lowQualScore : 222222222222222222222222222222222222222 33333333333333333333333333333333333333333333333333333
lowQualScore : 555555555555555 111 3333 22 1 11 11111 1 11 222222222222222222222222222222222222222 11 1 22222 11111 7777777777777777 1 22222 11 33 777777777777777777777777777777 11 2222 88888888888888888888888888888 66666666 111 3333333 1111111 333 333 11 3333333333 1 222 333333 4444 5555555555555555555555 3333333333 11 11 11 4444 3333 22222 9999999 1 111 33333333333333333333333333333333333333333333333333333
lowQualScore : 7 8 3 6 333333333333333 777 0 4444 0 5555 55 0 33 99999 77 0 0 33 777777777777777777777777777777777777777 11 8 8 6 0 3 88888 44444 1111111111111111 5 3 0 33333 2 22 00 111111111111111111111111111111 333 33 3 2222 22222222222222222222222222222 00000000 0 4 777 4 2222222 8888888 5 4 3 111 6 555 99 4 9999999999 5 222 7 777777 0000 0 4444444444444444444444 9999999999 77 8 11 8 8 3 5 44 88 8 0000 7 5555 77777 7 8888888 3 2 7 666 99999999999999999999999999999999999999999999999999999 6 6
lowQualScore : . . . . ............... ... . .... . .... .. . .. ..... .. . . .. ....................................... .. . . . . . ..... ..... ................ . . . ..... . .. .. .............................. ... .. . .... ............................. ........ . . ... . ....... ....... . . . ... . ... .. . .......... . ... . ...... .... . ...................... .......... .. . .. . . . . .. .. . .... . .... ..... . ....... . . . ... ..................................................... . .
lowQualScore : 3 0 5 7 000000000000000 000 2 5555 8 0000 00 0 88 00000 22 2 0 88 222222222222222222222222222222222222222 00 0 0 0 0 0 00000 88888 3333333333333333 0 2 2 88888 5 55 00 000000000000000000000000000000 555 88 7 7777 44444444444444444444444444444 66666666 4 5 555 5 5555555 1111111 0 6 2 000 7 333 33 0 0000000000 5 000 3 888888 2222 8 7777777777777777777777 0000000000 22 0 00 2 0 2 6 00 33 3 3333 3 3333 77777 3 0000000 7 3 3 777 00000000000000000000000000000000000000000000000000000 0 0
consensus : AAACACATTGA-CGCAAGCGTCAAAAGAACGGCC-GCAAACCCACTTGTTTCATC-AAG----AGAAATTTGTAAAC--ATGTTTTATGCAATAATG---CAT-ATTTA-ACATTC--TACCAA---CATTGTACA-AT--ATT-------------------TCAAAACC-TTGAAATGAATTT--TTAA-GG-GTACAAACTTTTCTGCGTAGAATANA--TGCCTTT-TGTTAATTCCGCANCTT-GACTT---TT-GTTTACCAAGATTCGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCA-----A------------CAC--ATGAAT-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT---------TNA----GCACCAGACACTCG-G---TCGGCTGTCTCCGC---AAATCTCCG-------ACGGAGACAG------CCGAGTGTCTCGAGCGAAGC-CTCGCGTCGAT-G-CAATGAGAATANCGCTGCATTATACGATTTGGCTGTTTTTATTTCTTGC-ATCGTGTTTTAAATTAAACG-GCCTTTTCTAANCT-----TA-AATANATA-C-TATTTTTTTTAAAAATGGGAAAGCATTTCCCCGCTAA-GAACCA--ACAAA-TTACACTTTTAATCTTTACTTTAT--TTTAC-A--ACATAATAG-N--TTCGCAGA-A---ACACATA-------CNACTTATAGCTTTCATATCA-TGTAAC----CGTCA--CCGTTTCTGCAGC------CGG---TAATAATACGG-----CTACAAATTCTGCTTT
Reference ( gi|1 ) : AAACACATTGA-CGCAAGCGTCAAAAGAACAGCC-GCAAACCCACTTGTTTCATC-AAG----AGAAATTTGTAAAC--ATGTTTCATGCAATAAT----CAT-CTTTA-ACATTC--TACTTA---CATTGTACA-AT--ATT-------------------T-------------------TT--TTAA-GG-GTACAAACTTTTCTCCGTAAAATGCA--TGCCTTT-TGTTAATTCCGCAACTTCGACTTTAATT-GTTTACCAAGATTAGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACAATCAACGTATGCATTTACACTCA-----A------------TAC--ATGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT---------TAA----GCACCAGACACCCGAGG--TCGACTGTCTCCGC---AAATCTCCG-------ACGGAGACAG------TCGAGTGTCTCGGGCGAAGTGCTCGCATCGAT-G-CAATGAGAATATTGCTGCATTATACGA-T-GGCTGTTTTTATTTCTTGCCATC-TGTTTTAAATTAAACGTGCCTTTTCTAAACT-----TA-AATAAATAACATATTTTTTTTAAAAATGG-AAAGCATTTCCCCATTAA-GAACCA--ATAAA-TTACACTTTTAATCTTTACTTTAT--TTTTC-AAGACATAATAG-G--TTCGCAGA-A---ACACATACATGTAACCACTTATAGTTTTCATATCA-TATAACGATATGGCAGTCTTTTTCT-CAGCAGAACATGGGTCTTATCATATGGACAAATTACAAATTCTGTTCTT
gi|15 : AAACACATTGA-CGCAAGTGTCCAAAGAACGGCC-GC-AACCTAC--GTTTCA
gi|2 : acaagAACACATTGA-CGCAAGCGTCAAAAGAACGGCC-GCAAACCCACTTGTTT-------------------TGTAAAC--ATGTTTCATGCAATAAT----CAT-ATTTA-ACATTC--TACCAA---CATTGCACA-AT--ATT-------------------TCAAAACCTTTGAAATGAATTT--TTAA-GG-GTACAAACTTTTCTGCGTAGAATATAAAGGCCTTT-TGTTAATTCCGCGACTT--AC---AATTTGTTTACCAAGATTCAAAATACA----CCCTCCCCCC---AATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCA-----A------------CACTTATAAATATACCTGAACTACATACATGAAAAGTTGCATTTTACTT-T--TAT-------TGGT-----------A----TCACGTGATAATTCAG----C-AC--------C---AGACACCCG-------A---GGTCGG------CCGAGTGTCTCTAGC------CTCGCATCGATTG-CAATGA-AATAACGCTGCATTA--CGA-TTGGCTGTTTT-ATT-CTTGC-GTCATGTTTTAAATCAAAAG--CCTTTTCTAGCCTAGATCTATAATAAATATC-TATTTTTTTTTTAAATGGGAAAGCCTTTCCCCGCTAA-GAACCA--ACAAA-TCG-----TTACTATCTA-TTTAT--TCTAC-A--ATATAATAGAA--TTCGCAGA-ACTTACACATAC------CTACTTATAG-TTTCATATCATTATAAC
gi|3 : AAC-CATTGA-CGCAAGCGTCAAAAGAACGG---GCAAACCCACTTGTTTCATC-AAG----A-AAATTTGTAAATCAATATTTTATGCAGTAATAT--CAT-ATTTA-CAATTC--CACTAA---CATTGTATATAT--ATT-------------------TCAAAACCATTGAAATGAATTT--TTAA-GG-GTACAA-CTTTTCTGCGTAGAATAAA--TGCCTTTGTGTTAATTC------------------T-GTTTACCAAGATTCGAAATGCA-------CCCCCTCCCAAATAATGATAATGTTTTGAACCCTCAACGTATGCATTTGCATTcgacgccttcgcggtaataa
gi|17 : acaagagTTGAACGAAAGCGTCAACAGAACGGCC-GCAAACCCACTtccccact
gi|6 : TGA-CCCAAATATCAAAAGAACAGCCTTCAA--CTATTTGTTTCATCTAAGAATTAGAA----GTAATC--ATGTTTTAGACAATAATGATACATAATTTATACATTCATTATCTAAACCATTA-AAA-ATGAATC-------------------C-------------------TCAAGTAATGGTGTGCAATATCTGTTCTATTACAT-CA--TGTCTTT------GTTCCGCAGTTCAGACTT
gi|8 : AATGAACGGCC-GCAAACCCAATTGTTTCATC-AAA----TGACATTTGTAAAC----------------AAT----CAT-ATTTA-ACATTC--TACTAA---CATTTTACA-AT--ATTTCAAAACCTTTGAAATGAAT-------------------TT--TTAA-GG-GTACAAACTTGTCTGCGTAGAATAAA--TGCCTTT-TGTTAGTTCCGCA
gi|11 : T--TTAA-GA-GTACAAACATTTCTGTGTAGAATA-A--T-----------AATTCCGCATCCTCGACTTT-----GTTTACCAAGATTCGA--TCCC----CCCCCCTCCCCCAA-TAATAATAATGTTTTGAAC
gi|12 : tgTT-GTTTACCAAGATTCGAAATGCAACCTCCCCCTCCCCCCA--TAATAATAATGTTTTGAACCCTCGACGTATGCATTTACTCTCA-----A------------CAC-------T-TA---GAA--ATATACATGAcct
gi|7 : ctTGTTTTGAACCCTCAACGTATGCATAAACACTCA-----ACATTTAAACATATAT--ATGAAT-TACTCAAA--ACATACATGAAAAGTTACTTTTTTCTTGTGGTATAAGGCGATAGT---------TTA----GTACCAGACACTCGAGAGATCGACTTTCTCTGT---AAATCTCCG-------GCGGAGACAG------CCGAGTGTCT
gi|4 : ACACTTAGAAAGA------------TAC--ATGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGTATCACGCAATGATTTTGCACCAGACACCCGATG--TCGGCTGTCTCCGC---AAATCTCCG-------ACGGAGACAG------CCGAGTGTCTCGAGCGAAGC-CTCGCATCGATAG-CAATGAG-ATATTGCTGCAT--TACGATT-GGCTG-TTTTA-TTCTTG-CATCGTGTTTTAAATTAAAC--GCCTTTTCTAAGC------TA-AA
gi|16 : aGT---------TAA------ACCAGACACTCGTGG--T-GACT----CCGC---AAATCTTCG-------ACG
gi|14 : tACCAGACAC--------TCGGTTGTCTACGC---AAATCTCCGGAGATTTACGGAGATAG------CCGAGCGTCTgagatta
gi|14 : tcgtgcaaccACCAGACGC--------TCGGCTATCTCCGT---AAATCTCCGGAGATTTGCGTAGACAA------CCGAGTGTCT-GGTTGAAtgaacgagact
gi|4 : tcgtgcaAGACAC--------TCGGCTGTCTCCGTCGGAGATTT----------GCGGAGACAGCCGACATCGGGTGTCTGGTGCAAAATCATTGCGT-GAT-ACCAATAAAAGTAcgagact
gi|7 : aacacttagaaagatacatgaactactcgaaacatacatgaaaagttgcgtttAGACAC--------TCGGCTGTCTCCGCCGGAGATTT----------ACAGAGAAAG------TCGA-TCTCTCGAGTGcgagcgaagcctcgcatcgatagcaatgagatattgctgcattacgattggctgttttattcttgcatcgtgttttaaattaaacgccttttctaagctaaa
gi|10 : tgttttgaaccctcaacgtatgcataaacactcaacatttaaacatatatatgaattactcaaaacatacatgaaaagttacttttttcttgtggtataaggcgatagtttagtaccagaTTCTTGC-ATCGTGTTTTAAATTAAACG--CTTTTTCTAAAGT-----AA-AATACGT--C-TAATTTTTT---AAATGGGAAAGCACTTCTCCACTAT-AAACCA--ACAAA-TTACACTTTTAATCTTT
gi|13 : TTGC-ATCATGTTTTAAATTAAACG--CCTTT----------------AATATATA-TATATTTTTTTTAA---TGGCAAAGCATTTCTACTCTAA-GAACCA--ACAAA-TTACACTTTTAA
gi|5 : -TGTTTTAAATTAAA--TGCCTTTTCTAATCT-----CA-AATAA-TAA----TTTTTTTTAACCA--G-AAAACATTTCCCCACAGA-GAACTA--AAAAA-TTATACCTTTAAACTTTACTTCTT--TTTAC-TACACATAATAG-T--TTTGCAGA-A---ACACA-A-----AACAACTTACACCTTTCATATCA-TGTAAC
gi|9 : caccaTAACGAACCATAACAAAGTTACAGTTTTA-TCTTT-CTTTATATTTTTCTACAACATA-TAG-GGGTTCGCATATA---ACACTTA-AT----CCACTTATAGTTTTCA-ATCA-T-TAAC----CGTCA--CCGTTTCTGCAGC------CGG---TAATAATACGG-----CTACAAATTCTGCTTcgaccgacttctgtaggccggtaat
Alignments
lowQualScore : 22222222222 11 33 11 11 2222 1111111 11111 333333333333 1111 22222 5555555555555 11 1111 3333333 6666666666666666666666 444444444444444 2222222 222222 2 11 111 333 2222 22222222222 33333 11111111 22222 2222 1 11 11111 5555555555555 1 111 44444444444444444444444444444444 111 55555
lowQualScore : 3 6 5 8 66666666666 11 0 1 0 11 5 00 5 8 00 3333 8 6666666 6 6 1 11111 99 3 333333333333 0 7777 66 00000 2222222222222 8 11 0 4444 2222222 8888888888888888888888 4 444444444444444 1111111 000000 6 6 44 11 333 000 7 7 7 3 6 6 3333 66666666666 8 44444 00000000 4 6 99 6 1 3 55 55555 4444 0 11 88888 2222222222222 1 0 3 111 11111111111111111111111111111111 777 00000
lowQualScore : . . . . ........... .. . . . .. . .. . . .. .... . ....... . . . ..... .. . ............ . .... .. ..... ............. . .. . .... ....... ...................... . ............... ....... ...... . . .. .. ... ... . . . . . . .... ........... . ..... ........ . . .. . . . .. ..... .... . .. ..... ............. . . . ... ................................ ... .....
lowQualScore : 2 7 7 0 22222222222 00 8 8 6 22 0 66 0 0 66 6666 0 0000000 7 7 0 00000 88 8 111111111111 8 0000 44 00000 8888888888888 0 00 2 8888 5555555 2222222222222222222222 2 777777777777777 7777777 000000 0 7 00 77 777 000 3 3 3 2 7 3 7777 88888888888 8 88888 66666666 6 7 22 7 0 2 88 00000 8888 0 00 55555 2222222222222 0 5 2 555 88888888888888888888888888888888 555 00000
consensus : AAACACATTGA-CGCAAGCGTCAAAAGAACGGCCG-CAAACCCACTTGTTTCATC-AAGA----GAAATTTGTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACTAACATTGTACA-ATATTTCAAAACCATTTGAAA-TGAATTTTTAAG----G--GTACAA-A-CTTTTCTGCGTAGAATANA--TGCCTTT-TGTTAATTCCGCAACTTCGACT-TT---TGTTTACCAAGATTCGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCA-----ACACTT----------ATGAAT-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT-------------TNA----GCACCAGACACTC--G--G----TCGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGAT-GCAATGAGAATATCGCTGCATTATACGA-TTGGCTGTTTTTATTTCTTG-CATCGTGTTTTAAATTAAACG-GCCTTTTCTAANCT-----TA-AATANAT-A-C-TATTTTTTTTAAAAATGGGAAAGCATTTCCCCACTAA-GAACCA--ACAAA-TTACACTTTTAATCTTTACTTTAT-----TCTAC-A--ACATA-ATAG-GTTCGCAGA-A---ACAC-AT-------A--CCACTTATAGTTTTCATATCA-TATAAC----CGNCA--CCG-TTTCTGCA-GC------CGG---TAATAATACGGACAAACTACAAATTCTGCTCT
Reference ( family-26 ) : AAACACATTGA-CGCAAGCGTCAAAAGAACGGCCG-CAAACCCACTTGTTTCATC-AAGA----GAAATTTGTAAAC--ATGTTTTATGCAATAATG-CATATTTAACATTCTACCAACATTGTACA-ATATTTCAAAACC-TT-GAAA-TGAATTTTTAAG----G--GTACAA-A-CTTTTCTGCGTAGAATANA--TGCCTTT-TGTTAATTCCGCANCTT-GACT-TT---TGTTTACCAAGATTCGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCA-----ACAC------------ATGAAT-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT-------------TNA----GCACCAGACACTC--G--G----TCGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCGTCGAT-GCAATGAGAATANCGCTGCATTATACGATTTGGCTGTTTTTATTTCTTG-CATCGTGTTTTAAATTAAACG-GCCTTTTCTAANCT-----TA-AATANAT-A-C-TATTTTTTTTAAAAATGGGAAAGCATTTCCCCGCTAA-GAACCA--ACAAA-TTACACTTTTAATCTTTACTTTAT-----TTTAC-A--ACATA-ATAG-NTTCGCAGA-A---ACAC-AT-------A--CNACTTATAGCTTTCATATCA-TGTAAC----CGTCA--CCG-TTTCTGCA-GC------CGG---TAATAATACGG-----CTACAAATTCTGCTTT
gi|1 : AAACACATTGA-CGCAAGCGTCAAAAGAACAGCCG-CAAACCCACTTGTTTCATC-AAGA----GAAATTTGTAAAC--ATGTTTCATGCAATAAT--CATCTTTAACATTCTACTTACATTGTACA-ATATTT---------------------TTTTAAG----G--GTACAA-A-CTTTTCTCCGTAAAATGCA--TGCCTTT-TGTTAATTCCGCAACTTCGACT-TTAATTGTTTACCAAGATTAGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACAATCAACGTATGCATTTACACTCA-----ATAC------------ATGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT-------------TAA----GCACCAGACACCCGAG--G----TCGACTGTCTCCGCAAATCTCCG-------ACGGAGACAGTCGAGTGTCTCGGGCGAAGTGCTCGCATCGAT-GCAATGAGAATATTGCTGCATTATACGA--TGGCTGTTTTTATTTCTTGCCATC-TGTTTTAAATTAAACGTGCCTTTTCTAAACT-----TA-AATAAATAA-CATATTTTTTTTAAAAAT-GGAAAGCATTTCCCCATTAA-GAACCA--ATAAA-TTACACTTTTAATCTTTACTTTAT-----TTTTC-AAGACATA-ATAG-GTTCGCAGA-A---ACAC-ATACATGTAA--CCACTTATAGTTTTCATATCA-TATAACGATATGGCAGTCTT-TTTCT-CA-GCAGAACATGGGTCTTATCATATGGACAAATTACAAATTCTGTTCT
gi|10 : TTCTTG-CATCGTGTTTTAAATTAAACG--CTTTTTCTAAAGT-----AA-AATACGT---C-TAATTTTTT---AAATGGGAAAGCACTTCTCCACTAT-AAACCA--ACAAA-TTACACTTTTAATCTTTt
gi|11 : TTTAAG----A--GTACAA-A-CATTTCTGTGTAGAATAA--------------TAATTCCGCATCCTCGACT-TT----GTTTACCAAGATTCGA--TCCC----CCCCCCTCCCCCAA-TAATAATAATGTTTTGAACCCT
gi|12 : tg-TT---TGTTTACCAAGATTCGAAATGCAACCTCCCCCTCCCCCCA--TAATAATAATGTTTTGAACCCTCGACGTATGCATTTACTCTCA-----ACAC-----------------T-TA---GAA--ATATACATGA
gi|13 : cTTG-CATCATGTTTTAAATTAAACG--CCTTT---AAT-----------ATATAT-A---TATTTTTTTTAA---TGGCAAAGCATTTCTACTCTAA-GAACCA--ACAAA-TTACACTTTTAA
gi|14 : GT-------------TCA------ACCAGACACTC--G--G----T----TGTCTACGCAAATCTCCGGAGATTTACGGAGATAGCCGAGCGTCT
gi|15 : tcgtgcaaccAAACACATTGA-CGCAAGTGTCCAAAGAACGGCCG-C-AACCTAC--GTTTCAgagact
gi|16 : acaagGT-------------TAA------ACCAGACACTC--G--------TGG-TGACTCCGCAAATCTTCG-------ACG
gi|17 : tTTGAACGAAAGCGTCAACAGAACGGCCG-CAAACCCACTgagatta
gi|2 : AACACATTGA-CGCAAGCGTCAAAAGAACGGCCG-CAAACCCACTTGTTT-------------------TGTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACCAACATTGCACA-ATATTTCAAAACC-TTTGAAA-TGAATTTTTAAG----G--GTACAA-A-CTTTTCTGCGTAGAATATAAAGGCCTTT-TGTTAATTCCGCGACTT--ACAATT---TGTTTACCAAGATTCAAAATACA----CCCTCCCCCC---AATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCA-----ACACTT----------ATAAATATACCTGAACTACATACATGAAAAGTTGCATTTTACTT-T--TAT-------TGGTATCACGTGATAATTCA----GCACCAGACAC--------------------------------CCG-------A---GGTCGGCCGAGTGTCTCTAGC------CTCGCATCGATTGCAATGA-AATAACGCTGCATTA--CGATT-GGCTGTTTT-ATT-CTTG-CGTCATGTTTTAAATCAAA-A-GCCTTTTCTAGCCTAGATCTATAATAAAT-ATC-TATTTTTTTTTTAAATGGGAAAGCCTTTCCCCGCTAA-GAACCA--ACAAA-TCG-----TTACTATCTA-TTTAT-----TCTAC-A--ATATA-ATAGAATTCGCAGA-ACTTACAC-AT-------AC-CTACTTATAG-TTTCATATCATTATAAC----CGACG--CC---TTC-G-----------CGG---TAATAA
gi|3 : AAC-CATTGA-CGCAAGCGTCAAAAGAACGG--G-CAAACCCACTTGTTTCATC-AAGA-----AAATTTGTAAATCAATATTTTATGCAGTAATATCATATTTACAATTCCACTAACATTGTATATATATTTCAAAACCATT-GAAA-TGAATTTTTAAG----G--GTAC-A-A-CTTTTCTGCGTAGAATAAA--TGCCTTTGTGTTAATTC-------------------TGTTTACCAAGATTCGAAATGCA-------CCCCCTCCCAAATAATGATAATGTTTTGAACCCTCAACGTATGCATTTGCATT
gi|4 : acaagagACACTTAGAAAGATAC------------ATGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGTATCACGCAA----TGATTTTGCACCAGACACCC--GATG----TCGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGATAGCAATGAG-ATATTGCTGCAT--TACGA-TTGGCTG-TTTTA-TTCTTG-CATCGTGTTTTAAATTAAAC--GCCTTTTCTAAGC------TA-AAtccccact
gi|5 : a-CACCATGTTTTAAATTAAATG--CCTTTTCTAATCT-----CA-AATA-AT-A----ATTTTTTTTAACCA---GAAAACATTTCCCCACAGA-GAACTA--AAAAA-TTATACCTTTAAACTTTACTTCTT-----TTTACTAC-ACATA-ATAG-TTTTGCAGA-A---ACACAAA-------A--CAACTTACACCTTTCATATCA-TGTAAC----CG--A--CCGACTTCTGTAGGC------CGG---TAAT
gi|6 : TGA-CCCAAATATCAAAAGAACAGCCTTCAA--CTATTTGTTTCATCTAAGAATTAGAA----GTAATC--ATGTTTTAGACAATAATG--ATACATAA---TTTAT--ACATT---CA-TTATCT--AAACCATT-AAAAATGAATCCTCAAGTAATGGTGTGCAATATCTGTTCTAT-TA-CAT-CA--TGTCTTT------GTTCCGCAGTTCAGACT-T
gi|7 : TGTTTTGAACCCTCAACGTATGCATAAACACTCA-----ACATTTAAACATATATATGAAT-TACTCAAA--ACATACATGAAAAGTTACTTTTTTCTTGTGGTATAAGGCGATAGT-------------TTA----GTACCAGACACTC--G--AGAGATCGACTTTCTCTGTAAATCTCCG-------GCGGAGACAGCCGAGTGTCT
gi|8 : AATGAACGGCCG-CAAACCCAATTGTTTCATC-AAAT----GACATTTGTAAAC--A--------------AT--CATATTTAACATTCTACTAACATTTTACA-ATATTTCAAAACC-TTTGAAA-TGAATTTTTAAG----G--GTACAA-A-CTTGTCTGCGTAGAATAAA--TGCCTTT-TGTTAGTTCCGCA
gi|9 : TAACGAACCATAACAAAGTTACAGTTTTA-TCTTT-CTTTATATTTTTCTAC-A--ACATATAGGG-GTTCGCATATA---ACAC-TT-------AATCCACTTATAGTTTTCA-ATCA-T-TAAC----CGTCA--CCG-TTTCTGCA-GC------CGG---TAATAATACGG-----CTACAAATTCTGCTTT
Alignments
lowQualScore : 22222222222 11 11 11 1111 1111111 11111 1111 1111 33333333333 11 1111 3333333 6666666666666666666666 444444444444444 2222222 222222 2 11 111 2222 22222222222 33333 11111111 22222 2222 1 11 11111 4444444444444 1 1 2222222222222222 4444444444444 111 22222
lowQualScore : 3 6 5 8 66666666666 11 0 1 0 11 5 44 5 8 00 7777 6666666 6 6 1 11111 99 4 8 55 4444 0 7777 66 3 55555555555 99 11 0 4444 2222222 8888888888888888888888 4 444444444444444 1111111 000000 6 44 0 333 7 7 7 7 3 6 6 3333 66666666666 8 44444 00000000 6 99 6 1 3 55 55555 4444 0 00 88888 2222222222222 0 7 3 0 7 4444444444444444 0000000000000 777 77777
lowQualScore : . . . . ........... .. . . . .. . .. . . .. .... ....... . . . ..... .. . . .. .... . .... .. . ........... .. .. . .... ....... ...................... . ............... ....... ...... . .. . ... . . . . . . . .... ........... . ..... ........ . .. . . . .. ..... .... . .. ..... ............. . . . . . ................ ............. ... .....
lowQualScore : 2 7 7 0 22222222222 00 8 4 6 00 0 88 0 0 66 8888 0000000 7 7 0 00000 88 0 0 66 8888 8 0000 44 2 88888888888 88 00 2 8888 5555555 2222222222222222222222 2 777777777777777 7777777 000000 7 00 7 777 3 3 3 3 2 7 3 7777 88888888888 8 88888 66666666 7 22 7 0 2 88 00000 8888 0 22 55555 2222222222222 0 0 2 0 0 2222222222222222 5555555555555 555 00000
consensus : AAACACATTGA-CGCAAGCGTCAAAAGAACGGCCG-CAAACCCACTTGTTTCATC-AAGA----GAAATTTGTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACTAACATTGTACA-ATATTTCAAAACCATTTGAAATGAATTTTTAAG----G--GTACAA-A-CTTTTCTGCGTAGAATANA--TGCCTTT-TGTTAATTCCGCAACTT-CGACTTT---TGTTTACCAAGATTCGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCAACACTTA----------TGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT-------------TNA----GCACCAGACACTC--G--G----TCGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGAT-GCAATGAGAATATCGCTGCATTATACGATTGGCTGTTTTTATTTCTTG-CATCGTGTTTTAAATTAAACG-GCCTTTTCTAANCT-----TA-AATANAT-A-C-TATTTTTTTTAAAAATGGGAAAGCATTTCCCCACTAA-GAACCA--ACAAA-TTACACTTTTAATCTTTACTTTAT-----TCTAC-A--ACATA-ATAG-GTTCGCAGA-A---ACAC-AT-------A--CC-ACTTATAGTTTTCATATCA-TATAAC----CGNCA--CCG-TTTCTGCA-GC------CGG---TAATAATACGGACAAACTACAAATTCTGCTCT
Reference ( family-26 ) : AAACACATTGA-CGCAAGCGTCAAAAGAACGGCCG-CAAACCCACTTGTTTCATC-AAGA----GAAATTTGTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACTAACATTGTACA-ATATTTCAAAACCATTTGAAATGAATTTTTAAG----G--GTACAA-A-CTTTTCTGCGTAGAATANA--TGCCTTT-TGTTAATTCCGCAACTT-CGACTTT---TGTTTACCAAGATTCGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCAACACTTA----------TGAAT-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT-------------TNA----GCACCAGACACTC--G--G----TCGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGAT-GCAATGAGAATATCGCTGCATTATACGATTGGCTGTTTTTATTTCTTG-CATCGTGTTTTAAATTAAACG-GCCTTTTCTAANCT-----TA-AATANAT-A-C-TATTTTTTTTAAAAATGGGAAAGCATTTCCCCACTAA-GAACCA--ACAAA-TTACACTTTTAATCTTTACTTTAT-----TCTAC-A--ACATA-ATAG-GTTCGCAGA-A---ACAC-AT-------A--CC-ACTTATAGTTTTCATATCA-TATAAC----CGNCA--CCG-TTTCTGCA-GC------CGG---TAATAATACGGACAAACTACAAATTCTGCTCT
gi|1 : AAACACATTGA-CGCAAGCGTCAAAAGAACAGCCG-CAAACCCACTTGTTTCATC-AAGA----GAAATTTGTAAAC--ATGTTTCATGCAATAAT--CATCTTTAACATTCTACTTACATTGTACA-ATATTT--------------------TTTTAAG----G--GTACAA-A-CTTTTCTCCGTAAAATGCA--TGCCTTT-TGTTAATTCCGCAACTT-CGACTTTAATTGTTTACCAAGATTAGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACAATCAACGTATGCATTTACACTCAATAC--A----------TGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT-------------TAA----GCACCAGACACCCGAG--G----TCGACTGTCTCCGCAAATCTCCG-------ACGGAGACAGTCGAGTGTCTCGGGCGAAGTGCTCGCATCGAT-GCAATGAGAATATTGCTGCATTATACGA-TGGCTGTTTTTATTTCTTGCCATC-TGTTTTAAATTAAACGTGCCTTTTCTAAACT-----TA-AATAAATAA-CATATTTTTTTTAAAAAT-GGAAAGCATTTCCCCATTAA-GAACCA--ATAAA-TTACACTTTTAATCTTTACTTTAT-----TTTTC-AAGACATA-ATAG-GTTCGCAGA-A---ACAC-ATACATGTAA--CC-ACTTATAGTTTTCATATCA-TATAACGATATGGCAGTCTT-TTTCT-CA-GCAGAACATGGGTCTTATCATATGGACAAATTACAAATTCTGTTCT
gi|10 : TTCTTG-CATCGTGTTTTAAATTAAACG--CTTTTTCTAAAGT-----AA-AATACGT---C-TAATTTTTT---AAATGGGAAAGCACTTCTCCACTAT-AAACCA--ACAAA-TTACACTTTTAATCTTTt
gi|11 : TTTAAG----A--GTACAA-A-CATTTCTGTGTAGAATAA--------------TAATTCCGCATCCT-CGACTTT----GTTTACCAAGATTCGA--TCCC----CCCCCCTCCCCCAA-TAATAATAATGTTTTGAACCCT
gi|12 : tgTT---TGTTTACCAAGATTCGAAATGCAACCTCCCCCTCCCCCCA--TAATAATAATGTTTTGAACCCTCGACGTATGCATTTACTCTCAACACTTA---------------------GAA--ATATACATGA
gi|13 : cTTG-CATCATGTTTTAAATTAAACG--CCTTT---AAT-----------ATATAT-A---TATTTTTTTTAA---TGGCAAAGCATTTCTACTCTAA-GAACCA--ACAAA-TTACACTTTTAA
gi|14 : GT-------------TCA------ACCAGACACTC--G--G----T----TGTCTACGCAAATCTCCGGAGATTTACGGAGATAGCCGAGCGTCT
gi|15 : tcgtgcaaccAAACACATTGA-CGCAAGTGTCCAAAGAACGGCCG-C-AACCTAC--GTTTCAgagact
gi|16 : acaagGT-------------TAA------ACCAGACACTC--G--------TGG-TGACTCCGCAAATCTTCG-------ACG
gi|17 : tTTGAACGAAAGCGTCAACAGAACGGCCG-CAAACCCACTgagatta
gi|2 : AACACATTGA-CGCAAGCGTCAAAAGAACGGCCG-CAAACCCACTTGTTT-------------------TGTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACCAACATTGCACA-ATATTTCAAAACC-TTTGAAATGAATTTTTAAG----G--GTACAA-A-CTTTTCTGCGTAGAATATAAAGGCCTTT-TGTTAATTCCGCGACTTACAA--TT---TGTTTACCAAGATTCAAAATACA----CCCTCCCCCC---AATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCAACACTTA----------TAAATATACCTGAACTACATACATGAAAAGTTGCATTTTACTT-T--TAT-------TGGTATCACGTGATAATTCA----GCACCAGACAC--------------------------------CCG-------A---GGTCGGCCGAGTGTCTCTAGC------CTCGCATCGATTGCAATGA-AATAACGCTGCATTA--CGATTGGCTGTTTT-ATT-CTTG-CGTCATGTTTTAAATCAAA-A-GCCTTTTCTAGCCTAGATCTATAATAAAT-ATC-TATTTTTTTTTTAAATGGGAAAGCCTTTCCCCGCTAA-GAACCA--ACAAA-TCG-----TTACTATCTA-TTTAT-----TCTAC-A--ATATA-ATAGAATTCGCAGA-ACTTACAC-AT-------A--CCTACTTATAG-TTTCATATCATTATAAC----CGACG--CC---TTC-G-----------CGG---TAATAA
gi|3 : AAC-CATTGA-CGCAAGCGTCAAAAGAACGG--G-CAAACCCACTTGTTTCATC-AAGA-----AAATTTGTAAATCAATATTTTATGCAGTAATATCATATTTACAATTCCACTAACATTGTATATATATTTCAAAACCATT-GAAATGAATTTTTAAG----G--GTAC-A-A-CTTTTCTGCGTAGAATAAA--TGCCTTTGTGTTAATTC-------------------TGTTTACCAAGATTCGAAATGCA-------CCCCCTCCCAAATAATGATAATGTTTTGAACCCTCAACGTATGCATTTGCATT
gi|4 : acaagagA----------TGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGTATCACGCAA----TGATTTTGCACCAGACACCC--GATG----TCGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGATAGCAATGAG-ATATTGCTGCAT--TACGATTGGCTG-TTTTA-TTCTTG-CATCGTGTTTTAAATTAAAC--GCCTTTTCTAAGC------TA-AAtccccact
gi|5 : aacacttagaaagatac-CACCATGTTTTAAATTAAATG--CCTTTTCTAATCT-----CA-AATA-AT-A----ATTTTTTTTAACCA---GAAAACATTTCCCCACAGA-GAACTA--AAAAA-TTATACCTTTAAACTTTACTTCTT-----TTTACTAC-ACATA-ATAG-TTTTGCAGA-A---ACACAAA-------A--CA-ACTTACACCTTTCATATCA-TGTAAC----CG--A--CCGACTTCTGTAGGC------CGG---TAAT
gi|6 : TGA-CCCAAATATCAAAAGAACAGCCTTCAA--CTATTTGTTTCATCTAAGAATTAGAA----GTAATC--ATGTTTTAGACAATAAT--GATACATAA---TTTAT--ACATT---CA-TTATCT--AAACCATTAAAAATGAATCCTCAAGTAATGGTGTGCAATATCTGTTCTAT-TA-CAT-CA--TGTCTTT------GTTCCGCAGTTC-AGACTT
gi|7 : TGTTTTGAACCCTCAACGTATGCATAAACACTCAACATTTAAACATATATATGAAT-TACTCAAA--ACATACATGAAAAGTTACTTTTTTCTTGTGGTATAAGGCGATAGT-------------TTA----GTACCAGACACTC--G--AGAGATCGACTTTCTCTGTAAATCTCCG-------GCGGAGACAGCCGAGTGTCT
gi|8 : AATGAACGGCCG-CAAACCCAATTGTTTCATC-AAAT----GACATTTGTAAAC--A--------------AT--CATATTTAACATTCTACTAACATTTTACA-ATATTTCAAAACC-TTTGAAATGAATTTTTAAG----G--GTACAA-A-CTTGTCTGCGTAGAATAAA--TGCCTTT-TGTTAGTTCCGCA
gi|9 : TAACGAACCATAACAAAGTTACAGTTTTA-TCTTT-CTTTATATTTTTCTAC-A--ACATATAGGG-GTTCGCATATA---ACAC-TT-------AATCC-ACTTATAGTTTTCA-ATCA-T-TAAC----CGTCA--CCG-TTTCTGCA-GC------CGG---TAATAATACGG-----CTACAAATTCTGCTTT
Alignments
lowQualScore : 22222222222 11 11 11 1111 1111111 11111 1111 1111 33333333333 11 1111 3333333 6666666666666666666666 444444444444444 2222222 222222 2 11 111 2222 22222222222 33333 11111111 22222 2222 1 11 11111 4444444444444 1 1 2222222222222222 4444444444444 111 22222
lowQualScore : 3 6 5 8 66666666666 11 0 1 0 11 5 44 5 8 00 7777 6666666 6 6 1 11111 99 4 8 55 4444 0 7777 66 3 55555555555 99 11 0 4444 2222222 8888888888888888888888 4 444444444444444 1111111 000000 6 44 0 333 7 7 7 7 3 6 6 3333 66666666666 8 44444 00000000 6 99 6 1 3 55 55555 4444 0 00 88888 2222222222222 0 7 3 0 7 4444444444444444 0000000000000 777 77777
lowQualScore : . . . . ........... .. . . . .. . .. . . .. .... ....... . . . ..... .. . . .. .... . .... .. . ........... .. .. . .... ....... ...................... . ............... ....... ...... . .. . ... . . . . . . . .... ........... . ..... ........ . .. . . . .. ..... .... . .. ..... ............. . . . . . ................ ............. ... .....
lowQualScore : 2 7 7 0 22222222222 00 8 4 6 00 0 88 0 0 66 8888 0000000 7 7 0 00000 88 0 0 66 8888 8 0000 44 2 88888888888 44 00 2 8888 5555555 2222222222222222222222 2 777777777777777 7777777 000000 7 00 7 777 3 3 3 3 2 7 3 7777 88888888888 8 88888 66666666 7 22 7 0 2 88 00000 8888 0 22 55555 2222222222222 0 0 2 0 0 2222222222222222 5555555555555 555 00000
consensus : AAACACATTGA-CGCAAGCGTCAAAAGAACGGCCG-CAAACCCACTTGTTTCATC-AAGA----GAAATTTGTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACTAACATTGTACA-ATATTTCAAAACCATTTGAAATGAATTTTTAAG----G--GTACAA-A-CTTTTCTGCGTAGAATANA--TGCCTTT-TGTTAATTCCGCAACTT-CGACTTT---TGTTTACCAAGATTCGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCAACACTTA----------TGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT-------------TNA----GCACCAGACACTC--G--G----TCGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGAT-GCAATGAGAATATCGCTGCATTATACGATTGGCTGTTTTTATTTCTTG-CATCGTGTTTTAAATTAAACG-GCCTTTTCTAANCT-----TA-AATANAT-A-C-TATTTTTTTTAAAAATGGGAAAGCATTTCCCCACTAA-GAACCA--ACAAA-TTACACTTTTAATCTTTACTTTAT-----TCTAC-A--ACATA-ATAG-GTTCGCAGA-A---ACAC-AT-------A--CC-ACTTATAGTTTTCATATCA-TATAAC----CGNCA--CCG-TTTCTGCA-GC------CGG---TAATAATACGGACAAACTACAAATTCTGCTCT
Reference ( family-26 ) : AAACACATTGA-CGCAAGCGTCAAAAGAACGGCCG-CAAACCCACTTGTTTCATC-AAGA----GAAATTTGTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACTAACATTGTACA-ATATTTCAAAACCATTTGAAATGAATTTTTAAG----G--GTACAA-A-CTTTTCTGCGTAGAATANA--TGCCTTT-TGTTAATTCCGCAACTT-CGACTTT---TGTTTACCAAGATTCGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCAACACTTA----------TGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT-------------TNA----GCACCAGACACTC--G--G----TCGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGAT-GCAATGAGAATATCGCTGCATTATACGATTGGCTGTTTTTATTTCTTG-CATCGTGTTTTAAATTAAACG-GCCTTTTCTAANCT-----TA-AATANAT-A-C-TATTTTTTTTAAAAATGGGAAAGCATTTCCCCACTAA-GAACCA--ACAAA-TTACACTTTTAATCTTTACTTTAT-----TCTAC-A--ACATA-ATAG-GTTCGCAGA-A---ACAC-AT-------A--CC-ACTTATAGTTTTCATATCA-TATAAC----CGNCA--CCG-TTTCTGCA-GC------CGG---TAATAATACGGACAAACTACAAATTCTGCTCT
gi|1 : AAACACATTGA-CGCAAGCGTCAAAAGAACAGCCG-CAAACCCACTTGTTTCATC-AAGA----GAAATTTGTAAAC--ATGTTTCATGCAATAAT--CATCTTTAACATTCTACTTACATTGTACA-ATATTT--------------------TTTTAAG----G--GTACAA-A-CTTTTCTCCGTAAAATGCA--TGCCTTT-TGTTAATTCCGCAACTT-CGACTTTAATTGTTTACCAAGATTAGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACAATCAACGTATGCATTTACACTCAATAC--A----------TGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT-------------TAA----GCACCAGACACCCGAG--G----TCGACTGTCTCCGCAAATCTCCG-------ACGGAGACAGTCGAGTGTCTCGGGCGAAGTGCTCGCATCGAT-GCAATGAGAATATTGCTGCATTATACGA-TGGCTGTTTTTATTTCTTGCCATC-TGTTTTAAATTAAACGTGCCTTTTCTAAACT-----TA-AATAAATAA-CATATTTTTTTTAAAAAT-GGAAAGCATTTCCCCATTAA-GAACCA--ATAAA-TTACACTTTTAATCTTTACTTTAT-----TTTTC-AAGACATA-ATAG-GTTCGCAGA-A---ACAC-ATACATGTAA--CC-ACTTATAGTTTTCATATCA-TATAACGATATGGCAGTCTT-TTTCT-CA-GCAGAACATGGGTCTTATCATATGGACAAATTACAAATTCTGTTCT
gi|10 : TTCTTG-CATCGTGTTTTAAATTAAACG--CTTTTTCTAAAGT-----AA-AATACGT---C-TAATTTTTT---AAATGGGAAAGCACTTCTCCACTAT-AAACCA--ACAAA-TTACACTTTTAATCTTTt
gi|11 : TTTAAG----A--GTACAA-A-CATTTCTGTGTAGAATAA--------------TAATTCCGCATCCT-CGACTTT----GTTTACCAAGATTCGA--TCCC----CCCCCCTCCCCCAA-TAATAATAATGTTTTGAACCCT
gi|12 : tgTT---TGTTTACCAAGATTCGAAATGCAACCTCCCCCTCCCCCCA--TAATAATAATGTTTTGAACCCTCGACGTATGCATTTACTCTCAACACTTA---------------------GAA--ATATACATGA
gi|13 : cTTG-CATCATGTTTTAAATTAAACG--CCTTT---AAT-----------ATATAT-A---TATTTTTTTTAA---TGGCAAAGCATTTCTACTCTAA-GAACCA--ACAAA-TTACACTTTTAA
gi|14 : GT-------------TCA------ACCAGACACTC--G--G----T----TGTCTACGCAAATCTCCGGAGATTTACGGAGATAGCCGAGCGTCT
gi|15 : tcgtgcaaccAAACACATTGA-CGCAAGTGTCCAAAGAACGGCCG-C-AACCTAC--GTTTCAgagact
gi|16 : acaagGT-------------TAA------ACCAGACACTC--G--------TGG-TGACTCCGCAAATCTTCG-------ACG
gi|17 : tTTGAACGAAAGCGTCAACAGAACGGCCG-CAAACCCACTgagatta
gi|2 : AACACATTGA-CGCAAGCGTCAAAAGAACGGCCG-CAAACCCACTTGTTT-------------------TGTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACCAACATTGCACA-ATATTTCAAAACC-TTTGAAATGAATTTTTAAG----G--GTACAA-A-CTTTTCTGCGTAGAATATAAAGGCCTTT-TGTTAATTCCGCGACTTACAA--TT---TGTTTACCAAGATTCAAAATACA----CCCTCCCCCC---AATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCAACACTTA----------TAAATATACCTGAACTACATACATGAAAAGTTGCATTTTACTT-T--TAT-------TGGTATCACGTGATAATTCA----GCACCAGACAC--------------------------------CCG-------A---GGTCGGCCGAGTGTCTCTAGC------CTCGCATCGATTGCAATGA-AATAACGCTGCATTA--CGATTGGCTGTTTT-ATT-CTTG-CGTCATGTTTTAAATCAAA-A-GCCTTTTCTAGCCTAGATCTATAATAAAT-ATC-TATTTTTTTTTTAAATGGGAAAGCCTTTCCCCGCTAA-GAACCA--ACAAA-TCG-----TTACTATCTA-TTTAT-----TCTAC-A--ATATA-ATAGAATTCGCAGA-ACTTACAC-AT-------A--CCTACTTATAG-TTTCATATCATTATAAC----CGACG--CC---TTC-G-----------CGG---TAATAA
gi|3 : AAC-CATTGA-CGCAAGCGTCAAAAGAACGG--G-CAAACCCACTTGTTTCATC-AAGA-----AAATTTGTAAATCAATATTTTATGCAGTAATATCATATTTACAATTCCACTAACATTGTATATATATTTCAAAACCATT-GAAATGAATTTTTAAG----G--GTAC-A-A-CTTTTCTGCGTAGAATAAA--TGCCTTTGTGTTAATTC-------------------TGTTTACCAAGATTCGAAATGCA-------CCCCCTCCCAAATAATGATAATGTTTTGAACCCTCAACGTATGCATTTGCATT
gi|4 : acaagagA----------TGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGTATCACGCAA----TGATTTTGCACCAGACACCC--GATG----TCGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGATAGCAATGAG-ATATTGCTGCAT--TACGATTGGCTG-TTTTA-TTCTTG-CATCGTGTTTTAAATTAAAC--GCCTTTTCTAAGC------TA-AAtccccact
gi|5 : aacacttagaaagatac-CACCATGTTTTAAATTAAATG--CCTTTTCTAATCT-----CA-AATA-AT-A----ATTTTTTTTAACCA---GAAAACATTTCCCCACAGA-GAACTA--AAAAA-TTATACCTTTAAACTTTACTTCTT-----TTTACTAC-ACATA-ATAG-TTTTGCAGA-A---ACACAAA-------A--CA-ACTTACACCTTTCATATCA-TGTAAC----CG--A--CCGACTTCTGTAGGC------CGG---TAAT
gi|6 : TGA-CCCAAATATCAAAAGAACAGCCTTCAA--CTATTTGTTTCATCTAAGAATTAGAA----GTAATC--ATGTTTTAGACAATAAT--GATACATAA---TTTAT--ACATT---CA-TTATCT--AAACCATTAAAAATGAATCCTCAAGTAATGGTGTGCAATATCTGTTCTAT-TA-CAT-CA--TGTCTTT------GTTCCGCAGTTC-AGACTT
gi|7 : TGTTTTGAACCCTCAACGTATGCATAAACACTCAACATTTAAACATATATATGAAT-TACTCAAA--ACATACATGAAAAGTTACTTTTTTCTTGTGGTATAAGGCGATAGT-------------TTA----GTACCAGACACTC--G--AGAGATCGACTTTCTCTGTAAATCTCCG-------GCGGAGACAGCCGAGTGTCT
gi|8 : AATGAACGGCCG-CAAACCCAATTGTTTCATC-AAAT----GACATTTGTAAAC--A--------------AT--CATATTTAACATTCTACTAACATTTTACA-ATATTTCAAAACC-TTTGAAATGAATTTTTAAG----G--GTACAA-A-CTTGTCTGCGTAGAATAAA--TGCCTTT-TGTTAGTTCCGCA
gi|9 : TAACGAACCATAACAAAGTTACAGTTTTA-TCTTT-CTTTATATTTTTCTAC-A--ACATATAGGG-GTTCGCATATA---ACAC-TT-------AATCC-ACTTATAGTTTTCA-ATCA-T-TAAC----CGTCA--CCG-TTTCTGCA-GC------CGG---TAATAATACGG-----CTACAAATTCTGCTTT
blockSeqs : A A T T AATTAGAA CA C AT C CA G T CA ATTA TAATGGT T T G ATAAA GT T A CT T ACCT AA T AACATATATAT TA CT GTGG AAGGCGA ATCACGTGATAATTCAGC T GAGAGATCGAC GAGATTT GAAGC T A TA T T T T T . G CG CCTAGATCTAT C ATC TTTAAATG C TA G C A AC ATTTT TAC T AA ACTT TTAAT T C T T A CGTCACCGT TGTAGGC . .
blockSeqs : A . . . TGACATT . T . A TA G . CA TTT A . . G AAA T A . CT T . AA T T C . T . ATCACGCAATGATTTTGC T GATGTCGGC . . A G T T . . . T . A CG AGTAA T C TAACCA . . . C A A . A . T TA AAAA . T T . G CGACCGAC TGCAGC .
blockSeqs : . . . . AAAATT . T . C TA T . CA ATT G . . G AAA T G . . T . A T T T . T . TTAGT C GTGG . . . A AG TCTCA A A AAATG . . . T C C . A . G A ATA . . . . . CGACGCC G .
blockSeqs : . . . . . . . . . . . . TTT G . . G AA . . . . . . . . . . TCA T GGT . . G CG GCTA . A TAATG . . . C A
blockSeqs : . . G . . . CA . TAA . . . . A TG T . . . . .
blockSeqs : .
blockSeqCons : GAA******** CA TTT* T* ** T*** TGATTAGC************** GGCGG********** CG** A**** TAACG***
originalCons : AAACACATTGA-CGCAAGCGTCAAAAGAACGGCCG-CAAACCCACTTGTTTCATC-AAGA----GAAATTTGTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACTAACATTGTACA-ATATTTCAAAACCATTTGAAATGAATTTTTAAG----G--GTACAA-A-CTTTTCTGCGTAGAATANA--TGCCTTT-TGTTAATTCCGCAACTT-CGACTTT---TGTTTACCAAGATTCGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCAACACTTA----------TGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGT-------------TNA----GCACCAGACACTC--G--G----TCGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGAT-GCAATGAGAATATCGCTGCATTATACGATTGGCTGTTTTTATTTCTTG-CATCGTGTTTTAAATTAAACG-GCCTTTTCTAANCT-----TA-AATANAT-A-C-TATTTTTTTTAAAAATGGGAAAGCATTTCCCCACTAA-GAACCA--ACAAA-TTACACTTTTAATCTTTACTTTAT-----TCTAC-A--ACATA-ATAG-GTTCGCAGA-A---ACAC-AT-------A--CC-ACTTATAGTTTTCATATCA-TATAAC----CGNCA--CCG-TTTCTGCA-GC------CGG---TAATAATACGGACAAACTACAAATTCTGCTCT
finalCons : AAACACATTGA-CGCAAGCGTCAAAAGAACGGCCG-CAAACCCACTTGTTTCATC-AAGGAA--------TGTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACTAACATTGTACA-ATATTTCAAAACCTTT-GAAATGAATTTTTAAG----G--GTACAA-A-CTTTTCTGCGTAGAATANA--TGCCTTTT-GTTAATTCCGCAACTT-CGA--TTT---GTTTACCAAGATTCGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCAACACTTA----------TGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TAT-------TGGTTGATTAGC--------------ACCAGACACTCGGCGG----------TGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGAT-GCAATGAGAATATCGCTGCATTATACGATTGGCTGTTTTTATTTCTTG-CATCGTGTTTTAAATTAAACG--CCTTTTCTAANCT-----TA-AATANATA----TATTTTTTTTAACG---GGAAAGCATTTCCCCACTAA-GAACCA--ACAAA-TTACACTTTTAATCTTTACTTTAT-----TCTAC-A--ACATA-ATAG-GTTCGCAGA-A---ACAC-AT-------A--CC-ACTTATAGTTTTCATATCA-TATAAC----CGNCA--CCG-TTTCTGCA-GC------CGG---TAATAATACGGACAAACTACAAATTCTGCTCT
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 55555555555555 11 11 11 11 11111 22222 1111 44444444444 11 1111 00000000000000000000 7777777777 2222222 1 1 111 11 33 2 2 22222222222 2222 111 1111 22222 111111 1 11 11111 1 444444444444 1 2222222222222222 333333333333 111 22222
lowQualScore : 3 6 5 1 44444444444444 0 11 3 5 11 5 44 5 8 00 99 1 0 11 222 8 3 0 11111 00000 0 7777 66 77777777777 0 99 11 0 4444 88888888888888888888 0000000000 2 1111111 2 3 777 44 0 00 7 3 3 6 6 99 66666666666 8 5555 444 3333 6 99 6 1 3 55 55555 555555 0 00 88888 0 222222222222 7 3 0 7 4444444444444444 666666666666 777 77777
lowQualScore : . . . . .............. . .. . . .. . .. . . .. .. . . .. ... . . . ..... ..... . .... .. ........... . .. .. . .... .................... .......... . ....... . . ... .. . .. . . . . . .. ........... . .... ... .... . .. . . . .. ..... ...... . .. ..... . ............ . . . . ................ ............ ... .....
lowQualScore : 2 7 7 0 88888888888888 8 00 2 6 00 0 88 0 0 66 00 0 8 00 444 0 5 8 55555 00000 8 0000 44 00000000000 8 44 00 2 8888 55555555555555555555 5555555555 5 7777777 3 3 777 00 7 77 3 7 7 7 3 22 88888888888 8 8888 000 8888 7 22 7 0 2 88 00000 888888 0 22 55555 0 555555555555 0 2 0 0 2222222222222222 888888888888 555 00000
consensus : AAACACATTGA-CGCAAGCGTCAAAAGAACGGCC-GCAAACCCACTTGTTTCATCAAG-GAAATTT-----GTAAAC--ATGTTTTATGCAATAAT--CATATTTAACATTCTACTAACATTGTACA-ATATTTCAAAACC-TTTGAAATGAATTTTTAAGGGTACAAACTTTTCTGCGTAGA--ATAAATGCCTTT-TGTTAATTCCGCAACTT-CGA-TTT-----GTTTACCAAGATTCGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCAACACT----------TATGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TATTGGTATCACG---TGATAGTTTA-GCACCAGACACCCGA-G---CGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGGGCGAAGC-CTCGCATCGA-T-GCAATGAGAATATCGCTGCAT--TACGATTGGCTG-TTTTA-TTCTTGC-ATCGTGTTTTAAATTAAACG--CCTTTTCTAANCT-----TA-AATANATA-C-TATTTTTTTT---AACG--GGAAAGCATTTCCCCACTAA-GAACCA--ACAAA-TTACACTTTTAATCTTTACTTTAT-----TCTAC-A-A--CATA-ATAG-GTTCGCAGA-A---ACAC-ATA--C-------C-ACTTATAGTTTTCATATCA-TATAAC----CGNCA--CCG-TTTCT--GCA-G--C-CGG---TAATAATACGGACAAACTACAAATTCTGCTCT
Reference ( family-26 ) : AAACACATTGA-CGCAAGCGTCAAAAGAACGGCC-GCAAACCCACTTGTTTCATCAAG-GAA---T-----GTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACTAACATTGTACA-ATATTTCAAAACC-TTTGAAATGAATTTTTAAGGGTACAAACTTTTCTGCGTAGA--ATANATGCCTTT-TGTTAATTCCGCAACTT-CGA-TTT-----GTTTACCAAGATTCGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCAACACT----------TATGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TATTGGT---------TGA----TTA-GCACCAGACACTCGG-----CGG-TGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGA-T-GCAATGAGAATATCGCTGCATTATACGATTGGCTGTTTTTATTTCTTGC-ATCGTGTTTTAAATTAAACG--CCTTTTCTAANCT-----TA-AATANATA---TATTTTTTTT---AACG--GGAAAGCATTTCCCCACTAA-GAACCA--ACAAA-TTACACTTTTAATCTTTACTTTAT-----TCTAC-A-A--CATA-ATAG-GTTCGCAGA-A---ACAC-ATA--C-------C-ACTTATAGTTTTCATATCA-TATAAC----CGNCA--CCG-TTTCT--GCA-G--C-CGG---TAATAATACGGACAAACTACAAATTCTGCTCT
gi|1 : AAACACATTGA-CGCAAGCGTCAAAAGAACAGCC-GCAAACCCACTTGTTTCATCAAGAGAAATTT-----GTAAAC--ATGTTTCATGCAATAAT--CATCTTTAACATTCTACTTACATTGTACA-ATATTT--------------------TTTTAAGGGTACAAACTTTTCTCCGTAAA--ATGCATGCCTTT-TGTTAATTCCGCAACTT-CGA-CTTTAATTGTTTACCAAGATTAGAAATGCA----CCCCCCCCCCCCAAATAATAATAATGTTTTGAACAATCAACGTATGCATTTACACTCAATAC------------ATGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TATTGGT---------TAA--------GCACCAGACACCCGAGGT--CGACTGTCTCCGCAAATCTCCG-------ACGGAGACAGTCGAGTGTCTCGGGCGAAGTGCTCGCATCGA-T-GCAATGAGAATATTGCTGCATTATACGAT-GGCTGTTTTTATTTCTTGCCATC-TGTTTTAAATTAAACGTGCCTTTTCTAAACT-----TA-AATAAATAACATATTTTTTTT---AAAAATGGAAAGCATTTCCCCATTAA-GAACCA--ATAAA-TTACACTTTTAATCTTTACTTTAT-----TTTTC-A-AGACATA-ATAG-GTTCGCAGA-A---ACAC-ATA--CATGTAACC-ACTTATAGTTTTCATATCA-TATAACGATATGGCAGTCTT-TTTCTCAGCA-GAACATGGGTCTTATCATATGGACAAATTACAAATTCTGTTCT
gi|10 : TTCTTGC-ATCGTGTTTTAAATTAAACG--CTTTTTCTAAAGT-----AA-AATACGTC---TAATTTTTTA---AATG--GGAAAGCACTTCTCCACTAT-AAACCA--ACAAA-TTACACTTTTAATCTTTt
gi|11 : TTTAAGAGTACAAACATTTCTGTGTAGA--ATAA------------TAATTCCGCATCCT-CGACTTT-----GTTTACCAAGATTCGA--TCCC----CCCCCCTCCCCCAA-TAATAATAATGTTTTGAACCCT
gi|12 : tg-TTT-----GTTTACCAAGATTCGAAATGCAACCTCCCCCTCCCCCCA--TAATAATAATGTTTTGAACCCTCGACGTATGCATTTACTCTCAACACT----------TA-----------GAA--ATATACATGA
gi|13 : cTTGC-ATCATGTTTTAAATTAAACG--CCTTT---AAT-----------ATATATA---TATTTTTTTT---AATG--GCAAAGCATTTCTACTCTAA-GAACCA--ACAAA-TTACACTTTTAA
gi|14 : ACCAGACACTCGG-----T---TGTCTACGCAAATCTCCGGAGATTTACGGAGATAGCCGAGCGTCT
gi|15 : tcgtgcaaccAAACACATTGA-CGCAAGTGTCCAAAGAACGGCC-GC-AACCTAC--GTTTCAtgaacgagact
gi|16 : acaagACCAGACACTCG------TGG-TGACTCCGCAAATCTTCG-------ACG
gi|17 : tTTGAACGAAAGCGTCAACAGAACGGCC-GCAAACCCACTttaacgagatta
gi|2 : AACACATTGA-CGCAAGCGTCAAAAGAACGGCC-GCAAACCCACTTGTTT--------------T-----GTAAAC--ATGTTTCATGCAATAAT--CATATTTAACATTCTACCAACATTGCACA-ATATTTCAAAACC-TTTGAAATGAATTTTTAAGGGTACAAACTTTTCTGCGTAGAATATAAAGGCCTTT-TGTTAATTCCGCGACTTACAA-TTT-----GTTTACCAAGATTCAAAATACA----CCCTCCCCCC---AATAATAATAATGTTTTGAACCCTCAACGTATGCATTTACACTCAACACT----------TATAAATATACCTGAACTACATACATGAAAAGTTGCATTTTACTT-T--TATTGGTATCACG---TGATAATTCA-GCACCAGACACCCGA------GG-T-------------------------------CGGCCGAGTGTCTCT-----AGC-CTCGCATCGATT-GCAATGA-AATAACGCTGCAT--TACGATTGGCTG-TTTTA-TTCTTGC-GTCATGTTTTAAATCAAAAG--CCTTTTCTAGCCTAGATCTATAATAAATATC-TATTTTTTTTTTAAATG--GGAAAGCCTTTCCCCGCTAA-GAACCA--ACAAA-TCG-----TTACTATCTA-TTTAT-----TCTAC-A-A--TATA-ATAGAATTCGCAGA-ACTTACAC-ATA--C-------CTACTTATAG-TTTCATATCATTATAAC----CGACG--CC---TTC---G--------CGG---TAATAA
gi|3 : AAC-CATTGA-CGCAAGCGTCAAAAGAACGG---GCAAACCCACTTGTTTCATCAAG-AAAATTT-----GTAAATCAATATTTTATGCAGTAATATCATATTTACAATTCCACTAACATTGTATATATATTTCAAAACC-ATTGAAATGAATTTTTAAGGGTAC-AACTTTTCTGCGTAGA--ATAAATGCCTTTGTGTTAATTC---------------T-----GTTTACCAAGATTCGAAATGCA-------CCCCCTCCCAAATAATGATAATGTTTTGAACCCTCAACGTATGCATTTGCATT
gi|4 : acaagagATGAAC-TACTCGAA--ACATACATGAAAAGTTGCGTTTTACTT-T--TATTGGTATCACGCAATGA----TTTTGCACCAGACACCCGATGT--CGGCTGTCTCCGCAAATCTCCG-------ACGGAGACAGCCGAGTGTCTCGAGCGAAGC-CTCGCATCGA-TAGCAATGAG-ATATTGCTGCAT--TACGATTGGCTG-TTTTA-TTCTTGC-ATCGTGTTTTAAATTAAACG--CCTTTTCTAAGC------TA-AAtccccact
gi|5 : aacacttagaaagatacC-ACCATGTTTTAAATTAAATG--CCTTTTCTAATCT-----CA-AATA-ATA----ATTTTTTTT---AACC--AGAAAACATTTCCCCACAGA-GAACTA--AAAAA-TTATACCTTTAAACTTTACTTCTT-----TTTACTACA--CATA-ATAG-TTTTGCAGA-A---ACACAAAA--C-------A-ACTTACACCTTTCATATCA-TGTAAC----CG--A--CCGACTTCT--GTAGG--C-CGG---TAAT
gi|6 : TGA-CCCAAATATCAAAAGAACAGCCTTCAA--CTATTTGTTTCATCTAA-GAA---TTAGAAGTAATC--ATGTTTTAGACAATAAT--GATACATAA---TTTAT--ACATT---CA-TTATCT--AAACCATTAAAAATGAATCCTCAAG
gi|7 : TGTTTTGAACCCTCAACGTATGCATAAACACTCAACATTTAAACATATATATGAAT-TACTCAAA--ACATACATGAAAAGTTACTTTTTTCTTGTGGTATAAGG---------CGATAGTTTA-GTACCAGACACTCGAGAGATCGACTTTCTCTGTAAATCTCCG-------GCGGAGACAGCCGAGTGTCTtaatggtgtgcaatatctgttctattacatcatgtctttgttccgcagttcagactt
gi|8 : AATGAACGGCC-GCAAACCCAATTGTTTCATCAA----A---T-----G---AC--AT-TTGTA---AACAAT--CATATTTAACATTCTACTAACATTTTACA-ATATTTCAAAACC-TTTGAAATGAATTTTTAAGGGTACAAACTTGTCTGCGTAGA--ATAAATGCCTTT-TGTTAGTTCCGCA
gi|9 : TAACGAACCATAACAAAGTTACAGTTTTA-TCTTT-CTTTATATTTTTCTAC-A-A--CATATAGGG-GTTCGCATATA---ACAC-TTAATC-------C-ACTTATAGTTTTCA-ATCA-T-TAAC----CGTCA--CCG-TTTCT--GCA-G--C-CGG---TAATAATACGG-----CTACAAATTCTGCTTT