lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111 11111 1111111 11111111111111111111111111 111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 66666666 555555555 11 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 555555 2 44444444 1 33 111 222 22 2 9999999999999999999999999999999999999999999999999999999999999999999999999 1 3333333 77777777 1 11 2222 4444 2 00000 4 1 11 333 1 4 22 2 2 33333333 9999999999999999999999 33 22 1 333 2 22222222 7777777777777777777777777 333333333 33333 333 22 55 4 444 444444 33 555555 0000000 444 1 22222222222222 1 1 1 1 444444 7777777777777777777777777 3333 99999999999999999999999999 2222 11 11 1 2 11 33 2222 1 333333333333 1 111111111111111111111111111111111111111111 1 222 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222 1 111 1 2222222 1 222222 1 1 3333 1 1 1 333333333333 22222 33333333333333 6666666 1 11 11111 0000000000000000000000000000000000000000000000000000000000000000000 22222222222222222 11 1 111 1111 11 11111111
lowQualScore : 6 44444444 111111111 88 5 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 777777 6 0 3 88 66666666 7 11 888 111 11 0 3333333333333333333333333333333333333333333333333333333333333333333333333 5 4444444 00000000 1 6 88 2222 2 2222 0 00000 6 0 6 7 6 2 88 111 5 0 6 77 0 3 0 44444444 2 2222222222222222222222 55 77 5 444 3 0 33333333 1111111111111111111111111 222222222 6 44444 000 77 55 0 666 333333 00 999999 6 6666666 333 7 7 3 77777777777777 3 3 3 3 222222 7 7 9999999999999999999999999 7777 99999999999999999999999999 7 7777 88 88 6 3 6 6 88 00 8888 3 111111111111 3 444444444444444444444444444444444444444444 6 3 555 33 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111 0 8 111 66 7 0 3 6666666 0 8 3 888888 3 0 0 1111 0 0 0 888888888888 2 0 44444 00000000000000 7 2222222 6 2 0 33 88888 8888888888888888888888888888888888888888888888888888888888888888888 33333333333333333 66 11 66 5 66 5 0 1 444 5555 66 66 88 4 4 11 3 666 33333333 7
lowQualScore : . ........ ......... .. . ........................................................................................... . ...... . . . .. ........ . .. ... ... .. . ......................................................................... . ....... ........ . . .. .... . .... . ..... . . . . . . .. ... . . . .. . . . ........ . ...................... .. .. . ... . . ........ ......................... ......... . ..... ... .. .. . ... ...... .. ...... . ....... ... . . . .............. . . . . ...... . . ......................... .... .......................... . .... .. .. . . . . .. .. .... . ............ . .......................................... . . ... .. ......................................................................................................................................................... .... . . ... .. . . . ....... . . . ...... . . . .... . . . ............ . . ..... .............. . ....... . . . .. ..... ................................................................... ................. .. .. .. . .. . . . ... .... .. .. .. . . .. . ... ........ .
lowQualScore : 0 55555555 555555555 00 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 555555 0 0 0 55 00000000 0 55 000 555 00 0 0000000000000000000000000000000000000000000000000000000000000000000000000 0 0000000 55555555 5 0 00 5555 5 5555 0 00000 0 0 0 0 0 5 00 000 5 0 0 55 0 0 0 00000000 5 5555555555555555555555 00 55 5 000 0 0 00000000 5555555555555555555555555 000000000 0 00000 000 55 00 0 000 000000 00 000000 0 0000000 000 0 3 3 77777777777777 3 3 3 3 000000 3 3 0000000000000000000000000 5555 55555555555555555555555555 3 7777 33 33 7 3 7 7 33 33 3333 3 333333333333 3 333333333333333333333333333333333333333333 7 3 000 88 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222 0 8 666 88 0 0 2 0000000 0 8 2 888888 2 0 0 2222 0 0 0 222222222222 5 8 55555 00000000000000 0 5555555 5 5 0 88 55555 4444444444444444444444444444444444444444444444444444444444444444444 22222222222222222 99 99 99 0 99 0 0 4 111 3333 99 99 11 4 4 00 6 444 22222222 6
consensus : CAATGAGTACTNGATACTCGACTATCGCTNNGCTAAAGCGTANCGACCATCGACT--ACATTTTTTTTTGCAATCA-AGCACTCATTAAAAA-AGCTTTTTAAATAATGTTCA-TAGATTCTATAAAATGCTTCAGTAT--AG---TTTTGTGAGTAAAATCATGTTAGGGTAAATTCAAAACGAGTTNTAATTCGTTCATGCTCAAATCATTAAATCATTTGAGTTNTGGATGTTGGTCNGTAAACATGNNTCCGAAATCCACTGTNTGGGTCACACTCTAAAAGATCTCATGATGGNATANCCGATGACGGAAAAAATTAAATACATTATACATGNA-TGTGATACTG--TGAACTGTCATATCTCCGAAATCCACTGTNTNGGATCATACTCTAAAAGTCAGTATCCNATGACGGAGAAAACCGGTNAAATACATTTACATGTATGTGAATTTGAATTATCACTCTGCGAAG-GGACAACAAACACATATTTTAAAAGCCAATATTANTCAGAATCACCATTAAATTTTCTCTACGAAACGAACAGATT-TCGAAACAAAAAATTNCCTGGATAAGTTGACTGANAAA---ACCTCAGGAAGAGTGGGNTGTCAGCTAATTAGTTTATTTCGAATACATCGTAAATAATGAAANGATACATTGGAAAAGTCAATGAGTCCAGTTGGACCNTAGGCTAATTAGGGAGTNANTGNGTAGAGGCCATCCCTCGNGGTATAACGTACACCTTTGAAGCTGTTNNCTTTCAATTGAAGACAAAAGACTGCACGAGCGCACTA-ACGAATTTTCTCAGACAAAGAAAAAACGTGCCCGTG-TAA-TTTCACAGAAATAATG-----ATGAAATAA-G-ATGAAAATAAA-TAGAT--CG-AATGC-TTT-CT-GT-AC-TTCT--TAT-TTAGATATTGAGGTACTTTTCGTGCCAAGCGNGAAATACCCAGGCCTGTCTGTCGTCGTCATCAAGCTAAAACACCGTGTAATAACACGTGTAAATATTTCAACCAGNGG-CTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTGAACA--AATTT----CAAA-CG-GCCATCC----AGAT-TGTA---AT-------TGTA-AT-TG-TC--ATT------------GGTGTCAGCCTT-ACG--GCTCGT--CAGCAAAATAC----GTGCG--GAA----TTACAA-CT-ACGAACANA---AAAATT---ANCG-AACA-ATATGA-----GAAGTG-G-AATG-AATA--------ATAGAG-GATGGAC--GTATA----TNAAA-ATAGTTATACGTA---------AGG-AAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---T---AG-AAGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCA-G-TGAAC--TT--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CGTGTAATG------TNTGACT-GA--TGACT--T--TGAA-----ACA---CTTCG--TAC----CCTGT----AA----TCAG-CCCCCT----CTCT-C-GTTT-GTTT------TTTTA-C----CGAG--T--A--C-TC--GACTAT-CGCT-CGACTAA-AGCC--C-C--GAG--TA-CTC-G-AC--TAAGC-T---AT--------CCGAGTAAAATTGACATCCCTA
Reference ( gi|1 ) : CAACGAGTACTCGAT-CACAACTATCGCTCGGT-----CGTACCGATCATCGACTTAAAATTTTCAT----ACTCGTAGTACTCGTTAAAAATAGCCTTTT--------TTCAGTAGATTATA-AAGATGTTACAATATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAACTT-AAATTAGTTGCAATTCGTTCATGTTCAGATT----AATCATTAGAGTTA-GGATGTTGGTTAGTAAACATTCATCTGAAATTCACTGAATGGG-CACACT----AAG-T----------AA-AACCGATG-------AAAT---ATACATTATATATGAATTATGAAATTGCATGAACTCTCATATCTCTGAAATCCACTGTA-GGG--CATACTTTAA----C-G-ATCTTATGGTGGAGAAAACCGGTGAAATA----TACAT-TATATGAAT-----TTATCACTCTGCGGAGAGAACAACAAACACAAATTTTAAAAGCCAGTATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATTGTCAAAAC--AAA-TTACC-GGAT-ATTT-ACTGACAAATATACTTCAGAAA---TGAACTGTCAACTAATTAG-TTATTT--AATACATCGTAAATAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCTTAGGCTAATTATGGATCTATTGTGTAAAG--CGCCCCTCGT-GTATAACGCACACCTTCGAAGCTGTTAATTTTCA--TGAAAACAAA--ACTGCACG-GCGCACTACAAGAATTTTCTCAGA-AAAG-AAAAACGGCCCCGTATTAATTTTCACGGAAATAATGAATAGATAAAATAA-ATATTAAAATAAA-TAGAT--CGGAATGCATTT-CT-GT-AC-TTCTATTAT-TTAGATATTGAGGTACTTTTCATGCT-AGCAC--AATACC--AAC----CTGTCGT-G--ATCAAGCTA--------------A-------T---TATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTGAACAAGAATTT----CAAA-CG-GCCATCC----AGAT-TGTA---AT-------TGTA-AT-TG-TC--ATT------------GGTGTCAGCCTT-ACG--GCTCGT--CAGCAAAATAC----ATACG--GAA----TTACAA-CT-AC-AATAAA---AAAATT---ATTG-AA-A-ATATGA-----AAAGTG-G-AATG-AATA--------ATAGA--GATGGAC--CTATA----TCAAA-ATAGTTACACGT----------A---AAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---T---AG-AAGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCA-G-TGAAC--TT--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAAT-------TGTGACT-GA--TGACT--T--TGAA-----ACA---CTT----TAC----CCTGT----GA----TCAG-CCCCCT----CTCTTT-GTTT-GTTT------TTTTA-A----CGAG--T--A--C-TC--GACTAT-CGCT-CGACTAA-AGCC--T-C--GAG--TA-CTC-G-AC--TAAGC-T---AT--------CCGAGTGAAATTGACATCCCTAC
gi|5 : CAATGAGTACTC-------AACTATCGCTATGT-----CATAACGACCATCGACT--ACATTTTTTTTTGCAATCA-AGCACTCATTAAAAA-AGCTTTTTAAATAATGTTCA-TAGATTCTATAAAATGCTTCAGTAT--AG---TTTTGTAAGT-AAATCATGTTAGGGTAAATTCAAAACGAATTTTAATTTGTTCATGCTCA-ATC----AATCATTTGAGTTGTGGATGTTGGTCTGTAAACATGATTCCAAAATCCACTGTTTGGATCATACTCTAAAAG-T----------CATATCCAATGACGGAAAAAATTAAATACATT-TACATGTA-TGTGATACTG
gi|3 : tTACTGGATACTCGACTATCGCTCGACTAAAGCGT-CCGAT-ATCGACTaac
gi|2 : aaaaaccaatattattcagaatccattaaattttctctacaaaacgaacagtttcgaaacaaaattcctggatagttgactgacaaaactaggaagagtgagagtcagttaattattatttcgaatactcgtataatgaaaggatacattggaaaagtcaatgatccagtgcctaggctaattagggagtgagtgagagaggccatccctcgagtgtatacaagctgttaatttcaattgaagaagagaagaggagcgagagagtgtgagagagagtgtgagtgtgagagagagtgatggaaataagacaataaatcaatagatttcgtaatgcattttctcgtgacatgctatattagatattgaggtactttgtgagcgggaaatacagcctgtcgtcgtcatcaagctaaacacgtgtaaatatttcaccagactttcattaaacattactatgttctattttaactgaacaaatttcaaaacgagagattgtaattgtagattgttcgattggttcagccttacgtcgtcagcccaatacgtgattcaatacaaacagaagagagaattgaaacaataaaaagtggaatgaataaggaggaactatatcaaatttgtattagatgtaggaagtagagctcagataatccagccatttcaccagctgaacgttgtagctgatgcgcgagaactgtaatgtttgatgatgactggttgaacacttggtgcgtgagcgctccctttgttttttTTGTGAGTAAAATCA------GGTAAATTT-AAATTAGTTGTAATTCGTTCATGTTCAAATTATTAAATCATTTGAGTTT-GGATGTTGG-TAGTAAACATGCATCTGAAATTCACTGTATGGG-CACACTTTAAAAGATCTCATGATGGAA-AACCGATG-------AAAT---ATACATTATATATGAA--AT---------TGAACTGTCATATCTCTGAAATCCACTGTATGGG--CATACTTTAA----CAG-ATCTCATGATG--GAAAACCGGTGAAATA----TACAT-TATATGAATTTGAATTATCACTCTGCGAAG-GGACAACAAACACATATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACAAACAGATT-TCGAAACAAAAA-TTACCTGGATAAGTT-A-TGAAAAA-----CTCAGAAA---TAGACTGTCAACTAATTAGTTTATTT--AATACATCGT-AATAATGAAATGATACATTAGAAAAGTCAATGAGTCCAGTTGGACCATAGGCTAAT--------TATTGTGTAAAG--CA-CCCTCGTGGTATAACGTACACCTTTGAAGCTGTTCTCTTTCA--TGAAAACAAAAGACTGCACGAGCGCACTA-ACGAATTTTCTCAGACAAAGAAAAAACGTGCCCGTG-TAA-TTTCACAGAAATAATG-------AAAATAA-G-ATGAAAATAAATTAGAT--CGGAATGCTTTC-TT-GT-AC-TTCTTGTA--TTAGATATTGAGGTACTTTTCATGCCAAACAC--AATACCCAGACCTGTCTGTCGT-G--ATCAAGCTAAAACACCGTGTAATA-------T---TATTTCAACCATTGACTTT--TCAT--TACAAAACAATTA-TATGTCTCTGATTTAA--CTGAACA--AATTT----CAAA-CG-GCCATCC----AAATCTGTA---AT-------TGT--------TC--ATT------------GGTGTCAGCCTT-ACG--GCTCGT--CAGCAAAATAC----ATACG--GAA----TTACAA-CT-ACAAACAAA---TAATTT---AACG-AACATATATGA-----AAAGTG-GAAATG-AATA--------ATAGAAGGATGGAC--GTTTA----ATAAA-ATAGTT-TACGTA---------A---AAG----TATATAAAACATGATTAGA--CGATAATTGT-T-TAGATTG---T---AG-AA-TAGAG------CTCAGATAA-ACAGTGC----TTTCAACCA-G-TGAAC--TT--C-----GCTATTCG----TATGCGC-CGA--GGAAA---CATGTAATG------TGTGACTCGA--TGACT--T--TGAA-----ACA---CTTC---CACCCGGCCTGT----CA----TCAGACCCCCT----C-CTTT-GTTTGGTTT------TTTTA-C----CGAG--T--ACTC-TC--GACTAT-CGCTCCGACT-A-AGCC--T-CCGGAGTCTA-CTC-G-AC--TAAGC-T---AT--------CCGAGTAAAATTGACATCCCTAaagctctccgataaaaattgacatccctaa
gi|5 : TCCAAAATCCACTGTT-TGGATCATACTCTAAAAGTC-ATATCCAATGACGGAAAAAA----TTAAATACATTTACATGTATGTGAa
gi|3 : tcaatgagtactcaactatcgctatgtcataacgaccatcgactacatttttttttgcaatcaagcactcattaaaaaagctttttaaataatgttcatagattctataaaatgcttcagtatagttttgtaagtaaatcatgttagggtaaattcaaaacgaattttaatttgttcatgctcaatcaatcatttgagttgtggatgttggtctgtaaacatgatAAAAACCAATATTATTCAGAATC--CATTAAATTTTCTCTACAAAACGAACAG-TT-TCGAAAC--AAAATTCCT-GGAT-AGTTGACTGACAAA---ACT--AGGAAGAGTGAGA-GTCAGTTAATTA--TTATTTCGAATAC-TCGTA--TAATGAAAGGATACATTGGAAAAGTCAATGA-TCCAG-TG---CCTAGGCTAATTAGGGAGTGAGTGAG-AGAGGCCATCCCTCGA-GT-----GTATAC-----AAGCTGTTAA-TTTCAATTGAAGAtactgaac
gi|12 : ATGAAATAA-G-ATGAAAATAAA-TA--------------TTT-CT-GC-AC-GTCT--TATATTAGATATTGATGTACTTTTCATagagaagaggagcgagagagtgtgagagagagtgtgagtgtgagagagagtgatggaaataagacaataaatcaatagatttcgtaatgcattttctcgtgacatgctatattagatattgaggtactttgtgagcgggaaatacagcctgtcgtcgtcatcaagctaaacacgtgtaaatatttcaccagactttcattaaacattactatgttctattttaactgaacaaatttcaaaacgagagattgtaattgtagattgttcgattggttcagccttacgtcgtcagcccaatacgtgattcaatacaaacagaagagagaattgaaacaataaaaagtggaatgaataaggaggaactatatcaaatttgtattagatgtaggaagtagagctcagataatccagccatttcaccagctgaacgttgtagctgatgcgcgagaactgtaatgtttgatgatgactggttgaacacttggtgcgtgagcgctccctttgtttttttactggatactcgactatcgctcgactaaagcgtccgatatcgactaagctctccgataaaaattgacatccctaa
gi|3 : aAAATAAGACAATAAA-TCAA-TAGATTTCGTAATGCATTTTCTCGTGACATGCTAT-AT-T-AGATATTGAGGTACTTT--GTG---AGCGGGAAATAC---AGC----CTGTCGTCGTCATCAAGCTA--------------AACACGTGTAAATATTTCA-CCAGA---CTT--TCAT--TA---AAC-ATTACTATGT-TCTATTTTAA--CTGAACAA--ATTT----CAAAACGAG----------AGAT-TGTA---AT-------TGTAGAT-TG-TTCGATT------------GGT-TCAGCCTT-ACG----TCGT--CAGCCCAATAC----GTG------A----TT---------C-AATACA---AACA--------G-AA-G-A---GA-----GAATTG-A-AAC--AATA--------A-AAA--G-TGGA-------A----T--GA-ATAA------GG----------AGG-AAC----TATAT-CAA--------------AT--TTGTAT-TAGAT-G---T---AGGAAGTAGAG------CTCAGATAATCCAGC-CA---TTTC-ACCA-GCTGAAC--GT--T-----G-TAGCTG-----ATGCGC--GA--G--AA---C-TGTAATG------TTTGA-T-GA--TGACTGGT--TGAA------CA---CTTGG--TGC-------GT----GA----GC-G-CTCCCT-------------TT-GTTT------TTTTA-C----TGGA--T--A--C-TC--GACTAT-CGCT-CGACTAA-AGCG--T-C--CGA--TA--TC-G-AC--TAAGC-T---CT--------CCGATAAAAATTGACATCCCTA
gi|4 : aaaaaccaatattattcagaatccattaaattttctctacaaaacgaacagtttcgaaacaaaattcctggatagttgactgacaaaactaggaagagtgagagtcagttaattattatttcgaatactcgtataatgaaaggatacattggaaaagtcaatgatccagtgcctaggctaattagggagtgagtgagagaggccatccctcgagtgtatacaagctgttaatttcaattgaagaagagaagaggagcgagagagtgtgagagagagtgtgagtgtgagagagagtgatggTCAACAAGGAGACTTATTCAGAATACAAAAC-ATTAGTTTGTCTCTGATTTAAAGCTGGAAACGAAGTTGATAAAAA-CG-GCCATCCATGAAGAT-TGTACACATTACAGTGTGTA-ATGTGTTC--ACTCTCGGTACCCCCAGTGTTAGCGTTGACGGTGCTCGTACCAGCAAAATACTGGAGTGCAGCGAAACTGTTAC-C-CTGAC-AAACCA---AAAATTTAGACTGCAACA-GTATGATATCGGATGTGAG-AATGAAATATGTCGGGCGTAGT--GACACGCGGTTATAGTCTTCGAACATGTTTA-ACGT----------AGGGAAGAGTTTGGAT-AATAATGATTAGCTTCGATATGTGTGTATAGATTGAGATAGGAG-AAGT-GAGGTGTCCCGCAG-TGA-AGCGC-CCCCATTTC-ACCAGG-TGAACTGTC--C-----GCTCTGCGGTGATAGTCGCGCGAAGGG-AAGACCGTGTAGTCCATCCCTTTGGCT-GACTCGACT--TAGTGAATCAGGACAACCCTTCATCTAC----CCTGTCTCAAA----TCAG-GCCCCTCCTCCTCTGTAGTGT-GTTTGAGAACTTCTA-CTCTTCG-G--TG-A--CTTC--GACTA--CGCTACGACTAACAGCCCTC-C--GAG--TACCTCTGTACTTTAAGCGTTTGAT--------TCGAGTAAAATTGACATCCCTa
gi|8 : CTCAT--CAGCAAGATAC----ATAAT--AAA----TTACAATCT-ATGAACAATTTTAAAGTT---AT-G-AACA-ATATGA-----AAAGCG-G-AGTG-AATA--------TCAGAG-GATAGAC--ATACC----TGAAG-AAAGTTATATGTAAAAAAAAAAA---AAG----TATAT-AAACATGATTAGA--CCATta
gi|6 : ATGATTAGA--CGATAATTGTAT-TAAATTG---T---AG-AACTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCA-G-TGAAC--TTAGCTATAAGCTATTCT----TATGCGC-TAA--CG-TA---CATGTAATG------TATGACT-GA--TGACT--T--TGAA-----ACA---TTTG---TAC----CCTGT----AAGTTCTC-G-CCCCAT-----------------TTT------TCATA-C----CGAG--T--A--C-TC--GACTAT-CGC------------CC--C-C--GAG--TA-CTC-A-AC--TAAGC-T---AT--------CCGAGTAAAATTGACATCCCTAttt
gi|9 : TCTCC-ATTT-GTTT------GATCACA----GAAG--TTTA--C-TCCCGACTAT-CGCT-CGACTAA-AGCC--C-T--GAG--TA-CTC-G-AC---AAGC-T---AT--------CCGA-TGAAA-TGATATCCCTAg
gi|5 : TCA-A----TGAG--T--A--C-TC--AACTAT-CGCT-gtt
gi|11 : TA-A----CGAGGAT--A--C-TC--GACTATACTAT-CG-CTG---GCC--TGC--GAG--TA-TTC-G-ACATCAGGC-T---AT--------TAGAGTAAAATTGACATCCTTatgtcataacgaccatcgactacatttttttttgcaatcaagcactcattaaaaaagctttttaaataatgttcatagattctataaaatgcttcagtatagttttgtaagtaaatcatgttagggtaaattcaaaacgaattttaatttgttcatgctcaatcaatcatttgagttgtggatgttggtctgtaaacatgattccaaaatccactgtttggatcatactctaaaagtcatatccaatgacggaaaaaattaaatacatttacatgtatgtgatactgaac
gi|10 : ----CGAG--T--A--C-TA--GATTAT-CGCC-CGAATCA-AGCC--TTC--GAG--TA-TTC-G-GC--TAGAG-T---AC--------CCGAGT-AAATTGACATACCTAg
gi|13 : aac-C--GAG--TA-ATC-G-AC--TAGGC-T---ATAATAGTATCCGAGTAAAATTGAAATCCCTAgat
gi|14 : A-TTT-G-AC--TAAGC-T---AT--------CCGAGTAAAATTGACATTCC
gi|16 : C--TAAGC-T---CT--------CCGAGTAAAATTGACATCCCTAaagttac
gi|15 : AGGC-T---AT--------CCGAGTAAAACTGACATTCCTAta
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ATAGTTGTTTCTTGGCTGGCTCATCAGCAAAATACATAGTAATTTACTCACTATAACCAAATAAAGTCATGAACGAATACCGCAATAGATGACAAATGTGTAGCAGGAGAAATAGAACGACATAGGATGTCAAACTAAAATACTAACAGTAAAATATGGAACAGTGTTTACGGTAGTT
Alignments
lowQualScore : 111111 1111111111111111111111111111111111111 11111111 11111111111111111111111111
lowQualScore : 7777777 000000 22 2222 2 2 33333333 2 1 44444444 555555 333 4444 22 11 2 1 1111111111111111111111111111111111111 3333333333333 111 55 11111111 11 8888 4 22222 2 333 1 222 2 11 3333333 333 33 11 2 2 22222222 33 1 2 111 33 1 111 111 1 1 1111111 33333333 1 1 1 4444444444444 111 1 11 3 3333333333 22222 6666666666 88888888888888888888888888 3333 1 11 11 1 2 11 11 11 2222 1 1 2222 1 111 666666666666666666666666666666666666 1 111 11 222222222222222222 111 2222222222222222 22222 111111 1 333333333333333333333333333333333333333333333333 1111 111 222 222222 2222 1 22222222222 11111 11 1111111111 2222222 11 11111 222222 111 22222222222 2222222 44444444444 111111 1111 111 1 111 1111 11111111
lowQualScore : 5555555 6 22 666666 1 77 2 4 3333 3 0 0 66666666 0 2 5 4 22222222 7 888888 0 111 1 0 7 0 4444 11 33 22 0 0 1 3 2 0000000000000000000000000000000000000 7 0 1 9999999999999 2 6 777 55 6 66666666 77 6 88 1 5555 0 6 77777 0 4 1 7 888 7 3 7 999 1 7 3 11 1 7777777 0 777 9999 0 6 7 00 7 44 1 3 3 7 1 66666666 1 1 7 0 00 2 1 3 8888 444 00 0 3 222 6 7 6 666 7 5 2 6 9999999 4 88888888 0 0 0 0 2 3333333333333 111 0 3 33 0 3 2 4444444444 88888 0000000000 88888888888888888888888888 3 1111 0 33 33 2 0 0 2 33 33 33 1111 0 0 2 1111 0 777 000000000000000000000000000000000000 2 0 333 11 888888888888888888 0 88 8 9 11 444 9999999999999999 00000 999 0 3 888888 5 777777777777777777777777777777777777777777777777 7777 8 5 99 11 3 8 0 444 222 5 0 333333 0 8 8 5555 8 6 99999999999 77777 11 5555555555 9 8888888 1 8 11 33333 000000 444 22222222222 0000000 0 8 00000000000 3 6 999999 0000 555 5 66 5 66 5 0 0 000 5 3333 66 66 66 4 4 66666 555 3 22222222
lowQualScore : ....... . .. ...... . .. . . .... . . . ........ . . . . ........ . ...... . ... . . . . .... .. .. .. . . . . . ..................................... . . . ............. . . ... .. . ........ .. . .. . .... . . ..... . . . . ... . . . ... . . . .. . ....... . ... .... . . . .. . .. . . . . . ........ . . . . .. . . . .... ... .. . . ... . . . ... . . . . ....... . ........ . . . . . ............. ... . . .. . . . .......... ..... .......... .......................... . .... . .. .. . . . . .. .. .. .... . . . .... . ... .................................... . . ... .. .................. . .. . . .. ... ................ ..... ... . . ...... . ................................................ .... . . .. .. . . . ... ... . . ...... . . . .... . . ........... ..... .. .......... . ....... . . .. ..... ...... ... ........... ....... . . ........... . . ...... .... ... . .. . .. . . . ... . .... .. .. .. . . ..... ... . ........
lowQualScore : 0000000 0 00 000000 0 55 5 0 5555 0 0 0 00000000 0 5 5 0 00000000 3 000000 7 000 0 7 3 7 7777 33 00 00 7 7 0 7 0 7777777777777777777777777777777777777 3 7 0 0000000000000 5 0 555 00 0 00000000 00 0 00 0 0000 0 0 00000 0 0 0 3 000 3 3 3 777 0 3 7 00 0 0000000 7 000 7777 7 7 3 00 3 77 0 3 7 3 0 00000000 0 0 3 7 00 3 0 3 7777 000 77 7 3 333 7 3 7 000 3 0 3 7 0000000 0 55555555 0 2 0 0 5 5555555555555 000 0 5 88 0 2 0 0000000000 00000 3333333333 77777777777777777777777777 2 8888 0 88 88 5 0 0 5 88 88 88 2222 0 0 5 2222 0 555 888888888888888888888888888888888888 5 0 555 00 444444444444444444 8 88 0 6 88 000 0000000000000000 00000 222 8 8 222222 0 666666666666666666666666666666666666666666666666 0000 0 0 22 88 8 0 8 000 000 0 8 000000 8 0 0 0000 0 0 22222222222 88888 22 2222222222 6 0000000 0 0 00 00000 888888 000 44444444444 2222222 8 0 22222222222 2 7 222222 6666 666 0 99 0 99 0 0 1 111 0 6666 11 11 33 0 0 44444 888 3 11111111
consensus : CAACGAGTACTCGAT-CACAACTATCGCTNNGT-----CGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA------AACCGATGA-------AAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGG--CATACTTTAA----CGG-ATCTCATGGTGGAGAAAACCGGTGAAATA----TACAT-TATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAACAAAA--TTACCTGGATA-GTTNACTGACAAA---ACTTCAGAAA---TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAAATAATGAAATGATACATTGGAAAAGTCAATGA-TCCAGT-GGACCNTAGGCTAATTA-GGA-C-ATTGTGTAAAG--CGCCCCTCGTG-TATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAA-TAGAT--C-G-AATGCA-TTTC-T-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATACC-AGGCCTGTC----GT-GT-ATCAAGCTAAA----------AT------T-----TATTTCAACCAGAGAAC-TT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC----GTACGG---AA---TTACAA-CT-ACGAACAAA---AAAATT---ATCG-AACA-ATATGA-----AAAGTG-G-AATGAATAATA----G-AGGATGG----ACG----TATA----TNAAA-ATAGTTATACGT-------AAGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGG--AAGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTCC--C-TC----GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
Reference ( family-2807 ) : CAATGAGTACTNGATACTCGACTATCGCTNNGCTAAAGCGTANCGACCATCGACT--ACATTTTTTTTTGCAATCA-AGCACTCATTAAAAA-AGCTTTTTAAATAATGTTCA-TAGATTCTATAAAATGCTTCAGTAT--AGT---TTTGTGAGTAAAATCATGTTAGGGTAAATTCAAAACGAGTTNTAATTCGTTCATGCTCAAATCATTAAATCATTTGAGTTNTGGATGTTGGTCNGTAAACATGNNTCCGAAATCCACTGTNTGGGTCACACTCTAAAAGATCTCATGATGGNATANCCGATGACGGAAAAAATTAAATACATTATACATGNAT-GTGATACTG--TGAACTGTCATATCTCCGAAATCCACTGTNTNGGATCATACTCTAAAAGTCAGTATCCNATGACGGAGAAAACCGGTNAAATACATTTACATGTATGTGAATTTGAATTATCACTCTGCGAAGGGA-CAACAAACACATATTTTAAAAGCCAATATTANTCAGAATCACCATTAAATTTTCTCTACGAAACGAACAGATT-TCGAAACAAAAAATTNCCTGGATAAGTTGACTGANAAA---ACCTCAGGAAGAGTGGGNTGTCAGCTAATTAGTTTATTTCGAATACATCGTAAATAATGAAANGATACATTGGAAAAGTCAATGAGTCCAGTTGGACCNTAGGCTAATTAGGGAGTNANTGNGTAGAGGCCATCCCTCGNGGTATAACGTACACCTTTGAAGCTGTTNNCTTTCAATTGAAGACAA-AAGACTGCACGAGCGCACTA-ACGAATTTTCTCAGACAAAGAAAAAACGTGCCCGTGT-AATTT-CACAGAAATAATGA-----TG-AAATAAG-ATGA-AAATAAA-TAGAT--C-G-AATGC--TTTC-T-GT-ACTTCT--TAT-TTAGATATTGAGGTACTTTTCGTGCCAAGCGNGAAATACCCAGGCCTGTCTGTCGTCGTCATCAAGCTAAAACACCGTGTAATAACACGTGTAAATATTTCAACCAGNGG-C-TT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC----GTGCGG---AA---TTACAA-CT-ACGAACANA---AAAATT---ANCG-AACA-ATATGA-----GAAGTG-G-AATGAATAATA----G-AGGATGG----ACG----TATA----TNAAA-ATAGTTATACGT-------AAGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAG---AAGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CGTGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----AATCAG-CCCCCTCT--C-TC----GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
gi|1 : CAACGAGTACTCGAT-CACAACTATCGCTCGGT-----CGTACCGATCATCGACTTAAAATTTTCAT----ACTCGTAGTACTCGTTAAAAATAGCCTTTT--------TTCAGTAGATTATA-AAGATGTTACAATATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAACTTAAA-TTAGTTGCAATTCGTTCATGTTCAGATTA----ATCATTAGAGTTA-GGATGTTGGTTAGTAAACATTCATCTGAAATTCACTGAATGGG-CACACT----AAG------TAA------AACCGATGA-------AAT---ATACATTATATATGAATTATGAAATTGCATGAACTCTCATATCTCTGAAATCCACTGTA-GGG--CATACTTTAA----CG--ATCTTATGGTGGAGAAAACCGGTGAAATA----TACAT-TATATGAATTT-----ATCACTCTGCGGAGAGAACAACAAACACAAATTTTAAAAGCCAGTATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATTGTCAAAACAAA---TTACC-GGATA--TTTACTGACAAATATACTTCAGAAA---TGAACTGTCAACTAATTAGTT-ATTT--AATACATCGTAAATAATGAAATGATACATTGGAAAAGTCAATGA-TCCAGT-GGACCTTAGGCTAATTATGGATCTATTGTGTAAAG--CGCCCCTCGTG-TATAACGCACACCTTCGAAGCTGTTAATTTTCA--TGAAAACAA-AA--CTGCACG-GCGCACTACAAGAATTTTCTCAGA-AAAGAAAAA-CGGCCCCGTATTAATTTTCACGGAAATAATGAATAGATA-AAATAAATATTA-AAATAAA-TAGAT--C-GGAATGCA-TTTC-T-GT-ACTTCTATTAT-TTAGATATTGAGGTACTTTTCATGCTA-GCAC--AATACCAA--CCTGTC-------GTGATCAAGCTA------------AT------------TATTTCAACCAGAGAAC-TT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAAGAATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC----ATACGG---AA---TTACAA-CT-AC-AATAAA---AAAATT---ATTG-AA-A-ATATGA-----AAAGTG-G-AATGAATAATA----G-AG-ATGG----ACC----TATA----TCAAA-ATAGTTACACGT-------AA---AG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAG---AAGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAAT-------TGTGACT-GAT--GACT--T--TGAA-----ACA---CTT--T--AC----CCTGT----GATCAG-CCCCCTCT--CTTT----GTTT-GTTT------TTTTAA----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-T--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTGAAATTGACATCCCTA
gi|10 : AC----CGAG---T-A--CT-A--GATTAT-CGCC-CGAATCA-AGC-CTT--C--GAG--TAT-TC-G-GC--T--AGAG---T-AC--------CCGAGT-AAATTGACATACCTAc
gi|11 : aTAA----CGAGGA-T-A--CT-C--GACTATACTAT-CG-CTG---GC-C-TG-C--GAG--TAT-TC-G-ACATC--AGGC---T-AT--------TAGAGTAAAATTGACATCCTTgat
gi|12 : A-----TG-AAATAAG-ATGA-AAATAAA-TA----------------TTTC-T-GC-ACGTCT--TATATTAGATATTGATGTACTTTTCATg
gi|13 : a--C--GAG--TAA-TC-G-AC--T--AGGC---T-ATAATAGTATCCGAGTAAAATTGAAATCCCTA
gi|14 : AT-TT-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATTCC
gi|15 : --AGGC---T-AT--------CCGAGTAAAACTGACATTCCTAaagttac
gi|16 : C--T--AAGC---T-CT--------CCGAGTAAAATTGACATCCCTAtttaaaa
gi|2 : TTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTATTAAATCATTTGAGTT-TGGATGTTGGT-AGTAAACATGCATCTGAAATTCACTGTATGGG-CACACTTTAAAAGATCTCATGATGGAA-AACCGATGA-------AAT---ATACATTATATATGAA-----AT------TGAACTGTCATATCTCTGAAATCCACTGTATGGG--CATACTTTAA----CAG-ATCTCATGATGGA--AAACCGGTGAAATA----TACAT-TATATGAATTTGAATTATCACTCTGCGAAGGGA-CAACAAACACATATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACAAACAGATT-TCGAAAC-AAAAATTACCTGGATAAGTTA--TGAAAAA-----CTCAGAAA---TAGACTGTCAACTAATTAGTTTATTT--AATACATCGT-AATAATGAAATGATACATTAGAAAAGTCAATGAGTCCAGTTGGACCATAGGCTAATT--------ATTGTGTAAAG--CA-CCCTCGTGGTATAACGTACACCTTTGAAGCTGTTCTCTTTCA--TGAAAACAA-AAGACTGCACGAGCGCACTA-ACGAATTTTCTCAGACAAAGAAAAAACGTGCCCGTGT-AATTT-CACAGAAATAATGA--------AAATAAG-ATGA-AAATAAATTAGAT--CGG-AATGC--TTTCTT-GT-ACTTCT--TGTATTAGATATTGAGGTACTTTTCATGCCAAACAC--AATACCCAGACCTGTCTGTCGT-G--ATCAAGCTAAAACACCGTGTAATA-----T-----TATTTCAACCATTGA-CTTT--TCAT--TACAAAACAATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----AATCTGTA---ATT-------GT-------T-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC----ATACGG---AA---TTACAA-CT-ACAAACAAA---TAATTT---AACG-AACATATATGA-----AAAGTG-GAAATGAATAATA----GAAGGATGG----ACG----TTTA----ATAAA-ATAGTT-TACGT-------AA--AAG----TATATAAAACATGATTAGA--CGATAATTGT-T-TAGATTG---TAG---AA-TAGAG------CTCAGATAA-ACAGTGC----TTTCAACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GGAAA---CATGTAATG------TGTGACTCGAT--GACT--T--TGAA-----ACA---CTTC-C--ACCCGGCCTGT----CATCAGACCCCCTCC--T-TT----GTTTGGTTT------TTTTAC----CGAG---T-ACTCT-C--GACTAT-CGCTCCGACT-A-AGC-C-T--CCGGAGTCTAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAta
gi|3 : AAAAACCAATATTATTCAGAATC--CATTAAATTTTCTCTACAAAACGAACAG-TT-TCGAAACAAAA---TTCCTGGATA-GTTGACTGACAAA---ACT--AGGAAGAGTGAGA-GTCAGTTAATTA--TTATTTCGAATAC-TCGTA--TAATGAAAGGATACATTGGAAAAGTCAATGA-TCCAGT--G--CCTAGGCTAATTAGGGAGTGAGTGAG-AGAGGCCATCCCTCGAG------TGTATAC-----AAGCTGTTAA-TTTCAATTGAAGAAGAGAAGA--G---GAGCG----A-GAGAGTGT---------GAGAGAGAGTGTGA--GTGT-GA--------GAGAGAGTGA-----TGGAAATAAG-ACAATAAATCAA-TAGATTTC-GTAATGCATTTTC-TCGTGACATGC--TATATTAGATATTGAGGTACTTT--GTG---AGCGGGAAATAC---AGCCTGTC----GTCGTCATCAAGCTAAA--------------CACGTGTAAATATTTCA-CCAGA---C-TT--TCAT--TA---AAC-ATTACTATGT-TCTATTTTAA--CTG--AACAA--ATTTCA----AAACGAG------A----GAT-TGTA---ATT-------GTAGAT-TGT-TCGATT------------GGT-TCAGCCTT-ACG----TCGT--CAGCCCAATAC----GTG-------A---TT-CAA--T-ACAAACAGA---AGA--------------------GA-----GAATTG-A-AAC-AATAA-A----A-AG--TGG----A---------A----TGAA---------TAAG--------GAGGAAC----TATAT-CAA--------------AT--TTGTAT-TAGAT-G---TAGG--AAGTAGAG------CTCAGATAATCCAGC-CA---TTTC-ACCAGCTGAACG--T--T-----G-TAGCTG-----ATGCGC--GA--G--AA---C-TGTAATG------TTTGA-T-GAT--GACTGGT--TGAA------CA---CTTGGT--GC-------GT----GAGC-G-CTCCCT--------------TT-GTTT------TTTTAC----TGGA---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGCGT-C--C--GA---TA--TC-G-AC--T--AAGC---T-CT--------CCGATAAAAATTGACATCCCTAa
gi|4 : TCAACAAGGAGAC-TTATTCAGAATACAAAAC-ATTAGTTTGTCTCTGATTTAAAGCTGGAAACGA--AGTTGATAAAAA-CG-GCCATCCATGAAGAT-TGTACACATTACAGTGTGTA-ATGTGTTC--ACTCTCGGTACCCCCAGTGTTAGCGTTGACGGTGCTCGTACCAGCAAAATACTGGAGTGCAGCGAAACTGTTACC--CTGACAAAC-CA---AAAATTTAGACTGCAACA-GTATGATATCGGATGTGAG-AATGAA--ATATGTCG-GGCGTAGTGACACGCGGTTATAGTCTTCGAACATGTTTA-ACGT-------AGGGAAGAGTTTGGAT-AATAATGATTAGCTTCGATATGTGTGTATAGATTGAGATAGGAGAAGT-GAGGTGTCCCGCAG-TGA-AGCGC-CCCCATTTC-ACCAGGTGAACTGTC--C-----GCTCTGCGGTGATAGTCGCGCGAAGGG-AAGACCGTGTAGTCCATCCCTTTGGCT-GACTCGACT--TAGTGAATCAGGACAACCCTTCATCTAC----CCTGTCTCAAATCAG-GCCCCTCCTCC-TCTGTAGTGT-GTTTGAGAACTTCTACTCTTCG-G---TGA--CTTC--GACTA--CGCTACGACTAACAGC-C-CTCC--GAG--TACCTCTGTAC--TTTAAGCGTTTGAT--------TCGAGTAAAATTGACATCCCTa
gi|5 : CAATGAGTACT-------CAACTATCGCTATGT-----CATAACGACCATCGACT--ACATTTTTTTTTGCAATCA-AGCACTCATTAAAAA-AGCTTTTTAAATAATGTTCA-TAGATTCTATAAAATGCTTCAGTAT--AGT---TTTGTAAGTAAA-TCATGTTAGGGTAAATTCAAAACGAATTTTAATTTGTTCATGCTCAA-TCA----ATCATTTGAGTTGTGGATGTTGGTCTGTAAACATGATTCCAAAATCCACTGTTTGGATCATACTCTAAAAG---TCAT--------ATCCAATGACGGAAAAAATTAAATACATT-TACATGTAT-GTGATACTG--ta
gi|6 : tATGATTAGA--CGATAATTGTAT-TAAATTG---TAG---AACTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--TAGCTATAAGCTATTCT----TATGCGC-TAA--CG-TA---CATGTAATG------TATGACT-GAT--GACT--T--TGAA-----ACA----TTTGT--AC----CCTGT----A---AG-TTCTCGC---C-CC----AT----TTT------TCATAC----CGAG---T-A--CT-C--GACTAT-CGC------------C-C-C--C--GAG--TAC-TC-A-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAaac
gi|8 : --CTCAT--CAGCAAGATAC----ATAATA---AA---TTACAATCT-ATGAACAATTTTAAAGTT---AT-G-AACA-ATATGA-----AAAGCG-G-AGTGAATATCA----G-AGGATAG----ACA----TACC----TGAAG-AAAGTTATATGTAAAAAAAAAAAAAG----TATAT-AAACATGATTAGA--CCATg
gi|9 : TCT--C--C----ATTT-GTTT------GATCAC----AGAAGTTT-A--CT-CCCGACTAT-CGCT-CGACTAA-AGC-C-C--T--GAG--TAC-TC-G-AC-----AAGC---T-AT--------CCGA-TGAAA-TGATATCCCTAttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATAGTTGTTTCTTGGCTGGCTCATCAGCAAAATACATAGTAATTTACTCACTATAACCAAATAAAGTCATGAACGAATACCGCAATAGATGACAAATGTGTAGCAGGAGAAATAGAACGACATAGGATGTCAAACTAAAATACTAACAGTAAAATATGGAACAGTGTTTACGGTAGTT
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 222222 11 2222 1 1 33333333 1 1 11 222 333333 1 2222 11 1 1 1 66666666666666 4444444 222 3333333333333 1 1 11 22222 1 111 1 22 22 222 2 222 11 22 1 1 6666666 222 11 1 1 11 1 111 1 1 1 1111111 33333333 1 1 1 33333 1 1 1 11 1111111111 33333 4444444444 222222222222222222222 1111 11 11 1 2 11 11 11 2222 1 1 2222 1 111 666666666666666666666666666666666666 1 111 11 222222222222222222 111 333333333333333 22222 111111 444444444444444444444444444444444444444444444444 1111 111 1111 222222 2222 1 22222222222 11111 11 1111111111 2222222 11 11111 222222 111 22222222222 11111 33333333333 111111 1111 111 1 111 1111 11111111
lowQualScore : 999999 22 1 88 1 1 3333 1 5 5 66666666 5 1 5 1 88 000 7 888888 3 7 8888 99 2 0 3 2 33333333333333 3333333 333 7 9999999999999 1 5 5 88 77777 5 1 7 777 7 3 00 7 7 00 88 6 333 3 333 7 6 7 88 7 22 3 3 6 1 1111111 333 88 0 6 3 7 8888 2 88 0 3 222 6 7 6 3 7 3 2 6 9999999 3 88888888 0 22 0 0 2 66666 3 0 0 0 1 33 3 3 9999999999 11111 9999999999 555555555555555555555 3 1111 33 33 2 0 0 2 33 33 33 1111 0 0 2 1111 0 777 000000000000000000000000000000000000 2 0 333 11 555555555555555555 0 88 8 9 444 000000000000000 00000 999 0 3 888888 5 222222222222222222222222222222222222222222222222 7777 8 5 99 11 3 8 0 444 6666 0 333333 0 8 8 5555 8 6 99999999999 77777 11 5555555555 3 8888888 1 8 11 33333 000000 444 99999999999 88888 666 8 44444444444 6 999999 0000 555 5 66 5 66 5 0 0 000 5 3333 66 66 66 4 4 66666 555 3 22222222
lowQualScore : ...... .. . .. . . .... . . . ........ . . . . .. ... . ...... . . .... .. . . . . .............. ....... ... . ............. . . . .. ..... . . . ... . . .. . . .. .. . ... . ... . . . .. . .. . . . . ....... ... .. . . . . .... . .. . . ... . . . . . . . . ....... . ........ . .. . . . ..... . . . . . .. . . .......... ..... .......... ..................... . .... .. .. . . . . .. .. .. .... . . . .... . ... .................................... . . ... .. .................. . .. . . ... ............... ..... ... . . ...... . ................................................ .... . . .. .. . . . ... .... . ...... . . . .... . . ........... ..... .. .......... . ....... . . .. ..... ...... ... ........... ..... ... . ........... . ...... .... ... . .. . .. . . . ... . .... .. .. .. . . ..... ... . ........
lowQualScore : 000000 00 0 55 0 0 5555 0 5 5 00000000 0 0 5 0 00 555 3 333333 3 3 3333 33 0 7 3 0 33333333333333 3333333 333 3 0000000000000 0 5 0 00 00000 5 0 3 777 3 3 77 3 3 00 33 7 333 7 333 3 7 3 33 3 77 3 3 7 0 0000000 333 33 7 7 3 3 3333 0 33 7 3 333 7 3 7 3 3 3 0 7 0000000 7 55555555 0 22 0 0 5 22222 5 0 0 0 0 88 2 2 3333333333 77777 7777777777 777777777777777777777 2 5555 88 88 5 0 0 5 88 88 88 2222 0 0 5 2222 0 555 888888888888888888888888888888888888 5 0 555 00 888888888888888888 8 88 0 6 000 222222222222222 00000 222 8 8 222222 0 444444444444444444444444444444444444444444444444 0000 0 0 22 88 8 0 8 000 8888 8 000000 8 0 0 0000 0 0 22222222222 88888 22 2222222222 8 0000000 0 0 00 00000 888888 000 22222222222 44444 222 0 77777777777 7 222222 6666 666 0 99 0 99 0 0 1 111 0 6666 11 11 33 0 0 44444 888 3 11111111
consensus : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAACAAAA-TTACCTGGATA-GTTNACTGACAAA---ACT-CAGAAA---TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTGGAAAAGTCAATGA-TCCAGT-GGACCNTAGGCTAATTA-GGG---ATTGTGTAA---AG--CGCCCCTCGTG-TATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAAT-AGAT--CGGAATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATACC-AAGCCTGTC----GT-G--ATCAAGCTAAA-------A------------TTATTTCAACCAGAGAACTT--TCAT--TACAAAACA-TTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTACAA-CT-ACGAACAAA---AAANTTA---T-GAACA-ATATGA-----AAAGTG-G-AATGAATAATA----G-AGGATGG----ACG----TATA----TNAAA-ATAGTTATACGT-------AAGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTC-C--CTC----GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
Reference ( family-2807 ) : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAACAAAA-TTACCTGGATA-GTTNACTGACAAA---ACTTCAGAAA---TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAAATAATGAAATGATACATTGGAAAAGTCAATGA-TCCAGT-GGACCNTAGGCTAATTA-GGAC--ATTGTGTAA---AG--CGCCCCTCGTG-TATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAAT-AGAT--CG-AATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATACC-AGGCCTGTC----GT-GT-ATCAAGCTAAA-------AT-----------TTATTTCAACCAGAGAACTT--TCAT--TACAAAACA-TTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTACAA-CT-ACGAACAAA---AAAATTA---TCGAACA-ATATGA-----AAAGTG-G-AATGAATAATA----G-AGGATGG----ACG----TATA----TNAAA-ATAGTTATACGT-------AAGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTC-C--CTC----GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
gi|1 : CAACGAGTACTCGATCACAACTATCGCTCGGTCGTACCGATCATCGACTTAAAATTTTCAT----ACTCGTAGTACTCGTTAAAAATAGCCTTTT--------TTCAGTAGATTATA-AAGATGTTACAATATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAACTTAAA-TTAGTTGCAATTCGTTCATGTTCAGATTA----ATCATTAGAGTTA-GGATGTTGGTTAGTAAACATTCATCTGAAATTCACTGAATGGG-CACACT----AAG---T---AA-----AACCGATG-------AAAT---ATACATTATATATGAATTATGAAATTGCATGAACTCTCATATCTCTGAAATCCACTGTA-GGGCATACTTTAACG-ATCTTATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTT-----ATCACTCTGCGGAGAGAACAACAAACACAAATTTTAAAAGCCAGTATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATTGTCAAAACAAA--TTACC-GGATA--TTTACTGACAAATATACTTCAGAAA---TGAACTGTCAACTAATTAGTT-ATTT--AATACATCGTAAATAATGAAATGATACATTGGAAAAGTCAATGA-TCCAGT-GGACCTTAGGCTAATTATGGATCTATTGTGTAA---AG--CGCCCCTCGTG-TATAACGCACACCTTCGAAGCTGTTAATTTTCA--TGAAAACAA-AA--CTGCACG-GCGCACTACAAGAATTTTCTCAGA-AAAGAAAAA-CGGCCCCGTATTAATTTTCACGGAAATAATGAATAGATA-AAATAAATATTA-AAATAAAT-AGAT--CGGAATGCATTT-CT-GT-ACTTCTATTAT-TTAGATATTGAGGTACTTTTCATGCTA-GCAC--AATACC-AA-CCTGTC----GT-G--ATCAAGCTAA---------------------TTATTTCAACCAGAGAACTT--TCAT--TACAAAACA-TTA-TATGTCTCTGATTTAA--CTG--AACAAGAATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------ATA-CGGAA---TTACAA-CT-AC-AATAAA---AAAATTA---TTGAA-A-ATATGA-----AAAGTG-G-AATGAATAATA----G-A-GATGG----ACC----TATA----TCAAA-ATAGTTACACGT-------A---AAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TA-GA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAAT-------TGTGACT-GAT--GACT--T--TGAA-----ACA---CTT--T--AC----CCTGT----GATCAG-CCCCCTCTC--TTT----GTTT-GTTT------TTTTAA----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-T--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTGAAATTGACATCCCTA
gi|10 : AC----CGAG---T-A--CT-A--GATTAT-CGCC-CGAATCA-AGC-CTT--C--GAG--TAT-TC-G-GC--T--AGAG---T-AC--------CCGAGT-AAATTGACATACCTAc
gi|11 : aTAA----CGAGGA-T-A--CT-C--GACTATACTAT-CG-CTG---GC-C-TG-C--GAG--TAT-TC-G-ACATC--AGGC---T-AT--------TAGAGTAAAATTGACATCCTTgat
gi|12 : A-----TG-AAATAAG-ATGA-AAATAAAT-A--------------TTT-CT-GC-ACGTCT--TATATTAGATATTGATGTACTTTTCATg
gi|13 : a--C--GAG--TAA-TC-G-AC--T--AGGC---T-ATAATAGTATCCGAGTAAAATTGAAATCCCTA
gi|14 : AT-TT-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATTCC
gi|15 : --AGGC---T-AT--------CCGAGTAAAACTGACATTCCTAaagttac
gi|16 : C--T--AAGC---T-CT--------CCGAGTAAAATTGACATCCCTAtttaaaa
gi|2 : TTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTATTAAATCATTTGAGTT-TGGATGTTGGT-AGTAAACATGCATCTGAAATTCACTGTATGGG-CACACTTTAAAAGATCTCATGATGGAAAACCGATG-------AAAT---ATACATTATATATGAA-----AT------TGAACTGTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACAGATCTCATGATGGA--AAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGAAGGGA-CAACAAACACATATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACAAACAGATT-TCGAAACAAAAATTACCTGGATAAGTTA--TGA-AAA---ACT-CAGAAA---TAGACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTAGAAAAGTCAATGAGTCCAGTTGGACCATAGGCTAATTA--------TTGTGTAA---AG--CACCC-TCGTGGTATAACGTACACCTTTGAAGCTGTTCTCTTTCA--TGAAAACAA-AAGACTGCACGAGCGCACTA-ACGAATTTTCTCAGACAAAGAAAAAACGTGCCCGTGT-AATTT-CACAGAAATAATGA--------AAATAAG-ATGA-AAATAAATTAGAT--CGGAATGCTTTC-TT-GT-ACTTCT--TGTATTAGATATTGAGGTACTTTTCATGCCAAACAC--AATACCCAGACCTGTCTGTCGT-G--ATCAAGCTAAA-------ACACCGTGTAATATTATTTCAACCATTGACTTT--TCAT--TACAAAACAATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----AATCTGTA---ATT-------GT-------T-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------ATA-CGGAA---TTACAA-CT-ACAAACAAA---TAATTTA---ACGAACATATATGA-----AAAGTG-GAAATGAATAATA----GAAGGATGG----ACG----TTTA----ATAAA-ATAGTT-TACGT-------AA--AAG----TATATAAAACATGATTAGA--CGATAATTGT-T-TAGATTG---TAG----AATAGAG------CTCAGATAA-ACAGTGC----TTTCAACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GGAAA---CATGTAATG------TGTGACTCGAT--GACT--T--TGAA-----ACA---CTTC-C--ACCCGGCCTGT----CATCAGACCCCCTC-C--TTT----GTTTGGTTT------TTTTAC----CGAG---T-ACTCT-C--GACTAT-CGCTCCGACT-A-AGC-C-T--CCGGAGTCTAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAta
gi|3 : AAAAACCAATATTATTCAGAATC--CATTAAATTTTCTCTACAAAACGAACAG-TT-TCGAAACAAAA-TT-CCTGGATA-GTTGACTGACAAA---ACT--AGGAAGAGTGAGA-GTCAGTTAATTA--TTATTTCGAATAC-TCGTA--TAATGAAAGGATACATTGGAAAAGTCAATGA-TCCAGT-G---CCTAGGCTAATTA-GGG---AGTGAGTGAGAGAGGCCATCCCTCGAG-T-----GTATAC-----AAGCTGTTAA-TTTCAATTGAAGAAGAGAAGA--G---GAGCG----A-GAGAGTGT---------GAGAGAGAGTGTGA--GTGT-GA--------GAGAGAGTGA-----TGGAAATAAG-ACAATAAATCAAT-AGATTTCGTAATGCATTTTCTCGTGACATGC--TATATTAGATATTGAGGTACTTT--GTG---AGCGGGAAATAC---AGCCTGTC----GTCGTCATCAAGCTAAACACGTGTAA-----------ATATTTCA-CCAGA---CTT--TCAT--TA---AACA-TTACTATGT-TCTATTTTAA--CTG--AACAA--ATTTCA----AAACGAG------A----GAT-TGTA---ATT-------GTAGAT-TGT-TCGATT------------GGT-TCAGCCTT-ACG----TCGT--CAGCCCAATAC------GTG-----A---TT-CAA--T-ACAAACAGA---AGA-------------------GA-----GAATTG-A-AAC-AATAA-A----A-AG--TGG----A---------A----TGAA---------TAAG--------GAGGAAC----TATAT-CAA--------------AT--TTGTAT-TAGAT-G---TAGGA--AGTAGAG------CTCAGATAATCCAGC-CA---TTTC-ACCAGCTGAACG--T--T-----G-TAGCTG-----ATGCGC--GA--G--AA---C-TGTAATG------TTTGA-T-GAT--GACTGGT--TGAA------CA---CTTGGT--GC-------GT----GAGC-G-CTCCCT--------------TT-GTTT------TTTTAC----TGGA---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGCGT-C--C--GA---TA--TC-G-AC--T--AAGC---T-CT--------CCGATAAAAATTGACATCCCTAa
gi|4 : TCAACAAGGAGACTTATTCAGAATACAAAACA-TTAGTTTGTCTCTGATTTAAAGCTGGAAACGA--AGTTGATAAAAA-CG-GCCATCCATGAAGAT-TGTACACATTACAGTGTGTA-ATGTGTTC--ACTCTCGGTACCCCCAGTGTTAGCGTTGACGGTGCTCGTACCAGCAAAATACTGGAGTGCAGCGAAACTGTTACC--CTGACAAACCAA---AAATTTAGACTGCAACA-GTATGATATCGGATGTGAG-AATGAA--ATATGTCG-GGCGTAGTGACACGCGGTTATAGTCTTCGAACATGTTTA-ACGT-------AGGGAAGAGTTTGGAT-AATAATGATTAGCTTCGATATGTGTGTATAGATTGAGATAGGAGAAGT-GAGGTGTCCCGCAG-TGA-AGCGC-CCCCATTTC-ACCAGGTGAACTGTC--C-----GCTCTGCGGTGATAGTCGCGCGAAGGG-AAGACCGTGTAGTCCATCCCTTTGGCT-GACTCGACT--TAGTGAATCAGGACAACCCTTCATCTAC----CCTGTCTCAAATCAG-GCCCCTC-CTCCTCTGTAGTGT-GTTTGAGAACTTCTACTCTTCG-G---TGA--CTTC--GACTA--CGCTACGACTAACAGC-C-CTCC--GAG--TACCTCTGTAC--TTTAAGCGTTTGAT--------TCGAGTAAAATTGACATCCCTa
gi|5 : CAATGAGTACTC------AACTATCGCTATGTCATAACGACCATCGACT--ACATTTTTTTTTGCAATCA-AGCACTCATTAAAAA-AGCTTTTTAAATAATGTTCA-TAGATTCTATAAAATGCTTCAGTAT--AGT---TTTGTAAGTAAA-TCATGTTAGGGTAAATTCAAAACGAATTTTAATTTGTTCATGCTCAA-TCA----ATCATTTGAGTTGTGGATGTTGGTCTGTAAACATGATTCCAAAATCCACTGTTTGGATCATACTCTAAAAG---TCAT-------ATCCAATGACGGAAAAAATTAAATACATT-TACATGTAT-GTGATACTG--ta
gi|6 : tATGATTAGA--CGATAATTGTAT-TAAATTG---TAG-A--ACTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--TAGCTATAAGCTATTCT----TATGCGC-TAA--CG-TA---CATGTAATG------TATGACT-GAT--GACT--T--TGAA-----ACA---TTT-GT--AC----CCTGT----AA---G-TTCTCGC-C--C-C----ATTT----T------TCATAC----CGAG---T-A--CT-C--GACTAT-CGC------------C-C-C--C--GAG--TAC-TC-A-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAaac
gi|8 : --CTCAT--CAGCAAGATAC------ATA-ATAAA---TTACAATCT-ATGAACAATTTTAAAGTTA---T-GAACA-ATATGA-----AAAGCG-G-AGTGAATATCA----G-AGGATAG----ACA----TACC----TGAAG-AAAGTTATATGTAAAAAAAAAAAAAG----TATAT-AAACATGATTAGA--CCATg
gi|9 : C----ATTT-GTTT------GATCAC----AGAAGTTT-A--CT-CCCGACTAT-CGCT-CGACTAA-AGC-C-C--T--GAG--TAC-TC-G-AC-----AAGC---T-AT--------CCGA-TGAAA-TGATATCCCTAttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATAGTTGTTTCTTGGCTGGCTCATCAGCAAAATACATAGTAATTTACTCACTATAACCAAATAAAGTCATGAACGAATACCGCAATAGATGACAAATGTGTAGCAGGAGAAATAGAACGACATAGGATGTCAAACTAAAATACTAACAGTAAAATATGGAACAGTGTTTACGGTAGTT
Alignments
lowQualScore : 1111111111111
lowQualScore : 222222 11 2222 1 1 33333333 1 1 11 222 333333 1 2222 11 1 1 1 66666666666666 4444444 222 3333333333333 1 1 11 22222 1 111 1 1 1 222 1 11 11 22 1 1 2222222222 2222222222 1 1 11 1 111 1 1 1 1111111 33333333 1 1 1 11 1 1 1 11 1111111111 444444444 2222 2222222222222 1111 11 11 1 2 11 11 11 2222 1 1 2222 1 111 666666666666666666666666666666666666 1 111 11 222222222222222222 111 2222222222222222 22222 111111 444444444444444444444444444444444444444444444444 1111 111 1111 222222 2222 1 22222222222 11111 11 1111111111 2222222 11 11111 222222 111 22222222222 11111 33333333333 111111 1111 111 1 111 1111 11111111
lowQualScore : 999999 22 1 88 1 1 3333 1 5 5 66666666 5 1 5 1 88 000 7 888888 3 7 8888 99 2 0 3 2 33333333333333 3333333 333 7 9999999999999 1 5 5 88 77777 5 1 7 777 7 3 3 7 7 7 3 6 88 6 333 3 88 7 6 7 88 7 00 3 3 6 1 9999999999 5555555555 3 7 8888 2 88 0 3 222 6 7 6 3 7 3 2 6 9999999 3 88888888 0 22 0 0 2 33 2 3 0 0 0 1 33 3 3 9999999999 444444444 1111 4444444444444 3 1111 33 33 2 0 0 2 33 33 33 1111 0 0 2 1111 0 777 000000000000000000000000000000000000 2 0 333 11 555555555555555555 0 88 8 9 444 8888888888888888 00000 999 0 3 888888 5 222222222222222222222222222222222222222222222222 7777 8 5 99 11 3 8 0 444 6666 0 333333 0 8 8 5555 8 6 99999999999 77777 11 5555555555 3 8888888 1 8 11 33333 000000 444 99999999999 88888 666 8 44444444444 6 999999 0000 555 5 66 5 66 5 0 0 000 5 3333 66 66 66 4 4 66666 555 3 22222222
lowQualScore : ...... .. . .. . . .... . . . ........ . . . . .. ... . ...... . . .... .. . . . . .............. ....... ... . ............. . . . .. ..... . . . ... . . . . . . . . .. . ... . .. . . . .. . .. . . . . .......... .......... . . .... . .. . . ... . . . . . . . . ....... . ........ . .. . . . .. . . . . . . .. . . .......... ......... .... ............. . .... .. .. . . . . .. .. .. .... . . . .... . ... .................................... . . ... .. .................. . .. . . ... ................ ..... ... . . ...... . ................................................ .... . . .. .. . . . ... .... . ...... . . . .... . . ........... ..... .. .......... . ....... . . .. ..... ...... ... ........... ..... ... . ........... . ...... .... ... . .. . .. . . . ... . .... .. .. .. . . ..... ... . ........
lowQualScore : 000000 00 0 55 0 0 5555 0 5 5 00000000 0 0 5 0 00 555 3 333333 3 3 3333 33 0 7 3 0 33333333333333 3333333 333 3 0000000000000 0 5 0 00 00000 5 0 3 777 3 3 3 3 3 3 3 7 33 7 333 3 33 3 7 3 33 3 77 3 3 7 0 0000000000 3333333333 3 3 3333 0 33 7 3 333 7 3 7 3 3 3 0 7 0000000 7 55555555 0 22 0 0 5 88 5 5 0 0 0 0 88 2 2 3333333333 777777777 7777 0000000000000 2 5555 88 88 5 0 0 5 88 88 88 2222 0 0 5 2222 0 555 888888888888888888888888888888888888 5 0 555 00 888888888888888888 8 88 0 6 000 4444444444444444 00000 222 8 8 222222 0 444444444444444444444444444444444444444444444444 0000 0 0 22 88 8 0 8 000 8888 8 000000 8 0 0 0000 0 0 22222222222 88888 22 2222222222 8 0000000 0 0 00 00000 888888 000 22222222222 44444 222 0 77777777777 7 222222 6666 666 0 99 0 99 0 0 1 111 0 6666 11 11 33 0 0 44444 888 3 11111111
consensus : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAAC-AAAATTACCTGGAT-AGTTNACTGACAAA---ACT-CGGAAA--TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCNTAGGCTAATTA-GGAT----TGTGTAA---AG--CGCCCCTCGT-GTATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATACC-A-----GCCTGTCGT-G--ATCAAGCTAAA----CGTG----ATTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTACAA-CT-ACGAACAAA---AAANTT-A---TG-AACA-ATATGA-----AAAGTG-G-AATGAATAATA----G-AGGATGG----ACG----TATA----TNAAA-ATAGTTATACGT-------AAGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTC-C--CTC----GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
Reference ( family-2807 ) : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAAC-AAAATTACCTGGAT-AGTTNACTGACAAA---ACT-CAGAAA--TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCNTAGGCTAATTAGGGAT----TGTGTAA---AG--CGCCCCTCGT-GTATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATACCAA-----GCCTGTCGT-G--ATCAAGCTAAA------------ATTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTACAA-CT-ACGAACAAA---AAANTT-A---TG-AACA-ATATGA-----AAAGTG-G-AATGAATAATA----G-AGGATGG----ACG----TATA----TNAAA-ATAGTTATACGT-------AAGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTC-C--CTC----GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
gi|1 : CAACGAGTACTCGATCACAACTATCGCTCGGTCGTACCGATCATCGACTTAAAATTTTCAT----ACTCGTAGTACTCGTTAAAAATAGCCTTTT--------TTCAGTAGATTATA-AAGATGTTACAATATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAACTTAAA-TTAGTTGCAATTCGTTCATGTTCAGATTA----ATCATTAGAGTTA-GGATGTTGGTTAGTAAACATTCATCTGAAATTCACTGAATGGG-CACACT----AAG---T---AA-----AACCGATG-------AAAT---ATACATTATATATGAATTATGAAATTGCATGAACTCTCATATCTCTGAAATCCACTGTA-GGGCATACTTTAACG-ATCTTATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTT-----ATCACTCTGCGGAGAGAACAACAAACACAAATTTTAAAAGCCAGTATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATTGTCAAAAC-AAA-TTACC-GGAT-A-TTTACTGACAAATATACTTCAGAAA--TGAACTGTCAACTAATTAGTT-ATTT--AATACATCGTAAATAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCTTAGGCTAATTATGGATCTATTGTGTAA---AG--CGCCCCTCGT-GTATAACGCACACCTTCGAAGCTGTTAATTTTCA--TGAAAACAA-AA--CTGCACG-GCGCACTACAAGAATTTTCTCAGA-AAAGAAAAA-CGGCCCCGTATTAATTTTCACGGAAATAATGAATAGATA-AAATAAATATTA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACTTCTATTAT-TTAGATATTGAGGTACTTTTCATGCTA-GCAC--AATACCAA------CCTGTCGT-G--ATCAAGCTAA--------------TTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAAGAATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------ATA-CGGAA---TTACAA-CT-AC-AATAAA---AAAATT-AT--TG-AA-A-ATATGA-----AAAGTG-G-AATGAATAATA----G-A-GATGG----ACC----TATA----TCAAA-ATAGTTACACGT-------A---AAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TA-GA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAAT-------TGTGACT-GAT--GACT--T--TGAA-----ACA---CTT--T--AC----CCTGT----GATCAG-CCCCCTCTC--TTT----GTTT-GTTT------TTTTAA----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-T--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTGAAATTGACATCCCTA
gi|10 : AC----CGAG---T-A--CT-A--GATTAT-CGCC-CGAATCA-AGC-CTT--C--GAG--TAT-TC-G-GC--T--AGAG---T-AC--------CCGAGT-AAATTGACATACCTAc
gi|11 : aTAA----CGAGGA-T-A--CT-C--GACTATACTAT-CG-CTG---GC-C-TG-C--GAG--TAT-TC-G-ACATC--AGGC---T-AT--------TAGAGTAAAATTGACATCCTTgat
gi|12 : A-----TG-AAATAAG-ATGA-AAATAAA-TA--------------TTT-CT-GC-ACGTCT--TATATTAGATATTGATGTACTTTTCATg
gi|13 : a--C--GAG--TAA-TC-G-AC--T--AGGC---T-ATAATAGTATCCGAGTAAAATTGAAATCCCTA
gi|14 : AT-TT-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATTCC
gi|15 : --AGGC---T-AT--------CCGAGTAAAACTGACATTCCTAaagttac
gi|16 : C--T--AAGC---T-CT--------CCGAGTAAAATTGACATCCCTAtttaaaa
gi|2 : TTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTATTAAATCATTTGAGTT-TGGATGTTGGT-AGTAAACATGCATCTGAAATTCACTGTATGGG-CACACTTTAAAAGATCTCATGATGGAAAACCGATG-------AAAT---ATACATTATATATGAA-----AT------TGAACTGTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACAGATCTCATGATGGA--AAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGAAGGGA-CAACAAACACATATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACAAACAGATT-TCGAAACAAAAATTACCTGGATAAGTTA--TGA-AAA---ACT-CAGAAA--TAGACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTAGAAAAGTCAATGAGTCCAGTTGGACCATAGGCTAATT----AT----TGTGTAA---AG--CA-CCCTCGTGGTATAACGTACACCTTTGAAGCTGTTCTCTTTCA--TGAAAACAA-AAGACTGCACGAGCGCACTA-ACGAATTTTCTCAGACAAAGAAAAAACGTGCCCGTGT-AATTT-CACAGAAATAATGA--------AAATAAG-ATGA-AAATAAATTAGAT--CGGAATGCTTTC-TT-GT-ACTTCT--TGTATTAGATATTGAGGTACTTTTCATGCCAAACAC--AATACCCAGACCTGTCTGTCGT-G--ATCAAGCTAAAACACCGTGTAATATTATTTCAACCATTGACTTT--TCAT--TACAAAACAATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----AATCTGTA---ATT-------GT-------T-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------ATA-CGGAA---TTACAA-CT-ACAAACAAA---TAATTTAA---CG-AACATATATGA-----AAAGTG-GAAATGAATAATA----GAAGGATGG----ACG----TTTA----ATAAA-ATAGTT-TACGT-------AA--AAG----TATATAAAACATGATTAGA--CGATAATTGT-T-TAGATTG---TAG----AATAGAG------CTCAGATAA-ACAGTGC----TTTCAACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GGAAA---CATGTAATG------TGTGACTCGAT--GACT--T--TGAA-----ACA---CTTC-C--ACCCGGCCTGT----CATCAGACCCCCTC-C--TTT----GTTTGGTTT------TTTTAC----CGAG---T-ACTCT-C--GACTAT-CGCTCCGACT-A-AGC-C-T--CCGGAGTCTAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAta
gi|3 : AAAAACCAATATTATTCAGAATC--CATTAAATTTTCTCTACAAAACGAACAG-TT-TCGAAAC-AAAATT-CCTGGAT-AGTTGACTGACAAA---ACT-AGGAAGAGTGAGA-GTCAGTTAATTA--TTATTTCGAATAC-TCGTA--TAATGAAAGGATACATTGGAAAAGTCAATGA-TCCAG-TG---CCTAGGCTAATTAGGGAG----TGAGTGAGAGAGGCCATCCCTCGA-GT-----GTATAC-----AAGCTGTTAA-TTTCAATTGAAGAAGAGAAGA--G---GAGCG----A-GAGAGTGT---------GAGAGAGAGTGTGA--GTGT-GA--------GAGAGAGTGA-----TGGAAATAAG-ACAATAAATCAA-TAGATTTCGTAATGCATTTTCTCGTGACATGC--TATATTAGATATTGAGGTACTTT--GTG---AGCGGGAAATAC--A-----GCCTGTCGTCGTCATCAAGCTAAACACGTGTA----AATATTTCA-CCAGA---CTT--TCAT--TA---AAC-ATTACTATGT-TCTATTTTAA--CTG--AACAA--ATTTCA----AAACGAG------A----GAT-TGTA---ATT-------GTAGAT-TGT-TCGATT------------GGT-TCAGCCTT-ACG----TCGT--CAGCCCAATAC------GTG-----A---TT-CAA--T-ACAAACAGA---AGA--------------------GA-----GAATTG-A-AAC-AATAA-A----A-AG--TGG----A---------A----TGAA---------TAAG--------GAGGAAC----TATAT-CAA--------------AT--TTGTAT-TAGAT-G---TAGGA--AGTAGAG------CTCAGATAATCCAGC-CA---TTTC-ACCAGCTGAACG--T--T-----G-TAGCTG-----ATGCGC--GA--G--AA---C-TGTAATG------TTTGA-T-GAT--GACTGGT--TGAA------CA---CTTGGT--GC-------GT----GAGC-G-CTCCCT--------------TT-GTTT------TTTTAC----TGGA---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGCGT-C--C--GA---TA--TC-G-AC--T--AAGC---T-CT--------CCGATAAAAATTGACATCCCTAa
gi|4 : TCAACAAGGAGACTTATTCAGAATACAAAAC-ATTAGTTTGTCTCTGATTTAAAGCTGGAAACGA--AGTTGATAAAAA-CG-GCCATCCATGAAGAT-TGTACACATTACAGTGTGTA-ATGTGTTC--ACTCTCGGTACCCCCAGTGTTAGCGTTGACGGTGCTCGTACCAGCAAAATACTGGAGTGCAGCGAAACTGTTACC--CTGACAAACCAA---AAATTT-AGACTGCAACA-GTATGATATCGGATGTGAG-AATGAA--ATATGTCG-GGCGTAGTGACACGCGGTTATAGTCTTCGAACATGTTTA-ACGT-------AGGGAAGAGTTTGGAT-AATAATGATTAGCTTCGATATGTGTGTATAGATTGAGATAGGAGAAGT-GAGGTGTCCCGCAG-TGA-AGCGC-CCCCATTTC-ACCAGGTGAACTGTC--C-----GCTCTGCGGTGATAGTCGCGCGAAGGG-AAGACCGTGTAGTCCATCCCTTTGGCT-GACTCGACT--TAGTGAATCAGGACAACCCTTCATCTAC----CCTGTCTCAAATCAG-GCCCCTC-CTCCTCTGTAGTGT-GTTTGAGAACTTCTACTCTTCG-G---TGA--CTTC--GACTA--CGCTACGACTAACAGC-C-CTCC--GAG--TACCTCTGTAC--TTTAAGCGTTTGAT--------TCGAGTAAAATTGACATCCCTa
gi|5 : CAATGAGTACTC------AACTATCGCTATGTCATAACGACCATCGACT--ACATTTTTTTTTGCAATCA-AGCACTCATTAAAAA-AGCTTTTTAAATAATGTTCA-TAGATTCTATAAAATGCTTCAGTAT--AGT---TTTGTAAGTAAA-TCATGTTAGGGTAAATTCAAAACGAATTTTAATTTGTTCATGCTCAA-TCA----ATCATTTGAGTTGTGGATGTTGGTCTGTAAACATGATTCCAAAATCCACTGTTTGGATCATACTCTAAAAG---TCAT-------ATCCAATGACGGAAAAAATTAAATACATT-TACATGTAT-GTGATACTG--ta
gi|6 : tATGATTAGA--CGATAATTGTAT-TAAATTG---TAG-A--ACTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--TAGCTATAAGCTATTCT----TATGCGC-TAA--CG-TA---CATGTAATG------TATGACT-GAT--GACT--T--TGAA-----ACA---TTT-GT--AC----CCTGT----AA---G-TTCTCGC-C--C-C----ATTT----T------TCATAC----CGAG---T-A--CT-C--GACTAT-CGC------------C-C-C--C--GAG--TAC-TC-A-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAaac
gi|8 : --CTCAT--CAGCAAGATAC------ATA-ATAAA---TTACAATCT-ATGAACAATTTTAAAGTT-A---TG-AACA-ATATGA-----AAAGCG-G-AGTGAATATCA----G-AGGATAG----ACA----TACC----TGAAG-AAAGTTATATGTAAAAAAAAAAAAAG----TATAT-AAACATGATTAGA--CCATg
gi|9 : C----ATTT-GTTT------GATCAC----AGAAGTTT-A--CT-CCCGACTAT-CGCT-CGACTAA-AGC-C-C--T--GAG--TAC-TC-G-AC-----AAGC---T-AT--------CCGA-TGAAA-TGATATCCCTAttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATAGTTGTTTCTTGGCTGGCTCATCAGCAAAATACATAGTAATTTACTCACTATAACCAAATAAAGTCATGAACGAATACCGCAATAGATGACAAATGTGTAGCAGGAGAAATAGAACGACATAGGATGTCAAACTAAAATACTAACAGTAAAATATGGAACAGTGTTTACGGTAGTT
Alignments
lowQualScore : 222222 11 2222 1 1 33333333 1 1 11 222 333333 1 2222 11 1 1 1 66666666666666 4444444 222 3333333333333 1 1 11 22222 1 111 1 1 1 222 1 11 11 22 1 1 44444444444 2222222222 1 1 11 1 111 1 1 1 1111111 33333333 1 1 1 11 1 1 1 11 1111111111 333333333 2222 99999999999999999 1111 11 11 1 2 11 11 11 2222 1 1 2222 1 111 666666666666666666666666666666666666 1 111 11 222222222222222222 111 2222222222222222 22222 111111 444444444444444444444444444444444444444444444444 1111 111 1111 222222 2222 1 22222222222 11111 11 1111111111 2222222 11 11111 222222 111 22222222222 11111 33333333333 111111 1111 111 1 111 1111 11111111
lowQualScore : 999999 22 1 88 1 1 3333 1 5 5 66666666 5 1 5 1 88 000 7 888888 3 7 8888 99 2 0 3 2 33333333333333 3333333 333 7 9999999999999 1 5 5 88 77777 5 1 7 777 7 3 3 7 7 7 3 6 88 6 333 3 0 88 7 6 7 88 7 00 3 3 6 1 99999999999 5555555555 3 7 8888 2 88 0 3 222 6 7 6 3 7 3 2 6 9999999 3 88888888 0 22 0 0 2 33 2 3 0 0 0 1 33 3 3 9999999999 444444444 1111 11111111111111111 3 1111 33 33 2 0 0 2 33 33 33 1111 0 0 2 1111 0 777 000000000000000000000000000000000000 2 0 333 11 555555555555555555 0 88 8 9 444 8888888888888888 00000 999 0 3 888888 5 222222222222222222222222222222222222222222222222 7777 8 5 99 11 3 8 0 444 6666 0 333333 0 8 8 5555 8 6 99999999999 77777 11 5555555555 3 8888888 1 8 11 33333 000000 444 99999999999 88888 666 8 44444444444 6 999999 0000 555 5 66 5 66 5 0 0 000 5 3333 66 66 66 4 4 66666 555 3 22222222
lowQualScore : ...... .. . .. . . .... . . . ........ . . . . .. ... . ...... . . .... .. . . . . .............. ....... ... . ............. . . . .. ..... . . . ... . . . . . . . . .. . ... . . .. . . . .. . .. . . . . ........... .......... . . .... . .. . . ... . . . . . . . . ....... . ........ . .. . . . .. . . . . . . .. . . .......... ......... .... ................. . .... .. .. . . . . .. .. .. .... . . . .... . ... .................................... . . ... .. .................. . .. . . ... ................ ..... ... . . ...... . ................................................ .... . . .. .. . . . ... .... . ...... . . . .... . . ........... ..... .. .......... . ....... . . .. ..... ...... ... ........... ..... ... . ........... . ...... .... ... . .. . .. . . . ... . .... .. .. .. . . ..... ... . ........
lowQualScore : 000000 00 0 55 0 0 5555 0 5 5 00000000 0 0 5 0 00 555 3 333333 3 3 3333 33 0 7 3 0 33333333333333 3333333 333 3 0000000000000 0 5 0 00 00000 5 0 3 777 3 3 3 3 3 3 3 7 33 7 333 3 7 33 3 7 3 33 3 77 3 3 7 0 00000000000 3333333333 3 3 3333 0 33 7 3 333 7 3 7 3 3 3 0 7 0000000 7 55555555 0 22 0 0 5 88 5 5 0 0 0 0 88 2 2 3333333333 333333333 7777 77777777777777777 2 5555 88 88 5 0 0 5 88 88 88 2222 0 0 5 2222 0 555 888888888888888888888888888888888888 5 0 555 00 888888888888888888 8 88 0 6 000 4444444444444444 00000 222 8 8 222222 0 444444444444444444444444444444444444444444444444 0000 0 0 22 88 8 0 8 000 8888 8 000000 8 0 0 0000 0 0 22222222222 88888 22 2222222222 8 0000000 0 0 00 00000 888888 000 22222222222 44444 222 0 77777777777 7 222222 6666 666 0 99 0 99 0 0 1 111 0 6666 11 11 33 0 0 44444 888 3 11111111
consensus : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAAC-AAAATTACCTGGAT-AGTTNACTGACAAA---ACT-CGGAAA--TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCNTAGGCTAATTA-GG-AT----TGTGTAA---AG--CGCCCCTCGT-GTATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATA-CCA-----GCCTGTCGT-G--ATCAAGCTAAA----C----GTG----ATTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTACAA-CT-ACGAACAAA---AAANTT-A---TG-AACA-ATATGA-----AAAGTG-G-AATGAATAATA----G-AGGATGG----ACG----TATA----TNAAA-ATAGTTATACGT-------AAGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTC-C--CTC----GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
Reference ( family-2807 ) : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAAC-AAAATTACCTGGAT-AGTTNACTGACAAA---ACT-CGGAAA--TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCNTAGGCTAATTA-GG-AT----TGTGTAA---AG--CGCCCCTCGT-GTATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATA-CCA-----GCCTGTCGT-G--ATCAAGCTAAA----C----GTG----ATTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTACAA-CT-ACGAACAAA---AAANTT-A---TG-AACA-ATATGA-----AAAGTG-G-AATGAATAATA----G-AGGATGG----ACG----TATA----TNAAA-ATAGTTATACGT-------AAGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTC-C--CTC----GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
gi|1 : CAACGAGTACTCGATCACAACTATCGCTCGGTCGTACCGATCATCGACTTAAAATTTTCAT----ACTCGTAGTACTCGTTAAAAATAGCCTTTT--------TTCAGTAGATTATA-AAGATGTTACAATATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAACTTAAA-TTAGTTGCAATTCGTTCATGTTCAGATTA----ATCATTAGAGTTA-GGATGTTGGTTAGTAAACATTCATCTGAAATTCACTGAATGGG-CACACT----AAG---T---AA-----AACCGATG-------AAAT---ATACATTATATATGAATTATGAAATTGCATGAACTCTCATATCTCTGAAATCCACTGTA-GGGCATACTTTAACG-ATCTTATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTT-----ATCACTCTGCGGAGAGAACAACAAACACAAATTTTAAAAGCCAGTATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATTGTCAAAAC-AAA-TTACC-GGAT-A-TTTACTGACAAATATACTTCAGAAA--TGAACTGTCAACTAATTAGTT-ATTT--AATACATCGTAAATAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCTTAGGCTAATTATGG-ATCTATTGTGTAA---AG--CGCCCCTCGT-GTATAACGCACACCTTCGAAGCTGTTAATTTTCA--TGAAAACAA-AA--CTGCACG-GCGCACTACAAGAATTTTCTCAGA-AAAGAAAAA-CGGCCCCGTATTAATTTTCACGGAAATAATGAATAGATA-AAATAAATATTA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACTTCTATTAT-TTAGATATTGAGGTACTTTTCATGCTA-GCAC--AATA-CCA-----ACCTGTCGT-G--ATCAAGCTAA------------------TTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAAGAATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------ATA-CGGAA---TTACAA-CT-AC-AATAAA---AAAATT-AT--TG-AA-A-ATATGA-----AAAGTG-G-AATGAATAATA----G-A-GATGG----ACC----TATA----TCAAA-ATAGTTACACGT-------A---AAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TA-GA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAAT-------TGTGACT-GAT--GACT--T--TGAA-----ACA---CTT--T--AC----CCTGT----GATCAG-CCCCCTCTC--TTT----GTTT-GTTT------TTTTAA----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-T--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTGAAATTGACATCCCTA
gi|10 : AC----CGAG---T-A--CT-A--GATTAT-CGCC-CGAATCA-AGC-CTT--C--GAG--TAT-TC-G-GC--T--AGAG---T-AC--------CCGAGT-AAATTGACATACCTAc
gi|11 : aTAA----CGAGGA-T-A--CT-C--GACTATACTAT-CG-CTG---GC-C-TG-C--GAG--TAT-TC-G-ACATC--AGGC---T-AT--------TAGAGTAAAATTGACATCCTTgat
gi|12 : A-----TG-AAATAAG-ATGA-AAATAAA-TA--------------TTT-CT-GC-ACGTCT--TATATTAGATATTGATGTACTTTTCATg
gi|13 : a--C--GAG--TAA-TC-G-AC--T--AGGC---T-ATAATAGTATCCGAGTAAAATTGAAATCCCTA
gi|14 : AT-TT-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATTCC
gi|15 : --AGGC---T-AT--------CCGAGTAAAACTGACATTCCTAaagttac
gi|16 : C--T--AAGC---T-CT--------CCGAGTAAAATTGACATCCCTAtttaaaa
gi|2 : TTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTATTAAATCATTTGAGTT-TGGATGTTGGT-AGTAAACATGCATCTGAAATTCACTGTATGGG-CACACTTTAAAAGATCTCATGATGGAAAACCGATG-------AAAT---ATACATTATATATGAA-----AT------TGAACTGTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACAGATCTCATGATGGA--AAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGAAGGGA-CAACAAACACATATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACAAACAGATT-TCGAAACAAAAATTACCTGGATAAGTTA--TGA-AAA---ACT-CAGAAA--TAGACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTAGAAAAGTCAATGAGTCCAGTTGGACCATAGGCTAATT-----AT----TGTGTAA---AG--CA-CCCTCGTGGTATAACGTACACCTTTGAAGCTGTTCTCTTTCA--TGAAAACAA-AAGACTGCACGAGCGCACTA-ACGAATTTTCTCAGACAAAGAAAAAACGTGCCCGTGT-AATTT-CACAGAAATAATGA--------AAATAAG-ATGA-AAATAAATTAGAT--CGGAATGCTTTC-TT-GT-ACTTCT--TGTATTAGATATTGAGGTACTTTTCATGCCAAACAC--AATACCCAGACCTGTCTGTCGT-G--ATCAAGCTAAAACACC----GTGTAATATTATTTCAACCATTGACTTT--TCAT--TACAAAACAATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----AATCTGTA---ATT-------GT-------T-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------ATA-CGGAA---TTACAA-CT-ACAAACAAA---TAATTTAA---CG-AACATATATGA-----AAAGTG-GAAATGAATAATA----GAAGGATGG----ACG----TTTA----ATAAA-ATAGTT-TACGT-------AA--AAG----TATATAAAACATGATTAGA--CGATAATTGT-T-TAGATTG---TAG----AATAGAG------CTCAGATAA-ACAGTGC----TTTCAACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GGAAA---CATGTAATG------TGTGACTCGAT--GACT--T--TGAA-----ACA---CTTC-C--ACCCGGCCTGT----CATCAGACCCCCTC-C--TTT----GTTTGGTTT------TTTTAC----CGAG---T-ACTCT-C--GACTAT-CGCTCCGACT-A-AGC-C-T--CCGGAGTCTAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAta
gi|3 : AAAAACCAATATTATTCAGAATC--CATTAAATTTTCTCTACAAAACGAACAG-TT-TCGAAAC-AAAATT-CCTGGAT-AGTTGACTGACAAA---ACT-AGGAAGAGTGAGA-GTCAGTTAATTA--TTATTTCGAATAC-TCGTA--TAATGAAAGGATACATTGGAAAAGTCAATGA-TCCAG-TG---CCTAGGCTAATTA-GGGAG----TGAGTGAGAGAGGCCATCCCTCGA-GT-----GTATAC-----AAGCTGTTAA-TTTCAATTGAAGAAGAGAAGA--G---GAGCG----A-GAGAGTGT---------GAGAGAGAGTGTGA--GTGT-GA--------GAGAGAGTGA-----TGGAAATAAG-ACAATAAATCAA-TAGATTTCGTAATGCATTTTCTCGTGACATGC--TATATTAGATATTGAGGTACTTT--GTG---AGCGGGAAATA-C-A-----GCCTGTCGTCGTCATCAAGCTAAA----CACGTGTA----AATATTTCA-CCAGA---CTT--TCAT--TA---AAC-ATTACTATGT-TCTATTTTAA--CTG--AACAA--ATTTCA----AAACGAG------A----GAT-TGTA---ATT-------GTAGAT-TGT-TCGATT------------GGT-TCAGCCTT-ACG----TCGT--CAGCCCAATAC------GTG-----A---TT-CAA--T-ACAAACAGA---AGA--------------------GA-----GAATTG-A-AAC-AATAA-A----A-AG--TGG----A---------A----TGAA---------TAAG--------GAGGAAC----TATAT-CAA--------------AT--TTGTAT-TAGAT-G---TAGGA--AGTAGAG------CTCAGATAATCCAGC-CA---TTTC-ACCAGCTGAACG--T--T-----G-TAGCTG-----ATGCGC--GA--G--AA---C-TGTAATG------TTTGA-T-GAT--GACTGGT--TGAA------CA---CTTGGT--GC-------GT----GAGC-G-CTCCCT--------------TT-GTTT------TTTTAC----TGGA---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGCGT-C--C--GA---TA--TC-G-AC--T--AAGC---T-CT--------CCGATAAAAATTGACATCCCTAa
gi|4 : TCAACAAGGAGACTTATTCAGAATACAAAAC-ATTAGTTTGTCTCTGATTTAAAGCTGGAAACGA--AGTTGATAAAAA-CG-GCCATCCATGAAGAT-TGTACACATTACAGTGTGTA-ATGTGTTC--ACTCTCGGTACCCCCAGTGTTAGCGTTGACGGTGCTCGTACCAGCAAAATACTGGAGTGCAGCGAAACTGTTACC--CTGACAAACCAA---AAATTT-AGACTGCAACA-GTATGATATCGGATGTGAG-AATGAA--ATATGTCG-GGCGTAGTGACACGCGGTTATAGTCTTCGAACATGTTTA-ACGT-------AGGGAAGAGTTTGGAT-AATAATGATTAGCTTCGATATGTGTGTATAGATTGAGATAGGAGAAGT-GAGGTGTCCCGCAG-TGA-AGCGC-CCCCATTTC-ACCAGGTGAACTGTC--C-----GCTCTGCGGTGATAGTCGCGCGAAGGG-AAGACCGTGTAGTCCATCCCTTTGGCT-GACTCGACT--TAGTGAATCAGGACAACCCTTCATCTAC----CCTGTCTCAAATCAG-GCCCCTC-CTCCTCTGTAGTGT-GTTTGAGAACTTCTACTCTTCG-G---TGA--CTTC--GACTA--CGCTACGACTAACAGC-C-CTCC--GAG--TACCTCTGTAC--TTTAAGCGTTTGAT--------TCGAGTAAAATTGACATCCCTa
gi|5 : CAATGAGTACTC------AACTATCGCTATGTCATAACGACCATCGACT--ACATTTTTTTTTGCAATCA-AGCACTCATTAAAAA-AGCTTTTTAAATAATGTTCA-TAGATTCTATAAAATGCTTCAGTAT--AGT---TTTGTAAGTAAA-TCATGTTAGGGTAAATTCAAAACGAATTTTAATTTGTTCATGCTCAA-TCA----ATCATTTGAGTTGTGGATGTTGGTCTGTAAACATGATTCCAAAATCCACTGTTTGGATCATACTCTAAAAG---TCAT-------ATCCAATGACGGAAAAAATTAAATACATT-TACATGTAT-GTGATACTG--ta
gi|6 : tATGATTAGA--CGATAATTGTAT-TAAATTG---TAG-A--ACTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--TAGCTATAAGCTATTCT----TATGCGC-TAA--CG-TA---CATGTAATG------TATGACT-GAT--GACT--T--TGAA-----ACA---TTT-GT--AC----CCTGT----AA---G-TTCTCGC-C--C-C----ATTT----T------TCATAC----CGAG---T-A--CT-C--GACTAT-CGC------------C-C-C--C--GAG--TAC-TC-A-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAaac
gi|8 : --CTCAT--CAGCAAGATAC------ATA-ATAAA---TTACAATCT-ATGAACAATTTTAAAGTT-A---TG-AACA-ATATGA-----AAAGCG-G-AGTGAATATCA----G-AGGATAG----ACA----TACC----TGAAG-AAAGTTATATGTAAAAAAAAAAAAAG----TATAT-AAACATGATTAGA--CCATg
gi|9 : C----ATTT-GTTT------GATCAC----AGAAGTTT-A--CT-CCCGACTAT-CGCT-CGACTAA-AGC-C-C--T--GAG--TAC-TC-G-AC-----AAGC---T-AT--------CCGA-TGAAA-TGATATCCCTAttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATAGTTGTTTCTTGGCTGGCTCATCAGCAAAATACATAGTAATTTACTCACTATAACCAAATAAAGTCATGAACGAATACCGCAATAGATGACAAATGTGTAGCAGGAGAAATAGAACGACATAGGATGTCAAACTAAAATACTAACAGTAAAATATGGAACAGTGTTTACGGTAGTT
Alignments
lowQualScore : 222222 11 2222 1 1 33333333 1 1 11 222 333333 1 2222 11 1 1 1 66666666666666 4444444 222 3333333333333 1 1 11 22222 1 111 1 1 1 222 1 11 11 22 1 1 44444444444 2222222222 1 1 11 1 111 1 1 1 1111111 33333333 1 1 1 11 1 1 1 11 1111111111 333333333 2222 99999999999999999 1111 11 11 1 2 11 11 11 2222 1 1 2222 1 111 666666666666666666666666666666666666 1 111 11 222222222222222222 111 2222222222222222 22222 111111 444444444444444444444444444444444444444444444444 1111 111 1111 222222 2222 1 22222222222 11111 11 1111111111 2222222 11 11111 222222 111 22222222222 11111 33333333333 111111 1111 111 1 111 1111 11111111
lowQualScore : 999999 22 1 88 1 1 3333 1 5 5 66666666 5 1 5 1 88 000 7 888888 3 7 8888 99 2 0 3 2 33333333333333 3333333 333 7 9999999999999 1 5 5 88 77777 5 1 7 777 7 3 3 7 7 7 3 6 88 6 333 3 0 88 7 6 7 88 7 00 3 3 6 1 99999999999 5555555555 3 7 8888 2 88 0 3 222 6 7 6 3 7 3 2 6 9999999 3 88888888 0 22 0 0 2 33 2 3 0 0 0 1 33 3 3 9999999999 444444444 1111 11111111111111111 3 1111 33 33 2 0 0 2 33 33 33 1111 0 0 2 1111 0 777 000000000000000000000000000000000000 2 0 333 11 555555555555555555 0 88 8 9 444 8888888888888888 00000 999 0 3 888888 5 222222222222222222222222222222222222222222222222 7777 8 5 99 11 3 8 0 444 6666 0 333333 0 8 8 5555 8 6 99999999999 77777 11 5555555555 3 8888888 1 8 11 33333 000000 444 99999999999 88888 666 8 44444444444 6 999999 0000 555 5 66 5 66 5 0 0 000 5 3333 66 66 66 4 4 66666 555 3 22222222
lowQualScore : ...... .. . .. . . .... . . . ........ . . . . .. ... . ...... . . .... .. . . . . .............. ....... ... . ............. . . . .. ..... . . . ... . . . . . . . . .. . ... . . .. . . . .. . .. . . . . ........... .......... . . .... . .. . . ... . . . . . . . . ....... . ........ . .. . . . .. . . . . . . .. . . .......... ......... .... ................. . .... .. .. . . . . .. .. .. .... . . . .... . ... .................................... . . ... .. .................. . .. . . ... ................ ..... ... . . ...... . ................................................ .... . . .. .. . . . ... .... . ...... . . . .... . . ........... ..... .. .......... . ....... . . .. ..... ...... ... ........... ..... ... . ........... . ...... .... ... . .. . .. . . . ... . .... .. .. .. . . ..... ... . ........
lowQualScore : 000000 00 0 55 0 0 5555 0 5 5 00000000 0 0 5 0 00 555 3 333333 3 3 3333 33 0 7 3 0 33333333333333 3333333 333 3 0000000000000 0 5 0 00 00000 5 0 3 777 3 3 3 3 3 3 3 7 33 7 333 3 7 33 3 7 3 33 3 77 3 3 7 0 00000000000 3333333333 3 3 3333 0 33 7 3 333 7 3 7 3 3 3 0 7 0000000 7 55555555 0 22 0 0 5 88 5 5 0 0 0 0 88 2 2 3333333333 333333333 7777 77777777777777777 2 5555 88 88 5 0 0 5 88 88 88 2222 0 0 5 2222 0 555 888888888888888888888888888888888888 5 0 555 00 888888888888888888 8 88 0 6 000 4444444444444444 00000 222 8 8 222222 0 444444444444444444444444444444444444444444444444 0000 0 0 22 88 8 0 8 000 8888 8 000000 8 0 0 0000 0 0 22222222222 88888 22 2222222222 8 0000000 0 0 00 00000 888888 000 22222222222 44444 222 0 77777777777 7 222222 6666 666 0 99 0 99 0 0 1 111 0 6666 11 11 33 0 0 44444 888 3 11111111
consensus : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAAC-AAAATTACCTGGAT-AGTTNACTGACAAA---ACT-CGGAAA--TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCNTAGGCTAATTA-GG-AT----TGTGTAA---AG--CGCCCCTCGT-GTATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATA-CCA-----GCCTGTCGT-G--ATCAAGCTAAA----C----GTG----ATTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTACAA-CT-ACGAACAAA---AAANTT-A---TG-AACA-ATATGA-----AAAGTG-G-AATGAATAATA----G-AGGATGG----ACG----TATA----TNAAA-ATAGTTATACGT-------AAGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTC-C--CTC----GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
Reference ( family-2807 ) : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAAC-AAAATTACCTGGAT-AGTTNACTGACAAA---ACT-CGGAAA--TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCNTAGGCTAATTA-GG-AT----TGTGTAA---AG--CGCCCCTCGT-GTATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATA-CCA-----GCCTGTCGT-G--ATCAAGCTAAA----C----GTG----ATTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTACAA-CT-ACGAACAAA---AAANTT-A---TG-AACA-ATATGA-----AAAGTG-G-AATGAATAATA----G-AGGATGG----ACG----TATA----TNAAA-ATAGTTATACGT-------AAGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTC-C--CTC----GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
gi|1 : CAACGAGTACTCGATCACAACTATCGCTCGGTCGTACCGATCATCGACTTAAAATTTTCAT----ACTCGTAGTACTCGTTAAAAATAGCCTTTT--------TTCAGTAGATTATA-AAGATGTTACAATATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAACTTAAA-TTAGTTGCAATTCGTTCATGTTCAGATTA----ATCATTAGAGTTA-GGATGTTGGTTAGTAAACATTCATCTGAAATTCACTGAATGGG-CACACT----AAG---T---AA-----AACCGATG-------AAAT---ATACATTATATATGAATTATGAAATTGCATGAACTCTCATATCTCTGAAATCCACTGTA-GGGCATACTTTAACG-ATCTTATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTT-----ATCACTCTGCGGAGAGAACAACAAACACAAATTTTAAAAGCCAGTATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATTGTCAAAAC-AAA-TTACC-GGAT-A-TTTACTGACAAATATACTTCAGAAA--TGAACTGTCAACTAATTAGTT-ATTT--AATACATCGTAAATAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCTTAGGCTAATTATGG-ATCTATTGTGTAA---AG--CGCCCCTCGT-GTATAACGCACACCTTCGAAGCTGTTAATTTTCA--TGAAAACAA-AA--CTGCACG-GCGCACTACAAGAATTTTCTCAGA-AAAGAAAAA-CGGCCCCGTATTAATTTTCACGGAAATAATGAATAGATA-AAATAAATATTA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACTTCTATTAT-TTAGATATTGAGGTACTTTTCATGCTA-GCAC--AATA-CCA-----ACCTGTCGT-G--ATCAAGCTAA------------------TTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAAGAATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------ATA-CGGAA---TTACAA-CT-AC-AATAAA---AAAATT-AT--TG-AA-A-ATATGA-----AAAGTG-G-AATGAATAATA----G-A-GATGG----ACC----TATA----TCAAA-ATAGTTACACGT-------A---AAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TA-GA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAAT-------TGTGACT-GAT--GACT--T--TGAA-----ACA---CTT--T--AC----CCTGT----GATCAG-CCCCCTCTC--TTT----GTTT-GTTT------TTTTAA----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-T--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTGAAATTGACATCCCTA
gi|10 : AC----CGAG---T-A--CT-A--GATTAT-CGCC-CGAATCA-AGC-CTT--C--GAG--TAT-TC-G-GC--T--AGAG---T-AC--------CCGAGT-AAATTGACATACCTAc
gi|11 : aTAA----CGAGGA-T-A--CT-C--GACTATACTAT-CG-CTG---GC-C-TG-C--GAG--TAT-TC-G-ACATC--AGGC---T-AT--------TAGAGTAAAATTGACATCCTTgat
gi|12 : A-----TG-AAATAAG-ATGA-AAATAAA-TA--------------TTT-CT-GC-ACGTCT--TATATTAGATATTGATGTACTTTTCATg
gi|13 : a--C--GAG--TAA-TC-G-AC--T--AGGC---T-ATAATAGTATCCGAGTAAAATTGAAATCCCTA
gi|14 : AT-TT-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATTCC
gi|15 : --AGGC---T-AT--------CCGAGTAAAACTGACATTCCTAaagttac
gi|16 : C--T--AAGC---T-CT--------CCGAGTAAAATTGACATCCCTAtttaaaa
gi|2 : TTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTATTAAATCATTTGAGTT-TGGATGTTGGT-AGTAAACATGCATCTGAAATTCACTGTATGGG-CACACTTTAAAAGATCTCATGATGGAAAACCGATG-------AAAT---ATACATTATATATGAA-----AT------TGAACTGTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACAGATCTCATGATGGA--AAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGAAGGGA-CAACAAACACATATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACAAACAGATT-TCGAAACAAAAATTACCTGGATAAGTTA--TGA-AAA---ACT-CAGAAA--TAGACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTAGAAAAGTCAATGAGTCCAGTTGGACCATAGGCTAATT-----AT----TGTGTAA---AG--CA-CCCTCGTGGTATAACGTACACCTTTGAAGCTGTTCTCTTTCA--TGAAAACAA-AAGACTGCACGAGCGCACTA-ACGAATTTTCTCAGACAAAGAAAAAACGTGCCCGTGT-AATTT-CACAGAAATAATGA--------AAATAAG-ATGA-AAATAAATTAGAT--CGGAATGCTTTC-TT-GT-ACTTCT--TGTATTAGATATTGAGGTACTTTTCATGCCAAACAC--AATACCCAGACCTGTCTGTCGT-G--ATCAAGCTAAAACACC----GTGTAATATTATTTCAACCATTGACTTT--TCAT--TACAAAACAATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----AATCTGTA---ATT-------GT-------T-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------ATA-CGGAA---TTACAA-CT-ACAAACAAA---TAATTTAA---CG-AACATATATGA-----AAAGTG-GAAATGAATAATA----GAAGGATGG----ACG----TTTA----ATAAA-ATAGTT-TACGT-------AA--AAG----TATATAAAACATGATTAGA--CGATAATTGT-T-TAGATTG---TAG----AATAGAG------CTCAGATAA-ACAGTGC----TTTCAACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GGAAA---CATGTAATG------TGTGACTCGAT--GACT--T--TGAA-----ACA---CTTC-C--ACCCGGCCTGT----CATCAGACCCCCTC-C--TTT----GTTTGGTTT------TTTTAC----CGAG---T-ACTCT-C--GACTAT-CGCTCCGACT-A-AGC-C-T--CCGGAGTCTAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAta
gi|3 : AAAAACCAATATTATTCAGAATC--CATTAAATTTTCTCTACAAAACGAACAG-TT-TCGAAAC-AAAATT-CCTGGAT-AGTTGACTGACAAA---ACT-AGGAAGAGTGAGA-GTCAGTTAATTA--TTATTTCGAATAC-TCGTA--TAATGAAAGGATACATTGGAAAAGTCAATGA-TCCAG-TG---CCTAGGCTAATTA-GGGAG----TGAGTGAGAGAGGCCATCCCTCGA-GT-----GTATAC-----AAGCTGTTAA-TTTCAATTGAAGAAGAGAAGA--G---GAGCG----A-GAGAGTGT---------GAGAGAGAGTGTGA--GTGT-GA--------GAGAGAGTGA-----TGGAAATAAG-ACAATAAATCAA-TAGATTTCGTAATGCATTTTCTCGTGACATGC--TATATTAGATATTGAGGTACTTT--GTG---AGCGGGAAATA-C-A-----GCCTGTCGTCGTCATCAAGCTAAA----CACGTGTA----AATATTTCA-CCAGA---CTT--TCAT--TA---AAC-ATTACTATGT-TCTATTTTAA--CTG--AACAA--ATTTCA----AAACGAG------A----GAT-TGTA---ATT-------GTAGAT-TGT-TCGATT------------GGT-TCAGCCTT-ACG----TCGT--CAGCCCAATAC------GTG-----A---TT-CAA--T-ACAAACAGA---AGA--------------------GA-----GAATTG-A-AAC-AATAA-A----A-AG--TGG----A---------A----TGAA---------TAAG--------GAGGAAC----TATAT-CAA--------------AT--TTGTAT-TAGAT-G---TAGGA--AGTAGAG------CTCAGATAATCCAGC-CA---TTTC-ACCAGCTGAACG--T--T-----G-TAGCTG-----ATGCGC--GA--G--AA---C-TGTAATG------TTTGA-T-GAT--GACTGGT--TGAA------CA---CTTGGT--GC-------GT----GAGC-G-CTCCCT--------------TT-GTTT------TTTTAC----TGGA---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGCGT-C--C--GA---TA--TC-G-AC--T--AAGC---T-CT--------CCGATAAAAATTGACATCCCTAa
gi|4 : TCAACAAGGAGACTTATTCAGAATACAAAAC-ATTAGTTTGTCTCTGATTTAAAGCTGGAAACGA--AGTTGATAAAAA-CG-GCCATCCATGAAGAT-TGTACACATTACAGTGTGTA-ATGTGTTC--ACTCTCGGTACCCCCAGTGTTAGCGTTGACGGTGCTCGTACCAGCAAAATACTGGAGTGCAGCGAAACTGTTACC--CTGACAAACCAA---AAATTT-AGACTGCAACA-GTATGATATCGGATGTGAG-AATGAA--ATATGTCG-GGCGTAGTGACACGCGGTTATAGTCTTCGAACATGTTTA-ACGT-------AGGGAAGAGTTTGGAT-AATAATGATTAGCTTCGATATGTGTGTATAGATTGAGATAGGAGAAGT-GAGGTGTCCCGCAG-TGA-AGCGC-CCCCATTTC-ACCAGGTGAACTGTC--C-----GCTCTGCGGTGATAGTCGCGCGAAGGG-AAGACCGTGTAGTCCATCCCTTTGGCT-GACTCGACT--TAGTGAATCAGGACAACCCTTCATCTAC----CCTGTCTCAAATCAG-GCCCCTC-CTCCTCTGTAGTGT-GTTTGAGAACTTCTACTCTTCG-G---TGA--CTTC--GACTA--CGCTACGACTAACAGC-C-CTCC--GAG--TACCTCTGTAC--TTTAAGCGTTTGAT--------TCGAGTAAAATTGACATCCCTa
gi|5 : CAATGAGTACTC------AACTATCGCTATGTCATAACGACCATCGACT--ACATTTTTTTTTGCAATCA-AGCACTCATTAAAAA-AGCTTTTTAAATAATGTTCA-TAGATTCTATAAAATGCTTCAGTAT--AGT---TTTGTAAGTAAA-TCATGTTAGGGTAAATTCAAAACGAATTTTAATTTGTTCATGCTCAA-TCA----ATCATTTGAGTTGTGGATGTTGGTCTGTAAACATGATTCCAAAATCCACTGTTTGGATCATACTCTAAAAG---TCAT-------ATCCAATGACGGAAAAAATTAAATACATT-TACATGTAT-GTGATACTG--ta
gi|6 : tATGATTAGA--CGATAATTGTAT-TAAATTG---TAG-A--ACTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--TAGCTATAAGCTATTCT----TATGCGC-TAA--CG-TA---CATGTAATG------TATGACT-GAT--GACT--T--TGAA-----ACA---TTT-GT--AC----CCTGT----AA---G-TTCTCGC-C--C-C----ATTT----T------TCATAC----CGAG---T-A--CT-C--GACTAT-CGC------------C-C-C--C--GAG--TAC-TC-A-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAaac
gi|8 : --CTCAT--CAGCAAGATAC------ATA-ATAAA---TTACAATCT-ATGAACAATTTTAAAGTT-A---TG-AACA-ATATGA-----AAAGCG-G-AGTGAATATCA----G-AGGATAG----ACA----TACC----TGAAG-AAAGTTATATGTAAAAAAAAAAAAAG----TATAT-AAACATGATTAGA--CCATg
gi|9 : C----ATTT-GTTT------GATCAC----AGAAGTTT-A--CT-CCCGACTAT-CGCT-CGACTAA-AGC-C-C--T--GAG--TAC-TC-G-AC-----AAGC---T-AT--------CCGA-TGAAA-TGATATCCCTAttt
blockSeqs : . AT A . C T TTGC A . . AAATAATG . C T T . . A TGTTAG A A TTAA GT C T T ATCTCATGATGGAA ACGGAAA TAA A TGTGATACTG G T G . GAATT . T A TAC A . A A A T A G GA C . . AG T G T CG A A G T G A AGGGAG GAGAGGCCAT G A CTTT C AT G GAC C A C . T C A C AATTT A TGG . TG T T G TT G T T C G G . A T CCAAACAC CCCAGACCT CGTC AACACCGTGTAAT A TGAC AT AA C A C C AG GA . TAAA A A C TGAA C CAC ACAGTGTGTAATGTGTTCACTCTCGGTACCCCC G G GTG AC TGGAGTGCAGCGAAACTG AT G A TTT TTTAGACTGCAACA TATCG GA T TGTCG G TGACACGCGGTTATAGTCTTCGAACATGTTTAACGTAGGG AGTT A C TT AA A A AGA GAGA GTGTCC T G CCCA A C TAGCTATAA GTGAT GC AGGGAAGAC A CCATCCC G C TC GGT TCAGGA ACC CCACCCGG CTCAA TCA A CTCCTCTGTA G GAGAAC TCTT GTT G CT T CC A C AAC G CTC CG TC CC T T ATC GTT G AATAGTAT
blockSeqs : . . . . . T . . C TCAT . . . AT . A . . . A . T . G A . . . . . . T . . . . . . C AT AGCA . . . . . . GA . A . . . . G . GA . TG . TG . . G . T A . . . T . A T AGCGGGA CA G ACACGTGTA A GAGA . . C . G C . . . . . . C . . . GTAGATTGTTCGATT G . G . ATACGGAA A . A . TTTAACGAACAT . AG T GA C ACATACCTGAAGAAAGTTATATGTAAAAAAAAAAA . . A . AT G . . GA . . . A . G GTCC T C GGAAA G G T . . TAG A . CATCTAC C TCA . CTTT . . . GA . . . . . A CA . TT . . T . . TTT . . .
blockSeqs : . . CA . . . . . . . . . A . A . . A . . . . . . . . . . . . . . . . GTTCATT . . . . ATAATAAA A . A . GTTATGAACA . A C A G ACGTTTAATAAAATAGTTTACGTAA . . C . AA A . . A . . . . . . TC T T CGTA A G T . . T A . GGTGC G GC . CCC . . . . . . . . . . AA . TG . . T . . T . . .
blockSeqs : . GTGA . . G . . . G . G . AATGAATAAGGAGG . . . . . . . . . . . . . . . TT . . GAA . G A . . T . . GTAC A . . . . . . . . . . . . . AA . T . . A . . T . . .
blockSeqs : . . . . . . . . . . . G . C . . T . . T . . .
blockSeqs : . . . . . . . . A . C . . C . . T . . .
blockSeqs : . . . . . . . . . . C . . C . . T . . .
blockSeqs : . . C . . T . . .
blockSeqs : . . . T . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : A** ACGTTTAATAANAAGTTTACGTAGGG********************** GGAA****** G****** T**** CGTAC****** CC*********
originalCons : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAAC-AAAATTACCTGGAT-AGTTNACTGACAAA---ACT-CGGAAA--TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCNTAGGCTAATTA-GG-AT----TGTGTAA---AG--CGCCCCTCGT-GTATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATA-CCA-----GCCTGTCGT-G--ATCAAGCTAAA----C----GTG----ATTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTACAA-CT-ACGAACAAA---AAANTT-A---TG-AACA-ATATGA-----AAAGTG-G-AATGAATAATA----G-AGGATGG----ACG----TATA----TNAAA-ATAGTTATACGT-------AAGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTC-C--CTC----GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
finalCons : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAAC-AAAATTACCTGGAT-AGTTNACTGACAAA---ACT-CGGAAA--TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCNTAGGCTAATTA-GG-AT----TGTGTAA---AG--CGCCCCTCGT-GTATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATA-CCA-----GCCTGTCGT-G--ATCAAGCTAAA----C----GTG----ATTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTACAA-CT-ACGAACAAA---AAANTT-A---TG-AACA-ATATGA-----AAAGTGA--AATGAATAATA----G-AGGATGGACGTTTAATAANAAGTTTACGTAGGG----------------------AAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGAGGAA------CATGTAATG------TNTGACT-GAT--GACTT----TGAA-----ACA---CTTCGTAC------CCTGT----GATCAG-CCCCCTCCC---------GTTT-GTTT------TTTTAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATAGTTGTTTCTTGGCTGGCTCATCAGCAAAATACATAGTAATTTACTCACTATAACCAAATAAAGTCATGAACGAATACCGCAATAGATGACAAATGTGTAGCAGGAGAAATAGAACGACATAGGATGTCAAACTAAAATACTAACAGTAAAATATGGAACAGTGTTTACGGTAGTT
Alignments
lowQualScore : 222222 11 2222 1 1 33333333 1 1 11 222 333333 1 2222 11 1 1 1 66666666666666 4444444 222 3333333333333 1 1 11 22222 1 111 1 1 1 222 1 11 11 22 1 1 44444444444 2222222222 1 1 11 1 111 1 1 1 1111111 33333333 1 1 1 11 1 1 1 11 1111111111 333333333 2222 99999999999999999 1111 11 11 1 2 11 11 11 2222 1 1 2222 1 111 666666666666666666666666666666666666 1 333333333333333333 1111 111 111111111111111 22222 1 1111 99999999999999999999999999999999999999999999999 1111 111 2222 222222 2222 1 22222222222 11111 11 1111111111 2222222 11 11111 222222 111 22222222222 11111 444444444444 111111 1111 111 1 111 1111 11111111
lowQualScore : 999999 22 1 88 1 1 3333 1 5 5 66666666 5 1 5 1 88 000 7 888888 3 7 8888 99 2 0 3 2 33333333333333 3333333 333 7 9999999999999 1 5 5 88 77777 5 1 7 777 7 3 3 7 7 7 3 6 88 6 333 3 0 88 7 6 7 88 7 00 3 3 6 1 99999999999 5555555555 3 7 8888 2 88 0 3 222 6 7 6 3 7 3 2 6 9999999 3 88888888 0 22 0 0 2 33 2 3 0 0 0 1 33 3 3 9999999999 444444444 1111 11111111111111111 3 1111 33 33 2 0 0 2 33 33 33 1111 0 0 2 1111 0 777 000000000000000000000000000000000000 2 0 99 99 000000000000000000 1111 6 9 888 7 999999999999999 00000 8 8 3 8 0 7777 11111111111111111111111111111111111111111111111 7777 8 5 99 11 3 8 0 444 6666 0 333333 0 8 8 5555 8 6 99999999999 77777 11 5555555555 3 8888888 1 8 11 33333 000000 444 99999999999 88888 666 8 999999999999 6 999999 5 0000 555 5 66 5 66 5 0 0 000 5 3333 66 66 66 4 4 66666 555 3 22222222
lowQualScore : ...... .. . .. . . .... . . . ........ . . . . .. ... . ...... . . .... .. . . . . .............. ....... ... . ............. . . . .. ..... . . . ... . . . . . . . . .. . ... . . .. . . . .. . .. . . . . ........... .......... . . .... . .. . . ... . . . . . . . . ....... . ........ . .. . . . .. . . . . . . .. . . .......... ......... .... ................. . .... .. .. . . . . .. .. .. .... . . . .... . ... .................................... . . .. .. .................. .... . . ... . ............... ..... . . . . . .... ............................................... .... . . .. .. . . . ... .... . ...... . . . .... . . ........... ..... .. .......... . ....... . . .. ..... ...... ... ........... ..... ... . ............ . ...... . .... ... . .. . .. . . . ... . .... .. .. .. . . ..... ... . ........
lowQualScore : 000000 00 0 55 0 0 5555 0 5 5 00000000 0 0 5 0 00 555 3 333333 3 3 3333 33 0 7 3 0 33333333333333 3333333 333 3 0000000000000 0 5 0 00 00000 5 0 3 777 3 3 3 3 3 3 3 7 33 7 333 3 7 33 3 7 3 33 3 77 3 3 7 0 00000000000 3333333333 3 3 3333 0 33 7 3 333 7 3 7 3 3 3 0 7 0000000 7 55555555 0 22 0 0 5 88 5 5 0 0 0 0 88 2 2 3333333333 333333333 7777 77777777777777777 2 5555 88 88 5 0 0 5 88 88 88 2222 0 0 5 2222 0 555 888888888888888888888888888888888888 5 0 22 22 777777777777777777 5555 7 0 333 5 222222222222222 00000 0 0 8 0 0 0000 00000000000000000000000000000000000000000000000 0000 0 0 22 88 8 0 8 000 8888 8 000000 8 0 0 0000 0 0 22222222222 88888 22 2222222222 8 0000000 0 0 00 00000 888888 000 22222222222 44444 222 0 777777777777 7 222222 7 6666 666 0 99 0 99 0 0 1 111 0 6666 11 11 33 0 0 44444 888 3 11111111
consensus : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAAC-AAAATTACCTGGAT-AGTTNACTGACAAA---ACT-CGGAAA--TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCNTAGGCTAATTA-GG-AT----TGTGTAA---AG--CGCCCCTCGT-GTATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATA-CCA-----GCCTGTCGT-G--ATCAAGCTAAA----C----GTG----ATTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTAC-AA-CT-ACAAACAAA---AAANTT-A---T-G-AAC-A-ATATGA-----AAAGT-GA-AATGAATAATAG-AGGATG----GAC-----GT--T-TAAT-----AAAATAGTTATA-CGT-------A--GAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTCC--C--------GTTT-GTTT------TTT-TAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
Reference ( family-2807 ) : CAACGAGTACTCGATCACAACTATCGCTNNGTCGTANCGACCATCGACTTAANATTTTCNTTTGCANTCGTAGCACTCGTTAAAAATAGCCTTTTAAATAATGTTCAGTAGATTNTATAAGATGCTNCAGTATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTA----ATCATTTGAGTTGTGGATGTTGGTCAGTAAACATGCATCCGAAATTCACTGTATGGG-CACACTCTAAAAG---TCATGA-----AACCGATG-------AAAT---ATACATTATATATGAAT-GTGATACTG--TGAACTNTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACGGATCTCATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGGAGGGAACAACAAACACANATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATT-TCGAAAC-AAAATTACCTGGAT-AGTTNACTGACAAA---ACT-CGGAAA--TGAACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCNTAGGCTAATTA-GG-AT----TGTGTAA---AG--CGCCCCTCGT-GTATAACGTACACCTTCGAAGCTGTTAACTTTCA--TGAAAACGA-AAGACTGCACGAGCGCACTA-AAGAATTTTCTCAGA-AAAGAAAAAGCGTGCCCGTGT-AATTT-CACGGAAATAATGA-----TG-AAATAAG-ACGA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACNTCT--TATATTAGATATTGAGGTACTTTTCATGCCAAGCGC--AATA-CCA-----GCCTGTCGT-G--ATCAAGCTAAA----C----GTG----ATTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------GTA-CGGAA---TTAC-AA-CT-ACGAACAAA---AAANTT-A---T-G-AAC-A-ATATGA-----AAAGT-GA-AATGAATAATAG-AGGATG----GAC-----GT--T-TAAT-----AANA-AGTT-TA-CGT-------AGGGAAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAGGA--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAATG------TNTGACT-GAT--GACT--T--TGAA-----ACA---CTTCGT--AC----CCTGT----GATCAG-CCCCCTCC--C--------GTTT-GTTT------TTT-TAC----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-C--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTA
gi|1 : CAACGAGTACTCGATCACAACTATCGCTCGGTCGTACCGATCATCGACTTAAAATTTTCAT----ACTCGTAGTACTCGTTAAAAATAGCCTTTT--------TTCAGTAGATTATA-AAGATGTTACAATATTCGGTGCTTTTGTGAGTAAAATCA------GGTAAACTTAAA-TTAGTTGCAATTCGTTCATGTTCAGATTA----ATCATTAGAGTTA-GGATGTTGGTTAGTAAACATTCATCTGAAATTCACTGAATGGG-CACACT----AAG---T---AA-----AACCGATG-------AAAT---ATACATTATATATGAATTATGAAATTGCATGAACTCTCATATCTCTGAAATCCACTGTA-GGGCATACTTTAACG-ATCTTATGGTGGAGAAAACCGGTGAAATATACATTATATGAATTT-----ATCACTCTGCGGAGAGAACAACAAACACAAATTTTAAAAGCCAGTATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACGAACAGATTGTCAAAAC-AAA-TTACC-GGAT-A-TTTACTGACAAATATACTTCAGAAA--TGAACTGTCAACTAATTAGTT-ATTT--AATACATCGTAAATAATGAAATGATACATTGGAAAAGTCAATGA-TCCAG-TGGACCTTAGGCTAATTATGG-ATCTATTGTGTAA---AG--CGCCCCTCGT-GTATAACGCACACCTTCGAAGCTGTTAATTTTCA--TGAAAACAA-AA--CTGCACG-GCGCACTACAAGAATTTTCTCAGA-AAAGAAAAA-CGGCCCCGTATTAATTTTCACGGAAATAATGAATAGATA-AAATAAATATTA-AAATAAA-TAGAT--CGGAATGCATTT-CT-GT-ACTTCTATTAT-TTAGATATTGAGGTACTTTTCATGCTA-GCAC--AATA-CCA-----ACCTGTCGT-G--ATCAAGCTAA------------------TTATTTCAACCAGAGAACTT--TCAT--TACAAAAC-ATTA-TATGTCTCTGATTTAA--CTG--AACAAGAATTTCA----AA-CG-GCCATCCA----GAT-TGTA---ATT-------GTA-AT-TGT-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------ATA-CGGAA---TTAC-AA-CT-AC-AATAAA---AAAATT-A---TTG-AA--A-ATATGA-----AAAGT-GG-AATGAATAATAG-AG-ATG----GAC-----CT--A-TATC-----AAAATAGTTACA-CGT-------A---AAG----TATAT-AAACATGATTAGA--CGATAATTGTAT-TAGATTG---TAG-A--AGTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GG-AA---CATGTAAT-------TGTGACT-GAT--GACT--T--TGAA-----ACA---CTT--T--AC----CCTGT----GATCAG-CCCCCTCT--CTTT-----GTTT-GTTT------TTT-TAA----CGAG---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGC-C-T--C--GAG--TAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTGAAATTGACATCCCTA
gi|10 : AC----CGAG---T-A--CT-A--GATTAT-CGCC-CGAATCA-AGC-CTT--C--GAG--TAT-TC-G-GC--T--AGAG---T-AC--------CCGAGT-AAATTGACATACCTAc
gi|11 : a-TAA----CGAGGA-T-A--CT-C--GACTATACTAT-CG-CTG---GC-C-TG-C--GAG--TAT-TC-G-ACATC--AGGC---T-AT--------TAGAGTAAAATTGACATCCTTgat
gi|12 : A-----TG-AAATAAG-ATGA-AAATAAA-TA--------------TTT-CT-GC-ACGTCT--TATATTAGATATTGATGTACTTTTCATg
gi|13 : a--C--GAG--TAA-TC-G-AC--T--AGGC---T-ATAATAGTATCCGAGTAAAATTGAAATCCCTA
gi|14 : AT-TT-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATTCC
gi|15 : --AGGC---T-AT--------CCGAGTAAAACTGACATTCCTAaagttac
gi|16 : C--T--AAGC---T-CT--------CCGAGTAAAATTGACATCCCTAtttaaaa
gi|2 : TTGTGAGTAAAATCA------GGTAAATTTAAA-TTAGTTGTAATTCGTTCATGTTCAAATTATTAAATCATTTGAGTT-TGGATGTTGGT-AGTAAACATGCATCTGAAATTCACTGTATGGG-CACACTTTAAAAGATCTCATGATGGAAAACCGATG-------AAAT---ATACATTATATATGAA-----AT------TGAACTGTCATATCTCTGAAATCCACTGTATGGGCATACTTTAACAGATCTCATGATGGA--AAACCGGTGAAATATACATTATATGAATTTGAATTATCACTCTGCGAAGGGA-CAACAAACACATATTTTAAAAGCCAATATTAGTCAGAATCACCATTAAATTTTCTC-A-GAAACAAACAGATT-TCGAAACAAAAATTACCTGGATAAGTTA--TGA-AAA---ACT-CAGAAA--TAGACTGTCAACTAATTAGTTTATTT--AATACATCGTAA-TAATGAAATGATACATTAGAAAAGTCAATGAGTCCAGTTGGACCATAGGCTAATT-----AT----TGTGTAA---AG--CA-CCCTCGTGGTATAACGTACACCTTTGAAGCTGTTCTCTTTCA--TGAAAACAA-AAGACTGCACGAGCGCACTA-ACGAATTTTCTCAGACAAAGAAAAAACGTGCCCGTGT-AATTT-CACAGAAATAATGA--------AAATAAG-ATGA-AAATAAATTAGAT--CGGAATGCTTTC-TT-GT-ACTTCT--TGTATTAGATATTGAGGTACTTTTCATGCCAAACAC--AATACCCAGACCTGTCTGTCGT-G--ATCAAGCTAAAACACC----GTGTAATATTATTTCAACCATTGACTTT--TCAT--TACAAAACAATTA-TATGTCTCTGATTTAA--CTG--AACAA--ATTTCA----AA-CG-GCCATCCA----AATCTGTA---ATT-------GT-------T-C--ATT------------GGTGTCAGCCTT-ACGG--CTCGT--CAGCAAAATAC------ATA-CGGAA---TTAC-AA-CT-ACAAACAAA---TAATTTAA---C-G-AAC-ATATATGA-----AAAGTGGA-AATGAATAATAGAAGGATG----GAC-----GT--T-TAAT-----AAAATAGTT-TA-CGT-------A--AAAG----TATATAAAACATGATTAGA--CGATAATTGT-T-TAGATTG---TAG----AATAGAG------CTCAGATAA-ACAGTGC----TTTCAACCAG-TGAACT--T--C-----GCTATTCG----TATGCGC-CGA--GGAAA---CATGTAATG------TGTGACTCGAT--GACT--T--TGAA-----ACA---CTTC-C--ACCCGGCCTGT----CATCAGACCCCCTCCTTT--------GTTTGGTTT------TTT-TAC----CGAG---T-ACTCT-C--GACTAT-CGCTCCGACT-A-AGC-C-T--CCGGAGTCTAC-TC-G-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAta
gi|3 : AAAAACCAATATTATTCAGAATC--CATTAAATTTTCTCTACAAAACGAACAG-TT-TCGAAAC-AAAATT-CCTGGAT-AGTTGACTGACAAA---ACT-AGGAAGAGTGAGA-GTCAGTTAATTA--TTATTTCGAATAC-TCGTA--TAATGAAAGGATACATTGGAAAAGTCAATGA-TCCAG-TG---CCTAGGCTAATTA-GGGAG----TGAGTGAGAGAGGCCATCCCTCGA-GT-----GTATAC-----AAGCTGTTAA-TTTCAATTGAAGAAGAGAAGA--G---GAGCG----A-GAGAGTGT---------GAGAGAGAGTGTGA--GTGT-GA--------GAGAGAGTGA-----TGGAAATAAG-ACAATAAATCAA-TAGATTTCGTAATGCATTTTCTCGTGACATGC--TATATTAGATATTGAGGTACTTT--GTG---AGCGGGAAATA-C-A-----GCCTGTCGTCGTCATCAAGCTAAA----CACGTGTA----AATATTTCA-CCAGA---CTT--TCAT--TA---AAC-ATTACTATGT-TCTATTTTAA--CTG--AACAA--ATTTCA----AAACGAG------A----GAT-TGTA---ATT-------GTAGAT-TGT-TCGATT------------GGT-TCAGCCTT-ACG----TCGT--CAGCCCAATAC------GTG-----A---TT-C-AA--T-ACAAACAGA---AGA----------------------GA-----GAATT-GA-AAC-AATAA-AA-AG--TG----GAA---------T-GAAT-----AAGG-AG-------------------GAAC----TATAT-CAA--------------AT--TTGTAT-TAGAT-G---TAGGA--AGTAGAG------CTCAGATAATCCAGC-CA---TTTC-ACCAGCTGAACG--T--T-----G-TAGCTG-----ATGCGC--GA--G--AA---C-TGTAATG------TTTGA-T-GAT--GACTGGT--TGAA------CA---CTTGGT--GC-------GT----GAGC-G-CTCCCT---------------TT-GTTT------TTT-TAC----TGGA---T-A--CT-C--GACTAT-CGCT-CGACTAA-AGCGT-C--C--GA---TA--TC-G-AC--T--AAGC---T-CT--------CCGATAAAAATTGACATCCCTAa
gi|4 : TCAACAAGGAGACTTATTCAGAATACAAAAC-ATTAGTTTGTCTCTGATTTAAAGCTGGAAACGA--AGTTGATAAAAA-CG-GCCATCCATGAAGAT-TGTACACATTACAGTGTGTA-ATGTGTTC--ACTCTCGGTACCCCCAGTGTTAGCGTTGACGGTGCTCGTACCAGCAAAATACTGGAGTGCAGCGAAACTGTTAC-C--CTGACAAACCAA---AAATTT-AGACT-GCAAC-A-GTATGATATCGGATGT-GAGAATGAAATATGT-CGGGCGTAGTGACACGCGGT--TATAGTCTTCGAACA-TGTT-TAACGT-------AGGGAAGAGTTTGGAT-AATAATGATTAGCTTCGATATGTGTGTATAGATTGAGATAGGAGAAGT-GAGGTGTCCCGCAG-TGA-AGCGC-CCCCATTTC-ACCAGGTGAACTGTC--C-----GCTCTGCGGTGATAGTCGCGCGAAGGG-AAGACCGTGTAGTCCATCCCTTTGGCT-GACTCGACT--TAGTGAATCAGGACAACCCTTCATCTAC----CCTGTCTCAAATCAG-GCCCCTCC--TCCTCTGTAGTGT-GTTTGAGAACTTC-TACTCTTCG-G---TGA--CTTC--GACTA--CGCTACGACTAACAGC-C-CTCC--GAG--TACCTCTGTAC--TTTAAGCGTTTGAT--------TCGAGTAAAATTGACATCCCTa
gi|5 : CAATGAGTACTC------AACTATCGCTATGTCATAACGACCATCGACT--ACATTTTTTTTTGCAATCA-AGCACTCATTAAAAA-AGCTTTTTAAATAATGTTCA-TAGATTCTATAAAATGCTTCAGTAT--AGT---TTTGTAAGTAAA-TCATGTTAGGGTAAATTCAAAACGAATTTTAATTTGTTCATGCTCAA-TCA----ATCATTTGAGTTGTGGATGTTGGTCTGTAAACATGATTCCAAAATCCACTGTTTGGATCATACTCTAAAAG---TCAT-------ATCCAATGACGGAAAAAATTAAATACATT-TACATGTAT-GTGATACTG--ta
gi|6 : tATGATTAGA--CGATAATTGTAT-TAAATTG---TAG-A--ACTAGAG------CTCAGATAA-ACAGC-C----TTTC-ACCAG-TGAACT--TAGCTATAAGCTATTCT----TATGCGC-TAA--CG-TA---CATGTAATG------TATGACT-GAT--GACT--T--TGAA-----ACA---TTT-GT--AC----CCTGT----AA---G-TTCTCGCC--C-----------C-ATTT------TTCATAC----CGAG---T-A--CT-C--GACTAT-CGC------------C-C-C--C--GAG--TAC-TC-A-AC--T--AAGC---T-AT--------CCGAGTAAAATTGACATCCCTAaac
gi|7 : GG--CTCAT--CAGCAAAATAC------ATA--GTAAT--TTACTCA-CT-ATAACCAAAT--AAAGTC-A---T-G-AACGA-ATAg
gi|8 : atagttgtttcttggct--CTCAT--CAGCAAGATAC------ATA-ATAAA---TTAC-AATCT-ATGAACAATTTTAAAGTT-A---T-G-AAC-A-ATATGA-----AAAGC-GG-AGTGAATATCAG-AGGATA----GAC-----ATACC-TGA------AGAA-AGTTATA-TGTAAAAAAAAAAAAAG----TATAT-AAACATGATTAGA--CCATccgcaatagatgacaaatgtgtagcaggagaaatagaacgacataggatgtcaaactaaaatactaacagtaaaatatggaacagtgtttacggtagtt
gi|9 : C--C--------ATTT-GTTT------GAT-CAC----AGAAGTTT-A--CT-CCCGACTAT-CGCT-CGACTAA-AGC-C-C--T--GAG--TAC-TC-G-AC-----AAGC---T-AT--------CCGA-TGAAA-TGATATCCCTAttt