lowQualScore : 1 333 4444444444444 111 444444 11 1 11 11111 111 222 111111 111 1 1 3333 1111 33333333333 1111 11111 111111 111111 1 111 22222222222222222222222 11 111 1 2222 111111 111
lowQualScore : 6 0 6 999 3 4444444444444 55 555 4 777 111111 33 55 8 1 55 99 8 4 7777 777 2 4 3 66 11 00000 99 3 4 1 4 1 4 777 4 4 4 000 777 4 4 0 1 111 4 4 4 4 77 444444 66 000 4 4 2 1 0000 4 6 0000 00000000000 7777 4 4 99999 4 4 666 4 4 55 4 3 111111 1 777 4 4 2 4 2 8888 3 99 111111 4 3 4 99 1 4 8888 4 4 4 4 55 99 4 888 4 66 6 6 4 77 4 4 4 00000000000000000000000 22 777 6 99 2 5 1 5 0 1111 444444 000 5
lowQualScore : . . . ... . ............. .. ... . ... ...... .. .. . . .. .. . . .... ... . . . .. .. ..... .. . . . . . . ... . . . ... ... . . . . ... . . . . .. ...... .. ... . . . . .... . . .... ........... .... . . ..... . . ... . . .. . . ...... . ... . . . . . .... . .. ...... . . . .. . . .... . . . . .. .. . ... . .. . . . .. . . . ....................... .. ... . .. . . . . . .... ...... ... .
lowQualScore : 7 0 0 777 0 8888888888888 55 888 0 000 444444 55 55 0 2 55 55 2 0 5555 000 1 4 1 11 44 00000 55 9 0 1 0 2 0 000 0 0 4 888 000 0 0 7 3 111 4 4 4 4 44 999999 11 111 4 1 5 7 9999 0 2 2222 00000000000 3333 0 0 66666 0 0 777 0 0 55 0 0 555555 9 000 0 0 6 1 5 1111 0 55 555555 0 2 4 55 7 0 5555 0 0 0 0 55 55 0 999 4 88 0 0 4 11 4 4 4 77777777777777777777777 99 555 0 11 0 0 6 0 2 9999 444444 000 7
consensus : AGCTTCTGCTGACTTCATCG-TGTCG--CGTGTTCTNTGNT-A-ATGG-G-ATAAT--GACGA-C-AG-AG---AACCC--AA--CATT--TC-ATCGAGC-TGA--TCTTTGTTTATT-TTCCGAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTT-AGGCGGT-----AA--TGTTCT-AAACT-CGGAATT-CCTAG---ATT-T-GTAAGTAGAG---GTT-A-AGGAGACATCATTTGATTTTA--GTATT-G-ATTTC-AAGTCGG-CAATGATTTGT----TTGAG--TTCCG-T-AATTTTCTGTGTGATTTCNTCT---GTA-TTTTTATTCAGGGTAGATA-G------GTGTTTG--TT-TTTCAT-TTCC--TGAAT-GTCGG-A--TT-T-CCGTCGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGACTTCTCCT---TGTT-G-GTCGGCANCTNTTG---TTAGT--TTC------CCGTA-ATTCGTTTCTAAC--TCGGCTTTCTCAG-TTTGG----ATA-T-CG-GA-CGCCA--TTTCTTCATA--TCG-GGGANAA-AT-NCTGGTCTCTAGTTCTTCCAGA-TCC-TTT-TGT-A-AA-CT-TTG-TGTTTTAGCGCTGAGTTTTTCCAGAANNTCTGATANN-TTGTGACCTTTG-TGTTTAC-CTGAGGAGACG-CAGGTAGN-ACA------GACAG---GA-ATGTCACAT
Reference ( gi|3 ) : AGCTTCTGGTGACTTCATTG-TGCCACTCATGTTCTTTTGT-A-ATGG-GCATAAT--GATGA-A-AG-AG---A--CT--AA--CATT--TC-ATTGAGT-TGA--TCTTTGTTAATT-TTTTGAGGA---GAGAAA-CTCGGTAATGTAACTCGGACTTT-AGACGGT-----AA--TATTCT-AAATT-CGGAATT-CCTAG---ATT-T-GTAGGCATAG---GTT-A-AGGAGACATCATTTGATTTTA--CTATT-G-ATTTC-AAGTCGG-CAATGATCTTT----TTGAG--TTCCA-T-AATTTTCTGGGTGATTTCATCA---GTG-TTTTTATCTAAGGCAGCCA-G------GTGTTTA--CT-TTTCAT-TTCT--TTAAT-GTCGG-A--CT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCAGCAGCTGTTA---TCAGT--TTC------CCGTA-ATTCGTTTCTAGC--TCGTCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA--TCG-GGTATAA-AT-TCCGGTCTCCAATTCTTCCAGA-TCC-TTT-TGT-A-AA-CT-CTG-TATTTTAGCGCTGGCTTTTTCCAGAAATTCTGATAAC-TTGTGACTTTTA-TGTTCAC-CGGAGGAGACG-CAGGTGAT-ACA------GACAG---GA-ATGTCACAT
gi|1 : AGCTTCTGCTTAATTGATTG-TTTCA-TCGTGTTCTTT-GTGA-ATGG---ATAAT--GGTGA-C-AG-AG---AACCA--AA--CATT--TC-ACGAAGT-TGT--TCTTTGTTTATT-TTCTGAAGA---GAAAAC-CTTGGTAATGAAACGCGGACTTT-AGGCGGT-----AA--TGTTTT-GAATT-CTGAATT-CCTAG---ACC-T-GTAAGTTGAA---GAT-A-AGGAAAAATCATTTGATTTTA--GTATT-G-ATTTC-AAATTGG-AAATAATTTGT----TCGAG--TTTGG-T-CATTTTTTGCGTGATTTCATC-----TG-T----ATTCAGGGCACATA-A------ATGTTGA--TT-TTTCAT-CTCC--TCGAT-GTAAG-A--TT-T-CCGTTCG--TTGACAATGGT-AGTGATCTCTTGG------TGTAAGGCTTCGCCT---TGTT-G-GTCAGCAGCTGTGG---TCAGTGATTC--------GTATATT-ATTTCCAAC--TCGGCCCTCTCGG-TTTGG----ATG-T-CG-GA-AACCA--TTTCTTGATA--TCG-GGGATAA-AT-CCTGGTCTCTAGTTCTTCCAAA-TCT-TTG-TGT-A-AA-CT-TTC-TGTTTTAGCGCT------------AAGTTCTGATATT-TCGTGGCCTTTG-TGTTCTC-CAAATAACGCG-CAGGTAGA-ACA------GATAG---GA-ATATC
gi|16 : cattggtgtgactggaggagatggtacagcttctggtgacgtcattggtgtaactggagatgatacAGCTTCTGCTGACTTCATTG-T
gi|14 : tccttggtttgactggaggcgactatagcttttggtgacttctgtggttttgctggaaggagaatgcaatatcCTTCTGGTGACTTCATCATTGTCGC-CATGTTCTGTGTT-ACAT-G-GCATAATTGGACGA-C-AG-GG---AACCA--AA--CATTGAGC-ATGCAGC-TGAC-TCTTTGTT--TTATTTTCCCTA---GAGAAA-t
gi|15 : ATTG-TGTCGA-CATGTTTTTCAGT-A-ATGGTG---AGT--GATGA-C-AG-AG---AACCA--AA--CATT--GC-ATTGAGC-CGA--TCTTTGTTTATT-GGCCGAGGA---GAGat
gi|6 : GTTCTGTGTT-A-ATAG---ATAAT--GATGA-C-AG-AG---AG-CC--AAG-TAAT--TC-ATTGAGC-TGA--TCTTTATTTATC-TTTTGGGG-------------------CGTAA----AACTT------GGC-----AG--TGTTCT-AAATT-TGGAATT-CCTAG---ATT-T-GTAAGTAGAG---ATT-A-AGGAGACGTTGTTTGATTTTC--GTATT-G-ATTTC-AAGTCAG-CAATAGTTTGT----TTGAG--TTCTG-C-AATTTTCTGAGTTATTTCTTCT---GTA-TTTTTATTTATGGTAGACA-G------GTGTTTG--GT-TTTGAT-TTCA--TGAAT-GTTAG-A--TT-T-CCGCTGG--TTGACAATGGT-TGTGGTCTCTCGG------TGCCAGACTTCTCCT---CGTC-G-GTCGACATCTGTTT---CTAGT--TTT------CTGTA-ATTCGTTTCTAAT--TCGGCTTTCTCGG-TTAGG----ACA-T-CA-GA-CGCCA--TTTTTTCATA--TCG-GGGATAA-AT-TCTTGTTTCTAGTTCTTCCAAA-TCA-TTT-TGC-A-AG-CT-TTG-AGTTTTAGAGGCGATTTTTTCCAGGATATCTAATGTA-TCATGACCTTTA-TGTTCAC-CAGAGGAGATG-CAGGTAGA-ACA------GACAG---GA-ATGTCACATcccacttgtaaagattcaaaata
gi|7 : ATAAC--GATGATA-AG-GA---A--CC--AAA-CATT--CC-ATTGAGT-TGA--TCTTTGTGTATT-TTCCCAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTC-AGACGGT-----AA--TATTAT-AAATT-CGGAAAT-CCTAG---ATT-T-GTAACTAGAG---GTT-A-AGGACAGATCATTTGATTTTA--GTACT-G-ATTTA-AAATCGG-CAATGATATGT----TTGTT--TTCCG-C-GATTCTCTGTTTTATTTCTTCT---GAA-TTTTTATTCAGAGCAGATA-G------GTGTTTG--TT-TTTCAT-TTCT--TGAAT-GGCAG-A--TT-T-CTTTTGG--TTGACAATGGC-GGTGATTTCTCGG------TGTAAGGCTTCTCCT---TGTT-G-GTCTGTAGCTGTTA---TTAGT--TTC------CCGTA-ACTCGTTTCTAAC--CCGTCTCTTTCAG-TTTGG----ATA-T-CC-GA-CGCCA--TTCTTTCATA--ACGTGGGA-AA-AT-GTTGTCCTCTAATTTTCCCAGA-TCC-TTT-TAT-A-AA------------------------TTTTCCTTAAATTCTGATAAT-TTGTGGCCTTCG-TGTTTAC-CTGATTAGACG-CAAGTAAT-ACA------GACA
gi|12 : tggATAAT--GAAGA-A-AATAA---A--CC--AA--CATT--TCCATTGAGC-TAA--TCTTTGTTTATT-TTCCATGGA---GAAAAA-AATGGTAATCTAACTCGGACTTT-AGGCAGC-----GACTTAT--T-AAAAT-CGGAATT-TCTAT---A-C-A-ATAAGTAGAG---TTT-A-GGGAGAC
gi|10 : ttgtaccgccatcgtctgtgttaaaatAT--GATGA-C-AG-AG---AA-CC--AA--AGTT--TTGATCGAGC-TGA--TCTTTGTTTATT-TTCTGAGGA---CAAAAA-CTTGGCAATGCAACTTGAACTTT-AGGCGGT-----AA--TGTTCT-AAATT-CGGAATT-CCTAG---ATT-T-ATAAGTAGAG---GTT-A-AGAAGACATTATTTGAAATTA--GTATT-G-ATATC-AAGTCGG-CAATG---TAT----TTGAG--TTCCT-TAAATTTTTTGTGTGATTCCATC----CTGACTTTTATTCAGGGTAGATAGG------GTGTTTG--TT-TTTCAT-CTCC--TGAAT-GGCAT-ATTTT-T-TTGCTGGTTTTGACAATGGC-GGTGATCTCTCGA------TGTAAGATTTTTCCT---TGTT-G-GTTGGCAGCTGCTA---TCAGT--TTT------CTGTA-ATTTGTTTCTAAC--CCTGCTTTCTTAG-TTTGG----ACA-T-CA-GG-CCACA--TTTCTTCATA--TTG-GGg
gi|4 : tagT--GATGA-C-AG-AG---AAACC--AAATCATT--TC-TTCGAGT-TGACTTCTTTGTTTATT-TGCAGAGAA---GAAAAGGTTTGGTAATTCAACTCG-ATTTT-CG-TGGTCTGAAAG--TGTTATGAAACTACTGAATTACCTAG---ATT-TTGCAGGAGGAG---GTTTACAGGAGACGTCATTTGATTTTAGAC-ATT-GGATTTCCAATTCGGACAATGAAATTCGGTGTTGAG--TTCCG-T-AATTTTCTGTGT-ATTTC-TCTCTTGTG-TTTT-ATTCA--GCGATTA-GATATATGTGTTTG--TTATTTCAT-TCCT--G-AATCGGCGC-A--TTAT-CCGTTGC--GTGACAATGGC-GGTGA--TTTCGG------TGTATAGCTTATCCA---TGTT-G-GTCGGCGACTCTTG---TCAGTA-TTT------CCGTA-CTTCGTTTCCAACT-TCGGCTTTTTCAG-TTGGC----ATATT-CATGA-T-CCA--TTTCTT-ATAC-TCG-AGGGTCA-ATGTCTGCTCTCTAATTC-TCTAAA-TCC--TT-TGTAA-AA-TT-TTG-TGTGTGA-TG-TGAGTTTTTCCAAAACTTCTAGCAAA-TTCGGACCTTTGCTGTTTA--CAGACGACACGCCAG--GAT-AGAACGAAGGACAGTGCAA-AGGTCACATga
gi|2 : tggagtgT--GACGA-ACAG-AGGATA--CCCAAA--CATT--TG-ACGGAGCCTGC--TCTGTGTGGATT-TCT-GAGGACGGGAGAAA-CTTGGTAAGGTAACTCGGACTTTTAGGAGGC-----AAA-TCTTCT-GAACT-CGTA--T-CCTAGGAAATTCT-GTCAGCTTAGAGAGTG-A-GAGAGATATCATT-GATTCTA---TATTTG-CCTTC-A-GCTTT-CAATCA-CTAT----GTGGACCTTTCAGT-AATGG-CTGTGCTATTTCCTC-----TG-GTTT-ATCTAAAGCAGC-A-T------GTGTTTAGTTT-TTTCATGCTCC--GCGAT-GTCGG-A--TT-TTCCGTTGG--TTGACCATGGCAGGTGACCTCGCGGTGAATTTGTAGGA-TTCTCCTCTATGTTGG-GTCA-CATCTCTTAGTGTAAAT--TTCTCCCGTCTGTA-ATTCGTGTGTAGCCGCCGGCTTTCTCCG-TTTGGACCCACA-TCCG-GACCGCCACCTTTC-TCATAGGCCT-GG-ACAGTAT-TCTGGACTCTAGTTCCTCCAAACTCCATTTGTGT-A-AAGCTAATG-AGTTTTAG
gi|5 : --GACGA-C-AG-AA---AGCCA--AA--TATT--TC-ATTCAGC-TGA--TCTTTGTTTATT-TTCCC-GGA---GAAAAA-CTCGGTAATGTAAAAAGGACTCT-CGA-GAT-----AA--TGTTCT-AAACT-CGGAAAT-ACTAG---ATT-T-GTAAGTATAG---GTT-A-AGGATCCATCTTTTGAGTTTA--ATATT-G-CTTTT-AAGTTGA-CAATGATTTGT----TTGAG--TTCGG-T-AATTTTCCGTGTGATTTCTTCT---GTA-TTTTCAT-TCAGGTTGATA-T------GTGTTTG-----TTTCAT-TGTC--TGAAT-GTCGGAA--CT-T-TCGTCGG--TTGACAATGG--GGTGACTTCTCGG------T-TAAGATTTCTCCT---TGTT-G-GTCGGCATCTTTTG---TTAAT--TTC------CCGTA-ATTAGTTTCCAAC--TCAGCTTTCTCAGTTTTTG----ATA-T-TG-GA-CGCCA--TTTCTTCATA--TCT-GGGAAAA-AT-GCTGGTCTCT-ATTCTTCCAGT-TCT-TTT-CGT-A-AA-TT-TTGTTTTTTTAGCGCTGGGTTTTTCCAGAATATCGGATAATATTGTGACCTTTG-TGTTTACTTTGAGGAGACG-CAGAACATAACA------GACAG---GATGTGTCACATgatccattagattcaacaaacactcaacatcaacataatatatgccctcgtgttcttagacgcaagtagaacaaacagaagtaaacgtcacatt
gi|8 : TGTAACTTGGACTTT-GGGCGGT-----AA--TGATCT-AAACT-CGGAATT-CCTAG---ATT-T-GTTAGTAGAG---GTT-A-AGGAAACATCTTTTGATTTTA--GTATT-G-ATTTC-AAGTCGG-CAATGATCTGT----TTGAG--TTCCG-T-TATTTTCTGCGTGATTTCGTCT---GTA-TATTTATTCAGGGTAGATA-G------GTGTTTG--TT-TTTCAT-TTCC--TGAAT-GTCAA-A--CT-T-CCGTCGG--TTGACAATGGC-GGTGACTTCTAGG------TGTAAGATTTCTCCA---TGAT-G-GTCAGCATCTTTTG---TTAAT--TTT------GCGTA-ATTTGTTTCTAAC--TGGGCTTTCTCAG-TTTGT----ATA-T-CG-GA-CGCCA--TTTCTTCATA--TCG-GGGGAAA-AT-CCTTGTTTCTAATTCTTCCAGA-TCT-TTT-TGT-A-AG-TG-ATG-TGTTATATCGCTGAGTTTTTCCAGGAATTCTGACAAC-TTGTGACCTTCG-TGTTTAC-CTGAGGACACG-CAGGTAGA-ACA------AACAG---GA-ATGTCACAT
gi|9 : GGACTCT-CGGAGAT-----AA--TGTTCT-AAACT-CGGAAAT-ACTAG---ATT-T-GTAAGTATAG---GTT-A-AGGATCCATCTTTTGAGTTTA--ATATT-G-CTTTC-AAGTTGA-CAATGATTTGT----TTGAG--TTCGG-T-AATTTTCCGTGTGATTTCTTCT---GTA-TTTTCATTCAGGGTTGATA-T------GTGTTTG--TT-CTTCAT-TTCC--TGAAT-GTCGG-A--CT-T-TCGTCGG--TTGACAATGGC-GGTGACTTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCATCTTTTG---TTAAT--TTC------CCGTA-ATTAGTTTCCAAC--TCAGCTTTCTCAG-TTTTG----ATA-T-TG-GA-CGCCA--TTTCTTCATA--TCT-GGGAAAA-AT-GCTGGTCTCTAATTCTTCCAGT-TCT-TTT-CGT-A-AA-TT-TTG-TTTTTTAGCGCTGGGTTTTTCCAGAATATCGGATATA-TTGTGACCTTTG-TGTTTAC-TTGAGGAGACG-CAGAC-ATAACA------GACAG---GA-GTGTCACAT
gi|11 : ATTTTCTGTGTGATTTCGTCT---GCA-TTTATATTCAGGGTAGATA--------------A--TT-TTTCAT-ATCTCCTGGAT-GTCAG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGATCTCGCGA------TGCA-GATTTCTCCT---TGTT-GTGTTGGCAG-TGTGA---TAAGT----C------CCGTA-ATTCGTTTCTAAA--TCGC--TTCTCAG-TTTGG----ACA-T--G-GA-CGCCA--TTTTATCATA--TCG-GGGATAA-AT-TCTCATCTCTAGTTCTTCCAAA-TCG-TTT-TGT-ATAC-CT-TTT-TA-TTTA--GCTGTGTTTTTCAAGAATATCTGATATA-TTGTGACCTTTG-TGCTTTC-CTGAGGAGATA-CAGGTAGA-GCA------GACAG---GA-ATATCACAT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TCATTGTTTGACTGGAGGAATGATACTTTTGGTGACTTCATTTGTTTGACTGGAGGAATGATACAGCTTCTGCTGACGTCATTTGTTTGACCTGGATAATGATAGCAGCTGCTTTTCTAGGTAGACTTCATTGTCTCGTTCATTGTTC
Unaligned ( gi|17 ): TCAATGATCTGACTGGAAGGGATGATAGTTTCTGGTGATTTCTTGTTTTGACTGGAGGCGCTGTATCCAGCTCCT
Unaligned ( gi|18 ): CTGCTGACTCCATTGTGCCCGCCAACATGTTCTCTCGTGGGTCTTAGTTTAGCTAATCCATTGGAACCA
Alignments
lowQualScore : 33333 222 111111 111111 111111 1111
lowQualScore : 2 2 8 55555 1 1 6 222 55 2 3 55 7 88 55 3 5 3 88 3 1 666 4 0 44 44 99999 3 3 3 0 3 666 3 3 55 3 3 3 0 44 4 4 4 4 55 4 4 4 55 1 4 1 44 3 3 1 55 88 55 55 3 88 3 3 55 3 3 1 55 3 1 000000 3 666 3 3 1 1 1 666 1 88 000000 3 2 88 3 7777 3 3 3 3 55 3 666 1 4 55 3 4 55 4 4 55555 444 8888 4 0 111111 44 4 4 22 4 0 444 4 4 4 1 777 7777 4
lowQualScore : . . . ..... . . . ... .. . . .. . .. .. . . . .. . . ... . . .. .. ..... . . . . . ... . . .. . . . . .. . . . . .. . . . .. . . . .. . . . .. .. .. .. . .. . . .. . . . .. . . ...... . ... . . . . . ... . .. ...... . . .. . .... . . . . .. . ... . . .. . . .. . . ..... ... .... . . ...... .. . . .. . . ... . . . . ... .... .
lowQualScore : 5 8 0 88888 0 0 7 999 00 5 6 00 4 66 00 6 5 6 66 6 5 444 4 7 77 00 11111 6 6 6 3 6 444 6 6 00 6 6 6 3 77 0 0 0 0 55 0 0 0 55 6 0 4 66 6 6 4 00 66 66 00 6 66 6 6 00 6 6 6 00 6 8 555555 3 444 6 6 2 0 0 444 2 66 555555 6 0 66 6 7777 6 6 6 6 00 6 444 0 0 00 0 0 44 0 0 77777 222 5555 1 5 555555 88 0 0 00 0 4 888 0 0 0 0 000 2222 4
consensus : AGCTTCTGNTGACTTCATTGT-GTCG-CC-ATGTTCTNTGTTA-ATGG-G-ATAAT--GACGA-CAGAGAA--CCAAA--CATT--TC-ATCGAGC-TGA--TCTTTG-TTTATTTTCCGAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTT-AGGCGGT-----AA-TGTTCT-AAACT-CGGAATT-CCTAG---ATT-T-GTAAG--TAGAGGTT-A-AG-GAGACATCATTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TT-TG-T-TTGAG--TTCCGT-AATTTTCTGTGTGATTTC-NT-C-TGTATTTTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCGG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCANCTGT---TGTCAGT--TTC------CCGTA-ATTCGTTTCTAAC--TCGGCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGANAA-AT-TCTGGTCTCTAGTTCTTCCAGA-TCC-TTT-TGT-AAACTT--TG-TGTTTTAG----CGCTGAGTTTTTCCAG------AANNTCTG-AT-ANNTTGTGACCTTTG-TGTTTAC-CTGAGGAGACG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
Reference ( family-265 ) : AGCTTCTGCTGACTTCATCGT-GTCG-C--GTGTTCTNTGNTA-ATGG-G-ATAAT--GACGA-CAGAGAA--CCCAA--CATT--TC-ATCGAGC-TGA--TCTTTG-TTTATTTTCCGAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTT-AGGCGGT-----AA-TGTTCT-AAACT-CGGAATT-CCTAG---ATT-T-GTAAG--TAGAGGTT-A-AG-GAGACATCATTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TT-TG-T-TTGAG--TTCCGT-AATTTTCTGTGTGATTTC-NT-C-TGTATTTTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCGG-A--TT-T-CCGTCGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGACTTCTCCT---TGTT-G-GTCGGCANCTNT---TGTTAGT--TTC------CCGTA-ATTCGTTTCTAAC--TCGGCTTTCTCAG-TTTGG----ATA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGANAA-AT-NCTGGTCTCTAGTTCTTCCAGA-TCC-TTT-TGT-AAACTT--TG-TGTTTTAG----CGCTGAGTTTTTCCAG------AANNTCTG-AT-ANNTTGTGACCTTTG-TGTTTAC-CTGAGGAGACG-CAG-G-TAGNAC---AGACAG----GA-ATGTCACAT
gi|1 : AGCTTCTGCTTAATTGATTGT-TTCATC--GTGTTCTTTGTGA-ATGG---ATAAT--GGTGA-CAGAGAA--CCAAA--CATT--TC-ACGAAGT-TGT--TCTTTG-TTTATTTTCTGAAGA---GAAAAC-CTTGGTAATGAAACGCGGACTTT-AGGCGGT-----AA-TGTTTT-GAATT-CTGAATT-CCTAG---ACC-T-GTAAG--TTGAAGAT-A-AG-GAAAAATCATTTGATTTTAG-TATT-G-ATTTC-AAATTGG-AAATAA--TT-TG-T-TCGAG--TTTGGT-CATTTTTTGCGTGATTTC-AT-C-TGTATT------CAGGG--CAC--ATA-AATGTTGA--TT-TTTCAT--CTCCTCGAT-GTAAG-A--TT-T-CCGTTCG--TTGACAATGGT-AGTGATCTCTTGG------TGTAAGGCTTCGCCT---TGTT-G-GTCAGCAGCTGT---GGTCAGTGATTC--------GTATATT-ATTTCCAAC--TCGGCCCTCTCGG-TTTGG----ATG-T-CG-GA-AACCA--TTTCTTGATA-TCGG---GGATAA-AT-CCTGGTCTCTAGTTCTTCCAAA-TCT-TTG-TGT-AAACTT--TC-TGTTTTAG----CGCTAAGT------------------TCTG-AT-ATTTCGTGGCCTTTG-TGTTCTC-CAAATAACGCG-CAG-G-TAGAAC---AGATAG----GA-ATATC
gi|10 : cattggtgtgactggaggagatggtacagcttctggtgacgtcattggtgtaactggagatgatacAT--GATGA-CAGAGAA--CCAAA--GTTT--TG-ATCGAGC-TGA--TCTTTG-TTTATTTTCTGAGGA---CAAAAA-CTTGGCAATGCAACTTGAACTTT-AGGCGGT-----AA-TGTTCT-AAATT-CGGAATT-CCTAG---ATT-T-ATAAG--TAGAGGTT-A-AG-AAGACATTATTTGAAATTAG-TATT-G-ATATC-AAGTCGG-CAATG------TA-T-TTGAG--TTCCTTAAATTTTTTGTGTGATTCC-ATCC-TG-ACTTTTATTCAGGG--TAG--ATAGGGTGTTTG--TT-TTTCAT--CTCCTGAAT-GGCAT-ATTTT-T-TTGCTGGTTTTGACAATGGC-GGTGATCTCTCGA------TGTAAGATTTTTCCT---TGTT-G-GTTGGCAGCTGC---TATCAGT--TTT------CTGTA-ATTTGTTTCTAAC--CCTGCTTTCTTAG-TTTGG----ACA-T-CA-GG-CCACA--TTTCTTCATA-TTGG---GGA
gi|11 : tagATTTTCTGTGTGATTTC-GT-C-TGCATTTATATTCAGGG--TAG--ATA-A---------TT-TTTCATATCTCCTGGAT-GTCAG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGATCTCGCGA------TGCA-GATTTCTCCT---TGTT-GTGTTGGCAG-TGT---GATAAGT----C------CCGTA-ATTCGTTTCTAAA--TCG--CTTCTCAG-TTTGG----ACA-T--G-GA-CGCCA--TTTTATCATA-TCGG---GGATAA-AT-TCTCATCTCTAGTTCTTCCAAA-TCG-TTT-TGT-ATACCT--TT-TTATTTAG----C--TGTGTTTTTCAAG------AATATCTG-AT-ATATTGTGACCTTTG-TGCTTTC-CTGAGGAGATA-CAG-G-TAGAGC---AGACAG----GA-ATATCACAT
gi|12 : TCTGTGTTA-A-AA-T-ATAAT--GAAGA--AAATAA--ACCAA--CATT--TCCATTGAGC-TAA--TCTTTG-TTTATTTTCCATGGA---GAAAAA-AATGGTAATCTAACTCGGACTTT-AGGCAGC-----GA-CTTATT-AAAAT-CGGAATT-TCTAT---A-C-A-ATAAG--TAGAGTTT-A-GG-GAGAC
gi|14 : ttgtaccgccatcgCTTCTGGTGACTTCATCATTGTCG-CC-ATGTTCTGTGTTACATGG-C-ATAATTGGACGA-CAGGGAA--CCAAA--CATTGAGC-ATGCAGC-TGAC-TCTTTGTTTTATTTTCCCTAGA---GAAAAg
gi|15 : ATTGT-GTCGAC--ATGTTTTTCAGTA-ATGGTG-A--GT--GATGA-CAGAGAA--CCAAA--CATT--GC-ATTGAGC-CGA--TCTTTG-TTTATTGGCCGAGGA---GAt
gi|16 : AGCTTCTGCTGACTTCATTGT-gcccacttgtaaagattcaaaata
gi|2 : tccttggtttgactggaggcgactatagcttttggtgacttctgtggttttgctggaaggagaatgcaatatcT--GACGAACAGAGGATACCCAAA-CATT--TG-ACGGAGCCTGC--TCTGTG-TGGATTT-CTGAGGACGGGAGAAA-CTTGGTAAGGTAACTCGGACTTTTAGGAGGC-----AAATCTTCT-GAACT-CGTA--T-CCTAGGAAATTCT-GTCAGCTTAGAGAGT-G-AGAGAGATATCATT-GATTCTA--TATTTG-CCTTC-A-GCTTT-CAATCA--CTATG-T-G-GACCTTTCAGT-AATGG-CTGTGCTATTTC-CT-C-TGG---TTTATCTAAAG--CAGC-AT---GTGTTTAGTTT-TTTCATG-CTCCGCGAT-GTCGG-A--TT-TTCCGTTGG--TTGACCATGGCAGGTGACCTCGCGGTGAATTTGTAGGA-TTCTCCTCTATGTTGG-GTC-ACATCTCTTAGTGTAAAT--TTCTCCCGTCTGTA-ATTCGTGTGTAGCCGCCGGCTTTCTCCG-TTTGGACCCACA-TCCG-GACCGCCACCTTTC-TCATA---GGCCTGGACAGTAT-TCTGGACTCTAGTTCCTCCAAACTCCATTTGTGT-AAAGCTAATG-AGTTTTAGGATCCATT-AGATTCAACAAACACTCAACATCAACAT-AATATATG-CCCTCG-TGTT--C-TT----AGACG-CAA-G-TAGAAC---AAACAGAAGTAA-ACGTCACATt
gi|3 : AGCTTCTGGTGACTTCATTGT-GCCA-CTCATGTTCTTTTGTA-ATGG-GCATAAT--GATGA-AAGAGA----CTAA--CATT--TC-ATTGAGT-TGA--TCTTTG-TTAATTTTTTGAGGA---GAGAAA-CTCGGTAATGTAACTCGGACTTT-AGACGGT-----AA-TATTCT-AAATT-CGGAATT-CCTAG---ATT-T-GTAGG--CATAGGTT-A-AG-GAGACATCATTTGATTTTAC-TATT-G-ATTTC-AAGTCGG-CAATGA--TC-TT-T-TTGAG--TTCCAT-AATTTTCTGGGTGATTTC-AT-C-AGTGTTTTTATCTAAGG--CAG--CCA-GGTGTTTA--CT-TTTCAT--TTCTTTAAT-GTCGG-A--CT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCAGCAGCTGT---TATCAGT--TTC------CCGTA-ATTCGTTTCTAGC--TCGTCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GTATAA-AT-TCCGGTCTCCAATTCTTCCAGA-TCC-TTT-TGT-AAACTC--TG-TATTTTAG----CGCTGGCTTTTTCCAG------AAATTCTG-AT-AACTTGTGACTTTTA-TGTTCAC-CGGAGGAGACG-CAG-G-TGATAC---AGACAG----GA-ATGTCACATt
gi|4 : T--GATGA-CAGAGAA--ACCAAATCATT--TC-TTCGAGT-TGACTTCTTTG-TTTATTTGCAGAGAA---GAAAAGGTTTGGTAATTCAACTCG-ATTTT-CG-TGGTCTGAAAG-TGTTATGAAACTACTGAATTACCTAG---ATT-TTGCAGG--AGGAGGTTTACAG-GAGACGTCATTTGATTTTAGACATT-GGATTTCCAATTCGGACAATGAAATT-CGGTGTTGAG--TTCCGT-AATTTTCTGTGT-ATTTCTCT-CTTGTG-TTTTATTCAGCGATTAGATATA-TGTGTTTG--TTATTTCA---TTCCTGAATCGGCGC-A--TTAT-CCGTTGC--GTGACAATGGC-GGTGA--TTTCGG------TGTATAGCTTATCCA---TGTT-G-GTCGGCGACTCT---TGTCAGTA-TTT------CCGTA-CTTCGTTTCCAACT-TCGGCTTTTTCAG-TTGGC----ATATT-CATGA-T-CCA--TTTCTT-ATACTCGA---GGGTCA-ATGTCTGCTCTCTAATTC-TCTAAA-TCC--TT-TGTAAAATTT--TG-TGTGTGA-----TG-TGAGTTTTTCCAA------AACTTCTA-GC-AAATTCGGACCTTTGCTGTTTAC-A-GACGACACGCCAG-GATAGAACGAAGGACAGTGC-AA-AGGTCACAT
gi|5 : tggagtg--GACGA-CAGAAAG--CCAAA--TATT--TC-ATTCAGC-TGA--TCTTTG-TTTATTTTCCC-GGA---GAAAAA-CTCGGTAATGTAAAAAGGACTCT-CGA-GAT-----AA-TGTTCT-AAACT-CGGAAAT-ACTAG---ATT-T-GTAAG--TATAGGTT-A-AG-GATCCATCTTTTGAGTTTAA-TATT-G-CTTTT-AAGTTGA-CAATGA--TT-TG-T-TTGAG--TTCGGT-AATTTTCCGTGTGATTTC-TT-C-TGTATTTTCATTCAGGT--T-G--ATA-TGTGTTTG-----TTTCAT--TGTCTGAAT-GTCGGAA--CT-T-TCGTCGG--TTGACAATGG--GGTGACTTCTCGG------T-TAAGATTTCTCCT---TGTT-G-GTCGGCATCTTT---TGTTAAT--TTC------CCGTA-ATTAGTTTCCAAC--TCAGCTTTCTCAGTTTTTG----ATA-T-TG-GA-CGCCA--TTTCTTCATA-TCTG---GGAAAA-AT-GCTGGTCTCTA-TTCTTCCAGT-TCT-TTT-CGT-AAATTT--TGTTTTTTTAG----CGCTGGGTTTTTCCAG------AATATCGG-ATAATATTGTGACCTTTG-TGTTTACTTTGAGGAGACG-CAGAA-CATAAC---AGACAG----GATGTGTCACAT
gi|6 : GTTCTGTGTTA-ATAG---ATAAT--GATGA-CAGAGAG--CCAAG--TAAT--TC-ATTGAGC-TGA--TCTTTA-TTTATCTTTTGGGGC---GTAAAA-CTTGGCAGTGT-------------------------------TCT-AAATT-TGGAATT-CCTAG---ATT-T-GTAAG--TAGAGATT-A-AG-GAGACGTTGTTTGATTTTCG-TATT-G-ATTTC-AAGTCAG-CAATAG--TT-TG-T-TTGAG--TTCTGC-AATTTTCTGAGTTATTTC-TT-C-TGTATTTTTATTTATGG--TAG--ACA-GGTGTTTG--GT-TTTGAT--TTCATGAAT-GTTAG-A--TT-T-CCGCTGG--TTGACAATGGT-TGTGGTCTCTCGG------TGCCAGACTTCTCCT---CGTC-G-GTCGACATCTGT---TTCTAGT--TTT------CTGTA-ATTCGTTTCTAAT--TCGGCTTTCTCGG-TTAGG----ACA-T-CA-GA-CGCCA--TTTTTTCATA-TCGG---GGATAA-AT-TCTTGTTTCTAGTTCTTCCAAA-TCA-TTT-TGC-AAGCTT--TG-AGTTTTAG----AGGCGATTTTTTCCAG------GATATCTA-AT-GTATCATGACCTTTA-TGTTCAC-CAGAGGAGATG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
gi|7 : G-G-ATAAC--GATGA-TAAGGAA--CCAAA--CATT--CC-ATTGAGT-TGA--TCTTTG-TGTATTTTCCCAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTC-AGACGGT-----AA-TATTAT-AAATT-CGGAAAT-CCTAG---ATT-T-GTAAC--TAGAGGTT-A-AG-GACAGATCATTTGATTTTAG-TACT-G-ATTTA-AAATCGG-CAATGA--TA-TG-T-TTGTT--TTCCGC-GATTCTCTGTTTTATTTC-TT-C-TGAATTTTTATTCAGAG--CAG--ATA-GGTGTTTG--TT-TTTCAT--TTCTTGAAT-GGCAG-A--TT-T-CTTTTGG--TTGACAATGGC-GGTGATTTCTCGG------TGTAAGGCTTCTCCT---TGTT-G-GTCTGTAGCTGT---TATTAGT--TTC------CCGTA-ACTCGTTTCTAAC--CCGTCTCTTTCAG-TTTGG----ATA-T-CC-GA-CGCCA--TTCTTTCATA-ACGT---GGGAAA-AT-GTTGTCCTCTAATTTTCCCAGA-TCC-TTT-TAT-AAA----------------------------TTTTCCTT------AAATTCTG-AT-AATTTGTGGCCTTCG-TGTTTAC-CTGATTAGACG-CAA-G-TAATAC---AGACA
gi|8 : tTGTAACTTGGACTTT-GGGCGGT-----AA-TGATCT-AAACT-CGGAATT-CCTAG---ATT-T-GTTAG--TAGAGGTT-A-AG-GAAACATCTTTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TC-TG-T-TTGAG--TTCCGT-TATTTTCTGCGTGATTTC-GT-C-TGTATATTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCAA-A--CT-T-CCGTCGG--TTGACAATGGC-GGTGACTTCTAGG------TGTAAGATTTCTCCA---TGAT-G-GTCAGCATCTTT---TGTTAAT--TTT------GCGTA-ATTTGTTTCTAAC--TGGGCTTTCTCAG-TTTGT----ATA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGGAAA-AT-CCTTGTTTCTAATTCTTCCAGA-TCT-TTT-TGT-AAGTGA--TG-TGTTATAT----CGCTGAGTTTTTCCAG------GAATTCTG-AC-AACTTGTGACCTTCG-TGTTTAC-CTGAGGACACG-CAG-G-TAGAAC---AAACAG----GA-ATGTCACAT
gi|9 : GGACTCT-CGGAGAT-----AA-TGTTCT-AAACT-CGGAAAT-ACTAG---ATT-T-GTAAG--TATAGGTT-A-AG-GATCCATCTTTTGAGTTTAA-TATT-G-CTTTC-AAGTTGA-CAATGA--TT-TG-T-TTGAG--TTCGGT-AATTTTCCGTGTGATTTC-TT-C-TGTATTTTCATTCAGGG--TTG--ATA-TGTGTTTG--TT-CTTCAT--TTCCTGAAT-GTCGG-A--CT-T-TCGTCGG--TTGACAATGGC-GGTGACTTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCATCTTT---TGTTAAT--TTC------CCGTA-ATTAGTTTCCAAC--TCAGCTTTCTCAG-TTTTG----ATA-T-TG-GA-CGCCA--TTTCTTCATA-TCTG---GGAAAA-AT-GCTGGTCTCTAATTCTTCCAGT-TCT-TTT-CGT-AAATTT--TG-TTTTTTAG----CGCTGGGTTTTTCCAG------AATATCGG-AT-ATATTGTGACCTTTG-TGTTTAC-TTGAGGAGACG-CAG-A-CATAAC---AGACAG----GA-GTGTCACAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCATTGTTTGACTGGAGGAATGATACTTTTGGTGACTTCATTTGTTTGACTGGAGGAATGATACAGCTTCTGCTGACGTCATTTGTTTGACCTGGATAATGATAGCAGCTGCTTTTCTAGGTAGACTTCATTGTCTCGTTCATTGTTC
Unaligned ( gi|17 ): TCAATGATCTGACTGGAAGGGATGATAGTTTCTGGTGATTTCTTGTTTTGACTGGAGGCGCTGTATCCAGCTCCT
Unaligned ( gi|18 ): CTGCTGACTCCATTGTGCCCGCCAACATGTTCTCTCGTGGGTCTTAGTTTAGCTAATCCATTGGAACCA
Alignments
lowQualScore : 111 222 111 111111 111111 111111 1111
lowQualScore : 1 999 888 1 6 222 55 2 3 000 3 55 3 5 3 88 3 1 666 4 0 44 44 99999 3 3 3 0 3 666 3 3 55 3 3 3 0 44 4 4 4 4 55 4 4 4 55 1 4 1 44 3 3 1 55 88 55 55 3 88 3 3 55 3 3 55 3 1 000000 0 666 3 3 1 1 1 666 1 88 000000 3 2 88 3 7777 3 3 3 3 55 3 666 1 4 55 3 4 55 4 4 55555 444 8888 4 0 111111 44 4 4 22 4 0 444 4 4 4 777 7777 4
lowQualScore : . ... ... . . ... .. . . ... . .. . . . .. . . ... . . .. .. ..... . . . . . ... . . .. . . . . .. . . . . .. . . . .. . . . .. . . . .. .. .. .. . .. . . .. . . .. . . ...... . ... . . . . . ... . .. ...... . . .. . .... . . . . .. . ... . . .. . . .. . . ..... ... .... . . ...... .. . . .. . . ... . . . ... .... .
lowQualScore : 0 222 333 0 7 999 00 5 6 000 6 00 6 5 6 66 6 5 444 4 7 77 00 11111 6 6 6 3 6 444 6 6 00 6 6 6 3 77 0 0 0 0 55 0 0 0 55 6 0 4 66 6 6 4 00 66 66 00 6 66 6 6 00 6 6 00 6 8 555555 9 444 6 6 2 0 4 444 8 66 555555 6 0 66 6 7777 6 6 6 6 00 6 444 0 0 22 0 0 44 0 0 77777 222 5555 1 5 555555 88 0 0 00 0 4 888 0 0 0 000 2222 4
consensus : AGCTTCTGCTGACTTCATTGT-G-CCGC---CATGTTCTNTGTTA-ATGG-G-ATAAT--GACGA-CAGAGAA---CCAAA-CATT--TC-ATCGAGC-TGA--TCTTTG-TTTATTTTCCGAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTT-AGGCGGT-----AA-TGTTCT-AAACT-CGGAATT-CCTAG---ATT-T-GTAAG--TAGAGGTT-A-AG-GAGACATCATTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TT-TG-T-TTGAG--TTCCGT-AATTTTCTGTGTGATTTC-NT-C-TGTATTTTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCGG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCANCTGT---TGTCAGT--TTC------CCGTA-ATTCGTTTCTAAC--TCGGCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGANAA-AT-TCTGGTCTCTAGTTCTTCCAGA-TCC-TTT-TGT-AAACTT--TG-TGTTTTAG----CGCTGAGTTTTTCCAG------AANNTCTG-AT-ANNTTGTGACCTTTG-TGTTTAC-CTGAGGAGACG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
Reference ( family-265 ) : AGCTTCTGNTGACTTCATTGT-G-TCGC---CATGTTCTNTGTTA-ATGG-G-ATAAT--GACGA-CAGAGAA---CCAAA-CATT--TC-ATCGAGC-TGA--TCTTTG-TTTATTTTCCGAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTT-AGGCGGT-----AA-TGTTCT-AAACT-CGGAATT-CCTAG---ATT-T-GTAAG--TAGAGGTT-A-AG-GAGACATCATTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TT-TG-T-TTGAG--TTCCGT-AATTTTCTGTGTGATTTC-NT-C-TGTATTTTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCGG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCANCTGT---TGTCAGT--TTC------CCGTA-ATTCGTTTCTAAC--TCGGCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGANAA-AT-TCTGGTCTCTAGTTCTTCCAGA-TCC-TTT-TGT-AAACTT--TG-TGTTTTAG----CGCTGAGTTTTTCCAG------AANNTCTG-AT-ANNTTGTGACCTTTG-TGTTTAC-CTGAGGAGACG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
gi|1 : AGCTTCTGCTTAATTGATTGT-T-TCAT---CGTGTTCTTTGTGA-ATGG---ATAAT--GGTGA-CAGAGAA---CCAAA-CATT--TC-ACGAAGT-TGT--TCTTTG-TTTATTTTCTGAAGA---GAAAAC-CTTGGTAATGAAACGCGGACTTT-AGGCGGT-----AA-TGTTTT-GAATT-CTGAATT-CCTAG---ACC-T-GTAAG--TTGAAGAT-A-AG-GAAAAATCATTTGATTTTAG-TATT-G-ATTTC-AAATTGG-AAATAA--TT-TG-T-TCGAG--TTTGGT-CATTTTTTGCGTGATTTC-AT-C-TGTATT------CAGGG--CAC--ATA-AATGTTGA--TT-TTTCAT--CTCCTCGAT-GTAAG-A--TT-T-CCGTTCG--TTGACAATGGT-AGTGATCTCTTGG------TGTAAGGCTTCGCCT---TGTT-G-GTCAGCAGCTGT---GGTCAGTGATTC--------GTATATT-ATTTCCAAC--TCGGCCCTCTCGG-TTTGG----ATG-T-CG-GA-AACCA--TTTCTTGATA-TCGG---GGATAA-AT-CCTGGTCTCTAGTTCTTCCAAA-TCT-TTG-TGT-AAACTT--TC-TGTTTTAG----CGCTAAGT------------------TCTG-AT-ATTTCGTGGCCTTTG-TGTTCTC-CAAATAACGCG-CAG-G-TAGAAC---AGATAG----GA-ATATC
gi|10 : cattggtgtgactggaggagatggtacagcttctggtgacgtcattggtgtaactggagatgatacAT--GATGA-CAGAGAA---CCAAA-GTTT--TG-ATCGAGC-TGA--TCTTTG-TTTATTTTCTGAGGA---CAAAAA-CTTGGCAATGCAACTTGAACTTT-AGGCGGT-----AA-TGTTCT-AAATT-CGGAATT-CCTAG---ATT-T-ATAAG--TAGAGGTT-A-AG-AAGACATTATTTGAAATTAG-TATT-G-ATATC-AAGTCGG-CAATG------TA-T-TTGAG--TTCCTTAAATTTTTTGTGTGATTCC-ATCC-TG-ACTTTTATTCAGGG--TAG--ATAGGGTGTTTG--TT-TTTCAT--CTCCTGAAT-GGCAT-ATTTT-T-TTGCTGGTTTTGACAATGGC-GGTGATCTCTCGA------TGTAAGATTTTTCCT---TGTT-G-GTTGGCAGCTGC---TATCAGT--TTT------CTGTA-ATTTGTTTCTAAC--CCTGCTTTCTTAG-TTTGG----ACA-T-CA-GG-CCACA--TTTCTTCATA-TTGG---GGA
gi|11 : tagATTTTCTGTGTGATTTC-GT-C-TGCATTTATATTCAGGG--TAG--ATA-A---------TT-TTTCATATCTCCTGGAT-GTCAG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGATCTCGCGA------TGCA-GATTTCTCCT---TGTT-GTGTTGGCAG-TGT---GATAAGT----C------CCGTA-ATTCGTTTCTAAA--TCG--CTTCTCAG-TTTGG----ACA-T--G-GA-CGCCA--TTTTATCATA-TCGG---GGATAA-AT-TCTCATCTCTAGTTCTTCCAAA-TCG-TTT-TGT-ATACCT--TT-TTATTTAG----C--TGTGTTTTTCAAG------AATATCTG-AT-ATATTGTGACCTTTG-TGCTTTC-CTGAGGAGATA-CAG-G-TAGAGC---AGACAG----GA-ATATCACAT
gi|12 : TTGT-A-CCGC---CATCGTCTGTGTTA-A-AA-T-ATAAT--GAAGA-AAATAAA---CCAA--CATT--TCCATTGAGC-TAA--TCTTTG-TTTATTTTCCATGGA---GAAAAA-AATGGTAATCTAACTCGGACTTT-AGGCAGC-----GA-CTTATT-AAAAT-CGGAATT-TCTAT---A-C-A-ATAAG--TAGAGTTT-A-GG-GAGAC
gi|14 : CTTCTGGTGACTTCATCATTG-TCGC---CATGTTCTGTGTTACATGG-C-ATAATTGGACGA-CAGGGAA---CCAAA-CATTGAGC-ATGCAGC-TGAC-TCTTTGTTTTATTTTCCCTAGA---GAAAAg
gi|15 : ATTGT-G-TCGA---CATGTTTTTCAGTA-ATGGTG-A--GT--GATGA-CAGAGAA---CCAAA-CATT--GC-ATTGAGC-CGA--TCTTTG-TTTATTGGCCGAGGA---GAt
gi|16 : AGCTTCTGCTGACTTCATTGT-gcccacttgtaaagattcaaaata
gi|18 : tccttggtttgactggaggcgactatagcttttggtgacttctgtggttttgctggaaggagaatgcaatatcCTGCTGACTCCATTGT-GCCCGCCAACATGTTCTCTt
gi|2 : T--GACGAACAGAGGATACCCAAA-CATT--TG-ACGGAGCCTGC--TCTGTG-TGGATTT-CTGAGGACGGGAGAAA-CTTGGTAAGGTAACTCGGACTTTTAGGAGGC-----AAATCTTCT-GAACT-CGTA--T-CCTAGGAAATTCT-GTCAGCTTAGAGAGT-G-AGAGAGATATCATT-GATTCTA--TATTTG-CCTTC-A-GCTTT-CAATCA--CTATG-T-G-GACCTTTCAGT-AATGG-CTGTGCTATTTC-CT-C-TGG---TTTATCTAAAG--CAGC-AT---GTGTTTAGTTT-TTTCATG-CTCCGCGAT-GTCGG-A--TT-TTCCGTTGG--TTGACCATGGCAGGTGACCTCGCGGTGAATTTGTAGGA-TTCTCCTCTATGTTGG-GTC-ACATCTCTTAGTGTAAAT--TTCTCCCGTCTGTA-ATTCGTGTGTAGCCGCCGGCTTTCTCCG-TTTGGACCCACA-TCCG-GACCGCCACCTTTC-TCATA---GGCCTGGACAGTAT-TCTGGACTCTAGTTCCTCCAAACTCCATTTGTGT-AAAGCTAATG-AGTTTTAGGATCCATT-AGATTCAACAAACACTCAACATCAACAT-AATATATG-CCCTCG-TGTT--C-TT----AGACG-CAA-G-TAGAAC---AAACAGAAGTAA-ACGTCACATcgtgggtcttagtttagctaatccattggaacca
gi|3 : AGCTTCTGGTGACTTCATTGT-G-CCACT--CATGTTCTTTTGTA-ATGG-GCATAAT--GATGA-AAGAGA-----CTAA-CATT--TC-ATTGAGT-TGA--TCTTTG-TTAATTTTTTGAGGA---GAGAAA-CTCGGTAATGTAACTCGGACTTT-AGACGGT-----AA-TATTCT-AAATT-CGGAATT-CCTAG---ATT-T-GTAGG--CATAGGTT-A-AG-GAGACATCATTTGATTTTAC-TATT-G-ATTTC-AAGTCGG-CAATGA--TC-TT-T-TTGAG--TTCCAT-AATTTTCTGGGTGATTTC-AT-C-AGTGTTTTTATCTAAGG--CAG--CCA-GGTGTTTA--CT-TTTCAT--TTCTTTAAT-GTCGG-A--CT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCAGCAGCTGT---TATCAGT--TTC------CCGTA-ATTCGTTTCTAGC--TCGTCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GTATAA-AT-TCCGGTCTCCAATTCTTCCAGA-TCC-TTT-TGT-AAACTC--TG-TATTTTAG----CGCTGGCTTTTTCCAG------AAATTCTG-AT-AACTTGTGACTTTTA-TGTTCAC-CGGAGGAGACG-CAG-G-TGATAC---AGACAG----GA-ATGTCACATt
gi|4 : T--GATGA-CAGAGAAA--CCAAATCATT--TC-TTCGAGT-TGACTTCTTTG-TTTATTTGCAGAGAA---GAAAAGGTTTGGTAATTCAACTCG-ATTTT-CG-TGGTCTGAAAG-TGTTATGAAACTACTGAATTACCTAG---ATT-TTGCAGG--AGGAGGTTTACAG-GAGACGTCATTTGATTTTAGACATT-GGATTTCCAATTCGGACAATGAAATT-CGGTGTTGAG--TTCCGT-AATTTTCTGTGT-ATTTCTCT-CTTGTG-TTTTATTCAGCGATTAGATATA-TGTGTTTG--TTATTTCA---TTCCTGAATCGGCGC-A--TTAT-CCGTTGC--GTGACAATGGC-GGTGA--TTTCGG------TGTATAGCTTATCCA---TGTT-G-GTCGGCGACTCT---TGTCAGTA-TTT------CCGTA-CTTCGTTTCCAACT-TCGGCTTTTTCAG-TTGGC----ATATT-CATGA-T-CCA--TTTCTT-ATACTCGA---GGGTCA-ATGTCTGCTCTCTAATTC-TCTAAA-TCC--TT-TGTAAAATTT--TG-TGTGTGA-----TG-TGAGTTTTTCCAA------AACTTCTA-GC-AAATTCGGACCTTTGCTGTTTAC-A-GACGACACGCCAG-GATAGAACGAAGGACAGTGC-AA-AGGTCACAT
gi|5 : tggagtg--GACGA-CAGAAAG---CCAAA-TATT--TC-ATTCAGC-TGA--TCTTTG-TTTATTTTCCC-GGA---GAAAAA-CTCGGTAATGTAAAAAGGACTCT-CGA-GAT-----AA-TGTTCT-AAACT-CGGAAAT-ACTAG---ATT-T-GTAAG--TATAGGTT-A-AG-GATCCATCTTTTGAGTTTAA-TATT-G-CTTTT-AAGTTGA-CAATGA--TT-TG-T-TTGAG--TTCGGT-AATTTTCCGTGTGATTTC-TT-C-TGTATTTTCATTCAGGT--T-G--ATA-TGTGTTTG-----TTTCAT--TGTCTGAAT-GTCGGAA--CT-T-TCGTCGG--TTGACAATGG--GGTGACTTCTCGG------T-TAAGATTTCTCCT---TGTT-G-GTCGGCATCTTT---TGTTAAT--TTC------CCGTA-ATTAGTTTCCAAC--TCAGCTTTCTCAGTTTTTG----ATA-T-TG-GA-CGCCA--TTTCTTCATA-TCTG---GGAAAA-AT-GCTGGTCTCTA-TTCTTCCAGT-TCT-TTT-CGT-AAATTT--TGTTTTTTTAG----CGCTGGGTTTTTCCAG------AATATCGG-ATAATATTGTGACCTTTG-TGTTTACTTTGAGGAGACG-CAGAA-CATAAC---AGACAG----GATGTGTCACAT
gi|6 : GTTCTGTGTTA-ATAG---ATAAT--GATGA-CAGAGAG---CCAAG-TAAT--TC-ATTGAGC-TGA--TCTTTA-TTTATCTTTTGGGGC---GTAAAA-CTTGGCAGTGT-------------------------------TCT-AAATT-TGGAATT-CCTAG---ATT-T-GTAAG--TAGAGATT-A-AG-GAGACGTTGTTTGATTTTCG-TATT-G-ATTTC-AAGTCAG-CAATAG--TT-TG-T-TTGAG--TTCTGC-AATTTTCTGAGTTATTTC-TT-C-TGTATTTTTATTTATGG--TAG--ACA-GGTGTTTG--GT-TTTGAT--TTCATGAAT-GTTAG-A--TT-T-CCGCTGG--TTGACAATGGT-TGTGGTCTCTCGG------TGCCAGACTTCTCCT---CGTC-G-GTCGACATCTGT---TTCTAGT--TTT------CTGTA-ATTCGTTTCTAAT--TCGGCTTTCTCGG-TTAGG----ACA-T-CA-GA-CGCCA--TTTTTTCATA-TCGG---GGATAA-AT-TCTTGTTTCTAGTTCTTCCAAA-TCA-TTT-TGC-AAGCTT--TG-AGTTTTAG----AGGCGATTTTTTCCAG------GATATCTA-AT-GTATCATGACCTTTA-TGTTCAC-CAGAGGAGATG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
gi|7 : G-G-ATAAC--GATGA-TAAGGAA---CCAAA-CATT--CC-ATTGAGT-TGA--TCTTTG-TGTATTTTCCCAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTC-AGACGGT-----AA-TATTAT-AAATT-CGGAAAT-CCTAG---ATT-T-GTAAC--TAGAGGTT-A-AG-GACAGATCATTTGATTTTAG-TACT-G-ATTTA-AAATCGG-CAATGA--TA-TG-T-TTGTT--TTCCGC-GATTCTCTGTTTTATTTC-TT-C-TGAATTTTTATTCAGAG--CAG--ATA-GGTGTTTG--TT-TTTCAT--TTCTTGAAT-GGCAG-A--TT-T-CTTTTGG--TTGACAATGGC-GGTGATTTCTCGG------TGTAAGGCTTCTCCT---TGTT-G-GTCTGTAGCTGT---TATTAGT--TTC------CCGTA-ACTCGTTTCTAAC--CCGTCTCTTTCAG-TTTGG----ATA-T-CC-GA-CGCCA--TTCTTTCATA-ACGT---GGGAAA-AT-GTTGTCCTCTAATTTTCCCAGA-TCC-TTT-TAT-AAA----------------------------TTTTCCTT------AAATTCTG-AT-AATTTGTGGCCTTCG-TGTTTAC-CTGATTAGACG-CAA-G-TAATAC---AGACA
gi|8 : tTGTAACTTGGACTTT-GGGCGGT-----AA-TGATCT-AAACT-CGGAATT-CCTAG---ATT-T-GTTAG--TAGAGGTT-A-AG-GAAACATCTTTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TC-TG-T-TTGAG--TTCCGT-TATTTTCTGCGTGATTTC-GT-C-TGTATATTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCAA-A--CT-T-CCGTCGG--TTGACAATGGC-GGTGACTTCTAGG------TGTAAGATTTCTCCA---TGAT-G-GTCAGCATCTTT---TGTTAAT--TTT------GCGTA-ATTTGTTTCTAAC--TGGGCTTTCTCAG-TTTGT----ATA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGGAAA-AT-CCTTGTTTCTAATTCTTCCAGA-TCT-TTT-TGT-AAGTGA--TG-TGTTATAT----CGCTGAGTTTTTCCAG------GAATTCTG-AC-AACTTGTGACCTTCG-TGTTTAC-CTGAGGACACG-CAG-G-TAGAAC---AAACAG----GA-ATGTCACAT
gi|9 : GGACTCT-CGGAGAT-----AA-TGTTCT-AAACT-CGGAAAT-ACTAG---ATT-T-GTAAG--TATAGGTT-A-AG-GATCCATCTTTTGAGTTTAA-TATT-G-CTTTC-AAGTTGA-CAATGA--TT-TG-T-TTGAG--TTCGGT-AATTTTCCGTGTGATTTC-TT-C-TGTATTTTCATTCAGGG--TTG--ATA-TGTGTTTG--TT-CTTCAT--TTCCTGAAT-GTCGG-A--CT-T-TCGTCGG--TTGACAATGGC-GGTGACTTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCATCTTT---TGTTAAT--TTC------CCGTA-ATTAGTTTCCAAC--TCAGCTTTCTCAG-TTTTG----ATA-T-TG-GA-CGCCA--TTTCTTCATA-TCTG---GGAAAA-AT-GCTGGTCTCTAATTCTTCCAGT-TCT-TTT-CGT-AAATTT--TG-TTTTTTAG----CGCTGGGTTTTTCCAG------AATATCGG-AT-ATATTGTGACCTTTG-TGTTTAC-TTGAGGAGACG-CAG-A-CATAAC---AGACAG----GA-GTGTCACAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCATTGTTTGACTGGAGGAATGATACTTTTGGTGACTTCATTTGTTTGACTGGAGGAATGATACAGCTTCTGCTGACGTCATTTGTTTGACCTGGATAATGATAGCAGCTGCTTTTCTAGGTAGACTTCATTGTCTCGTTCATTGTTC
Unaligned ( gi|17 ): TCAATGATCTGACTGGAAGGGATGATAGTTTCTGGTGATTTCTTGTTTTGACTGGAGGCGCTGTATCCAGCTCCT
Alignments
lowQualScore : 111 222 111 111111 111111 111111 1111
lowQualScore : 999 888 1 6 222 55 2 3 000 3 55 3 5 3 88 3 1 666 4 0 44 44 99999 3 3 3 0 3 666 3 3 55 3 3 3 0 44 4 4 4 4 55 4 4 4 55 1 4 1 44 3 3 1 55 88 55 55 3 88 3 3 55 3 3 55 3 1 000000 0 666 3 3 1 1 1 666 1 88 000000 3 2 88 3 7777 3 3 3 3 55 3 666 1 4 55 3 4 55 4 4 55555 444 8888 4 0 111111 44 4 4 22 4 0 444 4 4 4 777 7777 4
lowQualScore : ... ... . . ... .. . . ... . .. . . . .. . . ... . . .. .. ..... . . . . . ... . . .. . . . . .. . . . . .. . . . .. . . . .. . . . .. .. .. .. . .. . . .. . . .. . . ...... . ... . . . . . ... . .. ...... . . .. . .... . . . . .. . ... . . .. . . .. . . ..... ... .... . . ...... .. . . .. . . ... . . . ... .... .
lowQualScore : 222 333 0 7 999 00 5 6 000 6 00 6 5 6 66 6 5 444 4 7 77 00 11111 6 6 6 3 6 444 6 6 00 6 6 6 3 77 0 0 0 0 55 0 0 0 55 6 0 4 66 6 6 4 00 66 66 00 6 66 6 6 00 6 6 00 6 8 555555 9 444 6 6 2 0 4 444 8 66 555555 6 0 66 6 7777 6 6 6 6 00 6 444 0 0 22 0 0 44 0 0 77777 222 5555 1 5 555555 88 0 0 00 0 4 888 0 0 0 000 2222 4
consensus : AGCTTCTGCTGACTTCATTGT-G-CCGC---CATGTTCTNTGTTA-ATGG-G-ATAAT--GACGA-CAGAGAA---CCAAA-CATT--TC-ATCGAGC-TGA--TCTTTG-TTTATTTTCCGAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTT-AGGCGGT-----AA-TGTTCT-AAACT-CGGAATT-CCTAG---ATT-T-GTAAG--TAGAGGTT-A-AG-GAGACATCATTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TT-TG-T-TTGAG--TTCCGT-AATTTTCTGTGTGATTTC-NT-C-TGTATTTTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCGG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCANCTGT---TGTCAGT--TTC------CCGTA-ATTCGTTTCTAAC--TCGGCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGANAA-AT-TCTGGTCTCTAGTTCTTCCAGA-TCC-TTT-TGT-AAACTT--TG-TGTTTTAG----CGCTGAGTTTTTCCAG------AANNTCTG-AT-ANNTTGTGACCTTTG-TGTTTAC-CTGAGGAGACG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
Reference ( family-265 ) : AGCTTCTGCTGACTTCATTGT-G-CCGC---CATGTTCTNTGTTA-ATGG-G-ATAAT--GACGA-CAGAGAA---CCAAA-CATT--TC-ATCGAGC-TGA--TCTTTG-TTTATTTTCCGAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTT-AGGCGGT-----AA-TGTTCT-AAACT-CGGAATT-CCTAG---ATT-T-GTAAG--TAGAGGTT-A-AG-GAGACATCATTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TT-TG-T-TTGAG--TTCCGT-AATTTTCTGTGTGATTTC-NT-C-TGTATTTTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCGG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCANCTGT---TGTCAGT--TTC------CCGTA-ATTCGTTTCTAAC--TCGGCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGANAA-AT-TCTGGTCTCTAGTTCTTCCAGA-TCC-TTT-TGT-AAACTT--TG-TGTTTTAG----CGCTGAGTTTTTCCAG------AANNTCTG-AT-ANNTTGTGACCTTTG-TGTTTAC-CTGAGGAGACG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
gi|1 : AGCTTCTGCTTAATTGATTGT-T-TCAT---CGTGTTCTTTGTGA-ATGG---ATAAT--GGTGA-CAGAGAA---CCAAA-CATT--TC-ACGAAGT-TGT--TCTTTG-TTTATTTTCTGAAGA---GAAAAC-CTTGGTAATGAAACGCGGACTTT-AGGCGGT-----AA-TGTTTT-GAATT-CTGAATT-CCTAG---ACC-T-GTAAG--TTGAAGAT-A-AG-GAAAAATCATTTGATTTTAG-TATT-G-ATTTC-AAATTGG-AAATAA--TT-TG-T-TCGAG--TTTGGT-CATTTTTTGCGTGATTTC-AT-C-TGTATT------CAGGG--CAC--ATA-AATGTTGA--TT-TTTCAT--CTCCTCGAT-GTAAG-A--TT-T-CCGTTCG--TTGACAATGGT-AGTGATCTCTTGG------TGTAAGGCTTCGCCT---TGTT-G-GTCAGCAGCTGT---GGTCAGTGATTC--------GTATATT-ATTTCCAAC--TCGGCCCTCTCGG-TTTGG----ATG-T-CG-GA-AACCA--TTTCTTGATA-TCGG---GGATAA-AT-CCTGGTCTCTAGTTCTTCCAAA-TCT-TTG-TGT-AAACTT--TC-TGTTTTAG----CGCTAAGT------------------TCTG-AT-ATTTCGTGGCCTTTG-TGTTCTC-CAAATAACGCG-CAG-G-TAGAAC---AGATAG----GA-ATATC
gi|10 : cattggtgtgactggaggagatggtacagcttctggtgacgtcattggtgtaactggagatgatacAT--GATGA-CAGAGAA---CCAAA-GTTT--TG-ATCGAGC-TGA--TCTTTG-TTTATTTTCTGAGGA---CAAAAA-CTTGGCAATGCAACTTGAACTTT-AGGCGGT-----AA-TGTTCT-AAATT-CGGAATT-CCTAG---ATT-T-ATAAG--TAGAGGTT-A-AG-AAGACATTATTTGAAATTAG-TATT-G-ATATC-AAGTCGG-CAATG------TA-T-TTGAG--TTCCTTAAATTTTTTGTGTGATTCC-ATCC-TG-ACTTTTATTCAGGG--TAG--ATAGGGTGTTTG--TT-TTTCAT--CTCCTGAAT-GGCAT-ATTTT-T-TTGCTGGTTTTGACAATGGC-GGTGATCTCTCGA------TGTAAGATTTTTCCT---TGTT-G-GTTGGCAGCTGC---TATCAGT--TTT------CTGTA-ATTTGTTTCTAAC--CCTGCTTTCTTAG-TTTGG----ACA-T-CA-GG-CCACA--TTTCTTCATA-TTGG---GGA
gi|11 : tagATTTTCTGTGTGATTTC-GT-C-TGCATTTATATTCAGGG--TAG--ATA-A---------TT-TTTCATATCTCCTGGAT-GTCAG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGATCTCGCGA------TGCA-GATTTCTCCT---TGTT-GTGTTGGCAG-TGT---GATAAGT----C------CCGTA-ATTCGTTTCTAAA--TCG--CTTCTCAG-TTTGG----ACA-T--G-GA-CGCCA--TTTTATCATA-TCGG---GGATAA-AT-TCTCATCTCTAGTTCTTCCAAA-TCG-TTT-TGT-ATACCT--TT-TTATTTAG----C--TGTGTTTTTCAAG------AATATCTG-AT-ATATTGTGACCTTTG-TGCTTTC-CTGAGGAGATA-CAG-G-TAGAGC---AGACAG----GA-ATATCACAT
gi|12 : TTGT-A-CCGC---CATCGTCTGTGTTA-A-AA-T-ATAAT--GAAGA-AAATAAA---CCAA--CATT--TCCATTGAGC-TAA--TCTTTG-TTTATTTTCCATGGA---GAAAAA-AATGGTAATCTAACTCGGACTTT-AGGCAGC-----GA-CTTATT-AAAAT-CGGAATT-TCTAT---A-C-A-ATAAG--TAGAGTTT-A-GG-GAGAC
gi|14 : CTTCTGGTGACTTCATCATTG-TCGC---CATGTTCTGTGTTACATGG-C-ATAATTGGACGA-CAGGGAA---CCAAA-CATTGAGC-ATGCAGC-TGAC-TCTTTGTTTTATTTTCCCTAGA---GAAAAg
gi|15 : ATTGT-G-TCGA---CATGTTTTTCAGTA-ATGGTG-A--GT--GATGA-CAGAGAA---CCAAA-CATT--GC-ATTGAGC-CGA--TCTTTG-TTTATTGGCCGAGGA---GAt
gi|16 : AGCTTCTGCTGACTTCATTGT-gcccacttgtaaagattcaaaata
gi|18 : tccttggtttgactggaggcgactatagcttttggtgacttctgtggttttgctggaaggagaatgcaatatcCTGCTGACTCCATTGT-GCCCGCCAACATGTTCTCTt
gi|2 : T--GACGAACAGAGGATACCCAAA-CATT--TG-ACGGAGCCTGC--TCTGTG-TGGATTT-CTGAGGACGGGAGAAA-CTTGGTAAGGTAACTCGGACTTTTAGGAGGC-----AAATCTTCT-GAACT-CGTA--T-CCTAGGAAATTCT-GTCAGCTTAGAGAGT-G-AGAGAGATATCATT-GATTCTA--TATTTG-CCTTC-A-GCTTT-CAATCA--CTATG-T-G-GACCTTTCAGT-AATGG-CTGTGCTATTTC-CT-C-TGG---TTTATCTAAAG--CAGC-AT---GTGTTTAGTTT-TTTCATG-CTCCGCGAT-GTCGG-A--TT-TTCCGTTGG--TTGACCATGGCAGGTGACCTCGCGGTGAATTTGTAGGA-TTCTCCTCTATGTTGG-GTC-ACATCTCTTAGTGTAAAT--TTCTCCCGTCTGTA-ATTCGTGTGTAGCCGCCGGCTTTCTCCG-TTTGGACCCACA-TCCG-GACCGCCACCTTTC-TCATA---GGCCTGGACAGTAT-TCTGGACTCTAGTTCCTCCAAACTCCATTTGTGT-AAAGCTAATG-AGTTTTAGGATCCATT-AGATTCAACAAACACTCAACATCAACAT-AATATATG-CCCTCG-TGTT--C-TT----AGACG-CAA-G-TAGAAC---AAACAGAAGTAA-ACGTCACATcgtgggtcttagtttagctaatccattggaacca
gi|3 : AGCTTCTGGTGACTTCATTGT-G-CCACT--CATGTTCTTTTGTA-ATGG-GCATAAT--GATGA-AAGAGA-----CTAA-CATT--TC-ATTGAGT-TGA--TCTTTG-TTAATTTTTTGAGGA---GAGAAA-CTCGGTAATGTAACTCGGACTTT-AGACGGT-----AA-TATTCT-AAATT-CGGAATT-CCTAG---ATT-T-GTAGG--CATAGGTT-A-AG-GAGACATCATTTGATTTTAC-TATT-G-ATTTC-AAGTCGG-CAATGA--TC-TT-T-TTGAG--TTCCAT-AATTTTCTGGGTGATTTC-AT-C-AGTGTTTTTATCTAAGG--CAG--CCA-GGTGTTTA--CT-TTTCAT--TTCTTTAAT-GTCGG-A--CT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCAGCAGCTGT---TATCAGT--TTC------CCGTA-ATTCGTTTCTAGC--TCGTCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GTATAA-AT-TCCGGTCTCCAATTCTTCCAGA-TCC-TTT-TGT-AAACTC--TG-TATTTTAG----CGCTGGCTTTTTCCAG------AAATTCTG-AT-AACTTGTGACTTTTA-TGTTCAC-CGGAGGAGACG-CAG-G-TGATAC---AGACAG----GA-ATGTCACATt
gi|4 : T--GATGA-CAGAGAAA--CCAAATCATT--TC-TTCGAGT-TGACTTCTTTG-TTTATTTGCAGAGAA---GAAAAGGTTTGGTAATTCAACTCG-ATTTT-CG-TGGTCTGAAAG-TGTTATGAAACTACTGAATTACCTAG---ATT-TTGCAGG--AGGAGGTTTACAG-GAGACGTCATTTGATTTTAGACATT-GGATTTCCAATTCGGACAATGAAATT-CGGTGTTGAG--TTCCGT-AATTTTCTGTGT-ATTTCTCT-CTTGTG-TTTTATTCAGCGATTAGATATA-TGTGTTTG--TTATTTCA---TTCCTGAATCGGCGC-A--TTAT-CCGTTGC--GTGACAATGGC-GGTGA--TTTCGG------TGTATAGCTTATCCA---TGTT-G-GTCGGCGACTCT---TGTCAGTA-TTT------CCGTA-CTTCGTTTCCAACT-TCGGCTTTTTCAG-TTGGC----ATATT-CATGA-T-CCA--TTTCTT-ATACTCGA---GGGTCA-ATGTCTGCTCTCTAATTC-TCTAAA-TCC--TT-TGTAAAATTT--TG-TGTGTGA-----TG-TGAGTTTTTCCAA------AACTTCTA-GC-AAATTCGGACCTTTGCTGTTTAC-A-GACGACACGCCAG-GATAGAACGAAGGACAGTGC-AA-AGGTCACAT
gi|5 : tggagtg--GACGA-CAGAAAG---CCAAA-TATT--TC-ATTCAGC-TGA--TCTTTG-TTTATTTTCCC-GGA---GAAAAA-CTCGGTAATGTAAAAAGGACTCT-CGA-GAT-----AA-TGTTCT-AAACT-CGGAAAT-ACTAG---ATT-T-GTAAG--TATAGGTT-A-AG-GATCCATCTTTTGAGTTTAA-TATT-G-CTTTT-AAGTTGA-CAATGA--TT-TG-T-TTGAG--TTCGGT-AATTTTCCGTGTGATTTC-TT-C-TGTATTTTCATTCAGGT--T-G--ATA-TGTGTTTG-----TTTCAT--TGTCTGAAT-GTCGGAA--CT-T-TCGTCGG--TTGACAATGG--GGTGACTTCTCGG------T-TAAGATTTCTCCT---TGTT-G-GTCGGCATCTTT---TGTTAAT--TTC------CCGTA-ATTAGTTTCCAAC--TCAGCTTTCTCAGTTTTTG----ATA-T-TG-GA-CGCCA--TTTCTTCATA-TCTG---GGAAAA-AT-GCTGGTCTCTA-TTCTTCCAGT-TCT-TTT-CGT-AAATTT--TGTTTTTTTAG----CGCTGGGTTTTTCCAG------AATATCGG-ATAATATTGTGACCTTTG-TGTTTACTTTGAGGAGACG-CAGAA-CATAAC---AGACAG----GATGTGTCACAT
gi|6 : GTTCTGTGTTA-ATAG---ATAAT--GATGA-CAGAGAG---CCAAG-TAAT--TC-ATTGAGC-TGA--TCTTTA-TTTATCTTTTGGGGC---GTAAAA-CTTGGCAGTGT-------------------------------TCT-AAATT-TGGAATT-CCTAG---ATT-T-GTAAG--TAGAGATT-A-AG-GAGACGTTGTTTGATTTTCG-TATT-G-ATTTC-AAGTCAG-CAATAG--TT-TG-T-TTGAG--TTCTGC-AATTTTCTGAGTTATTTC-TT-C-TGTATTTTTATTTATGG--TAG--ACA-GGTGTTTG--GT-TTTGAT--TTCATGAAT-GTTAG-A--TT-T-CCGCTGG--TTGACAATGGT-TGTGGTCTCTCGG------TGCCAGACTTCTCCT---CGTC-G-GTCGACATCTGT---TTCTAGT--TTT------CTGTA-ATTCGTTTCTAAT--TCGGCTTTCTCGG-TTAGG----ACA-T-CA-GA-CGCCA--TTTTTTCATA-TCGG---GGATAA-AT-TCTTGTTTCTAGTTCTTCCAAA-TCA-TTT-TGC-AAGCTT--TG-AGTTTTAG----AGGCGATTTTTTCCAG------GATATCTA-AT-GTATCATGACCTTTA-TGTTCAC-CAGAGGAGATG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
gi|7 : G-G-ATAAC--GATGA-TAAGGAA---CCAAA-CATT--CC-ATTGAGT-TGA--TCTTTG-TGTATTTTCCCAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTC-AGACGGT-----AA-TATTAT-AAATT-CGGAAAT-CCTAG---ATT-T-GTAAC--TAGAGGTT-A-AG-GACAGATCATTTGATTTTAG-TACT-G-ATTTA-AAATCGG-CAATGA--TA-TG-T-TTGTT--TTCCGC-GATTCTCTGTTTTATTTC-TT-C-TGAATTTTTATTCAGAG--CAG--ATA-GGTGTTTG--TT-TTTCAT--TTCTTGAAT-GGCAG-A--TT-T-CTTTTGG--TTGACAATGGC-GGTGATTTCTCGG------TGTAAGGCTTCTCCT---TGTT-G-GTCTGTAGCTGT---TATTAGT--TTC------CCGTA-ACTCGTTTCTAAC--CCGTCTCTTTCAG-TTTGG----ATA-T-CC-GA-CGCCA--TTCTTTCATA-ACGT---GGGAAA-AT-GTTGTCCTCTAATTTTCCCAGA-TCC-TTT-TAT-AAA----------------------------TTTTCCTT------AAATTCTG-AT-AATTTGTGGCCTTCG-TGTTTAC-CTGATTAGACG-CAA-G-TAATAC---AGACA
gi|8 : tTGTAACTTGGACTTT-GGGCGGT-----AA-TGATCT-AAACT-CGGAATT-CCTAG---ATT-T-GTTAG--TAGAGGTT-A-AG-GAAACATCTTTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TC-TG-T-TTGAG--TTCCGT-TATTTTCTGCGTGATTTC-GT-C-TGTATATTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCAA-A--CT-T-CCGTCGG--TTGACAATGGC-GGTGACTTCTAGG------TGTAAGATTTCTCCA---TGAT-G-GTCAGCATCTTT---TGTTAAT--TTT------GCGTA-ATTTGTTTCTAAC--TGGGCTTTCTCAG-TTTGT----ATA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGGAAA-AT-CCTTGTTTCTAATTCTTCCAGA-TCT-TTT-TGT-AAGTGA--TG-TGTTATAT----CGCTGAGTTTTTCCAG------GAATTCTG-AC-AACTTGTGACCTTCG-TGTTTAC-CTGAGGACACG-CAG-G-TAGAAC---AAACAG----GA-ATGTCACAT
gi|9 : GGACTCT-CGGAGAT-----AA-TGTTCT-AAACT-CGGAAAT-ACTAG---ATT-T-GTAAG--TATAGGTT-A-AG-GATCCATCTTTTGAGTTTAA-TATT-G-CTTTC-AAGTTGA-CAATGA--TT-TG-T-TTGAG--TTCGGT-AATTTTCCGTGTGATTTC-TT-C-TGTATTTTCATTCAGGG--TTG--ATA-TGTGTTTG--TT-CTTCAT--TTCCTGAAT-GTCGG-A--CT-T-TCGTCGG--TTGACAATGGC-GGTGACTTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCATCTTT---TGTTAAT--TTC------CCGTA-ATTAGTTTCCAAC--TCAGCTTTCTCAG-TTTTG----ATA-T-TG-GA-CGCCA--TTTCTTCATA-TCTG---GGAAAA-AT-GCTGGTCTCTAATTCTTCCAGT-TCT-TTT-CGT-AAATTT--TG-TTTTTTAG----CGCTGGGTTTTTCCAG------AATATCGG-AT-ATATTGTGACCTTTG-TGTTTAC-TTGAGGAGACG-CAG-A-CATAAC---AGACAG----GA-GTGTCACAT
blockSeqs : TG CAA G C TG TG T A TAC T GA C C C CT T A CGG G TA GC CTGAA A G A A GAA C T CT T C A GA T G C A AA A G G CT C A G TC C T C AT AT GG GT A AT C A TT A T TT A T TGAATT CTA G T G G G TAG C A TCCCGT . T CG T ACCC T C T C CC C CCT T T GT G C CA G A GCTAA TTT GATC T ACACTC TA C A TA C TTT C A A GAA AAGT T
blockSeqs : GC T G . GC . A . A . . . T . C . T . . A GC . . . . . . . . . . . . G . . . . . . . . . A . G A . . G . C A . . G . . . . . . . T . . . . G G G . A . . . C T . . . . . . . . . C . T G . G . . CCT TT . C . CA . . AT . CT . . . . TGC .
blockSeqs : A . T . T . C . . . . . G . . . T . . A GA . . . . . . . . . . . . C . . . . . . . . . C . T G . . T . . G . . . . . . . . . . C . . . . A T C . A . . . C . . . . . . . . . . T . T A . C . . CTC AG . C . AT . . AC . TT . . . . . .
blockSeqs : G . C . C . T . . . . . T . . . A . . A AC . . . . . . . . . . . . A . . . . . . . . . C . G C . . T . . T . . . . . . . . . . C . . . . G G G . C . . . C . . . . . . . . . . T . T A . C . . TTT TA . G . CT . . AA . CG . . . . . .
blockSeqs : G . T . G . C . . . . . G . . . A . . C AC . . . . . . . . . . . . G . . . . . . . . . G . G A . . T . . T . . . . . . . . . . C . . . . G A C . C . . . C . . . . . . . . . . A . G G . T . . TTT TG . C . TA . . TA . CA . . . . . .
blockSeqs : G . . T . . . . . T . . . A . . C GC . . . . . . . . . . . . G . . . . . . . . . T . T T . . T . . G . . . . . . . . . . T . . . . G T T . T . . . A . . . . . . . . . . T . T A . A . . CTT AG . C . TA . . TA . CT . . . . . .
blockSeqs : . T . . . . . C . . . A . . A GA . . . . . . . . . . . . G . . . . . . . . . C . T T . . A . . G . . . . . . . . . . T . . . . T T G . T . . . C . . . . . . . . . . A . G A . C . . TGA TG . . . AT . . AT . CT . . . . . .
blockSeqs : . C . . . . . T . . . G . . G T . . . . . . . . . . . . A . . . . . . . . . C . G T . . T . . G . . . . . . . . . . C . . . . A G G . T . . . C . . . . . . . . . . A . C A . T . . TTT TT . . . AT . . AC . TT . . . . . .
blockSeqs : . T . . . . . T . . . A . C A . . . . . . . . . . . . . . . . . . . . . . G . G G . . T . . T . . . . . . . . . . C . . . . G T T . T . . . T . . . . . . . . . . A . G . . T . . . . . . . TA . . TA . A . . . .
blockSeqs : . T . . . . . T . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . T T . T . . . A . . . . . . . . . .
blockSeqCons : N** ** NN
originalCons : AGCTTCTGCTGACTTCATTGT-G-CCGC---CATGTTCTNTGTTA-ATGG-G-ATAAT--GACGA-CAGAGAA---CCAAA-CATT--TC-ATCGAGC-TGA--TCTTTG-TTTATTTTCCGAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTT-AGGCGGT-----AA-TGTTCT-AAACT-CGGAATT-CCTAG---ATT-T-GTAAG--TAGAGGTT-A-AG-GAGACATCATTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TT-TG-T-TTGAG--TTCCGT-AATTTTCTGTGTGATTTC-NT-C-TGTATTTTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCGG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCANCTGT---TGTCAGT--TTC------CCGTA-ATTCGTTTCTAAC--TCGGCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGANAA-AT-TCTGGTCTCTAGTTCTTCCAGA-TCC-TTT-TGT-AAACTT--TG-TGTTTTAG----CGCTGAGTTTTTCCAG------AANNTCTG-AT-ANNTTGTGACCTTTG-TGTTTAC-CTGAGGAGACG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
finalCons : AGCTTCTGCTGACTTCATTGT-G-CCGC---CATGTTCTNTGTTA-ATGGN--ATAAT--GACGA-CAGAGAA---CCAAA-CATT--TC-ATCGAGC-TGA--TCTTTG-TTTATTTTCCGAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTT-AGGCGGT-----AA-TGTTCT-AAACT-CGGAATT-CCTAG---ATT-T-GTAAG--TAGAGGTT-A-AG-GAGACATCATTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TT-TG-T-TTGAG--TTCCGT-AATTTTCTGTGTGATTTC-NT-C-TGTATTTTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCGG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCANCTGT---TGTCAGT--TTC------CCGTA-ATTCGTTTCTAAC--TCGGCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGANAA-AT-TCTGGTCTCTAGTTCTTCCAGA-TCC-TTT-TGT-AAACTT--TG-TGTTTTAG----CGCTGAGTTTTTCCAG------AANNTCTG-AT-ANNTTGTGACCTTTG-TGTTTAC-CTGAGGAGACG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCATTGTTTGACTGGAGGAATGATACTTTTGGTGACTTCATTTGTTTGACTGGAGGAATGATACAGCTTCTGCTGACGTCATTTGTTTGACCTGGATAATGATAGCAGCTGCTTTTCTAGGTAGACTTCATTGTCTCGTTCATTGTTC
Unaligned ( gi|17 ): TCAATGATCTGACTGGAAGGGATGATAGTTTCTGGTGATTTCTTGTTTTGACTGGAGGCGCTGTATCCAGCTCCT
Alignments
lowQualScore : 111 11 111 111111 111111 111111 1111
lowQualScore : 999 888 1 6 77 55 2 3 000 3 55 3 5 3 88 3 1 666 4 0 44 44 99999 3 3 3 0 3 666 3 3 55 3 3 3 0 44 4 4 4 4 55 4 4 4 55 1 4 1 44 3 3 1 55 88 55 55 3 88 3 3 55 3 3 55 3 1 000000 0 666 3 3 1 1 1 666 1 88 000000 3 2 88 3 7777 3 3 3 3 55 3 666 1 4 55 3 4 55 4 4 55555 444 8888 4 0 111111 44 4 4 22 4 0 444 4 4 4 777 7777 4
lowQualScore : ... ... . . .. .. . . ... . .. . . . .. . . ... . . .. .. ..... . . . . . ... . . .. . . . . .. . . . . .. . . . .. . . . .. . . . .. .. .. .. . .. . . .. . . .. . . ...... . ... . . . . . ... . .. ...... . . .. . .... . . . . .. . ... . . .. . . .. . . ..... ... .... . . ...... .. . . .. . . ... . . . ... .... .
lowQualScore : 222 333 0 7 99 00 5 6 000 6 00 6 5 6 66 6 5 444 4 7 77 00 11111 6 6 6 3 6 444 6 6 00 6 6 6 3 77 0 0 0 0 55 0 0 0 55 6 0 4 66 6 6 4 00 66 66 00 6 66 6 6 00 6 6 00 6 8 555555 9 444 6 6 2 0 4 444 8 66 555555 6 0 66 6 7777 6 6 6 6 00 6 444 0 0 22 0 0 44 0 0 77777 222 5555 1 5 555555 88 0 0 00 0 4 888 0 0 0 000 2222 4
consensus : AGCTTCTGCTGACTTCATTGT-G-CCGC---CATGTTCTNTGTTA-ATGGN-ATAAT--GACGA-CAGAGAA---CCAAA-CATT--TC-ATCGAGC-TGA--TCTTTG-TTTATTTTCCGAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTT-AGGCGGT-----AA-TGTTCT-AAACT-CGGAATT-CCTAG---ATT-T-GTAAG--TAGAGGTT-A-AG-GAGACATCATTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TT-TG-T-TTGAG--TTCCGT-AATTTTCTGTGTGATTTC-NT-C-TGTATTTTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCGG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCANCTGT---TGTCAGT--TTC------CCGTA-ATTCGTTTCTAAC--TCGGCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGANAA-AT-TCTGGTCTCTAGTTCTTCCAGA-TCC-TTT-TGT-AAACTT--TG-TGTTTTAG----CGCTGAGTTTTTCCAG------AANNTCTG-AT-ANNTTGTGACCTTTG-TGTTTAC-CTGAGGAGACG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
Reference ( family-265 ) : AGCTTCTGCTGACTTCATTGT-G-CCGC---CATGTTCTNTGTTA-ATGGN-ATAAT--GACGA-CAGAGAA---CCAAA-CATT--TC-ATCGAGC-TGA--TCTTTG-TTTATTTTCCGAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTT-AGGCGGT-----AA-TGTTCT-AAACT-CGGAATT-CCTAG---ATT-T-GTAAG--TAGAGGTT-A-AG-GAGACATCATTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TT-TG-T-TTGAG--TTCCGT-AATTTTCTGTGTGATTTC-NT-C-TGTATTTTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCGG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCANCTGT---TGTCAGT--TTC------CCGTA-ATTCGTTTCTAAC--TCGGCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGANAA-AT-TCTGGTCTCTAGTTCTTCCAGA-TCC-TTT-TGT-AAACTT--TG-TGTTTTAG----CGCTGAGTTTTTCCAG------AANNTCTG-AT-ANNTTGTGACCTTTG-TGTTTAC-CTGAGGAGACG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
gi|1 : AGCTTCTGCTTAATTGATTGT-T-TCAT---CGTGTTCTTTGTGA-ATGG--ATAAT--GGTGA-CAGAGAA---CCAAA-CATT--TC-ACGAAGT-TGT--TCTTTG-TTTATTTTCTGAAGA---GAAAAC-CTTGGTAATGAAACGCGGACTTT-AGGCGGT-----AA-TGTTTT-GAATT-CTGAATT-CCTAG---ACC-T-GTAAG--TTGAAGAT-A-AG-GAAAAATCATTTGATTTTAG-TATT-G-ATTTC-AAATTGG-AAATAA--TT-TG-T-TCGAG--TTTGGT-CATTTTTTGCGTGATTTC-AT-C-TGTATT------CAGGG--CAC--ATA-AATGTTGA--TT-TTTCAT--CTCCTCGAT-GTAAG-A--TT-T-CCGTTCG--TTGACAATGGT-AGTGATCTCTTGG------TGTAAGGCTTCGCCT---TGTT-G-GTCAGCAGCTGT---GGTCAGTGATTC--------GTATATT-ATTTCCAAC--TCGGCCCTCTCGG-TTTGG----ATG-T-CG-GA-AACCA--TTTCTTGATA-TCGG---GGATAA-AT-CCTGGTCTCTAGTTCTTCCAAA-TCT-TTG-TGT-AAACTT--TC-TGTTTTAG----CGCTAAGT------------------TCTG-AT-ATTTCGTGGCCTTTG-TGTTCTC-CAAATAACGCG-CAG-G-TAGAAC---AGATAG----GA-ATATC
gi|10 : cattggtgtgactggaggagatggtacagcttctggtgacgtcattggtgtaactggagatgatacAT--GATGA-CAGAGAA---CCAAA-GTTT--TG-ATCGAGC-TGA--TCTTTG-TTTATTTTCTGAGGA---CAAAAA-CTTGGCAATGCAACTTGAACTTT-AGGCGGT-----AA-TGTTCT-AAATT-CGGAATT-CCTAG---ATT-T-ATAAG--TAGAGGTT-A-AG-AAGACATTATTTGAAATTAG-TATT-G-ATATC-AAGTCGG-CAATG------TA-T-TTGAG--TTCCTTAAATTTTTTGTGTGATTCC-ATCC-TG-ACTTTTATTCAGGG--TAG--ATAGGGTGTTTG--TT-TTTCAT--CTCCTGAAT-GGCAT-ATTTT-T-TTGCTGGTTTTGACAATGGC-GGTGATCTCTCGA------TGTAAGATTTTTCCT---TGTT-G-GTTGGCAGCTGC---TATCAGT--TTT------CTGTA-ATTTGTTTCTAAC--CCTGCTTTCTTAG-TTTGG----ACA-T-CA-GG-CCACA--TTTCTTCATA-TTGG---GGA
gi|11 : tagATTTTCTGTGTGATTTC-GT-C-TGCATTTATATTCAGGG--TAG--ATA-A---------TT-TTTCATATCTCCTGGAT-GTCAG-A--TT-T-CCGTTGG--TTGACAATGGC-GGTGATCTCGCGA------TGCA-GATTTCTCCT---TGTT-GTGTTGGCAG-TGT---GATAAGT----C------CCGTA-ATTCGTTTCTAAA--TCG--CTTCTCAG-TTTGG----ACA-T--G-GA-CGCCA--TTTTATCATA-TCGG---GGATAA-AT-TCTCATCTCTAGTTCTTCCAAA-TCG-TTT-TGT-ATACCT--TT-TTATTTAG----C--TGTGTTTTTCAAG------AATATCTG-AT-ATATTGTGACCTTTG-TGCTTTC-CTGAGGAGATA-CAG-G-TAGAGC---AGACAG----GA-ATATCACAT
gi|12 : TTGT-A-CCGC---CATCGTCTGTGTTA-A-AAT-ATAAT--GAAGA-AAATAAA---CCAA--CATT--TCCATTGAGC-TAA--TCTTTG-TTTATTTTCCATGGA---GAAAAA-AATGGTAATCTAACTCGGACTTT-AGGCAGC-----GA-CTTATT-AAAAT-CGGAATT-TCTAT---A-C-A-ATAAG--TAGAGTTT-A-GG-GAGAC
gi|14 : CTTCTGGTGACTTCATCATTG-TCGC---CATGTTCTGTGTTACATGGC-ATAATTGGACGA-CAGGGAA---CCAAA-CATTGAGC-ATGCAGC-TGAC-TCTTTGTTTTATTTTCCCTAGA---GAAAAg
gi|15 : ATTGT-G-TCGA---CATGTTTTTCAGTA-ATGGT-G-AGT--GATGA-CAGAGAA---CCAAA-CATT--GC-ATTGAGC-CGA--TCTTTG-TTTATTGGCCGAGGA---GAt
gi|16 : AGCTTCTGCTGACTTCATTGT-gcccacttgtaaagattcaaaata
gi|18 : tccttggtttgactggaggcgactatagcttttggtgacttctgtggttttgctggaaggagaatgcaatatcCTGCTGACTCCATTGT-GCCCGCCAACATGTTCTCTt
gi|2 : T--GACGAACAGAGGATACCCAAA-CATT--TG-ACGGAGCCTGC--TCTGTG-TGGATTT-CTGAGGACGGGAGAAA-CTTGGTAAGGTAACTCGGACTTTTAGGAGGC-----AAATCTTCT-GAACT-CGTA--T-CCTAGGAAATTCT-GTCAGCTTAGAGAGT-G-AGAGAGATATCATT-GATTCTA--TATTTG-CCTTC-A-GCTTT-CAATCA--CTATG-T-G-GACCTTTCAGT-AATGG-CTGTGCTATTTC-CT-C-TGG---TTTATCTAAAG--CAGC-AT---GTGTTTAGTTT-TTTCATG-CTCCGCGAT-GTCGG-A--TT-TTCCGTTGG--TTGACCATGGCAGGTGACCTCGCGGTGAATTTGTAGGA-TTCTCCTCTATGTTGG-GTC-ACATCTCTTAGTGTAAAT--TTCTCCCGTCTGTA-ATTCGTGTGTAGCCGCCGGCTTTCTCCG-TTTGGACCCACA-TCCG-GACCGCCACCTTTC-TCATA---GGCCTGGACAGTAT-TCTGGACTCTAGTTCCTCCAAACTCCATTTGTGT-AAAGCTAATG-AGTTTTAGGATCCATT-AGATTCAACAAACACTCAACATCAACAT-AATATATG-CCCTCG-TGTT--C-TT----AGACG-CAA-G-TAGAAC---AAACAGAAGTAA-ACGTCACATcgtgggtcttagtttagctaatccattggaacca
gi|3 : AGCTTCTGGTGACTTCATTGT-G-CCACT--CATGTTCTTTTGTA-ATGGGCATAAT--GATGA-AAGAGA-----CTAA-CATT--TC-ATTGAGT-TGA--TCTTTG-TTAATTTTTTGAGGA---GAGAAA-CTCGGTAATGTAACTCGGACTTT-AGACGGT-----AA-TATTCT-AAATT-CGGAATT-CCTAG---ATT-T-GTAGG--CATAGGTT-A-AG-GAGACATCATTTGATTTTAC-TATT-G-ATTTC-AAGTCGG-CAATGA--TC-TT-T-TTGAG--TTCCAT-AATTTTCTGGGTGATTTC-AT-C-AGTGTTTTTATCTAAGG--CAG--CCA-GGTGTTTA--CT-TTTCAT--TTCTTTAAT-GTCGG-A--CT-T-CCGTTGG--TTGACAATGGC-GGTGACCTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCAGCAGCTGT---TATCAGT--TTC------CCGTA-ATTCGTTTCTAGC--TCGTCTTTCTCAG-TTTGG----ACA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GTATAA-AT-TCCGGTCTCCAATTCTTCCAGA-TCC-TTT-TGT-AAACTC--TG-TATTTTAG----CGCTGGCTTTTTCCAG------AAATTCTG-AT-AACTTGTGACTTTTA-TGTTCAC-CGGAGGAGACG-CAG-G-TGATAC---AGACAG----GA-ATGTCACATt
gi|4 : T--GATGA-CAGAGAAA--CCAAATCATT--TC-TTCGAGT-TGACTTCTTTG-TTTATTTGCAGAGAA---GAAAAGGTTTGGTAATTCAACTCG-ATTTT-CG-TGGTCTGAAAG-TGTTATGAAACTACTGAATTACCTAG---ATT-TTGCAGG--AGGAGGTTTACAG-GAGACGTCATTTGATTTTAGACATT-GGATTTCCAATTCGGACAATGAAATT-CGGTGTTGAG--TTCCGT-AATTTTCTGTGT-ATTTCTCT-CTTGTG-TTTTATTCAGCGATTAGATATA-TGTGTTTG--TTATTTCA---TTCCTGAATCGGCGC-A--TTAT-CCGTTGC--GTGACAATGGC-GGTGA--TTTCGG------TGTATAGCTTATCCA---TGTT-G-GTCGGCGACTCT---TGTCAGTA-TTT------CCGTA-CTTCGTTTCCAACT-TCGGCTTTTTCAG-TTGGC----ATATT-CATGA-T-CCA--TTTCTT-ATACTCGA---GGGTCA-ATGTCTGCTCTCTAATTC-TCTAAA-TCC--TT-TGTAAAATTT--TG-TGTGTGA-----TG-TGAGTTTTTCCAA------AACTTCTA-GC-AAATTCGGACCTTTGCTGTTTAC-A-GACGACACGCCAG-GATAGAACGAAGGACAGTGC-AA-AGGTCACAT
gi|5 : tggagtg--GACGA-CAGAAAG---CCAAA-TATT--TC-ATTCAGC-TGA--TCTTTG-TTTATTTTCCC-GGA---GAAAAA-CTCGGTAATGTAAAAAGGACTCT-CGA-GAT-----AA-TGTTCT-AAACT-CGGAAAT-ACTAG---ATT-T-GTAAG--TATAGGTT-A-AG-GATCCATCTTTTGAGTTTAA-TATT-G-CTTTT-AAGTTGA-CAATGA--TT-TG-T-TTGAG--TTCGGT-AATTTTCCGTGTGATTTC-TT-C-TGTATTTTCATTCAGGT--T-G--ATA-TGTGTTTG-----TTTCAT--TGTCTGAAT-GTCGGAA--CT-T-TCGTCGG--TTGACAATGG--GGTGACTTCTCGG------T-TAAGATTTCTCCT---TGTT-G-GTCGGCATCTTT---TGTTAAT--TTC------CCGTA-ATTAGTTTCCAAC--TCAGCTTTCTCAGTTTTTG----ATA-T-TG-GA-CGCCA--TTTCTTCATA-TCTG---GGAAAA-AT-GCTGGTCTCTA-TTCTTCCAGT-TCT-TTT-CGT-AAATTT--TGTTTTTTTAG----CGCTGGGTTTTTCCAG------AATATCGG-ATAATATTGTGACCTTTG-TGTTTACTTTGAGGAGACG-CAGAA-CATAAC---AGACAG----GATGTGTCACAT
gi|6 : GTTCTGTGTTA-ATAG--ATAAT--GATGA-CAGAGAG---CCAAG-TAAT--TC-ATTGAGC-TGA--TCTTTA-TTTATCTTTTGGGGC---GTAAAA-CTTGGCAGTGT-------------------------------TCT-AAATT-TGGAATT-CCTAG---ATT-T-GTAAG--TAGAGATT-A-AG-GAGACGTTGTTTGATTTTCG-TATT-G-ATTTC-AAGTCAG-CAATAG--TT-TG-T-TTGAG--TTCTGC-AATTTTCTGAGTTATTTC-TT-C-TGTATTTTTATTTATGG--TAG--ACA-GGTGTTTG--GT-TTTGAT--TTCATGAAT-GTTAG-A--TT-T-CCGCTGG--TTGACAATGGT-TGTGGTCTCTCGG------TGCCAGACTTCTCCT---CGTC-G-GTCGACATCTGT---TTCTAGT--TTT------CTGTA-ATTCGTTTCTAAT--TCGGCTTTCTCGG-TTAGG----ACA-T-CA-GA-CGCCA--TTTTTTCATA-TCGG---GGATAA-AT-TCTTGTTTCTAGTTCTTCCAAA-TCA-TTT-TGC-AAGCTT--TG-AGTTTTAG----AGGCGATTTTTTCCAG------GATATCTA-AT-GTATCATGACCTTTA-TGTTCAC-CAGAGGAGATG-CAG-G-TAGAAC---AGACAG----GA-ATGTCACAT
gi|7 : GG-ATAAC--GATGA-TAAGGAA---CCAAA-CATT--CC-ATTGAGT-TGA--TCTTTG-TGTATTTTCCCAGGA---GAAAAA-CTCGGTAATGTAACTCGGACTTC-AGACGGT-----AA-TATTAT-AAATT-CGGAAAT-CCTAG---ATT-T-GTAAC--TAGAGGTT-A-AG-GACAGATCATTTGATTTTAG-TACT-G-ATTTA-AAATCGG-CAATGA--TA-TG-T-TTGTT--TTCCGC-GATTCTCTGTTTTATTTC-TT-C-TGAATTTTTATTCAGAG--CAG--ATA-GGTGTTTG--TT-TTTCAT--TTCTTGAAT-GGCAG-A--TT-T-CTTTTGG--TTGACAATGGC-GGTGATTTCTCGG------TGTAAGGCTTCTCCT---TGTT-G-GTCTGTAGCTGT---TATTAGT--TTC------CCGTA-ACTCGTTTCTAAC--CCGTCTCTTTCAG-TTTGG----ATA-T-CC-GA-CGCCA--TTCTTTCATA-ACGT---GGGAAA-AT-GTTGTCCTCTAATTTTCCCAGA-TCC-TTT-TAT-AAA----------------------------TTTTCCTT------AAATTCTG-AT-AATTTGTGGCCTTCG-TGTTTAC-CTGATTAGACG-CAA-G-TAATAC---AGACA
gi|8 : tTGTAACTTGGACTTT-GGGCGGT-----AA-TGATCT-AAACT-CGGAATT-CCTAG---ATT-T-GTTAG--TAGAGGTT-A-AG-GAAACATCTTTTGATTTTAG-TATT-G-ATTTC-AAGTCGG-CAATGA--TC-TG-T-TTGAG--TTCCGT-TATTTTCTGCGTGATTTC-GT-C-TGTATATTTATTCAGGG--TAG--ATA-GGTGTTTG--TT-TTTCAT--TTCCTGAAT-GTCAA-A--CT-T-CCGTCGG--TTGACAATGGC-GGTGACTTCTAGG------TGTAAGATTTCTCCA---TGAT-G-GTCAGCATCTTT---TGTTAAT--TTT------GCGTA-ATTTGTTTCTAAC--TGGGCTTTCTCAG-TTTGT----ATA-T-CG-GA-CGCCA--TTTCTTCATA-TCGG---GGGAAA-AT-CCTTGTTTCTAATTCTTCCAGA-TCT-TTT-TGT-AAGTGA--TG-TGTTATAT----CGCTGAGTTTTTCCAG------GAATTCTG-AC-AACTTGTGACCTTCG-TGTTTAC-CTGAGGACACG-CAG-G-TAGAAC---AAACAG----GA-ATGTCACAT
gi|9 : GGACTCT-CGGAGAT-----AA-TGTTCT-AAACT-CGGAAAT-ACTAG---ATT-T-GTAAG--TATAGGTT-A-AG-GATCCATCTTTTGAGTTTAA-TATT-G-CTTTC-AAGTTGA-CAATGA--TT-TG-T-TTGAG--TTCGGT-AATTTTCCGTGTGATTTC-TT-C-TGTATTTTCATTCAGGG--TTG--ATA-TGTGTTTG--TT-CTTCAT--TTCCTGAAT-GTCGG-A--CT-T-TCGTCGG--TTGACAATGGC-GGTGACTTCTCGG------TGTAAGATTTCTCCT---TGTT-G-GTCGGCATCTTT---TGTTAAT--TTC------CCGTA-ATTAGTTTCCAAC--TCAGCTTTCTCAG-TTTTG----ATA-T-TG-GA-CGCCA--TTTCTTCATA-TCTG---GGAAAA-AT-GCTGGTCTCTAATTCTTCCAGT-TCT-TTT-CGT-AAATTT--TG-TTTTTTAG----CGCTGGGTTTTTCCAG------AATATCGG-AT-ATATTGTGACCTTTG-TGTTTAC-TTGAGGAGACG-CAG-A-CATAAC---AGACAG----GA-GTGTCACAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCATTGTTTGACTGGAGGAATGATACTTTTGGTGACTTCATTTGTTTGACTGGAGGAATGATACAGCTTCTGCTGACGTCATTTGTTTGACCTGGATAATGATAGCAGCTGCTTTTCTAGGTAGACTTCATTGTCTCGTTCATTGTTC
Unaligned ( gi|17 ): TCAATGATCTGACTGGAAGGGATGATAGTTTCTGGTGATTTCTTGTTTTGACTGGAGGCGCTGTATCCAGCTCCT