC-TTTT---TCG-AG---ATAAA-TG---AT-A---ATTCTCT-ATTACATAGGCATT---TA-TTTCCCTGAAACAGA-AA-GAGTT-ATCG-CCCTTGTGG-AATGCAGAAATTCCAACAT-----TT-AGCT-TGCATTTCAT---TTTT--ATTTT-G-TATGAAAAC-G-A-TCAATTTTC--AATA-CA-GATATA-----TTTTTAT-TT-GTAAGTT--A-TATC-AA---AACTTTAATATGTTTAGTA-GT---GT-C--TG-TCTATTATAT-CTA----CAAA---TC-A-AA-AT-AG-CATT--ATC-T--T-AAAAC-TT-AAATAAC--AT-AAA-TAT--TATTAAAATT-------TGG-TTATA--T----AAGCATTTCAC-CGCTATTATTAG-TTTGACTGTGAAAGT---TTGCAAATGCGGGGCATACAAGT-GTTTCAAATC--A--ATG-CAAT----CAATAG-AA--AATTT-C---AGTGTGATTCATAGAGG-TGA-TG--AAC-GC-A-TTGAGTG-GA-TA-TAC--TGT-CAT-A--GC-ATAG--AG--GAACA-GCGGATTATGCAAA
gi|7 : -------TTT-------------TTCTTTCATAATA--TTGTGAA-GTCA-TTCT----CG-AG---ATGAA-TG---ATAA---A--CCCT-AT-GTATATGCATT---T-----CC-TGACACA-A-AAAGAGCT-ATCG-TCCGTGTGG-AATGTAGAA-TGTTAATTT-----CT-AACT-TGCATTTCAT-ATTTTC--ATTTC-GGTAT--AACC-A-T-TCA-TTTT---AATA-CAAGACATG-----TTTGCAT-TG-GTA-GTTGAA-T-TT-AA---AA-------ATCTTTAATT-GG---GT-C--GGATTTGGCACAAACTA----CAGAA--TC-A-AA-AT-AG-CATTTGATC-T--T-ACAAC-G-------------------CT--TTTCAAAATG-------TCA-T-ATA--T----AAGCATTTTCC-CGCTATCAGGAG-TTTGACTGTG-AAGT---TTTCAAGAGCAGGGCATGGAAAT-G-CTCTAAGT--AT-TTG-CAAT----C-TTAGTTA--T---T-CA--AGTGTGGTTCATAGTTG-T-A-TG--AAC-GCAA-TTG------------------------------ATAG--AG--GAACA-GTGGG-TATGCAAt
gi|8 : gac-----TTTTTAT-TTTGTAAGTTAGA-T-TC-AACAAAA-------ATCTTAAATG-AG---GTTC--AGATTTGGCACAAACTA----C-AAA--TC-ACAACAT-AG-CATTTGATC-TTAT-AAAACGAT-TAATAAC--AT--AAATAT--TATT-AAATT-------TGG-T-ATA--TA---AAGCATTTCA--CGC-ACTATCAGTTTTGACTGTG-AAG----TTGCAAAAGT-GGACAT-CAGTT-G-TTACAATC--AAGTTGACATT----C-ATAG-AATTT---T-CA--AGTGTGA-TCATAGAGG-T-A-TG--AAT-GC-A-TTGA-TA-GATTA-TGTAAAGT-CAT-AGCGC-ATAG--AG--GAACAGGTGG--TATGCAAA
blockSeqs : T . A G C T A . . TAT AT TACATGTA TT . A TAT T C AA T C AC ACACTGAG A T C . . A GAT ATAAT T A A ATGCGATCATAATGTA A AATTTT G A G TG TA T T . . A . ATCGTTTTTTTTCT A TAAT C . . T T C A T C C GT A . G . T C TG G C . T GG . T TT . TT CT T C A A A A TT C AAA G G T TTA AA A . A ATTCTTCTTTTTTAAAAGAACTT AT A T TTG . . ATA T TAT TT . AT C TTATA C . A . C A A AA . A C CA TA T GA A A A . T A . G A G C A . CAA CTTTAAT G . T . . A T AA C . C . TA . G . . AA . . T T TT A C T T A . G T T T CAA A . A T AATTT . T T C . . A G . T . AA CC AGC A TT TA G AT
blockSeqs : . . G . C . A . . TT AT TA T . . TAG T C . T C AC ACAG . . C . . A GAT . T A G TATGATTATGTAG C TCC . T . AG A T . . . . . ATCTTTTTGTTTCT T TTAT C . . T . . . T C C T A . . . A . TG G . . . . . . TT . CA T T . . A A A T C A A T A ATT . . . . TTTT . . . TTG . . . T . . . TC C TAT . . A . . . . CC . . . A . . A . A . . . A . T A G . . . . . C . . . . A A AC . . . . . . . . . A . . . . . . C T T A . G . . A AAG . . . . TTTT . . G . . . . . . . . . C CA . . . G A
blockSeqs : . . G . C . A . . T AT TA T . . TAT T . . T T AC CA . . G . . A GAT . T A G TATAG A AT . T . TG A T . . . . . ATCCTTTT T ATAT C . . A . . . T C C T T . . . A . TG G . . . . . . TT . T T T . . A A A C C A A A C TT . . . . CTT . . . TTG . . . T . . . TT A TA . . G . . . . CC . . . A . . . . A . . . A . . . G . . . . . G . . . . A A A . . . . . . . . . A . . . . . . C A . . . G . . C AA . . . . ATT . . . . . . . . . . . . C A . . . . A
blockSeqs : . . G . C . . . . T A . T . . T . . . . . A G . . C . . A AG . C A T AGTAG A TC . T . G T . . . . . . T T GT C . . T . . . T C C T T . . . A . T G . . . . . . T . T T . . . . A A T C A A A A TC . . . . ATT . . . TCG . . . T . . . T C TA . . A . . . . CC . . . A . . . . A . . . A . . . A . . . . . A . . . . A A A . . . . . . . . . A . . . . . . C C . . . G . . G GA . . . . ATG . . . . . . . . . . . . C A . . . . A
blockSeqs : . . . . . . . . . . . . . . . . A . . . G TGTGA A AT . . . . A . . . . . . T C A . . . . . . . . . . . T . . . . . G . . . . . . . . . T . . . . . . . . . . . . A TT . . . . TTT . . . TT . . . A . . . T C A . . . . . . . TT . . . A . . . . A . . . G . . . G . . . . . T . . . . A A A . . . . . . . . . A . . . . . . C T . . . G . . G AA . . . . ATA . . . . . . . . . . . . C A . . . . A
blockSeqs : . TATAG . T . . . CG . . . . . . . T T T . . . . . T . . . . . . . A . . . . . G . . . . . A A . . . . . . . . . . . . . . . . . C . . . G . . T AT . . . . ATT . . . . . . . . . . . . C A . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . A . . T A . . . . AT . . . . . . . . . . . . . A . . . . A
blockSeqs : . . . . . . G A . . . . AT . . . . . . . . . . . . . . . . . . G
blockSeqs : . . T A . . . . TT . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : *** AT TA********* T* ** TAT T** AC CAG***** A* AT****** T* TG A*** T* **** ** ATCTTTT************** T* ** T* A*** TT** TTG**** *** CC ***** A** ** A***** G* *** ** **** A** ** ** ******* **** C* *** AA*** **** ** ** A*** A*
originalCons : CTTGCTGTGT-GT-CGTGAGTGAG-TCTT-AAATCACCTTAG---ATAAA-TCATTT--T-CACATAAA---TA------AAACCGTTT-CA--CTG-TTGTTTTANGGTATTTGTTT--ATTATTTAAAGCTACCGTCAGGCCAGA--TAGTTTCCCTTTCGTGGGGTCCCAACAACAC---GTTGCA-TAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATA-----TATATAACCTCAAAGATTATATATG-----AT-----AG----AGAGTTA-CAAAAAAA---TC--TTCAGAATG-TGTACAAAT-ACACTGG-ATTGCGAT-A--ATGATT-ACAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTCATC-------TTTT-------GAAGATTGTCGAT-TTATACGGCGCTTTCGA-TGA-CGTAACAAT-GC-ACTGATGCTAT-TTTACGTCACT-TTGCAANCGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTTTTCTTGTCCT--CCAGA-T-TATTGTTT-TATTAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGCTGCAGCTGT--A-CGTGAAATTA-TT-ATCAA--TAGT-A-CA-G-------TTT-------------TTCTTGCATAACA--TTGTGAA-GTCA-TTTT---TCG-AG---ATAAA-TG---ATTA---A--CCCT-ATTGCATAGGCATT---TA-TTTCC-TGAAACAGA-AAAGAGTT-ATCG-CCCTTGTGG-AATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCAT-ATTTTT--ATTTT-GGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGATATA-----TTTTTAT-TT-GTA-GTTGAA-T-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--TATTAAAATT-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATTATCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGGCATACAAGT-G-TTCAAANC--A--TTG-CATT----C-ATAG-AA--A---T-CA--AGTGTGATTCATAGAGG-T-A-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GC-ATAG--AG--GAACA-GTGGA-TATGCAAA
finalCons : CTTGCTGTGT-GT-CGTGAGTGAG-TCTT-AAATCACCTTAG---ATAAA-TCATTT--T-CACATAAATA---------AAACCGTTT-CA--CTG-TTGTTTTATGGTATTTGTTT--ATTATTTAAAGCTACCGTCAGGCCAGA--TAGTTTCCCTTTCGTGGGGTCCCAACACAG-----TTGCA-TAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATA-----TATATAACCTCAAAGATTATATATG-----AT-----AG----AGAGTTA-CAAAAAAAT------TTCAGAATG-TGTACAAAT-ACACTGG-ATTGCGATA---ATGATT-ACAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTCATCTTTT--------------GAAGATTGTCGAT-TTATACGGCGCTTTCGA-TGA-CGTAACAAT-GC-ACTGATGCTAT-TTTACGTCACTT-TGCAANCGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTTTTCTTGTCCT--CCAGA-T-TATTGTTTT-ATTAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGCTGCAGCTGTA---CGTGAAATTATT--ATCAA--TAGT-A-CA-G-------TTT-------------TTCTTGCATAACA--TTGTGAA-GTCA-TTTTTTG----AG---ATAAA-TG---ATTA---A--CCCT-ATTGCATAGGCATT---TA-TTTCC-TGAAACAGA-AAAGAGTT-ATCG-CCCTTGTGG-AATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCAT-ATTTTT--ATTTT-GGTAT--AAAC-AA--TCA-TTTTC--AATA-CAAGATATA-----TTTTTAT-TT-GTA-GTTGAA-T-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--TATTAAAATT-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATTATCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGGCATACAAGT-G-TTCAAANCAA---TTG-CATT----C-ATAG-AA--A---T-CA--AGTGTGATTCATAGAGG-T-A-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CATA---GC-ATAG--AG--GAACA-GTGGA-TATGCAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACAAATTGCTCTGCTGGCATATTTCCTATGATGCGCTAACGGCGTCATAGGAATATGCCAGAGAGCAATTTGCATTTCATAAACGCCATGATTCACTGAAAAACGTTATTCATTTCTATATGCA
Unaligned ( gi|12 ): TTATCAGTTAACTACATCATATCTGGCAAGGTCCCTTCCGGGTAGTCCGCACTATAAATTAAGTCCTAGTCAA
Unaligned ( gi|16 ): TTTCAAAAGCTTTATTTATTTTTTTAATTAAAATTCTTACACTTCAATGCA
Alignments
lowQualScore : 111 1111 22222222222 11 11 111 1 11 1 11 11 111111 1 11111 5555555555555555555555 111111 111 111 11 11 1111 11 1111 777777777777777777777 22222 11 1111 1111 44444444444444444444444 1 111111 111 111 111 111111 1 11111 11 111111 1 1 1 1111111 1111 1 1111111 1111 11111111 1111
lowQualScore : 6 6 9 6 2 6 3 111 6 0000 66 88888888888 0 88 11 8 11 0 111 0 3 11 0 11 11 555555 6 3 2 8 6 3 111 66666 4 7 3 4444444444444444444444 77 1 999999 111 111 6 00 6 44 1111 44 6 6 4444 6 99 333333333333333333333 6 22222 1 6 6 3 6 6 6 7 2 2 99 1 6 6 6 3 6 55 6 6 6 6 99 6 6 66 99 666 44 7 6 6 7 3 3 88 2 0000 2 3 7 0000 99 6 6 6 55555555555555555555555 77 1 5 333333 000 0 5 000 1 000 77 5 88 3 0 111111 3 6 1 6 6 6 6 66 66666 6 6 55 77 5 0 33 5 666 5 77 5 222222 5 0 0 0 2 5 0 5 888 6666666 99 888 5 66 0000 3 777 777 5 5 0 5 66 5 5 5 0 66 55 0 66 0 6666666 5 5 66 5555 77 1 0 8 8 777 2 0 4 4 7 66 4 8 0 8888 4 4 99999999 55 0 3 7 3 55 3 3 3 3 4 4 55 66 1111 4 55 55 8 66
lowQualScore : . . . . . . . ... . .... .. ........... . .. .. . .. . ... . . .. . .. .. ...... . . . . . . ... ..... . . . ...................... .. . ...... ... ... . .. . .. .... .. . . .... . .. ..................... . ..... . . . . . . . . . . .. . . . . . . .. . . . . .. . . .. .. ... .. . . . . . . .. . .... . . . .... .. . . . ....................... .. . . ...... ... . . ... . ... .. . .. . . ...... . . . . . . . .. ..... . . .. .. . . .. . ... . .. . ...... . . . . . . . . ... ....... .. ... . .. .... . ... ... . . . . .. . . . . .. .. . .. . ....... . . .. .... .. . . . . ... . . . . . .. . . . .... . . ........ .. . . . . .. . . . . . . .. .. .... . .. .. . ..
lowQualScore : 7 7 3 7 5 7 2 777 7 8888 33 66666666666 8 88 00 0 22 8 888 8 2 00 6 00 00 000000 7 3 5 0 7 2 777 77777 2 3 0 6666666666666666666666 11 7 888888 777 777 7 22 7 22 2222 00 7 7 2222 7 22 555555555555555555555 0 55555 0 7 7 5 7 7 7 3 5 5 88 0 7 7 7 5 7 77 7 7 7 7 22 7 7 33 22 888 00 3 7 7 3 2 5 33 5 8888 2 7 5 0000 22 7 7 7 00000000000000000000000 99 4 7 000000 000 1 7 000 7 000 99 7 99 0 7 999999 3 7 7 7 7 7 7 22 77777 7 7 99 99 7 7 66 7 111 7 99 7 666666 0 0 0 1 2 0 0 0 888 2222222 55 888 0 99 6666 2 222 111 0 0 0 0 99 0 0 0 1 99 11 1 99 4 2222222 0 0 99 6666 55 0 9 9 9 888 9 1 0 0 3 44 0 0 1 5555 0 0 77777777 55 4 6 3 6 00 6 6 6 6 0 0 55 55 8888 0 55 55 0 33
consensus : CTTGCTGTGT-GT-CGTGAGTGAG-TCTT-AAATCACCTTAG---ATAAA-TCATTT--T-CACATAAA---TA------AAACCGTTT-CA--CTG-TTGTTTTATGGTATTTGTTT--ATTATTTAAAGCTACCGTCAGGCCAGA--TAGTTTCCCTTTCGTGGGGTCC--CA--ACA-C--AGTTGCA-TAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATA-----TATATAACCTCAAAGATTATATATG-----AT-----AG----AGAGTTA-CAAAAAA-A----TT---TC---AGAATG-TGTACAAAT-ACACTGG-ATTGCGAT-A--ATGATT-ACAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTCATC-------TTTT-------GAAGATTGTCGAT-TTATACGGCGCTTTCGA-TGA-CGTAACAAT-GC-ACTGATGCTAT-TTTACGTCACT-TTGCAANCGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTTTTCTTGTCCT--CCAGA-T-TATTGTTT-TATTAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGCTGCAGCTGT--A-CGTGAAATTA-TT-ATCAA--TAGT-A-CA-G-------TTT-------------TTCTTGCATAACA--TTGTGAA-GTCA-TTTTTT---G-AG---ATAAA-TG---ATTA---A--CCCT-ATTGCATAGGCATT---TA-TTTCC-TGAAACAGA-AAAGAGTT-ATCG-CCCTTGTGG-AATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCAT-ATTTTT--ATTTT-GGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGATATA-----TTTTTAT-TT-GTA-GTTGAA-T-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--TATTAAAATT-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATTATCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGGCATACAAGT-G-TTCAAAT-CAA-TTG-CATT----C-ATAG-AA--A---T-CA--AGTGTGATTCATAGAGG-T-A-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GC-ATAG--AG--GAACA-GTGGA-TATGCAAA
Reference ( family-3249 ) : CTTGCTGTGT-GT-CGTGAGTGAG-TCTT-AAATCACCTTAG---ATAAA-TCATTT--T-CACATAAA---TA------AAACCGTTT-CA--CTG-TTGTTTTATGGTATTTGTTT--ATTATTTAAAGCTACCGTCAGGCCAGA--TAGTTTCCCTTTCGTGGGGTCC--CA--ACA-C--AGTTGCA-TAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATA-----TATATAACCTCAAAGATTATATATG-----AT-----AG----AGAGTTA-CAAAAAA-A----TT---TC---AGAATG-TGTACAAAT-ACACTGG-ATTGCGAT-A--ATGATT-ACAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTCATC-------TTTT-------GAAGATTGTCGAT-TTATACGGCGCTTTCGA-TGA-CGTAACAAT-GC-ACTGATGCTAT-TTTACGTCACT-TTGCAANCGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTTTTCTTGTCCT--CCAGA-T-TATTGTTT-TATTAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGCTGCAGCTGT--A-CGTGAAATTA-TT-ATCAA--TAGT-A-CA-G-------TTT-------------TTCTTGCATAACA--TTGTGAA-GTCA-TTTTTT---G-AG---ATAAA-TG---ATTA---A--CCCT-ATTGCATAGGCATT---TA-TTTCC-TGAAACAGA-AAAGAGTT-ATCG-CCCTTGTGG-AATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCAT-ATTTTT--ATTTT-GGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGATATA-----TTTTTAT-TT-GTA-GTTGAA-T-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--TATTAAAATT-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATTATCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGGCATACAAGT-G-TTCAAAN-CAA-TTG-CATT----C-ATAG-AA--A---T-CA--AGTGTGATTCATAGAGG-T-A-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GC-ATAG--AG--GAACA-GTGGA-TATGCAAA
gi|1 : CTTG-TGTGT-GTTCGTGA-TGGA-TATG-AAATCACCTTAACTAATAAAGTCATTT--T-CAC-TAAAATATA------AAACCGTT--CAAACTG-TTGTTTAA-GGTAAT-GTTTTAATTATCTAA--CTACTATCAGGCCA-A--TAGTTTTCCTT-CGTGGGTTCC--CATAACA-C--A-TTGCA-TATGTGCCTAAGAGTTTGGATGGGATTTTTGCGTGTGCTAAAA-GGACA-----TGTACA-CCTCAAAGAT-ATATGTG-----A-------------GAGTTAACAGAATA-A----TTCGTTC---AGA-TT-TGTACACATGACACTGG-AGT-CGAT-AGTATGATTTACAAAGT--GTGAGTTATGCACTATTATCTCA-TTACCATTATTC-------------T-------GA-GAT-G-CGATGTTA-ATCGCGCTTTCGAGTGATCGTAGCAAT-G--ACTGATGCTAT-TT---G--------GCAAACGTCGTTG-TATCGTACGTA-CAATGC-GCCAA-AGTAC-TTAAC-AACGTC-AATAGGAAGTTT-A--GGTGGGAAAAGC-TTTGTCT-GTCCTAACGAGA-T-TATTGTTT--ATTAGAGG-CTAGGG-C-CCATA---GTTTTTGATTTT-CAAAAGCTG-AGCTGT--ATCGTGAA-TTA----AACAA--CAGT-AACA-G-------TTT-------------TTCTTGCATAACA--T-GTGAAAGTCA-TCCTCTCTCGCAGCATATACACTC---ACTC---A--CCTTTATTG-ATAGGCATT---TT-TTTCCATGAAACAGAGAAAGAGTTGATCG-CCTTTGTAG-AA-GTAGAA-TTG-AACACGATGCTT---CT-TACATTTCAT-GTTTTT--ATTTT-GGTAT--AAAC-ATATTCA-TTTTTTGAATG-CAAGGTATAATATCTTTTAATGTT-GTA---TATA-TCTCAAA---AA-------ATCTGTAATGCGGCTCGT-CCGGAATTTGGCACAAACTATCATCAATAGTTA-A-AA-ATGAGTCATTTGATCGT--TGAAAAC-ATGTAATAACAGAT-AAAATCCTGTATTAACATTCATGCCCTCG-T-ATA--TTAAGGAGCATTTCACGTGCTAAGCTTAG-TTT--CTGTG-AAGTGGATTGC-AAAGC-GGGCACACAAGT-G-TTC-----CAA-TCGTCACTAGGAC-CTAG-AA--AT--T-CACTGTTGTG-TTCATAGAGG-T-A-TGGTAACGGCAA-TTGA-TCTGG-TAGTGT--AGT-CATGA--GC-ATGG--AG--GAACA-GTGG--TAT
gi|10 : ctatgaataaggaagaatggtaatagaatttttcacttcggaatgaacagttagggcgggtgtatgacaatgcaattgctctgctggcatggagcgcgttagcgcatcataggaataggccaagagagcaattgcatatgtcttaatgccatgtgtacaatgaaaacgttattacaccagctgttaaagatttccttttggttcgtttctccctattgtggctcggcatctgtatacattggtggcggaagcccaggaaacttagttacagctaattccatcgctagcatatCATACAAGT-A-TTCAAAT-CAA-TTG-CATT----C-ATAG-AA--A---TTCA--AG---AATT-ATAGAGG-TTA-TG--AAC-GCAA-TTGA-TA-GA-TA-TGC--AGT-CAT-A--GCAATAG--AG--GAATA-GTAGA-TATGCAtgc
gi|11 : GTG-AAGT---TTGCATAAGCGGGGCATACAAATTG-TTCAAAATCAA-TTG-CATT----C-ATGA-AA--A---TGCA--AGTGTAATTCATAGAGC-T-A-TG--AAC-GCAA-TTGA-TA-
gi|13 : TGAAATTTT-GCATGTGCTAAAAAGA--A-----TATATAACTTCAAAAATTATAT--------AT-----AG----AGAGTTA-CAAAAA
gi|14 : G-T-A-TG--AAC-GCAAATTGA-TA-GA-TA-TGC--AGTCCAT----GC-ATAG--AG--GAGCAGGCATA-TATGCAAA
gi|15 : aCTTGCTGTGT-GT-CGTGAATGAG-TCTT--AATCACCTTAG---ATAAA-TCATTTTAT-CACATt
gi|2 : CTTGCTGTGTTGT-CGTGAGTGAGGTCTT-AA-TCACCTT-G---ATAAA-TAATTT--TTCACA-AAA---TA------AA-CCGTTTTCA--CTGATTGTTTTATGGTATTTGTTT--ATTATTCAAAGCTACCGTCAGGCCAGAAATAGTTTCCCTT-CGTGGGGTTC--CA--ACA-C--A-TT-CA-TAGTTGT-TAAGATTTTG-ATGGAATTTT-GCATGTGCTAAAAAA-AGA-----TATGTAACCTCAAAGATTATA-ATGCGATCAT-----AATGTAAGAGTTC-CAAAAAA-AATTTTT---TC---AGAATGGTGTACAATA-ACACTGGGATTGCGATTA--ATGATT-ACAAAGTTTGTGAGTT-TG----ACTATCTCA-TT--CATTATTC-------------T-------GAAGATTGACGAT-TAATACGGCGCTTTCGA-TGA-CGTCACAAT-GC-ACTGATGCTACATTTACGTCA-T-TTGCAAACGTCAT-GGTA-CGGTCGTAACAATGCAGCCAACAT-AC-TTAACCAAC-TC-AATAGGAA-TTT-AGGGGTGGGAAA-GC-TTTTTCTTGTCC---ACAGATT-TATTGTTT-TATTAGAGGCCTAAAA-CATC-AAAACGATTTTGATTTT-CAAAAGCTGCAGCTGTAAA-CGTGAATTTA-TT-ATCAA--CAGTAA-CA-GT------TTT-------------TTCTTGCATACCAATTTGTGAA-GTCATTTTTTT---G-AG---CT-AA-TG---ATTG---A--CCTT-AATGCATAGGCATT---TATTTTCC-TGTAACAG--AAAGAGTT-ATCGCCCCTTGTGG-AATATAGAA-TTAAAACAT-----TTAAGCTCTGCATTTCAT-ATTTCTTAATTTT-GG-ATA-AAACAA-A-TCA-ATTTC--AATATCAAGATATA-----TTTTTAT-TTGGTA-G-TGAACT-TC-AA---AA-------ATCTTTAATG-GG---GT-C--GGATTTGGCACAAACTA----CAAAT--TCAA-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TTATAAC--AT-AAAATCT--TATTAACATT-------TCG-T-ATATTT----AAGCATTTCG--CGCTATTGTTAGTTTTGA-TGTGAAAGT---ATGCAAAAGCGGGGCACAC-AGT-G-TTC-AAT-CAA-TTG-CAGT----C-ACAA-TA--A---T-GC--AGTGTGATTCATAGAGGTT-ACTG--AAC-GCAA-TTGA-TA-GA-T--TGC--AAT-CATCA--GC-AT-GTTAG--GAACA-ATGGA-TA-GCAAA
gi|3 : aaatgccaattgcttctgctggcatattctatgatgcgttagcggcatacatcaggaagctttgctggctattctatgatgcgcgtctagcgcatcataggaaatatgccagcagaggcaattgcatttcttaatgccatgttcacttgaaaacgtattcatttgttatagtttgcatttctgtttttccttttgtgcgaataaacatgatacatacactttggtcgtggcaatctaaattacttacagtaatccatcctagaataatattCTTGCTGTGT-GT-CGTGAGTGAG-TCTTTAAATCACCTTAG---ATAAA-ACATTT--T-CACATAAA---TA------AAACCGTTT-CA---TG-TTGTTTTAGGGTATTTGTT---ATTATTTAAAGCTAC-GTCAGGCCAGG--TAGTTTCCCTTTCGTTGGGTCC--CA--ACAAC--AGTTGCA-TAGG--TCTAAGATGTTG-ATGAAATTTT-GCATGTGCTAAAAAGGATAATAATTATATAACCTCAAAGATTATATATG-----ATTATGTAG----AGATATA-CGAAAAA-A----TT---TC---AGAATG--GTACAAAT-ACACTGG-ATAGCGAT-A--ATGAT--GCAAAGTT-GTGAGTT-TG----ACTATCTCA-TT--CATTATTC-------------T-------GAAGATTGTCGAC-TTATACGGCGCTTTCGA-TGA-CGTAACAATTGC-ACTGATGCTAT-TC-ACGTCACT-TTGCAAACGTCAT-G-TA-CGTACGTAACAATGCAGCCAA-ATGACGTTAACCAACGTC-AATAGGAA-TTT-A--GGTGGGAAA-GC-TTT--CTTGTCCT--CCAGA-T-TAT-GTTT-TAT-AGAGG-CTAAAA-CATCAAAA-CG-TTTTGATTTTTCAAAAGCTGCAGCTGT--A-CATTAAATTG-TC-ATCAA--TAGT-A-CAAG-------CTT-------------TTCTTGCATAACA--TTGTGAA-GTCA-TTTTTT---G-AG---ATAAA-TG---ATTA---A--CCCT-ATCGCATAGG-AT-----A-TTTCC-TGAAACAGA-AAAGAGTT-ATCA-CCCTTGTGG-AATGTAGA--TTCCAACAT-----TT-AGCT--GCATTTCAT-ATTTTT--ATTTT---TAT--AAGC-A-A-TCA-TTTTC--AATA-CAAAATATA-----TTTTTAT-TT-GTT-GTTGAA-T-TC-AA---AA-------ATTTTTAATC-GG---GT-C--GGATTTGGCACAAACTA----CAAAA--TC---AA-AT-AGCCATTTGATC-T--T-AAAAC-AT-TAATAAC--AT-AAAATCT--T-TTAAAATT-------CCGTT-ATA--T----AAGCATTTCAC-CGCTAGTAAAAG-TTTGACTGTG-AAGT---TTGCTAGGGCGGGGCATAGAAAT-G-CTCGAAG-T-A-TTG-CATT----C-ATAG-AT--A---T-CA--AGTGCGGTTCATCGCGG-T-A-TG--AAC-GCAA-TTAA-TA-GA-CA-TGC--AGT--AT-A--GC-ATAG--AG--ATACA-GTGGA-TATGCAAAt
gi|4 : TTGCTGTGT-TT-CGTGAG--AA-T--T-ACATCACCTTAG---ATAAA-TCATTT--T-TACATAAA---TACATGTAAAACCGATT-TA--CTG-CTGTTTTATGATGTTTGTTT--ATTATCTAAAGCTA-CGTCAGGCCAGA--TAGTATCCTTTTTCTGAGGCCT--TA--A------AG--GCA-TAGG-GTCT
gi|4 : acagctaattccataatagaactatCAAATATTATA---A-----GT-----AG----AAAGTTA-CAAAA--------TT---TCTTAAGAATG-TGTATAAAT-ACACTAG-AT-GAAAT-A--ATAAAT-ACAAAGTT-GTGTGTT-TG----TCTATCTCA-TT--TATTCTTCATCC------TTTT-------GTA---TCTCAAT---GTACGGTGTTTTCGA-TGA-CGAAACAAT-GC-ACTGATGCTAT-TTTACATCACT---GCAATCGTCAT-G-TA-CGTACGTAACAATGCAGCCAG-ATGACGTTAACCAACGTC-AATATAAA-TTT-A--GGCGGGAAA-GC-TTTTTCTTGACCT--CCAGG-CAAATTGTTT-TA-TAGAGG-CTAAAA-CATC-AAAATGATTTTGATTTC-CAAAAGC-----------------AACTCA-TT-ATCAA--TAGT-A-CA-GATTCTTCTTTTTTAAAAGAACTTTTCTTGCATAACA--TTGTGAA-GTCA-TTTTTT-----AG---ATAAA-TGATAATTATATA--CCCT-A-TAAATAGGCATTTTATA-TTTtcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaataggcattttatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|4 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtaGCATTTTAT-ATTTTT--ATTTTTGGTAT--AAAC-A-A-TCA-TTTTC--AATA-CAAGGTACA-----TTTTTAT-TT-GAA-GTTGAA-T-TC-AA---AA-------GGCTTAAATG-GG---AT-G--GAATTCGGCACAAACTA----CAAAA--TC-A-AA-AT-AG-TATTTGATC-T--T-CAAAC-AT-TAATAAC--AA-AAAATCT--TATCAAAATG-------TCG-T-ATA--T----AAGCATTTCAC-CGCTATAATCAG-ACTGACTttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|4 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaatagATCAG-ACTGACTGTG-TAGT---TTGCATGAGCGGG-CATACAAAT-G-TTCAAAG-TGA-TTG-CATT----C-ATAG-AA--A---TACA--AGTGTGGTTC-T--------------AAC-GCAA-TTGA-TA-GA-GA-TGC--AGT-CAT-A--GC-ATAG--AA--GAACA-GATGA-TATGaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaatcagactgactgtgtagtttgcatgagcgggcatacaaatgttcaaagtgattgcattcatagaaatacaagtgtggttctaacgcaattgatagagatgcagtcatagcatagaagaacagatgatatg
gi|5 : acagctaattccataatagaactatttgctgtgtttcgtgagaattacatcaccttagataaatcatttttacataaatacatgtaaaaccgatttactgctgttttatgatgtttgtttattatctaaagctacgtcaggccagatagtatcctttttctgaggccttaaaggcatagggtcttcggtacaaatattataagtagaaagttacaaaatttcttaagaatgtgtataaatacactagatgaaataataaatacaaagttgtgtgtttgtctatctcatttattcttcatccttttgtatctcaatgtacggtgttttcgatgacgaaacaatgcactgatgctattttacatcactgcaatcgtcatgtacgtacgtaacaatgcagccagatgacgttaaccaacgtcaatataaatttaggcgggaaagctttttcttgacctccaggcaaattgttttatagaggctaaaacatcaaaatgattttgatttccaaaagcaactcattatcaatagtacagattcttcttttttaaaagaacttttcttgcataacattgtgaagtcattttttagataaatgataattatataccctataaataggcattttatatttttatttttggtataaacaatcattttcaatacaaggtacatttttatttgaagttgaattcaaaaggcttaaatgggatggaattcggcacaaactacaaaatcaaaatagtatttgatcttcaaacattaataacaaaaaatcttatcaaaatgtcgtatataagcatttcaccgctataatcagactgactaattgtggcaaggcccttccgggcagtccgcactataaattaattctcaatcaatcaCTTGCTGTGT-GT-CGTTC-TGAG-TCTT-AAATC------------------ATT------------------------AAACCATTT-CA--CTG-TTGTTTT--GGGATTTGTTT--ATTATTTAAAGCTAC-GTTAGGCCAGG--TA-TTTCCCTTTCGTGGGGTCCAACA--ACA-CTGAGTTGAA-TAGG-GTGTACGATTTT---TGAAATTTT-GCATGTGCTAAAAAGGATA-----TATACA---TCAA-GATTATATGTG-----A-------------GAGTT--CAAAAAA-A----TT---TC---AGAATG-TGTACACAT-ACACTGG-AT---GAT-T--ATGATT-AC-AAGTT-GTGAGTT-TG----ACTA-CTCA-TT--CATTATCCATCGTTTTTTTTCT-------GAAGACTGTCGAT-ATATA-GGCGCTTTCGA-TGA-CG-AACAAT-GC-ATTGATGCTAT-TTTACGTCACT-TTGCAATCGTCAT-G-TA-CGTACGTAA-AATGCAGCCAA-ATGACGTAAACCAACGGC-AATAGGAA-TTT-A--GGTGGGAAA-GCTTTTTTCTTGTTCT--CCAGA-T-TATTGTTTCTA-TAGAGG-CTAAAA-CATCAAAAACGATTTTGATTTT-CAAAAGATGCAGCTGT--A-CATAAAATTA-TTAATCAA--TAGT-A-CA-G---------T-------------TTCTTACATCACA--TTGTGAA-GTCA-TTTTTT---G-AG---ATAAA-TG---ATTA---A--CCCT-A-TGCATA-GCATT---TA-TTTCC-TGAAACAGA-AAGAGGTT-ATCG-CCCTTGTGGAAATGTAGAA-TTCCAACAT-----TT-AGCT-TGCATTTCATCATTTTT--ATTTT-GGTAT---AAC-A-A-TCA-TTTTC--AATA-CAAGATAT------TTTTTAT-TT-GTA-GTTAAA-T-TC--A---AA-------ATCTTTAAT--GA---GT-C--AGATTT-GCACAAACTA----C-AAA--TT-A-AA-AT-AG-CATTTGATC-T--T-AAAAC-AT-TAAT--C--ATAAAAATAT--TATTAAAATT-------TGG-T-ATA--T----AAGCATTTCAC-CG-TATCTTCAG-TTTGACTGTG-AAGT---TTGCAAAAGCGGGTCATACAAGT-G-CTCAAAT-CAA-TTG-TATT----C-ATAA-AA--AT--T-CA--AGTGTGATTCATAGA-G-T-A-TG--AAC-GCAA-TAGA-TA-GA-TA-TAC--AGT--AT-A---C-AAAG--AGTAGAACA-GTGGA-TATGCAAA
gi|6 : agtTTGCAATAGG-GTCTAAGATTTTG-ATGAAATTTT-GCATGTGCTAAA--GGATA-----TATA--ACCTCAAA-ATTATATAT-------------AG----AGAGTTA-CAAAAAATC----CT---TC---AGAATG-TGTACAAA--ACACTGG-ATTGCGAT-A--ATGAT---CAAAGTT-GTGAGTT-TG----ACTATCTCAATC--CATTATTCATC-------TTTTTGTTTCTGAAGATTGCCGAT---A-ACGGCGCTTTCGA-TGA-CGTAACAAT-GCCATTGAT-CAAT-TTTACGT-ACTGTTG-AATCGTCAT-G-TA-CGT-CTAAACAATGCAGCCAA-A-GACGTTAACCAACGTCCAATAGGAA-TTTTA--GGTGGGAAA-GC-TTTT-CTTGTTCT--CCAGA-T-TATTGTTT--ATTAGAGG-CTAAAAACATCAAAAACGATTTTGATTT--CAAAAGTTGCAGCTGT--A-CATAAAATTAATT-ATCAAAATAGT-A-CA-G-------ATT-------------TC--TACATAACA--TTGTGAAAGTAC-TTTTTC---G-AG---ATAAA-TG---AT-A---ATTCTCT-ATTACATAGGCATT---TA-TTTCCCTGAAACAGA-AA-GAGTT-ATCG-CCCTTGTGG-AATGCAGAAATTCCAACAT-----TT-AGCT-TGCATTTCAT---TTTT--ATTTT-G-TATGAAAAC-G-A-TCAATTTTC--AATA-CA-GATATA-----TTTTTAT-TT-GTAAGTT--A-TATC-AA---AACTTTAATATGTTTAGTA-GT---GT-C--TG-TCTATTATAT-CTA----CAAA---TC-A-AA-AT-AG-CATT--ATC-T--T-AAAAC-TT-AAATAAC--AT-AAA-TAT--TATTAAAATT-------TGG-TTATA--T----AAGCATTTCAC-CGCTATTATTAG-TTTGACTGTGAAAGT---TTGCAAATGCGGGGCATACAAGT-GTTTCAAAT-CAA--TG-CAAT----CAATAG-AA--AATTT-C---AGTGTGATTCATAGAGG-TGA-TG--AAC-GC-A-TTGAGTG-GA-TA-TAC--TGT-CAT-A--GC-ATAG--AG--GAACA-GCGGATTATGCAAA
gi|7 : -------TTT-------------TTCTTTCATAATA--TTGTGAA-GTCA-TTCTC----G-AG---ATGAA-TG---ATAA---A--CCCT-AT-GTATATGCATT---T-----CC-TGACACA-A-AAAGAGCT-ATCG-TCCGTGTGG-AATGTAGAA-TGTTAATTT-----CT-AACT-TGCATTTCAT-ATTTTC--ATTTC-GGTAT--AACC-A-T-TCA-TTTT---AATA-CAAGACATG-----TTTGCAT-TG-GTA-GTTGAA-T-TT-AA---AA-------ATCTTTAATT-GG---GT-C--GGATTTGGCACAAACTA----CAGAA--TC-A-AA-AT-AG-CATTTGATC-T--T-ACAAC-G-------------------CT--TTTCAAAATG-------TCA-T-ATA--T----AAGCATTTTCC-CGCTATCAGGAG-TTTGACTGTG-AAGT---TTTCAAGAGCAGGGCATGGAAAT-G-CTCTAAG-TAT-TTG-CAAT----C-TTAGTTA--T---T-CA--AGTGTGGTTCATAGTTG-T-A-TG--AAC-GCAA-TTG------------------------------ATAG--AG--GAACA-GTGGG-TATGCAAt
gi|8 : gac-----TTTTTAT-TTTGTAAGTTAGA-T-TC-AACAAAA-------ATCTTAAATG-AG---GTTC--AGATTTGGCACAAACTA----C-AAA--TC-ACAACAT-AG-CATTTGATC-TTAT-AAAACGAT-TAATAAC--AT--AAATAT--TATT-AAATT-------TGG-T-ATA--TA---AAGCATTTCA--CGC-ACTATCAGTTTTGACTGTG-AAG----TTGCAAAAGT-GGACAT-CAGTT-G-TTACAAT-CAAGTTGACATT----C-ATAG-AATTT---T-CA--AGTGTGA-TCATAGAGG-T-A-TG--AAT-GC-A-TTGA-TA-GATTA-TGTAAAGT-CAT-AGCGC-ATAG--AG--GAACAGGTGG--TATGCAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACAAATTGCTCTGCTGGCATATTTCCTATGATGCGCTAACGGCGTCATAGGAATATGCCAGAGAGCAATTTGCATTTCATAAACGCCATGATTCACTGAAAAACGTTATTCATTTCTATATGCA
Unaligned ( gi|12 ): TTATCAGTTAACTACATCATATCTGGCAAGGTCCCTTCCGGGTAGTCCGCACTATAAATTAAGTCCTAGTCAA
Unaligned ( gi|16 ): TTTCAAAAGCTTTATTTATTTTTTTAATTAAAATTCTTACACTTCAATGCA