lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 555555555555555 1 6666666666666666666 1 2222 111 11 11111111 3 1111 111 1 5555555555555 2222222 33333333333 1111111111 2222222 22222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1 222222 11 11 555555555555555555 33333 1 2222 1 44444444 1 1 1 1 55555 1 2222 4444 111 1 6666666666666666666666666666666666666666666666666666666666666666666666666 1 1 33 2 1111 1 1 1 1 222 1 11 1 33 22 1 1 3333 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 33 1 22 1 1
lowQualScore : 77 5 5 5 1 999999999999999 999 6 5 66 0 5 5 5 4444444444444444444 0 5 9 8888 3 3 88 55 55 3 222 55 66 44 88888888 3 3 2222 99 55 55 0 4 333 1 1 0 7777777777777 1111111 66 66666666666 6666666666 66 5 8888888 0 33333 4 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 8 999 8 6 333333 8 11 9 33 999999999999999999 7 7 22222 3 4444 6 3 77777777 3 3 6 3 3 7 99999 7 3 6 1111 7 2222 6 555 3 3333333333333333333333333333333333333333333333333333333333333333333333333 7 7 3 6 11 3 7 6666 3 3 3 3 333 3 88 3 4 66 00 3 3 0000 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 55 2 11 3 7 5 7
lowQualScore : .. . . . . ............... ... . . .. . . . . ................... . . . .... . . .. .. .. . ... .. .. .. ........ . . .... .. .. .. . . ... . . . ............. ....... .. ........... .......... .. . ....... . ..... . .......................................................................................... . ... . . ...... . .. . .. .................. . . ..... . .... . . ........ . . . . . . ..... . . . .... . .... . ... . ......................................................................... . . . . .. . . .... . . . . ... . .. . . .. .. . . .... ................................................................................................................................................................................................... . .. . .. . . . .
lowQualScore : 99 7 7 7 4 000000000000000 333 0 0 99 1 0 7 0 9999999999999999999 1 0 9 6666 6 6 44 77 00 6 777 33 55 11 22222222 6 5 7777 44 55 55 7 0 999 9 9 4 9999999999999 4444444 99 44444444444 4444444444 99 1 9999999 7 00000 4 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 444 0 0 000000 0 00 8 22 777777777777777777 3 3 00000 3 7777 7 3 00000000 3 3 7 3 3 3 33333 3 3 7 7777 3 3333 7 333 3 7777777777777777777777777777777777777777777777777777777777777777777777777 3 3 3 0 77 7 3 0000 3 3 3 3 333 3 33 3 0 77 77 3 3 7777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 33 3 00 3 3 0 3
consensus : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA---AGTAAC-AAGATTT--TCCTAA-A--ATCT-ATTTTT-TCAT-GGAAAACGAAGGNG-CTCGCTTTG-TTTGAAAAATGAC-AAA-TT-T-TTACATA-NG--TT-AGT---GA-ATT-CGT-TT--------CCA-TGG-AAACCA-ACCC-CTG--AA--CCTA-GC---AATGTTGAAAATGCA--C--CC----AACGC-CA----AAA--TT----------TAGCAG--T-TNGGG-ATC--CAAAGATATGTACA----ACAAACAAA---TTGGGTA----------ATATAT----------T-GA----ATATA-TT-----TA-ATGGC------CATCATAC-AA--GTT-AGT-AT---A--T-GTGCAGA-CATT-AT-GA------T-GTG--AATAT-TATTT--CATTGCA---ACTCC-AAGACAAATTACCCAAA-A-TTTAAT-CCGAA--TTTCCTC-AGTAC--TC-NT-AAAA-AT-GGTCA-TTTG-AGGATAG----TTCAAGGAA-AATGGT-C--AAAAATA-TACACTCATTATTAACAAGA-TTT--TTT-ATTTTACTA-CGAGTTC---AAAG-A---TGGTA---TNTA----------TAG-----CTG-A--ACTAACAA-AAAA-TATTG-GTATG-TTAGTG-AG-TTCGAT-AA-AA-AGA-TAT---AATC-GAC--GAA-AGNTTNATT-TGAGA-TCAT-TCAAA---ATTTCACA---TCTA---TAAACTACTACTAC---TAAC--AGAT-CATGCC-ATTTCCCACGCAAA--AAAAGACAA--A--AGTTA-AATG--TAA--GA---TATCAATACTTAAATTTTC-ATTANANGCAATTGGTATGCAAA-TA-TATTATTTGTTCCAGAAAAAATAAACNAAAAACGANCTTTTGGGGGGT--AAGCACNCTAGCCC--AATTTCCTCTGTTTTCCCGGAAAACGGTAAT-CTGAG-ATAAATT
Reference ( gi|4 ) : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAAG--AGTACA-AAGAATT--CCGTAA-A--ATCT-ATTTTT-TCAT-GGAAAATGAAGGAA-CTCGCCTTG-TTTGAAATATGA--ACA-TT-T-CTACATA-TG--TT-AGT---GA-GTT-CGG-TT--------CCA-TGGTAAACCA-ACCC-CTG--AA--CCTA-GT---AATGTGGAAAATGC---T--CC----AACGC-AA----AAA--TT----------AAGCAG--T-TTGGA-ATC--CAAAGATATGT-CA----ACAAACACA---TTGAGTA----------ATATAT----------T-GA----ATAT--TG-----TA-ATGGC------CATCATAC-AA--GTTTAGT-A----A--T-GTGCAGG-AATT-AT-GA------T-GTG--AATAT-TATTT--CATTGTA---ACTCT-AAGACAAATTACCCAAA-A-TGTAAT-CCGAA--TTTCCTC-AGTAC--TC-CTAAAAA-AT-GGTCA-TTTG-AGGATAGAGTTTTCAAGGAA-AATGGT-C--AAAAATATTATACTCATTGTTAACAAGA-TTTAATTT-ATTTCACTATTGAGTTT---AAAG-A---TGATA---TCTA----------TAG----ACTG-A--ACTAACAA-AAAAATATT--GTATGTTTAGTG-AG-TTCGAT-AA-AA-AGA-TAT---AATC-GAC--GAA-AGTTAGATT-TGAGA-TCAT-TCAAA---ATTTCACATATTCTAAATTAAACTACTACTACATGTAAC--ATATGCATGTCATTTTCCCACACAAAGGAAAAGGCAA--A--AGTTA-AATGGTTAA--GA---TACAAATACTTTGGTATTC-ATTAGAAGCAATTGATAT-CAAATTATTATTATTT-TCCCAG----ATTAAACAAAAAACAAAT---------GTAAAAGCACTCTAGCCCGGAATTTCCTCTGTTTTCCCGAAAAACATTAAT-CTGAGCATAAATT
gi|9 : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA---AGTAAC-AAGATTT--TCATAA-A--A-AT-AGTTTAATCAT-GG----CGAGGGGGTCTC-TTTTG-ATTAAAAAATGA--CAA-TT-T-TTACATA-GG--TT-AGT---GA-ATT-GGT-TT--------CCA-TGG-AAA-CG-ACCT-CTG--AA--CTGA-CC---AATGTTGAAAA------A--CCAAATAACGC-CA----AAA--TT----------TAGCAG--TGGTAGA-AT---TAAAAATATG
gi|3 : TTAAGGGGAATTACT-GAATGCTGAGATGAA---AGTAAACAAGTTTT--CC--AA-G--ATCT-ATTTTT-TCAT-GGGAAACAGAGGTC-TTGGCCTGT-TTTGAAAAATGAC-AAA-TT-TACTAT-TAGTG--TT-AGT---GA-ATT-CGTCTT--------CCAATGG-AAAC-A-ACCC-CTG--AA--CCTA-GC---AATGTG-AACATGCA--C--CC----CACGC-TA----AAACGTT----------A-GCG-----TTGGAGATC----AAGATACGT-TACATAAAAAACAAA---TTGGGTATAATCTGAATATATAT----------TTAA----ATATA-TT-----TACATGGC------CAGCATACCAA--GT--AGTCAT---A--T-GTGCAGA-CATT-ATTGA------TCGTG--AAAAT--ATTT-----TGCATACACTCTCAGGACAA-TTACCCAAACACTTTAATCCCGAAATTTTCCTCAAGTACCATC-ATAAAAACATCGGACAGTTTG-AGG-TA-------C---GAA-AATGGTCC--AAAAATG-TATACTCATGATTAAACATA-TTT--TTT-ATT--ATTA-TGAGTCCCCAAAAGCAATTTGATA---TCTAATTAAATAGCTAG----CATG-ACTACTAACAA-AAAATAATTGGGTATG-TTAGTGAAG-TTCGATCAA-AA-AGATTACTTAAATCGGAC--GAA-AACT-TATT-TGAGA-TCAT-TCAAAATTATTCCACA---TCTA----AAACTACT-TTAC---TAACAAAGAT-CATGTCTATTTCCC-CACAAA--AAAGGGCAA--A--AGTTA-AATTGTTAAACGACATTATCAATATTTAAATTTTCAATTA
gi|12 : TTAAGGGGG--TA-T-GA-TGCTGAGATGAAATCAATTC----GATTT--TCAGAATA--ATC--GTTTAA-TCAT-GGCGA--GAAGGTA--TC-TTTTG-TTTGAAAAATGA--CAA-TT-T-TTATATA-GG--TT-AGT---GA-ATT-GGT-TT--------CCA-TGG-AAA-CG-ACCT-CCG--AA--CTGA-CT---AATGTTG-AAATACCAAT--TC-----ACGC-CA----AAA--Tacaccttagcccgacatttcctctgttttccctgaaacgggtaatctgagaaaaattgatcatgataaatctgcttgcaatattcatgattaaaacagtatggcagcttgaaaaaataaaattgatataacatcagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattgaaggaacgagagaggagagaggcctcgggataatgggacggtacattgctgcgtcgaaataatacaagagctttttcttgaaatgttttatcacacccgcccccccaatgaaaaaaacaaaaaactataaaatccagtggagggtcatcattctagatccgccactcaaaatccatatttttttttaattgacacatagaactacaagatataaatattggggtatttttctgagggcaatcttgggggtggggggg
gi|15 : TTAAGGGGA--TA-T-GA-TGCTGAGATGAA---AGTAAC-ACGATTT--TCCTAA-A--ATCT-ATTTT
gi|8 : cTAAGGGGA--TA-T-GA-TGCTGAGATGAA---AGTAAC-AAGATTT--TCCTAA-A--ATCT-ATTTTT-TCAT-GGAAAA-GAGGT---CTCGC-TTG-TTTGAAAAATGAC-AAA-TT-T--TACATA-TG--TT-AGT---GA-ATT-CGT-TT--------CCA-TGG-AAA-CA-ACCC-CTG--AA--CCTA-GC---AATGTTGAAAATGCA--C--CC----AACGCTAAATTTAAA--TT----------TAGCAG--T-TGGAG-ATC--CAAAGATACACACA----ACAAACAAA---TTGGGTA----------a
gi|1 : AAGGGGA--TA-TTGA-ATCTGAG-TGAAG----TA----ACAATTTTCCCTAA-AGAATCTTATTTTT-TCAT-GGAAAA--GAGG---CT-GCCT-G-TTTGAAAAATGAT-ATAATT-T-TTACATA-TGGTTT-AAT---GA-ATT--GT-TT--------CCA-TGG--AAC-A-ACCT-CTGTAAG--ACTA-GT---A---TTGAAAGTGC-------C----AACGC-TA----AAA--TT----------TAGCAGAAT-ATGAT-GTC--CGAAGAT-TGT-AC----ACAAAAA-A---TTGA--A----------GTATAA----------T-GATGATATAT--T------TA-ATG--------CATCATAC-AATAGTT--AT-A----AACT-GTGCAGACAATT-ATAGAAGGGGTT-ACA--AATAT-TTTAT--CAT-GTA---A-TCC-AAGACAAATTACCCAAA-A-TTTAAT-CCG-----TTTCTC-AGTAC--GCTCT---AA-AT-GGT-A-TTTGAAGGACAGA-TTTTCAAGGAAGAATGGT-CGAAAAAACA-TA-ACT--TTG-TAACAAGA-TT--ATTCAATTTTACTATCG---TT---AAAGAA---TGGTAAAGTA-A----------TAG-----CT-----AC-AACAATAAAAATATTG-GTATG-TTAGTG-AC-TTCGAT-AACAACAGA-TAT---AATC-GATCAGAA-AGGTTCATTGTGCGA-TCATGTCAAA---ATTTCACA---TCTAAACTA---TACTA--------AAT--AGATCTATGCCAATTTCCCACACAAA--AAAAGACAAGCA--AGCTA-AA-G--TAA--GA---TATCAATACTTATATTTTC-ATTAAACGCAAT--GTAT-CA---TA----TATTTGTTCCAG----A--AAACAAAAAACGATC---------GT--AAGCATGCTAGCCC--AATTATCTCTGTCCCCCTG--AAACGGTTAC-CTGAG-ATATATTtaatctga
gi|2 : AAGGGA--TA-T-GA-TGCTGA--TAAA-----TACA---GATTT--TCCTAA-A-----C-ATTTTT-TCATTGG----TAGAGGT--CTTGC--TG-TTTGAAA-ATTG--ACA-AT-T-TTGC-TA-TG--T--GGT---GA-ATTTCGT-TT--------CCA-TGGAAAACC---------G--AA--CCTA-GC---A-TGTTGAAAATGC---C--C------ACGC-TA----AA---TT----------GAGCAA--T-T-GGG-ATC--CAAA-AT-TGT-AC----ATAAAAA------TGGGTA-----------TA-AT----------T-GA----ATAT--T------TA--TGAC-------ATCATAT-AA--GT--AGT-T----C--T-GTGCAGA-CATTGAT-GA------T-GTG--AA-ATATATTCTGCATT--A---ACTC---AAACAAATT-CCTAAA-A-T-TAAT-GCCAA--TTTC-TC-AGTAC--TC-T--AAAA-AT-GGTCA-TTTT-AGGATAG----TTCAAGGAA-AATG-T-C--AAAA-TA--ACTCTCATTAT-AACAAGAATTTA--TT-ATTTTACTC---AGTT-----AAG-A---TGGTA---TTTA----------TAATGCTACTGTA--ACTA-CAA-AAAA-TATG--GTATGTT-AGTG-AGATTCGAT-AA-AA-AGA-TAT---AATC-GAC--GAATAGTTTAATT--GAGAATCAT-TCAAA----TTTCAC-TATC------TGAACTACTACTACAGAT--C--ATCTA--------TTTGCCA-GCAA--TAAAAAACAA--ACAAGTTAGAATG--TAG--CA---TG--AA-GCTTTA-TATTTTATTTTAAGCAATTGATATGCAAA----TATTATTT-TTCCAGAAAAAATAAACCAAAAA-AAATTTTTGGGGGGT--AAGCACTCTAGTCC--AATTTCCTCAGTTTTCTCGAAAAACGGTAATACTG-GCATAAATTcatcacagcttgtacatgataatttgcaaatattatgattaacagttacatgttgaataaaataaattgattataaaatagaagttactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggctccgtggatatgggagggcaggtacagtccgcgctaactgtatgaagcaaatgatgaagagcctttttctttgaaatgttgttcaacacaaaatcaccctcaacaccaccccgaaaaaaatccaacaaatatcaaacaactataatcgttgggatcattcattgatccgccactctctaagaatatccagatatctttttttttttttatttacacatgaactaatattattatgttttggagtatttttctgaggcaattgggggttggggtatcatatgactgggagttagggtcatcgaaattctctgttacagtggcggtatagtaacaataatatcccgatacagcttcttttagcgttaagcactcgaagtacaaaatcaaactctaaagttatatacaacatgtgtgatgaacgctgagtctacatgataagaattttgacatcacgtggaaacccaggtatatattcaacggttagtgtaccgacagattcaaatttccgatttcccacattttttggatgatgtgtttaacgaatcttaacaacattgtcaattagcaataattgttttcaagtttttcggcgtgagatgatgaaattttctctgacattgctgctaaaaggggatc
gi|13 : tA-A--ATCT-GTTAAT--CAT-GG----TGA-GGAG-GTCTCTTTTCTTTAAAAAATGA--CAA-TT-T-TTACATA-GG--TT-AGT---GA-ATT-AGT-TT--------CCT-TGG-AAA-CG-ACCT-CCG--AA--CT---GTCC-AATGTTGAAAAAGCAAAT--------AACGC-CA----AAA--TT----------TAGtcattaaattgggtcgaataatgctctgcatcttatgacttatagtaagtgataaaaataattgatataaatagaatgtactaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgggataatgggacgtaaattgcccgcttaattgtatgaatcgaatacaagagctttttcttgagtgttttcaacacccccctaaaaataaaatacgaagaacaaaataataatccatttggggtaatcttctagatgcactcctcaaaatctactacaaatatagtaatattttggagctgagtattttctgagaaatctgggggtgggggtgattactgatgaatgggagttagggaacatacagaattctcggttactaaaggggtacgtatatatccatgtatatgctccgttacacttcttctgttcttaaagcagtcttacactcgaatcttctaagtataaaatgatcaatttgatgaacgtgatcactatgatacgtaaaattttgaacatcagcgtggatacctcagtataaattatatttcagtttagtggtacaagatcaaatttaatttacaagtaattaacgcattcctatcattttatgatttggaatgtttttacacgaatcttaacacaatgtttaatttagtaaataaatttgcatttcatattcggtgagatcggatgatttctataaatgtggaaaaggaga
gi|6 : tat-GGAAAATGA--GAGTCTTGTGCTG-TTTGAAAAATGACAAAA-TTGT-TTACATT-TG--TTTAGT---GATATT-TGG-TTTTTGTTTGCCA-T--TGGACCACACGA-TTG--AAGCCTTA-GTCGAGATGTTAAAATTGC---TAGCC----CACGCTAA----AAA--TTTGTTTTTTTTCAGCAG--T-TGGAG-ATCTTCAAAGATGTGT-TA----ACAAAAACAGATTTG-GTATTG-------AT-TGTTGCGGGTAGGT-GG----GTGT--TGAGGTTTG-A-GGCGGAGGGCATCATTA-AA--G-TGAGT-ATGGTA--TGGTGCAGA-AATT-AT-GA------T-GTG--
gi|2 : TGG--GCA-TT-T-TCA-ACA-TG--CT-AG-------GTT-CGG-TTTT------CCA-TGG-AAACGA-A
gi|12 : taagggatatgatgctgataaatacagattttcctaaacattttttcattggtagaggtcttgctgtttgaaaattgacaattttgctatgtggtgaatA-TT-T-CAACATT-AG--TC-AGTTCGGA-GGT-CGT-TT--------CCA-TGG-AAACCA-ATTCACT---AA--CCTA-cgctaaattgagcaattgggatccaaaattgtacataaaaatgggtataattgaatatttatgacatcatataagtagttctgtgcagacattgatgatgtgaaatatattctgcattaactcaaacaaattcctaaaattaatgccaatttctcagtactctaaaaatggtcattttaggatagttcaaggaaaatgtcaaaataactctcattataacaagaatttattattttactcagttaagatggtatttataatgctactgtaactacaaaaaatatggtatgttagtgagattcgataaaaagatataatcgacgaatagtttaattgagaatcattcaaatttcactatctgaactactactacagatcatctatttgccagcaataaaaaacaaacaagttagaatgtagcatgaagctttatattttattttaagcaattgatatgcaaatattatttttccagaaaaaataaaccaaaaaaaatttttggggggtaagcactctagtccaatttcctcagttttctcgaaaaacggtaatactggcataaatttcattaaattgggtcgaataatgctctgcatcttatgacttatagtaagtgataaaaataattgatataaatagaatgtactaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgggataatgggacgtaaattgcccgcttaattgtatgaatcgaatacaagagctttttcttgagtgttttcaacacccccctaaaaataaaatacgaagaacaaaataataatccatttggggtaatcttctagatgcactcctcaaaatctactacaaatatagtaatattttggagctgagtattttctgagaaatctgggggtgggggtgattactgatgaatgggagttagggaacatacagaattctcggttactaaaggggtacgtatatatccatgtatatgctccgttacacttcttctgttcttaaagcagtcttacactcgaatcttctaagtataaaatgatcaatttgatgaacgtgatcactatgatacgtaaaattttgaacatcagcgtggatacctcagtataaattatatttcagtttagtggtacaagatcaaatttaatttacaagtaattaacgcattcctatcattttatgatttggaatgtttttacacgaatcttaacacaatgtttaatttagtaaataaatttgcatttcatattcggtgagatcggatgatttctataaatgtggaaaaggaga
gi|9 : ttaagggggtatgatgctgagatgaaatcaattcgattttcagaataatcgtttaatcatggcgagaaggtatcttttgtttgaaaaatgacaatttttata-TT-T-CAACATT-GG--TC-AGTTCAGA-GGT-CGT-TT--------CCA-TGG-AAACCA-ATTCACT---AA--CCTATGT---AAaccaattcacgccaaaat
gi|14 : tttaaggggatatgatgctgagatgaaagtaacaagattttcataaaaatagtttaatcatggcgagggggtctcttttgattaaaaaatgacaatttAGCAG--T-TGAAG-ATC--CAAAGATATGTACA----CCAAACAAA---TTGAGTA----------TAAT-T----------T-GA----ATATATTT-----TA-ATGGC------CATCATAC-A----TGTAGC-AT---A--T-GTGCAGA-CATT-AT-GA------T-GTGAAAATAT-Taaccaaataacgccaaaatttagcagtggtagaattaaaaatatg
gi|16 : tt-ATC--CGAAGATATGTACA----ACAAACAAA---TTGAGTA----------
gi|3 : gAACACCTTAGCCCGACATTTCCTCTGTTTTCCCTGAAACGGGTAAT-CTGAGAA-AAATTtaa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): GTTAATTCGTGTACACACAGTAATTCCTCAATGAAATGGGCAAATTAATTTGTAGTCAATGCGGCAACACTTATATTCCAGCTGTTATTGTAATTGTAGTTGCTTGTATTGTATTATCAATAGAATACTGGCCAGACGCAGATCGTTAGTCACACGCGGCGGAACCAACTAAATGGGCTTTTTTGCTTGTCAACATTAGAGGTTTCCCACCCCCCCTCCCCCCAATCATGCCTATAACAAATGTTTGAAAAAGTGTTCACTCTAAAAATCCCGGGCGAAAATGTTATTCAATTTTCTAATTTGAATATATTTTTTTTTTTACTGACATATATCGTTGGAATATATAACAACAATTTCCGACTGAACCATGATTTATAAACGCAGTAGATCTATCGAGCATCAGTCAAGCTCTGTTTATTATACC
Unaligned ( gi|7 ): TTTTGCTTTGTCACATTTAGAAGTCCACCTCCCCCCCCCCACCACCCCCCCCCCCCCCACCATCATACGCCATATATGTTGAAAAAAGTGTTTGGTCTAAAAATCCTGGGCAAAAAATTCAATTTTATTTATCTGCATCATAATTAATCGTTGGAATATGACACACATTTTTATTGATAACTTCTGATCATTTATATCAGACTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTATACGTTTGTTTGACTATACGGTTGTATTCAACACTTTGCGACTCTC
Unaligned ( gi|10 ): GTTTAGTCTAAAAATCCCAAGCAAACAATTCAATTTACTTTATTTGCAGCATAATTATTTTTTTTTTACTTAATCGTTGGAATATGATAAAACATTTTTATTGATATTCTGATATAATAAAGACTTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTGTACAGTTCTGATCAACGCGTTGTGACCCTCGTCT
Unaligned ( gi|11 ): TTAAAATCCGGGCGAAAAAAAATAATTCAATTATTTATTTGAATATATCTTTTTTTTTGTACATATCGTGGTTGAATATATACCATCAACTCTTCCGACTGAAATCCGATATTTTATTTAACGCAGTCAGATCTACGCGGGGGCATCAGTCAAGCTCTGTTTATTAATTTATCAATCGAACATGGC
Alignments
lowQualScore : 2222222222 11 111 1111111 2 111111111111 11111 22222222222 111 22222222222222222222 555555555555555 111111 222 3333333333 111111 2222222222222 11 111 1 1111 1 3333333 1111 3333 2222 1 1 11 1111 1 1111 11 77777777777777777777777777777777777777777777777777777777777 1 11 1 111 1 1 1 1 1 1 1 111 1 11 1 1 11 1 1 2222 11111 44444 3333333333 1 1 11 2 11 11111 1 22222 1111111 11 444444444444 2 444444 77777777777 11 11 11 1 1 1
lowQualScore : 66 5 5 5 0 88 55 3 3 0 4 66 4 4 4 6 9999999999 9999 1 555 7 4 4 1 55 00 4 444 4 4444444 4 4 4 6 4 5 66 66 777 1 33 888888888888 1 11111 11111111111 4 66 5 2 66 3 555 77 2 88888888888888888888 99 333333333333333 6 1 999999 6 111 0000000000 6 6 6 6 6 999999 6 99 88 0 3333333333333 2 66 3 3 111 3 0 4444 2 0 2222222 3 2 2222 8888 1111 0 2 0 33 3 4444 2 5 4444 33 44444444444444444444444444444444444444444444444444444444444 3 3 0 33 0 555 0 0 0 0 0 0 0 777 0 33 0 1 0 33 0 0 0000 88888 88888 2 3 7777777777 0 0 22 0 777 33 88888 0 77777 8888888 99 7 22 1 1 7 0 666666666666 3 333333 1 77 99999999999 88 1 33 33 0 0 0
lowQualScore : .. . . . . .. .. . . . . .. . . . . .......... .... . ... . . . . .. .. . ... . ....... . . . . . . .. .. ... . .. ............ . ..... ........... . .. . . .. . ... .. . .................... .. ............... . . ...... . ... .......... . . . . . ...... . .. .. . ............. . .. . . ... . . .... . . ....... . . .... .... .... . . . .. . .... . . .... .. ........................................................... . . . .. . ... . . . . . . . ... . .. . . . .. . . .... ..... ..... . . .......... . . .. . ... .. ..... . ..... ....... .. . .. . . . . ............ . ...... . .. ........... .. . .. .. . . .
lowQualScore : 99 0 0 0 1 22 11 1 2 1 4 11 4 4 4 6 0000000000 8888 8 333 3 4 4 9 44 66 4 666 4 4444444 4 4 4 1 4 4 11 11 888 9 00 444444444444 7 11111 11111111111 0 99 9 0 11 6 666 66 5 88888888888888888888 22 222222222222222 7 0 222222 7 222 0000000000 7 7 7 7 7 222222 7 22 88 8 5555555555555 5 55 2 2 000 2 0 0000 5 0 5555555 2 5 8888 8888 2222 0 5 0 88 2 8888 5 5 8888 22 22222222222222222222222222222222222222222222222222222222222 2 2 0 88 0 888 0 0 0 0 0 0 0 555 0 88 0 0 8 22 0 0 8888 55555 22222 5 2 2222222222 0 0 55 0 888 88 55555 0 00000 5555555 55 8 55 0 0 3 7 000000000000 3 333333 0 33 77777777777 33 0 88 88 5 0 0
consensus : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTT-TTCAT-GGNAAA-GGAGGT--CTCGCCTTGTTTGAAAAATGAC-A-AATT-T-TTACATA-TG--TTAGTGA-ATT-C-GT-TT-------CC-A-TGG-AAA-CG-ACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTA-----AAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATATGT---ACAACAAACAAATTGGGT--------A---ATATA---TTGA--ATATA--------------TTTA-ATGGC------CATCATA-CAAG-TTAGT-A---TA---T-GTGCAGACA-TT-A-T-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-CAAGACAAATTACCCAAA-A-TTTAAT-CCGAA--TTTCCTC-AGTAC--TCNT-AAAAATGGTCATTTGA-GGACAGA-T-TTCGAG----GAA-AATGGT-C--AAAAATA-TATACTCATTGTTAACAAGATTT--T-TTA-TTTTACTATCGAGTTT---AAAG-AA--TGGTA---TCT------ATAG-----C-----TG-A--ACTAAC-AA--AAAAT-ATT-GGTATG-TTAGTG-AG-TTCGAT-AA-AA-AGA-TAT---AATC-GAC--GAA-AGTTTNATT-TGAGA-TCAT-TCAAA---ATTTCAC-A---TCTA----AAACTACTACTAC---TAAC--AGAT-C-ATG-CCA-TTTCCCACACAAA--AAAAGGCAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTANATTTTC-ATTANAAGCAATTGATAT-CAAA-TA-TA-TATTT-TTCCAGA---A-TAAACAAAAAACAAAC---------GT--AAGCACTCTAGCCC--AA--TTTCCTCTGTTTTCCCGAAAAACGGTAAT-CTGAG-ATAAATT
Reference ( family-2461 ) : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTT-TTCAT-GGAAAACGAAGGNG-CTCGCTTTGTTTGAAAAATGAC-A-AATT-T-TTACATA-NG--TTAGTGA-ATT-C-GT-TT-------CC-A-TGG-AAACCA-ACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCCA-----AAA-----------T-TTAGCAG--TTNGGGATC--CAAAGATATGT---ACAACAAACAAATTGGGT--------A---ATATA---TTGA--ATATA--------------TTTA-ATGGC------CATCATA-CAAG-TTAGT-A---TA---T-GTGCAGACA-TT-A-T-GA------T-GTG--AA-TATTATTT--CATTGCA---ACTC-CAAGACAAATTACCCAAA-A-TTTAAT-CCGAA--TTTCCTC-AGTAC--TCNT-AAAAATGGTCATTTGA-GGATAG----TTCAAG----GAA-AATGGT-C--AAAAATA-TACACTCATTATTAACAAGATTT--T-TTA-TTTTACTA-CGAGTTC---AAAG-A---TGGTA---TNT------ATAG-----C-----TG-A--ACTAAC-AA--AAAAT-ATT-GGTATG-TTAGTG-AG-TTCGAT-AA-AA-AGA-TAT---AATC-GAC--GAA-AGNTTNATT-TGAGA-TCAT-TCAAA---ATTTCAC-A---TCTA---TAAACTACTACTAC---TAAC--AGAT-C-ATG-CCA-TTTCCCACGCAAA--AAAAGACAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTAAATTTTC-ATTANANGCAATTGGTATGCAAA-TA-TATTATTTGTTCCAGAAAAAATAAACNAAAAACGANCTTTTGGGGGGT--AAGCACNCTAGCCC--AA--TTTCCTCTGTTTTCCCGGAAAACGGTAAT-CTGAG-ATAAATT
gi|1 : AAGGGGA--TA-TTGA-ATCTGAG-TGAA--GTAA-CAAT-TTTCCCTAA-AGAATCTTATTTT-TTCAT-GGAAAA----GAGG-CT-GCCT-GTTTGAAAAATGAT-ATAATT-T-TTACATA-TGGTTTAATGA-ATT---GT-TT-------CC-A-TGG-AA--CA-ACCTCTGTAAG--ACTAGT---A---TTGAAAGTGC-------CA---ACGCTA-----AAA-----------T-TTAGCAGAATATGATGTC--CGAAGAT-TGT---ACA-CAAA-AAATTGA----------A---GTATA---ATGATGATATA--------------TTTA-ATG--------CATCATA-CAA---TAGTTA---TAAACT-GTGCAGACAATT-A-TAGAAGGGGTT-ACA--AA-TATTTTAT--CAT-GTA---A-TC-CAAGACAAATTACCCAAA-A-TTTAAT-CCG-----TTTCTC-AGTACGCTCT----AAATGGT-ATTTGAAGGACAGATT-TTCAAG----GAAGAATGGT-CGAAAAAACA-TA-ACT--TTGT-AACAAGATTA--T-TCAATTTTACTATCG---TT---AAAG-AA--TGGTAAAGTA-------ATAG-----C-----T-----AC-AAC-AATAAAAAT-ATT-GGTATG-TTAGTG-AC-TTCGAT-AACAACAGA-TAT---AATC-GATCAGAA-AGGTTCATTGTGCGA-TCATGTCAAA---ATTTCAC-A---TCTA-----AACTA-TACTA-----AAT--AGAT-CTATG-CCAATTTCCCACACAAA--AAAAGACAAGCA--AGCTA-AA--G--TAA--GA---TATCAATACTTATATTTTC-ATTAAACGCAAT--GTAT------CA-TA-TATTTGTTCCAGA------AAACAAAAAACGATC---------GT--AAGCATGCTAGCCC--AA--TTATCTCTGTCCCCCTG--AAACGGTTAC-CTGAG-ATATATT
gi|12 : TTAAGGGGG--TA-T-GA-TGCTGAGATGAA-ATCAA-TTCGATTTTCAGAATA--ATC--GTTTA-ATCAT-GGCGA--GAAGGTA--TC-TTTTGTTTGAAAAATGAC-A-A-TT-T-TTATATA-GG--TTAGTGA-ATT-G-GT-TT-------CC-A-TGG-AAA-CG-ACCTCCG--AA--CTGACT---AATGTTGAAA---T-ACC---AATTCACGCCA-----AAA-----------T-catcacagcttgtacatgataatttgcaaatattatgattaacagttacatgttgaataaaataaattgattataaaatagaagttactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggctccgtggatatgggagggcaggtacagtccgcgctaactgtatgaagcaaatgatgaagagcctttttctttgaaatgttgttcaacacaaaatcaccctcaacaccaccccgaaaaaaatccaacaaatatcaaacaactataatcgttgggatcattcattgatccgccactctctaagaatatccagatatctttttttttttttatttacacatgaactaatattattatgttttggagtatttttctgaggcaattgggggttggggtatcatatgactgggagttagggtcatcgaaattctctgttacagtggcggtatagtaacaataatatcccgatacagcttcttttagcgttaagcactcgaagtacaaaatcaaactctaaagttatatacaacatgtgtgatgaacgctgagtctacatgataagaattttgacatcacgtggaaacccaggtatatattcaacggttagtgtaccgacagattcaaatttccgatttcccacattttttggatgatgtgtttaacgaatcttaacaacattgtcaattagcaataattgttttcaagtttttcggcgtgagatgatgaaattttctctgacattgctgctaaaaggggatc
gi|13 : A-A--ATCT-GTTAA-T-CAT-GGTGA--GGAGGT--CTC-TTTTCTTTAAAAAATGAC-A-A-TT-T-TTACATA-GG--TTAGTGA-ATT-A-GT-TT-------CC-T-TGG-AAA-CG-ACCTCCG--AA--CTGTCC---AATGTTGAAAAAGC-AAA---TA---ACGCCA-----AAA-----------T-TTAG
gi|14 : tat-TTAGCAG--TTGAAGATC--CAAAGATATGT---ACACCAAACAAATTGAGT------------ATAAT---TTGA--ATATAT-------------TTTA-ATGGC------CATCATA-CATG--TAGC-A---TA---T-GTGCAGACA-TT-A-T-GA------T-GTGAAAA-TATT
gi|15 : TTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CACGATTTTCCTAA-A--ATCT-ATTTT-
gi|16 : cGATC--CGAAGATATGT---ACAACAAACAAATTGAGT--------A---a
gi|2 : AAGGGA--TA-T-GA-TGCTGA--TAAA---TA--CA-GATTTTCCTAA-A-----C-ATTTT-TTCATTGGTAGA----GGT--CTTGCT--GTTTGAAAATTGAC-A-A--T-T-TTGC-TA-TG--T-GGTGA-ATTTC-GT-TT-------CC-A-TGG-AAA----ACC---G--AA--CCTAGC---A-TGTTGAAAATGC---C---CA----CGCTA-----AA------------T-TGAGCAA--TT-GGGATC--CAAA-AT-TGT---ACA-TAAA--AAT-GGGT--------A----TA-A---TTGA--ATAT----------------TTA--TGAC-------ATCATA-TAAG-T-AGT-----TC---T-GTGCAGACA-TTGA-T-GA------T-GTG--AAATAT-ATTCTGCATT--A---ACTC---AAACAAATT-CCTAAA-A-TT-AAT-GCCAA--TTTC-TC-AGTAC--TC-T-AAAAATGGTCATTTTA-GGATAG----TTCAAG----GAA-AATG-T-C--AAAA-TA--ACTCTCATTAT-AACAAGAATT--TATTA-TTTTACT--C-AGTT-----AAG-A---TGGTA---TTT------ATAATGCTAC-----TGTA--ACTA-C-AA--AAAAT-AT--GGTATG-TTAGTG-AGATTCGAT-AA-AA-AGA-TAT---AATC-GAC--GAATAGTTTAATT--GAGAATCAT-TCAAA----TTTCACTA---TCTG-----AACTACTACTAC---------AGAT-C-AT--CTA-TTTGCCA-GCAAT--AAAAAACAA--ACAAGTTAGAA-TG--TAG--CA---TG--AAGCTTTATATTTT--ATTTTAAGCAATTGATATGCAAA-TA-T--TATTT-TTCCAGAAAAAATAAACCAAAAA-AAATTTTTGGGGGGT--AAGCACTCTAGTCC--AA--TTTCCTCAGTTTTCTCGAAAAACGGTAATACTGGC-ATAAATTtaa
gi|3 : tTTAAGGGGAATTACT-GAATGCTGAGATGAA-AGTAAACAAG-TTTTCC-AA-G--ATCT-ATTTT-TTCAT-GGGAAACAGAGGTC-TTGGCCTGTTTTGAAAAATGAC-A-AATT-TACTAT-TAGTG--TTAGTGA-ATT-C-GTCTT-------CCAA-TGG-AAA-CA-ACCCCTG--AA--CCTAGC---AATG-TGAACATGC-ACC---CC---ACGCTA-----AAA-----------CGTTAGC-G--TTGGAGATC----AAGATACGTTACATAAAAAACAAATTGGGTATAATCTGA---ATATATATTTAA--ATATA--------------TTTACATGGC------CAGCATACCAAG--TAGTCA---TA---T-GTGCAGACA-TT-ATT-GA------TCGTG--AA--AATATT-----TTGCATACACTCTCAGGAC-AATTACCCAAACACTTTAATCCCGAAATTTTCCTCAAGTACCATCAT-AAAAA----CATC----GGACAG----TTTGAGGTACGAA-AATGGTCC--AAAAATG-TATACTCATGATTAAACATATTT--T-TTA---TTATTA-TGAGTCCCCAAAAGCAATTTGATA---TCTAATTAAATAG-----CTAGCATG-ACTACTAAC-AA--AAAATAATTGGGTATG-TTAGTGAAG-TTCGATCAA-AA-AGATTACTTAAATCGGAC--GAA-AACTT-ATT-TGAGA-TCAT-TCAAAATTATTCCAC-A---TCTA----AAACTACT-TTAC---TAACAAAGAT-C-ATGTCTA-TTTCCC-CACAAA--AAAGGGCAA--A--AGTTA-AATTGT-TAAACGACATTATCAATATTTAAATTTTCAATTAtcattaaattgggtcgaataatgctctgcatcttatgacttatagtaagtgataaaaataattgatataaatagaatgtactaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgggataatgggacgtaaattgcccgcttaattgtatgaatcgaatacaagagctttttcttgagtgttttcaacacccccctaaaaataaaatacgaagaacaaaataataatccatttggggtaatcttctagatgcactcctcaaaatctactacaaatatagtaatattttggagctgagtattttctgagaaatctgggggtgggggtgattactgatgaatgggagttagggaacatacagaattctcggttactaaaggggtacgtatatatccatgtatatgctccgttacacttcttctgttcttaaagcagtcttacactcgaatcttctaagtataaaatgatcaatttgatgaacgtgatcactatgatacgtaaaattttgaacatcagcgtggatacctcagtataaattatatttcagtttagtggtacaagatcaaatttaatttacaagtaattaacgcattcctatcattttatgatttggaatgtttttacacgaatcttaacacaatgtttaatttagtaaataaatttgcatttcatattcggtgagatcggatgatttctataaatgtggaaaaggaga
gi|3 : AACACCTTAGCCC--GACATTTCCTCTGTTTTCCCTGAAACGGGTAAT-CTGAG-AAAAATTacaccttagcccgacatttcctctgttttccctgaaacgggtaatctgagaaaaattgatcatgataaatctgcttgcaatattcatgattaaaacagtatggcagcttgaaaaaataaaattgatataacatcagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattgaaggaacgagagaggagagaggcctcgggataatgggacggtacattgctgcgtcgaaataatacaagagctttttcttgaaatgttttatcacacccgcccccccaatgaaaaaaacaaaaaactataaaatccagtggagggtcatcattctagatccgccactcaaaatccatatttttttttaattgacacatagaactacaagatataaatattggggtatttttctgagggcaatcttgggggtggggggg
gi|4 : ttaaggggaattactgaatgctgagatgaaagtaaacaagttttccaagatctattttttcatgggaaacagaggtcttggcctgttttgaaaaatgacaaatttactattagtgttagtgaattcgtcttccaatggaaacaacccctgaacctagcaatgtgaacatgcaccccacgctaaaacgttagcgttggagatcaagatacgttacataaaaaacaaattgggtataatctgaatatatatttaaatatatttacatggccagcataccaagtagtcatatgtgcagacattattgatcgtgaaaatattttgcatacactctcaggacaattacccaaacactttaatcccgaaattttcctcaagtaccatcataaaaacatcggacagtttgaggtacgaaaatggtccaaaaatgtatactcatgattaaacatattttttattattatgagtccccaaaagcaatttgatatctaattaaatagctagcatgactactaacaaaaaataattgggtatgttagtgaagttcgatcaaaaagattacttaaatcggacgaaaacttatttgagatcattcaaaattattccacatctaaaactactttactaacaaagatcatgtctatttccccacaaaaaagggcaaaagttaaattgttaaacgacattatcaatatttaaattttcaattTTTAAGGGGA--TA-T-GA-TGCTGAGATGAAGAGTAC-AAAGAATTCCGTAA-A--ATCT-ATTTT-TTCAT-GGAAAATGAAGGAA-CTCGCCTTGTTTGAAATATGA--A-CATT-T-CTACATA-TG--TTAGTGA-GTT-C-GG-TT-------CC-A-TGGTAAACCA-ACCCCTG--AA--CCTAGT---AATGTGGAAAATGC--TC---CA---ACGCAA-----AAA-----------T-TAAGCAG--TTTGGAATC--CAAAGATATGT----CAACAAACACATTGAGT--------A---ATATA---TTGA--ATAT---------------TGTA-ATGGC------CATCATA-CAAGTTTAGT-A----A---T-GTGCAGGAA-TT-A-T-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-TAAGACAAATTACCCAAA-A-TGTAAT-CCGAA--TTTCCTC-AGTAC--TCCTAAAAAATGGTCATTTGA-GGATAGAGTTTTCAAG----GAA-AATGGT-C--AAAAATATTATACTCATTGTTAACAAGATTTAAT-TTA-TTTCACTATTGAGTTT---AAAG-A---TGATA---TCT------ATAGA----C-----TG-A--ACTAACAAA--AAAAT-ATT--GTATGTTTAGTG-AG-TTCGAT-AA-AA-AGA-TAT---AATC-GAC--GAA-AGTTAGATT-TGAGA-TCAT-TCAAA---ATTTCAC-ATATTCTAAATTAAACTACTACTACATGTAAC--ATATGC-ATG-TCATTTTCCCACACAAAGGAAAAGGCAA--A--AGTTA-AA-TGGTTAA--GA---TACAAATACTTTGGTATTC-ATTAGAAGCAATTGATAT-CAAATTATTATTATTT-TCCCAG----ATTAAACAAAAAACAAAT---------GTAAAAGCACTCTAGCCCGGAA--TTTCCTCTGTTTTCCCGAAAAACATTAAT-CTGAGCATAAATTgatcatgataaatctgcttgcaatattcatgattaaaacagtatggcagcttgaaaaaataaaattgatataacatcagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattgaaggaacgagagaggagagaggcctcgggataatgggacggtacattgctgcgtcgaaataatacaagagctttttcttgaaatgttttatcacacccgcccccccaatgaaaaaaacaaaaaactataaaatccagtggagggtcatcattctagatccgccactcaaaatccatatttttttttaattgacacatagaactacaagatataaatattggggtatttttctgagggcaatcttgggggtggggggg
gi|6 : -GGAAAATGAGAGT--CTTGTGCTGTTTGAAAAATGACAA-AATTGT-TTACATT-TGT-TTAGTGATATT-TGGT-TTTTGTTTGCC-ATTGG---ACCACACGATTG--AAGCCTTAGTCGAGATGTTAAAATTGCTAGC---CC---ACGCTA-----AAAATTTGTTTTTTT-TCAGCAG--TTGGAGATCTTCAAAGATGTGTTA-ACAA-AAACAGATTTGGT--------ATTGAT-TG---TTGC--GGGTAGGTGGGTGTTGAGGTTTG-A-GGCGGAGGGCATCATT-AAAG-TGAGT-ATGGTA---TGGTGCAGAAA-TT-A-T-GA------T-GTG--
gi|8 : TAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTT-TTCAT-GGAAAA--GAGGT--CTCGC-TTGTTTGAAAAATGAC-A-AA-T-T-TTACATA-TG--TTAGTGA-ATT-C-GT-TT-------CC-A-TGG-AAA-CA-ACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTAAATTTAAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATACAC---ACAACAAACAAATTGGGT--------A---
gi|9 : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCATAA-A--A-AT-AGTTTAATCAT-GG----CGAGGGGGTCTC-TTTTGATTAAAAAATGAC---AATT-T-TTACATA-GG--TTAGTGA-ATT-G-GT-TT-------CC-A-TGG-AAA-CG-ACCTCTG--AA--CTGACC---AATGTTGAAAA----ACCAAATA---ACGCCA-----AAA-----------T-TTAGCAG--TGGTAGAAT--TAAAAATATGtaatctga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTAATTCGTGTACACACAGTAATTCCTCAATGAAATGGGCAAATTAATTTGTAGTCAATGCGGCAACACTTATATTCCAGCTGTTATTGTAATTGTAGTTGCTTGTATTGTATTATCAATAGAATACTGGCCAGACGCAGATCGTTAGTCACACGCGGCGGAACCAACTAAATGGGCTTTTTTGCTTGTCAACATTAGAGGTTTCCCACCCCCCCTCCCCCCAATCATGCCTATAACAAATGTTTGAAAAAGTGTTCACTCTAAAAATCCCGGGCGAAAATGTTATTCAATTTTCTAATTTGAATATATTTTTTTTTTTACTGACATATATCGTTGGAATATATAACAACAATTTCCGACTGAACCATGATTTATAAACGCAGTAGATCTATCGAGCATCAGTCAAGCTCTGTTTATTATACC
Unaligned ( gi|7 ): TTTTGCTTTGTCACATTTAGAAGTCCACCTCCCCCCCCCCACCACCCCCCCCCCCCCCACCATCATACGCCATATATGTTGAAAAAAGTGTTTGGTCTAAAAATCCTGGGCAAAAAATTCAATTTTATTTATCTGCATCATAATTAATCGTTGGAATATGACACACATTTTTATTGATAACTTCTGATCATTTATATCAGACTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTATACGTTTGTTTGACTATACGGTTGTATTCAACACTTTGCGACTCTC
Unaligned ( gi|10 ): GTTTAGTCTAAAAATCCCAAGCAAACAATTCAATTTACTTTATTTGCAGCATAATTATTTTTTTTTTACTTAATCGTTGGAATATGATAAAACATTTTTATTGATATTCTGATATAATAAAGACTTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTGTACAGTTCTGATCAACGCGTTGTGACCCTCGTCT
Unaligned ( gi|11 ): TTAAAATCCGGGCGAAAAAAAATAATTCAATTATTTATTTGAATATATCTTTTTTTTTGTACATATCGTGGTTGAATATATACCATCAACTCTTCCGACTGAAATCCGATATTTTATTTAACGCAGTCAGATCTACGCGGGGGCATCAGTCAAGCTCTGTTTATTAATTTATCAATCGAACATGGC
Alignments
lowQualScore : 1111 1111 1 11 111 1111111 111111111111 11111 22222222222 111 33333333333 555555555555555 111111 222 3333333333 1 111111 1 222222222222 11 111 222222 1 3333333 1111 3333 1 2222 1 22 11 1 1111 1 222222222222 222222 777777777777777777777777777777777 1 11 1 1 1 111 1 1 1 1 111 1 11 1 1 11 1 1 111 11111 2222 1 2222 11 1 1 222 11 11111 1 22222 1111111 11 1 4444444444 1 33333 5555555555 11 11 11 1 1
lowQualScore : 66 5 5 5 0 88 55 3 3 0 4 66 4 5 4 1 7777 4 4 6666 4 4 4 2 4 4 1 4 00 4 444 4 4444444 4 4 9999 4 5 66 66 777 1 33 888888888888 11111 11111111111 4 66 66 3 555 77 2 22222222222 3 6 99 333333333333333 6 1 999999 6 111 0000000000 6 6 6 3 999999 6 99 8 0 555555555555 2 66 3 3 111 3 000000 2 0 2222222 3 2 2222 2222 0 2 1111 0 2 33 3 33 7 2 5 4444 0 44 555555555555 111111 222222222222222222222222222222222 3 3 0 33 0 55 0 0 666 0 0 0 0 777 0 33 0 0 0 33 0 0 3 777 88888 1111 5 2 3 0000 3 33 0 0 2 111 55 33 88888 0 77777 8888888 99 1 22 1 7 3 7777777777 3 55555 6 4444444444 88 0 33 33 7 0 0
lowQualScore : .. . . . . .. .. . . . . .. . . . . .... . . .... . . . . . . . . .. . ... . ....... . . .... . . .. .. ... . .. ............ ..... ........... . .. .. . ... .. . ........... . . .. ............... . . ...... . ... .......... . . . . ...... . .. . . ............ . .. . . ... . ...... . . ....... . . .... .... . . .... . . .. . .. . . . .... . .. ............ ...... ................................. . . . .. . .. . . ... . . . . ... . .. . . . .. . . . ... ..... .... . . . .... . .. . . . ... .. .. ..... . ..... ....... .. . .. . . . .......... . ..... . .......... .. . .. .. . . .
lowQualScore : 99 0 0 0 1 22 11 1 2 1 4 11 4 0 4 0 1111 4 4 7777 4 4 4 8 4 4 9 4 66 4 666 4 4444444 4 4 4444 4 4 11 11 888 9 00 444444444444 11111 11111111111 0 99 11 6 666 66 5 33333333333 5 7 22 222222222222222 7 0 222222 7 222 0000000000 7 7 7 3 222222 7 22 0 6 222222222222 5 55 2 2 000 2 222222 5 0 5555555 2 5 8888 2222 0 0 2222 0 5 88 2 22 0 5 5 8888 0 00 000000000000 222222 000000000000000000000000000000000 2 2 0 88 0 88 0 0 222 0 0 0 0 555 0 88 0 8 8 22 0 0 2 555 55555 2222 5 5 2 0000 2 88 0 0 5 000 88 88 55555 0 00000 5555555 55 0 55 0 3 3 3333333333 3 77777 7 0000000000 33 8 88 88 0 0 0
consensus : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGNAAA-GGAG-GT-CTCGCCTTGTTT-GAAAAATGAC-A-AATT-T-TTACATA-TG--TTAGTGA-ATT-C-GT-TT-------CCA-TGG-AA----AC-GACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTA-----AAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATATGT---ACAACAAACAAATTGGGTA----------ATATATT-GA--ATATA--------------TTTA-ATGGC------CATCATAC-AAG-TTAGT-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-CAAGACAAATTACCCAAA-A-TTTAATCC-GAA--TTTCCTCA-GTAC--TCNT-AAAAATGGTCATTTGA-GGACAGA--TTT-CGAGG----AA-AATGGTC--AAAAATA-TATACTCATTGTTAACAAGATTT--T-TTA-TTTTACTATCGAGTTT---AAAG-AAT--GGTA---TCTA----------TAG-----C-TG-A--ACTAAC-AA--AAAATA-TTGG-TATG-TTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTTNATT-TGAGA-TCAT-TCAAAATT---TCAC-A---TCTA----AAACTACTACTAC---TAACA--GAT-C-ATGCC-A-TTTCCCACACAAA--AAAAGGCAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTANATTTTC-ATTANAAGCAATTGATAT-CAAAT-TA----TATTT-TTCCAGAA----TAAACAAAAAACAAAC---------GT--AAGCACTCTAGCCC--AA--TTTCCTCTGTTTTCCCGAAAAACGGTAAT-CTGAG-ATAAATT
Reference ( family-2461 ) : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGNAAA-GGAG-GT-CTCGCCTTGTTT-GAAAAATGAC-A-AATT-T-TTACATA-TG--TTAGTGA-ATT-C-GT-TT-------CCA-TGG-AA----AC-GACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTA-----AAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATATGT---ACAACAAACAAATTGGGTA----------ATATATT-GA--ATATA--------------TTTA-ATGGC------CATCATAC-AAG-TTAGT-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-CAAGACAAATTACCCAAA-A-TTTAATCC-GAA--TTTCCTCA-GTAC--TCNT-AAAAATGGTCATTTGA-GGACAGA--TTT-CGAGG----AA-AATGGTC--AAAAATA-TATACTCATTGTTAACAAGATTT--T-TTA-TTTTACTATCGAGTTT---AAAG-AAT--GGTA---TCTA----------TAG-----C-TG-A--ACTAAC-AA--AAAATA-TTGG-TATG-TTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTTNATT-TGAGA-TCAT-TCAAAATT---TCAC-A---TCTA----AAACTACTACTAC---TAACA--GAT-C-ATGCC-A-TTTCCCACACAAA--AAAAGGCAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTANATTTTC-ATTANAAGCAATTGATAT-CAAATATA----TATTT-TTCCAGAA----TAAACAAAAAACAAAC---------GT--AAGCACTCTAGCCC--AA--TTTCCTCTGTTTTCCCGAAAAACGGTAAT-CTGAG-ATAAATT
gi|1 : AAGGGGA--TA-TTGA-ATCTGAG-TGAA--GTAA-CAAT-TTTCCCTAA-AGAATCTTATTTTT-TCAT-GGAAAA-G-AG-G--CT-GCCT-GTTT-GAAAAATGAT-ATAATT-T-TTACATA-TGGTTTAATGA-ATT---GT-TT-------CCA-TGG-AA-----C-AACCTCTGTAAG--ACTAGT---A---TTGAAAGTGC-------CA---ACGCTA-----AAA-----------T-TTAGCAGAATATGATGTC--CGAAGAT-TGT---ACA-CAAA-AAATTGA--A----------GTATAAT-GATGATATA--------------TTTA-ATG--------CATCATAC-AA---TAGTTA---TAAACT-GTGCAGACAATT-ATAGAAGGGGTT-ACA--AA-TATTTTAT--CAT-GTA---A-TC-CAAGACAAATTACCCAAA-A-TTTAATCC-G-----TTTCTCA-GTACGCTCT----AAATGGT-ATTTGAAGGACAGA--TTTTCAAGG----AAGAATGGTCGAAAAAACA-TA-ACT--TTGT-AACAAGATTA--T-TCAATTTTACTATCG---TT---AAAG-AAT--GGTAAAGTA-A----------TAG-----C-T-----AC-AAC-AATAAAAATA-TTGG-TATG-TTAGTGA-C-TTCGAT-AACAACAGAT-AT---AATCG-ATCAGAA-AGGTTCATTGTGCGA-TCATGTCAAAATT---TCAC-A---TCTA----AA-CTA-TACTA-----AATA--GAT-CTATGCC-AATTTCCCACACAAA--AAAAGACAAGCA--AGCTA-AA--G--TAA--GA---TATCAATACTTATATTTTC-ATTAAACGCAAT--GTAT-CA----TA----TATTTGTTCCAGAA------AACAAAAAACGATC---------GT--AAGCATGCTAGCCC--AA--TTATCTCTGTCCCCCTG--AAACGGTTAC-CTGAG-ATATATT
gi|12 : TTAAGGGGG--TA-T-GA-TGCTGAGATGAA-ATCAA-TTCGATTTTCAGAATA--ATC--GTTTAA-TCAT-GGCGA--GAAG-GT-ATC-TTTTGTTT-GAAAAATGAC-A-A-TT-T-TTATATA-GG--TTAGTGA-ATT-G-GT-TT-------CCA-TGG-AA----AC-GACCTCCG--AA--CTGACT---AATGTTGAAA---T-ACC---AATTCACGCCA-----AAA-----------T-catcacagcttgtacatgataatttgcaaatattatgattaacagttacatgttgaataaaataaattgattataaaatagaagttactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggctccgtggatatgggagggcaggtacagtccgcgctaactgtatgaagcaaatgatgaagagcctttttctttgaaatgttgttcaacacaaaatcaccctcaacaccaccccgaaaaaaatccaacaaatatcaaacaactataatcgttgggatcattcattgatccgccactctctaagaatatccagatatctttttttttttttatttacacatgaactaatattattatgttttggagtatttttctgaggcaattgggggttggggtatcatatgactgggagttagggtcatcgaaattctctgttacagtggcggtatagtaacaataatatcccgatacagcttcttttagcgttaagcactcgaagtacaaaatcaaactctaaagttatatacaacatgtgtgatgaacgctgagtctacatgataagaattttgacatcacgtggaaacccaggtatatattcaacggttagtgtaccgacagattcaaatttccgatttcccacattttttggatgatgtgtttaacgaatcttaacaacattgtcaattagcaataattgttttcaagtttttcggcgtgagatgatgaaattttctctgacattgctgctaaaaggggatc
gi|13 : A-A--ATCT-GTTAAT--CAT-GGTGA--GGAG-GT-CTC-TTTTCTTT-AAAAAATGAC-A-A-TT-T-TTACATA-GG--TTAGTGA-ATT-A-GT-TT-------CCT-TGG-AA----AC-GACCTCCG--AA--CTGTCC---AATGTTGAAAAAGC-AAA---TA---ACGCCA-----AAA-----------T-TTAG
gi|14 : tat-TTAGCAG--TTGAAGATC--CAAAGATATGT---ACACCAAACAAATTGAGT-----------ATAATTT-GA--ATATAT-------------TTTA-ATGGC------CATCATAC-ATG--TAGC-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTGAAAA-TATT
gi|15 : TTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CACGATTTTCCTAA-A--ATCT-ATTTT
gi|16 : cGATC--CGAAGATATGT---ACAACAAACAAATTGAGTA----------a
gi|2 : AAGGGA--TA-T-GA-TGCTGA--TAAA---TA--CA-GATTTTCCTAA-A-----C-ATTTTT-TCATTGGTA----GAG-GT-CTTGC--TGTTT-GAAAATTGAC-A-A--T-T-TTGC-TA-TG--T-GGTGA-ATTTC-GT-TT-------CCA-TGG-AA----A---ACC---G--AA--CCTAGC---A-TGTTGAAAATGC---C---CA----CGCTA-----AA------------T-TGAGCAA--TTGG-GATC--CAAA-AT-TGT---ACA-TAAA--AAT-GGGTA-----------TA-ATT-GA--ATAT----------------TTA--TGAC-------ATCATAT-AAG-T-AGT-----TC---T-GTGCAGACA-TTGAT-GA------T-GTG--AAATAT-ATTCTGCATT--A---ACTC---AAACAAATT-CCTAAA-A-TT-AATGC-CAA--TTTC-TCA-GTAC--TC-T-AAAAATGGTCATTTTA-GGATAG----TT-CAAGG----AA-AATG-TC--AAAA-TA--ACTCTCATTAT-AACAAGAATT--TATTA-TTTTACT--C-AGTT-----AAG-A-T--GGTA---TTTA----------TAATGCTAC-TGTA--ACTA-C-AA--AAAATA-T-GG-TATG-TTAGTGA-GATTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAATAGTTTAATT--GAGAATCAT-TCAAA-TT---TCACTA---TCTG----AA----CTACTAC---TA-CA--GAT-C-AT-CT-A-TTTGCCA-GCAAT--AAAAAACAA--ACAAGTTAGAA-TG--TAG--CA---TG--AAGCTTTATATTTT--ATTTTAAGCAATTGATATGCAAATAT-----TATTT-TTCCAGAAAAAATAAACCAAAAA-AAATTTTTGGGGGGT--AAGCACTCTAGTCC--AA--TTTCCTCAGTTTTCTCGAAAAACGGTAATACTGGC-ATAAATTtaa
gi|3 : tTTAAGGGGAATTACT-GAATGCTGAGATGAA-AGTAAACAAG-TTTTCC-AA-G--ATCT-ATTTTT-TCAT-GGGAAACAGAG-GT-CTTGGCCTGTTTTGAAAAATGAC-A-AATT-TACTAT-TAGTG--TTAGTGA-ATT-C-GTCTT-------CCAATGG-AA----AC-AACCCCTG--AA--CCTAGC---AATGT-GAACATGC-ACC---CC---ACGCTA-----AAA-----------CGTTAGC-G--TTGGAGATC----AAGATACGTTACATAAAAAACAAATTGGGTATAATCTGAATATATATTTAA--ATATA--------------TTTACATGGC------CAGCATACCAAG-T-AGTCA---TA---T-GTGCAGACA-TT-ATTGA------TCGTG--AA-AAT-ATTT-----TGCATACACTCTCAGGACAA-TTACCCAAACACTTTAATCCCGAAATTTTCCTCAAGTACCATCAT-AAAAA----CATC----GGACAG----TT-TGAGGTACGAA-AATGGTCC-AAAAATG-TATACTCATGATTAAACATATTT--T-TTA-TT--ATTAT-GAGTCCCCAAAAGCAATTTGATA---TCTAATTAAATAGCTAG-----CATG-ACTACTAAC-AA--AAAATAATTGGGTATG-TTAGTGAAG-TTCGATCAA-AA-AGATTACTTAAATCGGAC--GAA-AACTT-ATT-TGAGA-TCAT-TCAAAATTATTCCAC-A---TCTA----AAACTACT-TTAC---TAACAAAGAT-C-ATGTCTA-TTTCCC-CACAAA--AAAGGGCAA--A--AGTTA-AATTGT-TAAACGACATTATCAATATTTAAATTTTCAATTAtcattaaattgggtcgaataatgctctgcatcttatgacttatagtaagtgataaaaataattgatataaatagaatgtactaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgggataatgggacgtaaattgcccgcttaattgtatgaatcgaatacaagagctttttcttgagtgttttcaacacccccctaaaaataaaatacgaagaacaaaataataatccatttggggtaatcttctagatgcactcctcaaaatctactacaaatatagtaatattttggagctgagtattttctgagaaatctgggggtgggggtgattactgatgaatgggagttagggaacatacagaattctcggttactaaaggggtacgtatatatccatgtatatgctccgttacacttcttctgttcttaaagcagtcttacactcgaatcttctaagtataaaatgatcaatttgatgaacgtgatcactatgatacgtaaaattttgaacatcagcgtggatacctcagtataaattatatttcagtttagtggtacaagatcaaatttaatttacaagtaattaacgcattcctatcattttatgatttggaatgtttttacacgaatcttaacacaatgtttaatttagtaaataaatttgcatttcatattcggtgagatcggatgatttctataaatgtggaaaaggaga
gi|3 : CACCTTAGCCC--GACATTTCCTCTGTTTTCCCTGAAACGGGTAAT-CTGAG-AAAAATTacaccttagcccgacatttcctctgttttccctgaaacgggtaatctgagaaaaattgatcatgataaatctgcttgcaatattcatgattaaaacagtatggcagcttgaaaaaataaaattgatataacatcagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattgaaggaacgagagaggagagaggcctcgggataatgggacggtacattgctgcgtcgaaataatacaagagctttttcttgaaatgttttatcacacccgcccccccaatgaaaaaaacaaaaaactataaaatccagtggagggtcatcattctagatccgccactcaaaatccatatttttttttaattgacacatagaactacaagatataaatattggggtatttttctgagggcaatcttgggggtggggggg
gi|4 : ttaaggggaattactgaatgctgagatgaaagtaaacaagttttccaagatctattttttcatgggaaacagaggtcttggcctgttttgaaaaatgacaaatttactattagtgttagtgaattcgtcttccaatggaaacaacccctgaacctagcaatgtgaacatgcaccccacgctaaaacgttagcgttggagatcaagatacgttacataaaaaacaaattgggtataatctgaatatatatttaaatatatttacatggccagcataccaagtagtcatatgtgcagacattattgatcgtgaaaatattttgcatacactctcaggacaattacccaaacactttaatcccgaaattttcctcaagtaccatcataaaaacatcggacagtttgaggtacgaaaatggtccaaaaatgtatactcatgattaaacatattttttattattatgagtccccaaaagcaatttgatatctaattaaatagctagcatgactactaacaaaaaataattgggtatgttagtgaagttcgatcaaaaagattacttaaatcggacgaaaacttatttgagatcattcaaaattattccacatctaaaactactttactaacaaagatcatgtctatttccccacaaaaaagggcaaaagttaaattgttaaacgacattatcaatatttaaattttcaattaaTTTAAGGGGA--TA-T-GA-TGCTGAGATGAAGAGTAC-AAAGAATTCCGTAA-A--ATCT-ATTTTT-TCAT-GGAAAATGAAG-GAACTCGCCTTGTTT-GAAATATGA--A-CATT-T-CTACATA-TG--TTAGTGA-GTT-C-GG-TT-------CCA-TGGTAA----ACCAACCCCTG--AA--CCTAGT---AATGTGGAAAATGC--TC---CA---ACGCAA-----AAA-----------T-TAAGCAG--TTTGGAATC--CAAAGATATGT----CAACAAACACATTGAGTA----------ATATATT-GA--ATAT---------------TGTA-ATGGC------CATCATAC-AAGTTTAGT-A----A---T-GTGCAGGAA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-TAAGACAAATTACCCAAA-A-TGTAATCC-GAA--TTTCCTCA-GTAC--TCCTAAAAAATGGTCATTTGA-GGATAGAGTTTT-CAAGG----AA-AATGGTC--AAAAATATTATACTCATTGTTAACAAGATTTAAT-TTA-TTTCACTATTGAGTTT---AAAG--AT--GATA---TCTA----------TAGA----C-TG-A--ACTAACAAA--AAAATA-TT-G-TATGTTTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTAGATT-TGAGA-TCAT-TCAAAATT---TCAC-ATATTCTAAATTAAACTACTACTACATGTAACA--TATGC-ATGTC-ATTTTCCCACACAAAGGAAAAGGCAA--A--AGTTA-AA-TGGTTAA--GA---TACAAATACTTTGGTATTC-ATTAGAAGCAATTGATAT-CAAAT-TATTATTATTT-TCCCAGAT----TAAACAAAAAACAAAT---------GTAAAAGCACTCTAGCCCGGAA--TTTCCTCTGTTTTCCCGAAAAACATTAAT-CTGAGCATAAATTgatcatgataaatctgcttgcaatattcatgattaaaacagtatggcagcttgaaaaaataaaattgatataacatcagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattgaaggaacgagagaggagagaggcctcgggataatgggacggtacattgctgcgtcgaaataatacaagagctttttcttgaaatgttttatcacacccgcccccccaatgaaaaaaacaaaaaactataaaatccagtggagggtcatcattctagatccgccactcaaaatccatatttttttttaattgacacatagaactacaagatataaatattggggtatttttctgagggcaatcttgggggtggggggg
gi|6 : -GGAAAA-TGAGAGT-CTTGTGCTGTTT-GAAAAATGACAA-AATTGT-TTACATT-TGT-TTAGTGATATT-TGGT-TTTTGTTTGCCA-TTG-GACCACAC-GA---TTG--AAGCCTTAGTCGAGATGTTAAAATTGCTAGC---CC---ACGCTA-----AAAATTTGTTTTTTT-TCAGCAG--TTGGAGATCTTCAAAGATGTGTTA-ACAA-AAACAGATTTGGTATTG-------AT-TGTT-GC--GGGTAGGTGGGTGTTGAGGTTTG-A-GGCGGAGGGCATCATTA-AAG-TGAGT-ATGGTA---TGGTGCAGAAA-TT-AT-GA------T-GTG--
gi|8 : TAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGAAAA-G-AG-GT-CTCGC-TTGTTT-GAAAAATGAC-A-AATT-T-T-ACATA-TG--TTAGTGA-ATT-C-GT-TT-------CCA-TGG-AA----AC-AACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTAAATTTAAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATACAC---ACAACAAACAAATTGGGTA----------
gi|9 : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCATAA-A--A-AT-AGTTTAATCAT-GGCGAG-GG-G-GT-CTC-TTTTGATT-AAAAAATGAC-A-A-TT-T-TTACATA-GG--TTAGTGA-ATT-G-GT-TT-------CCA-TGG-AA----AC-GACCTCTG--AA--CTGACC---AATGTTGAAAA----ACCAAATA---ACGCCA-----AAA-----------T-TTAGCAG--TGGTAGAAT--TAAAAATATGtaatctga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTAATTCGTGTACACACAGTAATTCCTCAATGAAATGGGCAAATTAATTTGTAGTCAATGCGGCAACACTTATATTCCAGCTGTTATTGTAATTGTAGTTGCTTGTATTGTATTATCAATAGAATACTGGCCAGACGCAGATCGTTAGTCACACGCGGCGGAACCAACTAAATGGGCTTTTTTGCTTGTCAACATTAGAGGTTTCCCACCCCCCCTCCCCCCAATCATGCCTATAACAAATGTTTGAAAAAGTGTTCACTCTAAAAATCCCGGGCGAAAATGTTATTCAATTTTCTAATTTGAATATATTTTTTTTTTTACTGACATATATCGTTGGAATATATAACAACAATTTCCGACTGAACCATGATTTATAAACGCAGTAGATCTATCGAGCATCAGTCAAGCTCTGTTTATTATACC
Unaligned ( gi|7 ): TTTTGCTTTGTCACATTTAGAAGTCCACCTCCCCCCCCCCACCACCCCCCCCCCCCCCACCATCATACGCCATATATGTTGAAAAAAGTGTTTGGTCTAAAAATCCTGGGCAAAAAATTCAATTTTATTTATCTGCATCATAATTAATCGTTGGAATATGACACACATTTTTATTGATAACTTCTGATCATTTATATCAGACTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTATACGTTTGTTTGACTATACGGTTGTATTCAACACTTTGCGACTCTC
Unaligned ( gi|10 ): GTTTAGTCTAAAAATCCCAAGCAAACAATTCAATTTACTTTATTTGCAGCATAATTATTTTTTTTTTACTTAATCGTTGGAATATGATAAAACATTTTTATTGATATTCTGATATAATAAAGACTTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTGTACAGTTCTGATCAACGCGTTGTGACCCTCGTCT
Unaligned ( gi|11 ): TTAAAATCCGGGCGAAAAAAAATAATTCAATTATTTATTTGAATATATCTTTTTTTTTGTACATATCGTGGTTGAATATATACCATCAACTCTTCCGACTGAAATCCGATATTTTATTTAACGCAGTCAGATCTACGCGGGGGCATCAGTCAAGCTCTGTTTATTAATTTATCAATCGAACATGGC
Alignments
lowQualScore : 1111 1111 1 11 111 1111111 111111111111 11111 22222222222 111 33333333333 555555555555555 111111 222 3333333333 1 111111 1 222222222222 11 111 222222 1 3333333 1111 3333 1 2222 1 22 11 1 1111 1 222222222222 222222 777777777777777777777777777777777 1 11 1 1 1 111 1 1 1 1 111 1 11 1 1 11 1 1 111 11111 2222 1 2222 11 1 1 222 11 11111 1 22222 1111111 11 1 333333333 1 33333 5555555555 11 11 11 1 1
lowQualScore : 66 5 5 5 0 88 55 3 3 0 4 66 4 5 4 1 7777 4 4 6666 4 4 4 2 4 4 1 4 00 4 444 4 4444444 4 4 9999 4 5 66 66 777 1 33 888888888888 11111 11111111111 4 66 66 3 555 77 2 22222222222 3 6 99 333333333333333 6 1 999999 6 111 0000000000 6 6 6 3 999999 6 99 8 0 555555555555 2 66 3 3 111 3 000000 2 0 2222222 3 2 2222 2222 0 2 1111 0 2 33 3 33 7 2 5 4444 0 44 555555555555 111111 222222222222222222222222222222222 3 3 0 33 0 55 0 0 666 0 0 0 0 777 0 33 0 0 0 33 0 0 3 777 88888 1111 5 2 3 0000 3 33 0 0 2 111 55 33 88888 0 77777 8888888 99 1 22 1 7 3 333333333 3 55555 6 4444444444 88 0 33 33 7 0 0
lowQualScore : .. . . . . .. .. . . . . .. . . . . .... . . .... . . . . . . . . .. . ... . ....... . . .... . . .. .. ... . .. ............ ..... ........... . .. .. . ... .. . ........... . . .. ............... . . ...... . ... .......... . . . . ...... . .. . . ............ . .. . . ... . ...... . . ....... . . .... .... . . .... . . .. . .. . . . .... . .. ............ ...... ................................. . . . .. . .. . . ... . . . . ... . .. . . . .. . . . ... ..... .... . . . .... . .. . . . ... .. .. ..... . ..... ....... .. . .. . . . ......... . ..... . .......... .. . .. .. . . .
lowQualScore : 99 0 0 0 1 22 11 1 2 1 4 11 4 0 4 0 1111 4 4 7777 4 4 4 8 4 4 9 4 66 4 666 4 4444444 4 4 4444 4 4 11 11 888 9 00 444444444444 11111 11111111111 0 99 11 6 666 66 5 33333333333 5 7 22 222222222222222 7 0 222222 7 222 0000000000 7 7 7 3 222222 7 22 0 6 222222222222 5 55 2 2 000 2 222222 5 0 5555555 2 5 8888 2222 0 0 2222 0 5 88 2 22 0 5 5 8888 0 00 000000000000 222222 000000000000000000000000000000000 2 2 0 88 0 88 0 0 222 0 0 0 0 555 0 88 0 8 8 22 0 0 2 555 55555 2222 5 5 2 0000 2 88 0 0 5 000 88 88 55555 0 00000 5555555 55 0 55 0 3 3 000000000 3 77777 7 0000000000 33 8 88 88 0 0 0
consensus : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGNAAA-GGAG-GT-CTCGCCTTGTTT-GAAAAATGAC-A-AATT-T-TTACATA-TG--TTAGTGA-ATT-C-GT-TT-------CCA-TGG-AA----AC-GACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTA-----AAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATATGT---ACAACAAACAAATTGGGTA----------ATATATT-GA--ATATA--------------TTTA-ATGGC------CATCATAC-AAG-TTAGT-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-CAAGACAAATTACCCAAA-A-TTTAATCC-GAA--TTTCCTCA-GTAC--TCNT-AAAAATGGTCATTTGA-GGACAGA--TTT-CGAGG----AA-AATGGTC--AAAAATA-TATACTCATTGTTAACAAGATTT--T-TTA-TTTTACTATCGAGTTT---AAAG-AAT--GGTA---TCTA----------TAG-----C-TG-A--ACTAAC-AA--AAAATA-TTGG-TATG-TTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTTNATT-TGAGA-TCAT-TCAAAATT---TCAC-A---TCTA----AAACTACTACTAC---TAACA--GAT-C-ATGCC-A-TTTCCCACACAAA--AAAAGGCAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTANATTTTC-ATTANAAGCAATTGATAT-CAAATTA----TATTT-TTCCAGAA----TAAACAAAAAACAAAC---------GT--AAGCACTCTAGCCC--AA--TTTCCTCTGTTTTCCCGAAAAACGGTAAT-CTGAG-ATAAATT
Reference ( family-2461 ) : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGNAAA-GGAG-GT-CTCGCCTTGTTT-GAAAAATGAC-A-AATT-T-TTACATA-TG--TTAGTGA-ATT-C-GT-TT-------CCA-TGG-AA----AC-GACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTA-----AAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATATGT---ACAACAAACAAATTGGGTA----------ATATATT-GA--ATATA--------------TTTA-ATGGC------CATCATAC-AAG-TTAGT-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-CAAGACAAATTACCCAAA-A-TTTAATCC-GAA--TTTCCTCA-GTAC--TCNT-AAAAATGGTCATTTGA-GGACAGA--TTT-CGAGG----AA-AATGGTC--AAAAATA-TATACTCATTGTTAACAAGATTT--T-TTA-TTTTACTATCGAGTTT---AAAG-AAT--GGTA---TCTA----------TAG-----C-TG-A--ACTAAC-AA--AAAATA-TTGG-TATG-TTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTTNATT-TGAGA-TCAT-TCAAAATT---TCAC-A---TCTA----AAACTACTACTAC---TAACA--GAT-C-ATGCC-A-TTTCCCACACAAA--AAAAGGCAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTANATTTTC-ATTANAAGCAATTGATAT-CAAATTA----TATTT-TTCCAGAA----TAAACAAAAAACAAAC---------GT--AAGCACTCTAGCCC--AA--TTTCCTCTGTTTTCCCGAAAAACGGTAAT-CTGAG-ATAAATT
gi|1 : AAGGGGA--TA-TTGA-ATCTGAG-TGAA--GTAA-CAAT-TTTCCCTAA-AGAATCTTATTTTT-TCAT-GGAAAA-G-AG-G--CT-GCCT-GTTT-GAAAAATGAT-ATAATT-T-TTACATA-TGGTTTAATGA-ATT---GT-TT-------CCA-TGG-AA-----C-AACCTCTGTAAG--ACTAGT---A---TTGAAAGTGC-------CA---ACGCTA-----AAA-----------T-TTAGCAGAATATGATGTC--CGAAGAT-TGT---ACA-CAAA-AAATTGA--A----------GTATAAT-GATGATATA--------------TTTA-ATG--------CATCATAC-AA---TAGTTA---TAAACT-GTGCAGACAATT-ATAGAAGGGGTT-ACA--AA-TATTTTAT--CAT-GTA---A-TC-CAAGACAAATTACCCAAA-A-TTTAATCC-G-----TTTCTCA-GTACGCTCT----AAATGGT-ATTTGAAGGACAGA--TTTTCAAGG----AAGAATGGTCGAAAAAACA-TA-ACT--TTGT-AACAAGATTA--T-TCAATTTTACTATCG---TT---AAAG-AAT--GGTAAAGTA-A----------TAG-----C-T-----AC-AAC-AATAAAAATA-TTGG-TATG-TTAGTGA-C-TTCGAT-AACAACAGAT-AT---AATCG-ATCAGAA-AGGTTCATTGTGCGA-TCATGTCAAAATT---TCAC-A---TCTA----AA-CTA-TACTA-----AATA--GAT-CTATGCC-AATTTCCCACACAAA--AAAAGACAAGCA--AGCTA-AA--G--TAA--GA---TATCAATACTTATATTTTC-ATTAAACGCAAT--GTAT-CA---TA----TATTTGTTCCAGAA------AACAAAAAACGATC---------GT--AAGCATGCTAGCCC--AA--TTATCTCTGTCCCCCTG--AAACGGTTAC-CTGAG-ATATATT
gi|12 : TTAAGGGGG--TA-T-GA-TGCTGAGATGAA-ATCAA-TTCGATTTTCAGAATA--ATC--GTTTAA-TCAT-GGCGA--GAAG-GT-ATC-TTTTGTTT-GAAAAATGAC-A-A-TT-T-TTATATA-GG--TTAGTGA-ATT-G-GT-TT-------CCA-TGG-AA----AC-GACCTCCG--AA--CTGACT---AATGTTGAAA---T-ACC---AATTCACGCCA-----AAA-----------T-catcacagcttgtacatgataatttgcaaatattatgattaacagttacatgttgaataaaataaattgattataaaatagaagttactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggctccgtggatatgggagggcaggtacagtccgcgctaactgtatgaagcaaatgatgaagagcctttttctttgaaatgttgttcaacacaaaatcaccctcaacaccaccccgaaaaaaatccaacaaatatcaaacaactataatcgttgggatcattcattgatccgccactctctaagaatatccagatatctttttttttttttatttacacatgaactaatattattatgttttggagtatttttctgaggcaattgggggttggggtatcatatgactgggagttagggtcatcgaaattctctgttacagtggcggtatagtaacaataatatcccgatacagcttcttttagcgttaagcactcgaagtacaaaatcaaactctaaagttatatacaacatgtgtgatgaacgctgagtctacatgataagaattttgacatcacgtggaaacccaggtatatattcaacggttagtgtaccgacagattcaaatttccgatttcccacattttttggatgatgtgtttaacgaatcttaacaacattgtcaattagcaataattgttttcaagtttttcggcgtgagatgatgaaattttctctgacattgctgctaaaaggggatc
gi|13 : A-A--ATCT-GTTAAT--CAT-GGTGA--GGAG-GT-CTC-TTTTCTTT-AAAAAATGAC-A-A-TT-T-TTACATA-GG--TTAGTGA-ATT-A-GT-TT-------CCT-TGG-AA----AC-GACCTCCG--AA--CTGTCC---AATGTTGAAAAAGC-AAA---TA---ACGCCA-----AAA-----------T-TTAG
gi|14 : tat-TTAGCAG--TTGAAGATC--CAAAGATATGT---ACACCAAACAAATTGAGT-----------ATAATTT-GA--ATATAT-------------TTTA-ATGGC------CATCATAC-ATG--TAGC-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTGAAAA-TATT
gi|15 : TTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CACGATTTTCCTAA-A--ATCT-ATTTT
gi|16 : cGATC--CGAAGATATGT---ACAACAAACAAATTGAGTA----------a
gi|2 : AAGGGA--TA-T-GA-TGCTGA--TAAA---TA--CA-GATTTTCCTAA-A-----C-ATTTTT-TCATTGGTA----GAG-GT-CTTGC--TGTTT-GAAAATTGAC-A-A--T-T-TTGC-TA-TG--T-GGTGA-ATTTC-GT-TT-------CCA-TGG-AA----A---ACC---G--AA--CCTAGC---A-TGTTGAAAATGC---C---CA----CGCTA-----AA------------T-TGAGCAA--TTGG-GATC--CAAA-AT-TGT---ACA-TAAA--AAT-GGGTA-----------TA-ATT-GA--ATAT----------------TTA--TGAC-------ATCATAT-AAG-T-AGT-----TC---T-GTGCAGACA-TTGAT-GA------T-GTG--AAATAT-ATTCTGCATT--A---ACTC---AAACAAATT-CCTAAA-A-TT-AATGC-CAA--TTTC-TCA-GTAC--TC-T-AAAAATGGTCATTTTA-GGATAG----TT-CAAGG----AA-AATG-TC--AAAA-TA--ACTCTCATTAT-AACAAGAATT--TATTA-TTTTACT--C-AGTT-----AAG-A-T--GGTA---TTTA----------TAATGCTAC-TGTA--ACTA-C-AA--AAAATA-T-GG-TATG-TTAGTGA-GATTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAATAGTTTAATT--GAGAATCAT-TCAAA-TT---TCACTA---TCTG----AA----CTACTAC---TA-CA--GAT-C-AT-CT-A-TTTGCCA-GCAAT--AAAAAACAA--ACAAGTTAGAA-TG--TAG--CA---TG--AAGCTTTATATTTT--ATTTTAAGCAATTGATATGCAAATAT----TATTT-TTCCAGAAAAAATAAACCAAAAA-AAATTTTTGGGGGGT--AAGCACTCTAGTCC--AA--TTTCCTCAGTTTTCTCGAAAAACGGTAATACTGGC-ATAAATTtaa
gi|3 : tTTAAGGGGAATTACT-GAATGCTGAGATGAA-AGTAAACAAG-TTTTCC-AA-G--ATCT-ATTTTT-TCAT-GGGAAACAGAG-GT-CTTGGCCTGTTTTGAAAAATGAC-A-AATT-TACTAT-TAGTG--TTAGTGA-ATT-C-GTCTT-------CCAATGG-AA----AC-AACCCCTG--AA--CCTAGC---AATGT-GAACATGC-ACC---CC---ACGCTA-----AAA-----------CGTTAGC-G--TTGGAGATC----AAGATACGTTACATAAAAAACAAATTGGGTATAATCTGAATATATATTTAA--ATATA--------------TTTACATGGC------CAGCATACCAAG-T-AGTCA---TA---T-GTGCAGACA-TT-ATTGA------TCGTG--AA-AAT-ATTT-----TGCATACACTCTCAGGACAA-TTACCCAAACACTTTAATCCCGAAATTTTCCTCAAGTACCATCAT-AAAAA----CATC----GGACAG----TT-TGAGGTACGAA-AATGGTCC-AAAAATG-TATACTCATGATTAAACATATTT--T-TTA-TT--ATTAT-GAGTCCCCAAAAGCAATTTGATA---TCTAATTAAATAGCTAG-----CATG-ACTACTAAC-AA--AAAATAATTGGGTATG-TTAGTGAAG-TTCGATCAA-AA-AGATTACTTAAATCGGAC--GAA-AACTT-ATT-TGAGA-TCAT-TCAAAATTATTCCAC-A---TCTA----AAACTACT-TTAC---TAACAAAGAT-C-ATGTCTA-TTTCCC-CACAAA--AAAGGGCAA--A--AGTTA-AATTGT-TAAACGACATTATCAATATTTAAATTTTCAATTAtcattaaattgggtcgaataatgctctgcatcttatgacttatagtaagtgataaaaataattgatataaatagaatgtactaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgggataatgggacgtaaattgcccgcttaattgtatgaatcgaatacaagagctttttcttgagtgttttcaacacccccctaaaaataaaatacgaagaacaaaataataatccatttggggtaatcttctagatgcactcctcaaaatctactacaaatatagtaatattttggagctgagtattttctgagaaatctgggggtgggggtgattactgatgaatgggagttagggaacatacagaattctcggttactaaaggggtacgtatatatccatgtatatgctccgttacacttcttctgttcttaaagcagtcttacactcgaatcttctaagtataaaatgatcaatttgatgaacgtgatcactatgatacgtaaaattttgaacatcagcgtggatacctcagtataaattatatttcagtttagtggtacaagatcaaatttaatttacaagtaattaacgcattcctatcattttatgatttggaatgtttttacacgaatcttaacacaatgtttaatttagtaaataaatttgcatttcatattcggtgagatcggatgatttctataaatgtggaaaaggaga
gi|3 : AACACCTTAGCCC--GACATTTCCTCTGTTTTCCCTGAAACGGGTAAT-CTGAG-AAAAATTacaccttagcccgacatttcctctgttttccctgaaacgggtaatctgagaaaaattgatcatgataaatctgcttgcaatattcatgattaaaacagtatggcagcttgaaaaaataaaattgatataacatcagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattgaaggaacgagagaggagagaggcctcgggataatgggacggtacattgctgcgtcgaaataatacaagagctttttcttgaaatgttttatcacacccgcccccccaatgaaaaaaacaaaaaactataaaatccagtggagggtcatcattctagatccgccactcaaaatccatatttttttttaattgacacatagaactacaagatataaatattggggtatttttctgagggcaatcttgggggtggggggg
gi|4 : ttaaggggaattactgaatgctgagatgaaagtaaacaagttttccaagatctattttttcatgggaaacagaggtcttggcctgttttgaaaaatgacaaatttactattagtgttagtgaattcgtcttccaatggaaacaacccctgaacctagcaatgtgaacatgcaccccacgctaaaacgttagcgttggagatcaagatacgttacataaaaaacaaattgggtataatctgaatatatatttaaatatatttacatggccagcataccaagtagtcatatgtgcagacattattgatcgtgaaaatattttgcatacactctcaggacaattacccaaacactttaatcccgaaattttcctcaagtaccatcataaaaacatcggacagtttgaggtacgaaaatggtccaaaaatgtatactcatgattaaacatattttttattattatgagtccccaaaagcaatttgatatctaattaaatagctagcatgactactaacaaaaaataattgggtatgttagtgaagttcgatcaaaaagattacttaaatcggacgaaaacttatttgagatcattcaaaattattccacatctaaaactactttactaacaaagatcatgtctatttccccacaaaaaagggcaaaagttaaattgttaaacgacattatcaatatttaaattttcaattTTTAAGGGGA--TA-T-GA-TGCTGAGATGAAGAGTAC-AAAGAATTCCGTAA-A--ATCT-ATTTTT-TCAT-GGAAAATGAAG-GAACTCGCCTTGTTT-GAAATATGA--A-CATT-T-CTACATA-TG--TTAGTGA-GTT-C-GG-TT-------CCA-TGGTAA----ACCAACCCCTG--AA--CCTAGT---AATGTGGAAAATGC--TC---CA---ACGCAA-----AAA-----------T-TAAGCAG--TTTGGAATC--CAAAGATATGT----CAACAAACACATTGAGTA----------ATATATT-GA--ATAT---------------TGTA-ATGGC------CATCATAC-AAGTTTAGT-A----A---T-GTGCAGGAA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-TAAGACAAATTACCCAAA-A-TGTAATCC-GAA--TTTCCTCA-GTAC--TCCTAAAAAATGGTCATTTGA-GGATAGAGTTTT-CAAGG----AA-AATGGTC--AAAAATATTATACTCATTGTTAACAAGATTTAAT-TTA-TTTCACTATTGAGTTT---AAAG--AT--GATA---TCTA----------TAGA----C-TG-A--ACTAACAAA--AAAATA-TT-G-TATGTTTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTAGATT-TGAGA-TCAT-TCAAAATT---TCAC-ATATTCTAAATTAAACTACTACTACATGTAACA--TATGC-ATGTC-ATTTTCCCACACAAAGGAAAAGGCAA--A--AGTTA-AA-TGGTTAA--GA---TACAAATACTTTGGTATTC-ATTAGAAGCAATTGATAT-CAAATTATTATTATTT-TCCCAGAT----TAAACAAAAAACAAAT---------GTAAAAGCACTCTAGCCCGGAA--TTTCCTCTGTTTTCCCGAAAAACATTAAT-CTGAGCATAAATTgatcatgataaatctgcttgcaatattcatgattaaaacagtatggcagcttgaaaaaataaaattgatataacatcagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattgaaggaacgagagaggagagaggcctcgggataatgggacggtacattgctgcgtcgaaataatacaagagctttttcttgaaatgttttatcacacccgcccccccaatgaaaaaaacaaaaaactataaaatccagtggagggtcatcattctagatccgccactcaaaatccatatttttttttaattgacacatagaactacaagatataaatattggggtatttttctgagggcaatcttgggggtggggggg
gi|6 : -GGAAAA-TGAGAGT-CTTGTGCTGTTT-GAAAAATGACAA-AATTGT-TTACATT-TGT-TTAGTGATATT-TGGT-TTTTGTTTGCCA-TTG-GACCACAC-GA---TTG--AAGCCTTAGTCGAGATGTTAAAATTGCTAGC---CC---ACGCTA-----AAAATTTGTTTTTTT-TCAGCAG--TTGGAGATCTTCAAAGATGTGTTA-ACAA-AAACAGATTTGGTATTG-------AT-TGTT-GC--GGGTAGGTGGGTGTTGAGGTTTG-A-GGCGGAGGGCATCATTA-AAG-TGAGT-ATGGTA---TGGTGCAGAAA-TT-AT-GA------T-GTG--
gi|8 : TAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGAAAA-G-AG-GT-CTCGC-TTGTTT-GAAAAATGAC-A-AATT-T-T-ACATA-TG--TTAGTGA-ATT-C-GT-TT-------CCA-TGG-AA----AC-AACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTAAATTTAAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATACAC---ACAACAAACAAATTGGGTA----------
gi|9 : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCATAA-A--A-AT-AGTTTAATCAT-GGCGAG-GG-G-GT-CTC-TTTTGATT-AAAAAATGAC-A-A-TT-T-TTACATA-GG--TTAGTGA-ATT-G-GT-TT-------CCA-TGG-AA----AC-GACCTCTG--AA--CTGACC---AATGTTGAAAA----ACCAAATA---ACGCCA-----AAA-----------T-TTAGCAG--TGGTAGAAT--TAAAAATATGtaatctga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTAATTCGTGTACACACAGTAATTCCTCAATGAAATGGGCAAATTAATTTGTAGTCAATGCGGCAACACTTATATTCCAGCTGTTATTGTAATTGTAGTTGCTTGTATTGTATTATCAATAGAATACTGGCCAGACGCAGATCGTTAGTCACACGCGGCGGAACCAACTAAATGGGCTTTTTTGCTTGTCAACATTAGAGGTTTCCCACCCCCCCTCCCCCCAATCATGCCTATAACAAATGTTTGAAAAAGTGTTCACTCTAAAAATCCCGGGCGAAAATGTTATTCAATTTTCTAATTTGAATATATTTTTTTTTTTACTGACATATATCGTTGGAATATATAACAACAATTTCCGACTGAACCATGATTTATAAACGCAGTAGATCTATCGAGCATCAGTCAAGCTCTGTTTATTATACC
Unaligned ( gi|7 ): TTTTGCTTTGTCACATTTAGAAGTCCACCTCCCCCCCCCCACCACCCCCCCCCCCCCCACCATCATACGCCATATATGTTGAAAAAAGTGTTTGGTCTAAAAATCCTGGGCAAAAAATTCAATTTTATTTATCTGCATCATAATTAATCGTTGGAATATGACACACATTTTTATTGATAACTTCTGATCATTTATATCAGACTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTATACGTTTGTTTGACTATACGGTTGTATTCAACACTTTGCGACTCTC
Unaligned ( gi|10 ): GTTTAGTCTAAAAATCCCAAGCAAACAATTCAATTTACTTTATTTGCAGCATAATTATTTTTTTTTTACTTAATCGTTGGAATATGATAAAACATTTTTATTGATATTCTGATATAATAAAGACTTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTGTACAGTTCTGATCAACGCGTTGTGACCCTCGTCT
Unaligned ( gi|11 ): TTAAAATCCGGGCGAAAAAAAATAATTCAATTATTTATTTGAATATATCTTTTTTTTTGTACATATCGTGGTTGAATATATACCATCAACTCTTCCGACTGAAATCCGATATTTTATTTAACGCAGTCAGATCTACGCGGGGGCATCAGTCAAGCTCTGTTTATTAATTTATCAATCGAACATGGC
Alignments
lowQualScore : 1111 1111 1 11 111 1111111 111111111111 11111 22222222222 111 33333333333 555555555555555 111111 222 3333333333 1 111111 1 222222222222 11 111 222222 1 3333333 1111 3333 1 2222 1 22 11 1 1111 1 222222222222 222222 777777777777777777777777777777777 1 11 1 1 1 111 1 1 1 1 111 1 11 1 1 11 1 1 111 11111 2222 1 2222 11 1 1 222 11 11111 1 22222 1111111 11 1 333333333 1 33333 5555555555 11 11 11 1 1
lowQualScore : 66 5 5 5 0 88 55 3 3 0 4 66 4 5 4 1 7777 4 4 6666 4 4 4 2 4 4 1 4 00 4 444 4 4444444 4 4 9999 4 5 66 66 777 1 33 888888888888 11111 11111111111 4 66 66 3 555 77 2 22222222222 3 6 99 333333333333333 6 1 999999 6 111 0000000000 6 6 6 3 999999 6 99 8 0 555555555555 2 66 3 3 111 3 000000 2 0 2222222 3 2 2222 2222 0 2 1111 0 2 33 3 33 7 2 5 4444 0 44 555555555555 111111 222222222222222222222222222222222 3 3 0 33 0 55 0 0 666 0 0 0 0 777 0 33 0 0 0 33 0 0 3 777 88888 1111 5 2 3 0000 3 33 0 0 2 111 55 33 88888 0 77777 8888888 99 1 22 1 7 3 333333333 3 55555 6 4444444444 88 0 33 33 7 0 0
lowQualScore : .. . . . . .. .. . . . . .. . . . . .... . . .... . . . . . . . . .. . ... . ....... . . .... . . .. .. ... . .. ............ ..... ........... . .. .. . ... .. . ........... . . .. ............... . . ...... . ... .......... . . . . ...... . .. . . ............ . .. . . ... . ...... . . ....... . . .... .... . . .... . . .. . .. . . . .... . .. ............ ...... ................................. . . . .. . .. . . ... . . . . ... . .. . . . .. . . . ... ..... .... . . . .... . .. . . . ... .. .. ..... . ..... ....... .. . .. . . . ......... . ..... . .......... .. . .. .. . . .
lowQualScore : 99 0 0 0 1 22 11 1 2 1 4 11 4 0 4 0 1111 4 4 7777 4 4 4 8 4 4 9 4 66 4 666 4 4444444 4 4 4444 4 4 11 11 888 9 00 444444444444 11111 11111111111 0 99 11 6 666 66 5 33333333333 5 7 22 222222222222222 7 0 222222 7 222 0000000000 7 7 7 3 222222 7 22 0 6 222222222222 5 55 2 2 000 2 222222 5 0 5555555 2 5 8888 2222 0 0 2222 0 5 88 2 22 0 5 5 8888 0 00 000000000000 222222 000000000000000000000000000000000 2 2 0 88 0 88 0 0 222 0 0 0 0 555 0 88 0 8 8 22 0 0 2 555 55555 2222 5 5 2 0000 2 88 0 0 5 000 88 88 55555 0 00000 5555555 55 0 55 0 3 3 000000000 3 77777 7 0000000000 33 8 88 88 0 0 0
consensus : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGNAAA-GGAG-GT-CTCGCCTTGTTT-GAAAAATGAC-A-AATT-T-TTACATA-TG--TTAGTGA-ATT-C-GT-TT-------CCA-TGG-AA----AC-GACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTA-----AAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATATGT---ACAACAAACAAATTGGGTA----------ATATATT-GA--ATATA--------------TTTA-ATGGC------CATCATAC-AAG-TTAGT-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-CAAGACAAATTACCCAAA-A-TTTAATCC-GAA--TTTCCTCA-GTAC--TCNT-AAAAATGGTCATTTGA-GGACAGA--TTT-CGAGG----AA-AATGGTC--AAAAATA-TATACTCATTGTTAACAAGATTT--T-TTA-TTTTACTATCGAGTTT---AAAG-AAT--GGTA---TCTA----------TAG-----C-TG-A--ACTAAC-AA--AAAATA-TTGG-TATG-TTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTTNATT-TGAGA-TCAT-TCAAAATT---TCAC-A---TCTA----AAACTACTACTAC---TAACA--GAT-C-ATGCC-A-TTTCCCACACAAA--AAAAGGCAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTANATTTTC-ATTANAAGCAATTGATAT-CAAATTA----TATTT-TTCCAGAA----TAAACAAAAAACAAAC---------GT--AAGCACTCTAGCCC--AA--TTTCCTCTGTTTTCCCGAAAAACGGTAAT-CTGAG-ATAAATT
Reference ( family-2461 ) : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGNAAA-GGAG-GT-CTCGCCTTGTTT-GAAAAATGAC-A-AATT-T-TTACATA-TG--TTAGTGA-ATT-C-GT-TT-------CCA-TGG-AA----AC-GACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTA-----AAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATATGT---ACAACAAACAAATTGGGTA----------ATATATT-GA--ATATA--------------TTTA-ATGGC------CATCATAC-AAG-TTAGT-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-CAAGACAAATTACCCAAA-A-TTTAATCC-GAA--TTTCCTCA-GTAC--TCNT-AAAAATGGTCATTTGA-GGACAGA--TTT-CGAGG----AA-AATGGTC--AAAAATA-TATACTCATTGTTAACAAGATTT--T-TTA-TTTTACTATCGAGTTT---AAAG-AAT--GGTA---TCTA----------TAG-----C-TG-A--ACTAAC-AA--AAAATA-TTGG-TATG-TTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTTNATT-TGAGA-TCAT-TCAAAATT---TCAC-A---TCTA----AAACTACTACTAC---TAACA--GAT-C-ATGCC-A-TTTCCCACACAAA--AAAAGGCAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTANATTTTC-ATTANAAGCAATTGATAT-CAAATTA----TATTT-TTCCAGAA----TAAACAAAAAACAAAC---------GT--AAGCACTCTAGCCC--AA--TTTCCTCTGTTTTCCCGAAAAACGGTAAT-CTGAG-ATAAATT
gi|1 : AAGGGGA--TA-TTGA-ATCTGAG-TGAA--GTAA-CAAT-TTTCCCTAA-AGAATCTTATTTTT-TCAT-GGAAAA-G-AG-G--CT-GCCT-GTTT-GAAAAATGAT-ATAATT-T-TTACATA-TGGTTTAATGA-ATT---GT-TT-------CCA-TGG-AA-----C-AACCTCTGTAAG--ACTAGT---A---TTGAAAGTGC-------CA---ACGCTA-----AAA-----------T-TTAGCAGAATATGATGTC--CGAAGAT-TGT---ACA-CAAA-AAATTGA--A----------GTATAAT-GATGATATA--------------TTTA-ATG--------CATCATAC-AA---TAGTTA---TAAACT-GTGCAGACAATT-ATAGAAGGGGTT-ACA--AA-TATTTTAT--CAT-GTA---A-TC-CAAGACAAATTACCCAAA-A-TTTAATCC-G-----TTTCTCA-GTACGCTCT----AAATGGT-ATTTGAAGGACAGA--TTTTCAAGG----AAGAATGGTCGAAAAAACA-TA-ACT--TTGT-AACAAGATTA--T-TCAATTTTACTATCG---TT---AAAG-AAT--GGTAAAGTA-A----------TAG-----C-T-----AC-AAC-AATAAAAATA-TTGG-TATG-TTAGTGA-C-TTCGAT-AACAACAGAT-AT---AATCG-ATCAGAA-AGGTTCATTGTGCGA-TCATGTCAAAATT---TCAC-A---TCTA----AA-CTA-TACTA-----AATA--GAT-CTATGCC-AATTTCCCACACAAA--AAAAGACAAGCA--AGCTA-AA--G--TAA--GA---TATCAATACTTATATTTTC-ATTAAACGCAAT--GTAT-CA---TA----TATTTGTTCCAGAA------AACAAAAAACGATC---------GT--AAGCATGCTAGCCC--AA--TTATCTCTGTCCCCCTG--AAACGGTTAC-CTGAG-ATATATT
gi|12 : TTAAGGGGG--TA-T-GA-TGCTGAGATGAA-ATCAA-TTCGATTTTCAGAATA--ATC--GTTTAA-TCAT-GGCGA--GAAG-GT-ATC-TTTTGTTT-GAAAAATGAC-A-A-TT-T-TTATATA-GG--TTAGTGA-ATT-G-GT-TT-------CCA-TGG-AA----AC-GACCTCCG--AA--CTGACT---AATGTTGAAA---T-ACC---AATTCACGCCA-----AAA-----------T-catcacagcttgtacatgataatttgcaaatattatgattaacagttacatgttgaataaaataaattgattataaaatagaagttactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggctccgtggatatgggagggcaggtacagtccgcgctaactgtatgaagcaaatgatgaagagcctttttctttgaaatgttgttcaacacaaaatcaccctcaacaccaccccgaaaaaaatccaacaaatatcaaacaactataatcgttgggatcattcattgatccgccactctctaagaatatccagatatctttttttttttttatttacacatgaactaatattattatgttttggagtatttttctgaggcaattgggggttggggtatcatatgactgggagttagggtcatcgaaattctctgttacagtggcggtatagtaacaataatatcccgatacagcttcttttagcgttaagcactcgaagtacaaaatcaaactctaaagttatatacaacatgtgtgatgaacgctgagtctacatgataagaattttgacatcacgtggaaacccaggtatatattcaacggttagtgtaccgacagattcaaatttccgatttcccacattttttggatgatgtgtttaacgaatcttaacaacattgtcaattagcaataattgttttcaagtttttcggcgtgagatgatgaaattttctctgacattgctgctaaaaggggatc
gi|13 : A-A--ATCT-GTTAAT--CAT-GGTGA--GGAG-GT-CTC-TTTTCTTT-AAAAAATGAC-A-A-TT-T-TTACATA-GG--TTAGTGA-ATT-A-GT-TT-------CCT-TGG-AA----AC-GACCTCCG--AA--CTGTCC---AATGTTGAAAAAGC-AAA---TA---ACGCCA-----AAA-----------T-TTAG
gi|14 : tat-TTAGCAG--TTGAAGATC--CAAAGATATGT---ACACCAAACAAATTGAGT-----------ATAATTT-GA--ATATAT-------------TTTA-ATGGC------CATCATAC-ATG--TAGC-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTGAAAA-TATT
gi|15 : TTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CACGATTTTCCTAA-A--ATCT-ATTTT
gi|16 : cGATC--CGAAGATATGT---ACAACAAACAAATTGAGTA----------a
gi|2 : AAGGGA--TA-T-GA-TGCTGA--TAAA---TA--CA-GATTTTCCTAA-A-----C-ATTTTT-TCATTGGTA----GAG-GT-CTTGC--TGTTT-GAAAATTGAC-A-A--T-T-TTGC-TA-TG--T-GGTGA-ATTTC-GT-TT-------CCA-TGG-AA----A---ACC---G--AA--CCTAGC---A-TGTTGAAAATGC---C---CA----CGCTA-----AA------------T-TGAGCAA--TTGG-GATC--CAAA-AT-TGT---ACA-TAAA--AAT-GGGTA-----------TA-ATT-GA--ATAT----------------TTA--TGAC-------ATCATAT-AAG-T-AGT-----TC---T-GTGCAGACA-TTGAT-GA------T-GTG--AAATAT-ATTCTGCATT--A---ACTC---AAACAAATT-CCTAAA-A-TT-AATGC-CAA--TTTC-TCA-GTAC--TC-T-AAAAATGGTCATTTTA-GGATAG----TT-CAAGG----AA-AATG-TC--AAAA-TA--ACTCTCATTAT-AACAAGAATT--TATTA-TTTTACT--C-AGTT-----AAG-A-T--GGTA---TTTA----------TAATGCTAC-TGTA--ACTA-C-AA--AAAATA-T-GG-TATG-TTAGTGA-GATTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAATAGTTTAATT--GAGAATCAT-TCAAA-TT---TCACTA---TCTG----AA----CTACTAC---TA-CA--GAT-C-AT-CT-A-TTTGCCA-GCAAT--AAAAAACAA--ACAAGTTAGAA-TG--TAG--CA---TG--AAGCTTTATATTTT--ATTTTAAGCAATTGATATGCAAATAT----TATTT-TTCCAGAAAAAATAAACCAAAAA-AAATTTTTGGGGGGT--AAGCACTCTAGTCC--AA--TTTCCTCAGTTTTCTCGAAAAACGGTAATACTGGC-ATAAATTtaa
gi|3 : tTTAAGGGGAATTACT-GAATGCTGAGATGAA-AGTAAACAAG-TTTTCC-AA-G--ATCT-ATTTTT-TCAT-GGGAAACAGAG-GT-CTTGGCCTGTTTTGAAAAATGAC-A-AATT-TACTAT-TAGTG--TTAGTGA-ATT-C-GTCTT-------CCAATGG-AA----AC-AACCCCTG--AA--CCTAGC---AATGT-GAACATGC-ACC---CC---ACGCTA-----AAA-----------CGTTAGC-G--TTGGAGATC----AAGATACGTTACATAAAAAACAAATTGGGTATAATCTGAATATATATTTAA--ATATA--------------TTTACATGGC------CAGCATACCAAG-T-AGTCA---TA---T-GTGCAGACA-TT-ATTGA------TCGTG--AA-AAT-ATTT-----TGCATACACTCTCAGGACAA-TTACCCAAACACTTTAATCCCGAAATTTTCCTCAAGTACCATCAT-AAAAA----CATC----GGACAG----TT-TGAGGTACGAA-AATGGTCC-AAAAATG-TATACTCATGATTAAACATATTT--T-TTA-TT--ATTAT-GAGTCCCCAAAAGCAATTTGATA---TCTAATTAAATAGCTAG-----CATG-ACTACTAAC-AA--AAAATAATTGGGTATG-TTAGTGAAG-TTCGATCAA-AA-AGATTACTTAAATCGGAC--GAA-AACTT-ATT-TGAGA-TCAT-TCAAAATTATTCCAC-A---TCTA----AAACTACT-TTAC---TAACAAAGAT-C-ATGTCTA-TTTCCC-CACAAA--AAAGGGCAA--A--AGTTA-AATTGT-TAAACGACATTATCAATATTTAAATTTTCAATTAtcattaaattgggtcgaataatgctctgcatcttatgacttatagtaagtgataaaaataattgatataaatagaatgtactaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgggataatgggacgtaaattgcccgcttaattgtatgaatcgaatacaagagctttttcttgagtgttttcaacacccccctaaaaataaaatacgaagaacaaaataataatccatttggggtaatcttctagatgcactcctcaaaatctactacaaatatagtaatattttggagctgagtattttctgagaaatctgggggtgggggtgattactgatgaatgggagttagggaacatacagaattctcggttactaaaggggtacgtatatatccatgtatatgctccgttacacttcttctgttcttaaagcagtcttacactcgaatcttctaagtataaaatgatcaatttgatgaacgtgatcactatgatacgtaaaattttgaacatcagcgtggatacctcagtataaattatatttcagtttagtggtacaagatcaaatttaatttacaagtaattaacgcattcctatcattttatgatttggaatgtttttacacgaatcttaacacaatgtttaatttagtaaataaatttgcatttcatattcggtgagatcggatgatttctataaatgtggaaaaggaga
gi|3 : AACACCTTAGCCC--GACATTTCCTCTGTTTTCCCTGAAACGGGTAAT-CTGAG-AAAAATTacaccttagcccgacatttcctctgttttccctgaaacgggtaatctgagaaaaattgatcatgataaatctgcttgcaatattcatgattaaaacagtatggcagcttgaaaaaataaaattgatataacatcagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattgaaggaacgagagaggagagaggcctcgggataatgggacggtacattgctgcgtcgaaataatacaagagctttttcttgaaatgttttatcacacccgcccccccaatgaaaaaaacaaaaaactataaaatccagtggagggtcatcattctagatccgccactcaaaatccatatttttttttaattgacacatagaactacaagatataaatattggggtatttttctgagggcaatcttgggggtggggggg
gi|4 : ttaaggggaattactgaatgctgagatgaaagtaaacaagttttccaagatctattttttcatgggaaacagaggtcttggcctgttttgaaaaatgacaaatttactattagtgttagtgaattcgtcttccaatggaaacaacccctgaacctagcaatgtgaacatgcaccccacgctaaaacgttagcgttggagatcaagatacgttacataaaaaacaaattgggtataatctgaatatatatttaaatatatttacatggccagcataccaagtagtcatatgtgcagacattattgatcgtgaaaatattttgcatacactctcaggacaattacccaaacactttaatcccgaaattttcctcaagtaccatcataaaaacatcggacagtttgaggtacgaaaatggtccaaaaatgtatactcatgattaaacatattttttattattatgagtccccaaaagcaatttgatatctaattaaatagctagcatgactactaacaaaaaataattgggtatgttagtgaagttcgatcaaaaagattacttaaatcggacgaaaacttatttgagatcattcaaaattattccacatctaaaactactttactaacaaagatcatgtctatttccccacaaaaaagggcaaaagttaaattgttaaacgacattatcaatatttaaattttcaattTTTAAGGGGA--TA-T-GA-TGCTGAGATGAAGAGTAC-AAAGAATTCCGTAA-A--ATCT-ATTTTT-TCAT-GGAAAATGAAG-GAACTCGCCTTGTTT-GAAATATGA--A-CATT-T-CTACATA-TG--TTAGTGA-GTT-C-GG-TT-------CCA-TGGTAA----ACCAACCCCTG--AA--CCTAGT---AATGTGGAAAATGC--TC---CA---ACGCAA-----AAA-----------T-TAAGCAG--TTTGGAATC--CAAAGATATGT----CAACAAACACATTGAGTA----------ATATATT-GA--ATAT---------------TGTA-ATGGC------CATCATAC-AAGTTTAGT-A----A---T-GTGCAGGAA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-TAAGACAAATTACCCAAA-A-TGTAATCC-GAA--TTTCCTCA-GTAC--TCCTAAAAAATGGTCATTTGA-GGATAGAGTTTT-CAAGG----AA-AATGGTC--AAAAATATTATACTCATTGTTAACAAGATTTAAT-TTA-TTTCACTATTGAGTTT---AAAG--AT--GATA---TCTA----------TAGA----C-TG-A--ACTAACAAA--AAAATA-TT-G-TATGTTTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTAGATT-TGAGA-TCAT-TCAAAATT---TCAC-ATATTCTAAATTAAACTACTACTACATGTAACA--TATGC-ATGTC-ATTTTCCCACACAAAGGAAAAGGCAA--A--AGTTA-AA-TGGTTAA--GA---TACAAATACTTTGGTATTC-ATTAGAAGCAATTGATAT-CAAATTATTATTATTT-TCCCAGAT----TAAACAAAAAACAAAT---------GTAAAAGCACTCTAGCCCGGAA--TTTCCTCTGTTTTCCCGAAAAACATTAAT-CTGAGCATAAATTgatcatgataaatctgcttgcaatattcatgattaaaacagtatggcagcttgaaaaaataaaattgatataacatcagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattgaaggaacgagagaggagagaggcctcgggataatgggacggtacattgctgcgtcgaaataatacaagagctttttcttgaaatgttttatcacacccgcccccccaatgaaaaaaacaaaaaactataaaatccagtggagggtcatcattctagatccgccactcaaaatccatatttttttttaattgacacatagaactacaagatataaatattggggtatttttctgagggcaatcttgggggtggggggg
gi|6 : -GGAAAA-TGAGAGT-CTTGTGCTGTTT-GAAAAATGACAA-AATTGT-TTACATT-TGT-TTAGTGATATT-TGGT-TTTTGTTTGCCA-TTG-GACCACAC-GA---TTG--AAGCCTTAGTCGAGATGTTAAAATTGCTAGC---CC---ACGCTA-----AAAATTTGTTTTTTT-TCAGCAG--TTGGAGATCTTCAAAGATGTGTTA-ACAA-AAACAGATTTGGTATTG-------AT-TGTT-GC--GGGTAGGTGGGTGTTGAGGTTTG-A-GGCGGAGGGCATCATTA-AAG-TGAGT-ATGGTA---TGGTGCAGAAA-TT-AT-GA------T-GTG--
gi|8 : TAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGAAAA-G-AG-GT-CTCGC-TTGTTT-GAAAAATGAC-A-AATT-T-T-ACATA-TG--TTAGTGA-ATT-C-GT-TT-------CCA-TGG-AA----AC-AACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTAAATTTAAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATACAC---ACAACAAACAAATTGGGTA----------
gi|9 : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCATAA-A--A-AT-AGTTTAATCAT-GGCGAG-GG-G-GT-CTC-TTTTGATT-AAAAAATGAC-A-A-TT-T-TTACATA-GG--TTAGTGA-ATT-G-GT-TT-------CCA-TGG-AA----AC-GACCTCTG--AA--CTGACC---AATGTTGAAAA----ACCAAATA---ACGCCA-----AAA-----------T-TTAGCAG--TGGTAGAAT--TAAAAATATGtaatctga
blockSeqs : AT C . A GA AA C A T . . A T C ACAG A A TGGC T A . A G A A G T T TC C TTGTTTG A T CCAC C T . GC CGA A AA ACCAATTC AATTT ATTTGTTTTTT G . TT A TAC CC C TAATCTGAATA A T . AGGTGGGTGTTGAGG C G GGAGGG C TTT ATGGTA G . G T . C AA A T TGCATTA C TC A A CAC T CGAAAT C A CATCAT T C TTA AGTT . A TACG . G C A TT C C T AAT . TT ATGAGTCCCCA CAATTT TCTAATTAAATAGCTAGCATGACT T A A . A TG G T GA C . . T TTA G . T A T A . A ATT ATAT AATT A C A CATG A AA G . G TA AC GG ACA G TTGT ACGACAT TC T CA T T G AATTATTAT . AAAAT C TTTTTGGGGG AA GG CA A A C
blockSeqs : . . . . A A C A . . . . . T ATGA . . CGCC . . . A . . A . . . TG . . . . . . T . . . A AT ACCAAATA . . . . . A TA AC C TTGA T . . AT . A . . TG CATA . . . . . . . . T TGCATAC C T A A A T CAA C . TCCTA T C TGA . . G . . G . A T T C T TA . TC ATTGAGTTT AT TTTATAATGCTACTGTA T A . . . G . . AG . . . . . . . . G T . . A . TA . A C A C A . . . G AT A . A . TGGT CA CA A C G T . AATAT . T . T . . . G . .
blockSeqs : . . . . A A A A . . . . . T ATG . . TGTG . . . A . . A . . . G . . . . . . C . . . A AT TAGCCC . . . . . A . AA C A T . . A . G . . T ATA . . . . . . . . . CATTGTA C . . . A . GAA . . TCT . C . . . A . . . . . . T C . T . . CAGTT AT TCTATAGACTGA T . . . . T . . G . . . . . . . . . . . . . . A . . C . C . . . . . A C . A . TG GA . G . . . A . .
blockSeqs : . . . . A C A A . . . . . G GGG . . CTT . . . A . . A . . . A . . . . . . C . . . A AT AAATA . . . . . A . AC C A T . . . . G . . T TC . . . . . . . . .
blockSeqs : . . . . A A A A . . . . . A GA . . CTT . . . . . . A . . . C . . . . . . C . . . A TT ACCCC . . . . . G . AC C . . . . . . G . . T AA . . . . . . .
blockSeqs : . . . . A A A A . . . . . A GG . . TGC . . . . . . A . . . C . . . . . . T . . . A AT ACCCA . . . . . A . T C
blockSeqs : . . . . . . . . . . . . . A AG . . CGC . . . . . . . . . . C . . . . . . . . . . A A TCCA . . . . . A . A .
blockSeqs : . . . . C G . . CTT . . . . . . . . . . G . . . . . . . . . . . . CCA . . . . .
blockSeqs : .
blockSeqCons : A* ** ** N** ** ACCCA******* ** AC ** A************** ATA******* ******
originalCons : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGNAAA-GGAG-GT-CTCGCCTTGTTT-GAAAAATGAC-A-AATT-T-TTACATA-TG--TTAGTGA-ATT-C-GT-TT-------CCA-TGG-AA----AC-GACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTA-----AAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATATGT---ACAACAAACAAATTGGGTA----------ATATATT-GA--ATATA--------------TTTA-ATGGC------CATCATAC-AAG-TTAGT-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-CAAGACAAATTACCCAAA-A-TTTAATCC-GAA--TTTCCTCA-GTAC--TCNT-AAAAATGGTCATTTGA-GGACAGA--TTT-CGAGG----AA-AATGGTC--AAAAATA-TATACTCATTGTTAACAAGATTT--T-TTA-TTTTACTATCGAGTTT---AAAG-AAT--GGTA---TCTA----------TAG-----C-TG-A--ACTAAC-AA--AAAATA-TTGG-TATG-TTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTTNATT-TGAGA-TCAT-TCAAAATT---TCAC-A---TCTA----AAACTACTACTAC---TAACA--GAT-C-ATGCC-A-TTTCCCACACAAA--AAAAGGCAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTANATTTTC-ATTANAAGCAATTGATAT-CAAATTA----TATTT-TTCCAGAA----TAAACAAAAAACAAAC---------GT--AAGCACTCTAGCCC--AA--TTTCCTCTGTTTTCCCGAAAAACGGTAAT-CTGAG-ATAAATT
finalCons : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAAA-GTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGNAAA-GGAG-GT-CTCGCCTTGTTT-GAAAAATGAC-A-AATT-T-TTACATA-TG--TTAGTGA-ATTN--GT-TT-------CCA-TGG-AA----AC-GACCCCTG--AA--CCTAGC---AATGTTGAAAATGCACCCA-------ACGCTA-----AAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATATGT---ACAACAAACAAATTGGGTA----------ATATATT-GA--ATATA--------------TTTA-ATGGC------CATCATAC-AAG-TTAGTATA-------T-GTGCAGACA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-CAAGACAAATTACCCAAA-A-TTTAATCC-GAA--TTTCCTCA-GTAC--TCNT-AAAAATGGTCATTTGA-GGACAGA--TTT-CGAGG----AA-AATGGTC--AAAAATA-TATACTCATTGTTAACAAGATTT--T-TTA-TTTTACTATCGAGTTT---AAAG-AAT--GGTA---TCTA----------TAG-----C-TG-A--ACTAAC-AA--AAAATA-TTGG-TATG-TTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTTNATT-TGAGA-TCAT-TCAAAATT---TCAC-A---TCTA----AAACTACTACTAC---TAACA--GAT-C-ATGCC-A-TTTCCCACACAAA--AAAAGGCAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTANATTTTC-ATTANAAGCAATTGATAT-CAAATTA----TATTT-TTCCAGAA----TAAACAAAAAACAAAC---------GT--AAGCACTCTAGCCC--AA--TTTCCTCTGTTTTCCCGAAAAACGGTAAT-CTGAG-ATAAATT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTAATTCGTGTACACACAGTAATTCCTCAATGAAATGGGCAAATTAATTTGTAGTCAATGCGGCAACACTTATATTCCAGCTGTTATTGTAATTGTAGTTGCTTGTATTGTATTATCAATAGAATACTGGCCAGACGCAGATCGTTAGTCACACGCGGCGGAACCAACTAAATGGGCTTTTTTGCTTGTCAACATTAGAGGTTTCCCACCCCCCCTCCCCCCAATCATGCCTATAACAAATGTTTGAAAAAGTGTTCACTCTAAAAATCCCGGGCGAAAATGTTATTCAATTTTCTAATTTGAATATATTTTTTTTTTTACTGACATATATCGTTGGAATATATAACAACAATTTCCGACTGAACCATGATTTATAAACGCAGTAGATCTATCGAGCATCAGTCAAGCTCTGTTTATTATACC
Unaligned ( gi|7 ): TTTTGCTTTGTCACATTTAGAAGTCCACCTCCCCCCCCCCACCACCCCCCCCCCCCCCACCATCATACGCCATATATGTTGAAAAAAGTGTTTGGTCTAAAAATCCTGGGCAAAAAATTCAATTTTATTTATCTGCATCATAATTAATCGTTGGAATATGACACACATTTTTATTGATAACTTCTGATCATTTATATCAGACTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTATACGTTTGTTTGACTATACGGTTGTATTCAACACTTTGCGACTCTC
Unaligned ( gi|10 ): GTTTAGTCTAAAAATCCCAAGCAAACAATTCAATTTACTTTATTTGCAGCATAATTATTTTTTTTTTACTTAATCGTTGGAATATGATAAAACATTTTTATTGATATTCTGATATAATAAAGACTTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTGTACAGTTCTGATCAACGCGTTGTGACCCTCGTCT
Unaligned ( gi|11 ): TTAAAATCCGGGCGAAAAAAAATAATTCAATTATTTATTTGAATATATCTTTTTTTTTGTACATATCGTGGTTGAATATATACCATCAACTCTTCCGACTGAAATCCGATATTTTATTTAACGCAGTCAGATCTACGCGGGGGCATCAGTCAAGCTCTGTTTATTAATTTATCAATCGAACATGGC
Alignments
lowQualScore : 1111 1111 1 11 1111111 111111111111 11111 22222222222 111 33333333333 555555555555555 111111 222 3333333333 1 111111 1 222222222222 11 111 222222 1 3333333 1111 3333 1 2222 1 22 11 1 1111 1 222222222222 222222 777777777777777777777777777777777 1 11 1 1 1 111 1 1 1 1 111 1 11 1 1 11 1 1 111 11111 2222 1 2222 11 1 1 222 11 11111 1 22222 1111111 11 1 333333333 1 33333 5555555555 11 11 11 1 1
lowQualScore : 66 5 5 5 0 88 55 3 3 0 4 66 4 5 4 1 7777 4 4 6666 4 4 4 2 4 4 1 4 00 4 4 99 4 4444444 4 4 9999 4 5 66 66 777 1 33 888888888888 11111 11111111111 4 66 66 3 555 77 2 22222222222 3 6 99 333333333333333 6 1 999999 6 111 0000000000 6 6 6 3 999999 6 99 8 0 555555555555 2 66 3 3 111 3 000000 2 0 2222222 3 2 2222 2222 0 2 1111 0 2 33 3 33 7 2 5 4444 0 44 555555555555 111111 222222222222222222222222222222222 3 3 0 33 0 55 0 0 666 0 0 0 0 777 0 33 0 0 0 33 0 0 3 777 88888 1111 5 2 3 0000 3 33 0 0 2 111 55 33 88888 0 77777 8888888 99 1 22 1 7 3 333333333 3 55555 6 4444444444 88 0 33 33 7 0 0
lowQualScore : .. . . . . .. .. . . . . .. . . . . .... . . .... . . . . . . . . .. . . .. . ....... . . .... . . .. .. ... . .. ............ ..... ........... . .. .. . ... .. . ........... . . .. ............... . . ...... . ... .......... . . . . ...... . .. . . ............ . .. . . ... . ...... . . ....... . . .... .... . . .... . . .. . .. . . . .... . .. ............ ...... ................................. . . . .. . .. . . ... . . . . ... . .. . . . .. . . . ... ..... .... . . . .... . .. . . . ... .. .. ..... . ..... ....... .. . .. . . . ......... . ..... . .......... .. . .. .. . . .
lowQualScore : 99 0 0 0 1 22 11 1 2 1 4 11 4 0 4 0 1111 4 4 7777 4 4 4 8 4 4 9 4 66 4 4 88 4 4444444 4 4 4444 4 4 11 11 888 9 00 444444444444 11111 11111111111 0 99 11 6 666 66 5 33333333333 5 7 22 222222222222222 7 0 222222 7 222 0000000000 7 7 7 3 222222 7 22 0 6 222222222222 5 55 2 2 000 2 222222 5 0 5555555 2 5 8888 2222 0 0 2222 0 5 88 2 22 0 5 5 8888 0 00 000000000000 222222 000000000000000000000000000000000 2 2 0 88 0 88 0 0 222 0 0 0 0 555 0 88 0 8 8 22 0 0 2 555 55555 2222 5 5 2 0000 2 88 0 0 5 000 88 88 55555 0 00000 5555555 55 0 55 0 3 3 000000000 3 77777 7 0000000000 33 8 88 88 0 0 0
consensus : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGNAAA-GGAG-GT-CTCGCCTTGTTT-GAAAAATGAC-A-AATT-T-TTACATA-TG--TTAGTGA-A-TTN-GT-TT-------CCA-TGG-AA----AC-GACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTA-----AAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATATGT---ACAACAAACAAATTGGGTA----------ATATATT-GA--ATATA--------------TTTA-ATGGC------CATCATAC-AAG-TTAGT-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-CAAGACAAATTACCCAAA-A-TTTAATCC-GAA--TTTCCTCA-GTAC--TCNT-AAAAATGGTCATTTGA-GGACAGA--TTT-CGAGG----AA-AATGGTC--AAAAATA-TATACTCATTGTTAACAAGATTT--T-TTA-TTTTACTATCGAGTTT---AAAG-AAT--GGTA---TCTA----------TAG-----C-TG-A--ACTAAC-AA--AAAATA-TTGG-TATG-TTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTTNATT-TGAGA-TCAT-TCAAAATT---TCAC-A---TCTA----AAACTACTACTAC---TAACA--GAT-C-ATGCC-A-TTTCCCACACAAA--AAAAGGCAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTANATTTTC-ATTANAAGCAATTGATAT-CAAATTA----TATTT-TTCCAGAA----TAAACAAAAAACAAAC---------GT--AAGCACTCTAGCCC--AA--TTTCCTCTGTTTTCCCGAAAAACGGTAAT-CTGAG-ATAAATT
Reference ( family-2461 ) : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGNAAA-GGAG-GT-CTCGCCTTGTTT-GAAAAATGAC-A-AATT-T-TTACATA-TG--TTAGTGA-A-TTN-GT-TT-------CCA-TGG-AA----AC-GACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTA-----AAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATATGT---ACAACAAACAAATTGGGTA----------ATATATT-GA--ATATA--------------TTTA-ATGGC------CATCATAC-AAG-TTAGT-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-CAAGACAAATTACCCAAA-A-TTTAATCC-GAA--TTTCCTCA-GTAC--TCNT-AAAAATGGTCATTTGA-GGACAGA--TTT-CGAGG----AA-AATGGTC--AAAAATA-TATACTCATTGTTAACAAGATTT--T-TTA-TTTTACTATCGAGTTT---AAAG-AAT--GGTA---TCTA----------TAG-----C-TG-A--ACTAAC-AA--AAAATA-TTGG-TATG-TTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTTNATT-TGAGA-TCAT-TCAAAATT---TCAC-A---TCTA----AAACTACTACTAC---TAACA--GAT-C-ATGCC-A-TTTCCCACACAAA--AAAAGGCAA--A--AGTTA-AA-TG--TAA--GA---TATCAATACTTANATTTTC-ATTANAAGCAATTGATAT-CAAATTA----TATTT-TTCCAGAA----TAAACAAAAAACAAAC---------GT--AAGCACTCTAGCCC--AA--TTTCCTCTGTTTTCCCGAAAAACGGTAAT-CTGAG-ATAAATT
gi|1 : AAGGGGA--TA-TTGA-ATCTGAG-TGAA--GTAA-CAAT-TTTCCCTAA-AGAATCTTATTTTT-TCAT-GGAAAA-G-AG-G--CT-GCCT-GTTT-GAAAAATGAT-ATAATT-T-TTACATA-TGGTTTAATGA-A-TT--GT-TT-------CCA-TGG-AA-----C-AACCTCTGTAAG--ACTAGT---A---TTGAAAGTGC-------CA---ACGCTA-----AAA-----------T-TTAGCAGAATATGATGTC--CGAAGAT-TGT---ACA-CAAA-AAATTGA--A----------GTATAAT-GATGATATA--------------TTTA-ATG--------CATCATAC-AA---TAGTTA---TAAACT-GTGCAGACAATT-ATAGAAGGGGTT-ACA--AA-TATTTTAT--CAT-GTA---A-TC-CAAGACAAATTACCCAAA-A-TTTAATCC-G-----TTTCTCA-GTACGCTCT----AAATGGT-ATTTGAAGGACAGA--TTTTCAAGG----AAGAATGGTCGAAAAAACA-TA-ACT--TTGT-AACAAGATTA--T-TCAATTTTACTATCG---TT---AAAG-AAT--GGTAAAGTA-A----------TAG-----C-T-----AC-AAC-AATAAAAATA-TTGG-TATG-TTAGTGA-C-TTCGAT-AACAACAGAT-AT---AATCG-ATCAGAA-AGGTTCATTGTGCGA-TCATGTCAAAATT---TCAC-A---TCTA----AA-CTA-TACTA-----AATA--GAT-CTATGCC-AATTTCCCACACAAA--AAAAGACAAGCA--AGCTA-AA--G--TAA--GA---TATCAATACTTATATTTTC-ATTAAACGCAAT--GTAT-CA---TA----TATTTGTTCCAGAA------AACAAAAAACGATC---------GT--AAGCATGCTAGCCC--AA--TTATCTCTGTCCCCCTG--AAACGGTTAC-CTGAG-ATATATT
gi|12 : TTAAGGGGG--TA-T-GA-TGCTGAGATGAA-ATCAA-TTCGATTTTCAGAATA--ATC--GTTTAA-TCAT-GGCGA--GAAG-GT-ATC-TTTTGTTT-GAAAAATGAC-A-A-TT-T-TTATATA-GG--TTAGTGA-A-TTG-GT-TT-------CCA-TGG-AA----AC-GACCTCCG--AA--CTGACT---AATGTTGAAA---T-ACC---AATTCACGCCA-----AAA-----------T-catcacagcttgtacatgataatttgcaaatattatgattaacagttacatgttgaataaaataaattgattataaaatagaagttactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgggctccgtggatatgggagggcaggtacagtccgcgctaactgtatgaagcaaatgatgaagagcctttttctttgaaatgttgttcaacacaaaatcaccctcaacaccaccccgaaaaaaatccaacaaatatcaaacaactataatcgttgggatcattcattgatccgccactctctaagaatatccagatatctttttttttttttatttacacatgaactaatattattatgttttggagtatttttctgaggcaattgggggttggggtatcatatgactgggagttagggtcatcgaaattctctgttacagtggcggtatagtaacaataatatcccgatacagcttcttttagcgttaagcactcgaagtacaaaatcaaactctaaagttatatacaacatgtgtgatgaacgctgagtctacatgataagaattttgacatcacgtggaaacccaggtatatattcaacggttagtgtaccgacagattcaaatttccgatttcccacattttttggatgatgtgtttaacgaatcttaacaacattgtcaattagcaataattgttttcaagtttttcggcgtgagatgatgaaattttctctgacattgctgctaaaaggggatc
gi|13 : A-A--ATCT-GTTAAT--CAT-GGTGA--GGAG-GT-CTC-TTTTCTTT-AAAAAATGAC-A-A-TT-T-TTACATA-GG--TTAGTGA-A-TTA-GT-TT-------CCT-TGG-AA----AC-GACCTCCG--AA--CTGTCC---AATGTTGAAAAAGC-AAA---TA---ACGCCA-----AAA-----------T-TTAG
gi|14 : tat-TTAGCAG--TTGAAGATC--CAAAGATATGT---ACACCAAACAAATTGAGT-----------ATAATTT-GA--ATATAT-------------TTTA-ATGGC------CATCATAC-ATG--TAGC-A---TA---T-GTGCAGACA-TT-AT-GA------T-GTGAAAA-TATT
gi|15 : TTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CACGATTTTCCTAA-A--ATCT-ATTTT
gi|16 : cGATC--CGAAGATATGT---ACAACAAACAAATTGAGTA----------a
gi|2 : AAGGGA--TA-T-GA-TGCTGA--TAAA---TA--CA-GATTTTCCTAA-A-----C-ATTTTT-TCATTGGTA----GAG-GT-CTTGC--TGTTT-GAAAATTGAC-A-A--T-T-TTGC-TA-TG--T-GGTGA-A-TTTCGT-TT-------CCA-TGG-AA----A---ACC---G--AA--CCTAGC---A-TGTTGAAAATGC---C---CA----CGCTA-----AA------------T-TGAGCAA--TTGG-GATC--CAAA-AT-TGT---ACA-TAAA--AAT-GGGTA-----------TA-ATT-GA--ATAT----------------TTA--TGAC-------ATCATAT-AAG-T-AGT-----TC---T-GTGCAGACA-TTGAT-GA------T-GTG--AAATAT-ATTCTGCATT--A---ACTC---AAACAAATT-CCTAAA-A-TT-AATGC-CAA--TTTC-TCA-GTAC--TC-T-AAAAATGGTCATTTTA-GGATAG----TT-CAAGG----AA-AATG-TC--AAAA-TA--ACTCTCATTAT-AACAAGAATT--TATTA-TTTTACT--C-AGTT-----AAG-A-T--GGTA---TTTA----------TAATGCTAC-TGTA--ACTA-C-AA--AAAATA-T-GG-TATG-TTAGTGA-GATTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAATAGTTTAATT--GAGAATCAT-TCAAA-TT---TCACTA---TCTG----AA----CTACTAC---TA-CA--GAT-C-AT-CT-A-TTTGCCA-GCAAT--AAAAAACAA--ACAAGTTAGAA-TG--TAG--CA---TG--AAGCTTTATATTTT--ATTTTAAGCAATTGATATGCAAATAT----TATTT-TTCCAGAAAAAATAAACCAAAAA-AAATTTTTGGGGGGT--AAGCACTCTAGTCC--AA--TTTCCTCAGTTTTCTCGAAAAACGGTAATACTGGC-ATAAATTtaa
gi|3 : tTTAAGGGGAATTACT-GAATGCTGAGATGAA-AGTAAACAAG-TTTTCC-AA-G--ATCT-ATTTTT-TCAT-GGGAAACAGAG-GT-CTTGGCCTGTTTTGAAAAATGAC-A-AATT-TACTAT-TAGTG--TTAGTGA-A-TTC-GTCTT-------CCAATGG-AA----AC-AACCCCTG--AA--CCTAGC---AATGT-GAACATGC-ACC---CC---ACGCTA-----AAA-----------CGTTAGC-G--TTGGAGATC----AAGATACGTTACATAAAAAACAAATTGGGTATAATCTGAATATATATTTAA--ATATA--------------TTTACATGGC------CAGCATACCAAG-T-AGTCA---TA---T-GTGCAGACA-TT-ATTGA------TCGTG--AA-AAT-ATTT-----TGCATACACTCTCAGGACAA-TTACCCAAACACTTTAATCCCGAAATTTTCCTCAAGTACCATCAT-AAAAA----CATC----GGACAG----TT-TGAGGTACGAA-AATGGTCC-AAAAATG-TATACTCATGATTAAACATATTT--T-TTA-TT--ATTAT-GAGTCCCCAAAAGCAATTTGATA---TCTAATTAAATAGCTAG-----CATG-ACTACTAAC-AA--AAAATAATTGGGTATG-TTAGTGAAG-TTCGATCAA-AA-AGATTACTTAAATCGGAC--GAA-AACTT-ATT-TGAGA-TCAT-TCAAAATTATTCCAC-A---TCTA----AAACTACT-TTAC---TAACAAAGAT-C-ATGTCTA-TTTCCC-CACAAA--AAAGGGCAA--A--AGTTA-AATTGT-TAAACGACATTATCAATATTTAAATTTTCAATTAtcattaaattgggtcgaataatgctctgcatcttatgacttatagtaagtgataaaaataattgatataaatagaatgtactaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgggataatgggacgtaaattgcccgcttaattgtatgaatcgaatacaagagctttttcttgagtgttttcaacacccccctaaaaataaaatacgaagaacaaaataataatccatttggggtaatcttctagatgcactcctcaaaatctactacaaatatagtaatattttggagctgagtattttctgagaaatctgggggtgggggtgattactgatgaatgggagttagggaacatacagaattctcggttactaaaggggtacgtatatatccatgtatatgctccgttacacttcttctgttcttaaagcagtcttacactcgaatcttctaagtataaaatgatcaatttgatgaacgtgatcactatgatacgtaaaattttgaacatcagcgtggatacctcagtataaattatatttcagtttagtggtacaagatcaaatttaatttacaagtaattaacgcattcctatcattttatgatttggaatgtttttacacgaatcttaacacaatgtttaatttagtaaataaatttgcatttcatattcggtgagatcggatgatttctataaatgtggaaaaggaga
gi|3 : AACACCTTAGCCC--GACATTTCCTCTGTTTTCCCTGAAACGGGTAAT-CTGAG-AAAAATTacaccttagcccgacatttcctctgttttccctgaaacgggtaatctgagaaaaattgatcatgataaatctgcttgcaatattcatgattaaaacagtatggcagcttgaaaaaataaaattgatataacatcagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattgaaggaacgagagaggagagaggcctcgggataatgggacggtacattgctgcgtcgaaataatacaagagctttttcttgaaatgttttatcacacccgcccccccaatgaaaaaaacaaaaaactataaaatccagtggagggtcatcattctagatccgccactcaaaatccatatttttttttaattgacacatagaactacaagatataaatattggggtatttttctgagggcaatcttgggggtggggggg
gi|4 : ttaaggggaattactgaatgctgagatgaaagtaaacaagttttccaagatctattttttcatgggaaacagaggtcttggcctgttttgaaaaatgacaaatttactattagtgttagtgaattcgtcttccaatggaaacaacccctgaacctagcaatgtgaacatgcaccccacgctaaaacgttagcgttggagatcaagatacgttacataaaaaacaaattgggtataatctgaatatatatttaaatatatttacatggccagcataccaagtagtcatatgtgcagacattattgatcgtgaaaatattttgcatacactctcaggacaattacccaaacactttaatcccgaaattttcctcaagtaccatcataaaaacatcggacagtttgaggtacgaaaatggtccaaaaatgtatactcatgattaaacatattttttattattatgagtccccaaaagcaatttgatatctaattaaatagctagcatgactactaacaaaaaataattgggtatgttagtgaagttcgatcaaaaagattacttaaatcggacgaaaacttatttgagatcattcaaaattattccacatctaaaactactttactaacaaagatcatgtctatttccccacaaaaaagggcaaaagttaaattgttaaacgacattatcaatatttaaattttcaattTTTAAGGGGA--TA-T-GA-TGCTGAGATGAAGAGTAC-AAAGAATTCCGTAA-A--ATCT-ATTTTT-TCAT-GGAAAATGAAG-GAACTCGCCTTGTTT-GAAATATGA--A-CATT-T-CTACATA-TG--TTAGTGA-G-TTC-GG-TT-------CCA-TGGTAA----ACCAACCCCTG--AA--CCTAGT---AATGTGGAAAATGC--TC---CA---ACGCAA-----AAA-----------T-TAAGCAG--TTTGGAATC--CAAAGATATGT----CAACAAACACATTGAGTA----------ATATATT-GA--ATAT---------------TGTA-ATGGC------CATCATAC-AAGTTTAGT-A----A---T-GTGCAGGAA-TT-AT-GA------T-GTG--AA-TATTATTT--CATTGTA---ACTC-TAAGACAAATTACCCAAA-A-TGTAATCC-GAA--TTTCCTCA-GTAC--TCCTAAAAAATGGTCATTTGA-GGATAGAGTTTT-CAAGG----AA-AATGGTC--AAAAATATTATACTCATTGTTAACAAGATTTAAT-TTA-TTTCACTATTGAGTTT---AAAG--AT--GATA---TCTA----------TAGA----C-TG-A--ACTAACAAA--AAAATA-TT-G-TATGTTTAGTGA-G-TTCGAT-AA-AA-AGAT-AT---AATCG-AC--GAA-AGTTAGATT-TGAGA-TCAT-TCAAAATT---TCAC-ATATTCTAAATTAAACTACTACTACATGTAACA--TATGC-ATGTC-ATTTTCCCACACAAAGGAAAAGGCAA--A--AGTTA-AA-TGGTTAA--GA---TACAAATACTTTGGTATTC-ATTAGAAGCAATTGATAT-CAAATTATTATTATTT-TCCCAGAT----TAAACAAAAAACAAAT---------GTAAAAGCACTCTAGCCCGGAA--TTTCCTCTGTTTTCCCGAAAAACATTAAT-CTGAGCATAAATTgatcatgataaatctgcttgcaatattcatgattaaaacagtatggcagcttgaaaaaataaaattgatataacatcagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattgaaggaacgagagaggagagaggcctcgggataatgggacggtacattgctgcgtcgaaataatacaagagctttttcttgaaatgttttatcacacccgcccccccaatgaaaaaaacaaaaaactataaaatccagtggagggtcatcattctagatccgccactcaaaatccatatttttttttaattgacacatagaactacaagatataaatattggggtatttttctgagggcaatcttgggggtggggggg
gi|6 : -GGAAAA-TGAGAGT-CTTGTGCTGTTT-GAAAAATGACAA-AATTGT-TTACATT-TGT-TTAGTGATATTTG-GT-TTTTGTTTGCCA-TTG-GACCACAC-GA---TTG--AAGCCTTAGTCGAGATGTTAAAATTGCTAGC---CC---ACGCTA-----AAAATTTGTTTTTTT-TCAGCAG--TTGGAGATCTTCAAAGATGTGTTA-ACAA-AAACAGATTTGGTATTG-------AT-TGTT-GC--GGGTAGGTGGGTGTTGAGGTTTG-A-GGCGGAGGGCATCATTA-AAG-TGAGT-ATGGTA---TGGTGCAGAAA-TT-AT-GA------T-GTG--
gi|8 : TAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCCTAA-A--ATCT-ATTTTT-TCAT-GGAAAA-G-AG-GT-CTCGC-TTGTTT-GAAAAATGAC-A-AATT-T-T-ACATA-TG--TTAGTGA-A-TTC-GT-TT-------CCA-TGG-AA----AC-AACCCCTG--AA--CCTAGC---AATGTTGAAAATGC-ACC---CA---ACGCTAAATTTAAA-----------T-TTAGCAG--TTGGAGATC--CAAAGATACAC---ACAACAAACAAATTGGGTA----------
gi|9 : TTTAAGGGGA--TA-T-GA-TGCTGAGATGAA-AGTAA-CAAGATTTTCATAA-A--A-AT-AGTTTAATCAT-GGCGAG-GG-G-GT-CTC-TTTTGATT-AAAAAATGAC-A-A-TT-T-TTACATA-GG--TTAGTGA-A-TTG-GT-TT-------CCA-TGG-AA----AC-GACCTCTG--AA--CTGACC---AATGTTGAAAA----ACCAAATA---ACGCCA-----AAA-----------T-TTAGCAG--TGGTAGAAT--TAAAAATATGtaatctga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTAATTCGTGTACACACAGTAATTCCTCAATGAAATGGGCAAATTAATTTGTAGTCAATGCGGCAACACTTATATTCCAGCTGTTATTGTAATTGTAGTTGCTTGTATTGTATTATCAATAGAATACTGGCCAGACGCAGATCGTTAGTCACACGCGGCGGAACCAACTAAATGGGCTTTTTTGCTTGTCAACATTAGAGGTTTCCCACCCCCCCTCCCCCCAATCATGCCTATAACAAATGTTTGAAAAAGTGTTCACTCTAAAAATCCCGGGCGAAAATGTTATTCAATTTTCTAATTTGAATATATTTTTTTTTTTACTGACATATATCGTTGGAATATATAACAACAATTTCCGACTGAACCATGATTTATAAACGCAGTAGATCTATCGAGCATCAGTCAAGCTCTGTTTATTATACC
Unaligned ( gi|7 ): TTTTGCTTTGTCACATTTAGAAGTCCACCTCCCCCCCCCCACCACCCCCCCCCCCCCCACCATCATACGCCATATATGTTGAAAAAAGTGTTTGGTCTAAAAATCCTGGGCAAAAAATTCAATTTTATTTATCTGCATCATAATTAATCGTTGGAATATGACACACATTTTTATTGATAACTTCTGATCATTTATATCAGACTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTATACGTTTGTTTGACTATACGGTTGTATTCAACACTTTGCGACTCTC
Unaligned ( gi|10 ): GTTTAGTCTAAAAATCCCAAGCAAACAATTCAATTTACTTTATTTGCAGCATAATTATTTTTTTTTTACTTAATCGTTGGAATATGATAAAACATTTTTATTGATATTCTGATATAATAAAGACTTTAGCTCTCGGTTATTAGTCGTTCAATTTGACTGTACAGTTCTGATCAACGCGTTGTGACCCTCGTCT
Unaligned ( gi|11 ): TTAAAATCCGGGCGAAAAAAAATAATTCAATTATTTATTTGAATATATCTTTTTTTTTGTACATATCGTGGTTGAATATATACCATCAACTCTTCCGACTGAAATCCGATATTTTATTTAACGCAGTCAGATCTACGCGGGGGCATCAGTCAAGCTCTGTTTATTAATTTATCAATCGAACATGGC