lowQualScore : 111 1111 1111111 111 2222222222222 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 11111 333333333 111111 222222 3333 11 11111 111111 111111 55 1111
lowQualScore : 1 000 5 5555 8888888 5 11 000 5 5 1111111111111 0 5 55 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 66 888 55 5 5 5 11 44444 77 444444444 666666 222222 2 11 0000 2 6 22 66666 0 666666 999999 3 4 44 11 3 55 0000 5 5 66 888
lowQualScore : . ... . .... ....... . .. ... . . ............. . . .. ....................................................................................... .. ... .. . . . .. ..... .. ......... ...... ...... . .. .... . . .. ..... . ...... ...... . . .. .. . .. .... . . .. ...
lowQualScore : 7 000 7 0000 6666666 7 66 000 7 7 7777777777777 1 0 88 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 99 888 22 0 0 0 00 33333 99 000000000 444444 111111 8 44 0000 5 7 77 77777 1 444444 222222 7 3 77 44 9 00 6666 0 0 99 888
consensus : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------A-CAAGGT---TTA-TTG-TTAACTT----T--TATTTTCAAGATTTATATTGAA--TTTA---TT-AA-TTTAGTAATATCAAAGTTTAAAGCTTT-A----T--TTATTAATCAAAATAGAACA-TCAAAATAGAACG--TT---GAT-GTTTGTCAGGTCCA-TAA-T-TAAC-TTTG-----AC--TAGT--------TCTC------ATGAAGGCC------AGAGGAGAAGCTTAAAAAGTTAATGTTTGTCAGGTCCATAAT-TAAC-TTTG-----ACTAGTTCTC------ATGAAGGCCAGA------GGAGAAGCTTAAAAAGTTACTTGTCCGATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-TCACAA-AA--TG---AACTGGACA
Reference ( gi|1 ) : TATTTTACTTGTCCGACT---C-TGAAT--GAAA-------A-CAAGGT---TTA-TTG-TAAACTT----T--TATTTTCCAGATTTGTATTGAA--TTTATGATT-AA-TTTAGTAATATCACAATTTAAAGGTTT-A----T--TTGTTAATCAAAATAGAACAATCAAAATAGAACG--TT---GAT-GTTTGTCAGGTCCA-TAA-T-TAAC-CTTG-----AC--TAGT--------ACTC------ATGAAGGCC------AGGGGAGAAGCTTAAAAAGTTA---CTTGTCAGGTCCATAAT-TAAC-CTTG-----ACTAGTTCTC------ATGAAGGCCAGA------GGAGAAGCTTAAAAGGTTACTTGTCCTATCGGACAAGTACATTTAGAGATTGACTAATGTC----CGA-TCACAA-AA--TG---AACTGGACA
gi|4 : TATTTTACTTGTCCGACT---C-TGAAT--AAAA-------A-CAAGGT---TTA-TTG-TTAACTT----T--TATTTTCAAGATTTATGTTG--------------AA-TTTAGTAATATCAAGATTTAAAGCTTT-A----T--TCATTAAT----------TAATCAAAATAGAATG--TT---GAT-GTTTGTCAGGTCCA-TAA-T-TAAC-TTTG-----AC--TAGT--------TCTC------ATGAAGGCCAGATCTAGAGGAGAAGCTTAAAAAGTTA---
gi|8 : TATTTTATTTGTCCGACT---C-TGAAA--AAAA-------AACAAGGT---TTC-TTG-TTAATTT----T--CATTTTCAAGATTTATATT-------------T-AA-TTTAGTAATATCAAAATTTAAAGCTTT-A----C--CTATTAATCAAAATAGAA-A-------------G--TT---GAT-GTTTGTCAAGTCCA-TAA-T-TAAC-TTTG-----AC--TATT--------TCTC------AAGAAGGCC------AGAGGAgagattgacttgttcgatcacaaaatggactggacaggcctagggacaatcggacaaacgttaatgtt
gi|3 : TATTTTACTTGTCCGAAT---C-TGAACAAAAAA-------A-CGAAGT---TTA-TTG-TTAAC-T----T--TATTTTGAAG------ACTGAA-----ATAGTT-A----TAG--------------AAA----T-A----T--TTATTAGACAAAACAGAACATT---GATGTAAAG--CC---AAA-CTTTATCTGGTCCG-TAA-T-TAAC-TTTAGTTATAA--TAGT--------TTTCATAAGTATGAAGACC------AG
gi|9 : acagggctcaacattaacttaaatttccacttggacaagctgctaccaannnnnnnnnnnnnnnnnnnnnnnnncatgttacttatctgtatcactgtatgtaTATTTTACTTGTCCAACT---C-TAAAC--AAAAACTGGACA-CAAAGT---GTA-TTG-TTAA-TT----T--TATTTTCAAGATTTATATTAA
gi|5 : ggctcaatattagcttaaattttcacttctccaacggacaagctgtcaccaaatgttatacttgtccgaatgtaTATTTTA-TTGTCCAACT---CCTGAAC--AAAA-------A-C--TGTACATCA-TTAACAAGTTTATAAT--TATTTTCAAGATT-ATATT-------------C-AA-GTTAGTAATATCAAAGTTTCAGGGTTTTA----T--TTATTA---------------TCAAAATAGAACG--TT---G---GTTGGTAAGGTCAT-TAATT-TAAC-
gi|6 : ctgtcaaccagggctctcaacttaattttcacttgtcaaagcggacaagttgcacaaatgttattgtctcgaatgtaTTTTACTTGTCCAGCT---G-T---T--AAAA-------A-CAAGGT---TTA-TTG-T-------------TA--------ATTT-TATT-----TTCAAGACT-AA-TATG----CATCAAAGTTTATAGCCTT-A----TA-TTATTAA-----------------------AACG--TT---GAT-GTTTATCAGGTCCA-TAA-T-TAAC-TTTG-----AC--TAGT--------TCTC------ATGAAGGCT------AGAGAAGAAGCatctgaata
gi|2 : ggggctcaacattaacttaaatttccacttgtccattggacaaactgccaccaaatgttactTTTTATTTGTCAGACTTCTC-TGAAT--AAAA-------A-CA-GGT---TTAATTG-TTAACTC----TAATACTT-----ATTT--ATTCAAGATTTATACTTGAA-TTTAGTAATATCAAAATTATAAGCTTT-A----TATCTATTAATTAAAATAGAATTATT-AGATGG---G--TTTTGGAG-CTTCG--AGGTCCATTAA-T-CAA--TTTG-----ACCTTAGTTTCTCTTAATTT------ATG-AGGCCG-----AAGGAAGAA
gi|10 : aagggctcaaacattactttaattttcactagttgtccgataacggatatacgatcactttacgtttatgtccgaatgcatttcatT----T--TATTTTCAAGATATATATCAAA--TTTA----------------GTATCAAAGTTGAAAGCTTT-AATTAT--TTATCAATCAAAATAGAAC
gi|11 : A--TTTAT-ATC-AAATTTAGTAATATCAAAGTTGAAAGCTTT-A----T--TTATTAATCAA--------------AGTACAACG--TT---GAT-GTTTGTCAATGCCA-TAA-T-TTAC-TTTG-----AC--TAGT--------TCTC------ATGAAGGCC------AGgtttgactaattcccatgaaggccagaggagaagcttagaaagttacttgtcctatcggacaagtgaatttagag
gi|10 : ttgcttgcaagATCAAAGTTGAAAGCTTT---AATTATTTATCAA--TCA-AAA-TAGAACGTTTG-----AC--TAAT--------TCCC------ATGAAGGCC------AGAGGAGAAGCTTAGAAAGTTA---CTTGTCaa
gi|10 : tttattttcaagatatatatcaaatttagtAAGCTTTAA---TTA---TTTATCAA--TCAAAATAGAACGTTTG-----ACTAATTCCC------ATGAAGGCCAGA------GGAGAAGCTTAGAAAGTTACTTGTCCTATCGGACAAGTGAATTTAGAGctatcggacaagtgaatttagag
gi|6 : tttattttcaagatatatatcaaatttagtatcaaagttgaTTAAAACGTTGATGTTTATCAGGTCCATAAT-TAAC-TTTG-----ACTAGTTCTC------ATGAAGGCTAGA------GAAGAAGC
gi|8 : ggggctcaacattaacttaaatttccacttgtccattggacaaactgccaccaaatgttactttttacttgtccagctgttaaaaacaaggtttattgttaattttattttcaagactaatatgcatcaaagtttatagccttatattaTAGAAAGTTGATGTTTGTCAAGTCCATAAT-TAAC-TTTG-----ACTATTTCTC------AAGAAGGCCAGA------GGA
gi|4 : tattttatttgtccgactctgaaaaaaaaacaaggtttcttgttaattttcattttcaagatttatatttaatttagtaatatcaaaatttaaagctttacctattaatcaaaaTTGTCAGGTCCATAAT-TAAC-TTTG-----ACTAGTTCTC------ATGAAGGCCAGATCTAGAGGAGAAGCTTAAAAAG--------------------------TTAGAGATTGACT--TGTT----CGA-TCACAA-AA--TG---GACTGGACA
gi|11 : tattttacttgtccgactctgaataaaaacaaggtttattgttaacttttattttcaagatttatgttgaatttagtaatatcaagatttaaagctttattcattaattaatcaaaatagaatgttgatgtTTGTCAATGCCATAAT-TTAC-TTTG-----ACTAGTTCTC------ATGAAGGCCAGA------ggcctagggacaatcggacaaacgttaatgtt
gi|3 : ttgcttgcaagatttatatcaaatttagtaatatcaaagttgaaagctttatttattaatcaaagtacaacgttgatgtTTATCTGGTCCGTAAT-TAAC-TTTAGTTATAATAGTTTTCATAAGTATGAAGACCAGa
gi|7 : acagggctcaacattaacttaaatttccacttggacaagctgctaccaannnnnnnnnnnnnnnnnnnnnnnnncatgttacttatctgtatcactgtatgtatattttacttgtccgaatctgaacaaaaaaacgaagtttattgttaactttattttgaagactgaaatagttatagaaatatttattagacaaaacagaacattgatgtaaagccaaactCTAGTTT--------ATGAATAATA-A------GTACAAGCTAGAAAGTTGACTTGTCTGATCGGATAAGTGCATTTAGAGATCGACT--TGTC----TGA-TCAC---AT--TG---AACTGGAC
gi|13 : tatatcatggttttggtgattatagttagtagcttcgtacttgaaattgaaaagtgctgcagAAAAGTTACTTGTCCTA---GAC--GTGCATTTAGAGACTGACT--TGTC----CGA-TCACAA-AA--TG---AACTGGACAcggacaatcggacaagttgtaatgttgagc
gi|17 : AAAGTTA-TTGTCCTA--AGACC-GTGCATTTAGAGACTGACT--TGTC----CGATTCACAACAA--TAAATAACTGGACAgggacaattggacaaacgttaatgttgaggcct
gi|14 : AAGTTACTCGTCCTATCGGAAAAGTGCATTTAGAGATTGACT--TGTC----CGA-TCACAA-AA--TG---AACTGGACAgggacaaatt
gi|12 : AAGTTACTTGTCCGATCGGACAAGTACAAAAAGAGATTGACT--TGTC----CGA-TTGCAA-AT--TG---AACTGGACAgggacaatcggacaaacgttaatgttgagg
gi|12 : TACTTGTCCGATCGGACAAGTAcggacaatcagacaagtgttaatgttgagccct
gi|15 : aagtACTTGTCTGATTGGACAAGTGCATTTACAGATTGGCT--TGTC----CAA-TAAAAA-AAAATG---AACTGGACAcaaaaagagattgacttgtccgattgcaaattgaactggacacggacaatcagacaagtgttaatgttgagccct
gi|16 : GGACAAGTGCATTTAGAGATTGACT--TGTCAAATTGA-TCACAA-AA--TG---AACTGGACAcaaacaatcaatgttgagcac
Alignments
lowQualScore : 1111111 111111111111111111 999999999999999999 666666666666666666666666 11111 3333333 111111 11 3333 1 1 222222
lowQualScore : 0 888 5 888 6666666 5 0 5 555555555555555555 55 0 4 333333333333333333 1 66 66 4 2 222222222222222222222222 777 1 4 4 4 11111 66 5 0000000 444444 6 11 5555 6 3 3 7 888888 2 3 4 6 44 11 66 9999 4 66 4 777
lowQualScore : . ... . ... ....... . . . .................. .. . . .................. . .. .. . . ........................ ... . . . . ..... .. . ....... ...... . .. .... . . . . ...... . . . . .. .. .. .... . .. . ...
lowQualScore : 2 888 0 000 2222222 0 1 0 999999999999999999 55 9 0 333333333333333333 8 33 11 4 0 888888888888888888888888 888 9 4 4 4 11111 11 0 6666666 444444 7 00 0000 7 3 3 0 888888 5 2 4 7 77 44 11 4444 4 11 4 888
consensus : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------A-CAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TTGAATTTA---------TAGTAATATCAAAGTTT-AAAGCTT--TAT-TTATTAATCAAAATAGAA--A-TCAAAATAGAACGTT---GATGTTTGTCAGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAG--TTAAT-GCTTGTCAGGTCCATAAT-TAAC-TTTGACTAGTTCTCATGAAGGCC------AGAGGAGAAGCTTAAAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
Reference ( family-3119 ) : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------A-CAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TTGAATTTAT---TAATTTAGTAATATCAAAGTTT-AAAGCTT--TAT-TTATTAATCAAAATAGAA-CA-TCAAAATAGAACGTT---GATGTTTGTCAGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAAAAAG--TTAAT-GTTTGTCAGGTCCATAAT-TAAC-TTTGACTAGTTCTCATGAAGGCC------AGAGGAGAAGCTTAAAAAGTT-ACTTGTCCGATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|1 : TATTTTACTTGTCCGACT---C-TGAAT--GAAA-------A-CAAGGTTTA-TTGTAAAC----TT----T------TATTT--TCCAGATTTGTA-TTGAATTTATGATTAATTTAGTAATATCACAATTT-AAAGGTT--TAT-TTGTTAATCAAAATAGAA-CAATCAAAATAGAACGTT---GATGTTTGTCAGGTCCA-TAA-TTAAC-CTTG-----AC--TAG-TACTC-------ATGAAGGCC------AGGGG-AGAAGCTTAAAAAG--TTA----CTTGTCAGGTCCATAAT-TAAC-CTTGACTAGTTCTCATGAAGGCC------AGAGGAGAAGCTTAAAAGGTT-ACTTGTCCTATCGGACAAGTACATTTAGAGATTGACTAATGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|10 : T----T------TATTT--TCAAGATATATA-TCAAATTTA--------------GTATCAAAGTTG-AAAGCTT--TAA-TTATTTATCA----------A-TCAAAATAGAACGT--------------------------TTGAC-T-------------AA-TTCCC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAG--TTA----CTTGTC
gi|10 : AAAGCTTTAATTATTTATCAA--TCAAAATAGAACGTTTGACTAATTCCCATGAAGGCC------AGAGGAGAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGAATTTAGAGctatcggacaagtgaatttagag
gi|11 : tttattttcaagatatatatcaaatttagtatcaaagttg----T------TGCTT--GCAAGATTTATA-TCAAATTTA-----------GTAATATCAAAGTTG-AAAGCTT--TAT-TTATTAATCAAAGTA--------CAA-------CGTT---GATGTTTGTCAATGCCA-TAA-TTTAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGA
gi|12 : AAGTT-ACTTGTCCGATCGGACAAGTACAAAAAGAGATTGACT--TGTC----CGA-T--TGCAA-ATTG---AACTGGACAa
gi|13 : AAAAGTT-ACTTGTCCTA---GAC--GTGCATTTAGAGACTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAcggacaatcagacaagtgttaatgttgagccct
gi|14 : AAGTT-ACTCGTCCTATCGGAAAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAgggacaattggacaaacgttaatgttgaggcct
gi|15 : -ACTTGTCTGATTGGACAAGTGCATTTACAGATTGGCT--TGTC----CAA-TAAAAAAA-AATG---AACTGGACAgggacaatcggacaaacgttaatgttgagg
gi|16 : GGACAAGTGCATTTAGAGATTGACT--TGTCAAATTGA-T--CACAA-AATG---AACTGGACAcaaacaatcaatgttgagcac
gi|17 : aAAAGTT-A-TTGTCCTA--AGACC-GTGCATTTAGAGACTGACT--TGTC----CGATT--CACAACAATAAATAACTGGACAcggacaaatgttaaataatgttgggccct
gi|2 : TTTTATTTGTCAGACTTCTC-TGAAT--AAAA-------A-CA-GGTTTAATTGTTAAC----TC----TAATACTTATTTATTCAAGATTTATACTTGAATTTA-----------GTAATATCAAAATTA-TAAGCTTTATAT-CTATTAATTAAAATAGAATTA-TT-AGATGG---GTTTTGGAGCTTCG--AGGTCCATTAA-TCAA--TTTG-----ACCTTAGTTTCTCTTAATTTATG-AGGCC------GAAGGAAGAAgggacaaatt
gi|3 : aagggctcaaacattactttaattttcactagttgtccgataacggatatacgatcactttacgtttatgtccgaatgcatttcatTATTTTACTTGTCCGAAT---C-TGAACAAAAAA-------A-CGAAGTTTA-TTGTTAAC-----T----T------TATTT--TGAAG------A-CTGAA---A---------TAGT--TAT---AG----AAA------TAT-TTATTAGACAAAACAGAA-CA-TTGATGTAAA--GCC---AAACTTTATCTGGTCCG-TAA-TTAAC-TTTAGTTATAA--TAG-TTTTCATAAGT-ATGAAGACC------AG
gi|4 : acagggctcaacattaacttaaatttccacttggacaagctgctaccaannnnnnnnnnnnnnnnnnnnnnnnncatgttacttatctgtatcactgtatgtaTATTTTACTTGTCCGACT---C-TGAAT--AAAA-------A-CAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATG-TTGAATTTA-----------GTAATATCAAGATTT-AAAGCTT--TAT-TCATTAATTAA-----------TCAAAATAGAATGTT---GATGTTTGTCAGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCCAGATCTAGAGG-AGAAGCTTAAAAAG--TTA
gi|4 : TAGAATG--TTGAT-GTTTGTCAGGTCCATAAT-TAAC-TTTGACTAGTTCTCATGAAGGCCAGATCTAGAGGAGAAGCTTAAAAAG---------------------------TTAGAGATTGACT--TGTT----CGA-T--CACAA-AATG---GACTGGACAgagattgacttgttcgatcacaaaatggactggacaggcctagggacaatcggacaaacgttaatgtt
gi|5 : tattttacttgtccgactctgaataaaaacaaggtttattgttaacttttattttcaagatttatgttgaatttagtaatatcaagatttaaagctttattcattaattaatcaaaaTATTTTA-TTGTCCAACT---CCTGAAC--AAAA-------A-C--TGTACA-TCATTAACAAGTTTATAAT------TATTT--TCAAGATT-ATA-TT-----------CAAGTTAGTAATATCAAAGTTTCAGGGTTT--TAT-TTATT---------------A-TCAAAATAGAACGTT---G--GTTGGTAAGGTCAT-TAATTTAACATCTG-----AA--TAggcctagggacaatcggacaaacgttaatgtt
gi|6 : ctgtcaaccagggctctcaacttaattttcacttgtcaaagcggacaagttgcacaaatgttattgtctcgaatgtaTTTTACTTGTCCAGCT---G-T---T--AAAA-------A-CAAGGTTTA-TTGTTAA-----TT----T------TATTT--TCAAGACTAATA-T----------------------GCATCAAAGTTT-ATAGCCT--TATATTATTAA------------------------AACGTT---GATGTTTATCAGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCT------AGAGA-AGAAGC
gi|7 : ggggctcaacattaacttaaatttccacttgtccattggacaaactgccaccaaatgttactCTAGTTT--ATGAATAAT------A-AGTACAAGCT-AGAAAGTTGACTTGTCTGATCGGATAAGTGCATTTAGAGATCGACT--TGTC----TGA-T--CAC---ATTG---AACTGGAC
gi|8 : tatatcatggttttggtgattatagttagtagcttcgtacttgaaattgaaaagtgctgcagTATTTTATTTGTCCGACT---C-TGAAA--AAAA-------AACAAGGTTTC-TTGTTAAT----TT----T------CATTT--TCAAGATTTATA-TT-----------TAATTTAGTAATATCAAAATTT-AAAGCTT--TAC-CTATTAATCAAAATAGAA--A-------------GTT---GATGTTTGTCAAGTCCA-TAA-TTAAC-TTTG-----AC--TAT-TTCTC-------AAGAAGGCC------AGAGG-Acggacaatcggacaagttgtaatgttgagc
gi|9 : TATTTTACTTGTCCAACT---C-TAAAC--AAAAACTGGACA-CAAAGTGTA-TTGTTAA-----TT----T------TATTT--TCAAGATTTATA-TTAA
Alignments
lowQualScore : 2222222 111111111111111111 44444444444 5555555555555 11111 11111 3333333 111111 11 777777777 1111 22 1 1 1111
lowQualScore : 0 888 5 888 1111111 0 5 555555555555555555 55 0 4 2 1 1 55555555555 1 66 4 2 9999999999999 55 0 66 4 777 11111 4 4 4 4 11111 66 5 0000000 444444 6 3 33 000000000 9999 8 00 3 2 6 7 5 3 66 0000 5 66 5 888
lowQualScore : . ... . ... ....... . . .................. .. . . . . . ........... . .. . . ............. .. . .. . ... ..... . . . . ..... .. . ....... ...... . . .. ......... .... . .. . . . . . . .. .... . .. . ...
lowQualScore : 2 888 0 000 2222222 1 0 999999999999999999 55 9 0 3 8 8 77777777777 8 33 4 0 3333333333333 33 1 22 4 888 11111 4 4 4 4 11111 11 0 6666666 444444 7 2 88 000000000 7777 3 33 3 3 7 3 0 2 99 6666 0 99 0 888
consensus : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TTGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAAA-TA--A--ATCAAAATAGAA-CGTT-GATG---TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAG--TTAG----T-G-CTTGTCAGGTC-CAAAAT-GAAC-TTTGACTAGTTCCCATGAAGGCCAGAGGAGAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
Reference ( family-3119 ) : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TTGAATTTAT---------AGTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAAAATAGAA--ATCAAAATAGAA-CGTT-GATG---TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAG--TTAA----T-G-CTTGTCAGGTC-CATAAT-TAAC-TTTGACTAGTTCTCATGAAGGCCAGAGGAGAAGCTTAAAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|1 : TATTTTACTTGTCCGACT---C-TGAAT--GAAA-------ACAAGGTTTA-TTGTAAAC----TT----T------TATTT--TCCAGATTTGTA-TTGAATTTATGATTAATTTAGTAATATCACAATTT-AAAGGTTTAT-TTGTTAATCAAAATAGAACAATCAAAATAGAA-CGTT-GATG---TTTG-----TC-AGGTCCA-TAA-TTAAC-CTTG-----AC--TAG-TACTC-------ATGAAGGCC------AGGGG-AGAAGCTTAAAAAG--TTA---------CTTGTCAGGTC-CATAAT-TAAC-CTTGACTAGTTCTCATGAAGGCCAGAGGAGAAGCTTAAAAGGTT-ACTTGTCCTATCGGACAAGTACATTTAGAGATTGACTAATGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|10 : T----T------TATTT--TCAAGATATATA-TCAAATTTA--------------GTATCAAAGTTG-AAAGCTTTAA-TTATTTATC--------A--ATCAAAATAGAA-CGT---------------------------------TTGAC-T-------------AA-TTCCC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAG--TTA---------CTTGTC
gi|10 : AAGTT--GAAAGCTTTAA----TTA-TTTATCAA--T-CAAAATAGAACGTTTGACTAATTCCCATGAAGGCCAGAGGAGAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGAATTTAGAGctatcggacaagtgaatttagag
gi|11 : tttattttcaagatatatatcaaatttagtatca----T------TGCTT--GCAAGATTTATA-TCAAATTTA-----------GTAATATCAAAGTTG-AAAGCTTTAT-TTATTAATCAAAGTA-------CAA--------CGTT-GATG---TTTG-----TC-AATGCCA-TAA-TTTAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGA
gi|12 : AAGTT-ACTTGTCCGATCGGACAAGTACAAAAAGAGATTGACT--TGTC----CGA-T--TGCAA-ATTG---AACTGGACAa
gi|13 : AAAAGTT-ACTTGTCCTA---GAC--GTGCATTTAGAGACTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAcggacaatcagacaagtgttaatgttgagccct
gi|14 : AAGTT-ACTCGTCCTATCGGAAAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAgggacaattggacaaacgttaatgttgaggcct
gi|15 : -ACTTGTCTGATTGGACAAGTGCATTTACAGATTGGCT--TGTC----CAA-TAAAAAAA-AATG---AACTGGACAgggacaatcggacaaacgttaatgttgagg
gi|16 : GGACAAGTGCATTTAGAGATTGACT--TGTCAAATTGA-T--CACAA-AATG---AACTGGACAcaaacaatcaatgttgagcac
gi|17 : aAAAGTT-A-TTGTCCTA--AGACC-GTGCATTTAGAGACTGACT--TGTC----CGATT--CACAACAATAAATAACTGGACAcggacaaatgttaaataatgttgggccct
gi|2 : TTTTATTTGTCAGACTTCTC-TGAAT--AAAA-------ACA-GGTTTAATTGTTAAC----TC----TAATACTTATTTATTCAAGATTTATACTTGAATTTA-----------GTAATATCAAAATTA-TAAGCTTTAT-------ATC----TATTA--ATTAAAATAGAATTATTAGATGGGTTTTGGAGCTTCGAGGTCCATTAA-TCAA--TTTG-----ACCTTAGTTTCTCTTAATTTATG-AGGCC------GAAGGAAGAAgggacaaatt
gi|3 : aagggctcaaacattactttaattttcactagttgtccgataacggatatacgatcactttacgtttatgtccgaatgcatttcatTATTTTACTTGTCCGAAT---C-TGAACAAAAAA-------ACGAAGTTTA-TTGTTAAC-----T----T------TATTT--TGAAG------A-CTGAA---AT---------AGT--TAT---AG----AAA----TAT-TTATTAGACAAAACAGAAC-ATTGATGTAAA---GCC-AAAC---TTTA-----TC-TGGTCCG-TAA-TTAAC-TTTAGTTATAA--TAG-TTTTCATAAGT-ATGAAGACC------AG
gi|4 : acagggctcaacattaacttaaatttccacttggacaagctgctaccaannnnnnnnnnnnnnnnnnnnnnnnncatgttacttatctgtatcactgtatgtaTATTTTACTTGTCCGACT---C-TGAAT--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATG-TTGAATTTA-----------GTAATATCAAGATTT-AAAGCTTTAT-TCATTAATTAA----------TCAAAATAGAA-TGTT-GATG---TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCCAGATCTAGAGG-AGAAGCTTAAAAAG--TTAGAGATT-GACTTGTTCGATCACAAAAT-GGAC-T
gi|5 : TATTTTA-TTGTCCAACT---CCTGAAC--AAAA-------AC--TGTACA-TCATTAACAAGTTTATAAT------TATTT--TCAAGATT-ATA-TTCAAGTTA-----------GTAATATCAAAGTTTCAGGGTTTTAT-TTATTA---------------TCAAAATAGAA-CGTT-G--G---TTGG-----TA-AGGTCAT-TAATTTAACATCTG-----AA--TAggacaggcctagggacaatcggacaaacgttaatgtt
gi|6 : ctgtcaaccagggctctcaacttaattttcacttgtcaaagcggacaagttgcacaaatgttattgtctcgaatgtaTTTTACTTGTCCAGCT---G-T---T--AAAA-------ACAAGGTTTA-TTGTTAA-----TT----T------TATTT--TCAAGACTAATA-T----------------------GCATCAAAGTTT-ATAGCCTTATATTATTAA-----------------------AA-CGTT-GATG---TTTA-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCT------AGAGA-AGAAGC
gi|7 : ggggctcaacattaacttaaatttccacttgtccattggacaaactgccaccaaatgttactCTAGTTT--ATGAATAATA-AGTACAAGCT-AGAAAGTTGACTTGTCTGATCGGATAAGTGCATTTAGAGATCGACT--TGTC----TGA-T--CAC---ATTG---AACTGGAC
gi|8 : tatatcatggttttggtgattatagttagtagcttcgtacttgaaattgaaaagtgctgcagTATTTTATTTGTCCGACT---C-TGAAA--AAAAA------ACAAGGTTTC-TTGTTAAT----TT----T------CATTT--TCAAGATTTATA-TTTAATT--T---------AGTAATATCAAAATTT-AAAGCTTTAC-CTATTAATCAAAATAGAA--A-------------GTT-GATG---TTTG-----TC-AAGTCCA-TAA-TTAAC-TTTG-----AC--TAT-TTCTC-------AAGAAGGCC------AGAGG-Acggacaatcggacaagttgtaatgttgagc
gi|9 : TATTTTACTTGTCCAACT---C-TAAAC--AAAAACTGGACACAAAGTGTA-TTGTTAA-----TT----T------TATTT--TCAAGATTTATA-TTAA
Alignments
lowQualScore : 2222222 111111111111111111 22222222222 999999999999999 22222222222 11111 11111 3333333 111111 11 555555555 1111 11111 1 1 1111
lowQualScore : 0 888 5 888 1111111 0 5 555555555555555555 55 0 4 66 1 11111111111 0 66 4 111111111111111 4 4 88888888888 11111 4 4 4 4 11111 66 5 0000000 444444 6 0 11 333333333 0 5555 44444 0 2 6 7 5 3 66 0000 5 66 5 888
lowQualScore : . ... . ... ....... . . .................. .. . . .. . ........... . .. . ............... . . ........... ..... . . . . ..... .. . ....... ...... . . .. ......... . .... ..... . . . . . . .. .... . .. . ...
lowQualScore : 2 888 0 000 2222222 1 0 999999999999999999 55 9 0 11 8 11111111111 8 33 4 111111111111111 4 4 99999999999 11111 4 4 4 4 11111 11 0 6666666 444444 7 8 00 222222222 8 5555 22222 0 0 7 3 0 2 99 6666 0 99 0 888
consensus : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATC----------AATCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAG--TTAG----T-A-CTTGTCAGATC-CAAAA-T-GAAC-TTCGACTAGTTCCCATGAAGGCCAGAGGAGAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
Reference ( family-3119 ) : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TTGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAAA-TA----AATCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAG--TTAG----T-G-CTTGTCAGGTC-CAAAA-T-GAAC-TTTGACTAGTTCCCATGAAGGCCAGAGGAGAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|1 : TATTTTACTTGTCCGACT---C-TGAAT--GAAA-------ACAAGGTTTA-TTGTAAAC----TT----T------TATTT--TCCAGATTTGTA-TTGAATTTATGATTAATTTAGTAATATCACAATTT-AAAGGTTTAT-TTGTTAATCAAAATAGAACAATCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-CTTG-----AC--TAG-TACTC-------ATGAAGGCC------AGGGG-AGAAGCTTAAAAAG--TTA---------CTTGTCAGGTC-CATAA-T-TAAC-CTTGACTAGTTCTCATGAAGGCCAGAGGAGAAGCTTAAAAGGTT-ACTTGTCCTATCGGACAAGTACATTTAGAGATTGACTAATGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|10 : T----T------TATTT--TCAAGATATATA-TCAAATTTA-----------GTA---TCAAAGTTG-AAAGCTTTAA-TTATTTATC----------AATCAAAATAGAA-CGT-----------------------------------------TTGAC-T-------------AA-TTCCC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAG--TTA---------CTTGTC
gi|10 : AAGTT--GAAAGCTTTAA----TTA-TTTATCAA--T-CAAAA-TAGAACGTTTGACTAATTCCCATGAAGGCCAGAGGAGAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGAATTTAGAGctatcggacaagtgaatttagag
gi|11 : tttattttcaagatatatatcaaatttagtatca----T------TGCTT--GCAAGATTTATA-TCAAATTTA-----------GTAATATCAAAGTTG-AAAGCTTTAT-TTATTAATCAAA--------------GTACAA-CGTT-GATG-----------TTTG-----TC-AATGCCA-TAA-TTTAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGA
gi|12 : AAGTT-ACTTGTCCGATCGGACAAGTACAAAAAGAGATTGACT--TGTC----CGA-T--TGCAA-ATTG---AACTGGACAa
gi|13 : AAAGTT-ACTTGTCCTA---GAC--GTGCATTTAGAGACTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAcggacaatcagacaagtgttaatgttgagccct
gi|14 : aAAGTT-ACTCGTCCTATCGGAAAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAgggacaattggacaaacgttaatgttgaggcct
gi|15 : -ACTTGTCTGATTGGACAAGTGCATTTACAGATTGGCT--TGTC----CAA-TAAAAAAA-AATG---AACTGGACAgggacaatcggacaaacgttaatgttgagg
gi|16 : GGACAAGTGCATTTAGAGATTGACT--TGTCAAATTGA-T--CACAA-AATG---AACTGGACAcaaacaatcaatgttgagcac
gi|17 : aAAAGTT-A-TTGTCCTA--AGACC-GTGCATTTAGAGACTGACT--TGTC----CGATT--CACAACAATAAATAACTGGACAcggacaaatgttaaataatgttgggccct
gi|2 : TTTTATTTGTCAGACTTCTC-TGAAT--AAAA-------ACA-GGTTTAATTGTTAAC----TC----TAATACTTATTTATTCAAGATTTATACTTGAATTTA-----------GTAATATCAAAATTA-TAAGCTTTAT-------ATC-TA-TT----AATTAAAATAGAATTATTAGATGGGT--------TTTGGAGCTTCGAGGTCCATTAA-TCAA--TTTG-----ACCTTAGTTTCTCTTAATTTATG-AGGCC------GAAGGAAGAAgggacaaatt
gi|3 : aagggctcaaacattactttaattttcactagttgtccgataacggatatacgatcactttacgtttatgtccgaatgcatttcatTATTTTACTTGTCCGAAT---C-TGAACAAAAAA-------ACGAAGTTTA-TTGTTAAC-----T----T------TATTT--TGAAGACTGA------AA--TA-----------GT--TAT---AG----AAA----TAT-TTATTAG--A------------CAAAACAGAA-CATT-GATGTAAAGCCAAACTTTA-----TC-TGGTCCG-TAA-TTAAC-TTTAGTTATAA--TAG-TTTTCATAAGT-ATGAAGACC------AG
gi|4 : acagggctcaacattaacttaaatttccacttggacaagctgctaccaannnnnnnnnnnnnnnnnnnnnnnnncatgttacttatctgtatcactgtatgtaTATTTTACTTGTCCGACT---C-TGAAT--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATG-TTGAATTTA-----------GTAATATCAAGATTT-AAAGCTTTAT-TCATTAATT----------AATCAAAATAGAA-TGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCCAGATCTAGAGG-AGAAGCTTAAAAAG--TTAGAGATT-GACTTGTTCGATCACAAAA-T-GGAC-T
gi|5 : TATTTTA-TTGTCCAACT---CCTGAAC--AAAA-------AC--TGTACA-TCATTAACAAGTTTATAAT------TATTT--TCAAGATT-ATA-TTCAAGTTA-----------GTAATATCAAAGTTTCAGGGTTTTAT-TTATT---------------ATCAAAATAGAA-CGTT-G--G-----------TTGG-----TA-AGGTCAT-TAATTTAACATCTG-----AA--TAggacaggcctagggacaatcggacaaacgttaatgtt
gi|6 : ctgtcaaccagggctctcaacttaattttcacttgtcaaagcggacaagttgcacaaatgttattgtctcgaatgtaTTTTACTTGTCCAGCT---G-T---T--AAAA-------ACAAGGTTTA-TTGTTAA-----TT----T------TATTT--TCAAGACTAATA-T----------------------GCATCAAAGTTT-ATAGCCTTATATTATTAA-----------------------AA-CGTT-GATG-----------TTTA-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCT------AGAGA-AGAAGC
gi|7 : ggggctcaacattaacttaaatttccacttgtccattggacaaactgccaccaaatgttactTTAGTAGC--TTCG----T-A-CTTG--AAATT-GAAAAGT-G--C-TGCAGCTAGTTT--ATGAATAATA-AGTACAAGCT-AGAAAGTTGACTTGTCTGATCGGATAAGTGCATTTAGAGATCGACT--TGTC----TGA-T--CAC---ATTG---AACTGGAC
gi|8 : tatatcatggttttggtgattatagTATTTTATTTGTCCGACT---C-TGAAA--AAAAA------ACAAGGTTTC-TTGTTAAT----TT----T------CATTT--TCAAGATTTATA-TTTAATTTA-----------GTAATATCAAAATTT-AAAGCTTTAC-CTATT--------------AATCAAAATAGAA-AGTT-GATG-----------TTTG-----TC-AAGTCCA-TAA-TTAAC-TTTG-----AC--TAT-TTCTC-------AAGAAGGCC------AGAGG-Acggacaatcggacaagttgtaatgttgagc
gi|9 : TATTTTACTTGTCCAACT---C-TAAAC--AAAAACTGGACACAAAGTGTA-TTGTTAA-----TT----T------TATTT--TCAAGATTTATA-TTAA
Alignments
lowQualScore : 2222222 111111111111111111 11 22222222222 33333333333333333 22222222222 11111 11111 3333333 111111 444444444 222 1 22 1 1 1111
lowQualScore : 0 888 5 888 1111111 0 5 555555555555555555 55 0 4 11 1 11111111111 0 66 55 44444444444444444 4 4 88888888888 11111 4 4 4 4 11111 66 5 0000000 444444 6 333333333 6666 777 3 0 7 3 55 333 5 2 2 5 5 1 5 00 66 0000 5 66 5 888
lowQualScore : . ... . ... ....... . . .................. .. . . .. . ........... . .. .. ................. . . ........... ..... . . . . ..... .. . ....... ...... . ......... .... ... . . . . .. ... . . . . . . . .. .. .... . .. . ...
lowQualScore : 2 888 0 000 2222222 1 0 999999999999999999 55 9 0 99 8 11111111111 8 33 44 22222222222222222 4 4 99999999999 11111 4 4 4 4 11111 11 0 6666666 444444 7 222222222 8888 555 2 0 0 7 55 000 0 5 5 5 7 3 0 22 99 6666 0 99 0 888
consensus : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAA----------TCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAGTTAG---T--ACTTGTCCGATCG--CAAAA-TGAACTTCGACTAGTTCTCATGAANGNCAGAGNANAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
Reference ( family-3119 ) : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAA----------TCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAGTTAG---T--ACTTGTCAGATC---CAAAA-TGAACTTCGACTAGTTCCCATGAAGGCCAGAGGAGAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|1 : TATTTTACTTGTCCGACT---C-TGAAT--GAAA-------ACAAGGTTTA-TTGTAAAC----TT----T------TATTT--TCCAGATTTGTA-TTGAATTTATGATTAATTTAGTAATATCACAATTT-AAAGGTTTAT-TTGTTAATCAAAATAGAACAATCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-CTTG-----AC--TAG-TACTC-------ATGAAGGCC------AGGGG-AGAAGCTTAAAAAGTTA--------CTTGTCAGGTC---CATAA-TTAACCTTGACTAGTTCTCATGAAGGCCAGAGGAGAAGCTTAAAAGGTT-ACTTGTCCTATCGGACAAGTACATTTAGAGATTGACTAATGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|10 : T----T------TATTT--TCAAGATATATA-TCAAATTTA-----------GTA---TCAAAGTTG-AAAGCTTTAA-TTATTTATCAA----------TCAAAATAGAA-CGT-----------------------------------------TTGAC-T-------------AA-TTCCC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAGT------T--ACTTGTCCTATCGGAC-AAG-TGAATTTAGA
gi|11 : ----T------TGCTT--GCAAGATTTATA-TCAAATTTA-----------GTAATATCAAAGTTG-AAAGCTTTAT-TTATTAATCAA--------------AGTACAA-CGTT-GATG-----------TTTG-----TC-AATGCCA-TAA-TTTAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAg
gi|12 : AAGTT-ACTTGTCCGATCGGACAAGTACAAAAAGAGATTGACT--TGTC----CGA-T--TGCAA-ATTG---AACTGGACAa
gi|13 : AAAGTT-ACTTGTCCTA---GAC--GTGCATTTAGAGACTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAcggacaatcagacaagtgttaatgttgagccct
gi|14 : aAAGTT-ACTCGTCCTATCGGAAAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAgggacaattggacaaacgttaatgttgaggcct
gi|15 : -ACTTGTCTGATTGGACAAGTGCATTTACAGATTGGCT--TGTC----CAA-TAAAAAAA-AATG---AACTGGACAgggacaatcggacaaacgttaatgttgagg
gi|16 : GGACAAGTGCATTTAGAGATTGACT--TGTCAAATTGA-T--CACAA-AATG---AACTGGACAcaaacaatcaatgttgagcac
gi|17 : aAAAGTT-A-TTGTCCTA--AGACC-GTGCATTTAGAGACTGACT--TGTC----CGATT--CACAACAATAAATAACTGGACAcggacaaatgttaaataatgttgggccct
gi|2 : TTTTATTTGTCAGACTTCTC-TGAAT--AAAA-------ACA-GGTTTAATTGTTAAC----TC----TAATACTTATTTATTCAAGATTTATACTTGAATTTA-----------GTAATATCAAAATTA-TAAGCTTTA---TATCTATTAA----------TTAAAATAGAATTATTAGATGGGT--------TTTGGAGCTTCGAGGTCCATTAA-TCAA--TTTG-----ACCTTAGTTTCTCTTAATTTATG-AGGCC------GAAGGAAGAAgggacaaatt
gi|3 : aagggctcaaacattactttaattttcactagttgtccgataacggatatacgatcactttacgtttatgtccgaatgcatttcatTATTTTACTTGTCCGAAT---C-TGAACAAAAAA-------ACGAAGTTTA-TTGTTAAC-----T----T------TATTT--TGAAGACTGA------AA--TA-----------GT--TAT---AG----AAA----TAT-TTATTAG--A------------CAAAACAGAA-CATT-GATGTAAAGCCAAACTTTA-----TC-TGGTCCG-TAA-TTAAC-TTTAGTTATAA--TAG-TTTTCATAAGT-ATGAAGACC------AG
gi|4 : acagggctcaacattaacttaaatttccacttggacaagctgctaccaannnnnnnnnnnnnnnnnnnnnnnnncatgttacttatctgtatcactgtatgtaTATTTTACTTGTCCGACT---C-TGAAT--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATG-TTGAATTTA-----------GTAATATCAAGATTT-AAAGCTTTAT-TCATTAATTAA----------TCAAAATAGAA-TGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCCAGATCTAGAGG-AGAAGCTTAAAAAGTTAGAGATTGACTTGTTCGATCA--CAAAA-TGGACT
gi|5 : TATTTTA-TTGTCCAACT---CCTGAAC--AAAA-------AC--TGTACA-TCATTAACAAGTTTATAAT------TATTT--TCAAGATT-ATA-TTCAAGTTA-----------GTAATATCAAAGTTTCAGGGTTTTAT-TTATT-----A----------TCAAAATAGAA-CGTT-G--G-----------TTGG-----TA-AGGTCAT-TAATTTAACATCTG-----AA--TAggacaggcctagggacaatcggacaaacgttaatgtt
gi|6 : ctgtcaaccagggctctcaacttaattttcacttgtcaaagcggacaagttgcacaaatgttattgtctcgaatgtaTTTTACTTGTCCAGCT---G-T---T--AAAA-------ACAAGGTTTA-TTGTTAA-----TT----T------TATTT--TCAAGACTAATA-T----------------------GCATCAAAGTTT-ATAGCCTTATATTATTAA-----------------------AA-CGTT-GATG-----------TTTA-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCT------AGAGA-AGAAGC
gi|7 : ggggctcaacattaacttaaatttccacttgtccattggacaaactgccaccaaatgttactTTAGTAGCTTCG---T--ACTTG--AAATT---GAAAAGTG--CTGCAGCTAGTTT--ATGAATAATA-AGTACAAGCT-AGAAAGTTGACTTGTCTGATCGGATAAGTGCATTTAGAGATCGACT--TGTC----TGA-T--CAC---ATTG---AACTGGAC
gi|8 : tatatcatggttttggtgattatagTATTTTATTTGTCCGACT---C-TGAAA--AAAAA------ACAAGGTTTC-TTGTTAAT----TT----T------CATTT--TCAAGATTTATA-TTTAATTTA-----------GTAATATCAAAATTT-AAAGCTTTAC-CTATT----AA----------TCAAAATAGAA-AGTT-GATG-----------TTTG-----TC-AAGTCCA-TAA-TTAAC-TTTG-----AC--TAT-TTCTC-------AAGAAGGCC------AGAGG-Acggacaatcggacaagttgtaatgttgagc
gi|9 : TATTTTACTTGTCCAACT---C-TAAAC--AAAAACTGGACACAAAGTGTA-TTGTTAA-----TT----T------TATTT--TCAAGATTTATA-T
Alignments
lowQualScore : 2222222 111111111111111111 11 22222222222 33333333333333333 22222222222 11111 11111 3333333 111111 444444444 1 11 1 1 1111
lowQualScore : 0 888 5 888 1111111 0 5 555555555555555555 55 0 4 11 1 11111111111 0 66 55 44444444444444444 4 4 88888888888 11111 4 4 4 4 11111 66 5 0000000 444444 6 999999999 6666 99 0 7 3 88 1 1 5 1 1 5 5 1 5 00 66 0000 5 66 5 888
lowQualScore : . ... . ... ....... . . .................. .. . . .. . ........... . .. .. ................. . . ........... ..... . . . . ..... .. . ....... ...... . ......... .... .. . . . .. . . . . . . . . . .. .. .... . .. . ...
lowQualScore : 2 888 0 000 2222222 1 0 999999999999999999 55 9 0 99 8 11111111111 8 33 44 22222222222222222 4 4 99999999999 11111 4 4 4 4 11111 11 0 6666666 444444 7 222222222 2222 00 0 0 7 00 0 0 0 0 0 5 7 3 0 22 99 6666 0 99 0 888
consensus : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAA----------TCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAGTT-G---T--ACTTGTCCGATCGNA-AAGTGAACTTCGACTAGTTCTCATGAANGNCAGAGNANAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
Reference ( family-3119 ) : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAA----------TCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAGTTAG---T--ACTTGTCCGATCGCA-AAATGAACTTCGACTAGTTCTCATGAANGNCAGAGNANAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|1 : TATTTTACTTGTCCGACT---C-TGAAT--GAAA-------ACAAGGTTTA-TTGTAAAC----TT----T------TATTT--TCCAGATTTGTA-TTGAATTTATGATTAATTTAGTAATATCACAATTT-AAAGGTTTAT-TTGTTAATCAAAATAGAACAATCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-CTTG-----AC--TAG-TACTC-------ATGAAGGCC------AGGGG-AGAAGCTTAAAAAGT------T--ACTTGTCAGGTC-CA-TAATTAACCTTGACTAGTTCTCATGAAGGCCAGAGGAGAAGCTTAAAAGGTT-ACTTGTCCTATCGGACAAGTACATTTAGAGATTGACTAATGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|10 : T----T------TATTT--TCAAGATATATA-TCAAATTTA-----------GTA---TCAAAGTTG-AAAGCTTTAA-TTATTTATCAA----------TCAAAATAGAA-CGT-----------------------------------------TTGAC-T-------------AA-TTCCC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAGT------T--ACTTGTCCTATCGGACAAGTGAATTTAGA
gi|11 : ----T------TGCTT--GCAAGATTTATA-TCAAATTTA-----------GTAATATCAAAGTTG-AAAGCTTTAT-TTATTAATCAA--------------AGTACAA-CGTT-GATG-----------TTTG-----TC-AATGCCA-TAA-TTTAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAg
gi|12 : AAGTT-ACTTGTCCGATCGGACAAGTACAAAAAGAGATTGACT--TGTC----CGA-T--TGCAA-ATTG---AACTGGACAa
gi|13 : AAAGTT-ACTTGTCCTA---GAC--GTGCATTTAGAGACTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAcggacaatcagacaagtgttaatgttgagccct
gi|14 : aAAGTT-ACTCGTCCTATCGGAAAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAgggacaattggacaaacgttaatgttgaggcct
gi|15 : -ACTTGTCTGATTGGACAAGTGCATTTACAGATTGGCT--TGTC----CAA-TAAAAAAA-AATG---AACTGGACAgggacaatcggacaaacgttaatgttgagg
gi|16 : GGACAAGTGCATTTAGAGATTGACT--TGTCAAATTGA-T--CACAA-AATG---AACTGGACAcaaacaatcaatgttgagcac
gi|17 : aAAAGTT-A-TTGTCCTA--AGACC-GTGCATTTAGAGACTGACT--TGTC----CGATT--CACAACAATAAATAACTGGACAcggacaaatgttaaataatgttgggccct
gi|2 : TTTTATTTGTCAGACTTCTC-TGAAT--AAAA-------ACA-GGTTTAATTGTTAAC----TC----TAATACTTATTTATTCAAGATTTATACTTGAATTTA-----------GTAATATCAAAATTA-TAAGCTTTA---TATCTATTAA----------TTAAAATAGAATTATTAGATGGGT--------TTTGGAGCTTCGAGGTCCATTAA-TCAA--TTTG-----ACCTTAGTTTCTCTTAATTTATG-AGGCC------GAAGGAAGAAgggacaaatt
gi|3 : aagggctcaaacattactttaattttcactagttgtccgataacggatatacgatcactttacgtttatgtccgaatgcatttcatTATTTTACTTGTCCGAAT---C-TGAACAAAAAA-------ACGAAGTTTA-TTGTTAAC-----T----T------TATTT--TGAAGACTGA------AA--TA-----------GT--TAT---AG----AAA----TAT-TTATTAG--A------------CAAAACAGAA-CATT-GATGTAAAGCCAAACTTTA-----TC-TGGTCCG-TAA-TTAAC-TTTAGTTATAA--TAG-TTTTCATAAGT-ATGAAGACC------AG
gi|4 : acagggctcaacattaacttaaatttccacttggacaagctgctaccaannnnnnnnnnnnnnnnnnnnnnnnncatgttacttatctgtatcactgtatgtaTATTTTACTTGTCCGACT---C-TGAAT--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATG-TTGAATTTA-----------GTAATATCAAGATTT-AAAGCTTTAT-TCATTAATTAA----------TCAAAATAGAA-TGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCCAGATCTAGAGG-AGAAGCTTAAAAAGTTAGAGATTGACTTGTTCGATCACA-AAATGGACT
gi|5 : TATTTTA-TTGTCCAACT---CCTGAAC--AAAA-------AC--TGTACA-TCATTAACAAGTTTATAAT------TATTT--TCAAGATT-ATA-TTCAAGTTA-----------GTAATATCAAAGTTTCAGGGTTTTAT-TTATT-----A----------TCAAAATAGAA-CGTT-G--G-----------TTGG-----TA-AGGTCAT-TAATTTAACATCTG-----AA--TAggacaggcctagggacaatcggacaaacgttaatgtt
gi|6 : ctgtcaaccagggctctcaacttaattttcacttgtcaaagcggacaagttgcacaaatgttattgtctcgaatgtaTTTTACTTGTCCAGCT---G-T---T--AAAA-------ACAAGGTTTA-TTGTTAA-----TT----T------TATTT--TCAAGACTAATA-T----------------------GCATCAAAGTTT-ATAGCCTTATATTATTAA-----------------------AA-CGTT-GATG-----------TTTA-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCT------AGAGA-AGAAGC
gi|7 : ggggctcaacattaacttaaatttccacttgtccattggacaaactgccaccaaatgttactTTAGTAGCTTCG---T--ACTTG--AAATTGAA-AAGTG--CTGCAGCTAGTTT--ATGAATAATA-AGTACAAGCT-AGAAAGTTGACTTGTCTGATCGGATAAGTGCATTTAGAGATCGACT--TGTC----TGA-T--CAC---ATTG---AACTGGAC
gi|8 : tatatcatggttttggtgattatagTATTTTATTTGTCCGACT---C-TGAAA--AAAAA------ACAAGGTTTC-TTGTTAAT----TT----T------CATTT--TCAAGATTTATA-TTTAATTTA-----------GTAATATCAAAATTT-AAAGCTTTAC-CTATT----AA----------TCAAAATAGAA-AGTT-GATG-----------TTTG-----TC-AAGTCCA-TAA-TTAAC-TTTG-----AC--TAT-TTCTC-------AAGAAGGCC------AGAGG-Acggacaatcggacaagttgtaatgttgagc
gi|9 : TATTTTACTTGTCCAACT---C-TAAAC--AAAAACTGGACACAAAGTGTA-TTGTTAA-----TT----T------TATTT--TCAAGATTTATA-T
Alignments
lowQualScore : 2222222 111111111111111111 11 22222222222 33333333333333333 22222222222 11111 11111 3333333 111111 555555555 1 11 1 1 1111
lowQualScore : 0 888 5 888 1111111 0 5 555555555555555555 55 0 4 11 1 11111111111 0 66 55 44444444444444444 4 4 88888888888 11111 4 4 4 4 11111 66 5 0000000 444444 6 0 111111111 6666 77 0 7 3 88 1 1 5 1 1 5 5 1 5 00 66 0000 5 66 5 888
lowQualScore : . ... . ... ....... . . .................. .. . . .. . ........... . .. .. ................. . . ........... ..... . . . . ..... .. . ....... ...... . . ......... .... .. . . . .. . . . . . . . . . .. .. .... . .. . ...
lowQualScore : 2 888 0 000 2222222 1 0 999999999999999999 55 9 0 99 8 11111111111 8 33 44 22222222222222222 4 4 99999999999 11111 4 4 4 4 11111 11 0 6666666 444444 7 7 888888888 2222 55 0 0 7 00 0 0 0 0 0 5 7 3 0 22 99 6666 0 99 0 888
consensus : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAA----------TCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAAAAAGTC----GT--ACTTGTCCGATCGNA-AAGTGAACTTCGACTAGTTCTCATGAANGNCAGAGNANAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
Reference ( family-3119 ) : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAA----------TCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAGTT----GT--ACTTGTCCGATCGNA-AAGTGAACTTCGACTAGTTCTCATGAANGNCAGAGNANAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|1 : TATTTTACTTGTCCGACT---C-TGAAT--GAAA-------ACAAGGTTTA-TTGTAAAC----TT----T------TATTT--TCCAGATTTGTA-TTGAATTTATGATTAATTTAGTAATATCACAATTT-AAAGGTTTAT-TTGTTAATCAAAATAGAACAATCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-CTTG-----AC--TAG-TACTC-------ATGAAGGCC------AGGGG-AGAAGCTTAAAAAGT------T--ACTTGTCAGGTC-CA-TAATTAACCTTGACTAGTTCTCATGAAGGCCAGAGGAGAAGCTTAAAAGGTT-ACTTGTCCTATCGGACAAGTACATTTAGAGATTGACTAATGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|10 : T----T------TATTT--TCAAGATATATA-TCAAATTTA-----------GTA---TCAAAGTTG-AAAGCTTTAA-TTATTTATCAA----------TCAAAATAGAA-CGT-----------------------------------------TTGAC-T-------------AA-TTCCC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAGT------T--ACTTGTCCTATCGGACAAGTGAATTTAGA
gi|11 : ----T------TGCTT--GCAAGATTTATA-TCAAATTTA-----------GTAATATCAAAGTTG-AAAGCTTTAT-TTATTAATCAA--------------AGTACAA-CGTT-GATG-----------TTTG-----TC-AATGCCA-TAA-TTTAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAg
gi|12 : AAGTT-ACTTGTCCGATCGGACAAGTACAAAAAGAGATTGACT--TGTC----CGA-T--TGCAA-ATTG---AACTGGACAa
gi|13 : AAAGTT-ACTTGTCCTA---GAC--GTGCATTTAGAGACTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAcggacaatcagacaagtgttaatgttgagccct
gi|14 : aAAGTT-ACTCGTCCTATCGGAAAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAgggacaattggacaaacgttaatgttgaggcct
gi|15 : -ACTTGTCTGATTGGACAAGTGCATTTACAGATTGGCT--TGTC----CAA-TAAAAAAA-AATG---AACTGGACAgggacaatcggacaaacgttaatgttgagg
gi|16 : GGACAAGTGCATTTAGAGATTGACT--TGTCAAATTGA-T--CACAA-AATG---AACTGGACAcaaacaatcaatgttgagcac
gi|17 : aAAAGTT-A-TTGTCCTA--AGACC-GTGCATTTAGAGACTGACT--TGTC----CGATT--CACAACAATAAATAACTGGACAcggacaaatgttaaataatgttgggccct
gi|2 : TTTTATTTGTCAGACTTCTC-TGAAT--AAAA-------ACA-GGTTTAATTGTTAAC----TC----TAATACTTATTTATTCAAGATTTATACTTGAATTTA-----------GTAATATCAAAATTA-TAAGCTTTA---TATCTATTAA----------TTAAAATAGAATTATTAGATGGGT--------TTTGGAGCTTCGAGGTCCATTAA-TCAA--TTTG-----ACCTTAGTTTCTCTTAATTTATG-AGGCC------GAAGGAAGAAgggacaaatt
gi|3 : aagggctcaaacattactttaattttcactagttgtccgataacggatatacgatcactttacgtttatgtccgaatgcatttcatTATTTTACTTGTCCGAAT---C-TGAACAAAAAA-------ACGAAGTTTA-TTGTTAAC-----T----T------TATTT--TGAAGACTGA------AA--TA-----------GT--TAT---AG----AAA----TAT-TTATTAG--A------------CAAAACAGAA-CATT-GATGTAAAGCCAAACTTTA-----TC-TGGTCCG-TAA-TTAAC-TTTAGTTATAA--TAG-TTTTCATAAGT-ATGAAGACC------AG
gi|4 : acagggctcaacattaacttaaatttccacttggacaagctgctaccaannnnnnnnnnnnnnnnnnnnnnnnncatgttacttatctgtatcactgtatgtaTATTTTACTTGTCCGACT---C-TGAAT--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATG-TTGAATTTA-----------GTAATATCAAGATTT-AAAGCTTTAT-TCATTAATTAA----------TCAAAATAGAA-TGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCCAGATCTAGAGG-AGAAGCTTAAAAAGTTAGAGATTGACTTGTTCGATCACA-AAATGGACT
gi|5 : TATTTTA-TTGTCCAACT---CCTGAAC--AAAA-------AC--TGTACA-TCATTAACAAGTTTATAAT------TATTT--TCAAGATT-ATA-TTCAAGTTA-----------GTAATATCAAAGTTTCAGGGTTTTAT-TTATT-----A----------TCAAAATAGAA-CGTT-G--G-----------TTGG-----TA-AGGTCAT-TAATTTAACATCTG-----AA--TAggacaggcctagggacaatcggacaaacgttaatgtt
gi|6 : ctgtcaaccagggctctcaacttaattttcacttgtcaaagcggacaagttgcacaaatgttattgtctcgaatgtaTTTTACTTGTCCAGCT---G-T---T--AAAA-------ACAAGGTTTA-TTGTTAA-----TT----T------TATTT--TCAAGACTAATA-T----------------------GCATCAAAGTTT-ATAGCCTTATATTATTAA-----------------------AA-CGTT-GATG-----------TTTA-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCT------AGAGA-AGAAGC
gi|7 : ggggctcaacattaacttaaatttccacttgtccattggacaaactgccaccaaatgttactTC----GT--ACTTG--AAATTGAA-AAGTG--CTGCAGCTAGTTT--ATGAATAATA-AGTACAAGCT-AGAAAGTTGACTTGTCTGATCGGATAAGTGCATTTAGAGATCGACT--TGTC----TGA-T--CAC---ATTG---AACTGGAC
gi|8 : tatatcatggttttggtgattatagttagtagctTATTTTATTTGTCCGACT---C-TGAAA--AAAAA------ACAAGGTTTC-TTGTTAAT----TT----T------CATTT--TCAAGATTTATA-TTTAATTTA-----------GTAATATCAAAATTT-AAAGCTTTAC-CTATT----AA----------TCAAAATAGAA-AGTT-GATG-----------TTTG-----TC-AAGTCCA-TAA-TTAAC-TTTG-----AC--TAT-TTCTC-------AAGAAGGCC------AGAGG-Acggacaatcggacaagttgtaatgttgagc
gi|9 : TATTTTACTTGTCCAACT---C-TAAAC--AAAAACTGGACACAAAGTGTA-TTGTTAA-----TT----T------TATTT--TCAAGATTTATA-T
Alignments
lowQualScore : 2222222 111111111111111111 11 22222222222 33333333333333333 22222222222 11111 11111 3333333 111111 555555555 1 11 1 1 1111
lowQualScore : 0 888 5 888 1111111 0 5 555555555555555555 55 0 4 11 1 11111111111 0 66 55 44444444444444444 4 4 88888888888 11111 4 4 4 4 11111 66 5 0000000 444444 6 111111111 6666 77 0 7 3 88 1 1 5 1 1 5 5 1 5 00 66 0000 5 66 5 888
lowQualScore : . ... . ... ....... . . .................. .. . . .. . ........... . .. .. ................. . . ........... ..... . . . . ..... .. . ....... ...... . ......... .... .. . . . .. . . . . . . . . . .. .. .... . .. . ...
lowQualScore : 2 888 0 000 2222222 1 0 999999999999999999 55 9 0 99 8 11111111111 8 33 44 22222222222222222 4 4 99999999999 11111 4 4 4 4 11111 11 0 6666666 444444 7 555555555 2222 55 0 0 7 00 0 0 0 0 0 5 7 3 0 22 99 6666 0 99 0 888
consensus : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAA----------TCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAAAAAGTC----GT--ACTTGTCCGATCGNA-AAGTGAACTTCGACTAGTTCTCATGAANGNCAGAGNANAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
Reference ( family-3119 ) : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAA----------TCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAAAAAGTC----GT--ACTTGTCCGATCGNA-AAGTGAACTTCGACTAGTTCTCATGAANGNCAGAGNANAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|1 : TATTTTACTTGTCCGACT---C-TGAAT--GAAA-------ACAAGGTTTA-TTGTAAAC----TT----T------TATTT--TCCAGATTTGTA-TTGAATTTATGATTAATTTAGTAATATCACAATTT-AAAGGTTTAT-TTGTTAATCAAAATAGAACAATCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-CTTG-----AC--TAG-TACTC-------ATGAAGGCC------AGGGG-AGAAGCTTAAAAAGT------T--ACTTGTCAGGTC-CA-TAATTAACCTTGACTAGTTCTCATGAAGGCCAGAGGAGAAGCTTAAAAGGTT-ACTTGTCCTATCGGACAAGTACATTTAGAGATTGACTAATGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|10 : T----T------TATTT--TCAAGATATATA-TCAAATTTA-----------GTA---TCAAAGTTG-AAAGCTTTAA-TTATTTATCAA----------TCAAAATAGAA-CGT-----------------------------------------TTGAC-T-------------AA-TTCCC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAGT------T--ACTTGTCCTATCGGACAAGTGAATTTAGA
gi|11 : ----T------TGCTT--GCAAGATTTATA-TCAAATTTA-----------GTAATATCAAAGTTG-AAAGCTTTAT-TTATTAATCAA--------------AGTACAA-CGTT-GATG-----------TTTG-----TC-AATGCCA-TAA-TTTAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAg
gi|12 : AAGTT-ACTTGTCCGATCGGACAAGTACAAAAAGAGATTGACT--TGTC----CGA-T--TGCAA-ATTG---AACTGGACAa
gi|13 : AAAGTT-ACTTGTCCTA---GAC--GTGCATTTAGAGACTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAcggacaatcagacaagtgttaatgttgagccct
gi|14 : aAAGTT-ACTCGTCCTATCGGAAAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAgggacaattggacaaacgttaatgttgaggcct
gi|15 : -ACTTGTCTGATTGGACAAGTGCATTTACAGATTGGCT--TGTC----CAA-TAAAAAAA-AATG---AACTGGACAgggacaatcggacaaacgttaatgttgagg
gi|16 : GGACAAGTGCATTTAGAGATTGACT--TGTCAAATTGA-T--CACAA-AATG---AACTGGACAcaaacaatcaatgttgagcac
gi|17 : aAAAGTT-A-TTGTCCTA--AGACC-GTGCATTTAGAGACTGACT--TGTC----CGATT--CACAACAATAAATAACTGGACAcggacaaatgttaaataatgttgggccct
gi|2 : TTTTATTTGTCAGACTTCTC-TGAAT--AAAA-------ACA-GGTTTAATTGTTAAC----TC----TAATACTTATTTATTCAAGATTTATACTTGAATTTA-----------GTAATATCAAAATTA-TAAGCTTTA---TATCTATTAA----------TTAAAATAGAATTATTAGATGGGT--------TTTGGAGCTTCGAGGTCCATTAA-TCAA--TTTG-----ACCTTAGTTTCTCTTAATTTATG-AGGCC------GAAGGAAGAAgggacaaatt
gi|3 : aagggctcaaacattactttaattttcactagttgtccgataacggatatacgatcactttacgtttatgtccgaatgcatttcatTATTTTACTTGTCCGAAT---C-TGAACAAAAAA-------ACGAAGTTTA-TTGTTAAC-----T----T------TATTT--TGAAGACTGA------AA--TA-----------GT--TAT---AG----AAA----TAT-TTATTAG--A------------CAAAACAGAA-CATT-GATGTAAAGCCAAACTTTA-----TC-TGGTCCG-TAA-TTAAC-TTTAGTTATAA--TAG-TTTTCATAAGT-ATGAAGACC------AG
gi|4 : acagggctcaacattaacttaaatttccacttggacaagctgctaccaannnnnnnnnnnnnnnnnnnnnnnnncatgttacttatctgtatcactgtatgtaTATTTTACTTGTCCGACT---C-TGAAT--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATG-TTGAATTTA-----------GTAATATCAAGATTT-AAAGCTTTAT-TCATTAATTAA----------TCAAAATAGAA-TGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCCAGATCTAGAGG-AGAAGCTTAAAAAGTTAGAGATTGACTTGTTCGATCACA-AAATGGACT
gi|5 : TATTTTA-TTGTCCAACT---CCTGAAC--AAAA-------AC--TGTACA-TCATTAACAAGTTTATAAT------TATTT--TCAAGATT-ATA-TTCAAGTTA-----------GTAATATCAAAGTTTCAGGGTTTTAT-TTATT-----A----------TCAAAATAGAA-CGTT-G--G-----------TTGG-----TA-AGGTCAT-TAATTTAACATCTG-----AA--TAggacaggcctagggacaatcggacaaacgttaatgtt
gi|6 : ctgtcaaccagggctctcaacttaattttcacttgtcaaagcggacaagttgcacaaatgttattgtctcgaatgtaTTTTACTTGTCCAGCT---G-T---T--AAAA-------ACAAGGTTTA-TTGTTAA-----TT----T------TATTT--TCAAGACTAATA-T----------------------GCATCAAAGTTT-ATAGCCTTATATTATTAA-----------------------AA-CGTT-GATG-----------TTTA-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCT------AGAGA-AGAAGC
gi|7 : ggggctcaacattaacttaaatttccacttgtccattggacaaactgccaccaaatgttactTC----GT--ACTTG--AAATTGAA-AAGTG--CTGCAGCTAGTTT--ATGAATAATA-AGTACAAGCT-AGAAAGTTGACTTGTCTGATCGGATAAGTGCATTTAGAGATCGACT--TGTC----TGA-T--CAC---ATTG---AACTGGAC
gi|8 : tatatcatggttttggtgattatagttagtagctTATTTTATTTGTCCGACT---C-TGAAA--AAAAA------ACAAGGTTTC-TTGTTAAT----TT----T------CATTT--TCAAGATTTATA-TTTAATTTA-----------GTAATATCAAAATTT-AAAGCTTTAC-CTATT----AA----------TCAAAATAGAA-AGTT-GATG-----------TTTG-----TC-AAGTCCA-TAA-TTAAC-TTTG-----AC--TAT-TTCTC-------AAGAAGGCC------AGAGG-Acggacaatcggacaagttgtaatgttgagc
gi|9 : TATTTTACTTGTCCAACT---C-TAAAC--AAAAACTGGACACAAAGTGTA-TTGTTAA-----TT----T------TATTT--TCAAGATTTATA-T
blockSeqs : TCT C CAA ACTGGAC A CAAGTTTATAAT AT C CA T . TC TA TATCAAT T A TAAAGCCAAAC GAGCT G T T A GTTAT CT T TTAATTT AGATCT A TAGAGATTG TCCT GG C A A . T A . T C . G G T . AAAT T AA C AAT
blockSeqs : . . T A . CTCTAATACT . . CA T . G A TATTAAT . . GGT . . . . . . . . ATAAGT . . CGT TTCG AC . G C . T T . . . . . .
blockSeqs : . . T . . CTTT . . TG T . G T AATTAAT . . . . . . . . . . . . . . T AA GA . . . T T . . . . . .
blockSeqs : . . C . . TTTT . . TG T . A T AATCAA . . . . . . . . . . . . . . . G T . . . . . .
blockSeqs : . . T . . CTT . . TC G . T T AGA . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . A . . TTT . . TT T . T T AAT . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . C . . TTT . . . . . T C AT . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . AA . . . . . . . . . .
blockSeqs : . .
blockSeqCons : CTTT************** *********** AATAAT*********** **
originalCons : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATCAA----------TCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAAAAAGTC----GT--ACTTGTCCGATCGNA-AAGTGAACTTCGACTAGTTCTCATGAANGNCAGAGNANAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
finalCons : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAACTTT--------------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTATTAATAAT-----------CAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAAAAAGTC----GT--ACTTGTCCGATCGNA-AAGTGAACTTCGACTAGTTCTCATGAANGNCAGAGNANAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
Alignments
lowQualScore : 2222222 111111111111111111 11 22222222222 4444444444444444444 22222222222 11111 11111 3333333 111111 555555555 1 11 1 1 1111
lowQualScore : 0 888 5 888 1111111 0 5 555555555555555555 55 0 4 11 1 11111111111 0 66 55 8888888888888888888 4 4 88888888888 11111 4 4 4 8 11111 66 5 0000000 444444 6 111111111 6666 77 0 7 3 88 1 1 5 1 1 5 5 1 5 00 66 0000 5 66 5 888
lowQualScore : . ... . ... ....... . . .................. .. . . .. . ........... . .. .. ................... . . ........... ..... . . . . ..... .. . ....... ...... . ......... .... .. . . . .. . . . . . . . . . .. .. .... . .. . ...
lowQualScore : 2 888 0 000 2222222 1 0 999999999999999999 55 9 0 99 8 11111111111 8 33 44 1111111111111111111 4 4 99999999999 11111 4 4 4 9 11111 11 0 6666666 444444 7 555555555 2222 55 0 0 7 00 0 0 0 0 0 5 7 3 0 22 99 6666 0 99 0 888
consensus : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTAT-TAA-T-----------AATCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAAAAAGTC----GT--ACTTGTCCGATCGNA-AAGTGAACTTCGACTAGTTCTCATGAANGNCAGAGNANAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
Reference ( family-3119 ) : TATTTTACTTGTCCGACT---C-TGAAC--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATA-TCGAATTTA-----------GTAATATCAAAGTTT-AAAGCTTTAT-TTAT-TAA-T-----------AATCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAGG-AGAAGCTTAAAAAGTC----GT--ACTTGTCCGATCGNA-AAGTGAACTTCGACTAGTTCTCATGAANGNCAGAGNANAAGCTTAGAAAGTT-ACTTGTCCTATCGGACAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|1 : TATTTTACTTGTCCGACT---C-TGAAT--GAAA-------ACAAGGTTTA-TTGTAAAC----TT----T------TATTT--TCCAGATTTGTA-TTGAATTTATGATTAATTTAGTAATATCACAATTT-AAAGGTTTAT-TTGT-TAA-TCAAAATAGAACAATCAAAATAGAA-CGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-CTTG-----AC--TAG-TACTC-------ATGAAGGCC------AGGGG-AGAAGCTTAAAAAGT------T--ACTTGTCAGGTC-CA-TAATTAACCTTGACTAGTTCTCATGAAGGCCAGAGGAGAAGCTTAAAAGGTT-ACTTGTCCTATCGGACAAGTACATTTAGAGATTGACTAATGTC----CGA-T--CACAA-AATG---AACTGGACA
gi|10 : T----T------TATTT--TCAAGATATATA-TCAAATTTA-----------GTA---TCAAAGTTG-AAAGCTTTAA-TTAT-T---T-----------A-TCAA-------------------------------------TC-AAA---A-TAG---AACGTTTG-----AC--TAA-TTCCC-------ATGAAGGCC------AGAGG-AGAAGCTTAGAAAGT------T--ACTTGTCCTATCGGACAAGTGAATTTAGA
gi|11 : ----T------TGCTT--GCAAGATTTATA-TCAAATTTA-----------GTAATATCAAAGTTG-AAAGCTTTAT-TTAT-TAA-T--------------CAAAGTACAA-CGTT-GATG-----------TTTG-----TC-AATGCCA-TAA-TTTAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCC------AGAg
gi|12 : AAGTT-ACTTGTCCGATCGGACAAGTACAAAAAGAGATTGACT--TGTC----CGA-T--TGCAA-ATTG---AACTGGACAa
gi|13 : AAAGTT-ACTTGTCCTA---GAC--GTGCATTTAGAGACTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAcggacaatcagacaagtgttaatgttgagccct
gi|14 : aAAGTT-ACTCGTCCTATCGGAAAAGTGCATTTAGAGATTGACT--TGTC----CGA-T--CACAA-AATG---AACTGGACAgggacaattggacaaacgttaatgttgaggcct
gi|15 : -ACTTGTCTGATTGGACAAGTGCATTTACAGATTGGCT--TGTC----CAA-TAAAAAAA-AATG---AACTGGACAgggacaatcggacaaacgttaatgttgagg
gi|16 : GGACAAGTGCATTTAGAGATTGACT--TGTCAAATTGA-T--CACAA-AATG---AACTGGACAcaaacaatcaatgttgagcac
gi|17 : aAAAGTT-A-TTGTCCTA--AGACC-GTGCATTTAGAGACTGACT--TGTC----CGATT--CACAACAATAAATAACTGGACAcggacaaatgttaaataatgttgggccct
gi|2 : TTTTATTTGTCAGACTTCTC-TGAAT--AAAA-------ACA-GGTTTAATTGTTAAC----TC----TAATACTTATTTATTCAAGATTTATACTTGAATTTA-----------GTAATATCAAAATTA-TAAGCTTTA---TATCTAT-T-----------AATTAAAATAGAATTATTAGATGGGT--------TTTGGAGCTTCGAGGTCCATTAA-TCAA--TTTG-----ACCTTAGTTTCTCTTAATTTATG-AGGCC------GAAGGAAGAAgggacaaatt
gi|3 : aagggctcaaacattactttaattttcactagttgtccgataacggatatacgatcactttacgtttatgtccgaatgcatttcatTATTTTACTTGTCCGAAT---C-TGAACAAAAAA-------ACGAAGTTTA-TTGTTAAC-----T----T------TATTT--TGAAGACTGA------AA--TA-----------GT--TAT---AG----AAA----TAT-TTAT-TAG-------------A--CAAAACAGAA-CATT-GATGTAAAGCCAAACTTTA-----TC-TGGTCCG-TAA-TTAAC-TTTAGTTATAA--TAG-TTTTCATAAGT-ATGAAGACC------AG
gi|4 : acagggctcaacattaacttaaatttccacttggacaagctgctaccaannnnnnnnnnnnnnnnnnnnnnnnncatgttacttatctgtatcactgtatgtaTATTTTACTTGTCCGACT---C-TGAAT--AAAA-------ACAAGGTTTA-TTGTTAAC----TT----T------TATTT--TCAAGATTTATG-TTGAATTTA-----------GTAATATCAAGATTT-AAAGCTTTAT-TCAT-TAATT-----------AATCAAAATAGAA-TGTT-GATG-----------TTTG-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCCAGATCTAGAGG-AGAAGCTTAAAAAGTTAGAGATTGACTTGTTCGATCACA-AAATGGACT
gi|5 : TATTTTA-TTGTCCAACT---CCTGAAC--AAAA-------AC--TGTACA-TCATTAACAAGTTTATAAT------TATTT--TCAAGATT-ATA-TTCAAGTTA-----------GTAATATCAAAGTTTCAGGGTTTTAT-TTAT-T----------------ATCAAAATAGAA-CGTT-G--G-----------TTGG-----TA-AGGTCAT-TAATTTAACATCTG-----AA--TAggacaggcctagggacaatcggacaaacgttaatgtt
gi|6 : ctgtcaaccagggctctcaacttaattttcacttgtcaaagcggacaagttgcacaaatgttattgtctcgaatgtaTTTTACTTGTCCAGCT---G-T---T--AAAA-------ACAAGGTTTA-TTGTTAA-----TT----T------TATTT--TCAAGACTAATA-T----------------------GCATCAAAGTTT-ATAGCCTTATATTAT-TAA------------------------AA-CGTT-GATG-----------TTTA-----TC-AGGTCCA-TAA-TTAAC-TTTG-----AC--TAG-TTCTC-------ATGAAGGCT------AGAGA-AGAAGC
gi|7 : ggggctcaacattaacttaaatttccacttgtccattggacaaactgccaccaaatgttactTC----GT--ACTTG--AAATTGAA-AAGTG--CTGCAGCTAGTTT--ATGAATAATA-AGTACAAGCT-AGAAAGTTGACTTGTCTGATCGGATAAGTGCATTTAGAGATCGACT--TGTC----TGA-T--CAC---ATTG---AACTGGAC
gi|8 : tatatcatggttttggtgattatagttagtagctTATTTTATTTGTCCGACT---C-TGAAA--AAAAA------ACAAGGTTTC-TTGTTAAT----TT----T------CATTT--TCAAGATTTATA-TTTAATTTA-----------GTAATATCAAAATTT-AAAGCTTTAC-CTAT-----T-----------AATCAAAATAGAA-AGTT-GATG-----------TTTG-----TC-AAGTCCA-TAA-TTAAC-TTTG-----AC--TAT-TTCTC-------AAGAAGGCC------AGAGG-Acggacaatcggacaagttgtaatgttgagc
gi|9 : TATTTTACTTGTCCAACT---C-TAAAC--AAAAACTGGACACAAAGTGTA-TTGTTAA-----TT----T------TATTT--TCAAGATTTATA-T