lowQualScore : 1111111111
lowQualScore : 1 1 1 11 1 11 111 22222222 1 11 1 111 22222 11 33333333333333 33333333333 222 1 3333 111 11 11 1 222 1 11 11 11 1 11 0000000000
lowQualScore : 3 0 0 3 6 6 66 6 33 0 2 44 2 3 66 000 3 66666666 0 33 3 0 000 11111 7 8 11 66666666666666 6 00000000000 6 6 000 6 5 2 7777 4 4 888 4 2 22 0 33 2 5 2 2 6 6 333 7 1 6 7 3 88 99 88 0 22 2 9 8888888888 3
lowQualScore : . . . . . . .. . .. . . .. . . .. ... . ........ . .. . . ... ..... . . .. .............. . ........... . . ... . . . .... . . ... . . .. . .. . . . . . . ... . . . . . .. .. .. . .. . . .......... .
lowQualScore : 3 0 0 2 0 5 88 0 88 0 5 55 5 2 00 888 2 88888888 0 88 2 0 000 44444 8 0 00 22222222222222 7 00000000000 7 7 000 7 1 5 7777 4 4 888 2 0 55 8 22 0 0 5 5 0 0 333 3 0 7 3 3 00 33 77 0 00 5 8 2222222222 2
consensus : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--ATT-AAAGATCATAACTAGAAAATTACAAAAA-GT-TATTCAGAATCTTTATAAAC-ACA--TTGGA-TATGAT-A-ATAA---TTACAAAATAATT-CCCT-NTTCTC---AATTTT----AACTGG-TAC-C---------CTG-TT-GACTT-CGCATCTCTT-ACGTTTGTGTGTAAG-CATCAA-TCAGCG-GGGTACCAGTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTAC-AAGATCAAAATGATTTCAATTTNAAAGCGCT---GCAGCTTTAGATAACTC-ATAATTGATACTA-AAATTTG-TTTTTGGAGTTCTTTTTGCAAAAT-ATTGTGATGTCATTTTTT---------GATAGACACTATGCCTTTAAA
Reference ( gi|1 ) : TCTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTCTGCATGTTCCAAAAAGGTGGTGAA--ATT-AAAGATCATAACTAGAAAATTACAAAAG-GT-TATTCAGAATGTTTTCAAAC-ACA--TTGGA-TATGAT-A-ATAA---TAACAAAATAGTT-CCCT-TTTCTC---A--TTT----GACTGG-TAC-C---------CTG-TT-GACTT-TGCATCTCTT-ATGTTTATGTGTAAGCCACCAA-TCAGCT-GGGTACCAGCTTTATATATTGTCCTCCAGACAATAATTTTATAAAGGGCTAC-AAGGTGAAAATGATTTCAATTTCAAGGCACT---GCAGTTTGAGATAACTC-ATGCTTGATACTACAAATTTGGTTTTTGGAGTTCTTTTTGCAAAAT-ATCATGATGTCATTTTTTTAGGTAAAAGATAGACACTATGCCTTTAAA
gi|5 : TAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCAAA--ATTTAAAGATCATAACTAGAAAATTAAAAAAAAGT-TAT-CAGAATGTGTACAAAC-ACACTTTGAA-TATGAT-A-AAAA---TTACAAAATAATT-CCCT-TTTCTC---A--TTT----AGCTGG-TAC-C---------CTG-TT-GACTT-CACATCTCTT-ATGTTTGTGTGT-AGCTACCAA-TCAGTG-GGGTACCAGTT
gi|2 : TAAAGACATATGTATCTTAAGAATATTGGTA---TTTTGAAT-CTCCAA----GTGGCGAATAATT-AAAGATCAAAACTAGAAA-TTACAAAAA-GT-TATTCAGAATCTTTATAAACAACA--T--GATTATGATAA-ATAA---T-ACAAAATAATT--CCT-GTTCTCCTAA--TTTAAAAAACTGGTTAC-CTCCTTCCATCTGTTT-GACTT-CACATCTCTTAATGTTC-TGTAT-AGTCATCAACTCAG-T-GGGTACCAGTGTTATATATTGT-TTCCAGACGATAATTCTATAAAGGGCAAC--AGATCAAAATGATTTCAATTTAAAAGCGCTAACGC-TTTTGAT-TAACTC-ATATTTGATACT--AAATTT--TTTTATGATTCTTTTTTGCAAAATAATTGTGAT-TCAATTTTT---------AATAG-CTCTATGCCTTTTAA
gi|4 : AAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCGTGTTCCAAAAAGGTGGCGAA--ATT-AAA---CATAACTAGAAAATTACAAAAA-GTAAATTCAGAATCTTTATAAAC-ACA--TTGGA-TATGAT-A-ATAAATTTTACAAAATAAAT-CCCTGTTTCTC---AATTTT----AACTGG-TAC-C---------CTA-TT-GACTT-CACATCTCTT-ATG----TGTGT-AGCCG--AA---AGGTGGGGTAACAGTTTTGTATATTGTCgg
gi|7 : TCC-ACGA-TTTTGATAAAATTTTGCATATACCAAATAGGTGACAAA--ATC-AAAGATAAC-ACGA-AAAACCACGAAAA-GT-T-CTCAGA-------------ACA--CTGGA-CACGAT-G-ATGA---TTACAAATTCTTC-CCCT-t
gi|3 : aGAT-AGATAA---TATTAAAATAATTTCCCT-GTTCTC---AATTTT----AACTGG-TAC-C----------TG-TTTGACTT-CACATCTCTT-ATGTTTCTGTGT------TT---TCAGTG-GGGTACCAGTTTTATATATTGTCTTCCAGACAATAA--TTATAAAGGGCTACAAAGATCAAAATGATTTCAATTTAAAAGCGTT---GAAGCTTTAGATAACTCAATAATTGATACTAATAATTTGTTTTTTGGAGTTCCTTTTGCAAAAT-ATTGTGATGCCATTTTT----------GATAGACACTATGCCTTTAAAgt
gi|9 : gaaACTGG-TCCGC---------CTG-TT-GAGTTACGCATCGACT-ACACTTGTGCG-AAG-CATCAA-TCAACG-GGATACCAGTTTta
gi|10 : aACTGG-TCCGC---------CTG-TT-GAGTTACGCATCGGCT-ACA-CTGTGTGTAG--CATCAA-TCAACG-GGATACCAGTTT
gi|14 : TGTTTGTGTGTAA--CATCAA-TCAACG-GGGTACCAGTTT
gi|15 : GTTTGTGTGTAG--CACCAA-TCAAAG-GGGTAACAGTTTaa
gi|12 : TGTGTAG--CACCAA-TCAACG-GGGTACCAACT
gi|6 : gctactctcgagATATATTGTCTTCCAGACAATAATTCTATGAAGGGCTAC-AAGATCAAAATGATTTCAATTTCAAAGCGCT---GCAGCTTTAGATAACCC-ATAATTAAGTCTATAATTTTGATTTTTGGAGTTCTTTTTGCAAAAT-ATTGTGATGTCA-TTTTTTAGGTAAACGATAGACACTATGCCTTTAAgtttt
gi|8 : ATATTGTCCTCCAGACAATA--TTCATCGAGAGCTAA-AACGTCAAAATGATTT-GATTTCACAGCGC
gi|11 : agtctaTTTTTGGAGTTCTTTTTGCAAAAC-CTTGTGATGTCATTTTT----------GATAGACATTATGCCTTTAAAa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TCACCAGTCGGCACTTACATGTACAAGCTACAAGGTCATAATG
Unaligned ( gi|16 ): AAACTGGTCCGCCTGTTGAGTTACGCA
Alignments
lowQualScore : 1 11 11 111 11111 111 22222222222 1 1 1111 1 1 2222 3333 1 666666666
lowQualScore : 0 8 8 0 3 11 11 8 0 0 8 8888 0 5 0 22 8 11 0 6 1 6 111 6 77 33333 444 5 44444444444 1 1 5 6 8888 4 777 0 0 0 88 1 2 0 0 3 0000 2222 8 8 5 111111111 0
lowQualScore : . . . . . .. .. . . . . .... . . . .. . .. . . . . ... . .. ..... ... . ........... . . . . .... . ... . . . .. . . . . . .... .... . . . ......... .
lowQualScore : 0 0 0 8 2 88 00 0 8 8 0 8888 8 0 6 88 0 00 8 7 7 7 777 7 77 22222 000 7 33333333333 4 4 7 3 4444 0 000 8 8 8 88 0 5 0 0 5 8888 0000 0 0 8 000000000 8
consensus : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAAGT-TATTCAGAATNTTTACAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTC--AATTT---TAACTGG-TAC-C---------CTG-TTGACTT-CGCATCTCTT-ACGTTTGTGTGTAAG-CACCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTAC-AAGATCAAAATGATTTCAATTTCAAAGCGCTGNAGCTTTAGA-TAACTC-ATANTTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT--G--AA--GATAGACACTATGCCTTTAAA
Reference ( family-303 ) : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAAGT-TATTCAGAATCTTTATAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTC--AATTT---TAACTGG-TAC-C---------CTG-TTGACTT-CGCATCTCTT-ACGTTTGTGTGTAAG-CATCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTAC-AAGATCAAAATGATTTCAATTTNAAAGCGCTGCAGCTTTAGA-TAACTC-ATAATTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT---------GATAGACACTATGCCTTTAAA
gi|1 : TAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTCTGCATGTTCCAAAAAGGTGGTGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAGGT-TATTCAGAATGTTTTCAAAC-ACA--TTGGA-TATGAT-AATAA---TAACAAAATAGTT-CCCT-TTTCTC--A--TT---TGACTGG-TAC-C---------CTG-TTGACTT-TGCATCTCTT-ATGTTTATGTGTAAGCCACCAA-TCAGCTGGGTACCA---GCTTTATATATTGTCCTCCAGACAATAATTTTATAAAGGGCTAC-AAGGTGAAAATGATTTCAATTTCAAGGCACTGCAGTTTGAGA-TAACTC-ATGCTTGATACTACA-AATTTG-G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATCATGATGTCATTTTTTTAGGTAAAAGATAGACACTATGCCTTTAAA
gi|10 : tcACTGG-TCCGC---------CTG-TTGAGTTACGCATCGGCT-ACACT-GTGTGTA-G-CATCAA-TCAACGGGATACCA---GTTT
gi|11 : -TTTTTGGAGTTC-TTTTTGCAAAAC-CTTGTGATGTCA-TTTTT---------GATAGACATTATGCCTTTAAA
gi|12 : GTGTGTA-G-CACCAA-TCAACGGGGTACCAACTGTTTTag
gi|14 : gctactctcgaGTTTGTGTGTAA--CATCAA-TCAACGGGGTACCA---GTTT
gi|15 : tGTTTGTGTGT-AG-CACCAA-TCAAAGGGGTAACA---GTTTaa
gi|2 : TAAAGACATATGTATCTTAAGAATATTGGTA---TTTTGAAT-CTCCAA----GTGGCGAATAATT-AAAGATCAAAACTAGAAA-TT-ACAAAAAGT-TATTCAGAATCTTTATAAACAACA--T--GATTATGATAAATAA----TACAAAATAATT--CCT-GTTCTCCTAATTTAAAAAACTGGTTAC-CTCCTTCCATCTGTTTGACTT-CACATCTCTTAATGTTC-TGTATAGT-CATCAACTCAGT-GGGTACCA---GTGTTATATATTGT-TTCCAGACGATAATTCTATAAAGGGCAAC--AGATCAAAATGATTTCAATTTAAAAGCGCTAACGCTTTTGATTAACTC-ATATTTGATACT--A-AATTT--T-TTTATG--ATTCTTTTTTGCAAAATAATTGTGAT-TCAATTTTT---------AATAG-CTCTATGCCTTTTAA
gi|3 : GA-TA-GAT-AATA----TTA--AAATAATTTCCCT-GTTCTC--AATTT---TAACTGG-TA--C---------CTGTTTGACTT-CACATCTCTT-ATGTTTCTGTGT------TT---TCAGTGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAAT--TATAAAGGGCTACAAAGATCAAAATGATTTCAATTTAAAAGCGTTGAAGCTTTAGA-TAACTCAATAATTGATACTA-ATAATTT--GTTTTTTGGAGTTC-CTTTTGCAAAAT-ATTGTGATGCCA-TTTTT---------GATAGACACTATGCCTTTAAAgg
gi|4 : gaaAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCGTGTTCCAAAAAGGTGGCGAA--ATT-AAA---CATAACTAGAAAATT-ACAAAAAGTAAATTCAGAATCTTTATAAAC-ACA--TTGGA-TATGAT-AATAAATTTTACAAAATAAAT-CCCTGTTTCTC--AATTT---TAACTGG-TAC-C---------CTA-TTGACTT-CACATCTCTT-A----TGTGTGT-AG-C--CGA-AAGGTGGGGTAACA---GTTTTGTATATTGTCTta
gi|5 : TAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCAAA--ATTTAAAGATCATAACTAGAAAATTAAAAAAAAGT-TA-TCAGAATGTGTACAAAC-ACACTTTGAA-TATGAT-AAAAA---TTACAAAATAATT-CCCT-TTTCTC--A--TT---TAGCTGG-TAC-C---------CTG-TTGACTT-CACATCTCTT-ATGTTTGTGTGTAGC-TACCAA-TCAGTGGGGTACCA---GTT
gi|6 : ATATATTGTCTTCCAGACAATAATTCTATGAAGGGCTAC-AAGATCAAAATGATTTCAATTTCAAAGCGCTGCAGCTTTAGA-TAACCC-ATAATTAAGTCTA-T-AATTTTGA-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTTAGGTAAAC-GATAGACACTATGCCTTTAA
gi|7 : TCC-ACGA-TTTTGATAAAATTTTGCATATACCAAATAGGTGACAAA--ATC-AAAGATAAC-ACGA-AAAACC-ACGAAAAGT-T-CTCAGA-------------ACA--CTGGA-CACGAT-GATGA---TTACAAATTCTTC-CCCT-GT
gi|8 : aATATTGTCCTCCAGACAAT-ATTC-ATCGAGAGCTAA-AACGTCAAAATGATTT-GATTTCACAGCGC
gi|9 : agtctaAACTGG-TCCGC---------CTG-TTGAGTTACGCATCGACT-ACACTTGTGCG-AAG-CATCAA-TCAACGGGATACCA---GTTTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCACCAGTCGGCACTTACATGTACAAGCTACAAGGTCATAATG
Unaligned ( gi|16 ): AAACTGGTCCGCCTGTTGAGTTACGCA
Alignments
lowQualScore : 1 11 11 111 11111 111 22222222222 1 222 1 1 2222 3333 888888888888888
lowQualScore : 0 8 8 0 3 11 11 8 0 0 8 8888 0 3 0 22 8 11 0 6 1 6 111 6 77 33333 444 5 44444444444 5 5 1 5 6 555 4 777 0 0 0 88 1 0 0 1 0000 2222 8 8 555555555555555 0
lowQualScore : . . . . . .. .. . . . . .... . . . .. . .. . . . . ... . .. ..... ... . ........... . . . . . ... . ... . . . .. . . . . .... .... . . ............... .
lowQualScore : 0 0 0 8 2 88 00 0 8 8 0 8888 8 8 6 44 0 00 8 7 7 7 777 7 77 22222 000 7 33333333333 7 7 4 7 3 000 0 000 8 8 8 88 0 0 0 0 8888 0000 0 0 888888888888888 8
consensus : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAAGT-TATTCAGAATNTTTACAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTC--AATTT---TAACTGG-TAC-C---------CTG-TT-GACTT-CGCATCTCTT-ACGTTTGTGTGTA-G-CACCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTAC-AAGATCAAAATGATTTCAATTTCAAAGCGCTGNAGCTTTAGA-TAACTC-ATANTTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT------A---AA--GATAGACACTATGCCTTTAAA
Reference ( family-303 ) : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAAGT-TATTCAGAATNTTTACAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTC--AATTT---TAACTGG-TAC-C---------CTG-TT-GACTT-CGCATCTCTT-ACGTTTGTGTGTAAG-CACCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTAC-AAGATCAAAATGATTTCAATTTCAAAGCGCTGNAGCTTTAGA-TAACTC-ATANTTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT------G---AA--GATAGACACTATGCCTTTAAA
gi|1 : TAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTCTGCATGTTCCAAAAAGGTGGTGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAGGT-TATTCAGAATGTTTTCAAAC-ACA--TTGGA-TATGAT-AATAA---TAACAAAATAGTT-CCCT-TTTCTC--A--TT---TGACTGG-TAC-C---------CTG-TT-GACTT-TGCATCTCTT-ATGTTTATGTGTAAGCCACCAA-TCAGCTGGGTACCA---GCTTTATATATTGTCCTCCAGACAATAATTTTATAAAGGGCTAC-AAGGTGAAAATGATTTCAATTTCAAGGCACTGCAGTTTGAGA-TAACTC-ATGCTTGATACTACA-AATTTG-G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATCATGATGTCATTTTTTTAGGTAA---AA--GATAGACACTATGCCTTTAAA
gi|10 : tcACTGG-TCCGC---------CTG-TT-GAGTTACGCATCGGCT-ACACT-GTGTGTA-G-CATCAA-TCAACGGGATACCA---GTTT
gi|11 : -TTTTTGGAGTTC-TTTTTGCAAAAC-CTTGTGATGTCATTTTT---------------GATAGACATTATGCCTTTAAA
gi|12 : GTGTGTA-G-CACCAA-TCAACGGGGTACCAACTGTTTTag
gi|14 : gctactctcgaGTTTGTGTGTAA--CATCAA-TCAACGGGGTACCA---GTTT
gi|15 : tGTTTGTGTGTA-G-CACCAA-TCAAAGGGGTAACA---GTTTaa
gi|2 : TAAAGACATATGTATCTTAAGAATATTGGTA---TTTTGAAT-CTCCAA----GTGGCGAATAATT-AAAGATCAAAACTAGAAA-TT-ACAAAAAGT-TATTCAGAATCTTTATAAACAACA--T--GATTATGATAAATAA----TACAAAATAATT--CCT-GTTCTCCTAATTTAAAAAACTGGTTAC-CTCCTTCCATCTGTTT-GACTT-CACATCTCTTAATGTTC-TGTATAGT-CATCAACTCAGT-GGGTACCA---GTGTTATATATTGT-TTCCAGACGATAATTCTATAAAGGGCAAC--AGATCAAAATGATTTCAATTTAAAAGCGCTAACGCTTTTGATTAACTC-ATATTTGATACT--A-AATTT--T-TTTATG--ATTCTTTTTTGCAAAATAATTGTGAT-TCAATTTTT--------------AATAG-CTCTATGCCTTTTAA
gi|3 : GA-TA-GAT-AATA----TTA--AAATAATTTCCCT-GTTCTC--AATTT---TAACTGG-TAC-C----------TG-TTTGACTT-CACATCTCTT-ATGTTTCTGTGT------TT---TCAGTGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAAT--TATAAAGGGCTACAAAGATCAAAATGATTTCAATTTAAAAGCGTTGAAGCTTTAGA-TAACTCAATAATTGATACTA-ATAATTT--GTTTTTTGGAGTTC-CTTTTGCAAAAT-ATTGTGATGCCATTTTT---------------GATAGACACTATGCCTTTAAAgg
gi|4 : gaaAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCGTGTTCCAAAAAGGTGGCGAA--ATT-AAA---CATAACTAGAAAATT-ACAAAAAGTAAATTCAGAATCTTTATAAAC-ACA--TTGGA-TATGAT-AATAAATTTTACAAAATAAAT-CCCTGTTTCTC--AATTT---TAACTGG-TAC-C---------CTA-TT-GACTT-CACATCTCTT-A----TGTGTGTA----GCCGA-AAGGTGGGGTAACA---GTTTTGTATATTGTCTta
gi|5 : TAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCAAA--ATTTAAAGATCATAACTAGAAAATTAAAAAAAAGT-TA-TCAGAATGTGTACAAAC-ACACTTTGAA-TATGAT-AAAAA---TTACAAAATAATT-CCCT-TTTCTC--A--TT---TAGCTGG-TAC-C---------CTG-TT-GACTT-CACATCTCTT-ATGTTTGTGTGTAGC-TACCAA-TCAGTGGGGTACCA---GTT
gi|6 : ATATATTGTCTTCCAGACAATAATTCTATGAAGGGCTAC-AAGATCAAAATGATTTCAATTTCAAAGCGCTGCAGCTTTAGA-TAACCC-ATAATTAAGTCTA-T-AATTTTGA-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT------AGGTAAACGATAGACACTATGCCTTTAA
gi|7 : TCC-ACGA-TTTTGATAAAATTTTGCATATACCAAATAGGTGACAAA--ATC-AAAGATAAC-ACGA-AAAACC-ACGAAAAGT-T-CTCAGA-------------ACA--CTGGA-CACGAT-GATGA---TTACAAATTCTTC-CCCT-GT
gi|8 : aATATTGTCCTCCAGACAAT-ATTC-ATCGAGAGCTAA-AACGTCAAAATGATTT-GATTTCACAGCGC
gi|9 : agtctaAACTGG-TCCGC---------CTG-TT-GAGTTACGCATCGACT-ACACTTGTGCG-AAG-CATCAA-TCAACGGGATACCA---GTTTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCACCAGTCGGCACTTACATGTACAAGCTACAAGGTCATAATG
Unaligned ( gi|16 ): AAACTGGTCCGCCTGTTGAGTTACGCA
Alignments
lowQualScore : 1 11 11 111 11111 111 22222222222 1 1111 1 1 2222 3333 777777777777777
lowQualScore : 0 8 8 0 3 11 11 8 0 0 8 8888 0 3 0 22 8 11 0 6 1 6 111 6 77 33333 444 5 44444444444 5 5 1 5 6 3333 4 777 0 88 0 8 1 0 0 1 0000 2222 8 8 555555555555555 0
lowQualScore : . . . . . .. .. . . . . .... . . . .. . .. . . . . ... . .. ..... ... . ........... . . . . . .... . ... . .. . . . . . . .... .... . . ............... .
lowQualScore : 0 0 0 8 2 88 00 0 8 8 0 8888 8 8 6 44 0 00 8 7 7 7 777 7 77 22222 000 7 33333333333 7 7 4 7 3 5555 0 000 8 88 8 0 0 0 0 0 8888 0000 0 0 000000000000000 8
consensus : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAAGT-TATTCAGAATNTTTACAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTC--AATTT---TAACTGG-TAC-C---------CTG-TT-GACTT-CGCATCTCTT-ACGTTTGTGTGTAG--C-ACCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTACAA-GATCAAAATGATTTCAATTTCAAAGCGCTGNAGCTTTAGA-TAACTC-ATANTTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT------A---AA--GATAGACACTATGCCTTTAAA
Reference ( family-303 ) : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAAGT-TATTCAGAATNTTTACAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTC--AATTT---TAACTGG-TAC-C---------CTG-TT-GACTT-CGCATCTCTT-ACGTTTGTGTGTAG--C-ACCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTACAA-GATCAAAATGATTTCAATTTCAAAGCGCTGNAGCTTTAGA-TAACTC-ATANTTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT------A---AA--GATAGACACTATGCCTTTAAA
gi|1 : TAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTCTGCATGTTCCAAAAAGGTGGTGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAGGT-TATTCAGAATGTTTTCAAAC-ACA--TTGGA-TATGAT-AATAA---TAACAAAATAGTT-CCCT-TTTCTC--A--TT---TGACTGG-TAC-C---------CTG-TT-GACTT-TGCATCTCTT-ATGTTTATGTGTAAGCC-ACCAA-TCAGCTGGGTACCA---GCTTTATATATTGTCCTCCAGACAATAATTTTATAAAGGGCTACAA-GGTGAAAATGATTTCAATTTCAAGGCACTGCAGTTTGAGA-TAACTC-ATGCTTGATACTACA-AATTTG-G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATCATGATGTCATTTTTTTAGGTAA---AA--GATAGACACTATGCCTTTAAA
gi|10 : tcACTGG-TCCGC---------CTG-TT-GAGTTACGCATCGGCT-ACACT-GTGTGTAG--C-ATCAA-TCAACGGGATACCA---GTTT
gi|11 : -TTTTTGGAGTTC-TTTTTGCAAAAC-CTTGTGATGTCATTTTT---------------GATAGACATTATGCCTTTAAA
gi|12 : GTGTGTAG--C-ACCAA-TCAACGGGGTACCAACTGTTTTag
gi|14 : gctactctcgaGTTTGTGTGTAA--C-ATCAA-TCAACGGGGTACCA---GTTT
gi|15 : tGTTTGTGTGTAG--C-ACCAA-TCAAAGGGGTAACA---GTTTaa
gi|2 : TAAAGACATATGTATCTTAAGAATATTGGTA---TTTTGAAT-CTCCAA----GTGGCGAATAATT-AAAGATCAAAACTAGAAA-TT-ACAAAAAGT-TATTCAGAATCTTTATAAACAACA--T--GATTATGATAAATAA----TACAAAATAATT--CCT-GTTCTCCTAATTTAAAAAACTGGTTAC-CTCCTTCCATCTGTTT-GACTT-CACATCTCTTAATGTTC-TGTATAGT-C-ATCAACTCAGT-GGGTACCA---GTGTTATATATTGT-TTCCAGACGATAATTCTATAAAGGGCAAC-A-GATCAAAATGATTTCAATTTAAAAGCGCTAACGCTTTTGATTAACTC-ATATTTGATACT--A-AATTT--T-TTTATG--ATTCTTTTTTGCAAAATAATTGTGAT-TCAATTTTT------A--------ATAG-CTCTATGCCTTTTAA
gi|3 : GA-TA-GAT-AATA----TTA--AAATAATTTCCCT-GTTCTC--AATTT---TAACTGG-TAC-C----------TG-TTTGACTT-CACATCTCTT-ATGTTTCTGTGTTT----------TCAGTGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATT--ATAAAGGGCTACAAAGATCAAAATGATTTCAATTTAAAAGCGTTGAAGCTTTAGA-TAACTCAATAATTGATACTA-ATAATTT--GTTTTTTGGAGTTC-CTTTTGCAAAAT-ATTGTGATGCCATTTTT---------------GATAGACACTATGCCTTTAAAgg
gi|4 : gaaAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCGTGTTCCAAAAAGGTGGCGAA--ATT-AAA---CATAACTAGAAAATT-ACAAAAAGTAAATTCAGAATCTTTATAAAC-ACA--TTGGA-TATGAT-AATAAATTTTACAAAATAAAT-CCCTGTTTCTC--AATTT---TAACTGG-TAC-C---------CTA-TT-GACTT-CACATCTCTT-A----TGTGTGTAG-----CCGA-AAGGTGGGGTAACA---GTTTTGTATATTGTCTta
gi|5 : TAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCAAA--ATTTAAAGATCATAACTAGAAAATTAAAAAAAAGT-TA-TCAGAATGTGTACAAAC-ACACTTTGAA-TATGAT-AAAAA---TTACAAAATAATT-CCCT-TTTCTC--A--TT---TAGCTGG-TAC-C---------CTG-TT-GACTT-CACATCTCTT-ATGTTTGTGTGTAG--CTACCAA-TCAGTGGGGTACCA---GTT
gi|6 : ATATATTGTCTTCCAGACAATAATTCTATGAAGGGCTACAA-GATCAAAATGATTTCAATTTCAAAGCGCTGCAGCTTTAGA-TAACCC-ATAATTAAGTCTA-T-AATTTTGA-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT------AGGTAAACGATAGACACTATGCCTTTAA
gi|7 : TCC-ACGA-TTTTGATAAAATTTTGCATATACCAAATAGGTGACAAA--ATC-AAAGATAAC-ACGA-AAAACC-ACGAAAAGT-T-CTCAGA-------------ACA--CTGGA-CACGAT-GATGA---TTACAAATTCTTC-CCCT-GT
gi|8 : aATATTGTCCTCCAGACAAT-ATTC-ATCGAGAGCTAAAA-CGTCAAAATGATTT-GATTTCACAGCGC
gi|9 : agtctaAACTGG-TCCGC---------CTG-TT-GAGTTACGCATCGACT-ACACTTGTGCGAAG--C-ATCAA-TCAACGGGATACCA---GTTTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCACCAGTCGGCACTTACATGTACAAGCTACAAGGTCATAATG
Unaligned ( gi|16 ): AAACTGGTCCGCCTGTTGAGTTACGCA
Alignments
lowQualScore : 1 11 11 111 11111 111 22222222222 1 1111 1 1 2222 3333 777777777777777
lowQualScore : 0 8 8 0 3 11 11 8 0 0 8 8888 0 3 0 22 8 11 0 6 1 6 111 6 77 33333 444 5 44444444444 5 5 1 5 6 3333 4 777 0 88 0 8 1 0 0 1 0000 2222 8 8 555555555555555 0
lowQualScore : . . . . . .. .. . . . . .... . . . .. . .. . . . . ... . .. ..... ... . ........... . . . . . .... . ... . .. . . . . . . .... .... . . ............... .
lowQualScore : 0 0 0 8 2 88 00 0 8 8 0 8888 8 8 6 44 0 00 8 7 7 7 777 7 77 22222 000 7 33333333333 7 7 4 7 3 5555 0 000 8 88 8 0 0 0 0 0 8888 0000 0 0 000000000000000 8
consensus : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAAGT-TATTCAGAATNTTTACAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTC--AATTT---TAACTGG-TAC-C---------CTG-TT-GACTT-CGCATCTCTT-ACGTTTGTGTGTAG--C-ACCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTACAA-GATCAAAATGATTTCAATTTCAAAGCGCTGNAGCTTTAGA-TAACTC-ATANTTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT------A---AA--GATAGACACTATGCCTTTAAA
Reference ( family-303 ) : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAAGT-TATTCAGAATNTTTACAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTC--AATTT---TAACTGG-TAC-C---------CTG-TT-GACTT-CGCATCTCTT-ACGTTTGTGTGTAG--C-ACCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTACAA-GATCAAAATGATTTCAATTTCAAAGCGCTGNAGCTTTAGA-TAACTC-ATANTTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT------A---AA--GATAGACACTATGCCTTTAAA
gi|1 : TAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTCTGCATGTTCCAAAAAGGTGGTGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAGGT-TATTCAGAATGTTTTCAAAC-ACA--TTGGA-TATGAT-AATAA---TAACAAAATAGTT-CCCT-TTTCTC--A--TT---TGACTGG-TAC-C---------CTG-TT-GACTT-TGCATCTCTT-ATGTTTATGTGTAAGCC-ACCAA-TCAGCTGGGTACCA---GCTTTATATATTGTCCTCCAGACAATAATTTTATAAAGGGCTACAA-GGTGAAAATGATTTCAATTTCAAGGCACTGCAGTTTGAGA-TAACTC-ATGCTTGATACTACA-AATTTG-G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATCATGATGTCATTTTTTTAGGTAA---AA--GATAGACACTATGCCTTTAAA
gi|10 : tcACTGG-TCCGC---------CTG-TT-GAGTTACGCATCGGCT-ACACT-GTGTGTAG--C-ATCAA-TCAACGGGATACCA---GTTT
gi|11 : -TTTTTGGAGTTC-TTTTTGCAAAAC-CTTGTGATGTCATTTTT---------------GATAGACATTATGCCTTTAAA
gi|12 : GTGTGTAG--C-ACCAA-TCAACGGGGTACCAACTGTTTTag
gi|14 : gctactctcgaGTTTGTGTGTAA--C-ATCAA-TCAACGGGGTACCA---GTTT
gi|15 : tGTTTGTGTGTAG--C-ACCAA-TCAAAGGGGTAACA---GTTTaa
gi|2 : TAAAGACATATGTATCTTAAGAATATTGGTA---TTTTGAAT-CTCCAA----GTGGCGAATAATT-AAAGATCAAAACTAGAAA-TT-ACAAAAAGT-TATTCAGAATCTTTATAAACAACA--T--GATTATGATAAATAA----TACAAAATAATT--CCT-GTTCTCCTAATTTAAAAAACTGGTTAC-CTCCTTCCATCTGTTT-GACTT-CACATCTCTTAATGTTC-TGTATAGT-C-ATCAACTCAGT-GGGTACCA---GTGTTATATATTGT-TTCCAGACGATAATTCTATAAAGGGCAAC-A-GATCAAAATGATTTCAATTTAAAAGCGCTAACGCTTTTGATTAACTC-ATATTTGATACT--A-AATTT--T-TTTATG--ATTCTTTTTTGCAAAATAATTGTGAT-TCAATTTTT------A--------ATAG-CTCTATGCCTTTTAA
gi|3 : GA-TA-GAT-AATA----TTA--AAATAATTTCCCT-GTTCTC--AATTT---TAACTGG-TAC-C----------TG-TTTGACTT-CACATCTCTT-ATGTTTCTGTGTTT----------TCAGTGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATT--ATAAAGGGCTACAAAGATCAAAATGATTTCAATTTAAAAGCGTTGAAGCTTTAGA-TAACTCAATAATTGATACTA-ATAATTT--GTTTTTTGGAGTTC-CTTTTGCAAAAT-ATTGTGATGCCATTTTT---------------GATAGACACTATGCCTTTAAAgg
gi|4 : gaaAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCGTGTTCCAAAAAGGTGGCGAA--ATT-AAA---CATAACTAGAAAATT-ACAAAAAGTAAATTCAGAATCTTTATAAAC-ACA--TTGGA-TATGAT-AATAAATTTTACAAAATAAAT-CCCTGTTTCTC--AATTT---TAACTGG-TAC-C---------CTA-TT-GACTT-CACATCTCTT-A----TGTGTGTAG-----CCGA-AAGGTGGGGTAACA---GTTTTGTATATTGTCTta
gi|5 : TAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCAAA--ATTTAAAGATCATAACTAGAAAATTAAAAAAAAGT-TA-TCAGAATGTGTACAAAC-ACACTTTGAA-TATGAT-AAAAA---TTACAAAATAATT-CCCT-TTTCTC--A--TT---TAGCTGG-TAC-C---------CTG-TT-GACTT-CACATCTCTT-ATGTTTGTGTGTAG--CTACCAA-TCAGTGGGGTACCA---GTT
gi|6 : ATATATTGTCTTCCAGACAATAATTCTATGAAGGGCTACAA-GATCAAAATGATTTCAATTTCAAAGCGCTGCAGCTTTAGA-TAACCC-ATAATTAAGTCTA-T-AATTTTGA-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT------AGGTAAACGATAGACACTATGCCTTTAA
gi|7 : TCC-ACGA-TTTTGATAAAATTTTGCATATACCAAATAGGTGACAAA--ATC-AAAGATAAC-ACGA-AAAACC-ACGAAAAGT-T-CTCAGA-------------ACA--CTGGA-CACGAT-GATGA---TTACAAATTCTTC-CCCT-GT
gi|8 : aATATTGTCCTCCAGACAAT-ATTC-ATCGAGAGCTAAAA-CGTCAAAATGATTT-GATTTCACAGCGC
gi|9 : agtctaAACTGG-TCCGC---------CTG-TT-GAGTTACGCATCGACT-ACACTTGTGCGAAG--C-ATCAA-TCAACGGGATACCA---GTTTa
blockSeqs : T T A G AA TA T A AAAT C AT A CT T T A ATT T GT CTAAT AAA T CTCCTTCCAT T T A A C TC C ACT CT A A T A T AAT TGA T A TAGGTAAAC
blockSeqs : . . . G AA . . . TAT C AT . . . T . . . G AAT . . GC . . A . T CT . . CT . A . . A AT GT . . TA
blockSeqs : . . . A AT . . . TA G AC . . . T . . . G AAT . . GC . . . . T C . . C . C . . A A T . . .
blockSeqs : . . . . . . . TC . . . . . C . . . T A . . C . . . . T C . . . . . . .
blockSeqs : . . . . . G . C . . . . C C . .
blockSeqs : . C . . . . . C . .
blockSeqs : C . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : TAC* AAT** C*** TA*************
originalCons : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAAGT-TATTCAGAATNTTTACAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTC--AATTT---TAACTGG-TAC-C---------CTG-TT-GACTT-CGCATCTCTT-ACGTTTGTGTGTAG--C-ACCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTACAA-GATCAAAATGATTTCAATTTCAAAGCGCTGNAGCTTTAGA-TAACTC-ATANTTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT------A---AA--GATAGACACTATGCCTTTAAA
finalCons : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--ATT-AAAGATCATAACTAGAAAATT-ACAAAAAGTTAC-TCAGAATNTTTACAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTCAAT--TT---TAACTGG-TAC-C---------CTG-TT-GACTT-CGCATCTCTT-ACGTTTGTGTGTAGC---ACCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTACAA-GATCAAAATGATTTCAATTTCAAAGCGCTGNAGCTTTAGA-TAACTC-ATANTTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTTA-------------GATAGACACTATGCCTTTAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCACCAGTCGGCACTTACATGTACAAGCTACAAGGTCATAATG
Unaligned ( gi|16 ): AAACTGGTCCGCCTGTTGAGTTACGCA
Alignments
lowQualScore : 1 11 1111 11 111 11111 111 22222222222 1 1111 1 1 2222 3333 66666666666666666
lowQualScore : 0 8 8 0 3 11 11 8 0 0 8 4444 0 3 0 22 8 11 0 6 1 6 111 6 77 33333 444 5 44444444444 5 5 1 5 6 3333 4 777 0 0 0 88 1 0 0 1 0000 2222 8 8 66666666666666666 0
lowQualScore : . . . . . .. .. . . . . .... . . . .. . .. . . . . ... . .. ..... ... . ........... . . . . . .... . ... . . . .. . . . . .... .... . . ................. .
lowQualScore : 0 0 0 8 2 88 00 0 8 8 0 6666 8 8 6 44 0 00 8 7 7 7 777 7 77 22222 000 7 33333333333 7 7 4 7 3 5555 0 000 8 8 8 88 0 0 0 0 8888 0000 0 0 22222222222222222 8
consensus : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--A-TTAAAGATCATAACTAGAAAATT-ACAAAAAGT-TATTCAGAATNTTTACAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTC--AATTT---TAACTGG-TAC-C---------CTG-TT-GACTT-CGCATCTCTT-ACGTTTGTGTGTAG--C-ACCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTAC-AAGATCAAAATGATTTCAATTTCAAAGCGCTGNAGCTTTAGA-TAACTC-ATANTTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT--------A-------GATAGACACTATGCCTTTAAA
Reference ( family-303 ) : NNTAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCGAA--A-TTAAAGATCATAACTAGAAAATT-ACAAAAAGT-TACTCAGAATNTTTACAAAC-ACA--TTGGA-TATGAT-AATAA---TTACAAAATAATT-CCCT-NTTCTC--AATTT---TAACTGG-TAC-C---------CTG-TT-GACTT-CGCATCTCTT-ACGTTTGTGTGTAG--C-ACCAA-TCAGCGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAATTCTATAAAGGGCTAC-AAGATCAAAATGATTTCAATTTCAAAGCGCTGNAGCTTTAGA-TAACTC-ATANTTGATACTA-A-AATTT--G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT--------A-------GATAGACACTATGCCTTTAAA
gi|1 : TAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTCTGCATGTTCCAAAAAGGTGGTGAA--A-TTAAAGATCATAACTAGAAAATT-ACAAAAGGT-TATTCAGAATGTTTTCAAAC-ACA--TTGGA-TATGAT-AATAA---TAACAAAATAGTT-CCCT-TTTCTC--A--TT---TGACTGG-TAC-C---------CTG-TT-GACTT-TGCATCTCTT-ATGTTTATGTGTAAGCC-ACCAA-TCAGCTGGGTACCA---GCTTTATATATTGTCCTCCAGACAATAATTTTATAAAGGGCTAC-AAGGTGAAAATGATTTCAATTTCAAGGCACTGCAGTTTGAGA-TAACTC-ATGCTTGATACTACA-AATTTG-G-TTTTTGGAGTTC-TTTTTGCAAAAT-ATCATGATGTCATTTTTTTAGGTAAAA-------GATAGACACTATGCCTTTAAA
gi|10 : tcACTGG-TCCGC---------CTG-TT-GAGTTACGCATCGGCT-ACACT-GTGTGTAG--C-ATCAA-TCAACGGGATACCA---GTTT
gi|11 : -TTTTTGGAGTTC-TTTTTGCAAAAC-CTTGTGATGTCATTTTT-----------------GATAGACATTATGCCTTTAAA
gi|12 : GTGTGTAG--C-ACCAA-TCAACGGGGTACCAACTGTTTTag
gi|14 : gctactctcgaGTTTGTGTGTAA--C-ATCAA-TCAACGGGGTACCA---GTTT
gi|15 : tGTTTGTGTGTAG--C-ACCAA-TCAAAGGGGTAACA---GTTTaa
gi|2 : TAAAGACATATGTATCTTAAGAATATTGGTA---TTTTGAAT-CTCCAA----GTGGCGAATAA-TTAAAGATCAAAACTAGAAA-TT-ACAAAAAGT-TATTCAGAATCTTTATAAACAACA--T--GATTATGATAAATAA----TACAAAATAATT--CCT-GTTCTCCTAATTTAAAAAACTGGTTAC-CTCCTTCCATCTGTTT-GACTT-CACATCTCTTAATGTTC-TGTATAGT-C-ATCAACTCAGT-GGGTACCA---GTGTTATATATTGT-TTCCAGACGATAATTCTATAAAGGGCAAC--AGATCAAAATGATTTCAATTTAAAAGCGCTAACGCTTTTGATTAACTC-ATATTTGATACT--A-AATTT--T-TTTATG--ATTCTTTTTTGCAAAATAATTGTGAT-TCAATTTTT--------A--------ATAG-CTCTATGCCTTTTAA
gi|3 : GA-TA-GAT-AATA----TTA--AAATAATTTCCCT-GTTCTC--AATTT---TAACTGG-TAC-C----------TG-TTTGACTT-CACATCTCTT-ATGTTTCTGTGTTT----------TCAGTGGGGTACCA---GTTTTATATATTGTCTTCCAGACAATAAT--TATAAAGGGCTACAAAGATCAAAATGATTTCAATTTAAAAGCGTTGAAGCTTTAGA-TAACTCAATAATTGATACTA-ATAATTT--GTTTTTTGGAGTTC-CTTTTGCAAAAT-ATTGTGATGCCATTTTT-----------------GATAGACACTATGCCTTTAAAgg
gi|4 : gaaAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCGTGTTCCAAAAAGGTGGCGAA--A-TTAAA---CATAACTAGAAAATT-ACAAAAAGTAAATTCAGAATCTTTATAAAC-ACA--TTGGA-TATGAT-AATAAATTTTACAAAATAAAT-CCCTGTTTCTC--AATTT---TAACTGG-TAC-C---------CTA-TT-GACTT-CACATCTCTT-A----TGTGTGTAG-----CCGA-AAGGTGGGGTAACA---GTTTTGTATATTGTCTta
gi|5 : TAAAGACATA-GTGTCT-AAGA-TATTGGTAAAATTTTGCATGTTCCAAAAAGGTGGCAAA--ATTTAAAGATCATAACTAGAAAATTAAAAAAAAGT-TA-TCAGAATGTGTACAAAC-ACACTTTGAA-TATGAT-AAAAA---TTACAAAATAATT-CCCT-TTTCTC--A--TT---TAGCTGG-TAC-C---------CTG-TT-GACTT-CACATCTCTT-ATGTTTGTGTGTAG--CTACCAA-TCAGTGGGGTACCA---GTT
gi|6 : ATATATTGTCTTCCAGACAATAATTCTATGAAGGGCTAC-AAGATCAAAATGATTTCAATTTCAAAGCGCTGCAGCTTTAGA-TAACCC-ATAATTAAGTCTA-T-AATTTTGA-TTTTTGGAGTTC-TTTTTGCAAAAT-ATTGTGATGTCATTTTTT--------AGGTAAACGATAGACACTATGCCTTTAA
gi|7 : TCC-ACGA-TTTTGATAAAATTTTGCATATACCAAATAGGTGACAAA--A-TCAAAGATAAC-ACGA-AAAACC-ACGAAAAGT-T-CTCAGA-------------ACA--CTGGA-CACGAT-GATGA---TTACAAATTCTTC-CCCT-GT
gi|8 : aATATTGTCCTCCAGACAAT-ATTC-ATCGAGAGCTAA-AACGTCAAAATGATTT-GATTTCACAGCGC
gi|9 : agtctaAACTGG-TCCGC---------CTG-TT-GAGTTACGCATCGACT-ACACTTGTGCGAAG--C-ATCAA-TCAACGGGATACCA---GTTTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCACCAGTCGGCACTTACATGTACAAGCTACAAGGTCATAATG
Unaligned ( gi|16 ): AAACTGGTCCGCCTGTTGAGTTACGCA