lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111 1111111111111111111
lowQualScore : 111 111 1 11111 222 1111 222 1 1 2222 11 1 1 11111111111111111111111111111111111111111111111111111111111111111 2222222222 222222222222222222 111 6666666666 11 111 333333333 1 2222222222222222222 1111 11 777777777777777777777777777777777 11111 1 222 55555555555555555555 11 222222 1
lowQualScore : 6 1 444 0 22 1 222 1 0 5 0 1 66666 000 1111 2 22 0 99 1 8 6 44 8 555 3 7 1111 1 6 1 22 0 8 4 8 55555555555555555555555555555555555555555555555555555555555555555 6 9999999999 1 999999999999999999 0 222 77 5555555555 6 00 000 5 5 1 1 5 3 222222222 6 0 3 99 6 3333333333333333333 6666 5 3 11 666666666666666666666666666666666 0 77777 0 777 55555555555555555555 77 99 999999 5 0 2 6
lowQualScore : . . ... . .. . ... . . . . . ..... ... .... . .. . .. . . . .. . ... . . .... . . . .. . . . . ................................................................. . .......... . .................. . ... .. .......... . .. ... . . . . . . ......... . . . .. . ................... .... . . .. ................................. . ..... . ... .................... .. .. ...... . . . .
lowQualScore : 4 3 333 2 55 6 333 8 9 7 0 9 99999 666 7777 0 99 4 99 7 0 7 66 0 000 2 0 2222 2 0 2 00 0 0 5 0 22222222222222222222222222222222222222222222222222222222222222222 7 2222222222 4 666666666666666666 6 777 99 0000000000 3 11 000 7 7 7 0 0 2 222222222 7 8 3 22 7 3333333333333333333 2222 2 0 00 444444444444444444444444444444444 8 66666 0 000 22222222222222222222 55 22 333333 4 6 0 0
consensus : CGGGTGCCAACTATAGTC--ACTAAAGTAAAACTATAGTT--CACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-AC-GA-GTCTAGTCGACNATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA-T-ACAGAGCATAGATTGATTTTGAAGAATA----TATGACGAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACTTATTT---N----CG-C--------TA--TTT-TTT-----------C--C--------CA-TG------GCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCACTT------------GGAG--AGCAAGCTCGATAATTGCAA--TA---AAAA---AAAACTACTTGAAATT---AAA-TGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACGGTTAACG------AGAG-ACAAATTGTAG--TTGTTC-AATTT---C-G------------TGTAAC---TCTTCAATGCCGCCATCGAAAA--TACGT-----CG-N--AAATTG-AC------AATTTT-ACAA--TTGATCTGTCGAAGACGGCCATAT-TTTT-----------ATTTCTGAACTAAACTAAANTTTGTTCACGTG--CA-----CTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
Reference ( gi|4 ) : CGGGTGCCAACTATAGTC--ACTAAAGTAAAACTATAGTT--CACCCGAACGTGCTCTAGTTTGCCAG---AAGTG-G-AC-GA-GTCTAGTCGACTATTGTTAACTATTCTCTCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA---ACAGAGCTTAGATTGATTTTGAAGAATA----TATGACAAAGATTACAAAGGGGTGCGTGTTTTCTG-TAATCT-TGG-TTCATTTCACATATTT---T----CA-C--------TA--TTTATTT-----------C--C--------CT-TA------GCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCACCT------------GGGG--AGCAAGCTTGATAATTGCAA--TA---AAAAGAGAAAGCTACTTAGAATT---AAA-TGATTCGTAAT-TTCGGGGAAATTTGCGATCTCGGAGAACACGGGTAACG------AGGG-ACCAGTTGTAG--TTGTTC-AATTT------------------TGTAAT---TTTTCAATGCCACCATCGAAAA--TACAT-----TG-G--AAACTGCAC------AATTTTCACAA--TCGATCTGTAGAAGACGGTCATA--TTTT-----------ATTTCTGCCCTAAACTAAACGTTGTTCACGTG--CT-----CTAGTTGACTATACATGCGTACACTAAACCTCCGCACTAGGC
gi|2 : CGGGTGCCAACTATATTC--ACTAAAGTA---------------CTCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-AC-GA-GACTAATCGACTATTGTTAACTATTCTCCCTCGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAATACAGGTTCT-GCA---ACAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGTGTGTTTTCTA-TAATCA-TGG-TTCATTACACATATTT---A----CA-CCGCTGTTTTA--TTT-TTT-----------C--C--------CA-TG------GCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCACTT------------GGAG--AGCAAGCTTAATAATTGCAACTTA---AAAAAAAAAAACTACTTGAAATT---AAA-TGATTCGTAGT-TTCGGGGAAATTTGCGATCCCTGAGAACACGGTTAACG------AGAG-ACAAATTGTAG--TTGTTCAAATTTTGCTCGTACATACGTACATGTAAC---TATTCAATTCCGCTATCAAAAA--TACGT-----TG-C--AAATTTGAC------AATTTT-ACAA--TTAATCCGTTAAAGACGGTCATA--TTGT-----------ATTTCTGAACTAAACTAAACCTTGTTCACGTG--CA-----CTAGTTGACTAGACATGCGTACACTAAAGTTCTGCACTAGA
gi|2 : ggagttCGCGTGTTAACTATAGT----CTAGTGCAGAACTTTAGTG--TAC----GCATG-TCTAGTCAACTAGTGCACGTG-A-AC-AAGGTTTAGTtatagttaacacgcgaactccaccta
gi|1 : ggagttcgggtgccaactatattcactaaagtactcgaacgtgctttagtttgccggaagtgaacgagactaatcgactattgttaactattctccctcgtactagtggtctagttcaagatggcggacaaaatgtaaaatacaggttctgcaacagagcatagattgattttgaagaatatatgacaaaaattacaaaggggtgtgtgttttctataatcatggttcattacacatatttacaccgctgttttattttttcccatggcgtggtaaaatgcaacaatcgagttcttcacttggagagcaagcttaataattgcaacttaaaaaaaaaaaactacttgaaattaaatgattcgtagtttcggggaaatttgcgatccctgagaacacggttaacgagagacaaattgtagttgttcaaattttgctcgtacatacgtacatgtaactattcaattccgctatcaaaaatacgttgcaaatttgacaattttacaattaatccgttaaagacggtcatattgtatttctgaactaaCGGGTGCCAACTATAGTC--ACTAAAGTAAAACTGTAGTT--CACCCGAACATGCTTTAGCTTTCC-G---AAGTG-A-AT-AA-GTCTAGTTGAAAATTTTGATCTATTCTCACATGTACTAGTGGT-CTTGTTCAAGATGGCA-GACAGTATGTGAAATGTAGGTTCT-GCACT-ACA-AGCATAGATTAATTTTGAAGAATA----TATGACGAAAATTTCAAAGGGATGCATGTTTTCTA-TAATCT-TAG-TTCATTACACTCATTT---A----CGTC--------CA--TTGTTTT-----------C--CAATTAATTCT-TATCAATGGCATGGTAAAA-TGCA----------ACAATCAAGTTCTTTACTT------------GGAG--AGCAAGCTAAATAATGGCAA--TA---AAAA-----AGCTAGTTGAAATT---AAA-TGATTCGTAAT-TTTGGGAAAATTTGTGATTCTGGAAAACACGATTAACA--------TG-ACAAATGGAAG--TTGTTC-AATTTATGCAAGTACATA-----TGTAAT---TCTTCAATGCTGCCATCGAAAA--TATGT-----TGTA--AAATTG-AC------AATTCT-ACAA--TTGATCTGTCGAAGACGGCCATAT-TTTT-----------ATTTCTGAACTAAACTAAACTTTGTTCATGTG--CA-----CTAGTTAACTAGACATGCGGACACTAAACTTCTGCACTAGAaactccaccta
gi|1 : cggagttCGGGTG--AACTACAGTTTTACTTTAGTGA--CTATAGTTGGCACCCGAACtatagttaacacgcgaactccaccca
gi|1 : cggaCGCGTGTTAACTATAGT----CTAGTGCAGAAGTTTAGT----GTCCG--CATG-TCTAGTTAACTAGTGCACATG-A-ACAAA-GTTTAGTaacatgctttagctttccgaagtgaataagtctagttgaaaattttgatctattctcacatgtactagtggtcttgttcaagatggcagacagtatgtgaaatgtaggttctgcactacaagcatagattaattttgaagaatatatgacgaaaatttcaaagggatgcatgttttctataatcttagttcattacactcatttacgtccattgttttccaattaattcttatcaatggcatggtaaaatgcaacaatcaagttctttacttggagagcaagctaaataatggcaataaaaaagctagttgaaattaaatgattcgtaattttgggaaaatttgtgattctggaaaacacgattaacatgacaaatggaagttgttcaatttatgcaagtacatatgtaattcttcaatgctgccatcgaaaatatgttgtaaaattgacaattctacaattgatctgtcgaagacggccatatttttatttctgaactaaactaaactttgttcatgtgcactagttaactagacatgcggacactaaacttctgcactagactatagttaacacgcgaactccaccca
gi|6 : cggagttcgggtgccaactatagtcactaaagtaaaactgtagttcacccgaacatgctttagctttccgaagtgaataagtctagttgaaaattttgatctattctcacatgtactagtggtcttgttcaagatggcagacagtatgtgaaatgtaggttctgcactacaagcatagattaattttgaagaatatatgacgaaaatttcaaagggatgcatgttttctataatcttagttcattacactcatttacgtccattgttttccaattaattcttatcaatggcatggtaaaatgcaacaatcaagttctttacttggagagcaagctaaataatggcaataaaaaagctagttgaaattaaatgattcgtaattttgggaaaatttgtgattctggaaaacacgattaacatgacaaatggaagttgttcaatttatgcaagtacatatgtaattcttcaatgctgccatcgaaaatatgttgtaaaattgacaattctacaattgatctgtcgaagacggccatatttttatttctgaactaaCGGGTGCCAACTATAGTC--ACTAAAGTAAAACTATAATT--CACCCGAACGTGTTTTAGTTTGCC---------------------------GACTATTGTTAAATATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAGATGTAAAACGCAGGTTCT-GCA---ACAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTG-TGATCT-TGG-TTCATTACACATATTT---T----TA-C--------TA--CTaactccaccca
gi|6 : tCGGGTG--AATTATAGTTTTACTTTAGTGA--CTATAGTTGGCACCCGAgttt
gi|11 : CGGGTGCCAACTA-----------AAGTAAAACTATAGTT--CACACGAACGTAATTTAGTTTGTCAG---AAGTG-A-AC-GA-GTCTAGTCGACTATTATCAAATATTCTCAGATG---TAGTGGaacgtgttttagtttgccgactattgttaaatattctcccacgtactagtggtctagttcaagatggcggacaagatgtaaaacgcaggttctgcaacagagcatagattgattttgaagaatatatgacaaaaattacaaaggggtgcgtgttttctgtgatcttggttcattacacatatttttactactgttt
gi|16 : gtggagttGGTGTCAACTATAGTC--ACTAAAGTAAAACTTTAGTT--CACC
gi|8 : CAACTA--ATC--ACTAA-GTACAACTATAGT---CACCCTAAC-TGCT-TAGTTT-CCGG---AAGGG-GCAC--A-G-CTAGTTCACTAT-GTTAACT-TTCTCCCA--TACTCATAATGCTAGTTCAAGATCGTATGACAAAATGTAAAACCCAGTTTCTCGCA---ACAACGCATAGA
gi|3 : ACTATAGTC--ACAAAAGTAAAACTAT
gi|5 : tgttaactatatacAGTT--CACACAAACGTGCT-TAGTTTGCCGG---AAGTGTC-AC-G--GTTTAGTCGAAAAATACTAACTA-TCCCCAACGTACTAGttatcactaaatcgagatctactcgaagattgcatcccccgggccaaagatggcggacaaagtgtgaaaattagtttctcaattacaagcagagattaaatttgaagaaaacaattatgactcaaattgcagaggtgtgcacgtcttcaactaatatacggcttcattcttttcggccactgtttgtctaaagtaagtaacccagtgtggtaaagtacagtgttaaatcaaaatcgaagtcctcatctctcaaagtgctaggagagtgagctcaatgattgcaatcaaaaactatttcaaattaaacgatttataatgttgggggaaatttttgttttagaacaaggtacgttatccagggaacaagttgtaatcatttgatttatgctagctcatctgtaaatcttcaactttgtcatcgacaatacatatatacagctaaattgacaaaaaaaatttcaactgatctgtagcagacggtcatttttaaaaaaaaaaaaaaattagaattcgttcgcgtgcacttgttgactagacatacggaaattaaactcccgcgcta
gi|14 : taAGTT--CACACAAACGTGCTTTAGTTTGCCGG---AAGTGTC-AC-GA-GTTTAGTCGAAAATTACTAACTATTCCCCAACGTAATAGgacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagtcattgcacttatttacgccacgtttaccaatggtgtggtaaaactgcaacaatcgagtttttcacttgatttagctagcataattgcaatatttaaaaaaaactgaatttgaaaatgattcgtaatttcggggaaatctgcagccccggggaacacgtttattcgtggacaaatatttaatgttcagtttatgca
gi|17 : ttaGTGGT-CTAGTTCAAGATGGCG-GACAAAGTGT
gi|3 : AAGATGGCG-GACAAAGTGTGAAAATTAGTTTCT--CAATTACA-AGCAGAGATTAAATTTGAAGAAAACAATTATGACTCAAATTGCAGAGGTGTGCACGTCTTCAACTAATATACGGCTTCATTC------TTT---TCGGCCA-C--------TG--TTTGTCTAAAGTAAGTAAC--C--------C---A------GTGTGGTAAAG-TACAGTGTTAAATCAAAATCGAAGTCCTCATCTCTCAAAGTGCTAGGAG--AGTGAGCTCAATGATTGCAA--TC---A------AAAACTATTTCAAATT---AAA-CGATTTATAATGTTGGGGGAAATTTTTGTTTT---AGAACA-AGGT-ACGTTATCCAGGGAACAAGTTGTAA--TCATTT-GATTTATGCTAGCTCATC-----TGTAAA---TCTTCAACTTTGTCATCGACAA--TACATATATACA-GCTAAATTG-ACAAAAAAAATTT---CAA--CTGATCTGTAGCAGACGGTCAT---TTTTAAAAAAAAAAAA----------AAATTAGAATTCGTTCGCGTG--CA-----CTTGTTGACTAGACATACGGAAATTAAACTCCCGCGCTAgc
gi|7 : tgttaactatatacactatagtcacaaaagtaaaactatttatcactaaatcgagatctactcgaagattgcatcccccgggccaG-TTCATTGCACTTATTTACGC----CA-C--------TG--TTT--TA-----------C--C--------AA-TG------GTGTGGTAAAA-TGCA----------ACAATCGAGTTTTTCACTT------------GGATTTAGCTAGC---ATAATTGCAA--TATTTAAAA---AAA---ACTTGAATTT---GAA-TGATTCGTAAT-TTCGGGGAAATCTGCGGCCCCGGGGAACAC-GTTATCG------TGAG-ACAAATTTTAA--TTGTTC-AGTTT------------------
gi|5 : TCATTGCACTTATTT---A----CG-C--------CACGTTTA--------------C--C--------AA-TG------GTGTGGTAAAACTGCA----------ACAATCGAGTTTTTCACTT------------GATTT-AGCTAGC---ATAATTGCAA--TATTTAAAA---AAAACT-----GAATTTGAAAA-TGATTCGTAAT-TTCGGGGAAATCTGCAGCCCCGGGGAACACGatg
gi|10 : taagttcacacaaacgtgcttagtttgccggaagtgtcacggtttagtcgaaaaatactaactatccccaacgtactaggacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagTGTTT---T----C--C--------AA--TTCATTC-----------CTAC--------CTATG------GCGTGATAAAA-TGCA----------ACAATCGAGTTCTTCACTT------------GGGA--ATCAAGCTTGATAATTCCAA--TA---A------AAAATTACTCGAAAAT---AAA-TTATTCGTAA--TTCGGGGAAATTTGCGATCCCGGtttattcgtggacaaatatttaatgttcagtttatgca
gi|12 : acAATCGAGTTCTTTACCT------------GGAG--AGCAAGCTTGCCAATTGCAA--TA---AAAA---AAAGCTACGTAAAATT---AAAATGATTCATAAT-TTCGGGGAAAATTGCGATCTCGGAGAACACGGGT
gi|1 : CG------ACAG-ATCAATTGTAGAATTGT-C-AATTT------------------TACAACATATTTTCGATGGCAGCATTGAAGAATTACAT-----AT-G--TACTTGCAT------AAATTGAACAACTTCCATTTGT
gi|9 : cggagttcgggtgccaactatagtcactaaagtaaaactgtagttcacccgaacatgctttagctttccgaagtgaataagtctagttgaaaattttgatctattctcacatgtactagtggtcttgttcaagatggcagacagtatgtgaaatgtaggttctgcactacaagcatagattaattttgaagaatatatgacgaaaatttcaaagggatgcatgttttctataatcttagttcattacactcatttacgtccattgttttccaattaattcttatcaatggcatggtaaaatgcaacaatcaagttctttacttggagagcaagctaaataatggcaataaaaaagctagttgaaattaaatgattcgtaattttgggaaaatttgtgattctggaaaacacgattaacatgGAG-ACGAATCGTAG--TTGTTC-AATCT-------------------GTAAT---TCTTCAATGCCGCCATCGAAAA--TACGT-----TG-C--AAA---------------TTTGAC-------ATCTGTTGAATACGGCCATATTTTTT-----------ATTTCTGAACTAAACAAAAATTTCTTCACGTGCACTGTGCACTAGTTGATTAaagacggccatatttttatttctgaactaaactaaactttgttcatgtgcactagttaactagacatgcggacactaaacttctgcactagactatagttaacacgcgaactccaccca
gi|13 : CTAAACTAAACTTTATTCACGTG--CA-----CTAGTTGATTAGACATGCGTACACTAAACCTCCGCACTAGA
gi|15 : tgaaCTGAACTAAAATTTGTTCACGTG--CA-----CTAGTTGACTAAACATGCCTACACTAAAtataattaacactcgagctcctccaaata
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): ACTAGACTATAGTTCACACGCGAACTCCACC
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 111 333 1111 22222222 111 4444444444444444444444444444444444 2222222222 222222222222 11 111 333333333 1111 11 2222222222222222222222222222 2222222222 1 222222 111 11 1111111
lowQualScore : 1 0 1 0 4 0 1 0 8888 555 555 2 1 0 6 5 1 6 999 9 7777 4 8 8 6 6 2 1 5 00000000 111 9999999999999999999999999999999999 5 5555555555 555555555555 33 222 000000000 888 77 66 0 5 5 2222 00 66 88 5 5 5 8888888888888888888888888888 4 8888888888 6 8 8 333333 0 444 6 11 8 1 8888888
lowQualScore : . . . . . . . . .... ... ... . . . . . . . ... . .... . . . . . . . . ........ ... .................................. . .......... ............ .. ... ......... ... .. .. . . . .... .. .. .. . . . ............................ . .......... . . . ...... . ... . .. . . .......
lowQualScore : 9 8 1 7 1 1 9 1 9999 777 444 0 0 2 7 7 0 7 555 3 0000 6 0 0 7 0 1 0 7 77777777 999 1111111111111111111111111111111111 7 0000000000 666666666666 88 999 111111111 888 00 99 4 0 0 1111 77 22 00 7 7 7 5555555555555555555555555555 6 0000000000 0 0 0 000000 8 222 4 44 0 0 6666666
consensus : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA---ACAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACNTATTTACG-C--------CACT-N-TTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-NCGAGA-G-ACAAAT-TGTAGTTGTTC-AATTT----------------TA----------TGTAATTCTTCAATGCCGCCATCGAAAATACGT-----TG--CAAA-TT-G-AC------AATTTT-ACAATTGATCTGTNGAAGACGGTCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
Reference ( family-301 ) : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACNATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--TACAGAGCATAGATTGATTTTGAAGAATA----TATGACGAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACTTATTTNCG-C--------TATT-T-TTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-ACGAGA-G-ACAAAT-TGTAGTTGTTC-AATTT----------------CG----------TGTAACTCTTCAATGCCGCCATCGAAAATACGT-----CG--NAAA-TT-G-AC------AATTTT-ACAATTGATCTGTCGAAGACGGCCATATTTT-TATTTCTGAACTAAACTAAANTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
gi|1 : CGGGTGCCAACTATAGTCACTAAAGTAAAACTGTAGTTCACCCGAACATGCTTTAGCTTTCCG----AAGTG-A-ATAA-GTCTAGTTGAAAATTTTGATCTATTCTCACATGTACTAGTGGT-CTTGTTCAAGATGGCA-GACAGTATGTGAAATGTAGGTTCT-GCAC-TACA-AGCATAGATTAATTTTGAAGAATA----TATGACGAAAATTTCAAAGGGATGCATGTTTTCTA-TAATCT-TAG-TTCATTACACTCATTTACGTC--------CATT-G-TTT---------------TCCAATTAATTCTTATCAATGGCATGGTAAAA-TGCA----------ACAATCAAGTTCTTTA------------CTTGGAG--AGCAAGCTAAATAATGGCAAT-----A---AAAA---AG--CT--AGTTGAAATT-AAATGATTCGTAAT-TTTGGGAAAATTTGTGATTCTGGAAAACACG----ATTA-AC---ATG-ACAAAT-GGAAGTTGTTC-AATTTATGCAAGTACA-----TA----------TGTAATTCTTCAATGCTGCCATCGAAAATATGT-----TG--TAAAATT-G-AC------AATTCT-ACAATTGATCTGTCGAAGACGGCCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAT-------GTGCACTAGTTAACTAGACATGCGGACACTAAACTTCTGCACTAGAC
gi|10 : cggagttATT-C-CTA---------------CCTA---------------TGGCGTGATAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGGA--ATCAAGCTTGATAATTCCAAT-----------AA---AAAATT--ACTCGAAAAT-AAATTATTCGTAA--TTCGGGGAAATTTGCGATCCCGGtatagttaacacgcgaactccaccca
gi|11 : actgttttccaattcCGGGTGCCAACTA---------AAGTAAAACTATAGTTCACACGAACGTAATTTAGTTTGTCAG---AAGTG-A-ACGA-GTCTAGTCGACTATTATCAAATATTCTCAGATG---TAGTGG
gi|12 : gtggagttAATCGAGTTCTTTA------------CCTGGAG--AGCAAGCTTGCCAATTGCAAT-----A---AAAA---AAAGCT--ACGTAAAATTAAAATGATTCATAAT-TTCGGGGAAAATTGCGATCTCGGAGAACACG----G
gi|13 : TGAACTAAACTAAACTTTATTCAC-------GTGCACTAGTTGATTAGACATGCGTACACTAAACCTCCGCACTAGACgt
gi|14 : AGTTCACACAAACGTGCTTTAGTTTGCCGG---AAGTGTC-ACGA-GTTTAGTCGAAAATTACTAACTATTCCCCAACGTAATAGtataattaacactcgagctcctccaaata
gi|15 : ttaGAACTGAACTAAAATTTGTTCAC-------GTGCACTAGTTGACTAAACATGCCTACACTAAA
gi|16 : GGTGTCAACTATAGTCACTAAAGTAAAACTTTAGTTCACCa
gi|17 : GTGGT-CTAGTTCAAGATGGCG-GACAAAGTGT
gi|2 : CGGGTGCCAACTATATTCACTAAAGTA-------------CTCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GACTAATCGACTATTGTTAACTATTCTCCCTCGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAATACAGGTTCT-GCA---ACAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGTGTGTTTTCTA-TAATCA-TGG-TTCATTACACATATTTACA-CCGCTGTTTTATT-T-TTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTTAATAATTGCAACTTAAAA---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAGT-TTCGGGGAAATTTGCGATCCCTGAGAACACG----GTTA-ACGAGA-G-ACAAAT-TGTAGTTGTTCAAATTTTGCTCGTACATACGTACA----------TGTAACTATTCAATTCCGCTATCAAAAATACGT-----TG--CAAATTT-G-AC------AATTTT-ACAATTAATCCGTTAAAGACGGTCATA-TTG-TATTTCTGAACTAAACTAAACCTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAAGTTCTGCACTAGACgc
gi|2 : ggagttCGCGTGTTAACTATAGT--CTAGTGCAGAACTTTAGTGTAC----GCATG-TCTAGTCAACTAGTGCACGTG-A-ACAAGGTTTAGTtatagttaacacgcgaactccaccta
gi|3 : ggagttcgggtgccaactatattcactaaagtactcgaacgtgctttagtttgccggaagtgaacgagactaatcgactattgttaactattctccctcgtactagtggtctagttcaagatggcggacaaaatgtaaaatacaggttctgcaacagagcatagattgattttgaagaatatatgacaaaaattacaaaggggtgtgtgttttctataatcatggttcattacacatatttacaccgctgttttattttttcccatggcgtggtaaaatgcaacaatcgagttcttcacttggagagcaagcttaataattgcaacttaaaaaaaaaaaactacttgaaattaaatgattcgtagtttcggggaaatttgcgatccctgagaacacggttaacgagagacaaattgtagttgttcaaattttgctcgtacatacgtacatgtaactattcaattccgctatcaaaaatacgttgcaaatttgacaattttacaattaatccgttaaagacggtcatattgtatttctgaactaaACTATAGTCACAAAAGTAAAACTATaactccaccta
gi|3 : tgttaactatatacAAGATGGCG-GACAAAGTGTGAAAATTAGTTTCT--CAATTACA-AGCAGAGATTAAATTTGAAGAAAACAATTATGACTCAAATTGCAGAGGTGTGCACGTCTTCAACTAATATACGGCTTCATT---CTT--TTCGG-C--------CACT-G-TTTGTCTAAAGTAAGTAACCCA-----------------GTGTGGTAAAG-TACAGTGTTAAATCAAAATCGAAGTCCTCATCTCTCAAAGTGCTAGGAG--AGTGAGCTCAATGATTGCAAT-----C---AAAA---A---CT--ATTTCAAATT-AAACGATTTATAATGTTGGGGGAAATTTTTGTTTT---AGAACAAGGTACGTTA-TCCAGG-GAACAAGT-TGTAATCATTT-GATTTA---------------TGCTAGCTCATCTGTAAATCTTCAACTTTGTCATCGACAATACATATATACAGCTAAA-TT-G-ACAAAAAAAATTT---CAACTGATCTGTAGCAGACGGTCAT-TTTT-AAAAAAAAAAAAAAATTAGAATTCGTTCGC-------GTGCACTTGTTGACTAGACATACGGAAATTAAACTCCCGCGCTAttatcactaaatcgagatctactcgaagattgcatcccccgggccaaagatggcggacaaagtgtgaaaattagtttctcaattacaagcagagattaaatttgaagaaaacaattatgactcaaattgcagaggtgtgcacgtcttcaactaatatacggcttcattcttttcggccactgtttgtctaaagtaagtaacccagtgtggtaaagtacagtgttaaatcaaaatcgaagtcctcatctctcaaagtgctaggagagtgagctcaatgattgcaatcaaaaactatttcaaattaaacgatttataatgttgggggaaatttttgttttagaacaaggtacgttatccagggaacaagttgtaatcatttgatttatgctagctcatctgtaaatcttcaactttgtcatcgacaatacatatatacagctaaattgacaaaaaaaatttcaactgatctgtagcagacggtcatttttaaaaaaaaaaaaaaattagaattcgttcgcgtgcacttgttgactagacatacggaaattaaactcccgcgcta
gi|4 : tgttaactatatacactatagtcacaaaagtaaaactatttatcactaaatcgagatctactcgaagattgcatcccccgggccaCGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTCTAGTTTGCCAG---AAGTG-G-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCTCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA---ACAGAGCTTAGATTGATTTTGAAGAATA----TATGACAAAGATTACAAAGGGGTGCGTGTTTTCTG-TAATCT-TGG-TTCATTTCACATATTTTCA-C--------TATT-TATTT---------------CCCT---------------TAGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CCTGGGG--AGCAAGCTTGATAATTGCAAT-----A---AAAAGAGAAAGCT--ACTTAGAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCTCGGAGAACACG----GGTA-ACGAGG-G-ACCAGT-TGTAGTTGTTC-AATTT----------------------------TGTAATTTTTCAATGCCACCATCGAAAATACAT-----TG--GAAA-CT-GCAC------AATTTTCACAATCGATCTGTAGAAGACGGTCATA-TTT-TATTTCTGCCCTAAACTAAACGTTGTTCAC-------GTGCTCTAGTTGACTATACATGCGTACACTAAACCTCCGCACTAGGC
gi|5 : AGTTCACACAAACGTGCTT-AGTTTGCCGG---AAGTGTC-ACG--GTTTAGTCGAAAAATACTAACTA-TCCCCAACGTACTAG
gi|5 : taTCATTGCACTTATTTACG-C--------CACG-T-TTA---------------CCAA---------------TGGTGTGGTAAAACTGCA----------ACAATCGAGTTTTTCA------------CTTG-ATTTAGCTAGC---ATAATTGCAAT-----ATTTAAAA---AAAACTGAATTTGAAA-----ATGATTCGTAAT-TTCGGGGAAATCTGCAGCCCCGGGGAACACG----TTTATTCGTG--G-ACAAATATTTAA-TGTTC-AGTTT----------------gacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagtcattgcacttatttacgccacgtttaccaatggtgtggtaaaactgcaacaatcgagtttttcacttgatttagctagcataattgcaatatttaaaaaaaactgaatttgaaaatgattcgtaatttcggggaaatctgcagccccggggaacacgtttattcgtggacaaatatttaatgttcagtttatgca
gi|6 : taagttcacacaaacgtgcttagtttgccggaagtgtcacggtttagtcgaaaaatactaactatccccaacgtactaggacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagCGGGTGCCAACTATAGTCACTAAAGTAAAACTATAATTCACCCGAACGTGTTTTAGTTTGCCG--------------------------ACTATTGTTAAATATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAGATGTAAAACGCAGGTTCT-GCA---ACAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTG-TGATCT-TGG-TTCATTACACATATTTTTA-C--------TACT-G-TTT---------------atgca
gi|7 : tG-TTCATTGCACTTATTTACG-C--------CACTGT-TTT---------------ACCAA--------------TGGTGTGGTAAAA-TGCA----------ACAATCGAGTTTTTCA------------CTTGGATTTAGCTAGC---ATAATTGCAAT-----ATTTAAAA---AAA-----ACTTGAATTT-GAATGATTCGTAAT-TTCGGGGAAATCTGCGGCCCCGGGGAACAC-----GTTA-TCGTGA-G-ACAAAT-TTTAATTGTTC-AGTTT----------------
gi|8 : CAACTA--ATCACTAA-GTACAACTATAGT-CACCCTAAC-TGCTT-AGTTT-CCGG---AAGGG-GCAC-A-G-CTAGTTCACTAT-GTTAACT-TTCTCCCA--TACTCATAATGCTAGTTCAAGATCGTATGACAAAATGTAAAACCCAGTTTCTCGCA---ACAACGCATAGAatg
gi|9 : GA-G-ACGAAT-CGTAGTTGTTC-AATCT-----------------------------GTAATTCTTCAATGCCGCCATCGAAAATACGT-----TG--CAAA-TTTG-AC------A--------------TCTGTTGAATACGGCCATATTTTTTATTTCTGAACTAAACAAAAATTTCTTCACGTGCACTGTGCACTAGTTGATTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTAGACTATAGTTCACACGCGAACTCCACC
Alignments
lowQualScore : 111 111111 1111 1111111111 5555555555555555555555555555555555 2222222222 222222222222 11 111 333333333 1111 999999999999999999999999999999999999 111 1111 1 222222 111 11 1111111
lowQualScore : 1 0 1 0 4 0 1 0 8888 555 555 2 0 0 6 5 1 6 111111 9 7777 8 8 6 6 1 1 5 9999999999 1 0000000000000000000000000000000000 5 5555555555 555555555555 33 222 000000000 888 77 66 0 5 5 2222 77 66 88 5 5 5 5 888888888888888888888888888888888888 444 7777 6 8 8 333333 0 444 1 11 8 0 8888888
lowQualScore : . . . . . . . . .... ... ... . . . . . . . ...... . .... . . . . . . . .......... . .................................. . .......... ............ .. ... ......... ... .. .. . . . .... .. .. .. . . . . .................................... ... .... . . . ...... . ... . .. . . .......
lowQualScore : 9 8 1 7 1 1 9 1 9999 777 444 0 8 2 7 7 0 7 888888 3 0000 0 0 7 0 0 9 7 1111111111 0 3333333333333333333333333333333333 7 0000000000 666666666666 88 999 111111111 888 00 99 4 0 0 1111 77 22 00 7 7 7 0 666666666666666666666666666666666666 000 0000 0 0 0 000000 8 222 0 44 0 7 6666666
consensus : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACNTATTTACG-CCA-C--------TGTTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-NCGAGA-G-ACAAAT-TGTAGTTGTTC-AATTT-----------T----------------A-------TGTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TT-G-AC------AATTTT-ACAATTGATCTGTNGAAGACGGTCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
Reference ( family-301 ) : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACNTATTTACG-CCA-C--------TNTTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-NCGAGA-G-ACAAAT-TGTAGTTGTTC-AATTT-----------T----------------A-------TGTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TT-G-AC------AATTTT-ACAATTGATCTGTNGAAGACGGTCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
gi|1 : CGGGTGCCAACTATAGTCACTAAAGTAAAACTGTAGTTCACCCGAACATGCTTTAGCTTTCCG----AAGTG-A-ATAA-GTCTAGTTGAAAATTTTGATCTATTCTCACATGTACTAGTGGT-CTTGTTCAAGATGGCA-GACAGTATGTGAAATGTAGGTTCT-GCACTA---CA-AGCATAGATTAATTTTGAAGAATA----TATGACGAAAATTTCAAAGGGATGCATGTTTTCTA-TAATCT-TAG-TTCATTACACTCATTTACGTCCA-T--------TGTTT---------------TCCAATTAATTCTTATCAATGGCATGGTAAAA-TGCA----------ACAATCAAGTTCTTTA------------CTTGGAG--AGCAAGCTAAATAATGGCAAT-----A---AAAA---AG--CT--AGTTGAAATT-AAATGATTCGTAAT-TTTGGGAAAATTTGTGATTCTGGAAAACACG----ATTA-AC---ATG-ACAAAT-GGAAGTTGTTC-AATTTATGCAAGTACAT----------------A-------TGTAATTCTTCAATGCTGCCATCGAAAATATGT---TGT----AAAATT-G-AC------AATTCT-ACAATTGATCTGTCGAAGACGGCCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAT-------GTGCACTAGTTAACTAGACATGCGGACACTAAACTTCTGCACTAGAC
gi|10 : cggagttCA-T--------TCCTA---------------CCTA---------------TGGCGTGATAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGGA--ATCAAGCTTGATAATTCCAAT-----------AA---AAAATT--ACTCGAAAAT-AAATTATTCGTAA--TTCGGGGAAATTTGCGATCCCGGtatagttaacacgcgaactccaccca
gi|11 : actgttttccaattCGGGTGCCAACTA---------AAGTAAAACTATAGTTCACACGAACGTAATTTAGTTTGTCAG---AAGTG-A-ACGA-GTCTAGTCGACTATTATCAAATATTCTCAGATG---TAGTGG
gi|12 : gtggagttAATCGAGTTCTTTA------------CCTGGAG--AGCAAGCTTGCCAATTGCAAT-----A---AAAA---AAAGCT--ACGTAAAATTAAAATGATTCATAAT-TTCGGGGAAAATTGCGATCTCGGAGAACACG----G
gi|13 : TGAACTAAACTAAACTTTATTCAC-------GTGCACTAGTTGATTAGACATGCGTACACTAAACCTCCGCACTAGACgt
gi|14 : AGTTCACACAAACGTGCTTTAGTTTGCCGG---AAGTGTC-ACGA-GTTTAGTCGAAAATTACTAACTATTCCCCAACGTAATAGtataattaacactcgagctcctccaaata
gi|15 : ttaGAACTGAACTAAAATTTGTTCAC-------GTGCACTAGTTGACTAAACATGCCTACACTAAA
gi|16 : GGTGTCAACTATAGTCACTAAAGTAAAACTTTAGTTCACCa
gi|17 : GTGGT-CTAGTTCAAGATGGCG-GACAAAGTGT
gi|2 : CGGGTGCCAACTATATTCACTAAAGTA-------------CTCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GACTAATCGACTATTGTTAACTATTCTCCCTCGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAATACAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGTGTGTTTTCTA-TAATCA-TGG-TTCATTACACATATTTACA-CCG-CTGTTTTATTTTTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTTAATAATTGCAACTTAAAA---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAGT-TTCGGGGAAATTTGCGATCCCTGAGAACACG----GTTA-ACGAGA-G-ACAAAT-TGTAGTTGTTCAAATTT-----------TGCTCGTACATACGTACA-------TGTAACTATTCAATTCCGCTATCAAAAATACGT---TGC----AAATTT-G-AC------AATTTT-ACAATTAATCCGTTAAAGACGGTCATA-TTG-TATTTCTGAACTAAACTAAACCTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAAGTTCTGCACTAGACgc
gi|2 : ggagttCGCGTGTTAACTATAGT--CTAGTGCAGAACTTTAGTGTAC----GCATG-TCTAGTCAACTAGTGCACGTG-A-ACAAGGTTTAGTtatagttaacacgcgaactccaccta
gi|3 : ggagttcgggtgccaactatattcactaaagtactcgaacgtgctttagtttgccggaagtgaacgagactaatcgactattgttaactattctccctcgtactagtggtctagttcaagatggcggacaaaatgtaaaatacaggttctgcaacagagcatagattgattttgaagaatatatgacaaaaattacaaaggggtgtgtgttttctataatcatggttcattacacatatttacaccgctgttttattttttcccatggcgtggtaaaatgcaacaatcgagttcttcacttggagagcaagcttaataattgcaacttaaaaaaaaaaaactacttgaaattaaatgattcgtagtttcggggaaatttgcgatccctgagaacacggttaacgagagacaaattgtagttgttcaaattttgctcgtacatacgtacatgtaactattcaattccgctatcaaaaatacgttgcaaatttgacaattttacaattaatccgttaaagacggtcatattgtatttctgaactaaACTATAGTCACAAAAGTAAAACTATaactccaccta
gi|3 : tgttaactatatacAAGATGGCG-GACAAAGTGTGAAAATTAGTTTCT--CA--ATTACA-AGCAGAGATTAAATTTGAAGAAAACAATTATGACTCAAATTGCAGAGGTGTGCACGTCTTCAACTAATATACGGCTTCATT---CTT--TTCGG-CCA-C--------TGTTTGTCTAAAGTAAGTAACCCA-----------------GTGTGGTAAAG-TACAGTGTTAAATCAAAATCGAAGTCCTCATCTCTCAAAGTGCTAGGAG--AGTGAGCTCAATGATTGCAAT-----C---AAAA---A---CT--ATTTCAAATT-AAACGATTTATAATGTTGGGGGAAATTTTTGTTTT---AGAACAAGGTACGTTA-TCCAGG-GAACAAGT-TGTAATCATTT-GATTTATGC-------T----------------AGCTCATCTGTAAATCTTCAACTTTGTCATCGACAATACATATATACAGCTAAA-TT-G-ACAAAAAAAATTT---CAACTGATCTGTAGCAGACGGTCAT-TTTT-AAAAAAAAAAAAAAATTAGAATTCGTTCGC-------GTGCACTTGTTGACTAGACATACGGAAATTAAACTCCCGCGCTAttatcactaaatcgagatctactcgaagattgcatcccccgggccaaagatggcggacaaagtgtgaaaattagtttctcaattacaagcagagattaaatttgaagaaaacaattatgactcaaattgcagaggtgtgcacgtcttcaactaatatacggcttcattcttttcggccactgtttgtctaaagtaagtaacccagtgtggtaaagtacagtgttaaatcaaaatcgaagtcctcatctctcaaagtgctaggagagtgagctcaatgattgcaatcaaaaactatttcaaattaaacgatttataatgttgggggaaatttttgttttagaacaaggtacgttatccagggaacaagttgtaatcatttgatttatgctagctcatctgtaaatcttcaactttgtcatcgacaatacatatatacagctaaattgacaaaaaaaatttcaactgatctgtagcagacggtcatttttaaaaaaaaaaaaaaattagaattcgttcgcgtgcacttgttgactagacatacggaaattaaactcccgcgcta
gi|4 : tgttaactatatacactatagtcacaaaagtaaaactatttatcactaaatcgagatctactcgaagattgcatcccccgggccaCGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTCTAGTTTGCCAG---AAGTG-G-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCTCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCTTAGATTGATTTTGAAGAATA----TATGACAAAGATTACAAAGGGGTGCGTGTTTTCTG-TAATCT-TGG-TTCATTTCACATATTTTCA-CTATT--------TATTT---------------CCCT---------------TAGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CCTGGGG--AGCAAGCTTGATAATTGCAAT-----A---AAAAGAGAAAGCT--ACTTAGAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCTCGGAGAACACG----GGTA-ACGAGG-G-ACCAGT-TGTAGTTGTTC-AATTT------------------------------------TGTAATTTTTCAATGCCACCATCGAAAATACAT---TGG----AAA-CT-GCAC------AATTTTCACAATCGATCTGTAGAAGACGGTCATA-TTT-TATTTCTGCCCTAAACTAAACGTTGTTCAC-------GTGCTCTAGTTGACTATACATGCGTACACTAAACCTCCGCACTAGGC
gi|5 : AGTTCACACAAACGTGCTT-AGTTTGCCGG---AAGTGTC-ACG--GTTTAGTCGAAAAATACTAACTA-TCCCCAACGTACTAG
gi|5 : taTCATTGCACTTATTTACG-CCA-C--------GTTTA---------------CCAA---------------TGGTGTGGTAAAACTGCA----------ACAATCGAGTTTTTCA------------CTTG-ATTTAGCTAGC---ATAATTGCAAT-----ATTTAAAA---AAAACTGAATTTGAAA-----ATGATTCGTAAT-TTCGGGGAAATCTGCAGCCCCGGGGAACACG----TTTATTCGTG--G-ACAAATATTTAA-TGTTC-AG-TT-----------T----------------A-------TGCAgacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagtcattgcacttatttacgccacgtttaccaatggtgtggtaaaactgcaacaatcgagtttttcacttgatttagctagcataattgcaatatttaaaaaaaactgaatttgaaaatgattcgtaatttcggggaaatctgcagccccggggaacacgtttattcgtggacaaatatttaatgttcagtttatgca
gi|6 : taagttcacacaaacgtgcttagtttgccggaagtgtcacggtttagtcgaaaaatactaactatccccaacgtactaggacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagCGGGTGCCAACTATAGTCACTAAAGTAAAACTATAATTCACCCGAACGTGTTTTAGTTTGCCG--------------------------ACTATTGTTAAATATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAGATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTG-TGATCT-TGG-TTCATTACACATATTTTTA-CTA-C--------TGTTT---------------
gi|7 : tG-TTCATTGCACTTATTTACG-CCA-C--------TGTTTTA-------------CCAA---------------TGGTGTGGTAAAA-TGCA----------ACAATCGAGTTTTTCA------------CTTGGATTTAGCTAGC---ATAATTGCAAT-----ATTTAAAA---AAA-----ACTTGAATTT-GAATGATTCGTAAT-TTCGGGGAAATCTGCGGCCCCGGGGAACAC-----GTTA-TCGTGA-G-ACAAAT-TTTAATTGTTC-AG-TT-----------T----------------A-------TG
gi|8 : CAACTA--ATCACTAA-GTACAACTATAGT-CACCCTAAC-TGCTT-AGTTT-CCGG---AAGGG-GCAC-A-G-CTAGTTCACTAT-GTTAACT-TTCTCCCA--TACTCATAATGCTAGTTCAAGATCGTATGACAAAATGTAAAACCCAGTTTCTCGCA--A---CAACGCATAGA
gi|9 : GA-G-ACGAAT-CGTAGTTGTTC-AATCT-------------------------------------GTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TTTG-AC------A--------------TCTGTTGAATACGGCCATATTTTTTATTTCTGAACTAAACAAAAATTTCTTCACGTGCACTGTGCACTAGTTGATTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTAGACTATAGTTCACACGCGAACTCCACC
Alignments
lowQualScore : 111 111111 1111 22222222 5555555555555555555555555555555555 2222222222 222222222222 11 111 333333333 1111 999999999999999999999999999999999999 111 1111 1 222222 111 11 1111111
lowQualScore : 1 0 1 0 4 0 1 0 8888 555 555 2 0 0 6 5 1 6 111111 9 7777 8 8 6 6 1 1 5 5 00000000 6666666666666666666666666666666666 5 5555555555 555555555555 33 222 000000000 888 77 66 0 5 5 2222 77 66 88 5 5 5 5 888888888888888888888888888888888888 444 7777 6 8 8 333333 0 444 1 11 8 0 8888888
lowQualScore : . . . . . . . . .... ... ... . . . . . . . ...... . .... . . . . . . . . ........ .................................. . .......... ............ .. ... ......... ... .. .. . . . .... .. .. .. . . . . .................................... ... .... . . . ...... . ... . .. . . .......
lowQualScore : 9 8 1 7 1 1 9 1 9999 777 444 0 8 2 7 7 0 7 888888 3 0000 0 0 7 0 0 9 7 7 77777777 0000000000000000000000000000000000 7 0000000000 666666666666 88 999 111111111 888 00 99 4 0 0 1111 77 22 00 7 7 7 0 666666666666666666666666666666666666 000 0000 0 0 0 000000 8 222 0 44 0 7 6666666
consensus : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACNTATTTACG-CCA-CTG--------TTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-NCGAGA-G-ACAAAT-TGTAGTTGTTC-AATTT-----------T----------------A-------TGTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TT-G-AC------AATTTT-ACAATTGATCTGTNGAAGACGGTCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
Reference ( family-301 ) : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACNTATTTACG-CCA-CTG--------TTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-NCGAGA-G-ACAAAT-TGTAGTTGTTC-AATTT-----------T----------------A-------TGTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TT-G-AC------AATTTT-ACAATTGATCTGTNGAAGACGGTCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
gi|1 : CGGGTGCCAACTATAGTCACTAAAGTAAAACTGTAGTTCACCCGAACATGCTTTAGCTTTCCG----AAGTG-A-ATAA-GTCTAGTTGAAAATTTTGATCTATTCTCACATGTACTAGTGGT-CTTGTTCAAGATGGCA-GACAGTATGTGAAATGTAGGTTCT-GCACTA---CA-AGCATAGATTAATTTTGAAGAATA----TATGACGAAAATTTCAAAGGGATGCATGTTTTCTA-TAATCT-TAG-TTCATTACACTCATTTACGTCCA-TTG--------TTT---------------TCCAATTAATTCTTATCAATGGCATGGTAAAA-TGCA----------ACAATCAAGTTCTTTA------------CTTGGAG--AGCAAGCTAAATAATGGCAAT-----A---AAAA---AG--CT--AGTTGAAATT-AAATGATTCGTAAT-TTTGGGAAAATTTGTGATTCTGGAAAACACG----ATTA-AC---ATG-ACAAAT-GGAAGTTGTTC-AATTTATGCAAGTACAT----------------A-------TGTAATTCTTCAATGCTGCCATCGAAAATATGT---TGT----AAAATT-G-AC------AATTCT-ACAATTGATCTGTCGAAGACGGCCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAT-------GTGCACTAGTTAACTAGACATGCGGACACTAAACTTCTGCACTAGAC
gi|10 : cggagtt---------------CCTA---------------TGGCGTGATAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGGA--ATCAAGCTTGATAATTCCAAT-----------AA---AAAATT--ACTCGAAAAT-AAATTATTCGTAA--TTCGGGGAAATTTGCGATCCCGGtatagttaacacgcgaactccaccca
gi|11 : actgttttccaattcattcctaCGGGTGCCAACTA---------AAGTAAAACTATAGTTCACACGAACGTAATTTAGTTTGTCAG---AAGTG-A-ACGA-GTCTAGTCGACTATTATCAAATATTCTCAGATG---TAGTGG
gi|12 : gtggagttAATCGAGTTCTTTA------------CCTGGAG--AGCAAGCTTGCCAATTGCAAT-----A---AAAA---AAAGCT--ACGTAAAATTAAAATGATTCATAAT-TTCGGGGAAAATTGCGATCTCGGAGAACACG----G
gi|13 : TGAACTAAACTAAACTTTATTCAC-------GTGCACTAGTTGATTAGACATGCGTACACTAAACCTCCGCACTAGACgt
gi|14 : AGTTCACACAAACGTGCTTTAGTTTGCCGG---AAGTGTC-ACGA-GTTTAGTCGAAAATTACTAACTATTCCCCAACGTAATAGtataattaacactcgagctcctccaaata
gi|15 : ttaGAACTGAACTAAAATTTGTTCAC-------GTGCACTAGTTGACTAAACATGCCTACACTAAA
gi|16 : GGTGTCAACTATAGTCACTAAAGTAAAACTTTAGTTCACCa
gi|17 : GTGGT-CTAGTTCAAGATGGCG-GACAAAGTGT
gi|2 : CGGGTGCCAACTATATTCACTAAAGTA-------------CTCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GACTAATCGACTATTGTTAACTATTCTCCCTCGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAATACAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGTGTGTTTTCTA-TAATCA-TGG-TTCATTACACATATTTACA-CCG-CTGTTTTATTTTTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTTAATAATTGCAACTTAAAA---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAGT-TTCGGGGAAATTTGCGATCCCTGAGAACACG----GTTA-ACGAGA-G-ACAAAT-TGTAGTTGTTCAAATTT-----------TGCTCGTACATACGTACA-------TGTAACTATTCAATTCCGCTATCAAAAATACGT---TGC----AAATTT-G-AC------AATTTT-ACAATTAATCCGTTAAAGACGGTCATA-TTG-TATTTCTGAACTAAACTAAACCTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAAGTTCTGCACTAGACgc
gi|2 : ggagttCGCGTGTTAACTATAGT--CTAGTGCAGAACTTTAGTGTAC----GCATG-TCTAGTCAACTAGTGCACGTG-A-ACAAGGTTTAGTtatagttaacacgcgaactccaccta
gi|3 : ggagttcgggtgccaactatattcactaaagtactcgaacgtgctttagtttgccggaagtgaacgagactaatcgactattgttaactattctccctcgtactagtggtctagttcaagatggcggacaaaatgtaaaatacaggttctgcaacagagcatagattgattttgaagaatatatgacaaaaattacaaaggggtgtgtgttttctataatcatggttcattacacatatttacaccgctgttttattttttcccatggcgtggtaaaatgcaacaatcgagttcttcacttggagagcaagcttaataattgcaacttaaaaaaaaaaaactacttgaaattaaatgattcgtagtttcggggaaatttgcgatccctgagaacacggttaacgagagacaaattgtagttgttcaaattttgctcgtacatacgtacatgtaactattcaattccgctatcaaaaatacgttgcaaatttgacaattttacaattaatccgttaaagacggtcatattgtatttctgaactaaACTATAGTCACAAAAGTAAAACTATaactccaccta
gi|3 : tgttaactatatacAAGATGGCG-GACAAAGTGTGAAAATTAGTTTCT--CA--ATTACA-AGCAGAGATTAAATTTGAAGAAAACAATTATGACTCAAATTGCAGAGGTGTGCACGTCTTCAACTAATATACGGCTTCATT---CTT--TTCGG-CCA-CTG--------TTTGTCTAAAGTAAGTAACCCA-----------------GTGTGGTAAAG-TACAGTGTTAAATCAAAATCGAAGTCCTCATCTCTCAAAGTGCTAGGAG--AGTGAGCTCAATGATTGCAAT-----C---AAAA---A---CT--ATTTCAAATT-AAACGATTTATAATGTTGGGGGAAATTTTTGTTTT---AGAACAAGGTACGTTA-TCCAGG-GAACAAGT-TGTAATCATTT-GATTTATGC-------T----------------AGCTCATCTGTAAATCTTCAACTTTGTCATCGACAATACATATATACAGCTAAA-TT-G-ACAAAAAAAATTT---CAACTGATCTGTAGCAGACGGTCAT-TTTT-AAAAAAAAAAAAAAATTAGAATTCGTTCGC-------GTGCACTTGTTGACTAGACATACGGAAATTAAACTCCCGCGCTAttatcactaaatcgagatctactcgaagattgcatcccccgggccaaagatggcggacaaagtgtgaaaattagtttctcaattacaagcagagattaaatttgaagaaaacaattatgactcaaattgcagaggtgtgcacgtcttcaactaatatacggcttcattcttttcggccactgtttgtctaaagtaagtaacccagtgtggtaaagtacagtgttaaatcaaaatcgaagtcctcatctctcaaagtgctaggagagtgagctcaatgattgcaatcaaaaactatttcaaattaaacgatttataatgttgggggaaatttttgttttagaacaaggtacgttatccagggaacaagttgtaatcatttgatttatgctagctcatctgtaaatcttcaactttgtcatcgacaatacatatatacagctaaattgacaaaaaaaatttcaactgatctgtagcagacggtcatttttaaaaaaaaaaaaaaattagaattcgttcgcgtgcacttgttgactagacatacggaaattaaactcccgcgcta
gi|4 : tgttaactatatacactatagtcacaaaagtaaaactatttatcactaaatcgagatctactcgaagattgcatcccccgggccaCGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTCTAGTTTGCCAG---AAGTG-G-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCTCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCTTAGATTGATTTTGAAGAATA----TATGACAAAGATTACAAAGGGGTGCGTGTTTTCTG-TAATCT-TGG-TTCATTTCACATATTTTCA-CTATTTA--------TTT---------------CCCT---------------TAGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CCTGGGG--AGCAAGCTTGATAATTGCAAT-----A---AAAAGAGAAAGCT--ACTTAGAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCTCGGAGAACACG----GGTA-ACGAGG-G-ACCAGT-TGTAGTTGTTC-AATTT------------------------------------TGTAATTTTTCAATGCCACCATCGAAAATACAT---TGG----AAA-CT-GCAC------AATTTTCACAATCGATCTGTAGAAGACGGTCATA-TTT-TATTTCTGCCCTAAACTAAACGTTGTTCAC-------GTGCTCTAGTTGACTATACATGCGTACACTAAACCTCCGCACTAGGC
gi|5 : AGTTCACACAAACGTGCTT-AGTTTGCCGG---AAGTGTC-ACG--GTTTAGTCGAAAAATACTAACTA-TCCCCAACGTACTAG
gi|5 : taTCATTGCACTTATTTACG-CCA-C-G--------TTT---------------ACCAA--------------TGGTGTGGTAAAACTGCA----------ACAATCGAGTTTTTCA------------CTTG-ATTTAGCTAGC---ATAATTGCAAT-----ATTTAAAA---AAAACTGAATTTGAAA-----ATGATTCGTAAT-TTCGGGGAAATCTGCAGCCCCGGGGAACACG----TTTATTCGTG--G-ACAAATATTTAA-TGTTC-AG-TT-----------T----------------A-------TGCAgacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagtcattgcacttatttacgccacgtttaccaatggtgtggtaaaactgcaacaatcgagtttttcacttgatttagctagcataattgcaatatttaaaaaaaactgaatttgaaaatgattcgtaatttcggggaaatctgcagccccggggaacacgtttattcgtggacaaatatttaatgttcagtttatgca
gi|6 : taagttcacacaaacgtgcttagtttgccggaagtgtcacggtttagtcgaaaaatactaactatccccaacgtactaggacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagCGGGTGCCAACTATAGTCACTAAAGTAAAACTATAATTCACCCGAACGTGTTTTAGTTTGCCG--------------------------ACTATTGTTAAATATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAGATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTG-TGATCT-TGG-TTCATTACACATATTTTTA-CTA-CTG--------TTT---------------
gi|7 : tG-TTCATTGCACTTATTTACG-CCA-CTG--------TTTTA-------------CCAA---------------TGGTGTGGTAAAA-TGCA----------ACAATCGAGTTTTTCA------------CTTGGATTTAGCTAGC---ATAATTGCAAT-----ATTTAAAA---AAA-----ACTTGAATTT-GAATGATTCGTAAT-TTCGGGGAAATCTGCGGCCCCGGGGAACAC-----GTTA-TCGTGA-G-ACAAAT-TTTAATTGTTC-AG-TT-----------T----------------A-------TG
gi|8 : CAACTA--ATCACTAA-GTACAACTATAGT-CACCCTAAC-TGCTT-AGTTT-CCGG---AAGGG-GCAC-A-G-CTAGTTCACTAT-GTTAACT-TTCTCCCA--TACTCATAATGCTAGTTCAAGATCGTATGACAAAATGTAAAACCCAGTTTCTCGCA--A---CAACGCATAGA
gi|9 : GA-G-ACGAAT-CGTAGTTGTTC-AATCT-------------------------------------GTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TTTG-AC------A--------------TCTGTTGAATACGGCCATATTTTTTATTTCTGAACTAAACAAAAATTTCTTCACGTGCACTGTGCACTAGTTGATTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTAGACTATAGTTCACACGCGAACTCCACC
Alignments
lowQualScore : 111 111111 1111 22222222 5555555555555555555555555555555555 2222222222 222222222222 11 111 333333333 1111 999999999999999999999999999999999999 111 1111 1 222222 111 11 1111111
lowQualScore : 1 0 1 0 4 0 1 0 8888 555 555 2 0 0 6 5 1 6 111111 9 7777 8 8 6 6 1 1 5 5 00000000 6666666666666666666666666666666666 5 5555555555 555555555555 33 222 000000000 888 77 66 0 5 5 2222 77 66 88 5 5 5 5 888888888888888888888888888888888888 444 7777 6 8 8 333333 0 444 1 11 8 0 8888888
lowQualScore : . . . . . . . . .... ... ... . . . . . . . ...... . .... . . . . . . . . ........ .................................. . .......... ............ .. ... ......... ... .. .. . . . .... .. .. .. . . . . .................................... ... .... . . . ...... . ... . .. . . .......
lowQualScore : 9 8 1 7 1 1 9 1 9999 777 444 0 8 2 7 7 0 7 888888 3 0000 0 0 7 0 0 9 7 7 77777777 0000000000000000000000000000000000 7 0000000000 666666666666 88 999 111111111 888 00 99 4 0 0 1111 77 22 00 7 7 7 0 666666666666666666666666666666666666 000 0000 0 0 0 000000 8 222 0 44 0 7 6666666
consensus : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACNTATTTACG-CCA-CTG--------TTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-NCGAGA-G-ACAAAT-TGTAGTTGTTC-AATTT-----------T----------------A-------TGTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TT-G-AC------AATTTT-ACAATTGATCTGTNGAAGACGGTCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
Reference ( family-301 ) : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACNTATTTACG-CCA-CTG--------TTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-NCGAGA-G-ACAAAT-TGTAGTTGTTC-AATTT-----------T----------------A-------TGTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TT-G-AC------AATTTT-ACAATTGATCTGTNGAAGACGGTCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
gi|1 : CGGGTGCCAACTATAGTCACTAAAGTAAAACTGTAGTTCACCCGAACATGCTTTAGCTTTCCG----AAGTG-A-ATAA-GTCTAGTTGAAAATTTTGATCTATTCTCACATGTACTAGTGGT-CTTGTTCAAGATGGCA-GACAGTATGTGAAATGTAGGTTCT-GCACTA---CA-AGCATAGATTAATTTTGAAGAATA----TATGACGAAAATTTCAAAGGGATGCATGTTTTCTA-TAATCT-TAG-TTCATTACACTCATTTACGTCCA-TTG--------TTT---------------TCCAATTAATTCTTATCAATGGCATGGTAAAA-TGCA----------ACAATCAAGTTCTTTA------------CTTGGAG--AGCAAGCTAAATAATGGCAAT-----A---AAAA---AG--CT--AGTTGAAATT-AAATGATTCGTAAT-TTTGGGAAAATTTGTGATTCTGGAAAACACG----ATTA-AC---ATG-ACAAAT-GGAAGTTGTTC-AATTTATGCAAGTACAT----------------A-------TGTAATTCTTCAATGCTGCCATCGAAAATATGT---TGT----AAAATT-G-AC------AATTCT-ACAATTGATCTGTCGAAGACGGCCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAT-------GTGCACTAGTTAACTAGACATGCGGACACTAAACTTCTGCACTAGAC
gi|10 : cggagtt---------------CCTA---------------TGGCGTGATAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGGA--ATCAAGCTTGATAATTCCAAT-----------AA---AAAATT--ACTCGAAAAT-AAATTATTCGTAA--TTCGGGGAAATTTGCGATCCCGGtatagttaacacgcgaactccaccca
gi|11 : actgttttccaattcattcctaCGGGTGCCAACTA---------AAGTAAAACTATAGTTCACACGAACGTAATTTAGTTTGTCAG---AAGTG-A-ACGA-GTCTAGTCGACTATTATCAAATATTCTCAGATG---TAGTGG
gi|12 : gtggagttAATCGAGTTCTTTA------------CCTGGAG--AGCAAGCTTGCCAATTGCAAT-----A---AAAA---AAAGCT--ACGTAAAATTAAAATGATTCATAAT-TTCGGGGAAAATTGCGATCTCGGAGAACACG----G
gi|13 : TGAACTAAACTAAACTTTATTCAC-------GTGCACTAGTTGATTAGACATGCGTACACTAAACCTCCGCACTAGACgt
gi|14 : AGTTCACACAAACGTGCTTTAGTTTGCCGG---AAGTGTC-ACGA-GTTTAGTCGAAAATTACTAACTATTCCCCAACGTAATAGtataattaacactcgagctcctccaaata
gi|15 : ttaGAACTGAACTAAAATTTGTTCAC-------GTGCACTAGTTGACTAAACATGCCTACACTAAA
gi|16 : GGTGTCAACTATAGTCACTAAAGTAAAACTTTAGTTCACCa
gi|17 : GTGGT-CTAGTTCAAGATGGCG-GACAAAGTGT
gi|2 : CGGGTGCCAACTATATTCACTAAAGTA-------------CTCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GACTAATCGACTATTGTTAACTATTCTCCCTCGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAATACAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGTGTGTTTTCTA-TAATCA-TGG-TTCATTACACATATTTACA-CCG-CTGTTTTATTTTTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTTAATAATTGCAACTTAAAA---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAGT-TTCGGGGAAATTTGCGATCCCTGAGAACACG----GTTA-ACGAGA-G-ACAAAT-TGTAGTTGTTCAAATTT-----------TGCTCGTACATACGTACA-------TGTAACTATTCAATTCCGCTATCAAAAATACGT---TGC----AAATTT-G-AC------AATTTT-ACAATTAATCCGTTAAAGACGGTCATA-TTG-TATTTCTGAACTAAACTAAACCTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAAGTTCTGCACTAGACgc
gi|2 : ggagttCGCGTGTTAACTATAGT--CTAGTGCAGAACTTTAGTGTAC----GCATG-TCTAGTCAACTAGTGCACGTG-A-ACAAGGTTTAGTtatagttaacacgcgaactccaccta
gi|3 : ggagttcgggtgccaactatattcactaaagtactcgaacgtgctttagtttgccggaagtgaacgagactaatcgactattgttaactattctccctcgtactagtggtctagttcaagatggcggacaaaatgtaaaatacaggttctgcaacagagcatagattgattttgaagaatatatgacaaaaattacaaaggggtgtgtgttttctataatcatggttcattacacatatttacaccgctgttttattttttcccatggcgtggtaaaatgcaacaatcgagttcttcacttggagagcaagcttaataattgcaacttaaaaaaaaaaaactacttgaaattaaatgattcgtagtttcggggaaatttgcgatccctgagaacacggttaacgagagacaaattgtagttgttcaaattttgctcgtacatacgtacatgtaactattcaattccgctatcaaaaatacgttgcaaatttgacaattttacaattaatccgttaaagacggtcatattgtatttctgaactaaACTATAGTCACAAAAGTAAAACTATaactccaccta
gi|3 : tgttaactatatacAAGATGGCG-GACAAAGTGTGAAAATTAGTTTCT--CA--ATTACA-AGCAGAGATTAAATTTGAAGAAAACAATTATGACTCAAATTGCAGAGGTGTGCACGTCTTCAACTAATATACGGCTTCATT---CTT--TTCGG-CCA-CTG--------TTTGTCTAAAGTAAGTAACCCA-----------------GTGTGGTAAAG-TACAGTGTTAAATCAAAATCGAAGTCCTCATCTCTCAAAGTGCTAGGAG--AGTGAGCTCAATGATTGCAAT-----C---AAAA---A---CT--ATTTCAAATT-AAACGATTTATAATGTTGGGGGAAATTTTTGTTTT---AGAACAAGGTACGTTA-TCCAGG-GAACAAGT-TGTAATCATTT-GATTTATGC-------T----------------AGCTCATCTGTAAATCTTCAACTTTGTCATCGACAATACATATATACAGCTAAA-TT-G-ACAAAAAAAATTT---CAACTGATCTGTAGCAGACGGTCAT-TTTT-AAAAAAAAAAAAAAATTAGAATTCGTTCGC-------GTGCACTTGTTGACTAGACATACGGAAATTAAACTCCCGCGCTAttatcactaaatcgagatctactcgaagattgcatcccccgggccaaagatggcggacaaagtgtgaaaattagtttctcaattacaagcagagattaaatttgaagaaaacaattatgactcaaattgcagaggtgtgcacgtcttcaactaatatacggcttcattcttttcggccactgtttgtctaaagtaagtaacccagtgtggtaaagtacagtgttaaatcaaaatcgaagtcctcatctctcaaagtgctaggagagtgagctcaatgattgcaatcaaaaactatttcaaattaaacgatttataatgttgggggaaatttttgttttagaacaaggtacgttatccagggaacaagttgtaatcatttgatttatgctagctcatctgtaaatcttcaactttgtcatcgacaatacatatatacagctaaattgacaaaaaaaatttcaactgatctgtagcagacggtcatttttaaaaaaaaaaaaaaattagaattcgttcgcgtgcacttgttgactagacatacggaaattaaactcccgcgcta
gi|4 : tgttaactatatacactatagtcacaaaagtaaaactatttatcactaaatcgagatctactcgaagattgcatcccccgggccaCGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTCTAGTTTGCCAG---AAGTG-G-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCTCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCTTAGATTGATTTTGAAGAATA----TATGACAAAGATTACAAAGGGGTGCGTGTTTTCTG-TAATCT-TGG-TTCATTTCACATATTTTCA-CTATTTA--------TTT---------------CCCT---------------TAGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CCTGGGG--AGCAAGCTTGATAATTGCAAT-----A---AAAAGAGAAAGCT--ACTTAGAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCTCGGAGAACACG----GGTA-ACGAGG-G-ACCAGT-TGTAGTTGTTC-AATTT------------------------------------TGTAATTTTTCAATGCCACCATCGAAAATACAT---TGG----AAA-CT-GCAC------AATTTTCACAATCGATCTGTAGAAGACGGTCATA-TTT-TATTTCTGCCCTAAACTAAACGTTGTTCAC-------GTGCTCTAGTTGACTATACATGCGTACACTAAACCTCCGCACTAGGC
gi|5 : AGTTCACACAAACGTGCTT-AGTTTGCCGG---AAGTGTC-ACG--GTTTAGTCGAAAAATACTAACTA-TCCCCAACGTACTAG
gi|5 : taTCATTGCACTTATTTACG-CCA-C-G--------TTT---------------ACCAA--------------TGGTGTGGTAAAACTGCA----------ACAATCGAGTTTTTCA------------CTTG-ATTTAGCTAGC---ATAATTGCAAT-----ATTTAAAA---AAAACTGAATTTGAAA-----ATGATTCGTAAT-TTCGGGGAAATCTGCAGCCCCGGGGAACACG----TTTATTCGTG--G-ACAAATATTTAA-TGTTC-AG-TT-----------T----------------A-------TGCAgacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagtcattgcacttatttacgccacgtttaccaatggtgtggtaaaactgcaacaatcgagtttttcacttgatttagctagcataattgcaatatttaaaaaaaactgaatttgaaaatgattcgtaatttcggggaaatctgcagccccggggaacacgtttattcgtggacaaatatttaatgttcagtttatgca
gi|6 : taagttcacacaaacgtgcttagtttgccggaagtgtcacggtttagtcgaaaaatactaactatccccaacgtactaggacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagCGGGTGCCAACTATAGTCACTAAAGTAAAACTATAATTCACCCGAACGTGTTTTAGTTTGCCG--------------------------ACTATTGTTAAATATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAGATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTG-TGATCT-TGG-TTCATTACACATATTTTTA-CTA-CTG--------TTT---------------
gi|7 : tG-TTCATTGCACTTATTTACG-CCA-CTG--------TTTTA-------------CCAA---------------TGGTGTGGTAAAA-TGCA----------ACAATCGAGTTTTTCA------------CTTGGATTTAGCTAGC---ATAATTGCAAT-----ATTTAAAA---AAA-----ACTTGAATTT-GAATGATTCGTAAT-TTCGGGGAAATCTGCGGCCCCGGGGAACAC-----GTTA-TCGTGA-G-ACAAAT-TTTAATTGTTC-AG-TT-----------T----------------A-------TG
gi|8 : CAACTA--ATCACTAA-GTACAACTATAGT-CACCCTAAC-TGCTT-AGTTT-CCGG---AAGGG-GCAC-A-G-CTAGTTCACTAT-GTTAACT-TTCTCCCA--TACTCATAATGCTAGTTCAAGATCGTATGACAAAATGTAAAACCCAGTTTCTCGCA--A---CAACGCATAGA
gi|9 : GA-G-ACGAAT-CGTAGTTGTTC-AATCT-------------------------------------GTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TTTG-AC------A--------------TCTGTTGAATACGGCCATATTTTTTATTTCTGAACTAAACAAAAATTTCTTCACGTGCACTGTGCACTAGTTGATTA
blockSeqs : T A A T GTGC TC AAG T G T A C ATTA G CAAT C A C A A A . T TTTTATTT GTCTAAAGTAAGTAACCCA C GTGTTAAATC TCTCTCAAAGTG TT TTG TTAAAA GAG AA GA A G GTAC TT GA A A A A T TGCTCGTACATACGTACA ATA AGCT T T C AAAAAA TCA T AT T GTGCACT
blockSeqs : T T A T G TC GA T . . T . A G . . . . T T C . . . TACCAA . . . TT TTG ATTT . AG . . . . A CA G . . . T ATGCTAGCTCATC . . . . . . TA A A . .
blockSeqs : T T C T G GC GA A . . G . A G . . . . G A T . . . ACCAA . . . . TTA ATTT . AA . . . . T GA G . . . T TA . . . . . . . A T . .
blockSeqs : T A T T G A GA T . . G . A A . . . . A T A . . . CCTA . . . . TCA A . AG . . . . A GT A . . . T TA . . . . . . . T A . .
blockSeqs : T A C T G A GA T . . C . A . . G A T . . . CCCA . . . . TTG C . AA . . . . T GT A . . . . . .
blockSeqs : T A A T G A G T . . T A . . . CCCT . . . . . A . A . . . . . . . . . . .
blockSeqs : . A C . G G A . . . . . . . . . .
blockSeqs : . . C . . . . .
blockSeqs : .
blockSeqCons : G*** A***** CCCA****************************** AA GA A* TA********************************** T** A*
originalCons : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACNTATTTACG-CCA-CTG--------TTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-NCGAGA-G-ACAAAT-TGTAGTTGTTC-AATTT-----------T----------------A-------TGTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TT-G-AC------AATTTT-ACAATTGATCTGTNGAAGACGGTCATATTTT-TATTTCTGAACTAAACTAAACTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
finalCons : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCAA-----CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACNTATTTACG-CCA-CTG--------TTTCCCA------------------------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-NCGAGA-G-ACAAAT-TGTAGTTGTTC-AATTTTA----------------------------------TGTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TT-G-AC------AATTTT--CAATTGATCTGTNGAAGACGGTCATA-TTT-TATTTCTGAACTAAACTAAACTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTAGACTATAGTTCACACGCGAACTCCACC
Alignments
lowQualScore : 111 111111 1111 22222222 5555555555555555555555555555555555 2222222222 222222222222 11 111 333333333 1111 999999999999999999999999999999999999 111 1111 2 3333333333333 111 111111 1111111
lowQualScore : 1 0 1 0 4 0 1 0 8888 555 555 2 0 0 6 5 1 6 111111 9 7777 8 8 6 6 1 1 5 5 00000000 6666666666666666666666666666666666 5 5555555555 555555555555 33 222 000000000 888 77 66 0 5 5 2222 77 66 88 5 5 5 5 888888888888888888888888888888888888 444 7777 4 8 5555555555555 1 111 8 0 222222 0 8888888
lowQualScore : . . . . . . . . .... ... ... . . . . . . . ...... . .... . . . . . . . . ........ .................................. . .......... ............ .. ... ......... ... .. .. . . . .... .. .. .. . . . . .................................... ... .... . . ............. . ... . . ...... . .......
lowQualScore : 9 8 1 7 1 1 9 1 9999 777 444 0 8 2 7 7 0 7 888888 3 0000 0 0 7 0 0 9 7 7 77777777 0000000000000000000000000000000000 7 0000000000 666666666666 88 999 111111111 888 00 99 4 0 0 1111 77 22 00 7 7 7 0 666666666666666666666666666666666666 000 0000 0 0 0000000000000 0 888 0 8 999999 7 6666666
consensus : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACNTATTTACG-CCA-CTG--------TTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-NCGAGA-G-ACAAAT-TGTAGTTGTTC-AATTT-----------T----------------A-------TGTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAATTTG-AC-----AATTTTA-CAATTGATCTGTNGAAGACGGTCATA--TTTT-ATTTCT------GAACTAAACTAAACTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
Reference ( family-301 ) : CGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTA-TAATCT-TGG-TTCATTACACNTATTTACG-CCA-CTG--------TTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTCGATAATTGCAAT-----A---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCCCGGAGAACACG----GTTA-NCGAGA-G-ACAAAT-TGTAGTTGTTC-AATTT-----------T----------------A-------TGTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAA-TTG-AC-----AATTTT--CAATTGATCTGTNGAAGACGGTCATA--TTTT-ATTTCT------GAACTAAACTAAACTTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAACTTCCGCACTAGAC
gi|1 : CGGGTGCCAACTATAGTCACTAAAGTAAAACTGTAGTTCACCCGAACATGCTTTAGCTTTCCG----AAGTG-A-ATAA-GTCTAGTTGAAAATTTTGATCTATTCTCACATGTACTAGTGGT-CTTGTTCAAGATGGCA-GACAGTATGTGAAATGTAGGTTCT-GCACTA---CA-AGCATAGATTAATTTTGAAGAATA----TATGACGAAAATTTCAAAGGGATGCATGTTTTCTA-TAATCT-TAG-TTCATTACACTCATTTACGTCCA-TTG--------TTT---------------TCCAATTAATTCTTATCAATGGCATGGTAAAA-TGCA----------ACAATCAAGTTCTTTA------------CTTGGAG--AGCAAGCTAAATAATGGCAAT-----A---AAAA---AG--CT--AGTTGAAATT-AAATGATTCGTAAT-TTTGGGAAAATTTGTGATTCTGGAAAACACG----ATTA-AC---ATG-ACAAAT-GGAAGTTGTTC-AATTTATGCAAGTACAT----------------A-------TGTAATTCTTCAATGCTGCCATCGAAAATATGT---TGT----AAAATTG-AC-----AATTCTA-CAATTGATCTGTCGAAGACGGCCATA--TTTTTATTTCT------GAACTAAACTAAACTTTGTTCAT-------GTGCACTAGTTAACTAGACATGCGGACACTAAACTTCTGCACTAGAC
gi|10 : cggagtt---------------CCTA---------------TGGCGTGATAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGGA--ATCAAGCTTGATAATTCCAAT-----------AA---AAAATT--ACTCGAAAAT-AAATTATTCGTAA--TTCGGGGAAATTTGCGATCCCGGtatagttaacacgcgaactccaccca
gi|11 : actgttttccaattcattcctaCGGGTGCCAACTA---------AAGTAAAACTATAGTTCACACGAACGTAATTTAGTTTGTCAG---AAGTG-A-ACGA-GTCTAGTCGACTATTATCAAATATTCTCAGATG---TAGTGG
gi|12 : gtggagttAATCGAGTTCTTTA------------CCTGGAG--AGCAAGCTTGCCAATTGCAAT-----A---AAAA---AAAGCT--ACGTAAAATTAAAATGATTCATAAT-TTCGGGGAAAATTGCGATCTCGGAGAACACG----G
gi|13 : T------GAACTAAACTAAACTTTATTCAC-------GTGCACTAGTTGATTAGACATGCGTACACTAAACCTCCGCACTAGACgt
gi|14 : AGTTCACACAAACGTGCTTTAGTTTGCCGG---AAGTGTC-ACGA-GTTTAGTCGAAAATTACTAACTATTCCCCAACGTAATAGtataattaacactcgagctcctccaaata
gi|15 : tta------GAACTGAACTAAAATTTGTTCAC-------GTGCACTAGTTGACTAAACATGCCTACACTAAA
gi|16 : GGTGTCAACTATAGTCACTAAAGTAAAACTTTAGTTCACCa
gi|17 : GTGGT-CTAGTTCAAGATGGCG-GACAAAGTGT
gi|2 : CGGGTGCCAACTATATTCACTAAAGTA-------------CTCGAACGTGCTTTAGTTTGCCGG---AAGTG-A-ACGA-GACTAATCGACTATTGTTAACTATTCTCCCTCGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAATACAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGTGTGTTTTCTA-TAATCA-TGG-TTCATTACACATATTTACA-CCG-CTGTTTTATTTTTT---------------CCCA---------------TGGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CTTGGAG--AGCAAGCTTAATAATTGCAACTTAAAA---AAAA---AAAACT--ACTTGAAATT-AAATGATTCGTAGT-TTCGGGGAAATTTGCGATCCCTGAGAACACG----GTTA-ACGAGA-G-ACAAAT-TGTAGTTGTTCAAATTT-----------TGCTCGTACATACGTACA-------TGTAACTATTCAATTCCGCTATCAAAAATACGT---TGC----AAATTTG-AC-----AATTTTA-CAATTAATCCGTTAAAGACGGTCATA--TTGT-ATTTCT------GAACTAAACTAAACCTTGTTCAC-------GTGCACTAGTTGACTAGACATGCGTACACTAAAGTTCTGCACTAGACgc
gi|2 : ggagttCGCGTGTTAACTATAGT--CTAGTGCAGAACTTTAGTGTAC----GCATG-TCTAGTCAACTAGTGCACGTG-A-ACAAGGTTTAGTtatagttaacacgcgaactccaccta
gi|3 : ggagttcgggtgccaactatattcactaaagtactcgaacgtgctttagtttgccggaagtgaacgagactaatcgactattgttaactattctccctcgtactagtggtctagttcaagatggcggacaaaatgtaaaatacaggttctgcaacagagcatagattgattttgaagaatatatgacaaaaattacaaaggggtgtgtgttttctataatcatggttcattacacatatttacaccgctgttttattttttcccatggcgtggtaaaatgcaacaatcgagttcttcacttggagagcaagcttaataattgcaacttaaaaaaaaaaaactacttgaaattaaatgattcgtagtttcggggaaatttgcgatccctgagaacacggttaacgagagacaaattgtagttgttcaaattttgctcgtacatacgtacatgtaactattcaattccgctatcaaaaatacgttgcaaatttgacaattttacaattaatccgttaaagacggtcatattgtatttctgaactaaACTATAGTCACAAAAGTAAAACTATaactccaccta
gi|3 : tgttaactatatacAAGATGGCG-GACAAAGTGTGAAAATTAGTTTCT--CA--ATTACA-AGCAGAGATTAAATTTGAAGAAAACAATTATGACTCAAATTGCAGAGGTGTGCACGTCTTCAACTAATATACGGCTTCATT---CTT--TTCGG-CCA-CTG--------TTTGTCTAAAGTAAGTAACCCA-----------------GTGTGGTAAAG-TACAGTGTTAAATCAAAATCGAAGTCCTCATCTCTCAAAGTGCTAGGAG--AGTGAGCTCAATGATTGCAAT-----C---AAAA---A---CT--ATTTCAAATT-AAACGATTTATAATGTTGGGGGAAATTTTTGTTTT---AGAACAAGGTACGTTA-TCCAGG-GAACAAGT-TGTAATCATTT-GATTTATGC-------T----------------AGCTCATCTGTAAATCTTCAACTTTGTCATCGACAATACATATATACAGCTAAA-TTG-ACAAAAAAAATTT--CAACTGATCTGTAGCAGACGGTCAT---TTTT-A-----AAAAAAAAAAAAAATTAGAATTCGTTCGC-------GTGCACTTGTTGACTAGACATACGGAAATTAAACTCCCGCGCTAttatcactaaatcgagatctactcgaagattgcatcccccgggccaaagatggcggacaaagtgtgaaaattagtttctcaattacaagcagagattaaatttgaagaaaacaattatgactcaaattgcagaggtgtgcacgtcttcaactaatatacggcttcattcttttcggccactgtttgtctaaagtaagtaacccagtgtggtaaagtacagtgttaaatcaaaatcgaagtcctcatctctcaaagtgctaggagagtgagctcaatgattgcaatcaaaaactatttcaaattaaacgatttataatgttgggggaaatttttgttttagaacaaggtacgttatccagggaacaagttgtaatcatttgatttatgctagctcatctgtaaatcttcaactttgtcatcgacaatacatatatacagctaaattgacaaaaaaaatttcaactgatctgtagcagacggtcatttttaaaaaaaaaaaaaaattagaattcgttcgcgtgcacttgttgactagacatacggaaattaaactcccgcgcta
gi|4 : tgttaactatatacactatagtcacaaaagtaaaactatttatcactaaatcgagatctactcgaagattgcatcccccgggccaCGGGTGCCAACTATAGTCACTAAAGTAAAACTATAGTTCACCCGAACGTGCTCTAGTTTGCCAG---AAGTG-G-ACGA-GTCTAGTCGACTATTGTTAACTATTCTCTCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAAATGTAAAACGCAGGTTCT-GCA--A---CAGAGCTTAGATTGATTTTGAAGAATA----TATGACAAAGATTACAAAGGGGTGCGTGTTTTCTG-TAATCT-TGG-TTCATTTCACATATTTTCA-CTATTTA--------TTT---------------CCCT---------------TAGCGTGGTAAAA-TGCA----------ACAATCGAGTTCTTCA------------CCTGGGG--AGCAAGCTTGATAATTGCAAT-----A---AAAAGAGAAAGCT--ACTTAGAATT-AAATGATTCGTAAT-TTCGGGGAAATTTGCGATCTCGGAGAACACG----GGTA-ACGAGG-G-ACCAGT-TGTAGTTGTTC-AATTT------------------------------------TGTAATTTTTCAATGCCACCATCGAAAATACAT---TGG----AAA-CTGCAC-----AATTTTCACAATCGATCTGTAGAAGACGGTCATA--TTTT-ATTTCT------GCCCTAAACTAAACGTTGTTCAC-------GTGCTCTAGTTGACTATACATGCGTACACTAAACCTCCGCACTAGGC
gi|5 : AGTTCACACAAACGTGCTT-AGTTTGCCGG---AAGTGTC-ACG--GTTTAGTCGAAAAATACTAACTA-TCCCCAACGTACTAG
gi|5 : taTCATTGCACTTATTTACG-CCA-C-G--------TTT---------------ACCAA--------------TGGTGTGGTAAAACTGCA----------ACAATCGAGTTTTTCA------------CTTG-ATTTAGCTAGC---ATAATTGCAAT-----ATTTAAAA---AAAACTGAATTTGAAA-----ATGATTCGTAAT-TTCGGGGAAATCTGCAGCCCCGGGGAACACG----TTTATTCGTG--G-ACAAATATTTAA-TGTTC-AG-TT-----------T----------------A-------TGCAgacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagtcattgcacttatttacgccacgtttaccaatggtgtggtaaaactgcaacaatcgagtttttcacttgatttagctagcataattgcaatatttaaaaaaaactgaatttgaaaatgattcgtaatttcggggaaatctgcagccccggggaacacgtttattcgtggacaaatatttaatgttcagtttatgca
gi|6 : taagttcacacaaacgtgcttagtttgccggaagtgtcacggtttagtcgaaaaatactaactatccccaacgtactaggacgacttcggttctacccgttagtaggtaaaatttacgcccgccttgtaaatactcaaaccagcacatcttatgctttaaaaataacatgcgcagtagcttgacgaaacgacatgtgtctaagtcaagaggcgacaaacgttgcacatgattacaaaagCGGGTGCCAACTATAGTCACTAAAGTAAAACTATAATTCACCCGAACGTGTTTTAGTTTGCCG--------------------------ACTATTGTTAAATATTCTCCCACGTACTAGTGGT-CTAGTTCAAGATGGCG-GACAAGATGTAAAACGCAGGTTCT-GCA--A---CAGAGCATAGATTGATTTTGAAGAATA----TATGACAAAAATTACAAAGGGGTGCGTGTTTTCTG-TGATCT-TGG-TTCATTACACATATTTTTA-CTA-CTG--------TTT---------------
gi|7 : tG-TTCATTGCACTTATTTACG-CCA-CTG--------TTTTA-------------CCAA---------------TGGTGTGGTAAAA-TGCA----------ACAATCGAGTTTTTCA------------CTTGGATTTAGCTAGC---ATAATTGCAAT-----ATTTAAAA---AAA-----ACTTGAATTT-GAATGATTCGTAAT-TTCGGGGAAATCTGCGGCCCCGGGGAACAC-----GTTA-TCGTGA-G-ACAAAT-TTTAATTGTTC-AG-TT-----------T----------------A-------TG
gi|8 : CAACTA--ATCACTAA-GTACAACTATAGT-CACCCTAAC-TGCTT-AGTTT-CCGG---AAGGG-GCAC-A-G-CTAGTTCACTAT-GTTAACT-TTCTCCCA--TACTCATAATGCTAGTTCAAGATCGTATGACAAAATGTAAAACCCAGTTTCTCGCA--A---CAACGCATAGA
gi|9 : GA-G-ACGAAT-CGTAGTTGTTC-AATCT-------------------------------------GTAATTCTTCAATGCCGCCATCGAAAATACGT---TGC----AAATTTG-AC-------------------ATCTGTTGAATACGGCCATATTTTTT-ATTTCT------GAACTAAACAAAAATTTCTTCACGTGCACTGTGCACTAGTTGATTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTAGACTATAGTTCACACGCGAACTCCACC