lowQualScore : 1111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 111 2 11 11 1 333333333333 11 22222222 11 11 1 333333333 1 111 1 22222222 1 1 222222 11111111111 111111 1111 2222222 11 11 1111 5555555555555555555555 11 11 111 11 3333 1 1 2222 111111111111111 1 3 11111 2222 11 1 11 2222 3333333 1 1 11 44444 111 1 1 2222222222222 11 22222222222222222222222222 5555555555555555555555 1 111 111 1 222222 1 1 11 2222222 3333 1 2222 1111 1 1111 11 1 1111111111111111111111 2222222 11 22 88888888888888888 1 11 11 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 555555555555555 1 1 1 11 1 11 11 1 11 55555555555555 111 22222 333333333333333 1111 11 2222222 111 111 11 1 1 444 1 11 1 0000000000000000000000000000000000000000000000000000000000 22 2222222 1111 2222222222222 2222222222 1111 1111 33333333 111 4444444444444444 11111 11 11111111 88888888888888888888888888888888888888 11
lowQualScore : 2 22 5 5 111 0 88 4 8 11 8 11 88 0 8 88 8 0 88 8 0 888888888888 22 66 33 55555555 33 33 0 55 3 777777777 55 0 555 3 2 0 5 0 99999999 0 0 0 8 0 0 6 0 8 9 8 333333 88 3 3 44444444444 999999 4444 6666666 5 11 8 3 11 8 8 11 3 8 11 0 9999 0000000000000000000000 8 99 99 111 33 8 8888 2 0 0 1111 3 777777777777777 0 3 8 0 55555 8888 88 2 6 77 0000 2222222 7 0 5 33 66666 555 0 0 7777777777777 999 3 33 77777777777777777777777777 7 5555555555555555555555 0 777 111 0 888888 0 5 33 6666666 1111 2 0 1 2 1111 55 9999 0 0 8888 3 9 1 88 3 8888888888888888888888 7777777 77 00 2 11111111111111111 3 9 0 99 33 3 000 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 000000000000000 7 7 3 0 0 0 2 33 2 0 33 33 3 2 0 66 0 22 66666666666666 777 99999 222222222222222 2 4444 11 7777777 0 2 3 2 777 777 33 0 0 333 2 222 3 7 33 3 0 7 2222222222222222222222222222222222222222222222222222222222 7 888 0 77 0 1111111 3 4444 6 5555555555555 1111111111 3333 2222 5 55555555 5 000 8888888888888888 22222 11 5 5 99 0 2 5 9999 1 66 33333333 4 66 4 7777777 4 4 777 4 44444444444444444444444444444444444444 11 5 66 5 5 5
lowQualScore : . .. . . ... . .. . . .. . .. .. . . .. . . .. . . ............ .. .. .. ........ .. .. . .. . ......... .. . ... . . . . . ........ . . . . . . . . . . . ...... .. . . ........... ...... .... ....... . .. . . .. . . .. . . .. . .... ...................... . .. .. ... .. . .... . . . .... . ............... . . . . ..... .... .. . . .. .... ....... . . . .. ..... ... . . ............. ... . .. .......................... . ...................... . ... ... . ...... . . .. ....... .... . . . . .... .. .... . . .... . . . .. . ...................... ....... .. .. . ................. . . . .. .. . ... ........................................................................................ . ............... . . . . . . . .. . . .. .. . . . .. . .. .............. ... ..... ............... . .... .. ....... . . . . ... ... .. . . ... . ... . . .. . . . .......................................................... . ... . .. . ....... . .... . ............. .......... .... .... . ........ . ... ................ ..... .. . . .. . . . .... . .. ........ . .. . ....... . . ... . ...................................... .. . .. . . .
lowQualScore : 5 55 0 0 222 8 88 0 0 00 0 88 88 8 0 88 0 6 66 0 8 555555555555 88 55 88 55555555 88 88 0 88 2 222222222 00 0 000 2 5 0 0 8 00000000 8 6 8 0 8 8 0 8 0 6 0 222222 88 2 5 55555555555 222222 2222 0000000 6 00 0 8 00 0 0 66 8 0 66 8 6666 2222222222222222222222 0 22 00 000 88 8 0000 0 0 0 2222 2 222222222222222 0 2 8 0 88888 3333 33 0 7 33 7777 5555555 0 0 5 88 00000 555 0 0 8888888888888 000 2 88 22222222222222222222222222 0 0000000000000000000000 0 555 000 0 888888 0 5 88 5555555 2222 5 0 2 5 2222 88 5555 8 0 2222 0 2 0 33 3 3333333333333333333333 3333333 00 77 5 55555555555555555 2 2 0 88 88 2 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 777777777777777 3 3 2 0 0 0 5 22 5 0 88 55 2 5 2 00 0 55 22222222222222 555 88888 888888888888888 2 8888 22 3333333 8 5 0 5 555 555 22 0 5 555 5 333 3 3 88 2 0 3 7777777777777777777777777777777777777777777777777777777777 3 222 8 55 3 2222222 7 2222 7 3333333333333 4444444444 9999 1111 7 99999999 7 000 7777777777777777 55555 99 0 0 55 9 5 0 4444 9 11 00000000 4 11 0 0000000 4 4 888 4 88888888888888888888888888888888888888 99 0 99 6 7 0
consensus : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAAAGGT-AGGC--G-AACC-TAATCGA-AACAGA-CGTT-ATC-TACCTGGA-TT-GACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCAT--------CGNTTTGAGAA-CAAGATTCAATAAA-AGCAAA-TC-----GTCA-AGTCATGA---A---TT--TAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-NGAAT-TT-G-CA--AATTANT-TTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACCGN-GT-GAGGAGAGAC----TGAATATT--ATCGACGGAC-GGT-GA-CGAG-------ATTTA-CTGCATTT--CACGAAA-TATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTC--GAAAGGGGG----AAAATCAAA-CGTGTGTAAT--C-AATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA------AA-GATTTTGCA--CT-----TTTGTATG---CGGTTTGC-CGCGCGAGCATTT----CAAGACAATC--TCG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTAAAACAAG-TTTTCAATTATGAC----------T---TG-GTTCTTTATTGGA-TCTTG-AAAGAA--ATATATAAC-GGTTACACATNCGNTCTCGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAA----TAAGATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----NTTATT----ATA---ATGTTTTC--C--GACAA-NGAC-TG------TTCT-T--GTGGGA-TGC-CG-T--GAACAGTGATTTTTNAGGACATT---CTCT---TCGGGTT-AC-AAAACAGCTATGACTGACCTT-TG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-----ATCGACT-CA-AAATT-------ANAAAAC----CA-TACCGCA-GCG-----ATCTCTGCGCTGCGGTAGATGAA-GGAAT---TCG-GCACGC----GTGCG-GTTG-AA-TTGC-T--ATC-GA-----A-CATTAC-G-NTC----T-GGA--------TGTCC-AGT---TG-CA-ACT-----T-A-CT-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGT--CT-T-T-TGTTTGAT-TG--ACANG--CGG--TA-T-GTT---TTTG-ATCT-C----C-GT-----CCAGGT-AA--TTT--G---AG-GG--AGGTGGCT-TA--AAANTGG-GTNTTT
Reference ( gi|1 ) : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CGTT-ATC-TACCTGGA-TT-GACCAGG--GTT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCAT--------CGTTTTGAGAA-CAAGATTCAATAAA-AGCTAA-TC-----GTCA-AGTCATAA---A---TT--TAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAA--TT-G-CA--AAGTAA--TTTCTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTCG-CCGG-GT-GAGGAGAGAC----TGAATATT--ATCGACGGAC-AGT-GA-CGAG-------ATTTA-CTGCATTT--CAC--A--TATC-ATTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTC--AAAAAGGGG----AAAATCAAA-CGTGTGTAAT--C-A-TG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA------AA-GATTTTGCA--CT-----TATGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGATTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACAGAAACAAG-TTTTCAATTATGAC----------TAAATG-GTTCTTTATTGGA-TCTTG-AAAGAA--ATATATAGC-GGTTACACA----------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTT----T-AAA----TTAGATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAA-CGTTG-TCC-AAAAA----TTTAT-----ATA---ATGTTTTC--T--GACAATGGAC-TG------TTTT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATT---CTCT---TCGGGTT-AC-AAATCAGCTATGACTGACCAT-TG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT----CATCGACT-CA-TAATTTTTTTTTAGAAAAC----CA-TACCGCA-GCGT---TATCTCTGCGCTGCGGTAGATGAA--GAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGG-T--ATC-AA-----A-CATTAC-G-CTC----T-GGAG-------TGTCC-AGT---TG-CA-ACT-----C-A-CT-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGT--CT-T-T-TATTTGAT-TG--ACAAG--CGG--TA-T-GTT---TTTG-ATCTGC----T-GT-----C---GT-AA--TTT--G---A--GG--AGGTGGCT-TA--AAAATGG-GTGTTT
gi|5 : GCCCCATTTCGACGACGGCTCGGTTATTAA-TAA-G-T-AGCG--G-AGGC-CAATCGA-A-CAGA-CGTT-ATC-TACCTGGAGTT-GACC----------------GGCGT-AA--TTGGCT-A-TTACACATTTAGA--AATA-CA--GGAAA-------TGAAAAC-TG-TT--AGA-GTTGGAAACTCTACCTGTTCAT--------CG-TTTGAG-A-CAA-ATTCAATATA-AATCAATTC-----GTCA-AGTTCTGATTTA---TG--TAT------ATAAAA----
gi|3 : CCATTT-G-CGACCG-TCG-TTATTAA-TAC-GGT-AGGC--GGAACC-TAATCGA-AACAGA-CGTTTATC-TACCTGGA-TTTGACCAGG--GCT-GT-CC-A--TGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAGCGTGCTT--AGAAGTTG-AAA-TCTAC-TGTTCAT--------CGGCT-GAGAATCAAGAT-CAA--AA-TGCTAA-TC-----GTCA---TCA-GA---A---TT--TAT------CTAAAA----ATA-------T-A--C-TGAT--TA-C-AT-GATTATTAT---CGA-GAG---TGTGAGGACGT-----ATAGCAT----TC---GGAAGAT-TA--GAAT-TT-G-CA--AATTGAT-TTTCTATAA-AA----CTTTTT--TATA-TTCTAATCGCTTCT-CAATTCGACCGT-G--AAGGAGAGAC----TGAATATT--AT-GACGGACGAGT-G--CGAT-------A--TA-CTGCATTT--CACAAA--TATCTACTTGCATTCAG-AGTT-TATAAA-CAGCAT-----TTCAACATG-TATT--TC----AAAGGGGG----AAAATC-AA-CTTGTG-AAT--CAA-TG----CAAGC---G-GC-ATGG---CCCGAA-TGTGTCTGA------AATGA-TTTGCA--CT-----TTTGTATA---CGGTTGGCGCGCACGAG-ATTT----CAAGA-AA-----CG-TA-T----------TGATTGA--CACTGCACGCGA----------------------CTGTCAAACGAAAAACTAAAACAAG--TTTCAATTAT-AC----------T---TG-GTTC--TATTGGATTCTTGAAAAGAAACATATATACG-GGTTACACATCTCGTCTCGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGATATTTTT----TAAAA----AAAGA--TTGAAAGAAAA-TTTCTG-C-GAGGGT-A-CGA-TC-T-CAG--TCCAGGC-CCTCGATGACAAAGCCGTTG-TCC-AAAAA----AT--T-----ATA---ATGTTTTC--C--GACAA-ATAC-TG------TTTTCT--GTGGCT-TGCTTG------ACAGTTATTTTTTA-GACGTT---CTCT---TCGGGTTAAC-AAATCA--CATGA-TAGCC-T-TG-GGT-ATTTTCA--AATA-TT-AGTTC-CGTAATT-----A-CGACTACATTAATTTTGTTTTTTAAAAC----CATTACCGCA-GCG-----ATCTC-GCGCTTCGTT-GAT-AA--GAATTCCTCG-GCA-GC----GT-CG-GTTG--A-T--G-T--ATCAAA-----A-CATTAC-G-CTC----C-GAGG-------TGTCC-AGT---TG-C--ACT-----CAA-CT-----AAA--CT--TCATATCA--AAT-TGA-GC----TA-TGT--CC-T-TATA-TTGAT-T---ACAAT--C-G--TA-T-G-T---TTTG-ATCT-C----T-GTCCAGCC---GA-AA--TTT--C---A--GGT-ATGTGGCT-CA--Aggcgacgagtacaatgtataaaccgctatctgaaattattattctgattaacattggttttatttacgatgattttgaggacgttgccatgaagatttagaatcttgccaaatttttttaaaaaacttctttttagtaattcgtatacttgtacacttagccacgtggagg
gi|8 : CCATTTCG-CGAC-GGTTG-TT-TTA--TAATGGT-AGAG--G-AACT---ATCGA-AACAGA-CGCT-ATCTTACC-GGA-TT-GACCAGG--GGG-GC-CCAAGATG-TAA--TTG--T-G-T-ACACAT--AGA--AATA-C-CAAG-AA-------T-AACA-GTG-TT--TGAAGTTGGAAA-TCTACGTGT--AT--------CGTTTTCAGAG-AAAGATTC-ATAAA-AGCAAA-T------GTCA-AATCATGA---A---TT--TAT------CTAAAA----TTATACGTGTTTA--C-TG-T--TT-C-A-TGAAT-TTA-TTACGATGA----TTTGAGGACGT----ATTAGC-------C------AGAT-GA-AGAA--TT-G-
gi|17 : ggCCATTTCG---AC-GGT-G-TTATTAAATAAAGGT-AGGC--G-AACC-TAATCG---ACAGA-CGGT--TC-TACC-----TT-GACCAGG--G
gi|2 : aaaggCGGTC---TATTAA-TAAAGGTCAGGCCGG-AATCGTAAATGATAACAGATCGTT-ATC-TAT-TGGC-TT-GATCAAGAGGCTAGCTCC-AGGTGTTTAGTTTG-ATCACT-ACACAT--AGACAAATAACACAGGAAAAAATCATC-AAAACGTG-TTTAGGAAGTTGGAAA-TCTACGTGTTAATCAGCGCCGCGATTTGAGAA-C-AGATTCTATAAAGAGCAAA-TTTGCCGGTTAGAGT-ATGA---ATTGTT--TATGCTCGACTGTAATGATTTA-------TGA--CATGGTGATG-CAATTG-TT-TTATTTACGATGATGTGTTTGAGGACGCCATGTATATCATGCAATCTGAGGAAGATATAGTGAT--TT-T-GATTAACTAGTTTTTTTA-GATAA----C-TTTT-GT-TAT--------GCTTCT-C-ATTAGACCGGAGT-GAGAGGAGACTCGTTAGATATTAGATTGG-GGAC-GGTCGATTGAGCTGATATACTTA-CTGC--TT--CAC--AACTATC-A-CTGCATTCAGAAGTTCTATAAAGTATCAT-----TTCAA---GTTATTGGTTCGAAAGAAGGGGGTGTGAAATCACATTGTGCTCGATTAC-A-TATTGCCGGCTGGGGTGCAATAGGTTCCGG-AGTGT-TCTCATCACATAT-GA-TTTGCAAGCTAGTTATATGTATGTGGAGGTTT---TGCGAGAGCATTTAACGTAAGACAATCTTTTGCTAG--CTATCCATgg
gi|4 : aaggagatgttcgcgacggattggtgcttgtttCGTGTTCAT--------CGTTT-GAGAA-CAAGATTCAATAAA-AGCAAA-TC-----GTCA-AGTCATGA---A---TT--TAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCCA----TC---GGAAGAT-TA-TGAA--TTTG-CA--AAGTAT--TTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACCGG-GT-GAGGAGAGAC----TGAATATT--ATCGACGGAA-CGT-GA-CGAG-------ATTTA-CTGCATTA--CAC--AAATATC-ACTTGCATTCAG-AGTT-TATAA--CA-CAT-----TTCAACATGTTATT--TTC--AAAAGGGCG----AAAATCAAA-CGTGTGTAAT--C-AATG----CAGCT------C-ATGG---CCCG-A-TGT-TCTGA------AA-GATTTTGCA--CT-----TTTGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTAGAACAAG-TTTTCAATTATGAC----------T---TG-G----TTATTGGA-TCTTG-AAAGAA--ATATTAAGCGGGTTACACATGCGCNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTTAAAAA-AAA----TAAGATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCCAAAAAA----ATTAT-----ATA---ATGTTTTC--C--GACAAT-GAC-TG------TTCT-T--GTGGGG-TGC-CGTT--GGACAGTGATTTTTGAGGACATT---CTCT---TCGGGTT-AC-AAAACAGCTATGACTGaaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttatttttttaaaaaagttagattttgaaagaatatttgtcgtctgaggtagcgagtcgtacaggttcgaggttcctcgatacgaaagcgtggatccaaaaaaatttattatacagatttttccagtaacagaactgatagagttcttgtgggaatgcgcgtttgaacctgattttttaggacattctctaagtcgggttcaaaacagtgatgactgaccttctgtctaattttcagcaatattta
gi|5 : ATAA---A---CCGCTAT------CTGAAA----TTA-------TTATTC-TGAT--TAAC-ATTGGTT-TTATTTACGATGAT---TTTGAGGACGT----TGC--CAT----------GAAGAT-TT-AGAATCTT-GCCA--AATT----TTTTTA-AA-AAACTTCTTTTTAGTA-ATTCGTA--TACTTGTACACTTAG-CCAC-GTGGAGG
gi|6 : gccccatttcgacgacggctcggttattaataagtagcggaggccaatcgaacagacgttatctacctggagttgaccggcgtaattggctattacacatttagaaatacaggaaatgaaaactgttagagttggaaactctacctgttcatcgtttgagacaaattcaatataaatcaattcgtcaagttctgatttatgtatataaaaggcgacgagtacaatgt-CGAG-------ATTTATCTGC-TTTGGCACGAA--AATC-ACTTGCATTCAG-AATT-TAAAAA-AA-AATATATTTTCAACCAGTTATT--TTC--GAA--------------------CGCGTGTAAT--C-AATG----CA--T---TTGC-TCGG---CCCG-A-TGT-TCTGA------AA-GATTTTGCA--TT-----TTTAAAT----CGATATGC-CGCTCGATCATTT----CGAGAC-ATA--TGG-TAGTCCTATCAA-GTGGCTGAGGGACTAAAAG-GACTCTTCGGTACTCACTACTTACCTGTC--AC---AAACCGAAACAAATTTTTCAATTATGGCTTAAAAAAATTAAATATGTTCTTTATTGGA-TCTTG--AAGAA--ATATATAAC-GG
gi|19 : tatcatCAATTATGAC----------T----G-GTTCTTTATTGGA-TCTTG-TAAGAA--A-ATATAAC-AGTTGCACgttgc
gi|2 : AT-TTTTT----T-AAAAAAGTTAGATTTTGAAAGAATATTTGTCGTCTGA-GGT-AGCGAGTCGTACAGGTTCGAGGTTCCTCGATACGAAAG-CGTGGATCC-AAAAAAA--TTTATT----ATACAGATTTTTCCAGT--AACA--GAAC-TGATAGAGTTCT-T--GTGGGAATGCGCG-TTTGAACC-TGATTTTTTAGGACATT---CTCTAAGTCGGGTT--C-AAAACAGTGATGACTGACCTTCTG-TCTAATTTTCAGCAATATTT-A
gi|15 : aaggagatgttcgcgacggattggtgcttgtttcggtctattaataaaggtcaggccggaatcgtaaatgataacagatcgttatctattggcttgatcaagaggctagctccaggtgtttagtttgatcactacacatagacaaataacacaggaaaaaatcatcaaaacgtgtttaggaagttggaaatctacgtgttaatcagcgccgcgatttgagaacagattctataaagagcaaatttgccggttagagtatgaattgtttatgctcgactgtaatgatttatgacatggtgatgcaattgttttatttacgatgatgtgtttgaggacgccatgtatatcatgcaatctgaggaagatatagtgattttgattaactagtttttttagataacttttgttatgcttctcattagaccggagtgagaggagactcgttagatattagattggggacggtcgattgagctgatatacttactgcttcacaactatcactgcattcagaagttctataaagtatcatttcaagttattggttcgaaagaagggggtgtgaaatcacattgtgctcgattacatattgccggctggggtgcaataggttccggagtgttctcatcacatatgatttgcaagctagttatatgtatgtggaggttttgcgagagcatttaacgtaagacaatcttttgctagctatccataaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttTTTCTGTC-GA-GGTTAGCGA--CGT-ATG--TCT-GGCTC-TCGATGGCAAAG-CATTG-TC-----AATTTTTTTATTTTCCATA---ATGTTTTC--CGGGACAAATGACATG------TTCT-TACGCGGGA-TGC
gi|18 : -T--GAACAGTGAGTTTAGAGGACATTCCCCTCT---TCAGGTT-ACAAAAACAGCTATGACTGACTTTATGTTCTAATct
gi|9 : TTTCA--GATATTT-AATTCAGATAATT----ATTCGACT-CA-AAATTA------AGAAGACAAATCA-TACC------------ATCTTTGCG-----GTAGATGAAAGGGGT---T-G-ATATTT----GTGTA-GTT--AA-TTGC-T--ATC-AA-----AACATTCC-G-ATC----TTGGATACCCACTTACCC-AGTGGATG-CA--CT-----T-AGCC-----ACAT-CT-GTCA-ATCAA-AGCCTGA-AC----AATTGT--CT-C-T-TGTGTGAT-TG--ACGTG--CGGTATA-T-GTT---TTTG-ATCT-C----C-AT-----CCAGGT-AAATTTT--A---AG-GG--AGGTGGCT-TA--AAATTGG-GTCTTT
gi|7 : TCA--AATATTTTAGCTCAGGTAATTATCACATTAATT-AA-AAAA--------AAAAAAC----CA-TACCGCAAGCGTGTCTATCTCTGCGCTGCGGTAGATGAAAGGATT---TTGTGCGCGC----TTGCGCGTTGTAACTTGC-TA-ATCAAA-----A-CATTAC-GACTC----T-CGA--------TGTCC-AGT---TG-AC-ACT-----C-AGCT-----ACA--CT-GTCA-ATCAG-AATCTGA-GCCCCTTATTGTTCCT-TCC-TA-TTGAT-TGAAACAAG--CGG--TA-T-GTT---TTTGTATCTTC----T-GT-----CCAGGT-AA--ATT--C---AAGGG--AGGTGGCT-TA--AAAATGG-Gaaa
gi|11 : GCGGTAGATGAGTGGGGT---T-G-ATATAC----ACGTA-GTC---A-CTGGCT--ATT-GACCACCA-CATCAT-A-ATT----T-CGA--------TATCC-AGC---TGTCACACT-----T-C-TC-----AAAGTCT-GTCA-ATCAT-CGTCTGA-AT----TA----------------TTGAT-TG--GCATC--TGG--TA-TAGTT---TGTA-CACTCC----CAG----------GTAAA--TTTTAG---G--GG--AGGTGCCT-TA--AAACTTG-GTTTTgcttt
gi|12 : tcAGATGAA--GAAT---T---GCACGC----GTGCG-GTTGTAA-TTGC-T--ATC--A-----A-CATTAC-G--TC----T-GGAG-------TGTCC-AGT---TGACA-A-T-----A-G-CT-----AAA--CT-GTCA-GTC-G-AATCTGA-GC----TATTGT--CTCT-T-TATTTGAT-TG--ACAAG---GG--TA-T-TGT---TTTG-ATCT-C----T-GT-----C---CG-AA--TTTC-A---A--GGACAGGTGGCT-TA--AAAAAGGTGTGTTcaaa
gi|10 : GATGAA--GAAT---TCG-GTACACATCAGTGCG-GGTG-AA-TTGC-CTAATA-GA-----A-CGTTACCG-CTCAGACT-GGA--------TGTCCTAGT---TGACA-ACTGGAGAT-A-CT-----AAA--TT-GTCG-AATAGCAAT-TGA-GC----TATTGT--CT-C-T-T-TTTGATCTG--GCAAGACCGG--TAGT-GTTGTGTTAG-AGATTC------GT-----CA--GA-AA--TTT--G---AAGGG--AGGTGGCTATAATAAAATGG-GTGGTTaa
gi|13 : AA-ATGC-T--ATC-AA-----AACATTCC-A-ATT----T-AGGA-------TGCCC-AGT---TT----ACT-----T-C-CTCGGATAAG--CTTGTAA-AGTAG-AACCTGA-GC----TATTCC--CT-T-T-TGTTTTAT-TG--AT--G--C----CA-T-TTC---ATTG-ACATACACTAT-AT-----CCAGGT-AA--ATT--GTCAG--GG--AGGTGACT-CA--AAATTGG-GTta
gi|14 : T-----AAA------TCA-ATCAC-A-TCGGACAC----TATTGT--TT-T-T-TGCTTGAT-TG--ACAGG--TGA--TA-T-GTT---ACAG-ATCT-C----T-Gc
gi|16 : agtgggaaatgcccttggctacg----TATTGT--CT-C-T-TGTGTGAT-TG--ACGTG--CGG-----T-GTT---TTTG-ATAT-C----C-GT-----CCAGGT-AAATTTT--A---AG-GG--AGGTGGCC-TA--AAATTGG-GTCTTTgataagtaaattttctgggcgccaccaaaaatcaggtctttaa
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 1 111111111 11 111111 11 11 222222222 11 22222222 1 111111 1111111 111111 1111 2222222 1111 11111 222222222222 11 11 222222 1111 1 2222 11 11 1 11 2222222 1 11 3 1 22222 11 11 1111 1111 1111 22222 111 11 111 11 11 111 33333 1111 111111 11 1 8888888888888888888888 11 111 11 5555555555555555555 11 111 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 222222 2222 11 3333333333333333 111 11 11111 222222 11 2222222 111 111 3 1 11 1111 77777777777777777777777777777777777777777 1 1 33333 111 111 1111 11 11 2222222222 11 11111111 1 11111111 333333333333333333333333 11 11111 11 111
lowQualScore : 8 0 2 1 6 6 5 6 55 88 6 6 6 6 7 3 666666666 8 11 11 444444 8 11 11 8 0 0 888888888 8 11 0 8 2 44444444 4 6 3 6 6 777777 6 1 4444444 666666 2222 1111111 99 6 1 99 6 6 7 1 6 4444 55555 888888888888 6 44 6 11 000000 8 8 7777 0 8 11 11 66 8 0 0 0 8 1 88 1111 33 6 2 00 0 11 6666666 3 8 0 11 0 0 8 0 8 8 0 8 6 00000 11 0 11 1 0 11 7777 0000 3 88 7777 3 44444 8 444 8 8 8 11 8 8 111 11 11 444 00000 8 4 7777 0 222222 8 88 0 5 33 0 8888888888888888888888 33 777 1 33 5555555555555555555 0 5 8 44 3 0 000 6 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 888888 4 1111 3 3 0 8 8 8 88 8 11 0 0 8 8 8 8888888888888888 444 11 8 88888 8 333333 8 11 8 1111111 3 1 444 444 88 99 0 0 2 11 0 8 3 4444 2 33333333333333333333333333333333333333333 0 2 0 88888 3 2 5 111 000 8 5 1 2222 5 99 55 11 0000000000 5 00 44444444 0 5 88888888 888 222222222222222222222222 00 4 4 77 1 4 8888 0 4 4 4 8 4 55 1 55 55 4 4 777 4 00000 4 4 4 55 88 66 333 55 4 55 1 4 1
lowQualScore : . . . . . . . . .. .. . . . . . . ......... . .. .. ...... . .. .. . . . ......... . .. . . . ........ . . . . . ...... . . ....... ...... .... ....... .. . . .. . . . . . .... ..... ............ . .. . .. ...... . . .... . . .. .. .. . . . . . . .. .... .. . . .. . .. ....... . . . .. . . . . . . . . . ..... .. . .. . . .. .... .... . .. .... . ..... . ... . . . .. . . ... .. .. ... ..... . . .... . ...... . .. . . .. . ...................... .. ... . .. ................... . . . .. . . ... . ....................................................................................... . ...... . .... . . . . . . .. . .. . . . . . ................ ... .. . ..... . ...... . .. . ....... . . ... ... .. .. . . . .. . . . .... . ......................................... . . . ..... . . . ... ... . . . .... . .. .. .. .......... . .. ........ . . ........ ... ........................ .. . . .. . . .... . . . . . . .. . .. .. . . ... . ..... . . . .. .. .. ... .. . .. . . .
lowQualScore : 0 8 5 0 7 7 7 7 88 33 7 7 7 7 3 3 333333333 0 66 00 000000 0 00 00 0 8 8 000000000 0 00 8 0 5 22222222 0 7 5 7 7 777777 7 0 3333333 444444 1111 7777777 22 7 7 22 7 7 3 7 7 8888 88888 222222222222 7 22 7 00 888888 0 0 0000 8 0 66 66 22 0 8 6 6 0 0 88 2222 88 5 5 22 0 22 0000000 8 0 6 00 0 8 0 8 0 0 8 0 0 00000 66 8 00 4 8 00 0000 0000 8 88 0000 2 66666 0 000 0 0 0 00 0 0 888 00 00 000 44444 0 6 0000 8 222222 0 88 6 6 88 0 8888888888888888888888 22 000 2 22 0000000000000000000 8 6 0 00 8 8 000 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 888888 0 2222 2 2 8 0 0 0 88 0 00 8 8 0 0 0 0000000000000000 000 00 0 22222 0 000000 0 00 0 7777777 8 0 000 000 88 44 0 0 5 00 8 0 2 2222 5 88888888888888888888888888888888888888888 0 5 0 88888 2 5 7 777 000 9 7 7 1111 7 33 11 99 8888888888 0 99 88888888 0 0 11111111 888 888888888888888888888888 66 4 4 33 1 4 5555 8 0 0 8 0 0 55 0 55 55 0 0 000 0 00000 0 0 6 55 99 55 444 55 0 55 0 4 0
consensus : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--GAACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCAT--------CG-TTTGAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CAC-AAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT-C---GGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT-C-----CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AA-CG--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTA-----------AAAA-----ACCA-TACCGCA-GCGT----ATCTCTGCGCTGCGGTAGATG-AA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGCT--ATC-GA-----A-CATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTG-TCT-CTTGT-TTGAT-TG--ACANG--CGG--TA-T-GTT---TTTG-AT-----C-T-CCGTCCAG--GT-AA--TTTN--AGGG--AGGTGGCT-TA--AAANTGG-GTCTTT
Reference ( family-2645 ) : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAAAGGT-AGGC--GAACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCAT--------CGNTTTGAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-NGAAT-TTGCA--AATTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACGAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTATGC---GGTTTGC-CGCGCGAGCATTT----CAAGACAATC--TCG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTAAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-C-GGTTACACATNCGNTCTCGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAATAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AA-NG--AC-TG------TTCT-T--GTGGGA-TGC-CG-T--GAACAGTGATTTTTNAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTT-TG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTA-----------NAAA-----ACCA-TACCGCA-GCG-----ATCTCTGCGCTGCGGTAGATG-AA-GGAAT---TCG-GCACGC----GTGCG-GTTG-AA-TTGCT--ATC-GA-----A-CATTAC-G-NTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTG-TCT-TTTGT-TTGAT-TG--ACANG--CGG--TA-T-GTT---TTTG-AT-----C-T-CCGTCCAG--GT-AA--TTTG--AGGG--AGGTGGCT-TA--AAANTGG-GTNTTT
gi|1 : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--GAACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GTT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCAT--------CGTTTTGAGAA-CAAGATTCAATA-AA-AGCTAATC-----GTCA-AGTCATAA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAA--TTGCA--AAGTA-A-TTTCTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTCG-CC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGACA-GT-GA-CGAG-------ATTTA-CTGCATTT--CAC---ATATC-ATTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCAAAAA--GGGG----AAAATCAAA-CGTGTGTAATC--ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TA---TGTAT-C---GGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGATTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACAGAAACAAG-TTTTCAATTATGACTAAATG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-G-C-GGTTACACA----------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTT----T-AAATTAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAA-CGTTG-TCC-AAAAA----T--TTA-T----ATA---ATGTTTTCT--GAC-AATGG--AC-TG------TTTT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAT-CAGCTATGACTGACCAT-TG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATTCAT-CGAC-----TCATAATTTTTTTTTA-----------GAAA-----ACCA-TACCGCA-GCGTT---ATCTCTGCGCTGCGGTAGATG-AA--GAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGGT--ATC-AA-----A-CATTAC-G-CTC----T-G-GAGTGTCC-A--------GT---TG-CA-ACT-----C-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTG-TCT-TTTAT-TTGAT-TG--ACAAG--CGG--TA-T-GTT---TTTG-AT-----C-TGCTGTC-----GT-AA--TTTG--A-GG--AGGTGGCT-TA--AAAATGG-GTGTTT
gi|10 : GATG-AA-G-AAT---TCG-GTACACATCAGTGCG-GGTG-AA-TTGCCTAATA-GA-----A-CGTTACCG-CTCAGACT-G-GA-TGTCCTA--------GT---TGACA-ACTGGAGAT-A-C-T-----AAA--TT-GTCG-AATAGCAAT-TGA-GC----TATTG-TCT-CTT-T-TTGATCTG--GCAAGACCGG--TAGT-GTTGTGTTAG-AG-----A-T-TCGT-CAG--A--AA--TTTGA-AGGG--AGGTGGCTATAATAAAATGG-GTGGTT
gi|11 : GCGGTAGATG-AGTGGGGT---T-G-ATATAC----ACGTA-GTC--AC-TGGCT--ATT-GACCACCA-CATCAT-A-ATT----T-C-GA-TATCC-A--------GC---TGTCACACT-----T-C-T-C-----AAAGTCT-GTCA-ATCAT-CGTCTGA-AT----TA--------------TTGAT-TG--GCATC--TGG--TA-TAGTT---TGTA-CA-----C-T-C---CCAG--GT-AAATTTTA--GGGG--AGGTGCCT-TA--AAACTTG-GTTTTta
gi|12 : tcAGATG-AA-G-AAT---T---GCACGC----GTGCG-GTTGTAA-TTGCT--ATC--A-----A-CATTAC-G--TC----T-G-GAGTGTCC-A--------GT---TGACA-A-------T-AGC-T-----AAA--CT-GTCA-GTC-G-AATCTGA-GC----TATTG-TCTCTTTAT-TTGAT-TG--ACAAG---GG--TA-T-TGT---TTTG-AT-----C-T-CTGTCCG------AA--TTTC--AAGGACAGGTGGCT-TA--AAAAAGGTGTGTTcaaa
gi|13 : -AA-ATGCT--ATC-AA-----AACATTCC-A-ATT----TAG-GA-TGCCC-A--------GT---TT----ACT-----T-C-C-TCGGATAAG--CTTGTAA-AGTAG-AACCTGA-GC----TATTC-CCT-TTTGT-TTTAT-TG----ATG--C----CA-T-TTC---ATTG-ACATACAC-T-ATATCCAG--GT-AA--ATTGTCAGGG--AGGTGACT-CA--AAATTGG-GTaa
gi|14 : -----T-A-CGT-----AAA------TCA-ATCAC-A-TCGGACAC----TATTG-TTT-TTTGC-TTGAT-TG--ACAGG--TGA--TA-T-GTT---ACAG-AT-----C-T-CTGGATAA--GTAAA--TTTT--CTGG--GCGCCACC-AA--AAATCAG-GTCTTTc
gi|15 : agtgggaaatgcccttggcTTTCTGTC-GA-GGTTAGCGA--CGT-ATG--TCT-GGCTC-TCGATGGCAAAG-CATTG-TC-----AATTTTT--TTATTTTCCATA---ATGTTTTCCGGGACAAA-TG--ACATG------TTCT-TACGCGGGA-TGC-Caa
gi|16 : ----TATTG-TCT-CTTGT-GTGAT-TG--ACGTG--CGG--T----GTT---TTTG-AT-----A-T-CCGTCCAG--GT-AAATTTTA--AGGG--AGGTGGCC-TA--AAATTGG-GTCTTTt
gi|17 : CCATTTCG---AC-GGT-G-TTATTAAATAAAGGT-AGGC--GAACC-TAATCG---ACAGA-CG-GT-TC-TACC-----TTGACCAGG--Ga
gi|18 : aaagg-T--GAACAGTGAGTTTAGAGGACATTCCCCTCT---TCAGGTT-ACAAAAACAGCTATGACTGACTTTATGTTCTAATgg
gi|19 : CAATTATGACT----G--------------GTTCTTTATTGGA-TCTTG-TAAGAAA-ATATA-A-C-AGTTGCAC
gi|2 : CGGTC---TATTAA-TAAAGGTCAGGCCGGAATCGTAAATGATAACAGATCG-TTATC-TAT-TGGC-TTGATCAAGAGGCTAGCTCC-AGGTGTTTAGTTTG-ATCACT-ACACAT--AGACAAATAACACAGGAAAAAATCATC-AAAACGTG-TTTAGGAAGTTGGAAA-TCTACGTGTTAATCAGCGCCGCGATTTGAGAA-C-AGATTCTATA-AAGAGCAAATTTGCCGGTTAGAGT-ATGA---ATTGTTTATGCTCGACTGTAATGATTTA-------TGA--CATGGTGATG-CAATTG-TT-TTATTTACGATGATGTGTTTGAGGACGCCATGTATATCATGCAATCTGAGGAAGATATAGTGATT-TTG-ATTAACTAGTTTTTTTA-GATAA----C-TTTT-GT-TAT--------GCTTCT-C-ATTAGACCGGAGT-GAGAGGAGACTCGTTAGATATTAGATTGG-GGACG-GTCGATTGAGCTGATATACTTA-CTGC--TT--CAC-AACTATC-AC-TGCATTCAGAAGTTCTATAAAGTATCAT-----TTCAA---GTTATTGGTTCGAAAGAAGGGGGTGTGAAATCACATTGTGCTCGATTACATATTGCCGGCTGGGGTGCAATAGGTTCCGG-AGTGT-TCTCATCACA-TATGATTTGCAAGCTAGTTATATGTATGTGGAGGTTT---TGCGAGAGCATTTAACGTAAGACAATCTTTTGCTAG--CTATCCAT
gi|2 : aaggagatgttcgcgacggattggtgcttgtttAT-TTTTT----T-AAAAAAGTTAGATTTTGAAAGAATATTTGTCGTCTGA-GGT-AGCGAGTCGTACAGGTTCGAGGTTCCTCGATACGAAAG-CGTGGATCC-AAAAA----AATTTATT----ATACAGAT-TTTTCC--AGT-AA-CAGAAC-TGATAGAGTTCT-T--GTGGGAATGCGCG-TTTGAACC-TGATTTTTTAGGACATTC---TCTAAGTCGGGTT--CAAAA-CAGTGATGACTGACCTTCTG-TCTAATTTTCAGCAATATTT-Aaaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttatttttttaaaaaagttagattttgaaagaatatttgtcgtctgaggtagcgagtcgtacaggttcgaggttcctcgatacgaaagcgtggatccaaaaaaatttattatacagatttttccagtaacagaactgatagagttcttgtgggaatgcgcgtttgaacctgattttttaggacattctctaagtcgggttcaaaacagtgatgactgaccttctgtctaattttcagcaatattta
gi|3 : aaggagatgttcgcgacggattggtgcttgtttcggtctattaataaaggtcaggccggaatcgtaaatgataacagatcgttatctattggcttgatcaagaggctagctccaggtgtttagtttgatcactacacatagacaaataacacaggaaaaaatcatcaaaacgtgtttaggaagttggaaatctacgtgttaatcagcgccgcgatttgagaacagattctataaagagcaaatttgccggttagagtatgaattgtttatgctcgactgtaatgatttatgacatggtgatgcaattgttttatttacgatgatgtgtttgaggacgccatgtatatcatgcaatctgaggaagatatagtgattttgattaactagtttttttagataacttttgttatgcttctcattagaccggagtgagaggagactcgttagatattagattggggacggtcgattgagctgatatacttactgcttcacaactatcactgcattcagaagttctataaagtatcatttcaagttattggttcgaaagaagggggtgtgaaatcacattgtgctcgattacatattgccggctggggtgcaataggttccggagtgttctcatcacatatgatttgcaagctagttatatgtatgtggaggttttgcgagagcatttaacgtaagacaatcttttgctagctatccataaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttCCATTT-G-CGACCG-TCG-TTATTAA-T-ACGGT-AGGCG-GAACC-TAATCGA-AACAGA-CGTTTATC-TACCTGGATTTGACCAGG--GCT-GT-CC-A--TGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAGCGTGCTT--AGAAGTT-GAAA-TCTAC-TGTTCAT--------CGG-CTGAGAATCAAGA-TCA--A-AA-TGCTAATC-----GTCA---TCA-GA---A---TTTAT------CTAAAA----ATA--------TA--C-TGAT--TA-C-A-TGATTATTAT---CGA-GAG---TGTGAGGACG-----TATAGCAT----TC---GGAAGAT-TA--GAAT-TTGCA--AATTG-ATTTTCTATAA-AA----CTTTTT--TATA-TTCTAATCGCTTCT-CAATTCGACC-GTG--AAGGAGAGAC----TGAATATT--AT-GACGGACGAGT-G--CGAT-------A--TA-CTGCATTT--CAC-AAATATCTACTTGCATTCAG-AGTT-TATAAA-CAGCAT-----TTCAACATG-TATT--TC--AAAG--GGGG----AAAATC-AA-CTTGTG-AATCA-ATG----CAAGC---G-GC-ATGG---CCCGAA-TGTGTCTGA--A-ATGA---TTTGCA--CT--TT---TGTATAC---GGTTGGCGCGCACGAG-ATTT----CAAGA-AA-----CG-TA-T----------TGATTGA--CACTGCACGCGA----------------------CTGTCAAACGAAAAACTAAAACAAG--TTTCAATTAT-ACT---TG--------------GTTC--TATTGGATTCTTGAAAAGAAACATATATA-CGGGTTACACATCTCGTCTCGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGATATTTTT----TAAAAAAAG----A--TTGAAAGAAAA-TTTCTG-C-GAGGGT-A-CGA-TC-T-CAG--TCCAGGC-CCTCGATGACAAAGCCGTTG-TCC-AAAAA---------ATT----ATA---ATGTTTTCC--GAC-AA-AT--AC-TG------TTTTCT--GTGGCT-TGC-T--T--G-ACAGTTATTTTTTA-GACGTTC---TCT---TCGGGTTAACAAAT-CA--CATGA-TAGCCTTGGG-T---ATTTTCA--AATA-TT-AGTTC-CGTAATT-A--CGAC-----T--ACA-------TTAATTTTGTTTTTTAAA-----ACCATTACCGCA-GCG-----ATCTC-GCGCTTCGTT-GAT---A-AGAATTCCTCG-GCA-GC----GT-CG-GTTG-A---TG-T--ATCAAA-----A-CATTAC-G-CTC----C-GAGG-TGTCC-A--------GT---TG-C--ACT-----CAA-C-T-----AAA--CT--TCATATCA--AAT-TGA-GC----TA-TG-TC--CTTATATTGAT-T---ACAAT--C-G--TA-T-G-T---TTTG-AT-----C-T-CTGTCCAGCCGA-AA--TTTC--AGGT--ATGTGGCT-CA--A
gi|4 : CGTGTTCAT--------CG-TTTGAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCCA----TC---GGAAGAT-TA-TGAAT-TTGCA--AAGTA--TTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGAAC-GT-GA-CGAG-------ATTTA-CTGCATTA--CAC-AAATATC-ACTTGCATTCAG-AGTT-TAT-AA-CA-CAT-----TTCAACATGTTATT--TTCAAAAG--GGCG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT------C-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT-C---GGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTAGAACAAG-TTTTCAATTATGACT---TG--------------G----TTATTGGA-TCTTG-AAAGAAATAT-TA-AGCGGGTTACACATGCGC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTTAAAAA-AAATAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCCAAAAAA----A--TTA-T----ATA---ATGTTTTCC--GAC-AA-TG--AC-TG------TTCT-T--GTGGGG-TGC-CGTT--GGACAGTGATTTTTGAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTG
gi|5 : GCCCCATTTCGACGACGGCTCGGTTATTAA-TAA--GT-AGCG--GAGGC-CAATCGA-A-CAGA-CG-TTATC-TACCTGGAGTTGACC----------------GGCGT-AA--TTGGCT-A-TTACACATTTAGA--AATA-CA--GGAAA-------TGAAAAC-TG-TT--AG-AGTTGGAAACTCTACCTGTTCAT--------CG-TTTGAG-A-CAA-ATTCAATATAA-ATCAATTC-----GTCA-AGTTCTGATTTA---TGTAT------ATAAAA----
gi|5 : TAT------CTGAAA----TTA-------TTATTC-TGAT--TAAC-ATTGGTT-TTATTTACGATGAT---TTTGAGGACGT----TGC--CAT----------GAAGAT-TT-AGAATCTTGCC--AA--A-TTTTTTTA-AA-AAACTTCTTTTTAGTA-ATTCGTA--TACTTGTACACTTAG-CC-ACGTGGAGGggcgacgagtacaatgtataaaccgctatctgaaattattattctgattaacattggttttatttacgatgattttgaggacgttgccatgaagatttagaatcttgccaaatttttttaaaaaacttctttttagtaattcgtatacttgtacacttagccacgtggagg
gi|6 : gccccatttcgacgacggctcggttattaataagtagcggaggccaatcgaacagacgttatctacctggagttgaccggcgtaattggctattacacatttagaaatacaggaaatgaaaactgttagagttggaaactctacctgttcatcgtttgagacaaattcaatataaatcaattcgtcaagttctgatttatgtatataaaaggcgacgagtacaatgtataaaccgc-CGAG-------ATTTATCTGC-TTTGGCACGAAA-ATC-ACTTGCATTCAG-AATT-TAAAAA-AA-AATATATTTTCAACCAGTTATT--TTCGAA----------------------CGCGTGTAATCA-ATG----CA--T---TTGC-TCGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--TT--TT---TAAAT-C---GATATGC-CGCTCGATCATTT----CGAGAC-ATA--TGG-TAGTCCTATCAA-GTGGCTGAGGGACTAAAAG-GACTCTTCGGTACTCACTACTTACCTGTC--AC---AAACCGAAACAAATTTTTCAATTATGGCT---TAAAAAAATTAAATATGTTCTTTATTGGA-TCTTG--AAGAAATATATA-A-C-GG
gi|7 : tatcatTCA--AATATTTTAGCTCAGGTAATT-AT-C-ACATTAATTAAAA-------AAA-----------AAAA-----ACCA-TACCGCAAGCGTGTCTATCTCTGCGCTGCGGTAGATGAAA-GGATT---TTGTGCGCGC----TTGCGCGTTGTAACTTGCTA-ATCAAA-----A-CATTAC-GACTC----T-C-GA-TGTCC-A--------GT---TG-AC-ACT-----C-AGC-T-----ACA--CT-GTCA-ATCAG-AATCTGA-GCCCCTTATTGTTCC-TTCCTATTGAT-TGAAACAAG--CGG--TA-T-GTT---TTTGTAT-----CTT-CTGTCCAG--GTAAA--TTCA--AGGG--AGGTGGCT-TA--AAAATGG-GGCTTTgttgc
gi|8 : CCATTTCG-CGAC-GGTTG-TT-TTA--TAATGGT-AGAG--GAACT---ATCGA-AACAGA-CG-CTATCTTACC-GGA-TTGACCAGG--GGG-GC-CCAAGATG-TAA--TTG--T-G-T-ACACAT--AGA--AATA-C-CAAG-AA-------T-AACA-GTG-TT--TGAAGTTGGAAA-TCTACGTGT--AT--------CGTTTTCAGAG-AAAGATTC-ATA-AA-AGCAAAT------GTCA-AATCATGA---A---TTTAT------CTAAAA----TTATACGTGTTTA--C-TG-T--TT-C-A-TGAAT-TTA-TTACGATGA----TTTGAGGACGT----ATTAGC-------C------AGAT-GA-AGAAT-T
gi|9 : ggTTTCA--GATATTT-AATTCAGATAATT-ATTCGAC-----TCAAAA-------TTA-----------AGAAGACAAATCA-TACC------------ATCTTTGCG-----GTAGATG-AA-AGGGG---TTG-ATATTT----GTGTA-GTT--AA-TTGCT--ATC-AA-----AACATTCC-G-ATC----TTG-GA-TACCC-ACTTACCCAGTGGATG-CA--CT-----T-AGC-C-----ACAT-CT-GTCA-ATCAA-AGCCTGA-AC----AATTG-TCT-CTTGT-GTGAT-TG--ACGTG--CGGTATA-T-GTT---TTTG-AT-----C-T-CCATCCAG--GT-AAATTTTA--AGGG--AGGTGGCT-TA--AAATTGG-GTCTTTg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 1 111111111 11 111111 11 11 222222222 11 333333333 111 111111 111 111 111111 2222222222222222 11 1111 11111 222222222 11 11 111 1111 1 2222 11 11 1 11 2222222 1 11 1 22222 11 11 1111 1111 1111 22222 111 11 111 11 11 111 2222 1111 1111 11 1 8888888888888888888888 11 111 11 5555555555555555555 11 111 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 2222 11 3333333333333333 111 11 22222 222222 11 1111 111 111 1 1 11 1111 66666666666666666666666666666666666666666 1 1 444444 111 111 1111 11 11 2222222222 11 11111111 1 11111111 333333333333333333333333 11 1111 11111 22
lowQualScore : 8 0 2 1 6 6 0 6 99 6 88 6 6 6 6 7 3 666666666 8 11 11 444444 8 11 11 8 0 0 888888888 8 11 0 8 2 333333333 111 6 3 6 6 777777 6 1 111 000 666666 6666666666666666 6 1 99 6 44 1 6 4444 55555 666666666 8 44 88 11 8 777 8 8 7777 0 8 11 11 66 8 0 0 0 8 1 88 1111 33 6 2 00 0 11 6666666 3 8 0 11 3 8 0 8 8 0 8 6 00000 11 0 11 1 0 11 7777 0000 3 88 7777 3 44444 8 444 8 8 8 11 8 8 111 11 11 444 5555 8 7777 0 1111 8 88 0 5 33 0 8888888888888888888888 33 777 1 33 5555555555555555555 0 5 8 44 3 0 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 1 1111 3 3 0 8 8 8 88 8 11 0 0 8 8 8 8888888888888888 444 11 8 11111 8 333333 8 11 8 8 9999 0 444 444 88 99 0 0 2 11 0 8 3 4444 2 77777777777777777777777777777777777777777 0 2 0 000000 3 2 5 111 000 8 5 1 2222 5 66 55 11 0000000000 5 00 44444444 0 5 88888888 888 222222222222222222222222 00 4 4 77 1 4 8888 4 0000 4 55 1 55 55 4 4 777 4 00000 4 4 55 44 44 4 55 55 4 55 1
lowQualScore : . . . . . . . . .. . .. . . . . . . ......... . .. .. ...... . .. .. . . . ......... . .. . . . ......... ... . . . . ...... . . ... ... ...... ................ . . .. . .. . . .... ..... ......... . .. .. .. . ... . . .... . . .. .. .. . . . . . . .. .... .. . . .. . .. ....... . . . .. . . . . . . . . ..... .. . .. . . .. .... .... . .. .... . ..... . ... . . . .. . . ... .. .. ... .... . .... . .... . .. . . .. . ...................... .. ... . .. ................... . . . .. . . ... . .......................................................................................... . ...... . .... . . . . . . .. . .. . . . . . ................ ... .. . ..... . ...... . .. . . .... . ... ... .. .. . . . .. . . . .... . ......................................... . . . ...... . . . ... ... . . . .... . .. .. .. .......... . .. ........ . . ........ ... ........................ .. . . .. . . .... . .... . .. . .. .. . . ... . ..... . . .. .. .. . .. .. . .. .
lowQualScore : 0 8 5 0 7 7 0 7 22 7 33 7 7 7 7 3 3 333333333 0 66 00 000000 0 00 00 0 8 8 000000000 0 00 8 0 5 333333333 777 7 5 7 7 777777 7 0 777 000 444444 2222222222222222 7 7 22 7 00 7 7 8888 88888 888888888 0 00 88 00 8 666 0 0 0000 8 0 66 66 22 0 8 6 6 0 0 88 2222 88 5 5 22 0 22 0000000 8 0 6 00 8 0 8 0 0 8 0 0 00000 66 8 00 4 8 00 0000 0000 8 88 0000 2 66666 0 000 0 0 0 00 0 0 888 00 00 000 0000 0 0000 8 8888 0 88 6 6 88 0 8888888888888888888888 22 000 2 22 0000000000000000000 8 6 0 00 8 8 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 0 2222 2 2 8 0 0 0 88 0 00 8 8 0 0 0 0000000000000000 000 00 0 88888 0 000000 0 00 0 8 8888 6 000 000 88 44 8 0 5 00 8 0 2 2222 5 55555555555555555555555555555555555555555 0 5 0 555555 2 5 7 777 000 9 7 7 1111 7 11 11 99 8888888888 0 66 88888888 0 0 11111111 888 888888888888888888888888 66 4 4 33 1 4 5555 0 7777 0 55 0 55 55 0 0 000 0 00000 0 0 55 99 55 0 00 55 0 55 0
consensus : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATCG---------TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATG-AA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGCT--ATC-GA-----A-CATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT--TTGAT-TG--ACANG--CGG--TA-T-GTT---TTTG-AT-----C-T-CCGTCCAG--GT-AAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
Reference ( family-2645 ) : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATCG---------TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATG-AA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGCT--ATC-GA-----A-CATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT--TTGAT-TG--ACANG--CGG--TA-T-GTT---TTTG-AT-----C-T-CCGTCCAG--GT-AA--TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
gi|1 : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GTT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATCGT--------TTT---GAGAA-CAAGATTCAATA-AA-AGCTAATC-----GTCA-AGTCATAA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAA--TTGCA--AAGTA-A-TTTCTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTCG-CC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGACA-GT-GA-CGAG-------ATTTA-CTGCATTT--CAC--ATATC-ATTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCAAAAA--GGGG----AAAATCAAA-CGTGTGTAATC--ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TA---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGATTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACAGAAACAAG-TTTTCAATTATGACTAAATG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-G-C-GGTTACACA-------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTT----T-AAATTAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAA-CGTTG-TCC-AAAAA----T--TTA-T----ATA---ATGTTTTCT--GAC-AATGG--AC-TG------TTTT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAT-CAGCTATGACTGACCAT-TG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATTCAT-CGAC-----TCATAATTTTTTTTTAG-----------AAA-----ACCA-TACCGCA-GCGTT----ATCTCTGCGCTGCGGTAGATG-AA--GAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGGT--ATC-AA-----A-CATTAC-G-CTC----T-G-GAGTGTCC-A--------GT---TG-CA-ACT-----C-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTT-TTAT--TTGAT-TG--ACAAG--CGG--TA-T-GTT---TTTG-AT-----C-TGCTGTC-----GT-AA--TT-T-GA-GG--AGGTGGCT-TA--AAAATGGGTGTTT
gi|10 : GATG-AA-G-AAT---TCG-GTACACATCAGTGCG-GGTG-AA-TTGCCTAATA-GA-----A-CGTTACCG-CTCAGACT-G-GA-TGTCCTA--------GT---TGACA-ACTGGAGAT-A-C-T-----AAA--TT-GTCG-AATAGCAAT-TGA-GC----TATTGTCTC-TT-T--TTGATCTG--GCAAGACCGG--TAGT-GTTGTGTTAG-AG-----A-T-TCGT-CAG--A--AA--TT-TGAAGGG--AGGTGGCTATAATAAAATGGGT
gi|11 : GCGGTAGATG-AGTGGGGT---T-G-ATATAC----ACGTA-GTC--AC-TGGCT--ATT-GACCACCA-CATCAT-A-ATT----T-C-GA-TATCC-A--------GC---TGTCACACT-----T-C-T-C-----AAAGTCT-GTCA-ATCAT-CGTCTGA-AT----TATTG--------------AT-TG--GCATC--TGG--TA-TAGTT---TGTA-CA-----C-T-CC---CAG--GT-AAATTT-T-AGGGG--AGGTGCCT-TA--AAACTTGGTTTTggttta
gi|12 : tcAGATG-AA-G-AAT---T---GCACGC----GTGCG-GTTGTAA-TTGCT--ATC--A-----A-CATTAC-G--TC----T-G-GAGTGTCC-A--------GT---TGACA-A-------T-AGC-T-----AAA--CT-GTCA-GTC-G-AATCTGA-GC----TATTGTCTCTTTAT--TTGAT-TG--ACAAG---GG--TA-T-TGT---TTTG-AT-----C-T-CTGTCCG------AA--TT-T-CAAGGACAGGTGGCT-TA--AAAAAGGcaaa
gi|13 : AA-ATGCT--ATC-AA-----AACATTCC-A-ATT----TAG-GA-TGCCC-A--------GT---TT----ACT-----T-C-C-TCGGATAAG--CTTGTAA-AGTAG-AACCTGA-GC----TATTCCCTT-TTGT--TTTAT-TG--A--TG--C----CA-T-TTC---ATTG-ACATACAC-T-ATATCCAG--GT-AAA-TTGT-CAGGG--AGGTGACT-CA--AAATTGGGTCtgtgttaa
gi|14 : -----T-A-CGT-----AAA------TCA-ATCAC-A-TCGGACAC----TATTGTTTT-TTGC--TTGAT-TG--ACAGG--TGA--TA-T-GTT---ACAG-AT-----C-T-CTGGATAA--GT-AAA-TT-T-TCTGG--GCGCCACC-AA--AAATCAGGTCTTT
gi|15 : agtgggaaatgcccttggcTTTCTGTC-GA-GGTTAGCGA--CGT-ATG--TCT-GGCTC-TCGATGGCAAAG-CATTG-TC-----AATTTTT--TTATTTTCCATA---ATGTTTTCCGGGACAAAT-G--ACATG------TTCT-TACGCGGGA-TGCaa
gi|16 : ----TATTGTCTC-TTGT--GTGAT-TG--ACGTG--CGG-----T-GTT---TTTG-AT-----A-T-CCGTCCAG--GT-AAATTT-T-AAGGG--AGGTGGCC-TA--AAATTGGGTCTTTct
gi|17 : CCATTTCG---AC-GGT-G-TTATTAAATAAAGGT-AGGC--G-AACC-TAATCG---ACAGA-CG-GT-TC-TACC-----TTGACCAGG--Ga
gi|18 : aaagg-T--GAACAGTGAGTTTAGAGGACATTCCCCTCT---TCAGGTT-ACAAAAACAGCTATGACTGACTTTATGTTCTAATgg
gi|19 : CAATTATGACT----G--------------GTTCTTTATTGGA-TCTTG-TAAGAAA-ATATA-A-C-AGTTGCAC
gi|2 : CGGTC---TATTAA-TAAAGGTCAGGCCGG-AATCGTAAATGATAACAGATCG-TTATC-TAT-TGGC-TTGATCAAGAGGCTAGCTCC-AGGTGTTTAGTTTG-ATCACT-ACACAT--AGACAAATAACACAGGAAAAAATCATC-AAAACGTG-TTTAGGAAGTTGGAAA-TCTACGTGTTAATCAGCGCCGCGATTT---GAGAA-CA-GATTCTATA-AAGAGCAAATTTGCCGGTTAGAGT-ATGA---ATTGTTTATGCTCGACTGTAATGA-------TTTATGA--CATGGTGATG-CAATTG-TT-TTATTTACGATGATGTGTTTGAGGACGCCATGTATATCATGCAATCTGAGGAAGATATAGTGATT-TTG-ATTAACTAGTTTTTTTA-GATAA----C-TTTT-GT-TAT--------GCTTCT-C-ATTAGACCGGAGT-GAGAGGAGACTCGTTAGATATTAGATTGG-GGACG-GTCGATTGAGCTGATATACTTA-CTGC--TT--CACAACTATC-AC-TGCATTCAGAAGTTCTATAAAGTATCAT-----TTCAA---GTTATTGGTTCGAAAGAAGGGGGTGTGAAATCACATTGTGCTCGATTACATATTGCCGGCTGGGGTGCAATAGGTTCCGG-AGTGT-TCTCATCACA-TATGATTTGCAAGCTAGTTATATGTATGTGGAGGTTT---TGCGAGAGCATTTAACGTAAGACAATCTTTTGCTAG--CTATCCAT
gi|2 : aaggagatgttcgcgacggattggtgcttgtttAT-TTTTT----T-AAAAAAGTTAGATTTTGAAAGAATATTTGTCGTCTGA-GGT-AGCGAGTCGTACAGGTTCGAGGTTCCTCGATACGAAAG-CGTGGATCC-AAAAA----AATTTATT----ATACAGAT-TTTTCC--AGT-AAC-AGAAC-TGATAGAGTTCT-T--GTGGGAATGCGCG-TTTGAACC-TGATTTTTTAGGACATTC---TCTAAGTCGGGTT--CAAAA-CAGTGATGACTGACCTTCTG-TCTAATTTTCAGCAATATTT-Aaaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttatttttttaaaaaagttagattttgaaagaatatttgtcgtctgaggtagcgagtcgtacaggttcgaggttcctcgatacgaaagcgtggatccaaaaaaatttattatacagatttttccagtaacagaactgatagagttcttgtgggaatgcgcgtttgaacctgattttttaggacattctctaagtcgggttcaaaacagtgatgactgaccttctgtctaattttcagcaatattta
gi|3 : aaggagatgttcgcgacggattggtgcttgtttcggtctattaataaaggtcaggccggaatcgtaaatgataacagatcgttatctattggcttgatcaagaggctagctccaggtgtttagtttgatcactacacatagacaaataacacaggaaaaaatcatcaaaacgtgtttaggaagttggaaatctacgtgttaatcagcgccgcgatttgagaacagattctataaagagcaaatttgccggttagagtatgaattgtttatgctcgactgtaatgatttatgacatggtgatgcaattgttttatttacgatgatgtgtttgaggacgccatgtatatcatgcaatctgaggaagatatagtgattttgattaactagtttttttagataacttttgttatgcttctcattagaccggagtgagaggagactcgttagatattagattggggacggtcgattgagctgatatacttactgcttcacaactatcactgcattcagaagttctataaagtatcatttcaagttattggttcgaaagaagggggtgtgaaatcacattgtgctcgattacatattgccggctggggtgcaataggttccggagtgttctcatcacatatgatttgcaagctagttatatgtatgtggaggttttgcgagagcatttaacgtaagacaatcttttgctagctatccataaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttCCATTT-G-CGACCG-TCG-TTATTAA-TAC-GGT-AGGC--GGAACC-TAATCGA-AACAGA-CGTTTATC-TACCTGGATTTGACCAGG--GCT-GT-CC-A--TGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAGCGTGCTT--AGAAGTT-GAAA-TCTAC-TGTTCATCG---------GCT---GAGAATCAAGA-TCA--A-AA-TGCTAATC-----GTCA---TCA-GA---ATT---TAT------CTAAAAATA--------T----A--C-TGAT--TA-CA--TGATTATTAT---CGA-GAG---TGTGAGGACG-----TATAGCAT----TC---GGAAGAT-TA--GAAT-TTGCA--AATTG-ATTTTCTATAA-AA----CTTTTT--TATA-TTCTAATCGCTTCT-CAATTCGACC-GTG--AAGGAGAGAC----TGAATATT--AT-GACGGACGAGT-G--CGAT-------A--TA-CTGCATTT--CACAAATATCTACTTGCATTCAG-AGTT-TATAAA-CAGCAT-----TTCAACATG-TATT--TC--AAAG--GGGG----AAAATC-AA-CTTGTG-AATCA-ATG----CAAGC---G-GC-ATGG---CCCGAA-TGTGTCTGA--A-ATGA---TTTGCA--CT--TT---TGTATA---CGGTTGGCGCGCACGAG-ATTT----CAAGA-AA-----CG-TA-T----------TGATTGA--CACTGCACGCGA----------------------CTGTCAAACGAAAAACTAAAACAAG--TTTCAATTAT-ACT---TG--------------GTTC--TATTGGATTCTTGAAAAGAAACATATATA-CGGGTTACACAT---CTCGTCTCGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGATATTTTT----TAAAAAAAG----A--TTGAAAGAAAA-TTTCTG-C-GAGGGT-A-CGA-TC-T-CAG--TCCAGGC-CCTCGATGACAAAGCCGTTG-TCC-AAAAA---------ATT----ATA---ATGTTTTCC--GAC-AAA-T--AC-TG------TTTTCT--GTGGCT-TGCTTG------ACAGTTATTTTTTA-GACGTTC---TCT---TCGGGTTAACAAAT-CA--CATGA-TAGCCTTGGG-T---ATTTTCA--AATA-TT-AGTTC-CGTAATT-A--CGAC-----T--ACA-------TTAATTTTGTTTTTTAAA-----ACCATTACCGCA-GCG------ATCTC-GCGCTTCGTT-GAT---A-AGAATTCCTCG-GCA-GC----GT-CG-GTTG-A---TG-T--ATCAAA-----A-CATTAC-G-CTC----C-GAGG-TGTCC-A--------GT---TG-C--ACT-----CAA-C-T-----AAA--CT--TCATATCA--AAT-TGA-GC----TA-TGTC-C-TTATA-TTGAT-T---ACAAT--C-G--TA-T-G-T---TTTG-AT-----C-T-CTGTCCAGCCGA-AA--TT-T-CAGGT--ATGTGGCT-CA--A
gi|4 : CGTGTTCATCG---------TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCCA----TC---GGAAGAT-TA-TGAAT-TTGCA--AAGTA--TTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGAAC-GT-GA-CGAG-------ATTTA-CTGCATTA--CACAAATATC-ACTTGCATTCAG-AGTT-TAT-AA-CA-CAT-----TTCAACATGTTATT--TTCAAAAG--GGCG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT------C-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTAGAACAAG-TTTTCAATTATGACT---TG--------------G----TTATTGGA-TCTTG-AAAGAAATAT-TA-AGCGGGTTACACATGCGC------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTTAAAAA-AAATAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCCAAAAAA----A--TTA-T----ATA---ATGTTTTCC--GAC-AAT-G--AC-TG------TTCT-T--GTGGGG-TGC-CGTT--GGACAGTGATTTTTGAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTG
gi|5 : GCCCCATTTCGACGACGGCTCGGTTATTAA-TAA-G-T-AGCG--G-AGGC-CAATCGA-A-CAGA-CG-TTATC-TACCTGGAGTTGACC----------------GGCGT-AA--TTGGCT-A-TTACACATTTAGA--AATA-CA--GGAAA-------TGAAAAC-TG-TT--AGA-GTTGGAAACTCTACCTGTTCATCG---------TTT---GAG-A-CAA-ATTCAATATAA-ATCAATTC-----GTCA-AGTTCTGATTTATG---TAT------ATAAAA
gi|5 : ---TAT------CTGAAATTA-------TT----ATTC-TGAT--TAACA-TTGGTT-TTATTTACGATGAT---TTTGAGGACGT----TGC--CAT----------GAAGAT-TT-AGAATCTTGCC--AA--A-TTTTTTTA-AA-AAACTTCTTTTTAGTA-ATTCGTA--TACTTGTACACTTAG-CC-ACGTGGAGGggcgacgagtacaatgtataaaccgctatctgaaattattattctgattaacattggttttatttacgatgattttgaggacgttgccatgaagatttagaatcttgccaaatttttttaaaaaacttctttttagtaattcgtatacttgtacacttagccacgtggagg
gi|6 : gccccatttcgacgacggctcggttattaataagtagcggaggccaatcgaacagacgttatctacctggagttgaccggcgtaattggctattacacatttagaaatacaggaaatgaaaactgttagagttggaaactctacctgttcatcgtttgagacaaattcaatataaatcaattcgtcaagttctgatttatgtatataaaaggcgacgagtacaatgtataaaccgc-CGAG-------ATTTATCTGC-TTTGGCACGAAAATC-ACTTGCATTCAG-AATT-TAAAAA-AA-AATATATTTTCAACCAGTTATT--TTCGAA----------------------CGCGTGTAATCA-ATG----CA--T---TTGC-TCGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--TT--TT---TAAAT----CGATATGC-CGCTCGATCATTT----CGAGAC-ATA--TGG-TAGTCCTATCAA-GTGGCTGAGGGACTAAAAG-GACTCTTCGGTACTCACTACTTACCTGTC--AC---AAACCGAAACAAATTTTTCAATTATGGCT---TAAAAAAATTAAATATGTTCTTTATTGGA-TCTTG--AAGAAATATATA-A-CGGGTTGC
gi|7 : tatcatTCA--AATATTTTAGCTCAGGTAATT-AT-C-ACATTAATTAAAA-------AAAA-----------AAA-----ACCA-TACCGCAAGCG-TGTCTATCTCTGCGCTGCGGTAGATGAAA-GGATT---TTGTGCGCGC----TTGCGCGTTGTAACTTGCTA-ATCAAA-----A-CATTAC-GACTC----T-C-GA-TGTCC-A--------GT---TG-AC-ACT-----C-AGC-T-----ACA--CT-GTCA-ATCAG-AATCTGA-GCCCCTTATTGTTCC-TTCCTATTGAT-TGAAACAAG--CGG--TA-T-GTT---TTTGTAT-----CTT-CTGTCCAG--GTAAA--TT-C-AAGGG--AGGTGGCT-TA--AAAATGGGGCTTT
gi|8 : CCATTTCG-CGAC-GGTTG-TT-TTA--TAATGGT-AGAG--G-AACT---ATCGA-AACAGA-CG-CTATCTTACC-GGA-TTGACCAGG--GGG-GC-CCAAGATG-TAA--TTG--T-G-T-ACACAT--AGA--AATA-C-CAAG-AA-------T-AACA-GTG-TT--TGAAGTTGGAAA-TCTACGTGT--ATCG---------TTTTCAGAGA---AAGATTC-ATA-AA-AGCAAAT------GTCA-AATCATGA---ATT---TAT------CTAAAATTATACGTGTTT----A--C-TG-T--TT-CA--TGAAT-TTA-TTACGATGA----TTTGAGGACGT----ATTAGC
gi|9 : ggTTTCA--GATATTT-AATTCAGATAATT-ATTCGAC-----TCAAAA-------TTAA-----------GAAGACAAATCA-TACC-------------ATCTTTGCG-----GTAGATG-AA-AGGGG---TTG-ATATTT----GTGTA-GTT--AA-TTGCT--ATC-AA-----AACATTCC-G-ATC----TTG-GA-TACCC-ACTTACCCAGTGGATG-CA--CT-----T-AGC-C-----ACAT-CT-GTCA-ATCAA-AGCCTGA-AC----AATTGTCTC-TTGT--GTGAT-TG--ACGTG--CGGTATA-T-GTT---TTTG-AT-----C-T-CCATCCAG--GT-AAATTT-T-AAGGG--AGGTGGCT-TA--AAATTGGGTCTTTcagatgaagaattg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 1 111111111 11 111111 11 11 222222222 11 333333333 111 111111 111 111 111111 2222222222222222 11 1111 11111 222222222 11 11 111 1111 1 2222 11 11 1 11 2222222 1 11 1 22222 11 11 1111 1111 1111 22222 111 11 111 11 11 111 2222 1111 1111 11 1 8888888888888888888888 11 111 11 5555555555555555555 11 111 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 2222 11 3333333333333333 111 11 22222 222222 11 1111 111 111 1 1 11 1111 66666666666666666666666666666666666666666 1 1 444444 111 111 1111 11 2222222222 11 11111111 1 11111111 333333333333333333333333 11 11111
lowQualScore : 8 0 2 1 6 6 0 6 99 6 88 6 6 6 6 7 3 666666666 8 11 11 444444 8 11 11 8 0 0 888888888 8 11 0 8 2 333333333 111 6 3 6 6 777777 6 1 111 000 666666 6666666666666666 6 1 99 6 44 1 6 4444 55555 666666666 8 44 88 11 8 777 8 8 7777 0 8 11 11 66 8 0 0 0 8 1 88 1111 33 6 2 00 0 11 6666666 3 8 0 11 3 8 0 8 8 0 8 6 00000 11 0 11 1 0 11 7777 0000 3 88 7777 3 44444 8 444 8 8 8 11 8 8 111 11 11 444 5555 8 7777 0 1111 8 88 0 5 33 0 8888888888888888888888 33 777 1 33 5555555555555555555 0 5 8 44 3 0 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 1 1111 3 3 0 8 8 8 88 8 11 0 0 8 8 8 8888888888888888 444 11 8 11111 8 333333 8 11 8 8 9999 0 444 444 88 99 0 0 2 11 0 8 3 4444 2 77777777777777777777777777777777777777777 0 2 0 000000 3 2 777 000 8 5 1 2222 5 66 55 66 5 0000000000 5 00 44444444 0 5 88888888 888 222222222222222222222222 00 4 4 77 1 4 8888 4 888888 4 55 1 55 55 4 4 777 4 00000 4 4 55 0 8 4 55 99 4 55 1
lowQualScore : . . . . . . . . .. . .. . . . . . . ......... . .. .. ...... . .. .. . . . ......... . .. . . . ......... ... . . . . ...... . . ... ... ...... ................ . . .. . .. . . .... ..... ......... . .. .. .. . ... . . .... . . .. .. .. . . . . . . .. .... .. . . .. . .. ....... . . . .. . . . . . . . . ..... .. . .. . . .. .... .... . .. .... . ..... . ... . . . .. . . ... .. .. ... .... . .... . .... . .. . . .. . ...................... .. ... . .. ................... . . . .. . . ... . .......................................................................................... . ...... . .... . . . . . . .. . .. . . . . . ................ ... .. . ..... . ...... . .. . . .... . ... ... .. .. . . . .. . . . .... . ......................................... . . . ...... . . ... ... . . . .... . .. .. .. . .......... . .. ........ . . ........ ... ........................ .. . . .. . . .... . ...... . .. . .. .. . . ... . ..... . . .. . . . .. .. . .. .
lowQualScore : 0 8 5 0 7 7 0 7 22 7 33 7 7 7 7 3 3 333333333 0 66 00 000000 0 00 00 0 8 8 000000000 0 00 8 0 5 333333333 777 7 5 7 7 777777 7 0 777 000 444444 2222222222222222 7 7 22 7 00 7 7 8888 88888 888888888 0 00 88 00 8 666 0 0 0000 8 0 66 66 22 0 8 6 6 0 0 88 2222 88 5 5 22 0 22 0000000 8 0 6 00 8 0 8 0 0 8 0 0 00000 66 8 00 4 8 00 0000 0000 8 88 0000 2 66666 0 000 0 0 0 00 0 0 888 00 00 000 0000 0 0000 8 8888 0 88 6 6 88 0 8888888888888888888888 22 000 2 22 0000000000000000000 8 6 0 00 8 8 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 0 2222 2 2 8 0 0 0 88 0 00 8 8 0 0 0 0000000000000000 000 00 0 88888 0 000000 0 00 0 8 8888 6 000 000 88 44 8 0 5 00 8 0 2 2222 5 55555555555555555555555555555555555555555 0 5 0 555555 2 5 444 000 9 7 7 1111 7 11 11 99 0 8888888888 0 66 88888888 0 0 11111111 888 888888888888888888888888 66 4 4 33 1 4 5555 0 999999 0 55 0 55 55 0 0 000 0 00000 0 0 55 7 0 0 00 55 0 55 0
consensus : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATCG---------TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGCT--A-TC-GA-----AACATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
Reference ( family-2645 ) : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATCG---------TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGCT--A-TC-GA-----A-CATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
gi|1 : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GTT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATCGT--------TTT---GAGAA-CAAGATTCAATA-AA-AGCTAATC-----GTCA-AGTCATAA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAA--TTGCA--AAGTA-A-TTTCTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTCG-CC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGACA-GT-GA-CGAG-------ATTTA-CTGCATTT--CAC--ATATC-ATTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCAAAAA--GGGG----AAAATCAAA-CGTGTGTAATC--ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TA---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGATTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACAGAAACAAG-TTTTCAATTATGACTAAATG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-G-C-GGTTACACA-------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTT----T-AAATTAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAA-CGTTG-TCC-AAAAA----T--TTA-T----ATA---ATGTTTTCT--GAC-AATGG--AC-TG------TTTT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAT-CAGCTATGACTGACCAT-TG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATTCAT-CGAC-----TCATAATTTTTTTTTAG-----------AAA-----ACCA-TACCGCA-GCGTT----ATCTCTGCGCTGCGGTAGATGAA--GAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGGT--A-TC-AA-----A-CATTAC-G-CTC----T-G-GAGTGTCC-A--------GT---TG-CA-ACT-----C-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTT-TTAT-T--TGAT-TGA--CAAG--CGG--TA-T-GTT---TTTG-AT-----CTGCT-GTC-----GT-AA-TT-T-GA-GG--AGGTGGCT-TA--AAAATGGGTGTTT
gi|10 : GATGAA-G-AAT---TCG-GTACACATCAGTGCG-GGTG-AA-TTGCCTAA-TA-GA-----A-CGTTACCG-CTCAGACT-G-GA-TGTCCTA--------GT---TGACA-ACTGGAGAT-A-C-T-----AAA--TT-GTCG-AATAGCAAT-TGA-GC----TATTGTCTC-TT-T-T--TGATCTGG--CAAGACCGG--TAGT-GTTGTGTTAG-AG-----AT-TC-GT-CAG----AAA-TT-TGAAGGG--AGGTGGCTATAATAAAATGGGT
gi|11 : GCGGTAGATGAGTGGGGT---T-G-ATATAC----ACGTA-GTC--AC-TGGCT--A-TT-GACCACCA-CATCAT-A-ATT----T-C-GA-TATCC-A--------GC---TGTCACACT-----T-C-T-C-----AAAGTCT-GTCA-ATCAT-CGTCTGA-AT----TATTG---------------AT-TGG--CATC--TGG--TA-TAGTT---TGTA-CA-----CT-CC----CAG--GTAAA-TT-T-TAGGGG-AGGTGCCT-TA--AAACTTGGTTTTggttta
gi|12 : tcAGATGAA-G-AAT---T---GCACGC----GTGCG-GTTGTAA-TTGCT--A-TC--A-----A-CATTAC-G--TC----T-G-GAGTGTCC-A--------GT---TGACA-A-------T-AGC-T-----AAA--CT-GTCA-GTC-G-AATCTGA-GC----TATTGTCTCTTTAT-T--TGAT-TGA--CAAG---GG--TA-T-TGT---TTTG-AT-----CT-CT-GTCC------GAA-TT-T-CAAGGACAGGTGGCT-TA--AAAAAGGcaaa
gi|13 : AA-ATGCT--A-TC-AA-----AACATTCC-A-ATT----TAG-GA-TGCCC-A--------GT---TT----ACT-----T-C-C-TCGGATAAG--CTTGTAA-AGTAG-AACCTGA-GC----TATTCCCTT-TTGT-T--TTAT-TG----ATG--C----CA-T-TTC---ATTG-ACATACACT-AT-ATCCAG--GTAAA-TTGT-CAGGG--AGGTGACT-CA--AAATTGGGTCtgtgttaa
gi|14 : -----T-A-CGT-----AAA------TCA-ATCAC-A-TCGGACAC----TATTGTTTT-TTGC-T--TGAT-TGA--CAGG--TGA--TA-T-GTT---ACAG-AT-----CT-CT-GGATAA--GTAAA-TT-T-TCTGG--GCGCCACC-AA--AAATCAGGTCTTT
gi|15 : agtgggaaatgcccttggcTTTCTGTC-GA-GGTTAGCGA--CGT-ATG--TCT-GGCTC-TCGATGGCAAAG-CATTG-TC-----AATTTTT--TTATTTTCCATA---ATGTTTTCCGGGACAAAT-G--ACATG------TTCT-TACGCGGGA-TGCaa
gi|16 : ----TATTGTCTC-TTGT-G--TGAT-TGA--CGTG--CGG--T----GTT---TTTG-AT-----AT-CC-GTCCAG--GTAAATTT-T-AAGGG--AGGTGGCC-TA--AAATTGGGTCTTTct
gi|17 : CCATTTCG---AC-GGT-G-TTATTAAATAAAGGT-AGGC--G-AACC-TAATCG---ACAGA-CG-GT-TC-TACC-----TTGACCAGG--Ga
gi|18 : aaagg-T--GAACAGTGAGTTTAGAGGACATTCCCCTCT---TCAGGTT-ACAAAAACAGCTATGACTGACTTTATGTTCTAATgg
gi|19 : CAATTATGACT----G--------------GTTCTTTATTGGA-TCTTG-TAAGAAA-ATATA-A-C-AGTTGCAC
gi|2 : CGGTC---TATTAA-TAAAGGTCAGGCCGG-AATCGTAAATGATAACAGATCG-TTATC-TAT-TGGC-TTGATCAAGAGGCTAGCTCC-AGGTGTTTAGTTTG-ATCACT-ACACAT--AGACAAATAACACAGGAAAAAATCATC-AAAACGTG-TTTAGGAAGTTGGAAA-TCTACGTGTTAATCAGCGCCGCGATTT---GAGAA-CA-GATTCTATA-AAGAGCAAATTTGCCGGTTAGAGT-ATGA---ATTGTTTATGCTCGACTGTAATGA-------TTTATGA--CATGGTGATG-CAATTG-TT-TTATTTACGATGATGTGTTTGAGGACGCCATGTATATCATGCAATCTGAGGAAGATATAGTGATT-TTG-ATTAACTAGTTTTTTTA-GATAA----C-TTTT-GT-TAT--------GCTTCT-C-ATTAGACCGGAGT-GAGAGGAGACTCGTTAGATATTAGATTGG-GGACG-GTCGATTGAGCTGATATACTTA-CTGC--TT--CACAACTATC-AC-TGCATTCAGAAGTTCTATAAAGTATCAT-----TTCAA---GTTATTGGTTCGAAAGAAGGGGGTGTGAAATCACATTGTGCTCGATTACATATTGCCGGCTGGGGTGCAATAGGTTCCGG-AGTGT-TCTCATCACA-TATGATTTGCAAGCTAGTTATATGTATGTGGAGGTTT---TGCGAGAGCATTTAACGTAAGACAATCTTTTGCTAG--CTATCCAT
gi|2 : aaggagatgttcgcgacggattggtgcttgtttAT-TTTTT----T-AAAAAAGTTAGATTTTGAAAGAATATTTGTCGTCTGA-GGT-AGCGAGTCGTACAGGTTCGAGGTTCCTCGATACGAAAG-CGTGGATCC-AAAAA----AATTTATT----ATACAGAT-TTTTCC--AGT-AAC-AGAAC-TGATAGAGTTCT-T--GTGGGAATGCGCG-TTTGAACC-TGATTTTTTAGGACATTC---TCTAAGTCGGGTT--CAAAA-CAGTGATGACTGACCTTCTG-TCTAATTTTCAGCAATATTT-Aaaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttatttttttaaaaaagttagattttgaaagaatatttgtcgtctgaggtagcgagtcgtacaggttcgaggttcctcgatacgaaagcgtggatccaaaaaaatttattatacagatttttccagtaacagaactgatagagttcttgtgggaatgcgcgtttgaacctgattttttaggacattctctaagtcgggttcaaaacagtgatgactgaccttctgtctaattttcagcaatattta
gi|3 : aaggagatgttcgcgacggattggtgcttgtttcggtctattaataaaggtcaggccggaatcgtaaatgataacagatcgttatctattggcttgatcaagaggctagctccaggtgtttagtttgatcactacacatagacaaataacacaggaaaaaatcatcaaaacgtgtttaggaagttggaaatctacgtgttaatcagcgccgcgatttgagaacagattctataaagagcaaatttgccggttagagtatgaattgtttatgctcgactgtaatgatttatgacatggtgatgcaattgttttatttacgatgatgtgtttgaggacgccatgtatatcatgcaatctgaggaagatatagtgattttgattaactagtttttttagataacttttgttatgcttctcattagaccggagtgagaggagactcgttagatattagattggggacggtcgattgagctgatatacttactgcttcacaactatcactgcattcagaagttctataaagtatcatttcaagttattggttcgaaagaagggggtgtgaaatcacattgtgctcgattacatattgccggctggggtgcaataggttccggagtgttctcatcacatatgatttgcaagctagttatatgtatgtggaggttttgcgagagcatttaacgtaagacaatcttttgctagctatccataaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttCCATTT-G-CGACCG-TCG-TTATTAA-TAC-GGT-AGGC--GGAACC-TAATCGA-AACAGA-CGTTTATC-TACCTGGATTTGACCAGG--GCT-GT-CC-A--TGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAGCGTGCTT--AGAAGTT-GAAA-TCTAC-TGTTCATCG---------GCT---GAGAATCAAGA-TCA--A-AA-TGCTAATC-----GTCA---TCA-GA---ATT---TAT------CTAAAAATA--------T----A--C-TGAT--TA-CA--TGATTATTAT---CGA-GAG---TGTGAGGACG-----TATAGCAT----TC---GGAAGAT-TA--GAAT-TTGCA--AATTG-ATTTTCTATAA-AA----CTTTTT--TATA-TTCTAATCGCTTCT-CAATTCGACC-GTG--AAGGAGAGAC----TGAATATT--AT-GACGGACGAGT-G--CGAT-------A--TA-CTGCATTT--CACAAATATCTACTTGCATTCAG-AGTT-TATAAA-CAGCAT-----TTCAACATG-TATT--TC--AAAG--GGGG----AAAATC-AA-CTTGTG-AATCA-ATG----CAAGC---G-GC-ATGG---CCCGAA-TGTGTCTGA--A-ATGA---TTTGCA--CT--TT---TGTATA---CGGTTGGCGCGCACGAG-ATTT----CAAGA-AA-----CG-TA-T----------TGATTGA--CACTGCACGCGA----------------------CTGTCAAACGAAAAACTAAAACAAG--TTTCAATTAT-ACT---TG--------------GTTC--TATTGGATTCTTGAAAAGAAACATATATA-CGGGTTACACAT---CTCGTCTCGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGATATTTTT----TAAAAAAAG----A--TTGAAAGAAAA-TTTCTG-C-GAGGGT-A-CGA-TC-T-CAG--TCCAGGC-CCTCGATGACAAAGCCGTTG-TCC-AAAAA---------ATT----ATA---ATGTTTTCC--GAC-AAA-T--AC-TG------TTTTCT--GTGGCT-TGCTTG------ACAGTTATTTTTTA-GACGTTC---TCT---TCGGGTTAACAAAT-CA--CATGA-TAGCCTTGGG-T---ATTTTCA--AATA-TT-AGTTC-CGTAATT-A--CGAC-----T--ACA-------TTAATTTTGTTTTTTAAA-----ACCATTACCGCA-GCG------ATCTC-GCGCTTCGTT-GAT--A-AGAATTCCTCG-GCA-GC----GT-CG-GTTG-A---TG-T--A-TCAAA-----A-CATTAC-G-CTC----C-GAGG-TGTCC-A--------GT---TG-C--ACT-----CAA-C-T-----AAA--CT--TCATATCA--AAT-TGA-GC----TA-TGTC-C-TTATAT--TGAT-T-A--CAAT--C-G--TA-T-G-T---TTTG-AT-----CT-CT-GTCCAGCCG-AAA-TT-T-CAGGT--ATGTGGCT-CA--A
gi|4 : CGTGTTCATCG---------TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCCA----TC---GGAAGAT-TA-TGAAT-TTGCA--AAGTA--TTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGAAC-GT-GA-CGAG-------ATTTA-CTGCATTA--CACAAATATC-ACTTGCATTCAG-AGTT-TAT-AA-CA-CAT-----TTCAACATGTTATT--TTCAAAAG--GGCG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT------C-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTAGAACAAG-TTTTCAATTATGACT---TG--------------G----TTATTGGA-TCTTG-AAAGAAATAT-TA-AGCGGGTTACACATGCGC------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTTAAAAA-AAATAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCCAAAAAA----A--TTA-T----ATA---ATGTTTTCC--GAC-AAT-G--AC-TG------TTCT-T--GTGGGG-TGC-CGTT--GGACAGTGATTTTTGAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTG
gi|5 : GCCCCATTTCGACGACGGCTCGGTTATTAA-TAA-G-T-AGCG--G-AGGC-CAATCGA-A-CAGA-CG-TTATC-TACCTGGAGTTGACC----------------GGCGT-AA--TTGGCT-A-TTACACATTTAGA--AATA-CA--GGAAA-------TGAAAAC-TG-TT--AGA-GTTGGAAACTCTACCTGTTCATCG---------TTT---GAG-A-CAA-ATTCAATATAA-ATCAATTC-----GTCA-AGTTCTGATTTATG---TAT------ATAAAA
gi|5 : ---TAT------CTGAAATTA-------TT----ATTC-TGAT--TAACA-TTGGTT-TTATTTACGATGAT---TTTGAGGACGT----TGC--CAT----------GAAGAT-TT-AGAATCTTGCC--AA--A-TTTTTTTA-AA-AAACTTCTTTTTAGTA-ATTCGTA--TACTTGTACACTTAG-CC-ACGTGGAGGggcgacgagtacaatgtataaaccgctatctgaaattattattctgattaacattggttttatttacgatgattttgaggacgttgccatgaagatttagaatcttgccaaatttttttaaaaaacttctttttagtaattcgtatacttgtacacttagccacgtggagg
gi|6 : gccccatttcgacgacggctcggttattaataagtagcggaggccaatcgaacagacgttatctacctggagttgaccggcgtaattggctattacacatttagaaatacaggaaatgaaaactgttagagttggaaactctacctgttcatcgtttgagacaaattcaatataaatcaattcgtcaagttctgatttatgtatataaaaggcgacgagtacaatgtataaaccgc-CGAG-------ATTTATCTGC-TTTGGCACGAAAATC-ACTTGCATTCAG-AATT-TAAAAA-AA-AATATATTTTCAACCAGTTATT--TTCGAA----------------------CGCGTGTAATCA-ATG----CA--T---TTGC-TCGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--TT--TT---TAAAT----CGATATGC-CGCTCGATCATTT----CGAGAC-ATA--TGG-TAGTCCTATCAA-GTGGCTGAGGGACTAAAAG-GACTCTTCGGTACTCACTACTTACCTGTC--AC---AAACCGAAACAAATTTTTCAATTATGGCT---TAAAAAAATTAAATATGTTCTTTATTGGA-TCTTG--AAGAAATATATA-A-CGGGTTGC
gi|7 : tatcatTCA--AATATTTTAGCTCAGGTAATT-AT-C-ACATTAATTAAAA-------AAAA-----------AAA-----ACCA-TACCGCAAGCG-TGTCTATCTCTGCGCTGCGGTAGATGAAAGGATT---TTGTGCGCGC----TTGCGCGTTGTAACTTGCT--AATC-AA-----AACATTAC-GACTC----T-C-GA-TGTCC-A--------GT---TG-AC-ACT-----C-AGC-T-----ACA--CT-GTCA-ATCAG-AATCTGA-GCCCCTTATTGTTCC-TTCC-TATTGAT-TGAAACAAG--CGG--TA-T-GTT---TTTGTAT-----CT-TCTGTCCAG--GTAAA-TT-C-AAGGG--AGGTGGCT-TA--AAAATGGGGCTTT
gi|8 : CCATTTCG-CGAC-GGTTG-TT-TTA--TAATGGT-AGAG--G-AACT---ATCGA-AACAGA-CG-CTATCTTACC-GGA-TTGACCAGG--GGG-GC-CCAAGATG-TAA--TTG--T-G-T-ACACAT--AGA--AATA-C-CAAG-AA-------T-AACA-GTG-TT--TGAAGTTGGAAA-TCTACGTGT--ATCG---------TTTTCAGAGA---AAGATTC-ATA-AA-AGCAAAT------GTCA-AATCATGA---ATT---TAT------CTAAAATTATACGTGTTT----A--C-TG-T--TT-CA--TGAAT-TTA-TTACGATGA----TTTGAGGACGT----ATTAGC
gi|9 : ggTTTCA--GATATTT-AATTCAGATAATT-ATTCGAC-----TCAAAA-------TTAA-----------GAAGACAAATCA-TACC-------------ATCTTTGCG-----GTAGATGAA-AGGGG---TTG-ATATTT----GTGTA-GTT--AA-TTGCT--A-TC-AA-----AACATTCC-G-ATC----TTG-GA-TACCC-ACTTACCCAGTGGATG-CA--CT-----T-AGC-C-----ACAT-CT-GTCA-ATCAA-AGCCTGA-AC----AATTGTCTC-TTGT-G--TGAT-TGA--CGTG--CGGTATA-T-GTT---TTTG-AT-----CT-CC-ATCCAG--GTAAATTT-T-AAGGG--AGGTGGCT-TA--AAATTGGGTCTTTcagatgaagaattg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 1 111111111 11 111111 11 11 222222222 11 222222222 111 111111 1111111 111111 1111 2222222 1111 11111 222222222 11 11 111 1111 1 2222 11 11 1 11 2222222 1 11 1 22222 11 11 1111 1111 1111 22222 111 11 111 11 11 111 2222 1111 1111 11 1 8888888888888888888888 11 111 11 5555555555555555555 11 111 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 2222 11 3333333333333333 111 11 22222 222222 11 1111 111 111 1 1 11 1111 66666666666666666666666666666666666666666 1 1 444444 111 111 1111 11 1111 11 11111111 1 11111111 333333333333333333333333 11 11111
lowQualScore : 8 0 2 1 6 6 0 6 99 6 88 6 6 6 6 7 3 666666666 8 11 11 444444 8 11 11 8 0 0 888888888 8 11 0 8 2 666666666 6 111 6 3 6 6 777777 6 1 4444444 666666 2222 1111111 99 6 1 99 6 6 7 1 6 4444 55555 666666666 8 44 88 11 8 777 8 8 7777 0 8 11 11 66 8 0 0 0 8 1 88 1111 33 6 2 00 0 11 6666666 3 8 0 11 3 8 0 8 8 0 8 6 00000 11 0 11 1 0 11 7777 0000 3 88 7777 3 44444 8 444 8 8 8 11 8 8 111 11 11 444 5555 8 7777 0 1111 8 88 0 5 33 0 8888888888888888888888 33 777 1 33 5555555555555555555 0 5 8 44 3 0 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 1 1111 3 3 0 8 8 8 88 8 11 0 0 8 8 8 8888888888888888 444 11 8 11111 8 333333 8 11 8 8 9999 0 444 444 88 99 0 0 2 11 0 8 3 4444 2 77777777777777777777777777777777777777777 0 2 0 000000 3 2 777 000 8 5 1 2222 5 66 55 5 5 5555 66 5 00 44444444 0 5 88888888 888 222222222222222222222222 00 4 4 77 1 4 8888 4 888888 4 55 1 55 55 4 4 777 4 00000 4 4 55 0 8 4 55 99 4 55 1
lowQualScore : . . . . . . . . .. . .. . . . . . . ......... . .. .. ...... . .. .. . . . ......... . .. . . . ......... . ... . . . . ...... . . ....... ...... .... ....... .. . . .. . . . . . .... ..... ......... . .. .. .. . ... . . .... . . .. .. .. . . . . . . .. .... .. . . .. . .. ....... . . . .. . . . . . . . . ..... .. . .. . . .. .... .... . .. .... . ..... . ... . . . .. . . ... .. .. ... .... . .... . .... . .. . . .. . ...................... .. ... . .. ................... . . . .. . . ... . .......................................................................................... . ...... . .... . . . . . . .. . .. . . . . . ................ ... .. . ..... . ...... . .. . . .... . ... ... .. .. . . . .. . . . .... . ......................................... . . . ...... . . ... ... . . . .... . .. .. . . .... .. . .. ........ . . ........ ... ........................ .. . . .. . . .... . ...... . .. . .. .. . . ... . ..... . . .. . . . .. .. . .. .
lowQualScore : 0 8 5 0 7 7 0 7 22 7 33 7 7 7 7 3 3 333333333 0 66 00 000000 0 00 00 0 8 8 000000000 0 00 8 0 5 777777777 7 777 7 5 7 7 777777 7 0 3333333 444444 1111 7777777 22 7 7 22 7 7 3 7 7 8888 88888 888888888 0 00 88 00 8 666 0 0 0000 8 0 66 66 22 0 8 6 6 0 0 88 2222 88 5 5 22 0 22 0000000 8 0 6 00 8 0 8 0 0 8 0 0 00000 66 8 00 4 8 00 0000 0000 8 88 0000 2 66666 0 000 0 0 0 00 0 0 888 00 00 000 0000 0 0000 8 8888 0 88 6 6 88 0 8888888888888888888888 22 000 2 22 0000000000000000000 8 6 0 00 8 8 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 0 2222 2 2 8 0 0 0 88 0 00 8 8 0 0 0 0000000000000000 000 00 0 88888 0 000000 0 00 0 8 8888 6 000 000 88 44 8 0 5 00 8 0 2 2222 5 55555555555555555555555555555555555555555 0 5 0 555555 2 5 444 000 9 7 7 1111 7 11 11 0 0 2222 99 0 66 88888888 0 0 11111111 888 888888888888888888888888 66 4 4 33 1 4 5555 0 999999 0 55 0 55 55 0 0 000 0 00000 0 0 55 7 0 0 00 55 0 55 0
consensus : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATC---------G-TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGC-TA-TCAA--A--ACATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
Reference ( family-2645 ) : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATC---------G-TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGC-TA-TCGA--A--ACATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
gi|1 : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GTT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATC---------GTTTT---GAGAA-CAAGATTCAATA-AA-AGCTAATC-----GTCA-AGTCATAA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAA--TTGCA--AAGTA-A-TTTCTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTCG-CC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGACA-GT-GA-CGAG-------ATTTA-CTGCATTT--CAC--ATATC-ATTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCAAAAA--GGGG----AAAATCAAA-CGTGTGTAATC--ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TA---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGATTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACAGAAACAAG-TTTTCAATTATGACTAAATG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-G-C-GGTTACACA-------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTT----T-AAATTAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAA-CGTTG-TCC-AAAAA----T--TTA-T----ATA---ATGTTTTCT--GAC-AATGG--AC-TG------TTTT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAT-CAGCTATGACTGACCAT-TG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATTCAT-CGAC-----TCATAATTTTTTTTTAG-----------AAA-----ACCA-TACCGCA-GCGTT----ATCTCTGCGCTGCGGTAGATGAA--GAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGG-TA-TC-A--A--ACATTAC-G-CTC----T-G-GAGTGTCC-A--------GT---TG-CA-ACT-----C-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTT-TTAT-T--TGAT-TGA--CAAG--CGG--TA-T-GTT---TTTG-AT-----CTGCT-GTC-----GT-AA-TT-T-GA-GG--AGGTGGCT-TA--AAAATGGGTGTTT
gi|10 : GATGAA-G-AAT---TCG-GTACACATCAGTGCG-GGTG-AA-TTGCCTA-ATAG--A--ACGTTACCG-CTCAGACT-G-GA-TGTCCTA--------GT---TGACA-ACTGGAGAT-A-C-T-----AAA--TT-GTCG-AATAGCAAT-TGA-GC----TATTGTCTC-TT-T-T--TGATCTGG--CAAGACCGG--TAGT-GTTGTGTTAG-AG-----AT-TC-GT-CAG----AAA-TT-TGAAGGG--AGGTGGCTATAATAAAATGGGT
gi|11 : GCGGTAGATGAGTGGGGT---T-G-ATATAC----ACGTA-GTC--AC-TGGC-TA-TTGACCACCACATCAT-A-ATT----T-C-GA-TATCC-A--------GC---TGTCACACT-----T-C-T-C-----AAAGTCT-GTCA-ATCAT-CGTCTGA-AT----TATTG---------------AT-TGG--CATC--TGG--TA-TAGTT---TGTA-CA-----CT-CC----CAG--GTAAA-TT-T-TAGGGG-AGGTGCCT-TA--AAACTTGGTTTTggttta
gi|12 : tcAGATGAA-G-AAT---T---GCACGC----GTGCG-GTTGTAA-TTGC-TA-TC----A--ACATTAC-G--TC----T-G-GAGTGTCC-A--------GT---TGACA-A-------T-AGC-T-----AAA--CT-GTCA-GTC-G-AATCTGA-GC----TATTGTCTCTTTAT-T--TGAT-TGA--CAAG---GG--TA-T-TGT---TTTG-AT-----CT-CT-GTCC------GAA-TT-T-CAAGGACAGGTGGCT-TA--AAAAAGGcaaa
gi|13 : AA-ATGC-TA-TCAA--A--ACATTCC-A-ATT----TAG-GA-TGCCC-A--------GT---TT----ACT-----T-C-C-TCGGATAAG--CTTGTAA-AGTAG-AACCTGA-GC----TATTCCCTT-TTGT-T--TTAT-TGA----TG--C----CA-T-TTC---ATTG-ACATACACT-AT-ATCCAG--GTAAA-TTGT-CAGGG--AGGTGACT-CA--AAATTGGGTCtgtgttaa
gi|14 : -----T-A-CGT-----AAA------TCA-ATCAC-A-TCGGACAC----TATTGTTTT-TTGC-T--TGAT-TGA--CAGG--TGA--TA-T-GTT---ACAG-AT-----CT-CT-GGATAA--GTAAA-TT-T-TCTGG--GCGCCACC-AA--AAATCAGGTCTTT
gi|15 : agtgggaaatgcccttggcTTTCTGTC-GA-GGTTAGCGA--CGT-ATG--TCT-GGCTC-TCGATGGCAAAG-CATTG-TC-----AATTTTT--TTATTTTCCATA---ATGTTTTCCGGGACAAAT-G--ACATG------TTCT-TACGCGGGA-TGCaa
gi|16 : ----TATTGTCTC-TTGT-G--TGAT-TGA--CGTG--CGG--T----GTT---TTTG-AT-----AT-CC-GTCCAG--GTAAATTT-T-AAGGG--AGGTGGCC-TA--AAATTGGGTCTTTct
gi|17 : CCATTTCG---AC-GGT-G-TTATTAAATAAAGGT-AGGC--G-AACC-TAATCG---ACAGA-CG-GT-TC-TACC-----TTGACCAGG--Ga
gi|18 : aaagg-T--GAACAGTGAGTTTAGAGGACATTCCCCTCT---TCAGGTT-ACAAAAACAGCTATGACTGACTTTATGTTCTAATgg
gi|19 : CAATTATGACT----G--------------GTTCTTTATTGGA-TCTTG-TAAGAAA-ATATA-A-C-AGTTGCAC
gi|2 : CGGTC---TATTAA-TAAAGGTCAGGCCGG-AATCGTAAATGATAACAGATCG-TTATC-TAT-TGGC-TTGATCAAGAGGCTAGCTCC-AGGTGTTTAGTTTG-ATCACT-ACACAT--AGACAAATAACACAGGAAAAAATCATC-AAAACGTG-TTTAGGAAGTTGGAAA-TCTACGTGTTAATCAGCGCCGCGA-TTT---GAGAA-C-AGATTCTATA-AAGAGCAAATTTGCCGGTTAGAGT-ATGA---ATTGTTTATGCTCGACTGTAATGATTTA-------TGA--CATGGTGATG-CAATTG-TT-TTATTTACGATGATGTGTTTGAGGACGCCATGTATATCATGCAATCTGAGGAAGATATAGTGATT-TTG-ATTAACTAGTTTTTTTA-GATAA----C-TTTT-GT-TAT--------GCTTCT-C-ATTAGACCGGAGT-GAGAGGAGACTCGTTAGATATTAGATTGG-GGACG-GTCGATTGAGCTGATATACTTA-CTGC--TT--CACAACTATC-AC-TGCATTCAGAAGTTCTATAAAGTATCAT-----TTCAA---GTTATTGGTTCGAAAGAAGGGGGTGTGAAATCACATTGTGCTCGATTACATATTGCCGGCTGGGGTGCAATAGGTTCCGG-AGTGT-TCTCATCACA-TATGATTTGCAAGCTAGTTATATGTATGTGGAGGTTT---TGCGAGAGCATTTAACGTAAGACAATCTTTTGCTAG--CTATCCAT
gi|2 : aaggagatgttcgcgacggattggtgcttgtttAT-TTTTT----T-AAAAAAGTTAGATTTTGAAAGAATATTTGTCGTCTGA-GGT-AGCGAGTCGTACAGGTTCGAGGTTCCTCGATACGAAAG-CGTGGATCC-AAAAA----AATTTATT----ATACAGAT-TTTTCC--AGT-AAC-AGAAC-TGATAGAGTTCT-T--GTGGGAATGCGCG-TTTGAACC-TGATTTTTTAGGACATTC---TCTAAGTCGGGTT--CAAAA-CAGTGATGACTGACCTTCTG-TCTAATTTTCAGCAATATTT-Aaaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttatttttttaaaaaagttagattttgaaagaatatttgtcgtctgaggtagcgagtcgtacaggttcgaggttcctcgatacgaaagcgtggatccaaaaaaatttattatacagatttttccagtaacagaactgatagagttcttgtgggaatgcgcgtttgaacctgattttttaggacattctctaagtcgggttcaaaacagtgatgactgaccttctgtctaattttcagcaatattta
gi|3 : aaggagatgttcgcgacggattggtgcttgtttcggtctattaataaaggtcaggccggaatcgtaaatgataacagatcgttatctattggcttgatcaagaggctagctccaggtgtttagtttgatcactacacatagacaaataacacaggaaaaaatcatcaaaacgtgtttaggaagttggaaatctacgtgttaatcagcgccgcgatttgagaacagattctataaagagcaaatttgccggttagagtatgaattgtttatgctcgactgtaatgatttatgacatggtgatgcaattgttttatttacgatgatgtgtttgaggacgccatgtatatcatgcaatctgaggaagatatagtgattttgattaactagtttttttagataacttttgttatgcttctcattagaccggagtgagaggagactcgttagatattagattggggacggtcgattgagctgatatacttactgcttcacaactatcactgcattcagaagttctataaagtatcatttcaagttattggttcgaaagaagggggtgtgaaatcacattgtgctcgattacatattgccggctggggtgcaataggttccggagtgttctcatcacatatgatttgcaagctagttatatgtatgtggaggttttgcgagagcatttaacgtaagacaatcttttgctagctatccataaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttCCATTT-G-CGACCG-TCG-TTATTAA-TAC-GGT-AGGC--GGAACC-TAATCGA-AACAGA-CGTTTATC-TACCTGGATTTGACCAGG--GCT-GT-CC-A--TGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAGCGTGCTT--AGAAGTT-GAAA-TCTAC-TGTTCATC---------G-GCT---GAGAATCAAGA-TCA--A-AA-TGCTAATC-----GTCA---TCA-GA---A---TTTAT------CTAAAA----ATA--------TA--C-TGAT--TA-C-A-TGATTATTAT---CGA-GAG---TGTGAGGACG-----TATAGCAT----TC---GGAAGAT-TA--GAAT-TTGCA--AATTG-ATTTTCTATAA-AA----CTTTTT--TATA-TTCTAATCGCTTCT-CAATTCGACC-GTG--AAGGAGAGAC----TGAATATT--AT-GACGGACGAGT-G--CGAT-------A--TA-CTGCATTT--CACAAATATCTACTTGCATTCAG-AGTT-TATAAA-CAGCAT-----TTCAACATG-TATT--TC--AAAG--GGGG----AAAATC-AA-CTTGTG-AATCA-ATG----CAAGC---G-GC-ATGG---CCCGAA-TGTGTCTGA--A-ATGA---TTTGCA--CT--TT---TGTATA---CGGTTGGCGCGCACGAG-ATTT----CAAGA-AA-----CG-TA-T----------TGATTGA--CACTGCACGCGA----------------------CTGTCAAACGAAAAACTAAAACAAG--TTTCAATTAT-ACT---TG--------------GTTC--TATTGGATTCTTGAAAAGAAACATATATA-CGGGTTACACAT---CTCGTCTCGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGATATTTTT----TAAAAAAAG----A--TTGAAAGAAAA-TTTCTG-C-GAGGGT-A-CGA-TC-T-CAG--TCCAGGC-CCTCGATGACAAAGCCGTTG-TCC-AAAAA---------ATT----ATA---ATGTTTTCC--GAC-AAA-T--AC-TG------TTTTCT--GTGGCT-TGCTTG------ACAGTTATTTTTTA-GACGTTC---TCT---TCGGGTTAACAAAT-CA--CATGA-TAGCCTTGGG-T---ATTTTCA--AATA-TT-AGTTC-CGTAATT-A--CGAC-----T--ACA-------TTAATTTTGTTTTTTAAA-----ACCATTACCGCA-GCG------ATCTC-GCGCTTCGTT-GAT--A-AGAATTCCTCG-GCA-GC----GT-CG-GTTG-A---TG--TA-TCAA--A--ACATTAC-G-CTC----C-GAGG-TGTCC-A--------GT---TG-C--ACT-----CAA-C-T-----AAA--CT--TCATATCA--AAT-TGA-GC----TA-TGTC-C-TTATAT--TGAT-T-A--CAAT--C-G--TA-T-G-T---TTTG-AT-----CT-CT-GTCCAGCCG-AAA-TT-T-CAGGT--ATGTGGCT-CA--A
gi|4 : CGTGTTCATC---------G-TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCCA----TC---GGAAGAT-TA-TGAAT-TTGCA--AAGTA--TTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGAAC-GT-GA-CGAG-------ATTTA-CTGCATTA--CACAAATATC-ACTTGCATTCAG-AGTT-TAT-AA-CA-CAT-----TTCAACATGTTATT--TTCAAAAG--GGCG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT------C-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTAGAACAAG-TTTTCAATTATGACT---TG--------------G----TTATTGGA-TCTTG-AAAGAAATAT-TA-AGCGGGTTACACATGCGC------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTTAAAAA-AAATAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCCAAAAAA----A--TTA-T----ATA---ATGTTTTCC--GAC-AAT-G--AC-TG------TTCT-T--GTGGGG-TGC-CGTT--GGACAGTGATTTTTGAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTG
gi|5 : GCCCCATTTCGACGACGGCTCGGTTATTAA-TAA-G-T-AGCG--G-AGGC-CAATCGA-A-CAGA-CG-TTATC-TACCTGGAGTTGACC----------------GGCGT-AA--TTGGCT-A-TTACACATTTAGA--AATA-CA--GGAAA-------TGAAAAC-TG-TT--AGA-GTTGGAAACTCTACCTGTTCATC---------G-TTT---GAG-A-CAA-ATTCAATATAA-ATCAATTC-----GTCA-AGTTCTGATTTA---TGTAT------ATAAAA----
gi|5 : TAT------CTGAAA----TTA-------TTATTC-TGAT--TAAC-ATTGGTT-TTATTTACGATGAT---TTTGAGGACGT----TGC--CAT----------GAAGAT-TT-AGAATCTTGCC--AA--A-TTTTTTTA-AA-AAACTTCTTTTTAGTA-ATTCGTA--TACTTGTACACTTAG-CC-ACGTGGAGGggcgacgagtacaatgtataaaccgctatctgaaattattattctgattaacattggttttatttacgatgattttgaggacgttgccatgaagatttagaatcttgccaaatttttttaaaaaacttctttttagtaattcgtatacttgtacacttagccacgtggagg
gi|6 : gccccatttcgacgacggctcggttattaataagtagcggaggccaatcgaacagacgttatctacctggagttgaccggcgtaattggctattacacatttagaaatacaggaaatgaaaactgttagagttggaaactctacctgttcatcgtttgagacaaattcaatataaatcaattcgtcaagttctgatttatgtatataaaaggcgacgagtacaatgtataaaccgc-CGAG-------ATTTATCTGC-TTTGGCACGAAAATC-ACTTGCATTCAG-AATT-TAAAAA-AA-AATATATTTTCAACCAGTTATT--TTCGAA----------------------CGCGTGTAATCA-ATG----CA--T---TTGC-TCGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--TT--TT---TAAAT----CGATATGC-CGCTCGATCATTT----CGAGAC-ATA--TGG-TAGTCCTATCAA-GTGGCTGAGGGACTAAAAG-GACTCTTCGGTACTCACTACTTACCTGTC--AC---AAACCGAAACAAATTTTTCAATTATGGCT---TAAAAAAATTAAATATGTTCTTTATTGGA-TCTTG--AAGAAATATATA-A-CGGGTTGC
gi|7 : tatcatTCA--AATATTTTAGCTCAGGTAATT-AT-C-ACATTAATTAAAA-------AAAA-----------AAA-----ACCA-TACCGCAAGCG-TGTCTATCTCTGCGCTGCGGTAGATGAAAGGATT---TTGTGCGCGC----TTGCGCGTTGTAACTTGC-TAATCAA--A--ACATTAC-GACTC----T-C-GA-TGTCC-A--------GT---TG-AC-ACT-----C-AGC-T-----ACA--CT-GTCA-ATCAG-AATCTGA-GCCCCTTATTGTTCC-TTCC-TATTGAT-TGAAACAAG--CGG--TA-T-GTT---TTTGTAT-----CT-TCTGTCCAG--GTAAA-TT-C-AAGGG--AGGTGGCT-TA--AAAATGGGGCTTT
gi|8 : CCATTTCG-CGAC-GGTTG-TT-TTA--TAATGGT-AGAG--G-AACT---ATCGA-AACAGA-CG-CTATCTTACC-GGA-TTGACCAGG--GGG-GC-CCAAGATG-TAA--TTG--T-G-T-ACACAT--AGA--AATA-C-CAAG-AA-------T-AACA-GTG-TT--TGAAGTTGGAAA-TCTACGTGT--ATC---------G-TTTTCAGAGA---AAGATTC-ATA-AA-AGCAAAT------GTCA-AATCATGA---A---TTTAT------CTAAAA----TTATACGTGTTTA--C-TG-T--TT-C-A-TGAAT-TTA-TTACGATGA----TTTGAGGACGT----ATTAGC
gi|9 : ggTTTCA--GATATTT-AATTCAGATAATT-ATTCGAC-----TCAAAA-------TTAA-----------GAAGACAAATCA-TACC-------------ATCTTTGCG-----GTAGATGAA-AGGGG---TTG-ATATTT----GTGTA-GTT--AA-TTGC-TA-TCAA--A--ACATTCC-G-ATC----TTG-GA-TACCC-ACTTACCCAGTGGATG-CA--CT-----T-AGC-C-----ACAT-CT-GTCA-ATCAA-AGCCTGA-AC----AATTGTCTC-TTGT-G--TGAT-TGA--CGTG--CGGTATA-T-GTT---TTTG-AT-----CT-CC-ATCCAG--GTAAATTT-T-AAGGG--AGGTGGCT-TA--AAATTGGGTCTTTcagatgaagaattg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 1 111111111 11 111111 11 11 222222222 11 222222222 111 111111 1111111 111111 1111 2222222 1111 11111 222222222 11 11 111 1111 1 2222 11 11 1 11 2222222 1 11 1 22222 11 11 1111 1111 1111 22222 111 11 111 11 11 111 2222 1111 1111 11 1 8888888888888888888888 11 111 11 5555555555555555555 11 111 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 2222 11 3333333333333333 111 11 22222 222222 11 1111 111 111 1 1 11 1111 66666666666666666666666666666666666666666 1 1 444444 111 111 1111 11 1111 11 11111111 1 11111111 333333333333333333333333 11 11111
lowQualScore : 8 0 2 1 6 6 0 6 99 6 88 6 6 6 6 7 3 666666666 8 11 11 444444 8 11 11 8 0 0 888888888 8 11 0 8 2 666666666 6 111 6 3 6 6 777777 6 1 4444444 666666 2222 1111111 99 6 1 99 6 6 7 1 6 4444 55555 666666666 8 44 88 11 8 777 8 8 7777 0 8 11 11 66 8 0 0 0 8 1 88 1111 33 6 2 00 0 11 6666666 3 8 0 11 3 8 0 8 8 0 8 6 00000 11 0 11 1 0 11 7777 0000 3 88 7777 3 44444 8 444 8 8 8 11 8 8 111 11 11 444 5555 8 7777 0 1111 8 88 0 5 33 0 8888888888888888888888 33 777 1 33 5555555555555555555 0 5 8 44 3 0 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 1 1111 3 3 0 8 8 8 88 8 11 0 0 8 8 8 8888888888888888 444 11 8 11111 8 333333 8 11 8 8 9999 0 444 444 88 99 0 0 2 11 0 8 3 4444 2 77777777777777777777777777777777777777777 0 2 0 000000 3 2 777 000 8 5 1 2222 5 66 55 5 5 0000 3 5 00 44444444 0 5 88888888 888 222222222222222222222222 00 4 4 77 1 4 8888 4 888888 4 55 1 55 55 4 4 777 4 00000 4 4 55 0 8 4 55 99 4 55 1
lowQualScore : . . . . . . . . .. . .. . . . . . . ......... . .. .. ...... . .. .. . . . ......... . .. . . . ......... . ... . . . . ...... . . ....... ...... .... ....... .. . . .. . . . . . .... ..... ......... . .. .. .. . ... . . .... . . .. .. .. . . . . . . .. .... .. . . .. . .. ....... . . . .. . . . . . . . . ..... .. . .. . . .. .... .... . .. .... . ..... . ... . . . .. . . ... .. .. ... .... . .... . .... . .. . . .. . ...................... .. ... . .. ................... . . . .. . . ... . .......................................................................................... . ...... . .... . . . . . . .. . .. . . . . . ................ ... .. . ..... . ...... . .. . . .... . ... ... .. .. . . . .. . . . .... . ......................................... . . . ...... . . ... ... . . . .... . .. .. . . .... . . .. ........ . . ........ ... ........................ .. . . .. . . .... . ...... . .. . .. .. . . ... . ..... . . .. . . . .. .. . .. .
lowQualScore : 0 8 5 0 7 7 0 7 22 7 33 7 7 7 7 3 3 333333333 0 66 00 000000 0 00 00 0 8 8 000000000 0 00 8 0 5 777777777 7 777 7 5 7 7 777777 7 0 3333333 444444 1111 7777777 22 7 7 22 7 7 3 7 7 8888 88888 888888888 0 00 88 00 8 666 0 0 0000 8 0 66 66 22 0 8 6 6 0 0 88 2222 88 5 5 22 0 22 0000000 8 0 6 00 8 0 8 0 0 8 0 0 00000 66 8 00 4 8 00 0000 0000 8 88 0000 2 66666 0 000 0 0 0 00 0 0 888 00 00 000 0000 0 0000 8 8888 0 88 6 6 88 0 8888888888888888888888 22 000 2 22 0000000000000000000 8 6 0 00 8 8 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 0 2222 2 2 8 0 0 0 88 0 00 8 8 0 0 0 0000000000000000 000 00 0 88888 0 000000 0 00 0 8 8888 6 000 000 88 44 8 0 5 00 8 0 2 2222 5 55555555555555555555555555555555555555555 0 5 0 555555 2 5 444 000 9 7 7 1111 7 11 11 0 0 6666 2 0 66 88888888 0 0 11111111 888 888888888888888888888888 66 4 4 33 1 4 5555 0 999999 0 55 0 55 55 0 0 000 0 00000 0 0 55 7 0 0 00 55 0 55 0
consensus : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATC---------G-TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGC-TA-T----CAAAACATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
Reference ( family-2645 ) : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATC---------G-TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGC-TA-T----CAAAACATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
gi|1 : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GTT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATC---------GTTTT---GAGAA-CAAGATTCAATA-AA-AGCTAATC-----GTCA-AGTCATAA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAA--TTGCA--AAGTA-A-TTTCTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTCG-CC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGACA-GT-GA-CGAG-------ATTTA-CTGCATTT--CAC--ATATC-ATTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCAAAAA--GGGG----AAAATCAAA-CGTGTGTAATC--ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TA---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGATTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACAGAAACAAG-TTTTCAATTATGACTAAATG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-G-C-GGTTACACA-------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTT----T-AAATTAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAA-CGTTG-TCC-AAAAA----T--TTA-T----ATA---ATGTTTTCT--GAC-AATGG--AC-TG------TTTT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAT-CAGCTATGACTGACCAT-TG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATTCAT-CGAC-----TCATAATTTTTTTTTAG-----------AAA-----ACCA-TACCGCA-GCGTT----ATCTCTGCGCTGCGGTAGATGAA--GAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGG-TA-T----C-AAACATTAC-G-CTC----T-G-GAGTGTCC-A--------GT---TG-CA-ACT-----C-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTT-TTAT-T--TGAT-TGA--CAAG--CGG--TA-T-GTT---TTTG-AT-----CTGCT-GTC-----GT-AA-TT-T-GA-GG--AGGTGGCT-TA--AAAATGGGTGTTT
gi|10 : GATGAA-G-AAT---TCG-GTACACATCAGTGCG-GGTG-AA-TTGCCTA-A----TAGAACGTTACCG-CTCAGACT-G-GA-TGTCCTA--------GT---TGACA-ACTGGAGAT-A-C-T-----AAA--TT-GTCG-AATAGCAAT-TGA-GC----TATTGTCTC-TT-T-T--TGATCTGG--CAAGACCGG--TAGT-GTTGTGTTAG-AG-----AT-TC-GT-CAG----AAA-TT-TGAAGGG--AGGTGGCTATAATAAAATGGGT
gi|11 : GCGGTAGATGAGTGGGGT---T-G-ATATAC----ACGTA-GTC--AC-TGGC-TA-TTGACCACCACATCAT-A-ATT----T-C-GA-TATCC-A--------GC---TGTCACACT-----T-C-T-C-----AAAGTCT-GTCA-ATCAT-CGTCTGA-AT----TATTG---------------AT-TGG--CATC--TGG--TA-TAGTT---TGTA-CA-----CT-CC----CAG--GTAAA-TT-T-TAGGGG-AGGTGCCT-TA--AAACTTGGTTTTggttta
gi|12 : tcAGATGAA-G-AAT---T---GCACGC----GTGCG-GTTGTAA-TTGC-TA-T----C--AACATTAC-G--TC----T-G-GAGTGTCC-A--------GT---TGACA-A-------T-AGC-T-----AAA--CT-GTCA-GTC-G-AATCTGA-GC----TATTGTCTCTTTAT-T--TGAT-TGA--CAAG---GG--TA-T-TGT---TTTG-AT-----CT-CT-GTCC------GAA-TT-T-CAAGGACAGGTGGCT-TA--AAAAAGGcaaa
gi|13 : AA-ATGC-TA-T----CAAAACATTCC-A-ATT----TAG-GA-TGCCC-A--------GT---TT----ACT-----T-C-C-TCGGATAAG--CTTGTAA-AGTAG-AACCTGA-GC----TATTCCCTT-TTGT-T--TTAT-TGA----TG--C----CA-T-TTC---ATTG-ACATACACT-AT-ATCCAG--GTAAA-TTGT-CAGGG--AGGTGACT-CA--AAATTGGGTCtgtgttaa
gi|14 : -----T-A-CGT-----AAA------TCA-ATCAC-A-TCGGACAC----TATTGTTTT-TTGC-T--TGAT-TGA--CAGG--TGA--TA-T-GTT---ACAG-AT-----CT-CT-GGATAA--GTAAA-TT-T-TCTGG--GCGCCACC-AA--AAATCAGGTCTTT
gi|15 : agtgggaaatgcccttggcTTTCTGTC-GA-GGTTAGCGA--CGT-ATG--TCT-GGCTC-TCGATGGCAAAG-CATTG-TC-----AATTTTT--TTATTTTCCATA---ATGTTTTCCGGGACAAAT-G--ACATG------TTCT-TACGCGGGA-TGCaa
gi|16 : ----TATTGTCTC-TTGT-G--TGAT-TGA--CGTG--CGG--T----GTT---TTTG-AT-----AT-CC-GTCCAG--GTAAATTT-T-AAGGG--AGGTGGCC-TA--AAATTGGGTCTTTct
gi|17 : CCATTTCG---AC-GGT-G-TTATTAAATAAAGGT-AGGC--G-AACC-TAATCG---ACAGA-CG-GT-TC-TACC-----TTGACCAGG--Ga
gi|18 : aaagg-T--GAACAGTGAGTTTAGAGGACATTCCCCTCT---TCAGGTT-ACAAAAACAGCTATGACTGACTTTATGTTCTAATgg
gi|19 : CAATTATGACT----G--------------GTTCTTTATTGGA-TCTTG-TAAGAAA-ATATA-A-C-AGTTGCAC
gi|2 : CGGTC---TATTAA-TAAAGGTCAGGCCGG-AATCGTAAATGATAACAGATCG-TTATC-TAT-TGGC-TTGATCAAGAGGCTAGCTCC-AGGTGTTTAGTTTG-ATCACT-ACACAT--AGACAAATAACACAGGAAAAAATCATC-AAAACGTG-TTTAGGAAGTTGGAAA-TCTACGTGTTAATCAGCGCCGCGA-TTT---GAGAA-C-AGATTCTATA-AAGAGCAAATTTGCCGGTTAGAGT-ATGA---ATTGTTTATGCTCGACTGTAATGATTTA-------TGA--CATGGTGATG-CAATTG-TT-TTATTTACGATGATGTGTTTGAGGACGCCATGTATATCATGCAATCTGAGGAAGATATAGTGATT-TTG-ATTAACTAGTTTTTTTA-GATAA----C-TTTT-GT-TAT--------GCTTCT-C-ATTAGACCGGAGT-GAGAGGAGACTCGTTAGATATTAGATTGG-GGACG-GTCGATTGAGCTGATATACTTA-CTGC--TT--CACAACTATC-AC-TGCATTCAGAAGTTCTATAAAGTATCAT-----TTCAA---GTTATTGGTTCGAAAGAAGGGGGTGTGAAATCACATTGTGCTCGATTACATATTGCCGGCTGGGGTGCAATAGGTTCCGG-AGTGT-TCTCATCACA-TATGATTTGCAAGCTAGTTATATGTATGTGGAGGTTT---TGCGAGAGCATTTAACGTAAGACAATCTTTTGCTAG--CTATCCAT
gi|2 : aaggagatgttcgcgacggattggtgcttgtttAT-TTTTT----T-AAAAAAGTTAGATTTTGAAAGAATATTTGTCGTCTGA-GGT-AGCGAGTCGTACAGGTTCGAGGTTCCTCGATACGAAAG-CGTGGATCC-AAAAA----AATTTATT----ATACAGAT-TTTTCC--AGT-AAC-AGAAC-TGATAGAGTTCT-T--GTGGGAATGCGCG-TTTGAACC-TGATTTTTTAGGACATTC---TCTAAGTCGGGTT--CAAAA-CAGTGATGACTGACCTTCTG-TCTAATTTTCAGCAATATTT-Aaaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttatttttttaaaaaagttagattttgaaagaatatttgtcgtctgaggtagcgagtcgtacaggttcgaggttcctcgatacgaaagcgtggatccaaaaaaatttattatacagatttttccagtaacagaactgatagagttcttgtgggaatgcgcgtttgaacctgattttttaggacattctctaagtcgggttcaaaacagtgatgactgaccttctgtctaattttcagcaatattta
gi|3 : aaggagatgttcgcgacggattggtgcttgtttcggtctattaataaaggtcaggccggaatcgtaaatgataacagatcgttatctattggcttgatcaagaggctagctccaggtgtttagtttgatcactacacatagacaaataacacaggaaaaaatcatcaaaacgtgtttaggaagttggaaatctacgtgttaatcagcgccgcgatttgagaacagattctataaagagcaaatttgccggttagagtatgaattgtttatgctcgactgtaatgatttatgacatggtgatgcaattgttttatttacgatgatgtgtttgaggacgccatgtatatcatgcaatctgaggaagatatagtgattttgattaactagtttttttagataacttttgttatgcttctcattagaccggagtgagaggagactcgttagatattagattggggacggtcgattgagctgatatacttactgcttcacaactatcactgcattcagaagttctataaagtatcatttcaagttattggttcgaaagaagggggtgtgaaatcacattgtgctcgattacatattgccggctggggtgcaataggttccggagtgttctcatcacatatgatttgcaagctagttatatgtatgtggaggttttgcgagagcatttaacgtaagacaatcttttgctagctatccataaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttCCATTT-G-CGACCG-TCG-TTATTAA-TAC-GGT-AGGC--GGAACC-TAATCGA-AACAGA-CGTTTATC-TACCTGGATTTGACCAGG--GCT-GT-CC-A--TGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAGCGTGCTT--AGAAGTT-GAAA-TCTAC-TGTTCATC---------G-GCT---GAGAATCAAGA-TCA--A-AA-TGCTAATC-----GTCA---TCA-GA---A---TTTAT------CTAAAA----ATA--------TA--C-TGAT--TA-C-A-TGATTATTAT---CGA-GAG---TGTGAGGACG-----TATAGCAT----TC---GGAAGAT-TA--GAAT-TTGCA--AATTG-ATTTTCTATAA-AA----CTTTTT--TATA-TTCTAATCGCTTCT-CAATTCGACC-GTG--AAGGAGAGAC----TGAATATT--AT-GACGGACGAGT-G--CGAT-------A--TA-CTGCATTT--CACAAATATCTACTTGCATTCAG-AGTT-TATAAA-CAGCAT-----TTCAACATG-TATT--TC--AAAG--GGGG----AAAATC-AA-CTTGTG-AATCA-ATG----CAAGC---G-GC-ATGG---CCCGAA-TGTGTCTGA--A-ATGA---TTTGCA--CT--TT---TGTATA---CGGTTGGCGCGCACGAG-ATTT----CAAGA-AA-----CG-TA-T----------TGATTGA--CACTGCACGCGA----------------------CTGTCAAACGAAAAACTAAAACAAG--TTTCAATTAT-ACT---TG--------------GTTC--TATTGGATTCTTGAAAAGAAACATATATA-CGGGTTACACAT---CTCGTCTCGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGATATTTTT----TAAAAAAAG----A--TTGAAAGAAAA-TTTCTG-C-GAGGGT-A-CGA-TC-T-CAG--TCCAGGC-CCTCGATGACAAAGCCGTTG-TCC-AAAAA---------ATT----ATA---ATGTTTTCC--GAC-AAA-T--AC-TG------TTTTCT--GTGGCT-TGCTTG------ACAGTTATTTTTTA-GACGTTC---TCT---TCGGGTTAACAAAT-CA--CATGA-TAGCCTTGGG-T---ATTTTCA--AATA-TT-AGTTC-CGTAATT-A--CGAC-----T--ACA-------TTAATTTTGTTTTTTAAA-----ACCATTACCGCA-GCG------ATCTC-GCGCTTCGTT-GAT--A-AGAATTCCTCG-GCA-GC----GT-CG-GTTG-A---TG--TA-T----CAAAACATTAC-G-CTC----C-GAGG-TGTCC-A--------GT---TG-C--ACT-----CAA-C-T-----AAA--CT--TCATATCA--AAT-TGA-GC----TA-TGTC-C-TTATAT--TGAT-T-A--CAAT--C-G--TA-T-G-T---TTTG-AT-----CT-CT-GTCCAGCCG-AAA-TT-T-CAGGT--ATGTGGCT-CA--A
gi|4 : CGTGTTCATC---------G-TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCCA----TC---GGAAGAT-TA-TGAAT-TTGCA--AAGTA--TTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGAAC-GT-GA-CGAG-------ATTTA-CTGCATTA--CACAAATATC-ACTTGCATTCAG-AGTT-TAT-AA-CA-CAT-----TTCAACATGTTATT--TTCAAAAG--GGCG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT------C-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTAGAACAAG-TTTTCAATTATGACT---TG--------------G----TTATTGGA-TCTTG-AAAGAAATAT-TA-AGCGGGTTACACATGCGC------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTTAAAAA-AAATAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCCAAAAAA----A--TTA-T----ATA---ATGTTTTCC--GAC-AAT-G--AC-TG------TTCT-T--GTGGGG-TGC-CGTT--GGACAGTGATTTTTGAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTG
gi|5 : GCCCCATTTCGACGACGGCTCGGTTATTAA-TAA-G-T-AGCG--G-AGGC-CAATCGA-A-CAGA-CG-TTATC-TACCTGGAGTTGACC----------------GGCGT-AA--TTGGCT-A-TTACACATTTAGA--AATA-CA--GGAAA-------TGAAAAC-TG-TT--AGA-GTTGGAAACTCTACCTGTTCATC---------G-TTT---GAG-A-CAA-ATTCAATATAA-ATCAATTC-----GTCA-AGTTCTGATTTA---TGTAT------ATAAAA----
gi|5 : TAT------CTGAAA----TTA-------TTATTC-TGAT--TAAC-ATTGGTT-TTATTTACGATGAT---TTTGAGGACGT----TGC--CAT----------GAAGAT-TT-AGAATCTTGCC--AA--A-TTTTTTTA-AA-AAACTTCTTTTTAGTA-ATTCGTA--TACTTGTACACTTAG-CC-ACGTGGAGGggcgacgagtacaatgtataaaccgctatctgaaattattattctgattaacattggttttatttacgatgattttgaggacgttgccatgaagatttagaatcttgccaaatttttttaaaaaacttctttttagtaattcgtatacttgtacacttagccacgtggagg
gi|6 : gccccatttcgacgacggctcggttattaataagtagcggaggccaatcgaacagacgttatctacctggagttgaccggcgtaattggctattacacatttagaaatacaggaaatgaaaactgttagagttggaaactctacctgttcatcgtttgagacaaattcaatataaatcaattcgtcaagttctgatttatgtatataaaaggcgacgagtacaatgtataaaccgc-CGAG-------ATTTATCTGC-TTTGGCACGAAAATC-ACTTGCATTCAG-AATT-TAAAAA-AA-AATATATTTTCAACCAGTTATT--TTCGAA----------------------CGCGTGTAATCA-ATG----CA--T---TTGC-TCGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--TT--TT---TAAAT----CGATATGC-CGCTCGATCATTT----CGAGAC-ATA--TGG-TAGTCCTATCAA-GTGGCTGAGGGACTAAAAG-GACTCTTCGGTACTCACTACTTACCTGTC--AC---AAACCGAAACAAATTTTTCAATTATGGCT---TAAAAAAATTAAATATGTTCTTTATTGGA-TCTTG--AAGAAATATATA-A-CGGGTTGC
gi|7 : tatcatTCA--AATATTTTAGCTCAGGTAATT-AT-C-ACATTAATTAAAA-------AAAA-----------AAA-----ACCA-TACCGCAAGCG-TGTCTATCTCTGCGCTGCGGTAGATGAAAGGATT---TTGTGCGCGC----TTGCGCGTTGTAACTTGC-TAAT----CAAAACATTAC-GACTC----T-C-GA-TGTCC-A--------GT---TG-AC-ACT-----C-AGC-T-----ACA--CT-GTCA-ATCAG-AATCTGA-GCCCCTTATTGTTCC-TTCC-TATTGAT-TGAAACAAG--CGG--TA-T-GTT---TTTGTAT-----CT-TCTGTCCAG--GTAAA-TT-C-AAGGG--AGGTGGCT-TA--AAAATGGGGCTTT
gi|8 : CCATTTCG-CGAC-GGTTG-TT-TTA--TAATGGT-AGAG--G-AACT---ATCGA-AACAGA-CG-CTATCTTACC-GGA-TTGACCAGG--GGG-GC-CCAAGATG-TAA--TTG--T-G-T-ACACAT--AGA--AATA-C-CAAG-AA-------T-AACA-GTG-TT--TGAAGTTGGAAA-TCTACGTGT--ATC---------G-TTTTCAGAGA---AAGATTC-ATA-AA-AGCAAAT------GTCA-AATCATGA---A---TTTAT------CTAAAA----TTATACGTGTTTA--C-TG-T--TT-C-A-TGAAT-TTA-TTACGATGA----TTTGAGGACGT----ATTAGC
gi|9 : ggTTTCA--GATATTT-AATTCAGATAATT-ATTCGAC-----TCAAAA-------TTAA-----------GAAGACAAATCA-TACC-------------ATCTTTGCG-----GTAGATGAA-AGGGG---TTG-ATATTT----GTGTA-GTT--AA-TTGC-TA-T----CAAAACATTCC-G-ATC----TTG-GA-TACCC-ACTTACCCAGTGGATG-CA--CT-----T-AGC-C-----ACAT-CT-GTCA-ATCAA-AGCCTGA-AC----AATTGTCTC-TTGT-G--TGAT-TGA--CGTG--CGGTATA-T-GTT---TTTG-AT-----CT-CC-ATCCAG--GTAAATTT-T-AAGGG--AGGTGGCT-TA--AAATTGGGTCTTTcagatgaagaattg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 1 111111111 11 111111 11 11 222222222 11 222222222 111 111111 1111111 111111 1111 2222222 1111 11111 222222222 11 11 111 1111 1 2222 11 11 1 11 2222222 1 11 1 22222 11 11 1111 1111 1111 22222 111 11 111 11 11 111 2222 1111 1111 11 1 8888888888888888888888 11 111 11 5555555555555555555 11 111 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 2222 11 3333333333333333 111 11 22222 222222 11 1111 111 111 1 1 11 1111 66666666666666666666666666666666666666666 1 1 444444 111 111 1111 11 1111 11 11111111 1 11111111 333333333333333333333333 11 11111
lowQualScore : 8 0 2 1 6 6 0 6 99 6 88 6 6 6 6 7 3 666666666 8 11 11 444444 8 11 11 8 0 0 888888888 8 11 0 8 2 666666666 6 111 6 3 6 6 777777 6 1 4444444 666666 2222 1111111 99 6 1 99 6 6 7 1 6 4444 55555 666666666 8 44 88 11 8 777 8 8 7777 0 8 11 11 66 8 0 0 0 8 1 88 1111 33 6 2 00 0 11 6666666 3 8 0 11 3 8 0 8 8 0 8 6 00000 11 0 11 1 0 11 7777 0000 3 88 7777 3 44444 8 444 8 8 8 11 8 8 111 11 11 444 5555 8 7777 0 1111 8 88 0 5 33 0 8888888888888888888888 33 777 1 33 5555555555555555555 0 5 8 44 3 0 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 1 1111 3 3 0 8 8 8 88 8 11 0 0 8 8 8 8888888888888888 444 11 8 11111 8 333333 8 11 8 8 9999 0 444 444 88 99 0 0 2 11 0 8 3 4444 2 77777777777777777777777777777777777777777 0 2 0 000000 3 2 777 000 8 5 1 2222 5 66 55 5 5 0000 3 5 00 44444444 0 5 88888888 888 222222222222222222222222 00 4 4 77 1 4 8888 4 888888 4 55 1 55 55 4 4 777 4 00000 4 4 55 0 8 4 55 99 4 55 1
lowQualScore : . . . . . . . . .. . .. . . . . . . ......... . .. .. ...... . .. .. . . . ......... . .. . . . ......... . ... . . . . ...... . . ....... ...... .... ....... .. . . .. . . . . . .... ..... ......... . .. .. .. . ... . . .... . . .. .. .. . . . . . . .. .... .. . . .. . .. ....... . . . .. . . . . . . . . ..... .. . .. . . .. .... .... . .. .... . ..... . ... . . . .. . . ... .. .. ... .... . .... . .... . .. . . .. . ...................... .. ... . .. ................... . . . .. . . ... . .......................................................................................... . ...... . .... . . . . . . .. . .. . . . . . ................ ... .. . ..... . ...... . .. . . .... . ... ... .. .. . . . .. . . . .... . ......................................... . . . ...... . . ... ... . . . .... . .. .. . . .... . . .. ........ . . ........ ... ........................ .. . . .. . . .... . ...... . .. . .. .. . . ... . ..... . . .. . . . .. .. . .. .
lowQualScore : 0 8 5 0 7 7 0 7 22 7 33 7 7 7 7 3 3 333333333 0 66 00 000000 0 00 00 0 8 8 000000000 0 00 8 0 5 777777777 7 777 7 5 7 7 777777 7 0 3333333 444444 1111 7777777 22 7 7 22 7 7 3 7 7 8888 88888 888888888 0 00 88 00 8 666 0 0 0000 8 0 66 66 22 0 8 6 6 0 0 88 2222 88 5 5 22 0 22 0000000 8 0 6 00 8 0 8 0 0 8 0 0 00000 66 8 00 4 8 00 0000 0000 8 88 0000 2 66666 0 000 0 0 0 00 0 0 888 00 00 000 0000 0 0000 8 8888 0 88 6 6 88 0 8888888888888888888888 22 000 2 22 0000000000000000000 8 6 0 00 8 8 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 0 2222 2 2 8 0 0 0 88 0 00 8 8 0 0 0 0000000000000000 000 00 0 88888 0 000000 0 00 0 8 8888 6 000 000 88 44 8 0 5 00 8 0 2 2222 5 55555555555555555555555555555555555555555 0 5 0 555555 2 5 444 000 9 7 7 1111 7 11 11 0 0 6666 2 0 66 88888888 0 0 11111111 888 888888888888888888888888 66 4 4 33 1 4 5555 0 999999 0 55 0 55 55 0 0 000 0 00000 0 0 55 7 0 0 00 55 0 55 0
consensus : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATC---------G-TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGC-TA-T----CAAAACATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
Reference ( family-2645 ) : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATC---------G-TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGC-TA-T----CAAAACATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
gi|1 : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GTT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATC---------GTTTT---GAGAA-CAAGATTCAATA-AA-AGCTAATC-----GTCA-AGTCATAA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAA--TTGCA--AAGTA-A-TTTCTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTCG-CC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGACA-GT-GA-CGAG-------ATTTA-CTGCATTT--CAC--ATATC-ATTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCAAAAA--GGGG----AAAATCAAA-CGTGTGTAATC--ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TA---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGATTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACAGAAACAAG-TTTTCAATTATGACTAAATG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-G-C-GGTTACACA-------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTT----T-AAATTAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAA-CGTTG-TCC-AAAAA----T--TTA-T----ATA---ATGTTTTCT--GAC-AATGG--AC-TG------TTTT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAT-CAGCTATGACTGACCAT-TG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATTCAT-CGAC-----TCATAATTTTTTTTTAG-----------AAA-----ACCA-TACCGCA-GCGTT----ATCTCTGCGCTGCGGTAGATGAA--GAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGG-TA-T----C-AAACATTAC-G-CTC----T-G-GAGTGTCC-A--------GT---TG-CA-ACT-----C-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTT-TTAT-T--TGAT-TGA--CAAG--CGG--TA-T-GTT---TTTG-AT-----CTGCT-GTC-----GT-AA-TT-T-GA-GG--AGGTGGCT-TA--AAAATGGGTGTTT
gi|10 : GATGAA-G-AAT---TCG-GTACACATCAGTGCG-GGTG-AA-TTGCCTA-A----TAGAACGTTACCG-CTCAGACT-G-GA-TGTCCTA--------GT---TGACA-ACTGGAGAT-A-C-T-----AAA--TT-GTCG-AATAGCAAT-TGA-GC----TATTGTCTC-TT-T-T--TGATCTGG--CAAGACCGG--TAGT-GTTGTGTTAG-AG-----AT-TC-GT-CAG----AAA-TT-TGAAGGG--AGGTGGCTATAATAAAATGGGT
gi|11 : GCGGTAGATGAGTGGGGT---T-G-ATATAC----ACGTA-GTC--AC-TGGC-TA-TTGACCACCACATCAT-A-ATT----T-C-GA-TATCC-A--------GC---TGTCACACT-----T-C-T-C-----AAAGTCT-GTCA-ATCAT-CGTCTGA-AT----TATTG---------------AT-TGG--CATC--TGG--TA-TAGTT---TGTA-CA-----CT-CC----CAG--GTAAA-TT-T-TAGGGG-AGGTGCCT-TA--AAACTTGGTTTTggttta
gi|12 : tcAGATGAA-G-AAT---T---GCACGC----GTGCG-GTTGTAA-TTGC-TA-T----C--AACATTAC-G--TC----T-G-GAGTGTCC-A--------GT---TGACA-A-------T-AGC-T-----AAA--CT-GTCA-GTC-G-AATCTGA-GC----TATTGTCTCTTTAT-T--TGAT-TGA--CAAG---GG--TA-T-TGT---TTTG-AT-----CT-CT-GTCC------GAA-TT-T-CAAGGACAGGTGGCT-TA--AAAAAGGcaaa
gi|13 : AA-ATGC-TA-T----CAAAACATTCC-A-ATT----TAG-GA-TGCCC-A--------GT---TT----ACT-----T-C-C-TCGGATAAG--CTTGTAA-AGTAG-AACCTGA-GC----TATTCCCTT-TTGT-T--TTAT-TGA----TG--C----CA-T-TTC---ATTG-ACATACACT-AT-ATCCAG--GTAAA-TTGT-CAGGG--AGGTGACT-CA--AAATTGGGTCtgtgttaa
gi|14 : -----T-A-CGT-----AAA------TCA-ATCAC-A-TCGGACAC----TATTGTTTT-TTGC-T--TGAT-TGA--CAGG--TGA--TA-T-GTT---ACAG-AT-----CT-CT-GGATAA--GTAAA-TT-T-TCTGG--GCGCCACC-AA--AAATCAGGTCTTT
gi|15 : agtgggaaatgcccttggcTTTCTGTC-GA-GGTTAGCGA--CGT-ATG--TCT-GGCTC-TCGATGGCAAAG-CATTG-TC-----AATTTTT--TTATTTTCCATA---ATGTTTTCCGGGACAAAT-G--ACATG------TTCT-TACGCGGGA-TGCaa
gi|16 : ----TATTGTCTC-TTGT-G--TGAT-TGA--CGTG--CGG--T----GTT---TTTG-AT-----AT-CC-GTCCAG--GTAAATTT-T-AAGGG--AGGTGGCC-TA--AAATTGGGTCTTTct
gi|17 : CCATTTCG---AC-GGT-G-TTATTAAATAAAGGT-AGGC--G-AACC-TAATCG---ACAGA-CG-GT-TC-TACC-----TTGACCAGG--Ga
gi|18 : aaagg-T--GAACAGTGAGTTTAGAGGACATTCCCCTCT---TCAGGTT-ACAAAAACAGCTATGACTGACTTTATGTTCTAATgg
gi|19 : CAATTATGACT----G--------------GTTCTTTATTGGA-TCTTG-TAAGAAA-ATATA-A-C-AGTTGCAC
gi|2 : CGGTC---TATTAA-TAAAGGTCAGGCCGG-AATCGTAAATGATAACAGATCG-TTATC-TAT-TGGC-TTGATCAAGAGGCTAGCTCC-AGGTGTTTAGTTTG-ATCACT-ACACAT--AGACAAATAACACAGGAAAAAATCATC-AAAACGTG-TTTAGGAAGTTGGAAA-TCTACGTGTTAATCAGCGCCGCGA-TTT---GAGAA-C-AGATTCTATA-AAGAGCAAATTTGCCGGTTAGAGT-ATGA---ATTGTTTATGCTCGACTGTAATGATTTA-------TGA--CATGGTGATG-CAATTG-TT-TTATTTACGATGATGTGTTTGAGGACGCCATGTATATCATGCAATCTGAGGAAGATATAGTGATT-TTG-ATTAACTAGTTTTTTTA-GATAA----C-TTTT-GT-TAT--------GCTTCT-C-ATTAGACCGGAGT-GAGAGGAGACTCGTTAGATATTAGATTGG-GGACG-GTCGATTGAGCTGATATACTTA-CTGC--TT--CACAACTATC-AC-TGCATTCAGAAGTTCTATAAAGTATCAT-----TTCAA---GTTATTGGTTCGAAAGAAGGGGGTGTGAAATCACATTGTGCTCGATTACATATTGCCGGCTGGGGTGCAATAGGTTCCGG-AGTGT-TCTCATCACA-TATGATTTGCAAGCTAGTTATATGTATGTGGAGGTTT---TGCGAGAGCATTTAACGTAAGACAATCTTTTGCTAG--CTATCCAT
gi|2 : aaggagatgttcgcgacggattggtgcttgtttAT-TTTTT----T-AAAAAAGTTAGATTTTGAAAGAATATTTGTCGTCTGA-GGT-AGCGAGTCGTACAGGTTCGAGGTTCCTCGATACGAAAG-CGTGGATCC-AAAAA----AATTTATT----ATACAGAT-TTTTCC--AGT-AAC-AGAAC-TGATAGAGTTCT-T--GTGGGAATGCGCG-TTTGAACC-TGATTTTTTAGGACATTC---TCTAAGTCGGGTT--CAAAA-CAGTGATGACTGACCTTCTG-TCTAATTTTCAGCAATATTT-Aaaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttatttttttaaaaaagttagattttgaaagaatatttgtcgtctgaggtagcgagtcgtacaggttcgaggttcctcgatacgaaagcgtggatccaaaaaaatttattatacagatttttccagtaacagaactgatagagttcttgtgggaatgcgcgtttgaacctgattttttaggacattctctaagtcgggttcaaaacagtgatgactgaccttctgtctaattttcagcaatattta
gi|3 : aaggagatgttcgcgacggattggtgcttgtttcggtctattaataaaggtcaggccggaatcgtaaatgataacagatcgttatctattggcttgatcaagaggctagctccaggtgtttagtttgatcactacacatagacaaataacacaggaaaaaatcatcaaaacgtgtttaggaagttggaaatctacgtgttaatcagcgccgcgatttgagaacagattctataaagagcaaatttgccggttagagtatgaattgtttatgctcgactgtaatgatttatgacatggtgatgcaattgttttatttacgatgatgtgtttgaggacgccatgtatatcatgcaatctgaggaagatatagtgattttgattaactagtttttttagataacttttgttatgcttctcattagaccggagtgagaggagactcgttagatattagattggggacggtcgattgagctgatatacttactgcttcacaactatcactgcattcagaagttctataaagtatcatttcaagttattggttcgaaagaagggggtgtgaaatcacattgtgctcgattacatattgccggctggggtgcaataggttccggagtgttctcatcacatatgatttgcaagctagttatatgtatgtggaggttttgcgagagcatttaacgtaagacaatcttttgctagctatccataaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttCCATTT-G-CGACCG-TCG-TTATTAA-TAC-GGT-AGGC--GGAACC-TAATCGA-AACAGA-CGTTTATC-TACCTGGATTTGACCAGG--GCT-GT-CC-A--TGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAGCGTGCTT--AGAAGTT-GAAA-TCTAC-TGTTCATC---------G-GCT---GAGAATCAAGA-TCA--A-AA-TGCTAATC-----GTCA---TCA-GA---A---TTTAT------CTAAAA----ATA--------TA--C-TGAT--TA-C-A-TGATTATTAT---CGA-GAG---TGTGAGGACG-----TATAGCAT----TC---GGAAGAT-TA--GAAT-TTGCA--AATTG-ATTTTCTATAA-AA----CTTTTT--TATA-TTCTAATCGCTTCT-CAATTCGACC-GTG--AAGGAGAGAC----TGAATATT--AT-GACGGACGAGT-G--CGAT-------A--TA-CTGCATTT--CACAAATATCTACTTGCATTCAG-AGTT-TATAAA-CAGCAT-----TTCAACATG-TATT--TC--AAAG--GGGG----AAAATC-AA-CTTGTG-AATCA-ATG----CAAGC---G-GC-ATGG---CCCGAA-TGTGTCTGA--A-ATGA---TTTGCA--CT--TT---TGTATA---CGGTTGGCGCGCACGAG-ATTT----CAAGA-AA-----CG-TA-T----------TGATTGA--CACTGCACGCGA----------------------CTGTCAAACGAAAAACTAAAACAAG--TTTCAATTAT-ACT---TG--------------GTTC--TATTGGATTCTTGAAAAGAAACATATATA-CGGGTTACACAT---CTCGTCTCGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGATATTTTT----TAAAAAAAG----A--TTGAAAGAAAA-TTTCTG-C-GAGGGT-A-CGA-TC-T-CAG--TCCAGGC-CCTCGATGACAAAGCCGTTG-TCC-AAAAA---------ATT----ATA---ATGTTTTCC--GAC-AAA-T--AC-TG------TTTTCT--GTGGCT-TGCTTG------ACAGTTATTTTTTA-GACGTTC---TCT---TCGGGTTAACAAAT-CA--CATGA-TAGCCTTGGG-T---ATTTTCA--AATA-TT-AGTTC-CGTAATT-A--CGAC-----T--ACA-------TTAATTTTGTTTTTTAAA-----ACCATTACCGCA-GCG------ATCTC-GCGCTTCGTT-GAT--A-AGAATTCCTCG-GCA-GC----GT-CG-GTTG-A---TG--TA-T----CAAAACATTAC-G-CTC----C-GAGG-TGTCC-A--------GT---TG-C--ACT-----CAA-C-T-----AAA--CT--TCATATCA--AAT-TGA-GC----TA-TGTC-C-TTATAT--TGAT-T-A--CAAT--C-G--TA-T-G-T---TTTG-AT-----CT-CT-GTCCAGCCG-AAA-TT-T-CAGGT--ATGTGGCT-CA--A
gi|4 : CGTGTTCATC---------G-TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCCA----TC---GGAAGAT-TA-TGAAT-TTGCA--AAGTA--TTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGAAC-GT-GA-CGAG-------ATTTA-CTGCATTA--CACAAATATC-ACTTGCATTCAG-AGTT-TAT-AA-CA-CAT-----TTCAACATGTTATT--TTCAAAAG--GGCG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT------C-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTAGAACAAG-TTTTCAATTATGACT---TG--------------G----TTATTGGA-TCTTG-AAAGAAATAT-TA-AGCGGGTTACACATGCGC------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTTAAAAA-AAATAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCCAAAAAA----A--TTA-T----ATA---ATGTTTTCC--GAC-AAT-G--AC-TG------TTCT-T--GTGGGG-TGC-CGTT--GGACAGTGATTTTTGAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTG
gi|5 : GCCCCATTTCGACGACGGCTCGGTTATTAA-TAA-G-T-AGCG--G-AGGC-CAATCGA-A-CAGA-CG-TTATC-TACCTGGAGTTGACC----------------GGCGT-AA--TTGGCT-A-TTACACATTTAGA--AATA-CA--GGAAA-------TGAAAAC-TG-TT--AGA-GTTGGAAACTCTACCTGTTCATC---------G-TTT---GAG-A-CAA-ATTCAATATAA-ATCAATTC-----GTCA-AGTTCTGATTTA---TGTAT------ATAAAA----
gi|5 : TAT------CTGAAA----TTA-------TTATTC-TGAT--TAAC-ATTGGTT-TTATTTACGATGAT---TTTGAGGACGT----TGC--CAT----------GAAGAT-TT-AGAATCTTGCC--AA--A-TTTTTTTA-AA-AAACTTCTTTTTAGTA-ATTCGTA--TACTTGTACACTTAG-CC-ACGTGGAGGggcgacgagtacaatgtataaaccgctatctgaaattattattctgattaacattggttttatttacgatgattttgaggacgttgccatgaagatttagaatcttgccaaatttttttaaaaaacttctttttagtaattcgtatacttgtacacttagccacgtggagg
gi|6 : gccccatttcgacgacggctcggttattaataagtagcggaggccaatcgaacagacgttatctacctggagttgaccggcgtaattggctattacacatttagaaatacaggaaatgaaaactgttagagttggaaactctacctgttcatcgtttgagacaaattcaatataaatcaattcgtcaagttctgatttatgtatataaaaggcgacgagtacaatgtataaaccgc-CGAG-------ATTTATCTGC-TTTGGCACGAAAATC-ACTTGCATTCAG-AATT-TAAAAA-AA-AATATATTTTCAACCAGTTATT--TTCGAA----------------------CGCGTGTAATCA-ATG----CA--T---TTGC-TCGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--TT--TT---TAAAT----CGATATGC-CGCTCGATCATTT----CGAGAC-ATA--TGG-TAGTCCTATCAA-GTGGCTGAGGGACTAAAAG-GACTCTTCGGTACTCACTACTTACCTGTC--AC---AAACCGAAACAAATTTTTCAATTATGGCT---TAAAAAAATTAAATATGTTCTTTATTGGA-TCTTG--AAGAAATATATA-A-CGGGTTGC
gi|7 : tatcatTCA--AATATTTTAGCTCAGGTAATT-AT-C-ACATTAATTAAAA-------AAAA-----------AAA-----ACCA-TACCGCAAGCG-TGTCTATCTCTGCGCTGCGGTAGATGAAAGGATT---TTGTGCGCGC----TTGCGCGTTGTAACTTGC-TAAT----CAAAACATTAC-GACTC----T-C-GA-TGTCC-A--------GT---TG-AC-ACT-----C-AGC-T-----ACA--CT-GTCA-ATCAG-AATCTGA-GCCCCTTATTGTTCC-TTCC-TATTGAT-TGAAACAAG--CGG--TA-T-GTT---TTTGTAT-----CT-TCTGTCCAG--GTAAA-TT-C-AAGGG--AGGTGGCT-TA--AAAATGGGGCTTT
gi|8 : CCATTTCG-CGAC-GGTTG-TT-TTA--TAATGGT-AGAG--G-AACT---ATCGA-AACAGA-CG-CTATCTTACC-GGA-TTGACCAGG--GGG-GC-CCAAGATG-TAA--TTG--T-G-T-ACACAT--AGA--AATA-C-CAAG-AA-------T-AACA-GTG-TT--TGAAGTTGGAAA-TCTACGTGT--ATC---------G-TTTTCAGAGA---AAGATTC-ATA-AA-AGCAAAT------GTCA-AATCATGA---A---TTTAT------CTAAAA----TTATACGTGTTTA--C-TG-T--TT-C-A-TGAAT-TTA-TTACGATGA----TTTGAGGACGT----ATTAGC
gi|9 : ggTTTCA--GATATTT-AATTCAGATAATT-ATTCGAC-----TCAAAA-------TTAA-----------GAAGACAAATCA-TACC-------------ATCTTTGCG-----GTAGATGAA-AGGGG---TTG-ATATTT----GTGTA-GTT--AA-TTGC-TA-T----CAAAACATTCC-G-ATC----TTG-GA-TACCC-ACTTACCCAGTGGATG-CA--CT-----T-AGC-C-----ACAT-CT-GTCA-ATCAA-AGCCTGA-AC----AATTGTCTC-TTGT-G--TGAT-TGA--CGTG--CGGTATA-T-GTT---TTTG-AT-----CT-CC-ATCCAG--GTAAATTT-T-AAGGG--AGGTGGCT-TA--AAATTGGGTCTTTcagatgaagaattg
blockSeqs : A C G C G A A C CG G GT T T T T T T AGGCTAGCT A TT GT ATCAC T TT CA A AAATCATC C TA C G AGCGCCGCG . TCA T T T G TTGCCG G C ATTG GCTCGA TGAT TACGTGT TT A G GA A A T A A TGTG CCATG GCAATCTGA A GT TC TT C GTT T T ACTT A AT TT AT A A G A TG TCGT AG T C GA C AT CTGATAT C T A GG A T A C G T ATATT AT GG G AA GTGT ACAT C AC TTGC G GGGGT A GTT A G G TC C T TGA AG AG ATA GTGG G AACG TCTT C TC T GG C CTCTTCGGTACTCACTACTTAC AA GAA T TT TAAAAAAATTAAATAT T T AA C TA G TCTCGTCTCGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A AAAAA A TTAG T T T G T GT A GT C A A TTTTTTTATTTTCC CAG GG A CAGA A ATAGAG C AC A G TTT CCC AAG AA AA A T C GC T A ATT G TACATTAATTTTGTTTTTTAAA T G A TGTCT T C TGG TCC C T C ATCA C GT AC C A TGAC A C AC AGACTG G T CTTACCCA GGA ACAACTGGAGATACT GT T T GC C C CCCT T CCTAT C AA A AC TA G A GTG T ATACA . T CC T G GA AC A AT A
blockSeqs : . C G C . . A . . . T . . . . T G GCTGT . TT . GCTA . . . . TG . . . G . . . . A . . C . C TTTA . . . . . A . . . T A . G T TC . T T . T AT . . . . AT TT AT . A . T T . . C C G . A . T . A . A . . . . G . AT . A . . AAA T A . A TT . . . . . . . . T . . . A . . TC . T T . . . A A T T TG T . T T AG G TGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . TA A . T T . . . T . . . . . AATTTATT . . . TG . . . . . T TT . . A A C . C . . A AT G ATTAATTAAAAAAAAAAA . G . . T C AGG . C . T . . GT A . . . A . C TAG . . . . ACTTCCTCGGAT T . . T C . . . ATAT . . T . . . . . . . . . . T . T G . . C
blockSeqs : . G C C . . T . . . T . . . . T . GGGGC . T . CTA . . . . T . . . C . . . . A . . C . T A . . . . . A . . . T G . T T TC . A T . G TT . . . . T T . . A . G T . . . . C . . . T . . . A . . . . . . CA . G . . AA T A . G G . . . . . . . . T . . . . . . TA . T . . . . . . C . TG . . A T A G . T T . . . . . . T . . . . . ATTAT . . . AT . . . . . . T . . A T G . . . . . A . TCAAAATTAAGAAGACAA . . . . . . AG . T . C . . G C . . . A . A CGA . . . . TCACACTTCTC . . . G C . . . ATT . . A . . . . . . . . . . . . C . . . A
blockSeqs : . . G T . . . . . . C . . . . . . . . T . TG . . . . T . . . G . . . . A . . C . C A . . . . . A . . . . A . T T . . . T . . T . . . . A T . . . . C . . . . . . G . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . G . . . . A . . . . . . . . . . ATT . . . TG . . . . . . . . . A . . AG . T . C . . G A . . . A . A TTG . . . . ACACTCAGCT . . . G C . . . GTT . . T . . . . . . . . . . . . C . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . G . . . T . . . A . . . A . C TC . . . . ACAATAGCT . . . C C . . . GCT . . G . . . . . . . . . . . . T . . . T
blockSeqs : . . G . . . . . . . A . . . A . A TG . . . . CACTCAACT . . . G C . . . GTG . . T . . . . . . . . . . . . A . . . T
blockSeqs : . . . . . . . TC . . . . CACTTAGCC . . . A . . . . GTG . . A . . . . . . . . . . . . C . . . A
blockSeqs : . . . . . . . . TT . . A . . . . . . . . . . . . A . . . T
blockSeqs : . . . . . T . . . . . . . . . . . . A . . .
blockSeqCons : CTA*** T* T** AT T* ** AA** A* ***** TG***************** A** ATTATT********** TG*** T*** AG* GT
originalCons : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATC---------G-TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTA-NTTTTTTA-AA-AA----CTTTTT-GTATATTTCTAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAA-CGTGTGTAATCA-ATG----CAGCT---GTGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAA----N--TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAA-GGAAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGC-TA-T----CAAAACATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
finalCons : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTGCTA---T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATC---------G-TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---A---TTTAT------CTAAAA----TTA-------TTA--C-TGAT--TA-C-ATTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANTAT--TTTTTA-AA-AA----CTTTTT-GTATAT-TCTA--CGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAA--CGTGTGTAATCA-ATG----CAGCT-----GC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACTTG-----------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATAA--CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAAATTATT----------ATA---ATGTTTTCC--GAC-AATG---AC-TG------TTCT-T--GTGGGA-TGCGCGT---GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAAAG-AAT---TCG-GCACGC----GTGCG-GTTGTAA-TTGC-TA-T----CAAAACATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 1 111111111 11 111111 11 11 222222222 11 333333333 111 111111 111 111 111111 2222222222222222 11 1111 11111 222222222 11 11 1111 1111 1111 33 1 2222 11 11 1 11 2222222 1 11 1 22222 11 11 1111 22 22222222 33333 111 11 111 11 11 111 2222 1111 1111 11 1 8888888888888888888888 11 111 11 5555555555555555555 11 111 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 2222 11 333333333333333 111 11 1111 222222 11 1111 111 111 1 1 11 1111 66666666666666666666666666666666666666666 1 1 444444 111 1111111 11 1111 11 11111111 1 11111111 333333333333333333333333 11 11111
lowQualScore : 8 0 2 1 6 6 0 6 99 6 88 6 6 6 6 7 3 666666666 8 11 11 444444 8 11 11 8 0 0 888888888 8 11 0 8 2 333333333 111 6 3 6 6 777777 6 1 111 000 666666 6666666666666666 6 1 99 6 44 1 6 4444 55555 666666666 8 44 88 11 1 9999 8 8 7777 0 8 8888 8 33 8 0 0 0 8 1 88 1111 33 6 2 00 0 11 6666666 3 8 0 11 3 8 0 8 8 0 8 6 00000 11 0 11 1 0 11 7777 11 0 3 99999999 8 8 11111 8 444 8 8 8 11 8 8 111 11 11 444 5555 8 7777 0 1111 8 88 0 5 33 0 8888888888888888888888 33 777 1 33 5555555555555555555 0 5 8 44 3 0 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 1 1111 3 3 0 8 8 8 88 8 11 0 0 8 8 8 888888888888888 444 11 8 7777 8 333333 8 11 8 8 9999 0 444 444 88 99 0 0 2 11 0 8 3 4444 2 77777777777777777777777777777777777777777 0 2 0 000000 3 2 1 8 000 4 1 2222222 5 66 55 5 5 0000 3 5 00 44444444 0 5 88888888 888 222222222222222222222222 00 4 4 77 1 4 8888 4 888888 4 55 1 55 55 4 4 777 4 00000 4 4 55 0 8 4 55 99 4 55 1
lowQualScore : . . . . . . . . .. . .. . . . . . . ......... . .. .. ...... . .. .. . . . ......... . .. . . . ......... ... . . . . ...... . . ... ... ...... ................ . . .. . .. . . .... ..... ......... . .. .. .. . .... . . .... . . .... . .. . . . . . . .. .... .. . . .. . .. ....... . . . .. . . . . . . . . ..... .. . .. . . .. .... .. . . ........ . . ..... . ... . . . .. . . ... .. .. ... .... . .... . .... . .. . . .. . ...................... .. ... . .. ................... . . . .. . . ... . .......................................................................................... . ...... . .... . . . . . . .. . .. . . . . . ............... ... .. . .... . ...... . .. . . .... . ... ... .. .. . . . .. . . . .... . ......................................... . . . ...... . . . . ... . . ....... . .. .. . . .... . . .. ........ . . ........ ... ........................ .. . . .. . . .... . ...... . .. . .. .. . . ... . ..... . . .. . . . .. .. . .. .
lowQualScore : 0 8 5 0 7 7 0 7 22 7 33 7 7 7 7 3 3 333333333 0 66 00 000000 0 00 00 0 8 8 000000000 0 00 8 0 5 333333333 777 7 5 7 7 777777 7 0 777 000 444444 2222222222222222 7 7 22 7 00 7 7 8888 88888 888888888 0 00 88 00 0 8888 0 0 0000 8 0 2222 0 00 0 8 6 6 0 0 88 2222 88 5 5 22 0 22 0000000 8 0 6 00 8 0 8 0 0 8 0 0 00000 66 8 00 4 8 00 0000 66 8 8 00000000 0 0 00000 0 000 0 0 0 00 0 0 888 00 00 000 0000 0 0000 8 8888 0 88 6 6 88 0 8888888888888888888888 22 000 2 22 0000000000000000000 8 6 0 00 8 8 000 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888888 0 2222 2 2 8 0 0 0 88 0 00 8 8 0 0 0 222222222222222 000 00 0 2222 0 000000 0 00 0 8 8888 6 000 000 88 44 8 0 5 00 8 0 2 2222 5 55555555555555555555555555555555555555555 0 5 0 555555 2 5 4 7 000 0 7 3333333 7 11 11 0 0 6666 2 0 66 88888888 0 0 11111111 888 888888888888888888888888 66 4 4 33 1 4 5555 0 999999 0 55 0 55 55 0 0 000 0 00000 0 0 55 7 0 0 00 55 0 55 0
consensus : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATCG---------TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANT-A--TTTTTTA-AA-AA----CTTTTT-GTATATTTC-TAATCGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATCAAACGTGTGTAATCAA--------TG-C-AGCTG---TGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAAA-T---TTATT----ATA---ATGTTTTCC--GAC-AAC-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAAAGGAT---TCGGCACGC----G--TGCG-GTTGTAA-TTGC-TA-T----CAAAACATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
Reference ( family-2645 ) : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GCT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATCG---------TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAAT-TTGCA--AANT-A--TTTTTTA-AA-AA----CTTTTT-GTATA-TTC-TA--CGCTTCT-CAATTAGACC-GNGT-GAGGAGAGAC----TGAATATT--ATCGACGGACG-GT-GA-CGAG-------ATTTA-CTGCATTT--CACAAATATC-ACTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCGAAAG--GGGG----AAAATC-AACGTGTGTAATCAA--------TG-C-AGC-----TGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTGAAACAAG-TTTTCAATTATGACT---TG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-A-CGGGTTACACAT---C------CGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAT-TTTTT----T-AAANAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCC-AAAAAA-----TTATT----ATA---ATGTTTTCC--GAC-AAT-G--AC-TG------TTCT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTGACCTTNTG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATT-AT-CGAC-----TCAAAA-------TTAA-----------AAA-----ACCA-TACCGCA-GCG-T----ATCTCTGCGCTGCGGTAGATGAAAGAAT---TCGGCACGC----G--TGCG-GTTGTAA-TTGC-TA-T----CAAAACATTAC-G-CTC----T-G-GA-TGTCC-A--------GT---TG-CA-ACT-----T-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTC-TTGT-T--TGAT-TGA--CANG--CGG--TA-T-GTT---TTTG-AT-----CT-CC-GTCCAG--GTAAA-TT-T-NAGGG--AGGTGGCT-TA--AAANTGGGTCTTT
gi|1 : GCCCCATTTCG-CGACCGGTCG-TTATTAA-TAA-GGT-AGGC--G-AACC-TAATCGA-AACAGA-CG-TTATC-TACCTGGA-TTGACCAGG--GTT-GC-CC-AGGTGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAACGTG-TT--AGAAGTTGGAAA-TCTACGTGTTCATCGT--------TTT---GAGAA-CAAGATTCAATA-AA-AGCTAATC-----GTCA-AGTCATAA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCAT----TC---GGAAGAT-TA-TGAA--TTGCA--AAGT-A--ATTTCTA-AA-AA----CTTTTT-GTATATTTC-TAATCGCTTCT-CAATTCG-CC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGACA-GT-GA-CGAG-------ATTTA-CTGCATTT--CAC--ATATC-ATTTGCATTCAG-AGTT-TATAAA-CA-CAT-----TTCAACATGTTATT--TTCAAAAA--GGGG----AAAATCAAACGTGTGTAATC-A--------TG-C-AGCTG---TGC-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TA---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGATTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACAGAAACAAG-TTTTCAATTATGACTAAATG--------------GTTCTTTATTGGA-TCTTG-AAAGAAATATATA-G-C-GGTTACACA-------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTT----T-AAATTAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAA-CGTTG-TCC-AAAAAT-----TTA-T----ATA---ATGTTTTCT--GAC-AATGG--AC-TG------TTTT-T--GTGGGA-TGCGCG-T--GAACAGTGATTTTTTAGGACATTC---TCT---TCGGGTT-ACAAAT-CAGCTATGACTGACCAT-TG-TCTAATTTTCA--AATATTT-AGTTCAGGTAATTCAT-CGAC-----TCATAATTTTTTTTTAG-----------AAA-----ACCA-TACCGCA-GCGTT----ATCTCTGCGCTGCGGTAGATG-AAGAAT---TCGGCACGC----G--TGCG-GTTGTAA-TTGG-TA-T----C-AAACATTAC-G-CTC----T-G-GAGTGTCC-A--------GT---TG-CA-ACT-----C-A-C-T-----AAA--CT-GTCA-ATCAG-AATCTGA-GC----TATTGTCTT-TTAT-T--TGAT-TGA--CAAG--CGG--TA-T-GTT---TTTG-AT-----CTGCT-GTC-----GT-AA-TT-T-GA-GG--AGGTGGCT-TA--AAAATGGGTGTTT
gi|10 : GATGAA-GAAT---TCGGTACACATCAG--TGCG-GGTG-AA-TTGCCTA-A----TAGAACGTTACCG-CTCAGACT-G-GA-TGTCCTA--------GT---TGACA-ACTGGAGAT-A-C-T-----AAA--TT-GTCG-AATAGCAAT-TGA-GC----TATTGTCTC-TT-T-T--TGATCTGG--CAAGACCGG--TAGT-GTTGTGTTAG-AG-----AT-TC-GT-CAG----AAA-TT-TGAAGGG--AGGTGGCTATAATAAAATGGGT
gi|11 : GCGGTAGATGAGTGGGG---TTGATATAC----A--CGTA-GTC--AC-TGGC-TA-TTGACCACCACATCAT-A-ATT----T-C-GA-TATCC-A--------GC---TGTCACACT-----T-C-T-C-----AAAGTCT-GTCA-ATCAT-CGTCTGA-AT----TATTG---------------AT-TGG--CATC--TGG--TA-TAGTT---TGTA-CA-----CT-CC----CAG--GTAAA-TT-T-TAGGGG-AGGTGCCT-TA--AAACTTGGTTTTggttta
gi|12 : tcAGATGAA-GAAT---T--GCACGC----G--TGCG-GTTGTAA-TTGC-TA-T----C--AACATTAC-G--TC----T-G-GAGTGTCC-A--------GT---TGACA-A-------T-AGC-T-----AAA--CT-GTCA-GTC-G-AATCTGA-GC----TATTGTCTCTTTAT-T--TGAT-TGA--CAAG---GG--TA-T-TGT---TTTG-AT-----CT-CT-GTCC------GAA-TT-T-CAAGGACAGGTGGCT-TA--AAAAAGGcaaa
gi|13 : AA-ATGC-TA-T----CAAAACATTCC-A-ATT----TAG-GA-TGCCC-A--------GT---TT----ACT-----T-C-C-TCGGATAAG--CTTGTAA-AGTAG-AACCTGA-GC----TATTCCCTT-TTGT-T--TTAT-TG----ATG--C----CA-T-TTC---ATTG-ACATACACT-AT-ATCCAG--GTAAA-TTGT-CAGGG--AGGTGACT-CA--AAATTGGGTCtgtgttaa
gi|14 : -----T-A-CGT-----AAA------TCA-ATCAC-A-TCGGACAC----TATTGTTTT-TTGC-T--TGAT-TGA--CAGG--TGA--TA-T-GTT---ACAG-AT-----CT-CT-GGATAA--GTAAA-TT-T-TCTGG--GCGCCACC-AA--AAATCAGGTCTTT
gi|15 : agtgggaaatgcccttggcTTTCTGTC-GA-GGTTAGCGA--CGT-ATG--TCT-GGCTC-TCGATGGCAAAG-CATTG-TC------AATTTTTTTATTTTCCATA---ATGTTTTCCGGGACAAAT-G--ACATG------TTCT-TACGCGGGA-TGCaa
gi|16 : ----TATTGTCTC-TTGT-G--TGAT-TGA--CGTG--CGG--T----GTT---TTTG-AT-----AT-CC-GTCCAG--GTAAATTT-T-AAGGG--AGGTGGCC-TA--AAATTGGGTCTTTct
gi|17 : CCATTTCG---AC-GGT-G-TTATTAAATAAAGGT-AGGC--G-AACC-TAATCG---ACAGA-CG-GT-TC-TACC-----TTGACCAGG--Ga
gi|18 : aaagg-T--GAACAGTGAGTTTAGAGGACATTCCCCTCT---TCAGGTT-ACAAAAACAGCTATGACTGACTTTATGTTCTAATgg
gi|19 : CAATTATGACT----G--------------GTTCTTTATTGGA-TCTTG-TAAGAAA-ATATA-A-C-AGTTGCAC
gi|2 : CGGTC---TATTAA-TAAAGGTCAGGCCGG-AATCGTAAATGATAACAGATCG-TTATC-TAT-TGGC-TTGATCAAGAGGCTAGCTCC-AGGTGTTTAGTTTG-ATCACT-ACACAT--AGACAAATAACACAGGAAAAAATCATC-AAAACGTG-TTTAGGAAGTTGGAAA-TCTACGTGTTAATCAGCGCCGCGATTT---GAGAA-CA-GATTCTATA-AAGAGCAAATTTGCCGGTTAGAGT-ATGA---ATTGTTTATGCTCGACTGTAATGA-------TTTATGA--CATGGTGATG-CAATTG-TT-TTATTTACGATGATGTGTTTGAGGACGCCATGTATATCATGCAATCTGAGGAAGATATAGTGATT-TTG-ATTAACT-AGTTTTTTTA-GATAA----C-TTTT-GT--------TA--TGCTTCT-C-ATTAGACCGGAGT-GAGAGGAGACTCGTTAGATATTAGATTGG-GGACG-GTCGATTGAGCTGATATACTTA-CTGC--TT--CACAACTATC-AC-TGCATTCAGAAGTTCTATAAAGTATCAT-----TTCAA---GTTATTGGTTCGAAAGAAGGGGGTGTGAAATC--ACAT-TGTGCTCGATTACATATTGCC-GGCTGGGGTGCAATAGGTTCCGG-AGTGT-TCTCATCACA-TATGATTTGCAAGCTAGTTATATGTATGTGGAGGTTT---TGCGAGAGCATTTAACGTAAGACAATCTTTTGCTAG--CTATCCAT
gi|2 : aaggagatgttcgcgacggattggtgcttgtttAT-TTTTT----T-AAAAAAGTTAGATTTTGAAAGAATATTTGTCGTCTGA-GGT-AGCGAGTCGTACAGGTTCGAGGTTCCTCGATACGAAAG-CGTGGATCC-AAAAAAAT---TTATT----ATACAGAT-TTTTCC--AGT-AAC-AGAAC-TGATAGAGTTCT-T--GTGGGAATGCGCG-TTTGAACC-TGATTTTTTAGGACATTC---TCTAAGTCGGGTT--CAAAA-CAGTGATGACTGACCTTCTG-TCTAATTTTCAGCAATATTT-Aaaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttatttttttaaaaaagttagattttgaaagaatatttgtcgtctgaggtagcgagtcgtacaggttcgaggttcctcgatacgaaagcgtggatccaaaaaaatttattatacagatttttccagtaacagaactgatagagttcttgtgggaatgcgcgtttgaacctgattttttaggacattctctaagtcgggttcaaaacagtgatgactgaccttctgtctaattttcagcaatattta
gi|3 : aaggagatgttcgcgacggattggtgcttgtttcggtctattaataaaggtcaggccggaatcgtaaatgataacagatcgttatctattggcttgatcaagaggctagctccaggtgtttagtttgatcactacacatagacaaataacacaggaaaaaatcatcaaaacgtgtttaggaagttggaaatctacgtgttaatcagcgccgcgatttgagaacagattctataaagagcaaatttgccggttagagtatgaattgtttatgctcgactgtaatgatttatgacatggtgatgcaattgttttatttacgatgatgtgtttgaggacgccatgtatatcatgcaatctgaggaagatatagtgattttgattaactagtttttttagataacttttgttatgcttctcattagaccggagtgagaggagactcgttagatattagattggggacggtcgattgagctgatatacttactgcttcacaactatcactgcattcagaagttctataaagtatcatttcaagttattggttcgaaagaagggggtgtgaaatcacattgtgctcgattacatattgccggctggggtgcaataggttccggagtgttctcatcacatatgatttgcaagctagttatatgtatgtggaggttttgcgagagcatttaacgtaagacaatcttttgctagctatccataaagatggatgtattagatcaacttatagaataggtgaaaagaactgtgcagctgaaaactaggaaccattgctttagtcaagttcttcatttgacttgggtttaattttataaaatataggcgggtttcaatatttacatcagcttatctgctctctctctctgtccctcctctcttagctctctcctcttcaagtctcttttgctctctcgattgcttCCATTT-G-CGACCG-TCG-TTATTAA-TAC-GGT-AGGC--GGAACC-TAATCGA-AACAGA-CGTTTATC-TACCTGGATTTGACCAGG--GCT-GT-CC-A--TGTTAA--TTG-CT-A-T-ACACAT--AGA--AATA-CACAGGAAA-------T-AAAGCGTGCTT--AGAAGTT-GAAA-TCTAC-TGTTCATCG---------GCT---GAGAATCAAGA-TCA--A-AA-TGCTAATC-----GTCA---TCA-GA---ATT---TAT------CTAAAAATA--------T----A--C-TGAT--TA-CA--TGATTATTAT---CGA-GAG---TGTGAGGACG-----TATAGCAT----TC---GGAAGAT-TA--GAAT-TTGCA--AATTGA--TTTTCTATAA-AA----CTTTTT--TATA-TTC-TAATCGCTTCT-CAATTCGACC-GTG--AAGGAGAGAC----TGAATATT--AT-GACGGACGAGT-G--CGAT-------A--TA-CTGCATTT--CACAAATATCTACTTGCATTCAG-AGTT-TATAAA-CAGCAT-----TTCAACATG-TATT--TC--AAAG--GGGG----AAAATC-AACTTGTG-AATCAA--------TG-CAAGC-----GGC-ATGG---CCCGAA-TGTGTCTGA--A-ATGA---TTTGCA--CT--TT---TGTATA---CGGTTGGCGCGCACGAG-ATTT----CAAGA-AA-----CG-TA-T----------TGATTGA--CACTGCACGCGA----------------------CTGTCAAACGAAAAACTAAAACAAG--TTTCAATTAT-ACT---TG--------------GTTC--TATTGGATTCTTGAAAAGAAACATATATA-CGGGTTACACAT---CTCGTCTCGGGTACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGATATTTTT----TAAAAAAAG----A--TTGAAAGAAAA-TTTCTG-C-GAGGGT-A-CGA-TC-T-CAG--TCCAGGC-CCTCGATGACAAAGCCGTTG-TCC-AAAAA--------ATT----ATA---ATGTTTTCC--GAC-AAA-T--AC-TG------TTTTCT--GTGGCT-TGCTTG------ACAGTTATTTTTTA-GACGTTC---TCT---TCGGGTTAACAAAT-CA--CATGA-TAGCCTTGGG-T---ATTTTCA--AATA-TT-AGTTC-CGTAATT-A--CGAC-----T--ACA-------TTAATTTTGTTTTTTAAA-----ACCATTACCGCA-GCG------ATCTC-GCGCTTCGTT-GAT--AAGAATTCCTCGGCA-GC----G--T-CG-GTTG-A---TG--TA-T----CAAAACATTAC-G-CTC----C-GAGG-TGTCC-A--------GT---TG-C--ACT-----CAA-C-T-----AAA--CT--TCATATCA--AAT-TGA-GC----TA-TGTC-C-TTATAT--TGAT-T-A--CAAT--C-G--TA-T-G-T---TTTG-AT-----CT-CT-GTCCAGCCG-AAA-TT-T-CAGGT--ATGTGGCT-CA--A
gi|4 : CGTGTTCATCG---------TTT---GAGAA-CAAGATTCAATA-AA-AGCAAATC-----GTCA-AGTCATGA---ATT---TAT------CTAAAATTA-------TT----A--C-TGAT--TA-CA-TTGATT-TTATTTACGATGAT---TTTGAGGACGT----TATAGCCA----TC---GGAAGAT-TA-TGAAT-TTGCA--AAGT-A--TTTTTTA-AA-AA----CTTTTT-GTATATTTC-TAATCGCTTCT-CAATTAGACC-GGGT-GAGGAGAGAC----TGAATATT--ATCGACGGAAC-GT-GA-CGAG-------ATTTA-CTGCATTA--CACAAATATC-ACTTGCATTCAG-AGTT-TAT-AA-CA-CAT-----TTCAACATGTTATT--TTCAAAAG--GGCG----AAAATCAAACGTGTGTAATCAA--------TG-C-AGC-----T-C-ATGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--CT--TT---TGTAT----CGGTTTGC-CGCACGAGCATTT----CAAGACAATC--TTG-TAGT-CTATCAATGTGACTGA--CACTGCACG-GA----------------------CTGTC-AAC--AAAACTAGAACAAG-TTTTCAATTATGACT---TG--------------G----TTATTGGA-TCTTG-AAAGAAATAT-TA-AGCGGGTTACACATGCGC------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-TTTTTAAAAA-AAATAAG----ATTTTGAAAGAAAATTTTCTGTC-GA-GGT-AGCGA-TCGT-CAG--TCCAGGCTCCTCGATGGCAAAG-CGTTG-TCCAAAAAAA-----TTA-T----ATA---ATGTTTTCC--GAC-AAT-G--AC-TG------TTCT-T--GTGGGG-TGC-CGTT--GGACAGTGATTTTTGAGGACATTC---TCT---TCGGGTT-ACAAAA-CAGCTATGACTG
gi|5 : GCCCCATTTCGACGACGGCTCGGTTATTAA-TAA-G-T-AGCG--G-AGGC-CAATCGA-A-CAGA-CG-TTATC-TACCTGGAGTTGACC----------------GGCGT-AA--TTGGCT-A-TTACACATTTAGA--AATA-CA--GGAAA-------TGAAAAC-TG-TT--AGA-GTTGGAAACTCTACCTGTTCATCG---------TTT---GAG-A-CAA-ATTCAATATAA-ATCAATTC-----GTCA-AGTTCTGATTTATG---TAT------ATAAAA
gi|5 : ---TAT------CTGAAATTA-------TT----ATTC-TGAT--TAACA-TTGGTT-TTATTTACGATGAT---TTTGAGGACGT----TGC--CAT----------GAAGAT-TT-AGAATCTTGCC--AAAT----TTTTTTA-AA-AAACTTCTTTTTAGTA-A-TTCGTA--TACTTGTACACTTAG-CC-ACGTGGAGGggcgacgagtacaatgtataaaccgctatctgaaattattattctgattaacattggttttatttacgatgattttgaggacgttgccatgaagatttagaatcttgccaaatttttttaaaaaacttctttttagtaattcgtatacttgtacacttagccacgtggagg
gi|6 : gccccatttcgacgacggctcggttattaataagtagcggaggccaatcgaacagacgttatctacctggagttgaccggcgtaattggctattacacatttagaaatacaggaaatgaaaactgttagagttggaaactctacctgttcatcgtttgagacaaattcaatataaatcaattcgtcaagttctgatttatgtatataaaaggcgacgagtacaatgtataaaccgc-CGAG-------ATTTATCTGC-TTTGGCACGAAAATC-ACTTGCATTCAG-AATT-TAAAAA-AA-AATATATTTTCAACCAGTTATT--TTCGAA---------------------CGCGTGTAATCAA--------TG-C-ATT-----TGC-TCGG---CCCG-A-TGT-TCTGA--A-A-GAT--TTTGCA--TT--TT---TAAAT----CGATATGC-CGCTCGATCATTT----CGAGAC-ATA--TGG-TAGTCCTATCAA-GTGGCTGAGGGACTAAAAG-GACTCTTCGGTACTCACTACTTACCTGTC--AC---AAACCGAAACAAATTTTTCAATTATGGCT---TAAAAAAATTAAATATGTTCTTTATTGGA-TCTTG--AAGAAATATATA-A-CGGGTTGC
gi|7 : tatcatTCA--AATATTTTAGCTCAGGTAATT-AT-C-ACATTAATTAAAA-------AAAA-----------AAA-----ACCA-TACCGCAAGCG-TGTCTATCTCTGCGCTGCGGTAGATGAAAGGAT---TTTGTGCGC----GCTTGCGCGTTGTAACTTGC-TAAT----CAAAACATTAC-GACTC----T-C-GA-TGTCC-A--------GT---TG-AC-ACT-----C-AGC-T-----ACA--CT-GTCA-ATCAG-AATCTGA-GCCCCTTATTGTTCC-TTCC-TATTGAT-TGAAACAAG--CGG--TA-T-GTT---TTTGTAT-----CT-TCTGTCCAG--GTAAA-TT-C-AAGGG--AGGTGGCT-TA--AAAATGGGGCTTT
gi|8 : CCATTTCG-CGAC-GGTTG-TT-TTA--TAATGGT-AGAG--G-AACT---ATCGA-AACAGA-CG-CTATCTTACC-GGA-TTGACCAGG--GGG-GC-CCAAGATG-TAA--TTG--T-G-T-ACACAT--AGA--AATA-C-CAAG-AA-------T-AACA-GTG-TT--TGAAGTTGGAAA-TCTACGTGT--ATCG---------TTTTCAGAGA---AAGATTC-ATA-AA-AGCAAAT------GTCA-AATCATGA---ATT---TAT------CTAAAATTATACGTGTTT----A--C-TG-T--TT-CA--TGAAT-TTA-TTACGATGA----TTTGAGGACGT----ATTAGC
gi|9 : ggTTTCA--GATATTT-AATTCAGATAATT-ATTCGAC-----TCAAAA-------TTAA-----------GAAGACAAATCA-TACC-------------ATCTTTGCG-----GTAGATGAAAGGGG---TTGATATTT----G--TGTA-GTT--AA-TTGC-TA-T----CAAAACATTCC-G-ATC----TTG-GA-TACCC-ACTTACCCAGTGGATG-CA--CT-----T-AGC-C-----ACAT-CT-GTCA-ATCAA-AGCCTGA-AC----AATTGTCTC-TTGT-G--TGAT-TGA--CGTG--CGGTATA-T-GTT---TTTG-AT-----CT-CC-ATCCAG--GTAAATTT-T-AAGGG--AGGTGGCT-TA--AAATTGGGTCTTTcagatgaagaattg