lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3 111 1 1 7777777777777777777777777777777777777777777777777777 333333333333333333333333333333333 222 66666666666666666666 22222 2 3333 222 44 444444444 88888888888888 22222222 1 2222222 3 777777777 1111 4444444444 222 111 1 66666 333333 1111111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 55555555555555555555555555555555
lowQualScore : 3 333 5 0 0 0000000000000000000000000000000000000000000000000000 9 3 3 3 44 3 3 2 999999999999999999999999999999999 2 0 6666 000 3 3 4 66666666666666666666 6 2 5 0 44444 0 7777 888 99 6 6 111111111 00000000000000 44444444 77 2 5 5 7777777 5 5 5 1 1 777777777 0 4 6666 4444444444 1 444 4 4 4 55 2 3 3 3 111 55 4 66 4 4 0 4 4 22222 4 4 999999 2222222 4 4 4 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 0 55 00000000000000000000000000000000 66 4
lowQualScore : . ... . . . .................................................... . . . . .. . . . ................................. . . .... ... . . . .................... . . . . ..... . .... ... .. . . ......... .............. ........ .. . . . ....... . . . . . ......... . . .... .......... . ... . . . .. . . . . ... .. . .. . . . . . ..... . . ...... ....... . . . .............................................................................................................................................. . . .. ................................ .. .
lowQualScore : 8 888 0 8 0 5555555555555555555555555555555555555555555555555555 4 1 1 1 22 1 1 9 666666666666666666666666666666666 7 7 5555 000 6 6 4 44444444444444444444 7 8 7 2 33333 0 7777 888 33 7 0 000000000 33333333333333 77777777 44 0 7 7 1111111 7 7 7 8 4 777777777 9 4 8888 7777777777 9 111 4 4 4 55 6 6 6 6 444 00 2 11 4 4 9 4 4 33333 4 4 444444 0000000 4 4 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9 4 55 66666666666666666666666666666666 11 0
consensus : GGACA-GA---AAGTCA-CAGGACAAAAAG-TCA---AG--GGAC---A-TACT---A-GT-CA-CAA---AAT-CGA-TAGG---ACAAA-AA-AGTCAC-AG--G-AC-AAAAA-GTC-------ACAAT--GACA--AA-----A---TA-GGACAAAAAGTCAC----AGGACANAAAGGTCACA-AGACA-A---A-AAGAT--ACAGGA--CAAAAAANCA-CAGGACA---TAAAGTCACAAAATTAATAAAA-TGAAAGTC-ACAGGGCA-TCTG-ATTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTAGTGCTC-TA-ATCATCAAATTATTTCTCATC---AAAATTTAGAAA--G-TTAGATA-AAAAATAA-ATTC-TCATAAAAAG-TATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATGAA-----AATA-TATTT-T--GAAATTC-TATAT-A-CATTTATTTT--AA-AAAATC-A-AT--ATTTT-C-A-T---A--TAAACT--G-T-GACTTTTT-GTCCTG-TG--ACCTTTTTGTCC-TGT-G-CATT-TT-T-----TGT-C-CT-GTGA----------CTTTTTGTCC-------TG---GTGACT-TTCTTGC----TCCTT--CTNT-NTGG--ATTGT-GACT-TT-TTG--T-CCACGGTC-----GTCT-ATNGTCC-GTATGATNCTGT--TTCGT-TC----CTG-TGACTTT--TTGTCCTG-----T-GA-----T-GACT-TT---T---CCTGTG--ACTTTCTGTCCCACGTT
Reference ( gi|2 ) : GGACACGA---AAGTCA-CAGGACACAAAA-TCA---AG--AGAC---A-TACT---A-GT-CA-AAT---AATCCGA-TAGG--CACAAA-AA-AGTCAC-AG--G-AC-AAAAA-GT--------ATAAT--GACA--AA-----A---TA-GGACAAAAAGTCAC----AGGAAACAAAGGTCACA-AGACA-A---ACGAGA---ACACGG--CAAAGAAGCA-CAGGA-A---TAAAGTCACAAAATT-ATAAAACTGTAAGTC-CAAGGGCAGGCTG-ATTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTAGTGTTCGTA-ATCATCAAAT-ATTTCTCATTCAAAAAATTTAGAAA--G-T-AGATA-AAAAATAA-ATTC-TCATAATAGA-TATAAAC-CC-TACTCA-TATTCTTATAACTTAACAAAA-GAA-GA--AATA-TATTT-C--GAAATTC-TATAT-A-TATTTATTTT-TAA-AAAATC-A-AT--ATTTT-C-A-T---A--TAAACT--G-T-GACATTTT-GTCCTG-TGAAACATTTTTGTCC-TGT-GTCATC-TT-T-----TGT-C-TT-GTGT----------TTTGTTGTCC-------TGA--GTGACTATTCTTGC----TCCTT--CTTT-CTGG--ATTGTGGACTGTTATTG--T-CCATCGTCA---TATCTGATAGTCC-GTATGAGACTGT--TTCAT-TT----CTGATGACTTT--TTGTCCCG-----T-GA-----T-GACT-TT---C---CCTGTG--ACTTTCTGTCCCACATT
gi|3 : GGACA-GA---AAGCCA-CAGGACAAAAAG-GCA---CG---GAC---A-T--T---A-AT-CA-CAA---AAT-CGA-TAGG---AC-AA-AA-AGTCAC-AG--G-AC-AAAAA-GTC-------ACAAT--GACC--AC-----A---TN-NNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN-NNNNN-N---NNNNNN---NNNNNN--NNNNNNNNNN-NNNNN-N---NNNNNNNNNAAATTA-ATAGAA-TGAAAGTC-ACAGGGCA-TCTG-ATTTTAT
gi|9 : aacGGACA--AT--AAGTCA-CAG---ACAAAA-T----------GACCATG-TACGAAAA-GT-CACAAT---CATAAAG-TAGG---GC-AA-AA-AGTCAC-AG--G-A--AAAAT-GTC-------ACAA---GACA--AAAAGACA---CA-GGACAAAATGTCAC----AGtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttagtacttatcatcaaattattttcatcaaactatagaaagttagacaaaaataaattctcataaaatgtataaaccctctcatattctttaacttaacaaaatgaatatattttgaaattcatataacatttatttaaaaaatcaatattttcatataa
gi|12 : catcaaattaacaaaatgaatgtattttgaaattcatattacatttatttaagaaaatcaataatttcgtataaaGGACA-GA---AA-TCA-CAGGACAACAAG-TCACC-AG---GAC---A-TA-----A-AG-CA-CAA---AATC--G-TAAG--GACAAA-AAGAG--AC-AG--T-AC-AAA---GTC-------AAAAT--GACC--AC-----A---TA-GGATAAAA-GTATC----AGGC--CA--GGT-ACA-AGACA-A---A-AAGATC-ACAGGA--CAAAAAATCAGCAGGACA---TAAAGTCAGCAAATT-ATAAA--TGAAAGTC-ACAGGGCAATCTG-ATTTTtgttactttctgacccacattcgtttgttattgt
gi|8 : cGGACA-GA---AAGTCA-CAGGACAAAAAA-TCA---CA--GGAC---A----T---A-GT-CA-CAA---AAT-CGA-TAGG---AC-AA-AA-AGACAC-AG--G-AC-AAAAA-GTC-------ACACT--GAC
gi|13 : tgcattttttgctcaattgaggtgataccattcattggtaaacGGACA-GA---AAGTCA-CAGGACAAAAAAGTCC---AGCTGGAC---ATTA-----A-GTACA-AAA---AATC--A-TAGG---ACAAA-AA-GTTCAC-AG--G-ACAAAAAA-GTC-------ACAAT--GACC--AA-----catatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|17 : aacGGACA-GA---AAGTCA-CAGGAAATAAAG-TCA---CA--ACAT---ATTACT---A-GT-CA-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcgatagaatgaaagtcacag
gi|20 : tacattttttactcgtttacaggcgggtctaggaggttaatttttggggaacGGACA-GA---AAGTCA-CAGGACAAAAAG-TCA---Acaa
gi|1 : tttgtcacaattacgtttgtcctactatttgaACACGGCAGGAGTCAACAGGACAAAAAAGTCACACAG--GAAC---ACTA-T---A-GT-CA-CAA---AAT--GAATAGGACCCCAAA-GA----CAC-AGTGG-AC-AAAAG-TC--------ACAAT--GACC--AAC----A---TATGGACGAAAAGTC-C----AACGGACAAAGGTCACATAGACA-A---A-AAAA---ACACAGGCCAAAAAAGCA-CACGG-ACACTAAAGTCACAAAATT-ATAAAA-TG-AAGTCACAGCAGCA-TCTGCACTTTCTATca
gi|18 : tacctataataggtaG--GGGC---A-TACA---AAGT-CACAATGGCAAC---A-TAGG---ACAAA-A--AGTCAC-AG--G-AC-AAAAA-G------------GT--CACA--A--------------GACAGAAAGTCAC----AGGAtttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagtttagtcattatagatcatcaattcatttcatcaaaaatttagagaatgtagccatgaaaataacattctcataaaaaagtatcaacaccatactcagtattctttacctaaccaaatattgaattactattttcagacatttgcatataacaattatttcaaaaaatcagattaattatacactaattaaactgttgacttttttcctatgtgacattattgtcctgtgacgttttagtctttgtgaacttttgtcctatgcttttgtcctttactttactgaatgtgatttctttgattccatggtcatctattgtccagtgacttttcggttctgtggacttatctatgtctgtggaacttttgatcccacattc
gi|9 : cgCAA-TAAGT-CACAGACAA-AATGACCAT--GTAC-GAAAA-GTC-------ACAAT--CATA--AA-----G---TA-GGGCAAAAAGTCAC----AGGAA--AAATGTCACA-AGACA-A---A-AAGAC--ACAGGA--CAAAATGTCA-CAG
gi|8 : catcaaattaacaaaatgaatgtattttgaaattcatattacatttatttaagaaaatcaataatttcgtataaaAG-AA-AGTCAC-AG--G-AC-AAAAA-ATCACAGGACATAGT--CACA--AAATCG-A---TA-GGACAAAAAGACAC----AGGACA-AAAAGTCACA-tcctgttactttctgacccacattcgtttgttattgt
gi|13 : tgcattttttgctcaattgaggtgataccattcattggtaaacggacAG-AA-AGTCAC-AG--G-AC-AAAAAAGT--------CCAGCTGGACATTAA-----G---TA----CAAAAAATCAT----AGGACAAAAAGTTCACA-GGACA-A---Actgaccatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|16 : aacggacAG-AA-AGTCAC-AG--G-AC-AAAAT-G---------ACCATG-GACA--AA-----AAAGTA-GGACAAAATGTCACAATTAGGACAAAACAGTTACA-AGACA-A---aaagtcacaatgaccaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcgatagaatgaaagtcacag
gi|20 : AG-AA-AGTCAC-AG--G-AC-AAAAA-GT---------CAAT--CAAA--TA-----G---TA-GGACAAAgtcccaccttcatctgtatatttt
gi|22 : tttgtcacaattacg-AA-AGTCAC-AG--G-AC-AAAAA-G-------------T--CACA--AAATCG-A---TA-GGACAAAAgtccca
gi|18 : acggacatAAA-GTC-------ACAAT--GGCA--AC-----A---TA-GGACAAAAAGTCAC----AGGACAAAAAGGTCACA-AGACA-G---A
gi|15 : cgggggcatacT--GACC--AC-----A---TA-GGACAAAAGGTCAC----AAG--ACAAAAGACGCA-GGACA-A---A---------------------AAGCA-CAGGACA---TAAAGTTACAAAATTAATAAAA-TGAAACTC-ACAGGGCA-TCTG-ATTTTATaagtcacagga
gi|8 : -GGACAGAAAGTCAC----AGGACA-AAAAATCACA-GGACATAGTCACAAAATCGATAGGA--CAAAAAGACA-CAGGACA---AAAAGTCACA
gi|17 : tgcattttttgctcaattgaggtgataccattcattggtaaac-GGACAGAAAGTCAC----AGGAAATAAA-GTCACA-Actgaccatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|21 : tacattttttactcgtttacaggcgggtctaggaggttaatttttggggaacCA-CAG-A-A---TATAGTCACAAAATTAATAGAA-TGAAAGTC-ATAGGGTA-TCTG-ATTTTATcatattactagtcacaa
gi|7 : AAATTGATAAAA-TGAAAGTC-ACAGGGCAT-CTG-ATTTTATt
gi|5 : AAGTTAAGT--TCTTA-ATCATCAAATTATTT-TCATC---AAAATTTAGAAA--G-TTAGATT-AAAAATAA-ATTC-TCAT-ATAAAGTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG-------AATA-TATTT-T--GAAAATT-CATATAA-CATTTATTTTAAAA-AAAATCAA-AT--A-TTT-C-A-T---A--TAAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttggttctaatcatcaaatgatttttatcaaaatttagaaagttagataaaaataatttcttcatataagtataaacctactcgtattctttactt
gi|1 : aaattaataaaatgaaagtcacagggcatcttgattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAGTTTAGTCATTATAGATCATCAATTCATTTC--ATC--AAAAATTTAGAGAATG-T-AGCCATGAAAATAACATTC-TCATAAAAAAGTATCAACACCATACTCAGTATTCTT-TA-CCTAACCAAA-TATTGA--ATTACTATTT-TCAGACATTTGCATAT-AACAATTATTTC--AA-AAAATC-AGATTAATTATAC-ACT---AATTAAACT--G-TTGAC-TTTT-TTCCTA-TGTGACATTATTGTCC-TGT-GACGT--TT-T-----AGT-CTTT-GTGA----------ACTTTTGTCC-------TA--------TGCTTTTG-----TCCTTTACTTTACTGA--A-TGT-GATTTCT-TTGATT-CCATGGTC-----ATCT-ATTGTCCAGT----GACT-T--TTCGG-TT----CTGTGGAC-----TTATCT----------A-----T-G-------------TCTGTGGAACTTTTGATCCCACATT
gi|4 : tacctataataggtaacacggcaggagtcaacaggacaaaaaagtcacacaggaacactatagtcacaaaatgaataggaccccaaagacacagtggacaaaagtcacaatgaccaacatatggacgaaaagtccaacggacaaaggtcacatagacaaaaaaaacacaggccaaaaaagcacacggacactaaagtcacaaaattataaaatgaagtcacagcagcatctgcactttctattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAGTTTATTGCT---A-ATCATCGAATTATTT-TCATC---AAAATTTAGA-----------TA-AAA-ATAA-ATTC-TCATAGAAAG-TATAAAC-CT-TACTTA-TATTATTA-AACTTGAC-AAT-GAA-TACTCGTA-TATTT-T--AAAATTCATTTA--A-AATTTA--TT-TAA-AAAATC-A-AT--ATTTC-C-A-T---A--TAAc
gi|7 : tcacaaaatcgatagaataaaagttacaggacatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttAAGTT--G-GTTC-TA-ATCATCAAAT-GATTTTTATC---AAAATTTAGAAA--GTT-AGAT--AAAAATAA-TTTCTTCAT-ATAAG-TATAAA--CC-TACTCG-TATTCTT
gi|3 : aaattgataaaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTTAGTACTT----ATCATCAAATTATTT-TCATC---AAACTATAGAAA--G-TTAGACA-AAAA-TAA-ATTC-TCATAAAATG-TATAAAC-CC-T-CTCA-TATTCTT-TAACTTAACAAAATG-------AATA-TATTT-T--GAAATTCATATA--A-CATTTA--TT-TAA-AAAATC-A-AT--ATTTT-C-A-T---A--TAAtactt
gi|6 : aacggacagaaagccacaggacaaaaaggcacggacattaatcacaaaatcgataggacaaaaagtcacaggacaaaaagtcacaatgaccacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattaatagaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCAAATTATTTCATAT-----AAATTTAGAG---G-T-AGATA-AAAA-TAA-ATTC-TCATAA-AAC-TGTAAAC-CC-TACTCA-TATTCTT-TAACTTATCAAAATGAA--------A-TATTT-C--GAAATTC--ATAT-AACATTTATTTT--AA-AAAATC-A-AT--ATTTT-CAA-T---A--TAAA
gi|14 : aattaataaaatgaaaatacaagggtatctgattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagTAGAAA--A-TTAAATA-AGAA-TAA-TTTC-TCATAGAATG-TATAAAC-CT-TACTCA-TATTCTT-TAACTTAACAAAATG-------AATA-TATTT-T--AAA--------------ATTTATTCT---A-AAAATC-A-AT--ATTTT-G-A-T---A--TAAA
gi|9 : AAATTAACAAAATGAA-------TG-TATTT-T--GAAATTC--ATATTA-CATTTATTT---AAGAAAATC-A-AT--AATTT-C-G-T---A--TAAACT--G-T-GACATTTT-GTCCTG-TG---TCTTTTTGTCT-TGT-GACATT-TT---------T-C-CT-GTGA----------CTTTTTGCCCTACTTTATGATTGTGACTTTTCGTACATGGTCATT--TTGT-CTG----T----GAC--TTATTG--T-CC
gi|11 : catc--AATG-TATTT----GAAATTC--ATAT-A-CATTTATTTA-AGA-AAAAT--A-AT--AATTT-C-G-T---A--TAAA-T--G-T-GACA-TTT-GTCCTG-TT---CCTTTATG--C-TGT-GTGA-C-AT-T-----TCT-C-CT-GT-----------------------------------TGAC---TTTTGC-----CCTA--CTTT-AT-G--ATTGTGGAC-GTT-TCG--TAACATGGTCATTTTGTCTG-TGATC---TATTGTTCTGT--TAC-T-TT----CTGACCACATTCGTTGTTATGT----T-GA-----T-GACC-TT---tgttactttctgacccacattcgtttgttattgt
gi|19 : atg--AATA-TATTTTC--GAAATTCATATA--A-CATTTATTTT-AAA-AAAATC-A-AT--ATTTT-C-A-T---A--TAA
gi|12 : acaaaatg--ACTTT-C-A-TTT-A--TAATTT--GCT-GACTTTAT-GTCCTGCTGA---TTTTTTGTCC-TGT-G--ATCTTT-T-----TGT-C-TT-GTAC--------------CTGGCC-------TGA-------TACTTTTA--------TC--CTAT-GTGGTCATT-TTGACT----TTG--T---ACTGTC------TCTTTTTGTCC-TTACGATTTTGTGCTTTATGTC----CTGGTGACTTG--TTGTCCTG-----T-GA-----T-TTCT-GT---C---C
gi|15 : cTTT-C-A-TTTTA--TTAATTTTG-T-AACTTTAT-GTCCTG-TG---C-TTTTTGTCC-TGC-GTC----TT-T-----TGT-C-TT-GTGA----------CCTTTTGTCC-------TAT--GTGcacagggcaatctgatttt
gi|16 : tgacAATT--G-T-GACATTTT-GTCCT------ACTTTTTTGTCCATG--GTCA---TT-T-----TGT-C-CT-GTGA----------CTTTCTGTCC-------ctcacagggcatctgattttat
gi|13 : ttgtcttgtaactgttttgtcctATT--G-T-GACTTTTTTGTCCTG-TG-AAC-TTTTTGTCC-TAT-G--ATT-TT-T-----TGTAC-TTAATGTCCAGCTGGACTTTTTTGTCC-------T----GTGACT-TTCTcaccttcatctgtatatttt
gi|18 : aacggacCT--G-T-GACTTTCT-GTCTTG-TG--ACCTTTTTGTCC-TGT-G--ACT-TT-T-----TGT-C-CT-ATGT----------Tgaccaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcgatagaatgaaagtcacag
gi|8 : cgggggcatacaaagtcacaatggcT--G-T-GACTTTTT-GTCCTG-TG---TCTTTTTGTCC-TATCG--ATT-TTGTGACTATGT-C-CT-GTGA----------TTTTTTGTCC-------T----GTGACT-TTCTga
gi|8 : tgcattttttgctcaattgaggtgataccattcattggtaaacggacATGGTCA-GTGTGA--CTTT--TTG---TC----CTG-TGTCTTT--TTGTCCTA-----TCGATTTTGT-GACTATG---T---CCTGTG--ATTTTTTGTCCctgaccatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|9 : tgcattttttgctcaattgaggtgataccattcattggtaaacggacagaaagtcacaTTC-GTATAA-ACTGT--GACAT-TTTGTCCTG-TGTCTTT--TTGTCTTG-----T-GA-----C--ATT-TT---T---CCTGTG--ACTTTTTGCCCTACTTTatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|8 : catcaaattaacaaaatgaatgtattttgaaattcatattacatttatttaagaaaatcaataat-TT----TTG-TGACTAT----GTCCTG-----T-GA-----T-TTTT-TG---T---CCTGTG--ACTTTCTGTCCatgattgtgacttttcgtacatggtcattttgtctgtgacttattgtcctgttactttctgacccacattcgtttgttattgt
gi|18 : tgcattttttgctcaattgaggtgataccattcattggtaaac-TC----CTG-TGACTTT--CTGTCTTG-----T-GA-----C---CT-TT---TTGTCCTGTG--ACTTTTTGTCCTATGTTtcgataggacaaaaagacacaggacaaaaagtcacactgaccatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|16 : cgggggcatacaaagtcacaatggcTTT--TTGTCC-A-----T-GG-----T-CATT-TTG--T---CCTGTG--ACTTTCTGTCCCACCTT
gi|10 : ttgtcttgtaactgttttgtcctaattgtgacattttgtcctactTT--TTGTCCT---------A-----T-GACT-TT---CG--TCTGTG--ACTTTCTGTCCCACATTcatctgtatatttt
gi|20 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctactttctgttgtgttttttgtccatggtcaT--TTGTCCTACTATTT-GA-----TTGACT-TT---TTGTCCTGTG--ACTTTCTGTCCCAcgctagatgtttatatga
gi|17 : tttgtcacaattacg-----T-GACT-TTATTT---CCTGTG--ACTTTCTGTCC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): ACCCTTGATTAAAAGGTAAACGGACAGAAAGTCACAGGAC
Unaligned ( gi|24 ): AAACCCACATATTTAAATATGCATACAAGTTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444444444444444 11 1111111 1 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222 11 1111 333333333333 33333333 1 1 11 222 55555555555555 666666666666666666666666666666 2 11111 11111 4444444444444444444444444 1 111 2222222222 11 11
lowQualScore : 4 4 4 4 3333333333333333333 5 5 4 00 3 66 5 3 4 4 0000000 55 4 1 9999 66 1 4 4 5 2 333 5 77 5 5 1 5 0 4 3 3 3 4 4 4 4 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 6 55555 3 99 3333 5 55 55 9 5 5 77 5 5 5 4 777777777777 4 99 00000000 4 0 99 4 4 55 4 4 4 4 55 2 0 6 2 33 999 2 3 3 22222222222222 11 2 444444444444444444444444444444 0 22222 77777 6 1111111111111111111111111 5 5 5 666 1111111111 3 22 3 44 6
lowQualScore : . . . . ................... . . . .. . .. . . . . ....... .. . . .... .. . . . . . ... . .. . . . . . . . . . . . . . ............................................................................................................................. . . ..... . .. .... . .. .. . . . .. . . . . ............ . .. ........ . . .. . . .. . . . . .. . . . . .. ... . . . .............. .. . .............................. . ..... ..... . ......................... . . . ... .......... . .. . .. .
lowQualScore : 0 0 0 4 7777777777777777777 0 0 4 11 6 99 0 9 4 4 0000000 22 6 6 4444 11 2 4 4 0 9 666 0 44 0 0 0 0 8 0 6 6 6 0 0 0 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 7 00000 6 44 0000 1 11 44 4 0 0 44 0 0 0 4 222222222222 0 55 00000000 0 8 55 0 0 55 0 0 0 0 55 5 0 2 5 88 222 5 2 2 00000000000000 55 5 555555555555555555555555555555 0 00000 22222 0 2222222222222222222222222 0 6 0 888 0000000000 2 55 2 33 0
consensus : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTCA---C-G--GGACA-TA-T-AGT-CACAAAATC-GATAGG-ACAAAAA-AGTCACA--GGAC-AAAAAGTCACAAT-GA-CAACA---TA-GGACAAAAAGTCAC----A--GGACA-AAAGGTCACA-AGAC-AAA-AAGAC-ACA-GGACAAAAAAGCA-CA-GGACA-TAAAGTCACAAAATTAATAAAA-TGAAAGTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--GAAATTC--ATA-TAA-CATTTATTTT--AAAAAA-TCA-AT--AT-TTT-C-A-TA--TAAACTGT-GACATTTTGTCCT--GTG--ACNTTTTTGTCCTGTG-CATTTTT-GTC-TTGTGACTTTTTGTCCTG-NTGACT-TT-TTGCTCCTT--CTTTAC-GATTGTGGACT-T-T-TCG--T-NCATGGTCAT---ATCT-ATNGTCCGTATGA--CTGTTTCGTTCCTG-T-GACT---T---T--TTGTCCTG-TGATGACTTTC-CCTGTGACTTTCTGTCCCACATT
Reference ( family-2715 ) : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTCA---A-G--GGACA-TACT-AGT-CACAAAATC-GATAGG-ACAAAAA-AGTCACA--GGAC-AAAAAGTCACAAT-GA-CAAAA---TA-GGACAAAAAGTCAC----A--GGACANAAAGGTCACA-AGAC-AAA-AAGAT-ACA-GGACAAAAAANCA-CA-GGACA-TAAAGTCACAAAATTAATAAAA-TGAAAGTCAC-AG-GGC-AT-C-TG-ATTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAA-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--GAAATTC-TATA-T-A-CATTTATTTT--AAAAAA-TCA-AT--AT-TTT-C-A-TA--TAAACTGT-GACTTTTTGTCCT--GTG--ACCTTTTTGTCCTGTG-CATTTTTTGTC-CTGTGACTTTTTGTCCTG-GTGACT-TTCTTGCTCCTT--CTNTNTGGATTGT-GACT-T-T-TTG--T-CCACGGTC-----GTCT-ATNGTCCGTATGATNCTGTTTCGTTCCTG-T-GACT---T---T--TTGTCCTG-TGATGACTTTT-CCTGTGACTTTCTGTCCCACGTT
gi|1 : GGCA-GGA-GTCAACAGGAC-AAAAAAGTCACACA-G--GAACACTA-T-AGT-CACAAAATG-AATAGG-ACCCCAA-AGACACAGTGGAC--AAAAGTCACAAT-GACCAACA---TATGGACGAAAAGTC-C----AACGGAC--AAAGGTCACATAGACAAAA-AAAAC-ACA-GGCCAAAAAAGCA-CACGGACACTAAAGTCACAAAATT-ATAAAA-TG-AAGTCAC-AGCAGC-AT-C-TGCACTTTCTAT
gi|1 : tacctataataggtaacacAAGTTTAGTCATTA-TAGATCATCAATTCATTTCATCA-----AAAATTTAGAGAATGTAGCCATGAAAATAACATTC-TCATAAAAAAGTATCAACACCATACTCAGTATTCTT-TA-CCTAACCAAATATTGA--AT----TACTATTTTCAGACATTTGCATA-T-AACAATTATTTC--AAAAAA-TCAGATTAAT-TATAC-ACTAATTAAACTGTTGACTTTTT-TCCTATGTG--ACATTATTGTCCTGTG-ACGTTTTAGTCTTTGTGAACTTTTGTCCT--ATG-CT-T--TTG-TCCTTTACTTTACTGAATGT-GATT-TCT-TTGATT-CCATGGTC-----ATCT-ATTGTCCA-GTGA--CT-TTTCGGTTCTG-TGGACT---TATCT--ATGT-CTG-TGG-AACTTTT-tttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagtttagtcattatagatcatcaattcatttcatcaaaaatttagagaatgtagccatgaaaataacattctcataaaaaagtatcaacaccatactcagtattctttacctaaccaaatattgaattactattttcagacatttgcatataacaattatttcaaaaaatcagattaattatacactaattaaactgttgacttttttcctatgtgacattattgtcctgtgacgttttagtctttgtgaacttttgtcctatgcttttgtcctttactttactgaatgtgatttctttgattccatggtcatctattgtccagtgacttttcggttctgtggacttatctatgtctgtggaacttttgatcccacattc
gi|10 : tacctataataggtaacacggcaggagtcaacaggacaaaaaagtcacacaggaacactatagtcacaaaatgaataggaccccaaagacacagtggacaaaagtcacaatgaccaacatatggacgaaaagtccaacggacaaaggtcacatagacaaaaaaaacacaggccaaaaaagcacacggacactaaagtcacaaaattataaaatgaagtcacagcagcatctgcactttctattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnat---TG-GGACAGAAAGTCAC----A--G---ACGAAAGTCATA-GGAC-AAA-ATGAC--CATGGACAAAAAA-CA-CA---ACA-GAAAGTgatcccacattc
gi|10 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctTTTTGTCCATG---GTCA---T---T--TTGTCCT----ATGACTTTCGTCTGTGACTTTCTGTCCCACATTcattcgctagatgtttatatga
gi|11 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctactttctgttgtgtt--AA----TG-TATTT---GAAATTC--ATA-T-A-CATTTATTTA--AGAAAA-ATA-AT--AA-TTT-C-G-TA--TAAA-TGT-GAC-ATTTGTCCT--GTT---CCTTTATG--CTG----------------TGTGACATTTC-TCCTG-TTGACT-T--TTGC-CCTA--CTTTAT-GATTGTGGACG-T-T-TCG--TAACATGGTCATTTTGTCT-GTGATC--TATTGTTCTGTTACTTTC----T-GACCACAT---TCGTTGTTATGTTGATGACCTTcgctagatgtttatatga
gi|12 : atgGGACA-GAAA-TCA-CAGGAC-AACAA-GTCA---CCA--GGACA-TA---AAG-CACAAAATC-GTAAGG-ACAAAAAGAG--ACA--GTAC-AAA--GTCAAAAT-GA-CCACA---TA-GGATAAAA-GTATC----A--GGCCA----GGT-ACA-AGAC-AAA-AAGATCACA-GGACAAAAAATCAGCA-GGACA-TAAAGTCAGCAAATT-AT-AAA-TGAAAGTCAC-AG-GGCAAT-C-TG-ATTTT
gi|13 : cGGACA-GAAAGTCA-CAGGACAAAAAA-GTCC---A-GCTGGACA-T--TAAGTACAAAAAATC--ATAGG-ACAAAAA-GTTCACA--GGACAAAAAAGTCACAAT-GA-C-------------CAA----TNNN----N--NNNNNNNNNNNNNNNN-NNNN-NNN-NNNNN-NNN-NNNNNNNNNNNNN-NN-NNNNN-NNNNNNNA-AAA-TCGATAGAA-TGAAAGTCAC-AG-
gi|14 : aacTAGAAAAT-TAAATA-AGAA-TAA-TTTC-TCATAGAAT-GTATAAAC-CT-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--AAA---------------ATTTATTCT---AAAAA-TCA-AT--AT-TTT-G-A-TA--TAAA
gi|15 : CAT----A--GGACA-AAAGGTCACA-AGAC-AAA-A-GAC-GCA-GGACAAAAA-GCA-CA-GGACA-TAAAGTTACAAAATTAATAAAA-TGAAACTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|16 : tgacca-GGTGGG-ACAGAAA--GTCACA--GGAC-AAAA--TGACCATGGA-CAAAAAAGTA-GGACAAAATGTCACAATTA--GGACAAAACAGTTACA-AGAC-AA
gi|17 : GGACA-GAAAGTCA-CAGGAA-ATAAA-GTCA---C-A--ACATATTACT-AGT-CACAAttcatctgtatatttt
gi|18 : tacattttttactcgtttacaggcgggtctaggaggttaatttttggggaacAAAGTCACAAT-GG-CAACA---TA-GGACAAAAAGTCAC----A--GGACAAAAAGGTCACA-AGAC-AGA-AAGTC-ACA-GGA
gi|19 : cgggggcatacACAAAATG--AA--------TA-TATTTTC-GAAATTCATATA---A-CATTTATTTT--AAAAAAATCA-AT--AT-TTT-C-A-TA--TAA
gi|2 : GGACACGAAAGTCA-CAGGAC-ACAAA-ATCA---A-G--AGACA-TACT-AGT-CAAATAATCCGATAGGCACAAAAA-AGTCACA--GGAC-AAAAAGT-ATAAT-GA-CAAAA---TA-GGACAAAAAGTCAC----A--GGAAACAAAGGTCACA-AGAC-AAACGAGA--ACA-CGGCAAAGAAGCA-CA-GGA-A-TAAAGTCACAAAATTA-TAAAACTGTAAGTCCA-AG-GGC-AGGC-TG-ATTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTAGT-GTTCGTA-ATCATCAAAT-ATTTC-TCATTCAAAAAATTTAGAAAGT--AGATA-AAAAATAA-ATTC-TCATAATAG-ATATAAAC-CC-TACTCA-TATTCTTATAACTTAACAAAA-G--AAGAAA----TA-TATTTC--GAAATTC-TATA-T-A-TATTTATTTTT-AAAAAA-TCA-AT--AT-TTT-C-A-TA--TAAACTGT-GACATTTTGTCCT--GTGAAACATTTTTGTCCTGTGTCATCTTTTGTC-TTGTGTTTTGTTGTCCTGAGTGACTATTCTTGCTCCTT--CTTTCTGGATTGTGGACTGT-TATTG--T-CCATCGTCAT---ATCTGATAGTCCGTATGAGACTGTTTCATTTCTGAT-GACT---T---T--TTGTCCCG-TGATGACTTTC-CCTGTGACTTTCTGTCCCACATT
gi|20 : TGGG-ACAGAAA--GTCACA--GGAC-AAAAAGT--CAAT-CA-AATAG---TA-GGACAAA
gi|20 : tttgtcacaattacgGGACA-GAAAGTCA-CAGGAC-AAAAA-GTCA---A-
gi|21 : tttgtcacaattacgtttgtcctactatttgaCA-CA-GAATA-TA--GTCACAAAATTAATAGAA-TGAAAGTCAT-AG-GGT-AT-C-TG-ATTTTATca
gi|22 : GGACA-TAAAGTCA-CAGGAC-AAAAA-GTC-------------------------ACAAAATC-GATAGG-ACAAAAt
gi|23 : acGGACA-GAAAGTCA-CAGGAC-
gi|3 : acccttgattaaaaggtaaacGGACA-GAAAGCCA-CAGGAC-AAAAA-GGCA---C-G--G-ACA-T--T-AAT-CACAAAATC-GATAGG-ACAAAA--AGTCACA--GGAC-AAAAAGTCACAAT-GA-CCACA---T---NNNNNNNNNNNNN----N--NNNNNNNNNNNNNNNN-NNNN-NNN-NNNNN-NNN-NNNNNNNNNNNNN-NN-NNNNN-NNNNNNNNNNAAATTAATAGAA-TGAAAGTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|3 : aacGTTTAGT-ACTT----ATCATCAAATTATTT--TCATC---AAACTATAGAAAGT-TAGACA-AAAA-TAA-ATTC-TCATAAAAT-GTATAAAC-CC-T-CTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--GAAATTC--ATA-TAA-CATTTA-TTT--AAAAAA-TCA-AT--AT-TTT-C-A-TA--TAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttagtacttatcatcaaattattttcatcaaactatagaaagttagacaaaaataaattctcataaaatgtataaaccctctcatattctttaacttaacaaaatgaatatattttgaaattcatataacatttatttaaaaaatcaatattttcatataa
gi|4 : aacggacagaaagccacaggacaaaaaggcacggacattaatcacaaaatcgataggacaaaaagtcacaggacaaaaagtcacaatgaccacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattaatagaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCACAAAATCGATAGAA-TAAAAGTTAC-AG-GAC-AT-C-TG-A-TTT-TATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTATT-GCT---A-ATCATCGAATTATTT--TCATC---AAAATTTAGA---------TA-AAA-ATAA-ATTC-TCATAGAAA-GTATAAAC-CT-TACTTA-TATTATT-AAACTTGAC--AATG--AA--TACTCGTA-TATTTT--AAAATTC--ATT-TAA-AATTTA-TTT--AAAAAA-TCA-AT--AT-TTC-C-A-TA--TAA
gi|5 : AAATTAATAAAA-TGAAAGTCAC-AG-GGC-AT-CTTG-ATTTTA
gi|5 : AAGTTAAGT-TCT--TA-ATCATCAAATTATTT--TCATC---AAAATTTAGAAAGT-TAGATT-AAAAATAA-ATTC-TCATATAAA-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--GAAAATT-CATA-TAA-CATTTATTTTAAAAAAAA-TCA-A---ATATTT-C-A-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttaagttcttaatcatcaaattattttcatcaaaatttagaaagttagattaaaaataaattctcatataaagtataaaccctactcatattctttaacttaacaaaatgaatatattttgaaaattcatataacatttattttaaaaaaaatcaaatatttcatataaa
gi|6 : aaattaataaaatgaaagtcacagggcatcttgattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTAATAAAA-TGAAAAT-ACAAG-GGT-AT-C-TG-ATTTTAT
gi|6 : ATCAAATTATTTC-ATAT-----AAATTTAGA--GG-TAGATA-AAAA-TAA-ATTC-TCATAAAAC--TGTAAAC-CC-TACTCA-TATTCTT-TAACTTATCAAAATG--AA---------A-TATTTC--GAAATTC--ATA-TAA-CATTTATTTT--AAAAAA-TCA-AT--AT-TTT-CAA-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatcaaattatttcatataaatttagaggtagataaaaataaattctcataaaactgtaaaccctactcatattctttaacttatcaaaatgaaatatttcgaaattcatataacatttattttaaaaaatcaatattttcaatataaa
gi|7 : aattaataaaatgaaaatacaagggtatctgattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagAAATTGATAAAA-TGAAAGTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|7 : AAGTT--G--GTTC-TA-ATCATCAAATGATTTT-T-ATC---AAAATTTAGAAAGT-TAGAT--AAAAATAA-TTTCTTCAT-ATAA-GTATAAA--CC-TACTCG-TATTCTT-T-ACTTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttggttctaatcatcaaatgatttttatcaaaatttagaaagttagataaaaataatttcttcatataagtataaacctactcgtattctttactt
gi|8 : aaattgataaaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACA-GAAAGTCA-CAGGAC-AAAAA-ATCA---C-A--GGACA----T-AGT-CACAAAATC-GATAGG-AC-AAAA-AGACACA--GGAC-AAAAAGTCACACT-GA-C
gi|9 : tgcattttttgctcaattgaggtgataccattcattggtaaacT-CAAATTAACAAAATG--AA--------TG-TATTTT--GAAATTC--ATATT-A-CATTTATTTA--AGAAAA-TCA-AT--AA-TTT-C-G-TA--TAAACTGT-GACATTTTGTCCT--GTG---TCTTTTTGTCTTGTGACATTTT---TC-CTGTGACTTTTTGCCCT-----ACT-TTAT-----------------GATTGT-GACT-T-T-TCG--T-ACATGGTC-----ATT---TTGTCTG--TGA--CT-TATTG-TCCTG-T-TACT---T---T--CTGACCcatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAACCCACATATTTAAATATGCATACAAGTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 22222222 11111111111 111 11111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222 11 1111 11 333333333333 11 222 11111 33333 1 222 11 11 111 2222 1 1 11111 33333333 33333 1 1 111 22222222222222 11
lowQualScore : 4 4 3 0 4 55 4 3333 44444444 4 66 66 4 5 3 66 5 4 55 33333333333 4 55 777 44 4 4 222 4 66 00000 4 4 4 8888 0 2 3 3 3 3 3 3 4 4 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 8 3 6 55555 3 99 3333 5 55 55 9 5 5 1 00 5 5 5 4 444444444444 4 99 4 55 4 3 0 33 4 55 4 4 4 4 55 2 8 88 0 555 77777 3 22 0 66666 1 88 7 1 3 333 3 33 3 88 777 5555 2 0 0 55555 77777777 1 99999 0 9 22 5 6 666 0 6 00000000000000 88
lowQualScore : . . . . . .. . .... ........ . .. .. . . . .. . . .. ........... . .. ... .. . . ... . .. ..... . . . .... . . . . . . . . . . ............................................................................................................................ . . . ..... . .. .... . .. .. . . . . .. . . . . ............ . .. . .. . . . .. . .. . . . . .. . . .. . ... ..... . .. . ..... . .. . . . ... . .. . .. ... .... . . . ..... ........ . ..... . . .. . . ... . . .............. ..
lowQualScore : 4 4 6 1 0 55 0 2222 77777777 4 99 44 4 0 6 99 0 0 55 55555555555 4 55 444 88 4 4 777 4 11 55555 4 4 4 5555 8 9 3 3 3 3 6 6 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 5 7 00000 6 44 0000 1 11 44 4 0 0 2 99 0 0 0 4 000000000000 0 55 0 55 0 2 8 55 0 55 0 0 0 0 55 5 0 88 8 000 44444 8 00 8 44444 0 66 4 0 2 222 2 88 2 00 888 0000 5 0 0 88888 88888888 0 22222 0 0 22 6 4 888 8 2 77777777777777 33
consensus : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-C---GGGACA-TA----TAGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGAC-ATTTTGTCC---TGTG--ACNTTTTTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCCTN--CTTTACT-GATTGTGGACT-TT-TCG--T-NCATGGTCATATCT-ATTGTCCG-GT--GA-CTGTTTCGTTCCTG-T-GACTTTTTGNCCTGTGATGACTTTC-TCTGTG--ACTTTCTGTCCCACATT
Reference ( family-2715 ) : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-C---GGGACA-TA----TAGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGAC-ATTTTGTCC---TGTG--ACNTTTTTGTCCTGTG-CAT-TTTTGTC-TTGTGACTTTTTGTCCTG-NTGAC--TTTTTGCTCCTT--CTTTAC--GATTGTGGACT-TT-TCG--T-NCATGGTCATATCT-ATNGTCCGTAT--GA-CTGTTTCGTTCCTG-T-GACTTTTTGTCCTGTGATGACTTTC-CCTGTG--ACTTTCTGTCCCACATT
gi|1 : TG-TGACTATAGTGTTCCTGTGTG--ACTTTTTTGTCCTGTT-GAC-TCCTGCC-GTGTTACCTATTAT
gi|1 : tacctGGCA-GGA-GTCAACAGGAC-AAAAAAGTC--A-CACAGGAACACTA----TAGT-CACAAAAT--G-AATAGG-ACCCCAA-AGACACAGTGGAC-AAAA-GTCA-CAA--TGACCAAC--A-TATGGACGAAA-AGTCCAAC-GGAC-A-AA-GGTCACATAGACAAA-AAAAACACA-GG--CCAAAAAAG--CA-CACGGACACTAAAGT----CACAAAATT-ATAAAA-TG-AA-GTCAC-AGCAGC-AT-C-TGCACTTTCTATTaaatgaataggaccccaaagacacagtggacaaaagtcacaatgaccaacatatggacgaaaagtccaacggacaaaggtcacatagacaaaaaaaacacaggccaaaaaagcacacggacactaaagtcacaaaattataaaatgaagtcacagcagcatctgcactttctattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagtttagtcattatagatcatcaattcatttcatcaaaaatttagagaatgtagccatgaaaataacattctcataaaaaagtatcaacaccatactcagtattctttacctaaccaaatattgaattactattttcagacatttgcatataacaattatttcaaaaaatcagattaattatacactaattaaactgttgacttttttcctatgtgacattattgtcctgtgacgttttagtctttgtgaacttttgtcctatgcttttgtcctttactttactgaatgtgatttctttgattccatggtcatctattgtccagtgacttttcggttctgtggacttatctatgtctgtggaacttttgatcccacattc
gi|1 : tacctataataggtaacacT-AAGTTTAGTCATTA-TAGATCATCAATTCATTTCATCA-----AAAATTTAGAGAATGTAGCCATGAAAATAACATTC-TCATAAAAAAGTATCAACACCATACTCAGTATTCTT-TA-CCTAACCAAATATTGA--AT----TACTATTTTCAG-ACATTTGC-ATATAACAATTATTTC--AAAAAATCAGATTAAT-TATAC-ACTAATTAAACTGTTGAC--TTTTTTCCTA-TGTG--ACATTATTGTCCTGTGACGT-TTTAGTCTTTGTGAACTTTTGTCCT--ATG----CTTTTG-TCCTTTACTTTACT-GAATGTGATTT-CT-TTGATT-CCATGGTC--ATCT-ATTGTCCA-GT--GA-CT-TTTCGGTTCTG-TGGACTTAT----CTATG----------TCTGTGGAACTTTTGATCCCACATTttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagtttagtcattatagatcatcaattcatttcatcaaaaatttagagaatgtagccatgaaaataacattctcataaaaaagtatcaacaccatactcagtattctttacctaaccaaatattgaattactattttcagacatttgcatataacaattatttcaaaaaatcagattaattatacactaattaaactgttgacttttttcctatgtgacattattgtcctgtgacgttttagtctttgtgaacttttgtcctatgcttttgtcctttactttactgaatgtgatttctttgattccatggtcatctattgtccagtgacttttcggttctgtggacttatctatgtctgtggaacttttgatcccacattc
gi|10 : tacctataataggtaacacggcaggagtcaacaggacaaaaaagtcacacaggaacactatagtcacaaaatgaataggaccccaaagacacagtggacaaaagtcacaatgaccaacatatggacgaaaagtccaacggacaaaggtcacatagacaaaaaaaacacaggccaaaaaagcacacggacactaaagtcacaaaattataaaatgaagtcacagcagcatctgcactttctattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna-AAT--G-TG-GGACAGAA-AGTC--ACAG-AC-G-AAAG-TCATA-GGACAAA-ATGA-C-CATGG--ACAAAAAA---CA-CA---ACA-GAAAGT----c
gi|10 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctTTTTGTCCATG---GTCATTTTGTCCT---ATGACTTTCGTCTGTG--ACTTTCTGTCCCACATTcgctagatgtttatatga
gi|11 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctactttctgttgtgtt--AA----TG-TATTT---G-AAATT--C-ATATA-CATTTATTTA--AGAAAAATA-AT--AA-T-TTC-G-TA--TAAA-TG-TGAC-ATTT-GTCC---TGTT---CCTTTATG--CTGTG----------------TGACATTTC-TCCTG-TTGAC--TTTT-GC-CCTA--CTTTAT--GATTGTGGACG-TT-TCG--TAACATGGTCAT-T----TTGTCTG--T--GATCTATT--GTT-CTG-T-TACTTTCTGACCcgctagatgtttatatga
gi|11 : atgAAGGTCATCAACATAAC-AACGAA-TGTGGTCAGAA-AGTA--ACAGAAC-A-ATAGATCACA--GACAAA-ATGA-C-CA-TGTTACGAAAC-GTCCA-CA-AT-CA-TAAAGTAGGGCA-AAAGTCAACAGGA--GAAATGTCAC-AC-AGC-AT-acattcgttgttatgttgatgacctt
gi|12 : atgaatgtatttgaaattcatatacatttatttaagaaaaataataatttcgtataaatgtgacatttgtcctgttcctttGGACA-GAAA-TCA-CAGGAC-AACAA-GTC--ACC---AGGACA-TA----AAG--CACAAAAT--C-GTAAGG-ACAAAAAGAG--ACAG--TAC---AAAGTCA-AAA--TGAC-CAC--A-TA-GGAT-AAA-AGTA--TCAGGCC-----AGGT-ACA-AGACAAA-AAGATCACA-GG--ACAAAAAAT--CAGCA-GGACA-TAAAGT----CAGCAAATT-AT-AAA-TGAAA-GTCAC-AG-GGCAAT-C-TG-ATTTT
gi|13 : cGGACA-GAAAGTCA-CAGGACAAAAAA-GTCCAG-C---TGGACA-TT----AAGTACAAAAAAT--C--ATAGG-ACAAAAA-GTTCACAG--GACAAAAAAGTCA-CAA--TGAC--------------CAA------T--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNAAAATCGATAGAA-TGAAA-GTCAC-AG-
gi|14 : aacTAGAAAAT-TAAATA-AGAA-TAA-TTTC-TCATAGAAT-GTATAAAC-CT-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--A-AA--------------ATTTATTCT---AAAAATCA-AT--AT-T-TTG-A-TA--TAAA
gi|15 : C--ATAGGAC-A-AAAGGTCACA-AGACAAA-A-GA-CGCA-GG--ACAAAA-AG--CA-CA-GGACA-TAAAGT----TACAAAATTAATAAAA-TGAAA-CTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|16 : tgaccaGGAC-AGAAA-GTC--A-C---AGGACA----------------AAATGAC-CAT-GG-ACAAAAA-AGT---AG--GAC-AAAATGTCA-CAA--T-----------TA-GGACAAAACAGTT--ACAAGAC-A-A
gi|17 : GGACA-GAAAGTCA-CAGGAA-ATAAA-GTC--A-C-----AACA-TATTACTAGT-CACAAcaccttcatctgtatatttt
gi|18 : tacattttttactcgtttacaggcgggtctaggaggttaatttttggggaacAAAGTCA-CAA--TGGC-AAC--A-TA-GGACAAAA-AGTC--ACAGGACAA-AAAGGTCACA-AGACAGA-AAGT-CACA-GG--A
gi|19 : cgggggcatacACAAAATG--AA--------TA-TATTTTC-G-AAATT--C-ATATAACATTTATTTTA-AAAAAATCA-AT--AT-T-TTC-A-TA--TAA
gi|2 : GGACACGAAAGTCA-CAGGAC-ACAAA-ATC--A-A---GAGACA-TAC---TAGT-CAAATAAT--CCGATAGGCACAAAAA-AGTCACAG--GAC-AAAAAGT-A-TAA--TGAC-AAA--A-TA-GGACAAAA-AGTC--ACAGGAA-ACAAAGGTCACA-AGACAAACGAGA--ACA-CG--GCAAAGAAG--CA-CA-GGA-A-TAAAGT----CACAAAATTA-TAAAACTGTAA-GTCCA-AG-GGC-AGGC-TG-ATTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTAGT-GTTCGTA-ATCATCAAAT-ATTTC-TCATTCAAAAAATTTAGAAAGT--AGATA-AAAAATAA-ATTC-TCATAATAG-ATATAAAC-CC-TACTCA-TATTCTTATAACTTAACAAAA-G--AAGAAA----TA-TATTTC--G-AAATT--CTATATA-TATTTATTTTT-AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGAC-ATTTTGTCC---TGTGAAACATTTTTGTCCTGTGTCATCTTTTGTC-TTGTGTTTTGTTGTCCTGAGTGACTATTCTTGCTCCTT--CTTT-CTGGATTGTGGACTGTTATTG--T-CCATCGTCATATCTGATAGTCCGTATGAGA-CTGTTTCATTTCTGAT-GACTTTTTGTCCCGTGATGACTTTC-CCTGTG--ACTTTCTGTCCCACATT
gi|20 : TGGG-ACAGAAA--GTCACAG--GAC-AAAAAGT---CAA--TCA--AAT--AGTA-GGACAAA
gi|20 : tttgtcacaattacgGGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-
gi|21 : tttgtcacaattacgtttgtcctactatttgat--CA-CA-GAATA-TA--GT----CACAAAATTAATAGAA-TGAAA-GTCAT-AG-GGT-AT-C-TG-ATTTTATca
gi|22 : GGAC-ATAAA-GTC--A-C---AGGACA-AA----AAGT-CACAAAAT--C-GATAGG-ACAAAAt
gi|23 : acGGACA-GAAAGTCA-CAGGAC-
gi|3 : acccttgattaaaaggtaaacGGACA-GAAAGCCA-CAGGAC-AAAAA-GGC--A-C---GG-ACA-T-----TAAT-CACAAAAT--C-GATAGG-ACAAAA--AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-CAC--A-T--NNNNNNNN-NNNN--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNNAAATTAATAGAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|3 : aacGTTTAGT-ACTT----ATCATCAAATTATTT--TCATC---AAACTATAGAAAGT-TAGACA-AAAA-TAA-ATTC-TCATAAAAT-GTATAAAC-CC-T-CTCA-TATTCTT-TAACTTAACAAAATG--AA--------TA-TATTTT--G-AAATT--C-ATATAACATTTA-TTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttagtacttatcatcaaattattttcatcaaactatagaaagttagacaaaaataaattctcataaaatgtataaaccctctcatattctttaacttaacaaaatgaatatattttgaaattcatataacatttatttaaaaaatcaatattttcatataa
gi|4 : aacggacagaaagccacaggacaaaaaggcacggacattaatcacaaaatcgataggacaaaaagtcacaggacaaaaagtcacaatgaccacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattaatagaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT----CACAAAATCGATAGAA-TAAAA-GTTAC-AG-GAC-AT-C-TG-ATTTTAT--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTATT-GCT---A-ATCATCGAATTATTT--TCATC---AAAATTTAGA---------TA-AAA-ATAA-ATTC-TCATAGAAA-GTATAAAC-CT-TACTTA-TATTATT-AAACTTGAC--AATG--AA--TACTCGTA-TATTTT--A-AAATT--C-ATTTAAAATTTA-TTT--AAAAAATCA-AT--AT-T-TCC-A-TA--TAA
gi|5 : AAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-CTTG-ATTTTA
gi|5 : -AAGTTAAGT-TCT--TA-ATCATCAAATTATTT--TCATC---AAAATTTAGAAAGT-TAGATT-AAAAATAA-ATTC-TCATATAAA-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--GAAAATT--C-ATATAACATTTATTTTAAAAAAAATCA-A---ATAT-TTC-A-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttaagttcttaatcatcaaattattttcatcaaaatttagaaagttagattaaaaataaattctcatataaagtataaaccctactcatattctttaacttaacaaaatgaatatattttgaaaattcatataacatttattttaaaaaaaatcaaatatttcatataaa
gi|6 : aaattaataaaatgaaagtcacagggcatcttgattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTAATAAAA-TGAAA-AT-ACAAG-GGT-AT-C-TG-ATTTTAT
gi|6 : ATCAAATTATTTC-ATAT-----AAATTTAGA--GG-TAGATA-AAAA-TAA-ATTC-TCATAAAAC--TGTAAAC-CC-TACTCA-TATTCTT-TAACTTATCAAAATG--AA--A--------TATTTC--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTCAA-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatcaaattatttcatataaatttagaggtagataaaaataaattctcataaaactgtaaaccctactcatattctttaacttatcaaaatgaaatatttcgaaattcatataacatttattttaaaaaatcaatattttcaatataaa
gi|7 : aattaataaaatgaaaatacaagggtatctgattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagAAATTGATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|7 : -AAGTT--G--GTTC-TA-ATCATCAAATGATTTT-T-ATC---AAAATTTAGAAAGT-TAGAT--AAAAATAA-TTTCTTCATATAA--GTATAAA--CC-TACTCG-TATTCTT-T-ACTTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttggttctaatcatcaaatgatttttatcaaaatttagaaagttagataaaaataatttcttcatataagtataaacctactcgtattctttactt
gi|8 : aaattgataaaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACA-GAAAGTCA-CAGGAC-AAAAA-ATC--A-C---AGGAC---A----TAGT-CACAAAAT--C-GATAGG-AC-AAAA-AGACACAG--GAC-AAAAAGTCA-CAC--TGAC---C--A-TA-
gi|9 : tgcattttttgctcaattgaggtgataccattcattggtaaacT-CAAATTAACAAAATG--AA--------TG-TATTTT--G-AAATT--C-ATATTACATTTATTTA--AGAAAATCA-AT--AA-T-TTC-G-TA--TAAACTG-TGAC-ATTTTGTCC---TG-----------TGTC--------T-TTTTGTC-TTGTGACATTTT-TCCTG--TGAC--TTTTTGC-CCTA--CTTTAT--GATTGT-GACT-TT-TCG--T-ACATGGTCAT-T----TTGTCTG--T--GA-CT-TATTG-TCCTG-T-TACTTTCTGACCtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAACCCACATATTTAAATATGCATACAAGTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 22222222 11111111111 111 11111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222 11 1111 11 333333333333 11 1 11 33333333333 44444 1 1 222 11 11 11 1111 1 1 11111 33333333 3333 1 1 111 1111 333333333 22
lowQualScore : 4 4 3 0 4 55 4 3333 44444444 4 66 66 4 5 3 66 5 4 55 33333333333 4 55 777 44 4 4 222 4 66 00000 4 4 4 8888 0 2 3 3 3 3 3 3 4 4 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 8 3 6 55555 3 99 3333 5 55 55 9 5 5 1 00 5 5 5 4 444444444444 4 99 4 55 4 3 0 33 4 55 4 4 4 4 55 2 0 3 3 33 00000000000 3 2 22222 3 0 11 5 333 3 33 3 88 33 1 9999 2 0 0 55555 77777777 6666 0 9 33 000 3333 77 1 888888888 77 3
lowQualScore : . . . . . .. . .... ........ . .. .. . . . .. . . .. ........... . .. ... .. . . ... . .. ..... . . . .... . . . . . . . . . . ............................................................................................................................ . . . ..... . .. .... . .. .. . . . . .. . . . . ............ . .. . .. . . . .. . .. . . . . .. . . . . .. ........... . . ..... . . .. . ... . .. . .. .. . .... . . . ..... ........ .... . . .. ... .... .. . ......... .. .
lowQualScore : 4 4 6 1 0 55 0 2222 77777777 4 99 44 4 0 6 99 0 0 55 55555555555 4 55 444 88 4 4 777 4 11 55555 4 4 4 5555 8 9 3 3 3 3 6 6 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 5 7 00000 6 44 0000 1 11 44 4 0 0 2 99 0 0 0 4 000000000000 0 55 0 55 0 2 8 55 0 55 0 0 0 0 55 5 0 2 2 88 55555555555 2 5 22222 5 0 22 0 222 2 88 2 00 88 0 2222 5 0 0 88888 88888888 5555 0 0 55 888 5555 88 0 000000000 55 0
consensus : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-C---GGGACA-TA----TAGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACATTTTTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TACTTTACT-GATTGTGGACT-TT-TCG--T-NCATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTCGTTTCTG-T-NACTTTCTGACCCGTGATGACTTTCCCTGTGGAACTTTCGGTCCCACATT
Reference ( family-2715 ) : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-C---GGGACA-TA----TAGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACNTTTTTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TNCTTTACT-GATTGTGGACT-TT-TCG--T-NCATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTCGTTCCTG-T-GACTTTTTGNCCTGTGATGACTTTCTCTGTG--ACTTTCTGTCCCACATT
gi|1 : GGCA-GGA-GTCAACAGGAC-AAAAAAGTC--A-CACAGGAACACTA----TAGT-CACAAAAT--G-AATAGG-ACCCCAA-AGACACAGTGGAC-AAAA-GTCA-CAA--TGACCAAC--A-TATGGACGAAA-AGTCCAAC-GGAC-A-AA-GGTCACATAGACAAA-AAAAACACA-GG--CCAAAAAAG--CA-CACGGACACTAAAGT----CACAAAATT-ATAAAA-TG-AA-GTCAC-AGCAGC-AT-C-TGCACTTTCTATT
gi|1 : tacctataataggtaacacT-AAGTTTAGTCATTA-TAGATCATCAATTCATTTCATCA-----AAAATTTAGAGAATGTAGCCATGAAAATAACATTC-TCATAAAAAAGTATCAACACCATACTCAGTATTCTT-TA-CCTAACCAAATATTGA--AT----TACTATTTTCAG-ACATTTGC-ATATAACAATTATTTC--AAAAAATCAGATTAAT-TATAC-ACTAATTAAACTGTTGAC-TTTTTTCCTATGTG--ACATTATTGTCCTGTGACGT-TTTAGTCTTTGTGAACTTTTGTCCT--ATG----CTTTTG-TCCTTTACTTTACT-GAATGTGATTT-CT-TTGATT-CCATGGTC--ATCT-ATTGTCCA---GTGA-CT-TTTCGGTTCTG-TGGACTT----ATCTATG---------TCTGTGGAACTTTTGATCCCACATTttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagtttagtcattatagatcatcaattcatttcatcaaaaatttagagaatgtagccatgaaaataacattctcataaaaaagtatcaacaccatactcagtattctttacctaaccaaatattgaattactattttcagacatttgcatataacaattatttcaaaaaatcagattaattatacactaattaaactgttgacttttttcctatgtgacattattgtcctgtgacgttttagtctttgtgaacttttgtcctatgcttttgtcctttactttactgaatgtgatttctttgattccatggtcatctattgtccagtgacttttcggttctgtggacttatctatgtctgtggaacttttgatcccacattc
gi|10 : tacctataataggtaacacggcaggagtcaacaggacaaaaaagtcacacaggaacactatagtcacaaaatgaataggaccccaaagacacagtggacaaaagtcacaatgaccaacatatggacgaaaagtccaacggacaaaggtcacatagacaaaaaaaacacaggccaaaaaagcacacggacactaaagtcacaaaattataaaatgaagtcacagcagcatctgcactttctattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna-AAT--G-TG-GGACAGAA-AGTC--ACAG-AC-G-AAAG-TCATA-GGACAAA-ATGA-C-CATGG--ACAAAAAA---CA-CA---ACA-GAAAGT----c
gi|11 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcct--AA----TG-TATTT---G-AAATT--C-ATATA-CATTTATTTA--AGAAAAATA-AT--AA-T-TTC-G-TA--TAAA-TG-TGACATTT-GTCC--TGTT---CCTTTATG--CTGTG----------------TGACATTTC-TCCTG-TTGAC--TTTT-GC-CC--TACTTTA-T-GATTGTGGACG-TT-TCG--TAACATGGTCAT-T----TTGTCT----GTGATCTATT--GTT-CTG-T-TACTTTCTGACCcgctagatgtttatatga
gi|11 : atgAAGGTCATCAACATAAC-AACGAA-TGTGGTCAGAA-AGTA--ACAGAAC-A-ATAGATCACA--GACAAA-ATGA-C-CA-TGTTACGAAAC-GTCCA-CA-AT-CA-TAAAGTAGGGCA-AAAGTCAACAGGA--GAAATGTCAC-AC-AGC-AT-acattcgttgttatgttgatgacctt
gi|12 : atgaatgtatttgaaattcatatacatttatttaagaaaaataataatttcgtataaatgtgacatttgtcctgttcctttGGACA-GAAA-TCA-CAGGAC-AACAA-GTC--ACC---AGGACA-TA----AAG--CACAAAAT--C-GTAAGG-ACAAAAAGAG--ACAG--TAC---AAAGTCA-AAA--TGAC-CAC--A-TA-GGAT-AAA-AGTA--TCAGGCC-----AGGT-ACA-AGACAAA-AAGATCACA-GG--ACAAAAAAT--CAGCA-GGACA-TAAAGT----CAGCAAATT-AT-AAA-TGAAA-GTCAC-AG-GGCAAT-C-TG-ATTTT
gi|13 : cGGACA-GAAAGTCA-CAGGACAAAAAA-GTCCAG-C---TGGACA-TT----AAGTACAAAAAAT--C--ATAGG-ACAAAAA-GTTCACAG--GACAAAAAAGTCA-CAA--TGAC--------------CAA------T--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNAAAATCGATAGAA-TGAAA-GTCAC-AG-
gi|14 : aacTAGAAAAT-TAAATA-AGAA-TAA-TTTC-TCATAGAAT-GTATAAAC-CT-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--A-AA--------------ATTTATTCT---AAAAATCA-AT--AT-T-TTG-A-TA--TAAA
gi|15 : C--ATAGGAC-A-AAAGGTCACA-AGACAAA-A-GA-CGCA-GG--ACAAAA-AG--CA-CA-GGACA-TAAAGT----TACAAAATTAATAAAA-TGAAA-CTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|16 : tgaccaGGAC-AGAAA-GTC--A-C---AGGACA----------------AAATGAC-CAT-GG-ACAAAAA-AGT---AG--GAC-AAAATGTCA-CAA--T-----------TA-GGACAAAACAGTT--ACAAGAC-A-A
gi|17 : GGACA-GAAAGTCA-CAGGAA-ATAAA-GTC--A-C-----AACA-TATTACTAGT-CACAAcaccttcatctgtatatttt
gi|18 : tacattttttactcgtttacaggcgggtctaggaggttaatttttggggaacAAAGTCA-CAA--TGGC-AAC--A-TA-GGACAAAA-AGTC--ACAGGACAA-AAAGGTCACA-AGACAGA-AAGT-CACA-GG--A
gi|19 : cgggggcatacACAAAATG--AA--------TA-TATTTTC-G-AAATT--C-ATATAACATTTATTTTA-AAAAAATCA-AT--AT-T-TTC-A-TA--TAA
gi|2 : GGACACGAAAGTCA-CAGGAC-ACAAA-ATC--A-A---GAGACA-TAC---TAGT-CAAATAAT--CCGATAGGCACAAAAA-AGTCACAG--GAC-AAAAAGT-A-TAA--TGAC-AAA--A-TA-GGACAAAA-AGTC--ACAGGAA-ACAAAGGTCACA-AGACAAACGAGA--ACA-CG--GCAAAGAAG--CA-CA-GGA-A-TAAAGT----CACAAAATTA-TAAAACTGTAA-GTCCA-AG-GGC-AGGC-TG-ATTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTAGT-GTTCGTA-ATCATCAAAT-ATTTC-TCATTCAAAAAATTTAGAAAGT--AGATA-AAAAATAA-ATTC-TCATAATAG-ATATAAAC-CC-TACTCA-TATTCTTATAACTTAACAAAA-G--AAGAAA----TA-TATTTC--G-AAATT--CTATATA-TATTTATTTTT-AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTGAAACATTTTTGTCCTGTGTCATCTTTTGTC-TTGTGTTTTGTTGTCCTGAGTGACTATTCTTGCTCC--TTCTTT-CTGGATTGTGGACTGTTATTG--T-CCATCGTCATATCTGATAGTCCGTATGAGA-CTGTTTCATTTCTGAT-GACTTTTTGTCCCGTGATGACTTTCCCTGTG--ACTTTCTGTCCCACATT
gi|20 : TGGG-ACAGAAA--GTCACAG--GAC-AAAAAGT---CAA--TCA--AAT--AGTA-GGACAAA
gi|20 : tttgtcacaattacgGGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-
gi|21 : tttgtcacaattacgtttgtcctactatttgat--CA-CA-GAATA-TA--GT----CACAAAATTAATAGAA-TGAAA-GTCAT-AG-GGT-AT-C-TG-ATTTTATca
gi|22 : GGAC-ATAAA-GTC--A-C---AGGACA-AA----AAGT-CACAAAAT--C-GATAGG-ACAAAAt
gi|23 : acGGACA-GAAAGTCA-CAGGAC-
gi|3 : acccttgattaaaaggtaaacGGACA-GAAAGCCA-CAGGAC-AAAAA-GGC--A-C---GG-ACA-T-----TAAT-CACAAAAT--C-GATAGG-ACAAAA--AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-CAC--A-T--NNNNNNNN-NNNN--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNNAAATTAATAGAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|3 : aacGTTTAGT-ACTT----ATCATCAAATTATTT--TCATC---AAACTATAGAAAGT-TAGACA-AAAA-TAA-ATTC-TCATAAAAT-GTATAAAC-CC-T-CTCA-TATTCTT-TAACTTAACAAAATG--AA--------TA-TATTTT--G-AAATT--C-ATATAACATTTA-TTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttagtacttatcatcaaattattttcatcaaactatagaaagttagacaaaaataaattctcataaaatgtataaaccctctcatattctttaacttaacaaaatgaatatattttgaaattcatataacatttatttaaaaaatcaatattttcatataa
gi|4 : aacggacagaaagccacaggacaaaaaggcacggacattaatcacaaaatcgataggacaaaaagtcacaggacaaaaagtcacaatgaccacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattaatagaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT----CACAAAATCGATAGAA-TAAAA-GTTAC-AG-GAC-AT-C-TG-ATTTTAT--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTATT-GCT---A-ATCATCGAATTATTT--TCATC---AAAATTTAGA---------TA-AAA-ATAA-ATTC-TCATAGAAA-GTATAAAC-CT-TACTTA-TATTATT-AAACTTGAC--AATG--AA--TACTCGTA-TATTTT--A-AAATT--C-ATTTAAAATTTA-TTT--AAAAAATCA-AT--AT-T-TCC-A-TA--TAA
gi|5 : AAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-CTTG-ATTTTA
gi|5 : -AAGTTAAGT-TCT--TA-ATCATCAAATTATTT--TCATC---AAAATTTAGAAAGT-TAGATT-AAAAATAA-ATTC-TCATATAAA-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--GAAAATT--C-ATATAACATTTATTTTAAAAAAAATCA-A---ATAT-TTC-A-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttaagttcttaatcatcaaattattttcatcaaaatttagaaagttagattaaaaataaattctcatataaagtataaaccctactcatattctttaacttaacaaaatgaatatattttgaaaattcatataacatttattttaaaaaaaatcaaatatttcatataaa
gi|6 : aaattaataaaatgaaagtcacagggcatcttgattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTAATAAAA-TGAAA-AT-ACAAG-GGT-AT-C-TG-ATTTTAT
gi|6 : ATCAAATTATTTC-ATAT-----AAATTTAGA--GG-TAGATA-AAAA-TAA-ATTC-TCATAAAAC--TGTAAAC-CC-TACTCA-TATTCTT-TAACTTATCAAAATG--AA--A--------TATTTC--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTCAA-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatcaaattatttcatataaatttagaggtagataaaaataaattctcataaaactgtaaaccctactcatattctttaacttatcaaaatgaaatatttcgaaattcatataacatttattttaaaaaatcaatattttcaatataaa
gi|7 : aattaataaaatgaaaatacaagggtatctgattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagAAATTGATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|7 : -AAGTT--G--GTTC-TA-ATCATCAAATGATTTT-T-ATC---AAAATTTAGAAAGT-TAGAT--AAAAATAA-TTTCTTCATATAA--GTATAAA--CC-TACTCG-TATTCTT-T-ACTTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttggttctaatcatcaaatgatttttatcaaaatttagaaagttagataaaaataatttcttcatataagtataaacctactcgtattctttactt
gi|8 : aaattgataaaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACA-GAAAGTCA-CAGGAC-AAAAA-ATC--A-C---AGGAC---A----TAGT-CACAAAAT--C-GATAGG-AC-AAAA-AGACACAG--GAC-AAAAAGTCA-CAC--TGAC---C--A-TA-
gi|9 : tgcattttttgctcaattgaggtgataccattcattggtaaacT-CAAATTAACAAAATG--AA--------TG-TATTTT--G-AAATT--C-ATATTACATTTATTTA--AGAAAATCA-AT--AA-T-TTC-G-TA--TAAACTG-TGACATTTTGTCC--TG-----------TGTC--------T-TTTTGTC-TTGTGACATTTT-TCCTG--TGAC--TTTTTGC-CC--TACTTTA-T-GATTGT-GACT-TT-TCG--T-ACATGGTCAT-T----TTGTCT----GTGA-CT-TATTG-TCCTG-T-TACTTTCTGACCtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAACCCACATATTTAAATATGCATACAAGTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 22222222 11111111111 111 11111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222 11 1111 11 333333333333 11 1 11 7777777777777777777777777 1 1 222 11 11 11 1111 1 1 11111 33333333 3333 1 2222222 1111 1 222222 11
lowQualScore : 4 4 3 0 4 55 4 3333 44444444 4 66 66 4 5 3 66 5 4 55 33333333333 4 55 777 44 4 4 222 4 66 00000 4 4 4 8888 0 2 3 3 3 3 3 3 4 4 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 8 3 6 55555 3 99 3333 5 55 55 9 5 5 1 00 5 5 5 4 444444444444 4 99 4 55 4 3 0 33 4 55 4 4 4 4 55 2 0 3 3 33 6666666666666666666666666 0 11 5 333 3 33 3 88 33 9999 2 0 0 55555 77777777 6666 0 6666666 2222 0 66 888 999999 88 2
lowQualScore : . . . . . .. . .... ........ . .. .. . . . .. . . .. ........... . .. ... .. . . ... . .. ..... . . . .... . . . . . . . . . . ............................................................................................................................ . . . ..... . .. .... . .. .. . . . . .. . . . . ............ . .. . .. . . . .. . .. . . . . .. . . . . .. ......................... . .. . ... . .. . .. .. .... . . . ..... ........ .... . ....... .... . .. ... ...... .. .
lowQualScore : 4 4 6 1 0 55 0 2222 77777777 4 99 44 4 0 6 99 0 0 55 55555555555 4 55 444 88 4 4 777 4 11 55555 4 4 4 5555 8 9 3 3 3 3 6 6 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 5 7 00000 6 44 0000 1 11 44 4 0 0 2 99 0 0 0 4 000000000000 0 55 0 55 0 2 8 55 0 55 0 0 0 0 55 5 0 2 2 88 8888888888888888888888888 0 22 0 222 2 88 2 00 88 2222 5 0 0 88888 88888888 5555 0 5555555 0000 0 00 000 555555 00 5
consensus : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-C---GGGACA-TA----TAGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACATT-TTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TACTTTACT-GATTGTGGACT-TT-TCG--T-NCATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTCG-TTCTG-T-NACTT-TCTGACCCGTGATGACTTTCCCTGTGGAACTTTCGGTCCCACATT
Reference ( family-2715 ) : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-C---GGGACA-TA----TAGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACATTTTTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TACTTTACT-GATTGTGGACT-TT-TCG--T-NCATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTCGTTTCTG-T-NACTT-TCTGACCCGTGATGACTTTCCCTGTGGAACTTTCGGTCCCACATT
gi|1 : GGCA-GGA-GTCAACAGGAC-AAAAAAGTC--A-CACAGGAACACTA----TAGT-CACAAAAT--G-AATAGG-ACCCCAA-AGACACAGTGGAC-AAAA-GTCA-CAA--TGACCAAC--A-TATGGACGAAA-AGTCCAAC-GGAC-A-AA-GGTCACATAGACAAA-AAAAACACA-GG--CCAAAAAAG--CA-CACGGACACTAAAGT----CACAAAATT-ATAAAA-TG-AA-GTCAC-AGCAGC-AT-C-TGCACTTTCTATT
gi|1 : tacctataataggtaacacT-AAGTTTAGTCATTA-TAGATCATCAATTCATTTCATCA-----AAAATTTAGAGAATGTAGCCATGAAAATAACATTC-TCATAAAAAAGTATCAACACCATACTCAGTATTCTT-TA-CCTAACCAAATATTGA--AT----TACTATTTTCAG-ACATTTGC-ATATAACAATTATTTC--AAAAAATCAGATTAAT-TATAC-ACTAATTAAACTGTTGAC-TTTTTTCCTATGTG--ACATTATTGTCCTGTGACGT-TTTAGTCTTTGTGAACTTTTGTCCT--ATG----CTTTTG-TCCTTTACTTTACT-GAATGTGATTT-CT-TTGATT-CCATGGTC--ATCT-ATTGTCCA---GTGA-CT-TTTCGGTTCTG-TGGACTTATCT--------ATG------TCTGTGGAACTTTTGATCCCACATTttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagtttagtcattatagatcatcaattcatttcatcaaaaatttagagaatgtagccatgaaaataacattctcataaaaaagtatcaacaccatactcagtattctttacctaaccaaatattgaattactattttcagacatttgcatataacaattatttcaaaaaatcagattaattatacactaattaaactgttgacttttttcctatgtgacattattgtcctgtgacgttttagtctttgtgaacttttgtcctatgcttttgtcctttactttactgaatgtgatttctttgattccatggtcatctattgtccagtgacttttcggttctgtggacttatctatgtctgtggaacttttgatcccacattc
gi|10 : tacctataataggtaacacggcaggagtcaacaggacaaaaaagtcacacaggaacactatagtcacaaaatgaataggaccccaaagacacagtggacaaaagtcacaatgaccaacatatggacgaaaagtccaacggacaaaggtcacatagacaaaaaaaacacaggccaaaaaagcacacggacactaaagtcacaaaattataaaatgaagtcacagcagcatctgcactttctattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna-AAT--G-TG-GGACAGAA-AGTC--ACAG-AC-G-AAAG-TCATA-GGACAAA-ATGA-C-CATGG--ACAAAAAA---CA-CA---ACA-GAAAGT----c
gi|11 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcct--AA----TG-TATTT---G-AAATT--C-ATATA-CATTTATTTA--AGAAAAATA-AT--AA-T-TTC-G-TA--TAAA-TG-TGACATTT-GTCC--TGT------------TCCT--------TTATGCT-GTGTGACATTTC-TCCTG-TTGAC--TTTT-GC-CC--TACTTTA-T-GATTGTGGACG-TT-TCG--TAACATGGTCAT-T----TTGTCT----GTGATCTATT--G-TTCTG-T-TACTT-TCTGACCcgctagatgtttatatga
gi|11 : atgAAGGTCATCAACATAAC-AACGAA-TGTGGTCAGAA-AGTA--ACAGAAC-A-ATAGATCACA--GACAAA-ATGA-C-CA-TGTTACGAAAC-GTCCA-CA-AT-CA-TAAAGTAGGGCA-AAAGTCAACAGGA--GAAATGTCAC-AC-AGC-AT-acattcgttgttatgttgatgacctt
gi|12 : atgaatgtatttgaaattcatatacatttatttaagaaaaataataatttcgtataaatgtgacatttgtcctgttcctttGGACA-GAAA-TCA-CAGGAC-AACAA-GTC--ACC---AGGACA-TA----AAG--CACAAAAT--C-GTAAGG-ACAAAAAGAG--ACAG--TAC---AAAGTCA-AAA--TGAC-CAC--A-TA-GGAT-AAA-AGTA--TCAGGCC-----AGGT-ACA-AGACAAA-AAGATCACA-GG--ACAAAAAAT--CAGCA-GGACA-TAAAGT----CAGCAAATT-AT-AAA-TGAAA-GTCAC-AG-GGCAAT-C-TG-ATTTT
gi|13 : cGGACA-GAAAGTCA-CAGGACAAAAAA-GTCCAG-C---TGGACA-TT----AAGTACAAAAAAT--C--ATAGG-ACAAAAA-GTTCACAG--GACAAAAAAGTCA-CAA--TGAC--------------CAA------T--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNAAAATCGATAGAA-TGAAA-GTCAC-AG-
gi|14 : aacTAGAAAAT-TAAATA-AGAA-TAA-TTTC-TCATAGAAT-GTATAAAC-CT-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--A-AA--------------ATTTATTCT---AAAAATCA-AT--AT-T-TTG-A-TA--TAAA
gi|15 : C--ATAGGAC-A-AAAGGTCACA-AGACAAA-A-GA-CGCA-GG--ACAAAA-AG--CA-CA-GGACA-TAAAGT----TACAAAATTAATAAAA-TGAAA-CTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|16 : tgaccaGGAC-AGAAA-GTC--A-C---AGGACA----------------AAATGAC-CAT-GG-ACAAAAA-AGT---AG--GAC-AAAATGTCA-CAA--T-----------TA-GGACAAAACAGTT--ACAAGAC-A-A
gi|17 : GGACA-GAAAGTCA-CAGGAA-ATAAA-GTC--A-C-----AACA-TATTACTAGT-CACAAcaccttcatctgtatatttt
gi|18 : tacattttttactcgtttacaggcgggtctaggaggttaatttttggggaacAAAGTCA-CAA--TGGC-AAC--A-TA-GGACAAAA-AGTC--ACAGGACAA-AAAGGTCACA-AGACAGA-AAGT-CACA-GG--A
gi|19 : cgggggcatacACAAAATG--AA--------TA-TATTTTC-G-AAATT--C-ATATAACATTTATTTTA-AAAAAATCA-AT--AT-T-TTC-A-TA--TAA
gi|2 : GGACACGAAAGTCA-CAGGAC-ACAAA-ATC--A-A---GAGACA-TAC---TAGT-CAAATAAT--CCGATAGGCACAAAAA-AGTCACAG--GAC-AAAAAGT-A-TAA--TGAC-AAA--A-TA-GGACAAAA-AGTC--ACAGGAA-ACAAAGGTCACA-AGACAAACGAGA--ACA-CG--GCAAAGAAG--CA-CA-GGA-A-TAAAGT----CACAAAATTA-TAAAACTGTAA-GTCCA-AG-GGC-AGGC-TG-ATTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTAGT-GTTCGTA-ATCATCAAAT-ATTTC-TCATTCAAAAAATTTAGAAAGT--AGATA-AAAAATAA-ATTC-TCATAATAG-ATATAAAC-CC-TACTCA-TATTCTTATAACTTAACAAAA-G--AAGAAA----TA-TATTTC--G-AAATT--CTATATA-TATTTATTTTT-AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTGAAACATTTTTGTCCTGTGTCATCTTTTGTC-TTGTGTTTTGTTGTCCTGAGTGACTATTCTTGCTCC--TTCTTT-CTGGATTGTGGACTGTTATTG--T-CCATCGTCATATCTGATAGTCCGTATGAGA-CTGTTTCATTTCTGAT-GACTT-TTTGTCCCGTGATGACTTTCCCTGTG--ACTTTCTGTCCCACATT
gi|20 : TGGG-ACAGAAA--GTCACAG--GAC-AAAAAGT---CAA--TCA--AAT--AGTA-GGACAAA
gi|20 : tttgtcacaattacgGGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-
gi|21 : tttgtcacaattacgtttgtcctactatttgat--CA-CA-GAATA-TA--GT----CACAAAATTAATAGAA-TGAAA-GTCAT-AG-GGT-AT-C-TG-ATTTTATca
gi|22 : GGAC-ATAAA-GTC--A-C---AGGACA-AA----AAGT-CACAAAAT--C-GATAGG-ACAAAAt
gi|23 : acGGACA-GAAAGTCA-CAGGAC-
gi|3 : acccttgattaaaaggtaaacGGACA-GAAAGCCA-CAGGAC-AAAAA-GGC--A-C---GG-ACA-T-----TAAT-CACAAAAT--C-GATAGG-ACAAAA--AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-CAC--A-T--NNNNNNNN-NNNN--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNNAAATTAATAGAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|3 : aacGTTTAGT-ACTT----ATCATCAAATTATTT--TCATC---AAACTATAGAAAGT-TAGACA-AAAA-TAA-ATTC-TCATAAAAT-GTATAAAC-CC-T-CTCA-TATTCTT-TAACTTAACAAAATG--AA--------TA-TATTTT--G-AAATT--C-ATATAACATTTA-TTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttagtacttatcatcaaattattttcatcaaactatagaaagttagacaaaaataaattctcataaaatgtataaaccctctcatattctttaacttaacaaaatgaatatattttgaaattcatataacatttatttaaaaaatcaatattttcatataa
gi|4 : aacggacagaaagccacaggacaaaaaggcacggacattaatcacaaaatcgataggacaaaaagtcacaggacaaaaagtcacaatgaccacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattaatagaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT----CACAAAATCGATAGAA-TAAAA-GTTAC-AG-GAC-AT-C-TG-ATTTTAT--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTATT-GCT---A-ATCATCGAATTATTT--TCATC---AAAATTTAGA---------TA-AAA-ATAA-ATTC-TCATAGAAA-GTATAAAC-CT-TACTTA-TATTATT-AAACTTGAC--AATG--AA--TACTCGTA-TATTTT--A-AAATT--C-ATTTAAAATTTA-TTT--AAAAAATCA-AT--AT-T-TCC-A-TA--TAA
gi|5 : AAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-CTTG-ATTTTA
gi|5 : -AAGTTAAGT-TCT--TA-ATCATCAAATTATTT--TCATC---AAAATTTAGAAAGT-TAGATT-AAAAATAA-ATTC-TCATATAAA-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--GAAAATT--C-ATATAACATTTATTTTAAAAAAAATCA-A---ATAT-TTC-A-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttaagttcttaatcatcaaattattttcatcaaaatttagaaagttagattaaaaataaattctcatataaagtataaaccctactcatattctttaacttaacaaaatgaatatattttgaaaattcatataacatttattttaaaaaaaatcaaatatttcatataaa
gi|6 : aaattaataaaatgaaagtcacagggcatcttgattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTAATAAAA-TGAAA-AT-ACAAG-GGT-AT-C-TG-ATTTTAT
gi|6 : ATCAAATTATTTC-ATAT-----AAATTTAGA--GG-TAGATA-AAAA-TAA-ATTC-TCATAAAAC--TGTAAAC-CC-TACTCA-TATTCTT-TAACTTATCAAAATG--AA--A--------TATTTC--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTCAA-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatcaaattatttcatataaatttagaggtagataaaaataaattctcataaaactgtaaaccctactcatattctttaacttatcaaaatgaaatatttcgaaattcatataacatttattttaaaaaatcaatattttcaatataaa
gi|7 : aattaataaaatgaaaatacaagggtatctgattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagAAATTGATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|7 : -AAGTT--G--GTTC-TA-ATCATCAAATGATTTT-T-ATC---AAAATTTAGAAAGT-TAGAT--AAAAATAA-TTTCTTCATATAA--GTATAAA--CC-TACTCG-TATTCTT-T-ACTTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttggttctaatcatcaaatgatttttatcaaaatttagaaagttagataaaaataatttcttcatataagtataaacctactcgtattctttactt
gi|8 : aaattgataaaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACA-GAAAGTCA-CAGGAC-AAAAA-ATC--A-C---AGGAC---A----TAGT-CACAAAAT--C-GATAGG-AC-AAAA-AGACACAG--GAC-AAAAAGTCA-CAC--TGAC---C--A-TA-
gi|9 : tgcattttttgctcaattgaggtgataccattcattggtaaacT-CAAATTAACAAAATG--AA--------TG-TATTTT--G-AAATT--C-ATATTACATTTATTTA--AGAAAATCA-AT--AA-T-TTC-G-TA--TAAACTG-TGACATTTTGTCC--TG-----------TGTC--------T-TTTTGTC-TTGTGACATTTT-TCCTG--TGAC--TTTTTGC-CC--TACTTTA-T-GATTGT-GACT-TT-TCG--T-ACATGGTCAT-T----TTGTCT----GTGA-CT-TATTG-TCCTG-T-TACTT-TCTGACCCtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAACCCACATATTTAAATATGCATACAAGTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 22222222 11111111111 111 11111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222 11 1111 11 333333333333 11 1 11 88888888888888888888888888 1 1 222 11 11 11 1111 1 1 11111 33333333 22222 1 22222222 1111 1 222222 11
lowQualScore : 4 4 3 0 4 55 4 3333 44444444 4 66 66 4 5 3 66 5 4 55 33333333333 4 55 777 44 4 4 222 4 66 00000 4 4 4 8888 0 2 3 3 3 3 3 3 4 4 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 8 3 6 55555 3 99 3333 5 55 55 9 5 5 1 00 5 5 5 4 444444444444 4 99 4 55 4 3 0 33 4 55 4 4 4 4 55 2 0 3 3 33 77777777777777777777777777 0 11 5 333 3 33 3 88 33 9999 2 0 0 55555 77777777 66666 0 55555555 2222 0 66 888 999999 88 2
lowQualScore : . . . . . .. . .... ........ . .. .. . . . .. . . .. ........... . .. ... .. . . ... . .. ..... . . . .... . . . . . . . . . . ............................................................................................................................ . . . ..... . .. .... . .. .. . . . . .. . . . . ............ . .. . .. . . . .. . .. . . . . .. . . . . .. .......................... . .. . ... . .. . .. .. .... . . . ..... ........ ..... . ........ .... . .. ... ...... .. .
lowQualScore : 4 4 6 1 0 55 0 2222 77777777 4 99 44 4 0 6 99 0 0 55 55555555555 4 55 444 88 4 4 777 4 11 55555 4 4 4 5555 8 9 3 3 3 3 6 6 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 5 7 00000 6 44 0000 1 11 44 4 0 0 2 99 0 0 0 4 000000000000 0 55 0 55 0 2 8 55 0 55 0 0 0 0 55 5 0 2 2 88 22222222222222222222222222 0 22 0 222 2 88 2 00 88 2222 5 0 0 88888 88888888 55555 0 00000000 0000 0 00 000 555555 00 5
consensus : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-C---GGGACA-TA----TAGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACA-TT-TTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TACTTTACT-GATTGTGGACT-TT-TCG--TN-CATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTC-G-TTCTG-T-NACTT-TCTGACCCGTGATGACTTTCCCTGTGGAACTTTCGGTCCCACATT
Reference ( family-2715 ) : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-C---GGGACA-TA----TAGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACA-TT-TTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TACTTTACT-GATTGTGGACT-TT-TCG--TN-CATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTC-G-TTCTG-T-NACTT-TCTGACCCGTGATGACTTTCCCTGTGGAACTTTCGGTCCCACATT
gi|1 : GGCA-GGA-GTCAACAGGAC-AAAAAAGTC--A-CACAGGAACACTA----TAGT-CACAAAAT--G-AATAGG-ACCCCAA-AGACACAGTGGAC-AAAA-GTCA-CAA--TGACCAAC--A-TATGGACGAAA-AGTCCAAC-GGAC-A-AA-GGTCACATAGACAAA-AAAAACACA-GG--CCAAAAAAG--CA-CACGGACACTAAAGT----CACAAAATT-ATAAAA-TG-AA-GTCAC-AGCAGC-AT-C-TGCACTTTCTATT
gi|1 : tacctataataggtaacacT-AAGTTTAGTCATTA-TAGATCATCAATTCATTTCATCA-----AAAATTTAGAGAATGTAGCCATGAAAATAACATTC-TCATAAAAAAGTATCAACACCATACTCAGTATTCTT-TA-CCTAACCAAATATTGA--AT----TACTATTTTCAG-ACATTTGC-ATATAACAATTATTTC--AAAAAATCAGATTAAT-TATAC-ACTAATTAAACTGTTGAC-TTTTTTCCTATGTG--ACA-TTATTGTCCTGTGACGT-TTTAGTCTTTGTGAACTTTTGTCCT--ATG----CTTTTG-TCCTTTACTTTACT-GAATGTGATTT-CT-TTGATTC-CATGGTC--ATCT-ATTGTCCA---GTGA-CT-TTTCGG-TTCTG-TGGACTTATCT--------ATG------TCTGTGGAACTTTTGATCCCACATTttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagtttagtcattatagatcatcaattcatttcatcaaaaatttagagaatgtagccatgaaaataacattctcataaaaaagtatcaacaccatactcagtattctttacctaaccaaatattgaattactattttcagacatttgcatataacaattatttcaaaaaatcagattaattatacactaattaaactgttgacttttttcctatgtgacattattgtcctgtgacgttttagtctttgtgaacttttgtcctatgcttttgtcctttactttactgaatgtgatttctttgattccatggtcatctattgtccagtgacttttcggttctgtggacttatctatgtctgtggaacttttgatcccacattc
gi|10 : tacctataataggtaacacggcaggagtcaacaggacaaaaaagtcacacaggaacactatagtcacaaaatgaataggaccccaaagacacagtggacaaaagtcacaatgaccaacatatggacgaaaagtccaacggacaaaggtcacatagacaaaaaaaacacaggccaaaaaagcacacggacactaaagtcacaaaattataaaatgaagtcacagcagcatctgcactttctattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna-AAT--G-TG-GGACAGAA-AGTC--ACAG-AC-G-AAAG-TCATA-GGACAAA-ATGA-C-CATGG--ACAAAAAA---CA-CA---ACA-GAAAGT----c
gi|11 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcct--AA----TG-TATTT---G-AAATT--C-ATATA-CATTTATTTA--AGAAAAATA-AT--AA-T-TTC-G-TA--TAAA-TG-TGACATTT-GTCC--TGT-------------TCCT--------TTATGCT-GTGTGACATTTC-TCCTG-TTGAC--TTTT-GC-CC--TACTTTA-T-GATTGTGGACG-TT-TCG--TAACATGGTCAT---T--TTGTCTG----TGATCTATT---G-TTCTG-T-TACTT-TCTGACCcgctagatgtttatatga
gi|11 : atgAAGGTCATCAACATAAC-AACGAA-TGTGGTCAGAA-AGTA--ACAGAAC-A-ATAGATCACA--GACAAA-ATGA-C-CA-TGTTACGAAAC-GTCCA-CA-AT-CA-TAAAGTAGGGCA-AAAGTCAACAGGA--GAAATGTCAC-AC-AGC-AT-acattcgttgttatgttgatgacctt
gi|12 : atgaatgtatttgaaattcatatacatttatttaagaaaaataataatttcgtataaatgtgacatttgtcctgttcctttGGACA-GAAA-TCA-CAGGAC-AACAA-GTC--ACC---AGGACA-TA----AAG--CACAAAAT--C-GTAAGG-ACAAAAAGAG--ACAG--TAC---AAAGTCA-AAA--TGAC-CAC--A-TA-GGAT-AAA-AGTA--TCAGGCC-----AGGT-ACA-AGACAAA-AAGATCACA-GG--ACAAAAAAT--CAGCA-GGACA-TAAAGT----CAGCAAATT-AT-AAA-TGAAA-GTCAC-AG-GGCAAT-C-TG-ATTTT
gi|13 : cGGACA-GAAAGTCA-CAGGACAAAAAA-GTCCAG-C---TGGACA-TT----AAGTACAAAAAAT--C--ATAGG-ACAAAAA-GTTCACAG--GACAAAAAAGTCA-CAA--TGAC--------------CAA------T--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNAAAATCGATAGAA-TGAAA-GTCAC-AG-
gi|14 : aacTAGAAAAT-TAAATA-AGAA-TAA-TTTC-TCATAGAAT-GTATAAAC-CT-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--A-AA--------------ATTTATTCT---AAAAATCA-AT--AT-T-TTG-A-TA--TAAA
gi|15 : C--ATAGGAC-A-AAAGGTCACA-AGACAAA-A-GA-CGCA-GG--ACAAAA-AG--CA-CA-GGACA-TAAAGT----TACAAAATTAATAAAA-TGAAA-CTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|16 : tgaccaGGAC-AGAAA-GTC--A-C---AGGACA----------------AAATGAC-CAT-GG-ACAAAAA-AGT---AG--GAC-AAAATGTCA-CAA--T-----------TA-GGACAAAACAGTT--ACAAGAC-A-A
gi|17 : GGACA-GAAAGTCA-CAGGAA-ATAAA-GTC--A-C-----AACA-TATTACTAGT-CACAAcaccttcatctgtatatttt
gi|18 : tacattttttactcgtttacaggcgggtctaggaggttaatttttggggaacAAAGTCA-CAA--TGGC-AAC--A-TA-GGACAAAA-AGTC--ACAGGACAA-AAAGGTCACA-AGACAGA-AAGT-CACA-GG--A
gi|19 : cgggggcatacACAAAATG--AA--------TA-TATTTTC-G-AAATT--C-ATATAACATTTATTTTA-AAAAAATCA-AT--AT-T-TTC-A-TA--TAA
gi|2 : GGACACGAAAGTCA-CAGGAC-ACAAA-ATC--A-A---GAGACA-TAC---TAGT-CAAATAAT--CCGATAGGCACAAAAA-AGTCACAG--GAC-AAAAAGT-A-TAA--TGAC-AAA--A-TA-GGACAAAA-AGTC--ACAGGAA-ACAAAGGTCACA-AGACAAACGAGA--ACA-CG--GCAAAGAAG--CA-CA-GGA-A-TAAAGT----CACAAAATTA-TAAAACTGTAA-GTCCA-AG-GGC-AGGC-TG-ATTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTAGT-GTTCGTA-ATCATCAAAT-ATTTC-TCATTCAAAAAATTTAGAAAGT--AGATA-AAAAATAA-ATTC-TCATAATAG-ATATAAAC-CC-TACTCA-TATTCTTATAACTTAACAAAA-G--AAGAAA----TA-TATTTC--G-AAATT--CTATATA-TATTTATTTTT-AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTGAAACATTT-TTGTCCTGTGTCATCTTTTGTC-TTGTGTTTTGTTGTCCTGAGTGACTATTCTTGCTCC--TTCTTT-CTGGATTGTGGACTGTTATTG--TC-CATCGTCATATCTGATAGTCCGTATGAGA-CTGTTTC-ATTTCTGAT-GACTT-TTTGTCCCGTGATGACTTTCCCTGTG--ACTTTCTGTCCCACATT
gi|20 : TGGG-ACAGAAA--GTCACAG--GAC-AAAAAGT---CAA--TCA--AAT--AGTA-GGACAAA
gi|20 : tttgtcacaattacgGGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-
gi|21 : tttgtcacaattacgtttgtcctactatttgat--CA-CA-GAATA-TA--GT----CACAAAATTAATAGAA-TGAAA-GTCAT-AG-GGT-AT-C-TG-ATTTTATca
gi|22 : GGAC-ATAAA-GTC--A-C---AGGACA-AA----AAGT-CACAAAAT--C-GATAGG-ACAAAAt
gi|23 : acGGACA-GAAAGTCA-CAGGAC-
gi|3 : acccttgattaaaaggtaaacGGACA-GAAAGCCA-CAGGAC-AAAAA-GGC--A-C---GG-ACA-T-----TAAT-CACAAAAT--C-GATAGG-ACAAAA--AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-CAC--A-T--NNNNNNNN-NNNN--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNNAAATTAATAGAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|3 : aacGTTTAGT-ACTT----ATCATCAAATTATTT--TCATC---AAACTATAGAAAGT-TAGACA-AAAA-TAA-ATTC-TCATAAAAT-GTATAAAC-CC-T-CTCA-TATTCTT-TAACTTAACAAAATG--AA--------TA-TATTTT--G-AAATT--C-ATATAACATTTA-TTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttagtacttatcatcaaattattttcatcaaactatagaaagttagacaaaaataaattctcataaaatgtataaaccctctcatattctttaacttaacaaaatgaatatattttgaaattcatataacatttatttaaaaaatcaatattttcatataa
gi|4 : aacggacagaaagccacaggacaaaaaggcacggacattaatcacaaaatcgataggacaaaaagtcacaggacaaaaagtcacaatgaccacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattaatagaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT----CACAAAATCGATAGAA-TAAAA-GTTAC-AG-GAC-AT-C-TG-ATTTTAT--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTATT-GCT---A-ATCATCGAATTATTT--TCATC---AAAATTTAGA---------TA-AAA-ATAA-ATTC-TCATAGAAA-GTATAAAC-CT-TACTTA-TATTATT-AAACTTGAC--AATG--AA--TACTCGTA-TATTTT--A-AAATT--C-ATTTAAAATTTA-TTT--AAAAAATCA-AT--AT-T-TCC-A-TA--TAA
gi|5 : AAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-CTTG-ATTTTA
gi|5 : -AAGTTAAGT-TCT--TA-ATCATCAAATTATTT--TCATC---AAAATTTAGAAAGT-TAGATT-AAAAATAA-ATTC-TCATATAAA-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--GAAAATT--C-ATATAACATTTATTTTAAAAAAAATCA-A---ATAT-TTC-A-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttaagttcttaatcatcaaattattttcatcaaaatttagaaagttagattaaaaataaattctcatataaagtataaaccctactcatattctttaacttaacaaaatgaatatattttgaaaattcatataacatttattttaaaaaaaatcaaatatttcatataaa
gi|6 : aaattaataaaatgaaagtcacagggcatcttgattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTAATAAAA-TGAAA-AT-ACAAG-GGT-AT-C-TG-ATTTTAT
gi|6 : ATCAAATTATTTC-ATAT-----AAATTTAGA--GG-TAGATA-AAAA-TAA-ATTC-TCATAAAAC--TGTAAAC-CC-TACTCA-TATTCTT-TAACTTATCAAAATG--AA--A--------TATTTC--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTCAA-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatcaaattatttcatataaatttagaggtagataaaaataaattctcataaaactgtaaaccctactcatattctttaacttatcaaaatgaaatatttcgaaattcatataacatttattttaaaaaatcaatattttcaatataaa
gi|7 : aattaataaaatgaaaatacaagggtatctgattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagAAATTGATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|7 : -AAGTT--G--GTTC-TA-ATCATCAAATGATTTT-T-ATC---AAAATTTAGAAAGT-TAGAT--AAAAATAA-TTTCTTCATATAA--GTATAAA--CC-TACTCG-TATTCTT-T-ACTTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttggttctaatcatcaaatgatttttatcaaaatttagaaagttagataaaaataatttcttcatataagtataaacctactcgtattctttactt
gi|8 : aaattgataaaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACA-GAAAGTCA-CAGGAC-AAAAA-ATC--A-C---AGGAC---A----TAGT-CACAAAAT--C-GATAGG-AC-AAAA-AGACACAG--GAC-AAAAAGTCA-CAC--TGAC---C--A-TA-
gi|9 : tgcattttttgctcaattgaggtgataccattcattggtaaacT-CAAATTAACAAAATG--AA--------TG-TATTTT--G-AAATT--C-ATATTACATTTATTTA--AGAAAATCA-AT--AA-T-TTC-G-TA--TAAACTG-TGACATTTTGTCC--TG------------TGTC--------T-TTTTGTC-TTGTGACATTTT-TCCTG--TGAC--TTTTTGC-CC--TACTTTA-T-GATTGT-GACT-TT-TCG--TA-CATGGTCAT-T----TTGTCT----GTGA-CT-TATT-G-TCCTG-T-TACTT-TCTGACCCtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAACCCACATATTTAAATATGCATACAAGTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 22222222 11111111111 111 11111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222 11 1111 11 333333333333 11 1 11 88888888888888888888888888 1 1 222 11 11 11 1111 1 1 11111 33333333 22222 1 22222222 1111 1 222222 11
lowQualScore : 4 4 3 0 4 55 4 3333 44444444 4 66 66 4 5 3 66 5 4 55 33333333333 4 55 777 44 4 4 222 4 66 00000 4 4 4 8888 0 2 3 3 3 3 3 3 4 4 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 8 3 6 55555 3 99 3333 5 55 55 9 5 5 1 00 5 5 5 4 444444444444 4 99 4 55 4 3 0 33 4 55 4 4 4 4 55 2 0 3 3 33 77777777777777777777777777 0 11 5 333 3 33 3 88 33 9999 2 0 0 55555 77777777 66666 0 55555555 2222 0 66 888 999999 88 2
lowQualScore : . . . . . .. . .... ........ . .. .. . . . .. . . .. ........... . .. ... .. . . ... . .. ..... . . . .... . . . . . . . . . . ............................................................................................................................ . . . ..... . .. .... . .. .. . . . . .. . . . . ............ . .. . .. . . . .. . .. . . . . .. . . . . .. .......................... . .. . ... . .. . .. .. .... . . . ..... ........ ..... . ........ .... . .. ... ...... .. .
lowQualScore : 4 4 6 1 0 55 0 2222 77777777 4 99 44 4 0 6 99 0 0 55 55555555555 4 55 444 88 4 4 777 4 11 55555 4 4 4 5555 8 9 3 3 3 3 6 6 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 5 7 00000 6 44 0000 1 11 44 4 0 0 2 99 0 0 0 4 000000000000 0 55 0 55 0 2 8 55 0 55 0 0 0 0 55 5 0 2 2 88 22222222222222222222222222 0 22 0 222 2 88 2 00 88 2222 5 0 0 88888 88888888 55555 0 00000000 0000 0 00 000 555555 00 5
consensus : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-C---GGGACA-TA----TAGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACA-TT-TTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TACTTTACT-GATTGTGGACT-TT-TCG--TN-CATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTC-G-TTCTG-T-NACTT-TCTGACCCGTGATGACTTTCCCTGTGGAACTTTCGGTCCCACATT
Reference ( family-2715 ) : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-C---GGGACA-TA----TAGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACA-TT-TTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TACTTTACT-GATTGTGGACT-TT-TCG--TN-CATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTC-G-TTCTG-T-NACTT-TCTGACCCGTGATGACTTTCCCTGTGGAACTTTCGGTCCCACATT
gi|1 : GGCA-GGA-GTCAACAGGAC-AAAAAAGTC--A-CACAGGAACACTA----TAGT-CACAAAAT--G-AATAGG-ACCCCAA-AGACACAGTGGAC-AAAA-GTCA-CAA--TGACCAAC--A-TATGGACGAAA-AGTCCAAC-GGAC-A-AA-GGTCACATAGACAAA-AAAAACACA-GG--CCAAAAAAG--CA-CACGGACACTAAAGT----CACAAAATT-ATAAAA-TG-AA-GTCAC-AGCAGC-AT-C-TGCACTTTCTATT
gi|1 : tacctataataggtaacacT-AAGTTTAGTCATTA-TAGATCATCAATTCATTTCATCA-----AAAATTTAGAGAATGTAGCCATGAAAATAACATTC-TCATAAAAAAGTATCAACACCATACTCAGTATTCTT-TA-CCTAACCAAATATTGA--AT----TACTATTTTCAG-ACATTTGC-ATATAACAATTATTTC--AAAAAATCAGATTAAT-TATAC-ACTAATTAAACTGTTGAC-TTTTTTCCTATGTG--ACA-TTATTGTCCTGTGACGT-TTTAGTCTTTGTGAACTTTTGTCCT--ATG----CTTTTG-TCCTTTACTTTACT-GAATGTGATTT-CT-TTGATTC-CATGGTC--ATCT-ATTGTCCA---GTGA-CT-TTTCGG-TTCTG-TGGACTTATCT--------ATG------TCTGTGGAACTTTTGATCCCACATTttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagtttagtcattatagatcatcaattcatttcatcaaaaatttagagaatgtagccatgaaaataacattctcataaaaaagtatcaacaccatactcagtattctttacctaaccaaatattgaattactattttcagacatttgcatataacaattatttcaaaaaatcagattaattatacactaattaaactgttgacttttttcctatgtgacattattgtcctgtgacgttttagtctttgtgaacttttgtcctatgcttttgtcctttactttactgaatgtgatttctttgattccatggtcatctattgtccagtgacttttcggttctgtggacttatctatgtctgtggaacttttgatcccacattc
gi|10 : tacctataataggtaacacggcaggagtcaacaggacaaaaaagtcacacaggaacactatagtcacaaaatgaataggaccccaaagacacagtggacaaaagtcacaatgaccaacatatggacgaaaagtccaacggacaaaggtcacatagacaaaaaaaacacaggccaaaaaagcacacggacactaaagtcacaaaattataaaatgaagtcacagcagcatctgcactttctattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna-AAT--G-TG-GGACAGAA-AGTC--ACAG-AC-G-AAAG-TCATA-GGACAAA-ATGA-C-CATGG--ACAAAAAA---CA-CA---ACA-GAAAGT----c
gi|11 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcct--AA----TG-TATTT---G-AAATT--C-ATATA-CATTTATTTA--AGAAAAATA-AT--AA-T-TTC-G-TA--TAAA-TG-TGACATTT-GTCC--TGT-------------TCCT--------TTATGCT-GTGTGACATTTC-TCCTG-TTGAC--TTTT-GC-CC--TACTTTA-T-GATTGTGGACG-TT-TCG--TAACATGGTCAT---T--TTGTCTG----TGATCTATT---G-TTCTG-T-TACTT-TCTGACCcgctagatgtttatatga
gi|11 : atgAAGGTCATCAACATAAC-AACGAA-TGTGGTCAGAA-AGTA--ACAGAAC-A-ATAGATCACA--GACAAA-ATGA-C-CA-TGTTACGAAAC-GTCCA-CA-AT-CA-TAAAGTAGGGCA-AAAGTCAACAGGA--GAAATGTCAC-AC-AGC-AT-acattcgttgttatgttgatgacctt
gi|12 : atgaatgtatttgaaattcatatacatttatttaagaaaaataataatttcgtataaatgtgacatttgtcctgttcctttGGACA-GAAA-TCA-CAGGAC-AACAA-GTC--ACC---AGGACA-TA----AAG--CACAAAAT--C-GTAAGG-ACAAAAAGAG--ACAG--TAC---AAAGTCA-AAA--TGAC-CAC--A-TA-GGAT-AAA-AGTA--TCAGGCC-----AGGT-ACA-AGACAAA-AAGATCACA-GG--ACAAAAAAT--CAGCA-GGACA-TAAAGT----CAGCAAATT-AT-AAA-TGAAA-GTCAC-AG-GGCAAT-C-TG-ATTTT
gi|13 : cGGACA-GAAAGTCA-CAGGACAAAAAA-GTCCAG-C---TGGACA-TT----AAGTACAAAAAAT--C--ATAGG-ACAAAAA-GTTCACAG--GACAAAAAAGTCA-CAA--TGAC--------------CAA------T--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNAAAATCGATAGAA-TGAAA-GTCAC-AG-
gi|14 : aacTAGAAAAT-TAAATA-AGAA-TAA-TTTC-TCATAGAAT-GTATAAAC-CT-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--A-AA--------------ATTTATTCT---AAAAATCA-AT--AT-T-TTG-A-TA--TAAA
gi|15 : C--ATAGGAC-A-AAAGGTCACA-AGACAAA-A-GA-CGCA-GG--ACAAAA-AG--CA-CA-GGACA-TAAAGT----TACAAAATTAATAAAA-TGAAA-CTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|16 : tgaccaGGAC-AGAAA-GTC--A-C---AGGACA----------------AAATGAC-CAT-GG-ACAAAAA-AGT---AG--GAC-AAAATGTCA-CAA--T-----------TA-GGACAAAACAGTT--ACAAGAC-A-A
gi|17 : GGACA-GAAAGTCA-CAGGAA-ATAAA-GTC--A-C-----AACA-TATTACTAGT-CACAAcaccttcatctgtatatttt
gi|18 : tacattttttactcgtttacaggcgggtctaggaggttaatttttggggaacAAAGTCA-CAA--TGGC-AAC--A-TA-GGACAAAA-AGTC--ACAGGACAA-AAAGGTCACA-AGACAGA-AAGT-CACA-GG--A
gi|19 : cgggggcatacACAAAATG--AA--------TA-TATTTTC-G-AAATT--C-ATATAACATTTATTTTA-AAAAAATCA-AT--AT-T-TTC-A-TA--TAA
gi|2 : GGACACGAAAGTCA-CAGGAC-ACAAA-ATC--A-A---GAGACA-TAC---TAGT-CAAATAAT--CCGATAGGCACAAAAA-AGTCACAG--GAC-AAAAAGT-A-TAA--TGAC-AAA--A-TA-GGACAAAA-AGTC--ACAGGAA-ACAAAGGTCACA-AGACAAACGAGA--ACA-CG--GCAAAGAAG--CA-CA-GGA-A-TAAAGT----CACAAAATTA-TAAAACTGTAA-GTCCA-AG-GGC-AGGC-TG-ATTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTAGT-GTTCGTA-ATCATCAAAT-ATTTC-TCATTCAAAAAATTTAGAAAGT--AGATA-AAAAATAA-ATTC-TCATAATAG-ATATAAAC-CC-TACTCA-TATTCTTATAACTTAACAAAA-G--AAGAAA----TA-TATTTC--G-AAATT--CTATATA-TATTTATTTTT-AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTGAAACATTT-TTGTCCTGTGTCATCTTTTGTC-TTGTGTTTTGTTGTCCTGAGTGACTATTCTTGCTCC--TTCTTT-CTGGATTGTGGACTGTTATTG--TC-CATCGTCATATCTGATAGTCCGTATGAGA-CTGTTTC-ATTTCTGAT-GACTT-TTTGTCCCGTGATGACTTTCCCTGTG--ACTTTCTGTCCCACATT
gi|20 : TGGG-ACAGAAA--GTCACAG--GAC-AAAAAGT---CAA--TCA--AAT--AGTA-GGACAAA
gi|20 : tttgtcacaattacgGGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-
gi|21 : tttgtcacaattacgtttgtcctactatttgat--CA-CA-GAATA-TA--GT----CACAAAATTAATAGAA-TGAAA-GTCAT-AG-GGT-AT-C-TG-ATTTTATca
gi|22 : GGAC-ATAAA-GTC--A-C---AGGACA-AA----AAGT-CACAAAAT--C-GATAGG-ACAAAAt
gi|23 : acGGACA-GAAAGTCA-CAGGAC-
gi|3 : acccttgattaaaaggtaaacGGACA-GAAAGCCA-CAGGAC-AAAAA-GGC--A-C---GG-ACA-T-----TAAT-CACAAAAT--C-GATAGG-ACAAAA--AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-CAC--A-T--NNNNNNNN-NNNN--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNNAAATTAATAGAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|3 : aacGTTTAGT-ACTT----ATCATCAAATTATTT--TCATC---AAACTATAGAAAGT-TAGACA-AAAA-TAA-ATTC-TCATAAAAT-GTATAAAC-CC-T-CTCA-TATTCTT-TAACTTAACAAAATG--AA--------TA-TATTTT--G-AAATT--C-ATATAACATTTA-TTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttagtacttatcatcaaattattttcatcaaactatagaaagttagacaaaaataaattctcataaaatgtataaaccctctcatattctttaacttaacaaaatgaatatattttgaaattcatataacatttatttaaaaaatcaatattttcatataa
gi|4 : aacggacagaaagccacaggacaaaaaggcacggacattaatcacaaaatcgataggacaaaaagtcacaggacaaaaagtcacaatgaccacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattaatagaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT----CACAAAATCGATAGAA-TAAAA-GTTAC-AG-GAC-AT-C-TG-ATTTTAT--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTATT-GCT---A-ATCATCGAATTATTT--TCATC---AAAATTTAGA---------TA-AAA-ATAA-ATTC-TCATAGAAA-GTATAAAC-CT-TACTTA-TATTATT-AAACTTGAC--AATG--AA--TACTCGTA-TATTTT--A-AAATT--C-ATTTAAAATTTA-TTT--AAAAAATCA-AT--AT-T-TCC-A-TA--TAA
gi|5 : AAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-CTTG-ATTTTA
gi|5 : -AAGTTAAGT-TCT--TA-ATCATCAAATTATTT--TCATC---AAAATTTAGAAAGT-TAGATT-AAAAATAA-ATTC-TCATATAAA-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG------AA----TA-TATTTT--GAAAATT--C-ATATAACATTTATTTTAAAAAAAATCA-A---ATAT-TTC-A-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttaagttcttaatcatcaaattattttcatcaaaatttagaaagttagattaaaaataaattctcatataaagtataaaccctactcatattctttaacttaacaaaatgaatatattttgaaaattcatataacatttattttaaaaaaaatcaaatatttcatataaa
gi|6 : aaattaataaaatgaaagtcacagggcatcttgattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTAATAAAA-TGAAA-AT-ACAAG-GGT-AT-C-TG-ATTTTAT
gi|6 : ATCAAATTATTTC-ATAT-----AAATTTAGA--GG-TAGATA-AAAA-TAA-ATTC-TCATAAAAC--TGTAAAC-CC-TACTCA-TATTCTT-TAACTTATCAAAATG--AA--A--------TATTTC--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTCAA-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatcaaattatttcatataaatttagaggtagataaaaataaattctcataaaactgtaaaccctactcatattctttaacttatcaaaatgaaatatttcgaaattcatataacatttattttaaaaaatcaatattttcaatataaa
gi|7 : aattaataaaatgaaaatacaagggtatctgattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagAAATTGATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|7 : -AAGTT--G--GTTC-TA-ATCATCAAATGATTTT-T-ATC---AAAATTTAGAAAGT-TAGAT--AAAAATAA-TTTCTTCATATAA--GTATAAA--CC-TACTCG-TATTCTT-T-ACTTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttggttctaatcatcaaatgatttttatcaaaatttagaaagttagataaaaataatttcttcatataagtataaacctactcgtattctttactt
gi|8 : aaattgataaaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACA-GAAAGTCA-CAGGAC-AAAAA-ATC--A-C---AGGAC---A----TAGT-CACAAAAT--C-GATAGG-AC-AAAA-AGACACAG--GAC-AAAAAGTCA-CAC--TGAC---C--A-TA-
gi|9 : tgcattttttgctcaattgaggtgataccattcattggtaaacT-CAAATTAACAAAATG--AA--------TG-TATTTT--G-AAATT--C-ATATTACATTTATTTA--AGAAAATCA-AT--AA-T-TTC-G-TA--TAAACTG-TGACATTTTGTCC--TG------------TGTC--------T-TTTTGTC-TTGTGACATTTT-TCCTG--TGAC--TTTTTGC-CC--TACTTTA-T-GATTGT-GACT-TT-TCG--TA-CATGGTCAT-T----TTGTCT----GTGA-CT-TATT-G-TCCTG-T-TACTT-TCTGACCCtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
blockSeqs : C . A . CA C A TATTACT A GA CG C G T . A T CA AACGAATGT C . AA G C T TCA T TT CGTC G . . AGGG A C T A . A G T . TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N T . CGTA T C TCAA A T A A . T G T . . . A AATACTCG . C A . T A AA . . A . A . . C . A T . TGAAACATTTTTGTCCTGTGTCATC . CA G GAG A TA T CT . CTG G G A TAA ATATCTGA GTATG T GTTTCAT ATG . GA GTG ACTTTC . T
blockSeqs : . . . . . . T TACT . . G . . T . . . . AATAGTA . . AC A . T NN . . AAT . . . . G . . . . . . . . . T . CTA T C C A T A A . . A G . . . . AAGAAA . . . . . A A . . . . . . . C . A T . TTCCT . TT . GT A . T C . AT G . . TC ATT G . TATTG TT . GT
blockSeqs : . . . . . . A TAA . . C . . T . . . . AATGTG . . G N . A CG . . NNN . . . . A . . . . . . . . . T . TA T T C A T A A . . A T . . . . AAA . . . . . A T . . . . . . . . . A . . TGTCT . CA . G A . . C . AT . . . TA ATT G . ATTG TT . GA
blockSeqs : . . . . . . G TTA . . G . . T . . . . CACATA . . A A . N CA . . AAG . . . . A . . . . . . . . . A . T T . C A T A A . . G A . . . . AA . . . . . A . . . . . . . .
blockSeqs : . . . . . . A AAA . . G . . T . . . . AACATA . . N A . A NN . . NNN . . . . A . . . . . . . . . . A G . C A T T . . . T A . . . . AA . . . . . A . . . . . . . .
blockSeqs : . . . . . . G TT . . G . . A . . . . AAAATA . . A A . A C . . AA . . . . A . . . . . . . . . . . . . A . . . A C . . . . AA . . . . . A . . . . . . . .
blockSeqs : . . . . . . A AT . . . . . . . . . . CACAT . . A N . N C . . AG . . . . G . . . . . . . . . . . . . . T . . . . . AA . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . CATA . . N . . . A . . . . . . A . . . . . . . . . AA . . . . . . . . . . . . . .
blockSeqs : . . . . . . TA . . . A . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . G . . . . . .
blockSeqs : . . . . .
blockSeqCons : A*** TAN***** ** AACATA***** ** A* CA* CTA** ** C*** T* A* N* AA********** ** ** ** **
originalCons : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-C---GGGACA-TA----TAGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTTC-TCATC---AAAATTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATG--AA--AA----TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACA-TT-TTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TACTTTACT-GATTGTGGACT-TT-TCG--TN-CATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTC-G-TTCTG-T-NACTT-TCTGACCCGTGATGACTTTCCCTGTGGAACTTTCGGTCCCACATT
finalCons : GGACA-GAAAGTCA-CAGGAC-AAAAA-GTC--A-CA---GGACATAN-----AGT-CACAAAAT--C-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGACAACATA-----GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACAA-GACAAA-AAGACA-CA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTCTA--ATCATCAAATTATTT--TCATC---AAAATTTAGAAAGTT-AGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAATGAA----------TA-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACA-TT-TTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TACTTTACT-GATTGTGGACT-TT-TCG--TN-CATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTC-G-TTCTG-T-NACTT-TCTGACCCGTGATGACTTTCCCTGTGGAACTTTCGGTCCCACATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAACCCACATATTTAAATATGCATACAAGTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 2222222 11111111111 111 11111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222 11 111 11 222222 11 1 11 88888888888888888888888888 1 1 222 11 11 11 1111 1 1 11111 33333333 22222 1 22222222 1111 1 222222 11
lowQualScore : 4 4 8 4 99999999 4 8888888 4 66 4 5 3 66 5 4 55 33333333333 4 55 777 44 4 4 222 4 66 00000 4 4 4 8888 0 2 3 3 3 3 3 3 4 4 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 8 3 6 55555 3 00 000 5 5 55 55 9 5 5 1 00 5 5 5 4 777 000000 4 4 99 4 55 4 3 0 33 4 55 4 4 4 4 55 2 0 3 3 33 77777777777777777777777777 0 11 5 333 3 33 3 88 33 9999 2 0 0 55555 77777777 66666 0 55555555 2222 0 66 888 999999 88 2
lowQualScore : . . . . ........ . ....... . .. . . . .. . . .. ........... . .. ... .. . . ... . .. ..... . . . .... . . . . . . . . . . ............................................................................................................................ . . . ..... . .. ... . . .. .. . . . . .. . . . . ... ...... . . .. . .. . . . .. . .. . . . . .. . . . . .. .......................... . .. . ... . .. . .. .. .... . . . ..... ........ ..... . ........ .... . .. ... ...... .. .
lowQualScore : 0 0 0 0 22222222 4 2222222 4 44 4 0 6 99 0 0 55 55555555555 4 55 444 88 4 4 777 4 11 55555 4 4 4 5555 8 9 3 3 3 3 6 6 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 5 7 00000 6 77 000 7 1 11 44 4 0 0 2 99 0 0 0 4 000 000000 0 0 55 0 55 0 2 8 55 0 55 0 0 0 0 55 5 0 2 2 88 22222222222222222222222222 0 22 0 222 2 88 2 00 88 2222 5 0 0 88888 88888888 55555 0 00000000 0000 0 00 000 555555 00 5
consensus : GGACA-GAAAGTCA-CAGGACAAAAA-GTCA-CA---G---GACA-TA----N-AGT-CACAAAATC-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTT-TCATC---AAAA-TTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAAT---GAA------T-A-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACA-TT-TTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TACTTTACT-GATTGTGGACT-TT-TCG--TN-CATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTC-G-TTCTG-T-NACTT-TCTGACCCGTGATGACTTTCCCTGTGGAACTTTCGGTCCCACATT
Reference ( family-2715 ) : GGACA-GAAAGTCA-CAGGACAAAAA-GTCA-CA---G---GACA-TA----N-AGT-CACAAAATC-GATAGG-ACAAAAA-AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-AAC--A-TA-GGACAAAA-AGTC--ACAGGAC-A-AAAGGTCACA-AGACAAA-AAGA-CACA-GG--ACAAAAAAG--CA-CA-GGACA-TAAAGT----CACAAAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTAGT-GCTC-TA-ATCATCAAATTATTT-TCATC---AAAA-TTTAGAAAGT-TAGATA-AAAAATAA-ATTC-TCATAAAAN-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAAT---GAA------T-A-TATTTT--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTG--ACA-TT-TTGTCCTGTG-CGT-TTTTGTC-TTGTGACNTTTTGTCCTG-NTGAC--TTTTTGCTCC--TACTTTACT-GATTGTGGACT-TT-TCG--TN-CATGGTCATATCT-ATTGTCCG---GTGA-CTGTTTC-G-TTCTG-T-NACTT-TCTGACCCGTGATGACTTTCCCTGTGGAACTTTCGGTCCCACATT
gi|1 : GGCA-GGA-GTCAACAGGACAAAAAAGTCA-CACAGG---AACACTA----T-AGT-CACAAAATG-AATAGG-ACCCCAA-AGACACAGTGGAC-AAAA-GTCA-CAA--TGACCAAC--A-TATGGACGAAA-AGTCCAAC-GGAC-A-AA-GGTCACATAGACAAA-AAAAACACA-GG--CCAAAAAAG--CA-CACGGACACTAAAGT----CACAAAATT-ATAAAA-TG-AA-GTCAC-AGCAGC-AT-C-TGCACTTTCTATT
gi|1 : tacctataataggtaacacT-AAGTTTAGTCATTA-TAGATCATCAATTCATTT--CATC---AAAAATTTAGAGAATGTAGCCATGAAAATAACATTC-TCATAAAAAAGTATCAACACCATACTCAGTATTCTT-TA-CCTAACCAAATATTGAA------TTACTATTTTCAG-ACATTTGC-ATATAACAATTATTTC--AAAAAATCAGATTAAT-TATAC-ACTAATTAAACTGTTGAC-TTTTTTCCTATGTG--ACA-TTATTGTCCTGTGACGT-TTTAGTCTTTGTGAACTTTTGTCCT--ATG----CTTTTG-TCCTTTACTTTACT-GAATGTGATTT-CT-TTGATTC-CATGGTC--ATCT-ATTGTCCA---GTGA-CT-TTTCGG-TTCTG-TGGACTTATCT--------ATG------TCTGTGGAACTTTTGATCCCACATTttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagtttagtcattatagatcatcaattcatttcatcaaaaatttagagaatgtagccatgaaaataacattctcataaaaaagtatcaacaccatactcagtattctttacctaaccaaatattgaattactattttcagacatttgcatataacaattatttcaaaaaatcagattaattatacactaattaaactgttgacttttttcctatgtgacattattgtcctgtgacgttttagtctttgtgaacttttgtcctatgcttttgtcctttactttactgaatgtgatttctttgattccatggtcatctattgtccagtgacttttcggttctgtggacttatctatgtctgtggaacttttgatcccacattc
gi|10 : tacctataataggtaacacggcaggagtcaacaggacaaaaaagtcacacaggaacactatagtcacaaaatgaataggaccccaaagacacagtggacaaaagtcacaatgaccaacatatggacgaaaagtccaacggacaaaggtcacatagacaaaaaaaacacaggccaaaaaagcacacggacactaaagtcacaaaattataaaatgaagtcacagcagcatctgcactttctattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna-AAT--G-TG-GGACAGAA-AGTC--ACAG-AC-G-AAAG-TCATA-GGACAAA-ATGA-C-CATGG--ACAAAAAA---CA-CA---ACA-GAAAGT----c
gi|11 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctAT---GAA------T-G-TATTT---G-AAATT--C-ATATA-CATTTATTTA--AGAAAAATA-AT--AA-T-TTC-G-TA--TAAA-TG-TGACATTT-GTCC--TGT-------------TCCT--------TTATGCT-GTGTGACATTTC-TCCTG-TTGAC--TTTT-GC-CC--TACTTTA-T-GATTGTGGACG-TT-TCG--TAACATGGTCAT---T--TTGTCTG----TGATCTATT---G-TTCTG-T-TACTT-TCTGACCcgctagatgtttatatga
gi|11 : AAGGTCATCAACATAAC-AACGAA-TGTGGTCAGAA-AGTA--ACAGAAC-A-ATAGATCACA--GACAAA-ATGA-C-CA-TGTTACGAAAC-GTCCA-CA-AT-CA-TAAAGTAGGGCA-AAAGTCAACAGGA--GAAATGTCAC-AC-AGC-AT-acattcgttgttatgttgatgacctt
gi|12 : atgaatgtatttgaaattcatatacatttatttaagaaaaataataatttcgtataaatgtgacatttgtcctgttcctttGGACA-GAAA-TCA-CAGGACAACAA-GTCACCA---G---GACA-TA----A-AG--CACAAAATC-GTAAGG-ACAAAAAGAG--ACAG--TAC---AAAGTCA-AAA--TGAC-CAC--A-TA-GGAT-AAA-AGTA--TCAGGCC-----AGGT-ACA-AGACAAA-AAGATCACA-GG--ACAAAAAAT--CAGCA-GGACA-TAAAGT----CAGCAAATT-AT-AAA-TGAAA-GTCAC-AG-GGCAAT-C-TG-ATTTT
gi|13 : cGGACA-GAAAGTCA-CAGGACAAAAAAGTC--CA---GCTGGACA-TT----A-AGTACAAAAAATC--ATAGG-ACAAAAA-GTTCACAG--GACAAAAAAGTCA-CAA--TGAC--------------CAA------T--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNAAAATCGATAGAA-TGAAA-GTCAC-AG-
gi|14 : aacTAGAAAAT-TAAATA-AGAA-TAA-TTTC-TCATAGAAT-GTATAAAC-CT-TACTCA-TATTCTT-TAACTTAACAAAAT---GAA------T-A-TATTTT--A-AA--------------ATTTATTCT---AAAAATCA-AT--AT-T-TTG-A-TA--TAAA
gi|15 : C--ATAGGAC-A-AAAGGTCACA-AGACAAA-A-GA-CGCA-GG--ACAAAA-AG--CA-CA-GGACA-TAAAGT----TACAAAATTAATAAAA-TGAAA-CTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|16 : tgaccaGGACA-GAAAGTCA-CAGGACAAAA---TGA-C----------CA-T-------------------------GG-ACAAAAA-AGT---AG--GAC-AAAATGTCA-CAA--T-----------TA-GGACAAAACAGTT--ACAAGAC-A-A
gi|17 : GGACA-GAAAGTCA-CAGGAAATAAA-GTCA-CA--------ACA-TATTACT-AGT-CACAAcaccttcatctgtatatttt
gi|18 : tacattttttactcgtttacaggcgggtctaggaggttaatttttggggaacAAAGTCA-CAA--TGGC-AAC--A-TA-GGACAAAA-AGTC--ACAGGACAA-AAAGGTCACA-AGACAGA-AAGT-CACA-GG--A
gi|19 : cgggggcatacACAAAAT---GAA------T-A-TATTTTC-G-AAATT--C-ATATAACATTTATTTTA-AAAAAATCA-AT--AT-T-TTC-A-TA--TAA
gi|2 : GGACACGAAAGTCA-CAGGACACAAA-ATCA-AG---A---GACA-TA----CTAGT-CAAATAATCCGATAGGCACAAAAA-AGTCACAG--GAC-AAAAAGT-A-TAA--TGAC-AAA--A-TA-GGACAAAA-AGTC--ACAGGAA-ACAAAGGTCACA-AGACAAACGAGA--ACA-CG--GCAAAGAAG--CA-CA-GGA-A-TAAAGT----CACAAAATTA-TAAAACTGTAA-GTCCA-AG-GGC-AGGC-TG-ATTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTAGT-GTTCGTA-ATCATCAAAT-ATTTCTCATTCAAAAAA-TTTAGAAAGT--AGATA-AAAAATAA-ATTC-TCATAATAG-ATATAAAC-CC-TACTCA-TATTCTTATAACTTAACAAAA----GAAGAAA--T-A-TATTTC--G-AAATT--CTATATA-TATTTATTTTT-AAAAAATCA-AT--AT-T-TTC-A-TA--TAAACTG-TGACATTTTGTCC--TGTGAAACATTT-TTGTCCTGTGTCATCTTTTGTC-TTGTGTTTTGTTGTCCTGAGTGACTATTCTTGCTCC--TTCTTT-CTGGATTGTGGACTGTTATTG--TC-CATCGTCATATCTGATAGTCCGTATGAGA-CTGTTTC-ATTTCTGAT-GACTT-TTTGTCCCGTGATGACTTTCCCTGTG--ACTTTCTGTCCCACATT
gi|20 : TGGG-ACAGAAA--GTCACAG--GAC-AAAAAGT---CAA--TCA--AAT--AGTA-GGACAAA
gi|20 : tttgtcacaattacgGGACA-GAAAGTCA-CAGGACAAAAA-GTCA-
gi|21 : tttgtcacaattacgtttgtcctactatttgat--CA-CA-GAATA-TA--GT----CACAAAATTAATAGAA-TGAAA-GTCAT-AG-GGT-AT-C-TG-ATTTTATca
gi|22 : GGACATAAA-GTCA-CA---G---GACA-AA----A-AGT-CACAAAATC-GATAGG-ACAAAAt
gi|23 : acGGACA-GAAAGTCA-CAGGAC
gi|3 : acccttgattaaaaggtaaacGGACA-GAAAGCCA-CAGGACAAAAA-GGCA-C----G---GACA-T-----T-AAT-CACAAAATC-GATAGG-ACAAAA--AGTCACAG--GAC-AAAAAGTCA-CAA--TGAC-CAC--A-T--NNNNNNNN-NNNN--NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNN-NNNN-NN--NNNNNNNNN--NN-NN-NNNNN-NNNNNN----NNNNAAATTAATAGAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|3 : aacGTTTAGT-ACTT----ATCATCAAATTATTT-TCATC---AAAC-TATAGAAAGT-TAGACA-AAAA-TAA-ATTC-TCATAAAAT-GTATAAAC-CC-T-CTCA-TATTCTT-TAACTTAACAAAAT---GAA------T-A-TATTTT--G-AAATT--C-ATATAACATTTA-TTT--AAAAAATCA-AT--AT-T-TTC-A-TA--TAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttagtacttatcatcaaattattttcatcaaactatagaaagttagacaaaaataaattctcataaaatgtataaaccctctcatattctttaacttaacaaaatgaatatattttgaaattcatataacatttatttaaaaaatcaatattttcatataa
gi|4 : aacggacagaaagccacaggacaaaaaggcacggacattaatcacaaaatcgataggacaaaaagtcacaggacaaaaagtcacaatgaccacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattaatagaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT----CACAAAATCGATAGAA-TAAAA-GTTAC-AG-GAC-AT-C-TG-ATTTTAT--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-AAGTTTATT-GCT---A-ATCATCGAATTATTT-TCATC---AAAA-TTTAGA---------TA-AAA-ATAA-ATTC-TCATAGAAA-GTATAAAC-CT-TACTTA-TATTATT-AAACTTGAC--AAT---GAATACTCGT-A-TATTTT--A-AAATT--C-ATTTAAAATTTA-TTT--AAAAAATCA-AT--AT-T-TCC-A-TA--TAA
gi|5 : AAATTAATAAAA-TGAAA-GTCAC-AG-GGC-AT-CTTG-ATTTTA
gi|5 : -AAGTTAAGT-TCT--TA-ATCATCAAATTATTT-TCATC---AAAA-TTTAGAAAGT-TAGATT-AAAAATAA-ATTC-TCATATAAA-GTATAAAC-CC-TACTCA-TATTCTT-TAACTTAACAAAAT---GAA------T-A-TATTTT--GAAAATT--C-ATATAACATTTATTTTAAAAAAAATCA-A---ATAT-TTC-A-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttaagttcttaatcatcaaattattttcatcaaaatttagaaagttagattaaaaataaattctcatataaagtataaaccctactcatattctttaacttaacaaaatgaatatattttgaaaattcatataacatttattttaaaaaaaatcaaatatttcatataaa
gi|6 : aaattaataaaatgaaagtcacagggcatcttgattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTAATAAAA-TGAAA-AT-ACAAG-GGT-AT-C-TG-ATTTTAT
gi|6 : ATCAAATTATTT--CATA---TAAA-TTTAGA--GG-TAGATA-AAAA-TAA-ATTC-TCATAAAAC--TGTAAAC-CC-TACTCA-TATTCTT-TAACTTATCAAAAT---GAA--------A-TATTTC--G-AAATT--C-ATATAACATTTATTTT--AAAAAATCA-AT--AT-T-TTCAA-TA--TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatcaaattatttcatataaatttagaggtagataaaaataaattctcataaaactgtaaaccctactcatattctttaacttatcaaaatgaaatatttcgaaattcatataacatttattttaaaaaatcaatattttcaatataaa
gi|7 : aattaataaaatgaaaatacaagggtatctgattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagAAATTGATAAAA-TGAAA-GTCAC-AG-GGC-AT-C-TG-ATTTTAT
gi|7 : -AAGTT--G--GTTC-TA-ATCATCAAATGATTT-TTATC---AAAA-TTTAGAAAGT-TAGAT--AAAAATAA-TTTCTTCATATAA--GTATAAA--CC-TACTCG-TATTCTT-T-ACTTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagttggttctaatcatcaaatgatttttatcaaaatttagaaagttagataaaaataatttcttcatataagtataaacctactcgtattctttactt
gi|8 : aaattgataaaatgaaagtcacagggcatctgattttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACA-GAAAGTCA-CAGGACAAAAA-ATCA-CA---G---GACA-T-------AGT-CACAAAATC-GATAGG-AC-AAAA-AGACACAG--GAC-AAAAAGTCA-CAC--TGAC---C--A-TA-
gi|9 : tgcattttttgctcaattgaggtgataccattcattggtaaacT-CAAATTAACAAAAT---GAA------T-G-TATTTT--G-AAATT--C-ATATTACATTTATTTA--AGAAAATCA-AT--AA-T-TTC-G-TA--TAAACTG-TGACATTTTGTCC--TG------------TGTC--------T-TTTTGTC-TTGTGACATTTT-TCCTG--TGAC--TTTTTGC-CC--TACTTTA-T-GATTGT-GACT-TT-TCG--TA-CATGGTCAT-T----TTGTCT----GTGA-CT-TATT-G-TCCTG-T-TACTT-TCTGACCCtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAACCCACATATTTAAATATGCATACAAGTTT